Psyllid ID: psy1056
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 590 | 2.2.26 [Sep-21-2011] | |||||||
| F6S675 | 512 | Inosine-5'-monophosphate | yes | N/A | 0.786 | 0.906 | 0.559 | 1e-147 | |
| Q07152 | 537 | Inosine-5'-monophosphate | yes | N/A | 0.747 | 0.821 | 0.522 | 1e-146 | |
| A0JNA3 | 514 | Inosine-5'-monophosphate | yes | N/A | 0.796 | 0.914 | 0.546 | 1e-146 | |
| Q5RGV1 | 514 | Inosine-5'-monophosphate | yes | N/A | 0.796 | 0.914 | 0.546 | 1e-145 | |
| B0UXP9 | 514 | Inosine-5'-monophosphate | no | N/A | 0.801 | 0.920 | 0.538 | 1e-145 | |
| P50096 | 514 | Inosine-5'-monophosphate | yes | N/A | 0.796 | 0.914 | 0.542 | 1e-144 | |
| D3ZLZ7 | 514 | Inosine-5'-monophosphate | yes | N/A | 0.796 | 0.914 | 0.542 | 1e-144 | |
| P12268 | 514 | Inosine-5'-monophosphate | no | N/A | 0.796 | 0.914 | 0.540 | 1e-144 | |
| E9PU28 | 514 | Inosine-5'-monophosphate | yes | N/A | 0.796 | 0.914 | 0.538 | 1e-144 | |
| F7CYY5 | 515 | Inosine-5'-monophosphate | no | N/A | 0.798 | 0.914 | 0.542 | 1e-144 |
| >sp|F6S675|IMDH1_XENTR Inosine-5'-monophosphate dehydrogenase 1 OS=Xenopus tropicalis GN=impdh1 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 521 bits (1343), Expect = e-147, Method: Compositional matrix adjust.
Identities = 297/531 (55%), Positives = 369/531 (69%), Gaps = 67/531 (12%)
Query: 75 DFLENSANMDLKI-EKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGA--- 130
DFL +D E DL+S LT+KITL PL+SSPMDTVTESDMAIAMAL GGIG
Sbjct: 34 DFLILPGFIDFTADEVDLTSALTRKITLKTPLISSPMDTVTESDMAIAMALMGGIGIIHH 93
Query: 131 -AIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTT 189
+A++ R K D V++ S +++ G+V
Sbjct: 94 NCTPEFQANEVRKKFEQGFITDPVVM--SLNHTV--------------------GDVF-- 129
Query: 190 DQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLK 249
+AKN HGF G PVTE GK+G KL+GIVTSRD+DFL +
Sbjct: 130 -EAKNR---------------HGFSGIPVTETGKMGSKLVGIVTSRDIDFL-TEKDYSTY 172
Query: 250 IEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYP 309
+ +VMT +E++ A AG++L+EAN IL++SKKGKLPI+ND EL+A+IARTDLKK+RDYP
Sbjct: 173 LSEVMTKRDELVVAPAGVTLKEANEILQRSKKGKLPIVNDSDELVAIIARTDLKKNRDYP 232
Query: 310 DSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEY 369
+SKD QL+ GAAIGTRE DK RL LL+QAGVDVV+LDSSQGNS+YQI MI +IK++Y
Sbjct: 233 LASKDCRKQLLCGAAIGTREDDKYRLDLLTQAGVDVVVLDSSQGNSVYQINMIHYIKQKY 292
Query: 370 PDMQVIGGNVLFGYQPRATLLNFI-YQIEMIKF--------IKKEYPDMQVIGR-NGTAV 419
P++QV+GGNV+ Q + N I ++ ++ I +E + GR GTAV
Sbjct: 293 PELQVVGGNVVTAAQAK----NLIDAGVDALRVGMGCGSICITQE---VMACGRPQGTAV 345
Query: 420 YRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVR 479
Y+VAEYA R GVPVIADGG+Q+VGHV+KALALGAST MMGSLLA T+EAPGEYFFSDGVR
Sbjct: 346 YKVAEYARRFGVPVIADGGIQTVGHVVKALALGASTVMMGSLLAATTEAPGEYFFSDGVR 405
Query: 480 LKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCG 539
LKKYRGMGSL+AM + ++ RYF +E DK+KVAQGVSG+I DKGS+ +F+PYL G
Sbjct: 406 LKKYRGMGSLDAMEKN---TSSQKRYF-SEGDKVKVAQGVSGSIQDKGSIHKFVPYLIAG 461
Query: 540 LKHGCQDIGAKSLSNLRAMMYSGELKFEKRTLCAQNEGSVHGLYSYEKRLF 590
++HGCQDIGAKSLS LR+MMYSGELK EKRT+ AQ EG VHGL+SYEKRL+
Sbjct: 462 IQHGCQDIGAKSLSILRSMMYSGELKLEKRTMSAQVEGGVHGLHSYEKRLY 512
|
Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Xenopus tropicalis (taxid: 8364) EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 0EC: 5 |
| >sp|Q07152|IMDH_DROME Inosine-5'-monophosphate dehydrogenase OS=Drosophila melanogaster GN=ras PE=1 SV=1 | Back alignment and function description |
|---|
Score = 520 bits (1338), Expect = e-146, Method: Compositional matrix adjust.
Identities = 291/557 (52%), Positives = 357/557 (64%), Gaps = 116/557 (20%)
Query: 75 DFLENSANMDLKIEK-DLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIG 133
DFL +D E+ DLSSPLTK +TL APLVSSPMDTVTES+MAIAMALCGGIG I
Sbjct: 56 DFLILPGYIDFTAEEVDLSSPLTKSLTLRAPLVSSPMDTVTESEMAIAMALCGGIGI-IH 114
Query: 134 TREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAK 193
+Y Q +++++ K+ P + + T+
Sbjct: 115 HNCTPEY------------------QALEVHKVKKYKHGFMRDPSV------MSPTNTVG 150
Query: 194 NLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKV 253
++++A +GF G+PVTENGKLG KLLG+VTSRD+DF EN ++ + +
Sbjct: 151 DVLEA---------RRKNGFTGYPVTENGKLGGKLLGMVTSRDIDFRENQP--EVLLADI 199
Query: 254 MTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSK 313
MT E+++A GI+L AN ILEKSKKGKLPI+N GEL+A+IARTDLKK+R YP++SK
Sbjct: 200 MTT--ELVTAPNGINLPTANAILEKSKKGKLPIVNQAGELVAMIARTDLKKARSYPNASK 257
Query: 314 DENNQLIVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQ 373
D N QL+VGAAIGTR DK RL LL GVDV+ILDSSQGNS+Y
Sbjct: 258 DSNKQLLVGAAIGTRSEDKARLALLVANGVDVIILDSSQGNSVY---------------- 301
Query: 374 VIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRN------------------ 415
Q+EMIK+IK+ YP++QVIG N
Sbjct: 302 ---------------------QVEMIKYIKETYPELQVIGGNVVTRAQAKNLIDAGVDGL 340
Query: 416 ----------------------GTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGA 453
TAVY+V+ YA + GVPVIADGG+QS+GH++KA+ALGA
Sbjct: 341 RVGMGSGSICITQEVMACGCPQATAVYQVSTYARQFGVPVIADGGIQSIGHIVKAIALGA 400
Query: 454 STAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKL 513
S MMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAM R D AAM RY+HNEMDK+
Sbjct: 401 SAVMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMERGDAKGAAMSRYYHNEMDKM 460
Query: 514 KVAQGVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRAMMYSGELKFEKRTLCA 573
KVAQGVSG+IVDKGSVLR+LPYL+CGL+H CQDIGA S++ LR M+Y+G+L+F KRT A
Sbjct: 461 KVAQGVSGSIVDKGSVLRYLPYLECGLQHSCQDIGANSINKLRDMIYNGQLRFMKRTHSA 520
Query: 574 QNEGSVHGLYSYEKRLF 590
Q EG+VHGL+SYEKRLF
Sbjct: 521 QLEGNVHGLFSYEKRLF 537
|
Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Drosophila melanogaster (taxid: 7227) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 EC: 5 |
| >sp|A0JNA3|IMDH1_BOVIN Inosine-5'-monophosphate dehydrogenase 1 OS=Bos taurus GN=IMPDH1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 519 bits (1337), Expect = e-146, Method: Compositional matrix adjust.
Identities = 288/527 (54%), Positives = 370/527 (70%), Gaps = 57/527 (10%)
Query: 75 DFLENSANMDLKI-EKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIG 133
DFL +D E DL+S LT+KITL PL+SSPMDTVTE+DMAIAMAL GGIG
Sbjct: 34 DFLILPGFIDFTADEVDLTSALTRKITLKTPLISSPMDTVTEADMAIAMALMGGIGF--- 90
Query: 134 TREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAK 193
+ Q N + +++ K+ + D V+ + D
Sbjct: 91 ----------------IHHNCTPEFQANEVRKVK--KFEQGFITDPVVLSPSHTVGD--- 129
Query: 194 NLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKV 253
+++A + HGF G P+TE G +G KL+GIVTSRD+DFL + L + +V
Sbjct: 130 -VLEAKIR---------HGFSGIPITETGTMGSKLVGIVTSRDIDFLAEKDHTTL-LSEV 178
Query: 254 MTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSK 313
MT NE++ A AG++L+EAN IL++SKKGKLPI+ND+ EL+A+IARTDLKK+RDYP +SK
Sbjct: 179 MTPRNELVVAPAGVTLKEANEILQRSKKGKLPIVNDRDELVAIIARTDLKKNRDYPLASK 238
Query: 314 DENNQLIVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQ 373
D + QL+ GAA+GTRE DK RL LL+QAG DV++LDSSQGNS+YQI M+ +IK++YP +Q
Sbjct: 239 DSHKQLLCGAAVGTREDDKYRLDLLTQAGADVIVLDSSQGNSVYQIAMVHYIKQKYPHLQ 298
Query: 374 VIGGNVLFGYQPRATLLNFI-YQIEMIKF--------IKKEYPDMQVIGR-NGTAVYRVA 423
VIGGNV+ Q + N I ++ ++ I +E + GR GTAVY+VA
Sbjct: 299 VIGGNVVTAAQAK----NLIDAGVDGLRVGMGCGSICITQE---VMACGRPQGTAVYKVA 351
Query: 424 EYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKY 483
EYA R GVPVIADGG+Q+VGHV+KALALGAST MMGSLLA T+EAPGEYFFSDGVRLKKY
Sbjct: 352 EYARRFGVPVIADGGIQTVGHVVKALALGASTVMMGSLLAATTEAPGEYFFSDGVRLKKY 411
Query: 484 RGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCGLKHG 543
RGMGSL+AM + +++ RYF +E DK+K+AQGVSG+I DKGS+ +F+PYL G++HG
Sbjct: 412 RGMGSLDAMEKS---SSSQKRYF-SEGDKVKIAQGVSGSIQDKGSIQKFVPYLIAGIQHG 467
Query: 544 CQDIGAKSLSNLRAMMYSGELKFEKRTLCAQNEGSVHGLYSYEKRLF 590
CQDIGA+SLS LR+MMYSGELKFEKRT+ AQ EG VHGL+SYEKRL+
Sbjct: 468 CQDIGARSLSVLRSMMYSGELKFEKRTMSAQIEGGVHGLHSYEKRLY 514
|
Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Could also have a single-stranded nucleic acid-binding activity and could play a role in RNA and/or DNA metabolism. It may also have a role in the development of malignancy and the growth progression of some tumors. Bos taurus (taxid: 9913) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 EC: 5 |
| >sp|Q5RGV1|IMDH3_DANRE Inosine-5'-monophosphate dehydrogenase 1b OS=Danio rerio GN=impdh1b PE=2 SV=1 | Back alignment and function description |
|---|
Score = 515 bits (1327), Expect = e-145, Method: Compositional matrix adjust.
Identities = 288/527 (54%), Positives = 369/527 (70%), Gaps = 57/527 (10%)
Query: 75 DFLENSANMDLKI-EKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIG 133
DFL +D E DL+S LTKKITL PL+SSPMDTVTES MAIAMAL GGIG
Sbjct: 34 DFLILPGFIDFTSDEVDLTSALTKKITLKTPLISSPMDTVTESSMAIAMALMGGIGI--- 90
Query: 134 TREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAK 193
+ Q N + +++ ++ + D V+ + D
Sbjct: 91 ----------------IHHNCTPEFQANEVRKVK--RFEQGFITDPVVLSPHHTVGD--- 129
Query: 194 NLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKV 253
+++A V HGF G P+TE GK+G KL+GIVTSRD+DFL N + +E+
Sbjct: 130 -VLEAKVR---------HGFSGIPITETGKMGSKLVGIVTSRDIDFLSEKDN-NKYLEEA 178
Query: 254 MTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSK 313
MT +++ A AG++L+EAN IL++SKKGKLPI+NDK EL+A+IARTDLKK+RDYP +SK
Sbjct: 179 MTKREDLVVAPAGVTLKEANDILQRSKKGKLPIVNDKDELVAIIARTDLKKNRDYPLASK 238
Query: 314 DENNQLIVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQ 373
D QL+ GAAIGTRE DK RL LL+Q+GVD+V+LDSSQGNS+YQI MI +IK++YP++Q
Sbjct: 239 DSRKQLLCGAAIGTREDDKYRLDLLTQSGVDMVVLDSSQGNSVYQINMIHYIKQKYPELQ 298
Query: 374 VIGGNVLFGYQPRATLLNFI-YQIEMIKF--------IKKEYPDMQVIGR-NGTAVYRVA 423
V+GGNV+ Q + N I ++ ++ I +E + GR GT+VY+VA
Sbjct: 299 VVGGNVVTAAQAK----NLIDAGVDALRVGMGCGSICITQE---VMACGRPQGTSVYKVA 351
Query: 424 EYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKY 483
EYA R GVPVIADGG+Q+VGHV+KAL+LGAST MMGSLLA T+EAPGEYFFSDGVRLKKY
Sbjct: 352 EYARRFGVPVIADGGIQTVGHVVKALSLGASTVMMGSLLAATTEAPGEYFFSDGVRLKKY 411
Query: 484 RGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCGLKHG 543
RGMGSL+AM + ++ RYF +E DK+KVAQGVSG++ DKGS+ +F+PYL G++HG
Sbjct: 412 RGMGSLDAMEKN---TSSQKRYF-SEGDKVKVAQGVSGSVQDKGSIHKFVPYLIAGIQHG 467
Query: 544 CQDIGAKSLSNLRAMMYSGELKFEKRTLCAQNEGSVHGLYSYEKRLF 590
CQDIGAKSLS LR+MMYSGELKFEKRT+ AQ EG VHGL+S+EKRL+
Sbjct: 468 CQDIGAKSLSVLRSMMYSGELKFEKRTMSAQVEGGVHGLHSFEKRLY 514
|
Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Danio rerio (taxid: 7955) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 EC: 5 |
| >sp|B0UXP9|IMDH2_DANRE Inosine-5'-monophosphate dehydrogenase 2 OS=Danio rerio GN=impdh2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 514 bits (1323), Expect = e-145, Method: Compositional matrix adjust.
Identities = 282/524 (53%), Positives = 367/524 (70%), Gaps = 51/524 (9%)
Query: 75 DFLENSANMDLKIEK-DLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIG 133
DFL +D ++ DL+S LTK+IT+ PL+SSPMDTVTES MAIAMAL GGIG
Sbjct: 34 DFLILPGYIDFTADQVDLTSALTKQITMKTPLISSPMDTVTESGMAIAMALTGGIGF--- 90
Query: 134 TREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAK 193
+ Q N + +++ +Y + D V+ N ++ +
Sbjct: 91 ----------------IHHNCTPEFQANEVRKVK--RYEQGFITDPVVMSPN----ERVR 128
Query: 194 NLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKV 253
++ A HGFCG P+T+NG++G +L+GI++SRD+DFL+ S + DL + +V
Sbjct: 129 DVFQA---------KARHGFCGIPITDNGQMGGRLVGIISSRDIDFLKESEH-DLPLSEV 178
Query: 254 MTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSK 313
MT +++ A AG++L+EAN IL++SKKGKLPI+N++G L+A+IARTDLKK+RD+P +SK
Sbjct: 179 MTKREDLVVAPAGVTLKEANEILQRSKKGKLPIVNEEGCLVAIIARTDLKKNRDFPLASK 238
Query: 314 DENNQLIVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQ 373
D QL+ GAAIGT DK RL LL+QAGVDVV+LDSSQGNSI+QI MIK+IK++YP++Q
Sbjct: 239 DSRKQLLCGAAIGTHNDDKYRLDLLAQAGVDVVVLDSSQGNSIFQINMIKYIKEKYPNVQ 298
Query: 374 VIGGNVLFGYQPRATLLNFI------YQIEMIKFIKKEYPDMQVIGR-NGTAVYRVAEYA 426
VIGGNV+ Q + N I ++ M ++ GR TAVY+V+EYA
Sbjct: 299 VIGGNVVTAAQAK----NLIDAGADALRVGMGSGSICITQEVLACGRPQATAVYKVSEYA 354
Query: 427 SRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGM 486
R GVPVIADGG+Q+VGH+ KALALGAST MMGSLLA TSEAPGEYFFSDG+RLKKYRGM
Sbjct: 355 RRFGVPVIADGGIQTVGHIAKALALGASTVMMGSLLAATSEAPGEYFFSDGIRLKKYRGM 414
Query: 487 GSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCGLKHGCQD 546
GSL+AM + G + RYF +E DK+KVAQGVSGA+ DKGS+ +F+PYL G++H CQD
Sbjct: 415 GSLDAMDKNLG---SQTRYF-SESDKIKVAQGVSGAVQDKGSIHKFVPYLLVGIQHSCQD 470
Query: 547 IGAKSLSNLRAMMYSGELKFEKRTLCAQNEGSVHGLYSYEKRLF 590
IGAKSL+ LRAMMYSGEL+FEKRT+ AQ EG VH L+SYEKRLF
Sbjct: 471 IGAKSLTQLRAMMYSGELRFEKRTMSAQMEGGVHSLHSYEKRLF 514
|
Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Danio rerio (taxid: 7955) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 EC: 5 |
| >sp|P50096|IMDH1_MOUSE Inosine-5'-monophosphate dehydrogenase 1 OS=Mus musculus GN=Impdh1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 513 bits (1322), Expect = e-144, Method: Compositional matrix adjust.
Identities = 286/527 (54%), Positives = 369/527 (70%), Gaps = 57/527 (10%)
Query: 75 DFLENSANMD-LKIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIG 133
DFL +D + E DL+S LT+KITL PL+SSPMDTVTE+DMAIAMAL GGIG
Sbjct: 34 DFLILPGFIDFIADEVDLTSALTRKITLKTPLISSPMDTVTEADMAIAMALMGGIGF--- 90
Query: 134 TREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAK 193
+ Q N + +++ K+ + D V+ + D
Sbjct: 91 ----------------IHHNCTPEFQANEVRKVK--KFEQGFITDPVVLSPSHTVGD--- 129
Query: 194 NLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKV 253
+++A + HGF G P+T G +G KL+GIVTSRD+DFL + L + +V
Sbjct: 130 -VLEAKIQ---------HGFSGIPITATGTMGSKLVGIVTSRDIDFLAEKDHTTL-LSEV 178
Query: 254 MTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSK 313
MT E++ A AG++L+EAN IL++SKKGKLPI+ND+ EL+A+IARTDLKK+RDYP +SK
Sbjct: 179 MTPRVELVVAPAGVTLKEANEILQRSKKGKLPIVNDQDELVAIIARTDLKKNRDYPLASK 238
Query: 314 DENNQLIVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQ 373
D + QL+ GAA+GTRE DK RL LL+QAG DV++LDSSQGNS+YQI M+ +IK++YP +Q
Sbjct: 239 DSHKQLLCGAAVGTREDDKYRLDLLTQAGADVIVLDSSQGNSVYQIAMVHYIKQKYPHLQ 298
Query: 374 VIGGNVLFGYQPRATLLNFI-YQIEMIKF--------IKKEYPDMQVIGR-NGTAVYRVA 423
VIGGNV+ Q + N I ++ ++ I +E + GR GTAVY+VA
Sbjct: 299 VIGGNVVTAAQAK----NLIDAGVDGLRVGMGCGSICITQE---VMACGRPQGTAVYKVA 351
Query: 424 EYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKY 483
EYA R GVPVIADGG+Q+VGHV+KALALGAST MMGSLLA T+EAPGEYFFSDGVRLKKY
Sbjct: 352 EYARRFGVPVIADGGIQTVGHVVKALALGASTVMMGSLLAATTEAPGEYFFSDGVRLKKY 411
Query: 484 RGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCGLKHG 543
RGMGSL+AM + +++ RYF +E DK+K+AQGVSG+I DKGS+ +F+PYL G++HG
Sbjct: 412 RGMGSLDAMEKS---SSSQKRYF-SEGDKVKIAQGVSGSIQDKGSIQKFVPYLIAGIQHG 467
Query: 544 CQDIGAKSLSNLRAMMYSGELKFEKRTLCAQNEGSVHGLYSYEKRLF 590
CQDIGA+SLS LR+MMYSGELKFEKRT+ AQ EG VHGL+SYEKRL+
Sbjct: 468 CQDIGAQSLSVLRSMMYSGELKFEKRTMSAQIEGGVHGLHSYEKRLY 514
|
Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Could also have a single-stranded nucleic acid-binding activity and could play a role in RNA and/or DNA metabolism. It may also have a role in the development of malignancy and the growth progression of some tumors. Mus musculus (taxid: 10090) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 EC: 5 |
| >sp|D3ZLZ7|IMDH1_RAT Inosine-5'-monophosphate dehydrogenase 1 OS=Rattus norvegicus GN=Impdh1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 513 bits (1321), Expect = e-144, Method: Compositional matrix adjust.
Identities = 286/527 (54%), Positives = 369/527 (70%), Gaps = 57/527 (10%)
Query: 75 DFLENSANMD-LKIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIG 133
DFL +D + E DL+S LT+KITL PL+SSPMDTVTE+DMAIAMAL GGIG
Sbjct: 34 DFLILPGFIDFIADEVDLTSALTRKITLKTPLISSPMDTVTEADMAIAMALMGGIGF--- 90
Query: 134 TREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAK 193
+ Q N + +++ K+ + D V+ + D
Sbjct: 91 ----------------IHHNCTPEFQANEVRKVK--KFEQGFITDPVVLSPSHTVGD--- 129
Query: 194 NLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKV 253
+++A + HGF G P+T G +G KL+GIVTSRD+DFL + L + +V
Sbjct: 130 -VLEAKIQ---------HGFSGIPITATGTMGSKLVGIVTSRDIDFLAEKDHTTL-LSEV 178
Query: 254 MTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSK 313
MT E++ A AG++L+EAN IL++SKKGKLPI+ND+ EL+A+IARTDLKK+RDYP +SK
Sbjct: 179 MTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVNDQDELVAIIARTDLKKNRDYPLASK 238
Query: 314 DENNQLIVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQ 373
D + QL+ GAA+GTRE DK RL LL+QAG DV++LDSSQGNS+YQI M+ +IK++YP +Q
Sbjct: 239 DSHKQLLCGAAVGTREDDKYRLDLLTQAGADVIVLDSSQGNSVYQIAMVHYIKQKYPHLQ 298
Query: 374 VIGGNVLFGYQPRATLLNFI-YQIEMIKF--------IKKEYPDMQVIGR-NGTAVYRVA 423
VIGGNV+ Q + N I ++ ++ I +E + GR GTAVY+VA
Sbjct: 299 VIGGNVVTAAQAK----NLIDAGVDGLRVGMGCGSICITQE---VMACGRPQGTAVYKVA 351
Query: 424 EYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKY 483
EYA R GVPVIADGG+Q+VGHV+KALALGAST MMGSLLA T+EAPGEYFFSDGVRLKKY
Sbjct: 352 EYARRFGVPVIADGGIQTVGHVVKALALGASTVMMGSLLAATTEAPGEYFFSDGVRLKKY 411
Query: 484 RGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCGLKHG 543
RGMGSL+AM + +++ RYF +E DK+K+AQGVSG+I DKGS+ +F+PYL G++HG
Sbjct: 412 RGMGSLDAMEKS---SSSQKRYF-SEGDKVKIAQGVSGSIQDKGSIQKFVPYLIAGIQHG 467
Query: 544 CQDIGAKSLSNLRAMMYSGELKFEKRTLCAQNEGSVHGLYSYEKRLF 590
CQDIGA+SLS LR+MMYSGELKFEKRT+ AQ EG VHGL+SYEKRL+
Sbjct: 468 CQDIGAQSLSVLRSMMYSGELKFEKRTMSAQIEGGVHGLHSYEKRLY 514
|
Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Could also have a single-stranded nucleic acid-binding activity and could play a role in RNA and/or DNA metabolism. It may also have a role in the development of malignancy and the growth progression of some tumors. Rattus norvegicus (taxid: 10116) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 EC: 5 |
| >sp|P12268|IMDH2_HUMAN Inosine-5'-monophosphate dehydrogenase 2 OS=Homo sapiens GN=IMPDH2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 513 bits (1320), Expect = e-144, Method: Compositional matrix adjust.
Identities = 285/527 (54%), Positives = 367/527 (69%), Gaps = 57/527 (10%)
Query: 75 DFLENSANMDLKIEK-DLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIG 133
DFL +D ++ DL+S LTKKITL PLVSSPMDTVTE+ MAIAMAL GGIG
Sbjct: 34 DFLILPGYIDFTADQVDLTSALTKKITLKTPLVSSPMDTVTEAGMAIAMALTGGIGF--- 90
Query: 134 TREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAK 193
+ Q N + +++ KY + D V+ D+ +
Sbjct: 91 ----------------IHHNCTPEFQANEVRKVK--KYEQGFITDPVVLS----PKDRVR 128
Query: 194 NLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKV 253
++ +A HGFCG P+T+ G++G +L+GI++SRD+DFL+ + D +E++
Sbjct: 129 DVFEA---------KARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKEEEH-DCFLEEI 178
Query: 254 MTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSK 313
MT +++ A AGI+L+EAN IL++SKKGKLPI+N+ EL+A+IARTDLKK+RDYP +SK
Sbjct: 179 MTKREDLVVAPAGITLKEANEILQRSKKGKLPIVNEDDELVAIIARTDLKKNRDYPLASK 238
Query: 314 DENNQLIVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQ 373
D QL+ GAAIGT E DK RL LL+QAGVDVV+LDSSQGNSI+QI MIK+IK +YP++Q
Sbjct: 239 DAKKQLLCGAAIGTHEDDKYRLDLLAQAGVDVVVLDSSQGNSIFQINMIKYIKDKYPNLQ 298
Query: 374 VIGGNVLFGYQPRATLLNFI-YQIEMIKF--------IKKEYPDMQVIGR-NGTAVYRVA 423
VIGGNV+ Q + N I ++ ++ I +E + GR TAVY+V+
Sbjct: 299 VIGGNVVTAAQAK----NLIDAGVDALRVGMGSGSICITQE---VLACGRPQATAVYKVS 351
Query: 424 EYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKY 483
EYA R GVPVIADGG+Q+VGH+ KALALGAST MMGSLLA T+EAPGEYFFSDG+RLKKY
Sbjct: 352 EYARRFGVPVIADGGIQNVGHIAKALALGASTVMMGSLLAATTEAPGEYFFSDGIRLKKY 411
Query: 484 RGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCGLKHG 543
RGMGSL+AM D ++ +RYF +E DK+KVAQGVSGA+ DKGS+ +F+PYL G++H
Sbjct: 412 RGMGSLDAM---DKHLSSQNRYF-SEADKIKVAQGVSGAVQDKGSIHKFVPYLIAGIQHS 467
Query: 544 CQDIGAKSLSNLRAMMYSGELKFEKRTLCAQNEGSVHGLYSYEKRLF 590
CQDIGAKSL+ +RAMMYSGELKFEKRT AQ EG VH L+SYEKRLF
Sbjct: 468 CQDIGAKSLTQVRAMMYSGELKFEKRTSSAQVEGGVHSLHSYEKRLF 514
|
Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Could also have a single-stranded nucleic acid-binding activity and could play a role in RNA and/or DNA metabolism. It may also have a role in the development of malignancy and the growth progression of some tumors. Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 EC: 5 |
| >sp|E9PU28|IMDH2_RAT Inosine-5'-monophosphate dehydrogenase 2 OS=Rattus norvegicus GN=Impdh2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 512 bits (1319), Expect = e-144, Method: Compositional matrix adjust.
Identities = 284/527 (53%), Positives = 368/527 (69%), Gaps = 57/527 (10%)
Query: 75 DFLENSANMDLKIEK-DLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIG 133
DFL +D ++ DL+S LTKKITL PLVSSPMDTVTE+ MAIAMAL GGIG
Sbjct: 34 DFLILPGYIDFTADQVDLTSALTKKITLKTPLVSSPMDTVTEAGMAIAMALTGGIGF--- 90
Query: 134 TREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAK 193
+ Q N + +++ KY + D V+ D+ +
Sbjct: 91 ----------------IHHNCTPEFQANEVRKVK--KYEQGFITDPVVLS----PKDRVR 128
Query: 194 NLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKV 253
++ +A HGFCG P+T+ G++G +L+GI++SRD+DFL+ + D +E++
Sbjct: 129 DVFEA---------KARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKEEEH-DRFLEEI 178
Query: 254 MTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSK 313
MT +++ A AG++L+EAN IL++SKKGKLPI+N+ EL+A+IARTDLKK+RDYP +SK
Sbjct: 179 MTKREDLVVAPAGVTLKEANEILQRSKKGKLPIVNESDELVAIIARTDLKKNRDYPLASK 238
Query: 314 DENNQLIVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQ 373
D QL+ GAAIGT E DK RL LL+ AGVDVV+LDSSQGNSI+QI MIK+IK++YP++Q
Sbjct: 239 DTKKQLLCGAAIGTHEDDKYRLDLLALAGVDVVVLDSSQGNSIFQINMIKYIKEKYPNLQ 298
Query: 374 VIGGNVLFGYQPRATLLNFI-YQIEMIKF--------IKKEYPDMQVIGR-NGTAVYRVA 423
VIGGNV+ Q + N I ++ ++ I +E + GR TAVY+V+
Sbjct: 299 VIGGNVVTAAQAK----NLIDAGVDALRVGMGSGSICITQE---VLACGRPQATAVYKVS 351
Query: 424 EYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKY 483
EYA R GVPVIADGG+Q+VGH+ KALALGAST MMGSLLA T+EAPGEYFFSDG+RLKKY
Sbjct: 352 EYARRFGVPVIADGGIQNVGHIAKALALGASTVMMGSLLAATTEAPGEYFFSDGIRLKKY 411
Query: 484 RGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCGLKHG 543
RGMGSL+AM D ++ +RYF +E DK+KVAQGVSGA+ DKGS+ +F+PYL G++H
Sbjct: 412 RGMGSLDAM---DKHLSSQNRYF-SEADKIKVAQGVSGAVQDKGSIHKFVPYLIAGIQHS 467
Query: 544 CQDIGAKSLSNLRAMMYSGELKFEKRTLCAQNEGSVHGLYSYEKRLF 590
CQDIGAKSL+ +RAMMYSGELKFEKRT AQ EG VHGL+SYEKRLF
Sbjct: 468 CQDIGAKSLTQVRAMMYSGELKFEKRTSSAQVEGGVHGLHSYEKRLF 514
|
Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Could also have a single-stranded nucleic acid-binding activity and could play a role in RNA and/or DNA metabolism. It may also have a role in the development of malignancy and the growth progression of some tumors. Rattus norvegicus (taxid: 10116) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 EC: 5 |
| >sp|F7CYY5|IMDH2_XENTR Inosine-5'-monophosphate dehydrogenase 2 OS=Xenopus tropicalis GN=impdh2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 510 bits (1314), Expect = e-144, Method: Compositional matrix adjust.
Identities = 286/527 (54%), Positives = 360/527 (68%), Gaps = 56/527 (10%)
Query: 75 DFLENSANMDLKIEK-DLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIG 133
DFL +D ++ DL+S LTKKITL P+VSSPMDTVTE+ MAIAMAL GGIG
Sbjct: 34 DFLILPGYIDFTADQVDLTSALTKKITLKTPMVSSPMDTVTEASMAIAMALTGGIG---- 89
Query: 134 TREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTT--DQ 191
+ +Q ++ +KK + I VV + +
Sbjct: 90 ---------------------IMHHNCTPEFQANEVRKVKKY--EQGFITDPVVLSPKHR 126
Query: 192 AKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIE 251
+++ +A HGFCG P+TENGK+G KL GI++SRD+DFL+ S DL +
Sbjct: 127 VRDVFEA---------KARHGFCGIPITENGKMGSKLAGIISSRDIDFLK-SEEHDLALS 176
Query: 252 KVMTNVNEIISAQAGISLEEANVILEKSKKGKL-PILNDKGELIALIARTDLKKSRDYPD 310
++MT +++ A AG++L+EAN IL++SKKGKL PI+N EL+A+IARTDLKK+RDYP
Sbjct: 177 EIMTRREDLVVAPAGVTLKEANEILQRSKKGKLLPIVNGNDELVAIIARTDLKKNRDYPL 236
Query: 311 SSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYP 370
+SKD QL+ GAAIGT E DK RL LL QAGVD V+LDSSQGNSI+QI MIKFIK++Y
Sbjct: 237 ASKDAKKQLLCGAAIGTHEDDKYRLDLLVQAGVDAVVLDSSQGNSIFQINMIKFIKEKYQ 296
Query: 371 DMQVIGGNVLFGYQPRATLLNFI------YQIEMIKFIKKEYPDMQVIGR-NGTAVYRVA 423
D+QVI GNV+ Q + N I ++ M ++ GR TAVY+V+
Sbjct: 297 DLQVIAGNVVTAAQAK----NLIDAGADALRVGMGSGSICITQEVLACGRPQATAVYKVS 352
Query: 424 EYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKY 483
EYA R GVPVIADGG+Q+VGH+ KALALGAST MMGSLLA T+EAPGEYFFSDG+RLKKY
Sbjct: 353 EYARRFGVPVIADGGIQTVGHIAKALALGASTVMMGSLLAATTEAPGEYFFSDGIRLKKY 412
Query: 484 RGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCGLKHG 543
RGMGSL+AM D ++ RYF +E DK+KVAQGVSGA+ DKGS+ +F+PYL G++H
Sbjct: 413 RGMGSLDAM---DKNVSSQKRYF-SEADKIKVAQGVSGAVQDKGSIHKFIPYLIAGIQHS 468
Query: 544 CQDIGAKSLSNLRAMMYSGELKFEKRTLCAQNEGSVHGLYSYEKRLF 590
CQDIGAKSL+ +RAMMYSGELKFEKRT+ AQ EG VHGL+SYEKRLF
Sbjct: 469 CQDIGAKSLTQVRAMMYSGELKFEKRTMSAQVEGGVHGLHSYEKRLF 515
|
Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Xenopus tropicalis (taxid: 8364) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 EC: 5 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 590 | ||||||
| 383863705 | 523 | PREDICTED: inosine-5'-monophosphate dehy | 0.788 | 0.889 | 0.616 | 1e-168 | |
| 66508366 | 523 | PREDICTED: inosine-5'-monophosphate dehy | 0.788 | 0.889 | 0.612 | 1e-167 | |
| 350417357 | 523 | PREDICTED: inosine-5'-monophosphate dehy | 0.788 | 0.889 | 0.604 | 1e-166 | |
| 332027369 | 521 | Inosine-5'-monophosphate dehydrogenase [ | 0.788 | 0.892 | 0.606 | 1e-166 | |
| 340714347 | 525 | PREDICTED: inosine-5'-monophosphate dehy | 0.788 | 0.885 | 0.604 | 1e-166 | |
| 193716221 | 511 | PREDICTED: inosine-5'-monophosphate dehy | 0.791 | 0.913 | 0.609 | 1e-165 | |
| 307207027 | 523 | Inosine-5'-monophosphate dehydrogenase [ | 0.840 | 0.948 | 0.581 | 1e-164 | |
| 307184254 | 523 | Inosine-5'-monophosphate dehydrogenase [ | 0.847 | 0.956 | 0.576 | 1e-163 | |
| 350419125 | 572 | PREDICTED: inosine-5'-monophosphate dehy | 0.798 | 0.823 | 0.584 | 1e-162 | |
| 91093403 | 513 | PREDICTED: similar to inosine-5-monophos | 0.784 | 0.902 | 0.572 | 1e-155 |
| >gi|383863705|ref|XP_003707320.1| PREDICTED: inosine-5'-monophosphate dehydrogenase-like isoform 1 [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 597 bits (1538), Expect = e-168, Method: Compositional matrix adjust.
Identities = 315/511 (61%), Positives = 381/511 (74%), Gaps = 46/511 (9%)
Query: 88 EKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQ 147
E DL SPLTKKI L APLVSSPMDTVTESDMAIAMALCGGIG I +Y
Sbjct: 51 EVDLLSPLTKKIMLKAPLVSSPMDTVTESDMAIAMALCGGIG-IIHHNCTPEY------- 102
Query: 148 AGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGLRVGS 207
Q N +++++ KY D V+ N +D +++ +
Sbjct: 103 -----------QANEVHKVK--KYKHGFIRDPVVLSPNHTVSD----VMNVKAE------ 139
Query: 208 HGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDL-KIEKVMTNVNEIISAQAG 266
HGF G P+T+ GK+G KLLGIVTSRD+DFLE+S N K+E +MT + +I+A AG
Sbjct: 140 ---HGFSGVPITDTGKVGGKLLGIVTSRDIDFLESSPNQQYTKLETIMTKLENLITATAG 196
Query: 267 ISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIG 326
++L+EANVILEKSKKGKLPI+N+KGEL++L+ARTDLKK+R YP++SKDEN QL+VGAAIG
Sbjct: 197 VTLQEANVILEKSKKGKLPIVNEKGELVSLMARTDLKKNRSYPNASKDENKQLLVGAAIG 256
Query: 327 TREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPR 386
TR DK+RL+LL +GVDV++LDSSQGNS YQIEMIK+IK EYP++QVI GNV+ Q +
Sbjct: 257 TRHTDKHRLQLLGASGVDVIVLDSSQGNSKYQIEMIKYIKSEYPELQVIAGNVVTTMQAK 316
Query: 387 ------ATLLNFIYQIEMIKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGV 439
A L I + ++ +GR TAVY+VAEYA R GVPVIADGG+
Sbjct: 317 NLIEAGADALRVGMGCGSICITQ----EVMAVGRPQATAVYKVAEYARRFGVPVIADGGI 372
Query: 440 QSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGA 499
QS+GH++K L+LGAST MMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAM+RKD
Sbjct: 373 QSIGHIIKGLSLGASTVMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMNRKDAQG 432
Query: 500 AAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRAMM 559
+AMDRYFHNEMDKLKVAQGVSG+IVDKG+VL+FLPYLQCG+KHGCQDIGAKS+S L++MM
Sbjct: 433 SAMDRYFHNEMDKLKVAQGVSGSIVDKGTVLKFLPYLQCGIKHGCQDIGAKSISALKSMM 492
Query: 560 YSGELKFEKRTLCAQNEGSVHGLYSYEKRLF 590
YSGELKFE+RT AQ EG+VH L+SYEKRLF
Sbjct: 493 YSGELKFERRTHSAQQEGNVHSLFSYEKRLF 523
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|66508366|ref|XP_623071.1| PREDICTED: inosine-5'-monophosphate dehydrogenase isoform 1 [Apis mellifera] gi|380025093|ref|XP_003696314.1| PREDICTED: inosine-5'-monophosphate dehydrogenase-like isoform 1 [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 594 bits (1532), Expect = e-167, Method: Compositional matrix adjust.
Identities = 313/511 (61%), Positives = 381/511 (74%), Gaps = 46/511 (9%)
Query: 88 EKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQ 147
E DL SPLTKKI + APLVSSPMDTVTESDMAIAMALCGGIG I +Y
Sbjct: 51 EVDLLSPLTKKIMIKAPLVSSPMDTVTESDMAIAMALCGGIG-IIHHNCTPEY------- 102
Query: 148 AGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGLRVGS 207
Q N +++++ KY D V+ N K++++ +
Sbjct: 103 -----------QANEVHKVK--KYKHGFIRDPVVLSPN----HTVKDVLNVKAE------ 139
Query: 208 HGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMD-LKIEKVMTNVNEIISAQAG 266
HGF G P+T GK+G KLLGIVTSRD+DFLE++ N +K+E +MT + +I+A AG
Sbjct: 140 ---HGFSGIPITNTGKVGGKLLGIVTSRDIDFLESTTNQQYIKLETIMTKLENLITATAG 196
Query: 267 ISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIG 326
++L+EAN+ILEKSKKGKLPI+N+KGEL++L+ARTDLKK+R+YP++SKDEN QL+VGAAIG
Sbjct: 197 VTLQEANIILEKSKKGKLPIVNEKGELVSLMARTDLKKNRNYPNASKDENKQLLVGAAIG 256
Query: 327 TREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPR 386
TR ADK RL+LL+ AGVDV++LDSSQGNS YQI+MIK+IK EYP++QVI GN + Q +
Sbjct: 257 TRNADKQRLQLLAVAGVDVIVLDSSQGNSKYQIDMIKYIKSEYPELQVIAGNAVTTMQAK 316
Query: 387 ------ATLLNFIYQIEMIKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGV 439
A L I + ++ +GR TAVY+VAEYA + GVPVIADGG+
Sbjct: 317 NLIEAGADALRVGMGCGSICITQ----EVMAVGRPQATAVYKVAEYARKFGVPVIADGGI 372
Query: 440 QSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGA 499
QS+GH++K L+LGAST MMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAM+RKD
Sbjct: 373 QSIGHIIKGLSLGASTVMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMNRKDAQG 432
Query: 500 AAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRAMM 559
+AMDRYFHNEMDKLKVAQGVSG+IVDKGSVL+FLPYL CG+KHGCQDIGAKSLS LR+MM
Sbjct: 433 SAMDRYFHNEMDKLKVAQGVSGSIVDKGSVLKFLPYLLCGIKHGCQDIGAKSLSTLRSMM 492
Query: 560 YSGELKFEKRTLCAQNEGSVHGLYSYEKRLF 590
YSGELKFE+RT AQ EG+VH L+SYEKRLF
Sbjct: 493 YSGELKFERRTHSAQQEGNVHSLFSYEKRLF 523
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350417357|ref|XP_003491383.1| PREDICTED: inosine-5'-monophosphate dehydrogenase-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 591 bits (1524), Expect = e-166, Method: Compositional matrix adjust.
Identities = 309/511 (60%), Positives = 381/511 (74%), Gaps = 46/511 (9%)
Query: 88 EKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQ 147
E DL SPLTKKI + APLVSSPMDTVTESDMAIAMALCGGIG I +Y
Sbjct: 51 EVDLLSPLTKKIMIKAPLVSSPMDTVTESDMAIAMALCGGIG-IIHHNCTPEY------- 102
Query: 148 AGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGLRVGS 207
Q N +++++ KY D V+ N K++++ +
Sbjct: 103 -----------QANEVHKVK--KYKHGFIRDPVVLSPN----HTVKDVLNVKAE------ 139
Query: 208 HGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMD-LKIEKVMTNVNEIISAQAG 266
HGF G P+T GK+G KLLGI+TSRD+DFLE++ N +K+E +MT + +I+A AG
Sbjct: 140 ---HGFSGVPITNTGKVGGKLLGIITSRDIDFLESTTNQQYIKLESIMTKLENLITATAG 196
Query: 267 ISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIG 326
++L+EANVILEKSKKGKLPI+N+KGEL++L+ARTDLKK+R YP++SKDEN QL+VGAAIG
Sbjct: 197 VTLQEANVILEKSKKGKLPIVNEKGELVSLMARTDLKKNRSYPNASKDENKQLLVGAAIG 256
Query: 327 TREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPR 386
TR AD+ RL+ L+ AGVDV++LDSSQGNS YQI+MIK+IK EYP++QVI GNV+ Q +
Sbjct: 257 TRNADRQRLQHLTTAGVDVIVLDSSQGNSKYQIDMIKYIKSEYPELQVIAGNVVTTMQAK 316
Query: 387 ------ATLLNFIYQIEMIKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGV 439
A L I + ++ +GR TAVY+VAEYA + GVP+IADGG+
Sbjct: 317 NLIEAGADALRVGMGCGSICITQ----EVMAVGRPQATAVYKVAEYARKFGVPIIADGGI 372
Query: 440 QSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGA 499
QS+GH++K+L+LGAST MMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAM+RKD
Sbjct: 373 QSIGHIIKSLSLGASTVMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMNRKDAHG 432
Query: 500 AAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRAMM 559
+AMDRYFHNEMDKLKVAQGVSG+IVDKG+VL+FLPYL CG+KHGCQDIGAKS+S LR+MM
Sbjct: 433 SAMDRYFHNEMDKLKVAQGVSGSIVDKGTVLKFLPYLLCGIKHGCQDIGAKSISTLRSMM 492
Query: 560 YSGELKFEKRTLCAQNEGSVHGLYSYEKRLF 590
YSGELKFE+RT AQ EG+VH L+SYEKRLF
Sbjct: 493 YSGELKFERRTHSAQQEGNVHSLFSYEKRLF 523
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332027369|gb|EGI67452.1| Inosine-5'-monophosphate dehydrogenase [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 590 bits (1521), Expect = e-166, Method: Compositional matrix adjust.
Identities = 310/511 (60%), Positives = 379/511 (74%), Gaps = 46/511 (9%)
Query: 88 EKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQ 147
E DL SPLTK+ITL APLVSSPMDTVTESDMAIAMAL GGIG A+
Sbjct: 49 EVDLLSPLTKRITLKAPLVSSPMDTVTESDMAIAMALSGGIGIIHHNCTAE--------- 99
Query: 148 AGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGLRVGS 207
Q N +++++ KY D V+ + D I+
Sbjct: 100 ----------YQANEVHKVK--KYKHGFIRDPVVLASHHTVNDVLNVKIE---------- 137
Query: 208 HGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLK-IEKVMTNVNEIISAQAG 266
HGF G PVT+ GK+G KLLGIVTSRD+DFLE N K + +MT + ++I+A AG
Sbjct: 138 ---HGFSGVPVTDTGKVGGKLLGIVTSRDIDFLERLPNYQHKSLSSIMTTLEDLITAPAG 194
Query: 267 ISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIG 326
++L+EANVILEKSKKGKLPI+N++GEL++L+ARTDLKK+R YP++SKDEN QL++GAAIG
Sbjct: 195 VTLQEANVILEKSKKGKLPIINERGELVSLMARTDLKKNRSYPNASKDENKQLLIGAAIG 254
Query: 327 TREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPR 386
TR+ADK+RL+LL AGVDVV+LDSSQGNS+YQI+MIK+IKK+YP++QVI GNV+ Q +
Sbjct: 255 TRDADKHRLELLVAAGVDVVVLDSSQGNSLYQIDMIKYIKKQYPNLQVIAGNVVTTKQAK 314
Query: 387 ATLLNFI------YQIEMIKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGV 439
N I +I M ++ +GR TAVY+V+EYA + G+PVIADGG+
Sbjct: 315 ----NLIEAGADALRIGMGSGSICITQEVMAVGRPQATAVYKVSEYARKFGIPVIADGGI 370
Query: 440 QSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGA 499
QS+GH++K L+LGAST MMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAM+RKD
Sbjct: 371 QSIGHIIKGLSLGASTVMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMNRKDAKG 430
Query: 500 AAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRAMM 559
+AMDRYFHNEMDKLKVAQGVSG+IVDKGSVL+FLPYL CG+KHGCQDIGAKSL+ LR+MM
Sbjct: 431 SAMDRYFHNEMDKLKVAQGVSGSIVDKGSVLKFLPYLTCGIKHGCQDIGAKSLTTLRSMM 490
Query: 560 YSGELKFEKRTLCAQNEGSVHGLYSYEKRLF 590
YSGELKFE+RT AQ EG+VH L+SYEKRL+
Sbjct: 491 YSGELKFERRTHSAQQEGNVHSLFSYEKRLY 521
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340714347|ref|XP_003395691.1| PREDICTED: inosine-5'-monophosphate dehydrogenase-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 590 bits (1520), Expect = e-166, Method: Compositional matrix adjust.
Identities = 309/511 (60%), Positives = 380/511 (74%), Gaps = 46/511 (9%)
Query: 88 EKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQ 147
E DL SPLTKKI + APLVSSPMDTVTESDMAIAMALCGGIG I +Y
Sbjct: 51 EVDLLSPLTKKIMIKAPLVSSPMDTVTESDMAIAMALCGGIG-IIHHNCTPEY------- 102
Query: 148 AGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGLRVGS 207
Q N +++++ KY D V+ N K++++ +
Sbjct: 103 -----------QANEVHKVK--KYKHGFIRDPVVLSPN----HTVKDVLNVKAE------ 139
Query: 208 HGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMD-LKIEKVMTNVNEIISAQAG 266
HGF G P+T GK+G KLLGI+TSRD+DFLE++ N +K+E +MT + +I+A AG
Sbjct: 140 ---HGFSGVPITNTGKVGGKLLGIITSRDIDFLESTTNQQYIKLESIMTKLENLITATAG 196
Query: 267 ISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIG 326
++L+EANVILEKSKKGKLPI+N+KGEL++L+ARTDLKK+R YP++SKDEN QL+VGAAIG
Sbjct: 197 VTLQEANVILEKSKKGKLPIVNEKGELVSLMARTDLKKNRSYPNASKDENKQLLVGAAIG 256
Query: 327 TREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPR 386
TR ADK RL+ L+ AGVDV++LDSSQGNS YQI+MIK+IK EYP++QVI GNV+ Q +
Sbjct: 257 TRNADKQRLQHLTTAGVDVIVLDSSQGNSKYQIDMIKYIKSEYPELQVIAGNVVTTMQAK 316
Query: 387 ------ATLLNFIYQIEMIKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGV 439
A L I + ++ +GR TAVY+VAEYA + GVPVIADGG+
Sbjct: 317 NLIEAGADALRVGMGCGSICITQ----EVMAVGRPQATAVYKVAEYARKFGVPVIADGGI 372
Query: 440 QSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGA 499
QS+GH++K+L+LGAST MMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAM+RKD
Sbjct: 373 QSIGHIIKSLSLGASTVMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMNRKDAHG 432
Query: 500 AAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRAMM 559
+AMDRYFHNEMDKLKVAQGVSG+IVDKG+VL+FLPYL CG+KHGCQDIGAKS+S LR+MM
Sbjct: 433 SAMDRYFHNEMDKLKVAQGVSGSIVDKGTVLKFLPYLLCGIKHGCQDIGAKSISTLRSMM 492
Query: 560 YSGELKFEKRTLCAQNEGSVHGLYSYEKRLF 590
YSGELKFE+RT AQ EG+VH L+SYEK+ F
Sbjct: 493 YSGELKFERRTHSAQQEGNVHSLFSYEKKTF 523
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|193716221|ref|XP_001951660.1| PREDICTED: inosine-5'-monophosphate dehydrogenase-like isoform 1 [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 588 bits (1517), Expect = e-165, Method: Compositional matrix adjust.
Identities = 307/504 (60%), Positives = 372/504 (73%), Gaps = 37/504 (7%)
Query: 90 DLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAG 149
DLSSPLTK ITL APLVSSPMDTVTES+MA AMALCGGIG
Sbjct: 42 DLSSPLTKNITLQAPLVSSPMDTVTESEMATAMALCGGIGI------------------- 82
Query: 150 VDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGLRVGSHG 209
+ L + Q + + +++ KY D VI +++ +D R+
Sbjct: 83 IHHNCLPAYQASEVLKVK--KYKHGFIRDPVVISQDLLVSDV-----------FRLKEE- 128
Query: 210 CHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISL 269
HGFCGFPVTENGKLG KL+GIVTSRD+DFLE S + + VMT + IISA++G++L
Sbjct: 129 -HGFCGFPVTENGKLGGKLVGIVTSRDIDFLEGSEQLQQSVNLVMTRIENIISAKSGVTL 187
Query: 270 EEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTRE 329
E+AN +LE SKKGKLPILN+ GEL+ALIARTDLKKSR+YP +SKDEN QL+VGAAIGTRE
Sbjct: 188 EQANSLLENSKKGKLPILNENGELVALIARTDLKKSRNYPKASKDENKQLLVGAAIGTRE 247
Query: 330 ADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATL 389
DK+RL LL QAG DV++LDSSQGNS+YQI+MIK+IKK P +QVI GNV+ Q +A +
Sbjct: 248 DDKDRLHLLHQAGADVIVLDSSQGNSVYQIDMIKYIKKNLPSLQVIAGNVVTMAQAKALI 307
Query: 390 LNFI--YQIEMIKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVM 446
++ M ++ +GR GTAVYRVA+YAS+ GVPVI DGG+QS+GH++
Sbjct: 308 DAGADGLRVGMGCGSICTTQEVMAVGRAQGTAVYRVAQYASQFGVPVIGDGGIQSIGHII 367
Query: 447 KALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYF 506
K+LALGAST MMGS+LAGTSE+PGEYFFSDGVRLKKYRGMGSLEAM+RKD +A++RYF
Sbjct: 368 KSLALGASTVMMGSMLAGTSESPGEYFFSDGVRLKKYRGMGSLEAMNRKDAKGSALNRYF 427
Query: 507 HNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRAMMYSGELKF 566
H+E D LKVAQGVSG IVDKGS LRFLPY+QCGL+H CQDIG KSL NLRAMM SG+L+F
Sbjct: 428 HSEKDSLKVAQGVSGTIVDKGSALRFLPYIQCGLRHSCQDIGTKSLKNLRAMMLSGQLRF 487
Query: 567 EKRTLCAQNEGSVHGLYSYEKRLF 590
E+RT AQ EG+VH L+SYEKRLF
Sbjct: 488 ERRTHSAQLEGNVHSLFSYEKRLF 511
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307207027|gb|EFN84850.1| Inosine-5'-monophosphate dehydrogenase [Harpegnathos saltator] | Back alignment and taxonomy information |
|---|
Score = 586 bits (1510), Expect = e-164, Method: Compositional matrix adjust.
Identities = 320/550 (58%), Positives = 393/550 (71%), Gaps = 54/550 (9%)
Query: 54 PVTENGKLGEKLL----GIVTSRDVDFLENSANMDLKIEK-DLSSPLTKKITLAAPLVSS 108
P+ ++G E+L G+ + DF+ +D E+ DL SPLTKKI L APLVSS
Sbjct: 15 PLPDDGTSAERLFASGDGLTYN---DFIILPGYIDFTAEEVDLLSPLTKKIMLKAPLVSS 71
Query: 109 PMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEM 168
PMDTVTESDMAIAMAL GGIG I +Y Q N +++++
Sbjct: 72 PMDTVTESDMAIAMALSGGIG-IIHHNCTPEY------------------QANEVHKVK- 111
Query: 169 IKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKL 228
KY D V+ + + D L V + HGF G PVT+ GK+G KL
Sbjct: 112 -KYKHGFIRDPVVLAPHHMVNDV-----------LNVKAE--HGFSGVPVTDTGKVGGKL 157
Query: 229 LGIVTSRDVDFLENSANMDLK-IEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPIL 287
LGIVTSRD+DFLE N K + +MT + +I+A AG++L+EAN ILEKSKKGKLPI+
Sbjct: 158 LGIVTSRDIDFLECLQNYQHKSLSSIMTTLENLITAPAGVTLQEANAILEKSKKGKLPIV 217
Query: 288 NDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVVI 347
N++GEL++L+ARTDLKK+R+YP++SKDEN QL+VGAAIGTR ADK RL LL AGVDV++
Sbjct: 218 NERGELVSLMARTDLKKNRNYPNASKDENKQLLVGAAIGTRSADKQRLHLLEAAGVDVIV 277
Query: 348 LDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFI------YQIEMIKF 401
LDSSQGNS+YQIEMI++IK +YPD+QVI GNV+ Q + N I ++ M
Sbjct: 278 LDSSQGNSMYQIEMIRYIKSQYPDLQVIAGNVVTTMQAK----NLIEAGADALRVGMGSG 333
Query: 402 IKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGS 460
++ +GR TAVY+V+EYA + G+PVIADGG+QSVGH++KAL+LGAST MMGS
Sbjct: 334 SICITQEVMAVGRPQATAVYKVSEYARKFGIPVIADGGIQSVGHIIKALSLGASTVMMGS 393
Query: 461 LLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVS 520
LLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAM+RKD +AMDRYFHNEMDKLKVAQGVS
Sbjct: 394 LLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMNRKDAKGSAMDRYFHNEMDKLKVAQGVS 453
Query: 521 GAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRAMMYSGELKFEKRTLCAQNEGSVH 580
G+IVDKGSVL+FLPYL CG+KH CQDIGA+SLS LR+MMYSGELKFE+RT AQ EG+VH
Sbjct: 454 GSIVDKGSVLKFLPYLTCGIKHSCQDIGARSLSILRSMMYSGELKFERRTHSAQQEGNVH 513
Query: 581 GLYSYEKRLF 590
L+SYEKRLF
Sbjct: 514 SLFSYEKRLF 523
|
Source: Harpegnathos saltator Species: Harpegnathos saltator Genus: Harpegnathos Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307184254|gb|EFN70727.1| Inosine-5'-monophosphate dehydrogenase [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 582 bits (1501), Expect = e-163, Method: Compositional matrix adjust.
Identities = 316/548 (57%), Positives = 389/548 (70%), Gaps = 48/548 (8%)
Query: 53 FPVTENGKLGEKLLGIVTSRDV-DFLENSANMDLKIEK-DLSSPLTKKITLAAPLVSSPM 110
P+ ++G E+LLG DF+ +D E+ DL SPLTKKI L APLVSSPM
Sbjct: 14 MPLPDDGLSAEQLLGAGDGLTYNDFIILPGYIDFAAEEVDLLSPLTKKIMLKAPLVSSPM 73
Query: 111 DTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIK 170
DTVTESDMAIAMAL GGIG A+ Q N +++++ K
Sbjct: 74 DTVTESDMAIAMALSGGIGIIHHNCTAE-------------------YQANEVHKVK--K 112
Query: 171 YIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLG 230
Y D V+ + D L V + HGF G PVT+ GK+G KLLG
Sbjct: 113 YKHGFIRDPVVLAPHHTVNDV-----------LNVKAE--HGFSGVPVTDTGKVGGKLLG 159
Query: 231 IVTSRDVDFLENSANMDLK-IEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILND 289
IVTSRD+DFLE N K + +MT ++I+A AG++L+EAN ILEKSKKGKLPI+N+
Sbjct: 160 IVTSRDIDFLERLPNYQFKTLNSIMTTAEDLITAPAGVTLQEANCILEKSKKGKLPIVNE 219
Query: 290 KGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVVILD 349
+GEL++L+ARTDLKK+R YP++SKDEN QL+VGAAIGTRE DK+RL+LL AGVDVV+LD
Sbjct: 220 RGELVSLMARTDLKKNRSYPNASKDENKQLLVGAAIGTRETDKHRLELLVAAGVDVVVLD 279
Query: 350 SSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFI------YQIEMIKFIK 403
SSQGNS+YQI MIK+IK +YP++QVI GNV+ Q + N I ++ M
Sbjct: 280 SSQGNSMYQINMIKYIKSQYPNLQVIAGNVVTTIQAK----NLIEAGADALRVGMGSGSI 335
Query: 404 KEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLL 462
++ +GR TAVY+V+EYA + G+PVIADGG+QS+GH++K L+LGAST MMGSLL
Sbjct: 336 CITQEVMAVGRPQATAVYKVSEYARKFGIPVIADGGIQSIGHIIKGLSLGASTVMMGSLL 395
Query: 463 AGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGA 522
AGTSEAPGEYFFSDGVRLKKYRGMGSL+AM+RKD +AMDRYFHNEMDKLKVAQGVSG+
Sbjct: 396 AGTSEAPGEYFFSDGVRLKKYRGMGSLDAMNRKDAKGSAMDRYFHNEMDKLKVAQGVSGS 455
Query: 523 IVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRAMMYSGELKFEKRTLCAQNEGSVHGL 582
IVDKGSVL+F PYL CG+KHGCQDIGA+SL+ LR+MMYSGELKFE+RT AQ EG+VH L
Sbjct: 456 IVDKGSVLKFSPYLTCGIKHGCQDIGARSLTALRSMMYSGELKFERRTHSAQQEGNVHSL 515
Query: 583 YSYEKRLF 590
+SYEKRLF
Sbjct: 516 FSYEKRLF 523
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350419125|ref|XP_003492078.1| PREDICTED: inosine-5'-monophosphate dehydrogenase-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 577 bits (1487), Expect = e-162, Method: Compositional matrix adjust.
Identities = 307/525 (58%), Positives = 379/525 (72%), Gaps = 54/525 (10%)
Query: 74 VDFLENSANMDLKIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIG 133
+DF N E DL SPLTKKI + APLVSSPMDTVTESDMAIAMALCGGIG I
Sbjct: 94 IDFTAN--------EVDLLSPLTKKIMIKAPLVSSPMDTVTESDMAIAMALCGGIG-IIH 144
Query: 134 TREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAK 193
+Y Q N +Y+++ KY D V+ N D
Sbjct: 145 HNCTPEY------------------QANEVYKVK--KYKHGFIRDPVVLSPNHTVKDV-- 182
Query: 194 NLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMD-LKIEK 252
L V + +GF G P+T GK+G KLLGIVTSRD+DFL+N+ + +K+
Sbjct: 183 ---------LNVKAK--YGFSGVPITNTGKVGGKLLGIVTSRDIDFLKNTTDQQCIKLGS 231
Query: 253 VMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSS 312
+MT + +I+A AG++L+EANVILEKS+KGKLPI+N++GEL++L+ARTDLKK+R YP++S
Sbjct: 232 IMTKLENLITATAGVTLQEANVILEKSRKGKLPIVNEEGELVSLMARTDLKKNRSYPNAS 291
Query: 313 KDENNQLIVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDM 372
KDEN QL+VGAAIGT ADK RL+ L+ AGVDV++LDSSQGNS YQI+MIK+IK EYP++
Sbjct: 292 KDENKQLLVGAAIGTHNADKQRLQHLTTAGVDVIVLDSSQGNSKYQIDMIKYIKSEYPEL 351
Query: 373 QVIGGNVLFGYQPR------ATLLNFIYQIEMIKFIKKEYPDMQVIGR-NGTAVYRVAEY 425
QVI GNV+ Q + A L I + ++ +GR TAVY+VAEY
Sbjct: 352 QVIAGNVVTTLQAKNLIEAGADALRVGMGCGSICITQ----EVMAVGRPQATAVYKVAEY 407
Query: 426 ASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRG 485
A + GVP+IADGG+QS+GH++K+L+LGAST MMGSLLAGTSEAPGEYFFSDGVRLKKYRG
Sbjct: 408 ARKFGVPIIADGGIQSIGHIIKSLSLGASTVMMGSLLAGTSEAPGEYFFSDGVRLKKYRG 467
Query: 486 MGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCGLKHGCQ 545
MGSLEAM+RKD + MDRYFHNE DKLK+AQGVSG+IVD+G+VL+FLPYL CG+KHGCQ
Sbjct: 468 MGSLEAMNRKDAQGSVMDRYFHNEADKLKIAQGVSGSIVDRGTVLKFLPYLICGIKHGCQ 527
Query: 546 DIGAKSLSNLRAMMYSGELKFEKRTLCAQNEGSVHGLYSYEKRLF 590
DIGAKS+S LR+MMYSGELKFE+RT AQ EG+VH L+SYEKRLF
Sbjct: 528 DIGAKSISTLRSMMYSGELKFERRTHSAQQEGNVHSLFSYEKRLF 572
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|91093403|ref|XP_966518.1| PREDICTED: similar to inosine-5-monophosphate dehydrogenase isoform 1 [Tribolium castaneum] gi|270015409|gb|EFA11857.1| hypothetical protein TcasGA2_TC005099 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 556 bits (1432), Expect = e-155, Method: Compositional matrix adjust.
Identities = 291/508 (57%), Positives = 365/508 (71%), Gaps = 45/508 (8%)
Query: 90 DLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAG 149
DL++ LTKKITL +PLVSSPMDTVTES MAIAMALCGGIG I + Y
Sbjct: 44 DLTTQLTKKITLKSPLVSSPMDTVTESSMAIAMALCGGIG-VIHHNCSPSY--------- 93
Query: 150 VDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGLRVGSHG 209
Q N + +++ K+ P + V + K
Sbjct: 94 ---------QANEVLKVKKYKHGFIHNPVVLCPTNTVADVLKTKKE-------------- 130
Query: 210 CHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISL 269
GF G P+TE+GK+G KL+GIVTSRD+DFLE+ + K+E +MT + ++++AQ+G++L
Sbjct: 131 -QGFSGIPITEDGKMGGKLVGIVTSRDLDFLEDQNYSNSKLETIMTKLEDLVTAQSGVTL 189
Query: 270 EEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTRE 329
EAN IL KSKKGKLPI+N +G L+AL+ARTDLKK++ YP +SKD+N QLIVGAAIGTR+
Sbjct: 190 PEANSILAKSKKGKLPIVNAEGNLVALMARTDLKKAKSYPTASKDDNKQLIVGAAIGTRD 249
Query: 330 ADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPR--- 386
DK RLKLL AGVDV++LDSSQGNS+YQIEMIK+IKK YP +QVI GNV+ Q +
Sbjct: 250 EDKERLKLLVNAGVDVIVLDSSQGNSVYQIEMIKYIKKSYPSLQVIAGNVVTAKQAKNLI 309
Query: 387 ---ATLLNFIYQIEMIKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSV 442
A L I + ++ +GR TAVYRVA+YA R GVPVIADGG+QS+
Sbjct: 310 DAGADALRCGMGSGSICITQ----EVMAVGRAQATAVYRVAQYAKRYGVPVIADGGIQSI 365
Query: 443 GHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAM 502
GH++KALALGAS+ MMGS+LAGTSEAPGEY+FSDGVRLKKYRGMGS+EAM+RKD +AM
Sbjct: 366 GHIIKALALGASSVMMGSMLAGTSEAPGEYYFSDGVRLKKYRGMGSIEAMNRKDAMGSAM 425
Query: 503 DRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRAMMYSG 562
+RYFH++ DKLKVAQGVSG+IVDKGSV RF+PYLQCG++HGCQDIG KSL+ L+ ++ G
Sbjct: 426 NRYFHSDADKLKVAQGVSGSIVDKGSVFRFVPYLQCGIRHGCQDIGVKSLTKLKELIDCG 485
Query: 563 ELKFEKRTLCAQNEGSVHGLYSYEKRLF 590
E++FEKRT AQ EG+VHGL+SYEKRLF
Sbjct: 486 EVRFEKRTHSAQLEGNVHGLFSYEKRLF 513
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 590 | ||||||
| FB|FBgn0003204 | 537 | ras "raspberry" [Drosophila me | 0.637 | 0.700 | 0.647 | 7.9e-157 | |
| UNIPROTKB|P12268 | 514 | IMPDH2 "Inosine-5'-monophospha | 0.635 | 0.729 | 0.618 | 2.5e-147 | |
| UNIPROTKB|Q3SWY3 | 514 | IMPDH2 "Inosine-5'-monophospha | 0.635 | 0.729 | 0.618 | 3.7e-146 | |
| UNIPROTKB|A0JNA3 | 514 | IMPDH1 "Inosine-5'-monophospha | 0.635 | 0.729 | 0.629 | 1.1e-137 | |
| UNIPROTKB|F1SML7 | 572 | IMPDH1 "Inosine-5'-monophospha | 0.635 | 0.655 | 0.629 | 2.8e-137 | |
| UNIPROTKB|I3LRI0 | 528 | IMPDH1 "Inosine-5'-monophospha | 0.635 | 0.710 | 0.629 | 2.8e-137 | |
| UNIPROTKB|E2RID1 | 530 | IMPDH1 "Inosine-5'-monophospha | 0.635 | 0.707 | 0.629 | 2.8e-137 | |
| ZFIN|ZDB-GENE-030219-206 | 539 | impdh1b "inosine 5'-phosphate | 0.635 | 0.695 | 0.626 | 5.8e-137 | |
| UNIPROTKB|A4D0Z6 | 599 | IMPDH1 "Inosine-5'-monophospha | 0.635 | 0.626 | 0.626 | 1.5e-136 | |
| UNIPROTKB|J3KNX8 | 589 | IMPDH1 "Inosine-5'-monophospha | 0.635 | 0.636 | 0.626 | 1.5e-136 |
| FB|FBgn0003204 ras "raspberry" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1238 (440.9 bits), Expect = 7.9e-157, Sum P(2) = 7.9e-157
Identities = 248/383 (64%), Positives = 304/383 (79%)
Query: 211 HGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLE 270
+GF G+PVTENGKLG KLLG+VTSRD+DF EN ++ + +MT E+++A GI+L
Sbjct: 159 NGFTGYPVTENGKLGGKLLGMVTSRDIDFRENQP--EVLLADIMTT--ELVTAPNGINLP 214
Query: 271 EANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREA 330
AN ILEKSKKGKLPI+N GEL+A+IARTDLKK+R YP++SKD N QL+VGAAIGTR
Sbjct: 215 TANAILEKSKKGKLPIVNQAGELVAMIARTDLKKARSYPNASKDSNKQLLVGAAIGTRSE 274
Query: 331 DKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLL 390
DK RL LL GVDV+ILDSSQGNS+YQ+EMIK+IK+ YP++QVIGGNV+ Q + +
Sbjct: 275 DKARLALLVANGVDVIILDSSQGNSVYQVEMIKYIKETYPELQVIGGNVVTRAQAKNLID 334
Query: 391 NFI--YQIEMIKFIKKEYPDMQVIG-RNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMK 447
+ ++ M ++ G TAVY+V+ YA + GVPVIADGG+QS+GH++K
Sbjct: 335 AGVDGLRVGMGSGSICITQEVMACGCPQATAVYQVSTYARQFGVPVIADGGIQSIGHIVK 394
Query: 448 ALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFH 507
A+ALGAS MMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAM R D AAM RY+H
Sbjct: 395 AIALGASAVMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMERGDAKGAAMSRYYH 454
Query: 508 NEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRAMMYSGELKFE 567
NEMDK+KVAQGVSG+IVDKGSVLR+LPYL+CGL+H CQDIGA S++ LR M+Y+G+L+F
Sbjct: 455 NEMDKMKVAQGVSGSIVDKGSVLRYLPYLECGLQHSCQDIGANSINKLRDMIYNGQLRFM 514
Query: 568 KRTLCAQNEGSVHGLYSYEKRLF 590
KRT AQ EG+VHGL+SYEKRLF
Sbjct: 515 KRTHSAQLEGNVHGLFSYEKRLF 537
|
|
| UNIPROTKB|P12268 IMPDH2 "Inosine-5'-monophosphate dehydrogenase 2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1184 (421.8 bits), Expect = 2.5e-147, Sum P(2) = 2.5e-147
Identities = 237/383 (61%), Positives = 302/383 (78%)
Query: 211 HGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLE 270
HGFCG P+T+ G++G +L+GI++SRD+DFL+ + D +E++MT +++ A AGI+L+
Sbjct: 137 HGFCGIPITDTGRMGSRLVGIISSRDIDFLKEEEH-DCFLEEIMTKREDLVVAPAGITLK 195
Query: 271 EANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREA 330
EAN IL++SKKGKLPI+N+ EL+A+IARTDLKK+RDYP +SKD QL+ GAAIGT E
Sbjct: 196 EANEILQRSKKGKLPIVNEDDELVAIIARTDLKKNRDYPLASKDAKKQLLCGAAIGTHED 255
Query: 331 DKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLL 390
DK RL LL+QAGVDVV+LDSSQGNSI+QI MIK+IK +YP++QVIGGNV+ Q + +
Sbjct: 256 DKYRLDLLAQAGVDVVVLDSSQGNSIFQINMIKYIKDKYPNLQVIGGNVVTAAQAKNLID 315
Query: 391 NFIYQIEMIKFIKKEYPDMQVI--GR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMK 447
+ + + +V+ GR TAVY+V+EYA R GVPVIADGG+Q+VGH+ K
Sbjct: 316 AGVDALRVGMGSGSICITQEVLACGRPQATAVYKVSEYARRFGVPVIADGGIQNVGHIAK 375
Query: 448 ALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFH 507
ALALGAST MMGSLLA T+EAPGEYFFSDG+RLKKYRGMGSL+AM D ++ +RYF
Sbjct: 376 ALALGASTVMMGSLLAATTEAPGEYFFSDGIRLKKYRGMGSLDAM---DKHLSSQNRYF- 431
Query: 508 NEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRAMMYSGELKFE 567
+E DK+KVAQGVSGA+ DKGS+ +F+PYL G++H CQDIGAKSL+ +RAMMYSGELKFE
Sbjct: 432 SEADKIKVAQGVSGAVQDKGSIHKFVPYLIAGIQHSCQDIGAKSLTQVRAMMYSGELKFE 491
Query: 568 KRTLCAQNEGSVHGLYSYEKRLF 590
KRT AQ EG VH L+SYEKRLF
Sbjct: 492 KRTSSAQVEGGVHSLHSYEKRLF 514
|
|
| UNIPROTKB|Q3SWY3 IMPDH2 "Inosine-5'-monophosphate dehydrogenase 2" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1178 (419.7 bits), Expect = 3.7e-146, Sum P(2) = 3.7e-146
Identities = 237/383 (61%), Positives = 300/383 (78%)
Query: 211 HGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLE 270
HGFCG P+T+ G++G L+GI++SRD+DFL+ + D + ++MT +++ A AGI+L+
Sbjct: 137 HGFCGIPITDTGRMGSHLVGIISSRDIDFLKEEEH-DRLLGEIMTKREDLVVAPAGITLK 195
Query: 271 EANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREA 330
EAN IL++SKKGKLPI+N+ EL+A+IARTDLKK+RDYP +SKD QL+ GAAIGT E
Sbjct: 196 EANEILQRSKKGKLPIVNENDELVAIIARTDLKKNRDYPLASKDAKKQLLCGAAIGTHED 255
Query: 331 DKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLL 390
DK RL LLSQAGVDVV+LDSSQGNSI+QI MIK+IK++YP +QVIGGNV+ Q + +
Sbjct: 256 DKYRLDLLSQAGVDVVVLDSSQGNSIFQINMIKYIKEKYPSIQVIGGNVVTAAQAKNLID 315
Query: 391 NFIYQIEMIKFIKKEYPDMQVI--GR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMK 447
+ + + +V+ GR TAVY+V+EYA R GVPVIADGG+Q+VGH+ K
Sbjct: 316 AGVDALRVGMGSGSICITQEVLACGRPQATAVYKVSEYARRFGVPVIADGGIQNVGHIAK 375
Query: 448 ALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFH 507
ALALGAST MMGSLLA T+EAPGEYFFSDG+RLKKYRGMGSL+AM D ++ +RYF
Sbjct: 376 ALALGASTVMMGSLLAATTEAPGEYFFSDGIRLKKYRGMGSLDAM---DKHLSSQNRYF- 431
Query: 508 NEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRAMMYSGELKFE 567
+E DK+KVAQGVSGA+ DKGS+ +F+PYL G++H CQDIGAKSL+ +RAMMYSGELKFE
Sbjct: 432 SEADKIKVAQGVSGAVQDKGSIHKFVPYLIAGIQHSCQDIGAKSLTQVRAMMYSGELKFE 491
Query: 568 KRTLCAQNEGSVHGLYSYEKRLF 590
KRT AQ EG VH L+SYEKRLF
Sbjct: 492 KRTSSAQVEGGVHSLHSYEKRLF 514
|
|
| UNIPROTKB|A0JNA3 IMPDH1 "Inosine-5'-monophosphate dehydrogenase 1" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1201 (427.8 bits), Expect = 1.1e-137, Sum P(2) = 1.1e-137
Identities = 241/383 (62%), Positives = 305/383 (79%)
Query: 211 HGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLE 270
HGF G P+TE G +G KL+GIVTSRD+DFL + L + +VMT NE++ A AG++L+
Sbjct: 137 HGFSGIPITETGTMGSKLVGIVTSRDIDFLAEKDHTTL-LSEVMTPRNELVVAPAGVTLK 195
Query: 271 EANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREA 330
EAN IL++SKKGKLPI+ND+ EL+A+IARTDLKK+RDYP +SKD + QL+ GAA+GTRE
Sbjct: 196 EANEILQRSKKGKLPIVNDRDELVAIIARTDLKKNRDYPLASKDSHKQLLCGAAVGTRED 255
Query: 331 DKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLL 390
DK RL LL+QAG DV++LDSSQGNS+YQI M+ +IK++YP +QVIGGNV+ Q + +
Sbjct: 256 DKYRLDLLTQAGADVIVLDSSQGNSVYQIAMVHYIKQKYPHLQVIGGNVVTAAQAKNLID 315
Query: 391 NFIYQIEMIKFIKKEYPDMQVI--GR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMK 447
+ + + +V+ GR GTAVY+VAEYA R GVPVIADGG+Q+VGHV+K
Sbjct: 316 AGVDGLRVGMGCGSICITQEVMACGRPQGTAVYKVAEYARRFGVPVIADGGIQTVGHVVK 375
Query: 448 ALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFH 507
ALALGAST MMGSLLA T+EAPGEYFFSDGVRLKKYRGMGSL+AM + +++ RYF
Sbjct: 376 ALALGASTVMMGSLLAATTEAPGEYFFSDGVRLKKYRGMGSLDAMEKS---SSSQKRYF- 431
Query: 508 NEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRAMMYSGELKFE 567
+E DK+K+AQGVSG+I DKGS+ +F+PYL G++HGCQDIGA+SLS LR+MMYSGELKFE
Sbjct: 432 SEGDKVKIAQGVSGSIQDKGSIQKFVPYLIAGIQHGCQDIGARSLSVLRSMMYSGELKFE 491
Query: 568 KRTLCAQNEGSVHGLYSYEKRLF 590
KRT+ AQ EG VHGL+SYEKRL+
Sbjct: 492 KRTMSAQIEGGVHGLHSYEKRLY 514
|
|
| UNIPROTKB|F1SML7 IMPDH1 "Inosine-5'-monophosphate dehydrogenase" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1201 (427.8 bits), Expect = 2.8e-137, Sum P(2) = 2.8e-137
Identities = 241/383 (62%), Positives = 305/383 (79%)
Query: 211 HGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLE 270
HGF G P+TE G +G KL+GIVTSRD+DFL + L + +VMT NE++ A AG++L+
Sbjct: 195 HGFSGIPITETGTMGSKLVGIVTSRDIDFLAEKDHTTL-LSEVMTPRNELVVAPAGVTLK 253
Query: 271 EANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREA 330
EAN IL++SKKGKLPI+ND+ EL+A+IARTDLKK+RDYP +SKD + QL+ GAA+GTRE
Sbjct: 254 EANEILQRSKKGKLPIVNDRDELVAIIARTDLKKNRDYPLASKDSHKQLLCGAAVGTRED 313
Query: 331 DKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLL 390
DK RL LL+QAG DV++LDSSQGNS+YQI M+ +IK++YP +QVIGGNV+ Q + +
Sbjct: 314 DKYRLDLLTQAGADVIVLDSSQGNSVYQIAMVHYIKQKYPHLQVIGGNVVTAAQAKNLID 373
Query: 391 NFIYQIEMIKFIKKEYPDMQVI--GR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMK 447
+ + + +V+ GR GTAVY+VAEYA R GVPVIADGG+Q+VGHV+K
Sbjct: 374 AGVDGLRVGMGCGSICITQEVMACGRPQGTAVYKVAEYARRFGVPVIADGGIQTVGHVVK 433
Query: 448 ALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFH 507
ALALGAST MMGSLLA T+EAPGEYFFSDGVRLKKYRGMGSL+AM + +++ RYF
Sbjct: 434 ALALGASTVMMGSLLAATTEAPGEYFFSDGVRLKKYRGMGSLDAMEKS---SSSQKRYF- 489
Query: 508 NEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRAMMYSGELKFE 567
+E DK+K+AQGVSG+I DKGS+ +F+PYL G++HGCQDIGA+SLS LR+MMYSGELKFE
Sbjct: 490 SEGDKVKIAQGVSGSIQDKGSIQKFVPYLIAGIQHGCQDIGARSLSVLRSMMYSGELKFE 549
Query: 568 KRTLCAQNEGSVHGLYSYEKRLF 590
KRT+ AQ EG VHGL+SYEKRL+
Sbjct: 550 KRTMSAQIEGGVHGLHSYEKRLY 572
|
|
| UNIPROTKB|I3LRI0 IMPDH1 "Inosine-5'-monophosphate dehydrogenase" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1201 (427.8 bits), Expect = 2.8e-137, Sum P(2) = 2.8e-137
Identities = 241/383 (62%), Positives = 305/383 (79%)
Query: 211 HGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLE 270
HGF G P+TE G +G KL+GIVTSRD+DFL + L + +VMT NE++ A AG++L+
Sbjct: 151 HGFSGIPITETGTMGSKLVGIVTSRDIDFLAEKDHTTL-LSEVMTPRNELVVAPAGVTLK 209
Query: 271 EANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREA 330
EAN IL++SKKGKLPI+ND+ EL+A+IARTDLKK+RDYP +SKD + QL+ GAA+GTRE
Sbjct: 210 EANEILQRSKKGKLPIVNDRDELVAIIARTDLKKNRDYPLASKDSHKQLLCGAAVGTRED 269
Query: 331 DKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLL 390
DK RL LL+QAG DV++LDSSQGNS+YQI M+ +IK++YP +QVIGGNV+ Q + +
Sbjct: 270 DKYRLDLLTQAGADVIVLDSSQGNSVYQIAMVHYIKQKYPHLQVIGGNVVTAAQAKNLID 329
Query: 391 NFIYQIEMIKFIKKEYPDMQVI--GR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMK 447
+ + + +V+ GR GTAVY+VAEYA R GVPVIADGG+Q+VGHV+K
Sbjct: 330 AGVDGLRVGMGCGSICITQEVMACGRPQGTAVYKVAEYARRFGVPVIADGGIQTVGHVVK 389
Query: 448 ALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFH 507
ALALGAST MMGSLLA T+EAPGEYFFSDGVRLKKYRGMGSL+AM + +++ RYF
Sbjct: 390 ALALGASTVMMGSLLAATTEAPGEYFFSDGVRLKKYRGMGSLDAMEKS---SSSQKRYF- 445
Query: 508 NEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRAMMYSGELKFE 567
+E DK+K+AQGVSG+I DKGS+ +F+PYL G++HGCQDIGA+SLS LR+MMYSGELKFE
Sbjct: 446 SEGDKVKIAQGVSGSIQDKGSIQKFVPYLIAGIQHGCQDIGARSLSVLRSMMYSGELKFE 505
Query: 568 KRTLCAQNEGSVHGLYSYEKRLF 590
KRT+ AQ EG VHGL+SYEKRL+
Sbjct: 506 KRTMSAQIEGGVHGLHSYEKRLY 528
|
|
| UNIPROTKB|E2RID1 IMPDH1 "Inosine-5'-monophosphate dehydrogenase" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1201 (427.8 bits), Expect = 2.8e-137, Sum P(2) = 2.8e-137
Identities = 241/383 (62%), Positives = 305/383 (79%)
Query: 211 HGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLE 270
HGF G P+TE G +G KL+GIVTSRD+DFL + L + +VMT NE++ A AG++L+
Sbjct: 153 HGFSGIPITETGTMGSKLVGIVTSRDIDFLAEKDHTTL-LSEVMTPRNELVVAPAGVTLK 211
Query: 271 EANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREA 330
EAN IL++SKKGKLPI+ND+ EL+A+IARTDLKK+RDYP +SKD + QL+ GAA+GTRE
Sbjct: 212 EANEILQRSKKGKLPIVNDRDELVAIIARTDLKKNRDYPLASKDSHKQLLCGAAVGTRED 271
Query: 331 DKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLL 390
DK RL LL+QAG DV++LDSSQGNS+YQI M+ +IK++YP +QVIGGNV+ Q + +
Sbjct: 272 DKYRLDLLTQAGADVIVLDSSQGNSVYQIAMVHYIKQKYPHLQVIGGNVVTAAQAKNLID 331
Query: 391 NFIYQIEMIKFIKKEYPDMQVI--GR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMK 447
+ + + +V+ GR GTAVY+VAEYA R GVPVIADGG+Q+VGHV+K
Sbjct: 332 AGVDGLRVGMGCGSICITQEVMACGRPQGTAVYKVAEYARRFGVPVIADGGIQTVGHVVK 391
Query: 448 ALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFH 507
ALALGAST MMGSLLA T+EAPGEYFFSDGVRLKKYRGMGSL+AM + +++ RYF
Sbjct: 392 ALALGASTVMMGSLLAATTEAPGEYFFSDGVRLKKYRGMGSLDAMEKS---SSSQKRYF- 447
Query: 508 NEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRAMMYSGELKFE 567
+E DK+K+AQGVSG+I DKGS+ +F+PYL G++HGCQDIGA+SLS LR+MMYSGELKFE
Sbjct: 448 SEGDKVKIAQGVSGSIQDKGSIQKFVPYLIAGIQHGCQDIGARSLSVLRSMMYSGELKFE 507
Query: 568 KRTLCAQNEGSVHGLYSYEKRLF 590
KRT+ AQ EG VHGL+SYEKRL+
Sbjct: 508 KRTMSAQIEGGVHGLHSYEKRLY 530
|
|
| ZFIN|ZDB-GENE-030219-206 impdh1b "inosine 5'-phosphate dehydrogenase 1b" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1199 (427.1 bits), Expect = 5.8e-137, Sum P(2) = 5.8e-137
Identities = 240/383 (62%), Positives = 305/383 (79%)
Query: 211 HGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLE 270
HGF G P+TE GK+G KL+GIVTSRD+DFL N + +E+ MT +++ A AG++L+
Sbjct: 162 HGFSGIPITETGKMGSKLVGIVTSRDIDFLSEKDN-NKYLEEAMTKREDLVVAPAGVTLK 220
Query: 271 EANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREA 330
EAN IL++SKKGKLPI+NDK EL+A+IARTDLKK+RDYP +SKD QL+ GAAIGTRE
Sbjct: 221 EANDILQRSKKGKLPIVNDKDELVAIIARTDLKKNRDYPLASKDSRKQLLCGAAIGTRED 280
Query: 331 DKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLL 390
DK RL LL+Q+GVD+V+LDSSQGNS+YQI MI +IK++YP++QV+GGNV+ Q + +
Sbjct: 281 DKYRLDLLTQSGVDMVVLDSSQGNSVYQINMIHYIKQKYPELQVVGGNVVTAAQAKNLID 340
Query: 391 NFIYQIEMIKFIKKEYPDMQVI--GR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMK 447
+ + + +V+ GR GT+VY+VAEYA R GVPVIADGG+Q+VGHV+K
Sbjct: 341 AGVDALRVGMGCGSICITQEVMACGRPQGTSVYKVAEYARRFGVPVIADGGIQTVGHVVK 400
Query: 448 ALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFH 507
AL+LGAST MMGSLLA T+EAPGEYFFSDGVRLKKYRGMGSL+AM + ++ RYF
Sbjct: 401 ALSLGASTVMMGSLLAATTEAPGEYFFSDGVRLKKYRGMGSLDAMEKN---TSSQKRYF- 456
Query: 508 NEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRAMMYSGELKFE 567
+E DK+KVAQGVSG++ DKGS+ +F+PYL G++HGCQDIGAKSLS LR+MMYSGELKFE
Sbjct: 457 SEGDKVKVAQGVSGSVQDKGSIHKFVPYLIAGIQHGCQDIGAKSLSVLRSMMYSGELKFE 516
Query: 568 KRTLCAQNEGSVHGLYSYEKRLF 590
KRT+ AQ EG VHGL+S+EKRL+
Sbjct: 517 KRTMSAQVEGGVHGLHSFEKRLY 539
|
|
| UNIPROTKB|A4D0Z6 IMPDH1 "Inosine-5'-monophosphate dehydrogenase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1189 (423.6 bits), Expect = 1.5e-136, Sum P(2) = 1.5e-136
Identities = 240/383 (62%), Positives = 303/383 (79%)
Query: 211 HGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLE 270
HGF G P+TE G +G KL+GIVTSRD+DFL + L + +VMT E++ A AG++L+
Sbjct: 222 HGFSGIPITETGTMGSKLVGIVTSRDIDFLAEKDHTTL-LSEVMTPRIELVVAPAGVTLK 280
Query: 271 EANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREA 330
EAN IL++SKKGKLPI+ND EL+A+IARTDLKK+RDYP +SKD QL+ GAA+GTRE
Sbjct: 281 EANEILQRSKKGKLPIVNDCDELVAIIARTDLKKNRDYPLASKDSQKQLLCGAAVGTRED 340
Query: 331 DKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLL 390
DK RL LL+QAGVDV++LDSSQGNS+YQI M+ +IK++YP +QVIGGNV+ Q + +
Sbjct: 341 DKYRLDLLTQAGVDVIVLDSSQGNSVYQIAMVHYIKQKYPHLQVIGGNVVTAAQAKNLID 400
Query: 391 NFIYQIEMIKFIKKEYPDMQVI--GR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMK 447
+ + + +V+ GR GTAVY+VAEYA R GVP+IADGG+Q+VGHV+K
Sbjct: 401 AGVDGLRVGMGCGSICITQEVMACGRPQGTAVYKVAEYARRFGVPIIADGGIQTVGHVVK 460
Query: 448 ALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFH 507
ALALGAST MMGSLLA T+EAPGEYFFSDGVRLKKYRGMGSL+AM + +++ RYF
Sbjct: 461 ALALGASTVMMGSLLAATTEAPGEYFFSDGVRLKKYRGMGSLDAMEKS---SSSQKRYF- 516
Query: 508 NEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRAMMYSGELKFE 567
+E DK+K+AQGVSG+I DKGS+ +F+PYL G++HGCQDIGA+SLS LR+MMYSGELKFE
Sbjct: 517 SEGDKVKIAQGVSGSIQDKGSIQKFVPYLIAGIQHGCQDIGARSLSVLRSMMYSGELKFE 576
Query: 568 KRTLCAQNEGSVHGLYSYEKRLF 590
KRT+ AQ EG VHGL+SYEKRL+
Sbjct: 577 KRTMSAQIEGGVHGLHSYEKRLY 599
|
|
| UNIPROTKB|J3KNX8 IMPDH1 "Inosine-5'-monophosphate dehydrogenase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1189 (423.6 bits), Expect = 1.5e-136, Sum P(2) = 1.5e-136
Identities = 240/383 (62%), Positives = 303/383 (79%)
Query: 211 HGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLE 270
HGF G P+TE G +G KL+GIVTSRD+DFL + L + +VMT E++ A AG++L+
Sbjct: 212 HGFSGIPITETGTMGSKLVGIVTSRDIDFLAEKDHTTL-LSEVMTPRIELVVAPAGVTLK 270
Query: 271 EANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREA 330
EAN IL++SKKGKLPI+ND EL+A+IARTDLKK+RDYP +SKD QL+ GAA+GTRE
Sbjct: 271 EANEILQRSKKGKLPIVNDCDELVAIIARTDLKKNRDYPLASKDSQKQLLCGAAVGTRED 330
Query: 331 DKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLL 390
DK RL LL+QAGVDV++LDSSQGNS+YQI M+ +IK++YP +QVIGGNV+ Q + +
Sbjct: 331 DKYRLDLLTQAGVDVIVLDSSQGNSVYQIAMVHYIKQKYPHLQVIGGNVVTAAQAKNLID 390
Query: 391 NFIYQIEMIKFIKKEYPDMQVI--GR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMK 447
+ + + +V+ GR GTAVY+VAEYA R GVP+IADGG+Q+VGHV+K
Sbjct: 391 AGVDGLRVGMGCGSICITQEVMACGRPQGTAVYKVAEYARRFGVPIIADGGIQTVGHVVK 450
Query: 448 ALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFH 507
ALALGAST MMGSLLA T+EAPGEYFFSDGVRLKKYRGMGSL+AM + +++ RYF
Sbjct: 451 ALALGASTVMMGSLLAATTEAPGEYFFSDGVRLKKYRGMGSLDAMEKS---SSSQKRYF- 506
Query: 508 NEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRAMMYSGELKFE 567
+E DK+K+AQGVSG+I DKGS+ +F+PYL G++HGCQDIGA+SLS LR+MMYSGELKFE
Sbjct: 507 SEGDKVKIAQGVSGSIQDKGSIQKFVPYLIAGIQHGCQDIGARSLSVLRSMMYSGELKFE 566
Query: 568 KRTLCAQNEGSVHGLYSYEKRLF 590
KRT+ AQ EG VHGL+SYEKRL+
Sbjct: 567 KRTMSAQIEGGVHGLHSYEKRLY 589
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| P12269 | IMDH2_CRIGR | 1, ., 1, ., 1, ., 2, 0, 5 | 0.5384 | 0.8084 | 0.9280 | no | N/A |
| Q8F4Q4 | IMDH_LEPIN | 1, ., 1, ., 1, ., 2, 0, 5 | 0.4285 | 0.8084 | 0.9389 | yes | N/A |
| Q8CMQ7 | IMDH_STAES | 1, ., 1, ., 1, ., 2, 0, 5 | 0.3466 | 0.7067 | 0.8545 | yes | N/A |
| Q07152 | IMDH_DROME | 1, ., 1, ., 1, ., 2, 0, 5 | 0.5224 | 0.7474 | 0.8212 | yes | N/A |
| B0UXP9 | IMDH2_DANRE | 1, ., 1, ., 1, ., 2, 0, 5 | 0.5381 | 0.8016 | 0.9202 | no | N/A |
| E9PU28 | IMDH2_RAT | 1, ., 1, ., 1, ., 2, 0, 5 | 0.5388 | 0.7966 | 0.9143 | yes | N/A |
| P47996 | IMDH1_ARATH | 1, ., 1, ., 1, ., 2, 0, 5 | 0.3447 | 0.7627 | 0.8946 | yes | N/A |
| P99106 | IMDH_STAAN | 1, ., 1, ., 1, ., 2, 0, 5 | 0.3424 | 0.7067 | 0.8545 | yes | N/A |
| Q5KP44 | IMDH_CRYNJ | 1, ., 1, ., 1, ., 2, 0, 5 | 0.4719 | 0.7762 | 0.8419 | yes | N/A |
| Q4WHZ9 | IMDH_ASPFU | 1, ., 1, ., 1, ., 2, 0, 5 | 0.4555 | 0.7728 | 0.8351 | yes | N/A |
| F6S675 | IMDH1_XENTR | 1, ., 1, ., 1, ., 2, 0, 5 | 0.5593 | 0.7864 | 0.9062 | yes | N/A |
| Q2G0Y7 | IMDH_STAA8 | 1, ., 1, ., 1, ., 2, 0, 5 | 0.3424 | 0.7067 | 0.8545 | yes | N/A |
| P65167 | IMDH_MYCTU | 1, ., 1, ., 1, ., 2, 0, 5 | 0.3478 | 0.7915 | 0.8827 | yes | N/A |
| Q9GZH3 | IMDH_CAEEL | 1, ., 1, ., 1, ., 2, 0, 5 | 0.4120 | 0.8118 | 0.8970 | yes | N/A |
| Q9KGN8 | IMDH_BACHD | 1, ., 1, ., 1, ., 2, 0, 5 | 0.3382 | 0.7152 | 0.8701 | yes | N/A |
| Q6GJQ7 | IMDH_STAAR | 1, ., 1, ., 1, ., 2, 0, 5 | 0.3424 | 0.7067 | 0.8545 | yes | N/A |
| Q6GC82 | IMDH_STAAS | 1, ., 1, ., 1, ., 2, 0, 5 | 0.3424 | 0.7067 | 0.8545 | yes | N/A |
| Q5HRX2 | IMDH_STAEQ | 1, ., 1, ., 1, ., 2, 0, 5 | 0.3466 | 0.7067 | 0.8545 | yes | N/A |
| P65169 | IMDH_STAAM | 1, ., 1, ., 1, ., 2, 0, 5 | 0.3424 | 0.7067 | 0.8545 | yes | N/A |
| A0JNA3 | IMDH1_BOVIN | 1, ., 1, ., 1, ., 2, 0, 5 | 0.5464 | 0.7966 | 0.9143 | yes | N/A |
| Q6GMG5 | IMDH1_DANRE | 1, ., 1, ., 1, ., 2, 0, 5 | 0.5339 | 0.8186 | 0.8878 | no | N/A |
| Q54QQ0 | IMDH_DICDI | 1, ., 1, ., 1, ., 2, 0, 5 | 0.4900 | 0.7711 | 0.8834 | yes | N/A |
| P21879 | IMDH_BACSU | 1, ., 1, ., 1, ., 2, 0, 5 | 0.3474 | 0.7457 | 0.9016 | yes | N/A |
| P65168 | IMDH_MYCBO | 1, ., 1, ., 1, ., 2, 0, 5 | 0.3478 | 0.7915 | 0.8827 | yes | N/A |
| D3ZLZ7 | IMDH1_RAT | 1, ., 1, ., 1, ., 2, 0, 5 | 0.5426 | 0.7966 | 0.9143 | yes | N/A |
| Q2YVL6 | IMDH_STAAB | 1, ., 1, ., 1, ., 2, 0, 5 | 0.3424 | 0.7067 | 0.8545 | yes | N/A |
| P50094 | IMDH4_YEAST | 1, ., 1, ., 1, ., 2, 0, 5 | 0.4656 | 0.7728 | 0.8702 | yes | N/A |
| P50096 | IMDH1_MOUSE | 1, ., 1, ., 1, ., 2, 0, 5 | 0.5426 | 0.7966 | 0.9143 | yes | N/A |
| O67820 | IMDH_AQUAE | 1, ., 1, ., 1, ., 2, 0, 5 | 0.3380 | 0.7508 | 0.9040 | yes | N/A |
| Q5HIQ7 | IMDH_STAAC | 1, ., 1, ., 1, ., 2, 0, 5 | 0.3424 | 0.7067 | 0.8545 | yes | N/A |
| Q5RGV1 | IMDH3_DANRE | 1, ., 1, ., 1, ., 2, 0, 5 | 0.5464 | 0.7966 | 0.9143 | yes | N/A |
| O14344 | IMDH_SCHPO | 1, ., 1, ., 1, ., 2, 0, 5 | 0.3989 | 0.7355 | 0.8282 | yes | N/A |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 590 | |||
| PLN02274 | 505 | PLN02274, PLN02274, inosine-5'-monophosphate dehyd | 1e-180 | |
| PTZ00314 | 495 | PTZ00314, PTZ00314, inosine-5'-monophosphate dehyd | 1e-178 | |
| pfam00478 | 467 | pfam00478, IMPDH, IMP dehydrogenase / GMP reductas | 1e-150 | |
| TIGR01302 | 450 | TIGR01302, IMP_dehydrog, inosine-5'-monophosphate | 1e-144 | |
| PRK05567 | 486 | PRK05567, PRK05567, inosine 5'-monophosphate dehyd | 2e-94 | |
| cd00381 | 325 | cd00381, IMPDH, IMPDH: The catalytic domain of the | 2e-86 | |
| PLN02274 | 505 | PLN02274, PLN02274, inosine-5'-monophosphate dehyd | 2e-67 | |
| PTZ00314 | 495 | PTZ00314, PTZ00314, inosine-5'-monophosphate dehyd | 4e-66 | |
| pfam00478 | 467 | pfam00478, IMPDH, IMP dehydrogenase / GMP reductas | 1e-62 | |
| TIGR01302 | 450 | TIGR01302, IMP_dehydrog, inosine-5'-monophosphate | 8e-60 | |
| cd00381 | 325 | cd00381, IMPDH, IMPDH: The catalytic domain of the | 3e-54 | |
| PRK07107 | 502 | PRK07107, PRK07107, inosine 5-monophosphate dehydr | 1e-48 | |
| PRK05567 | 486 | PRK05567, PRK05567, inosine 5'-monophosphate dehyd | 3e-43 | |
| cd04602 | 114 | cd04602, CBS_pair_IMPDH_2, This cd contains two ta | 3e-37 | |
| PRK06843 | 404 | PRK06843, PRK06843, inosine 5-monophosphate dehydr | 3e-33 | |
| PRK07107 | 502 | PRK07107, PRK07107, inosine 5-monophosphate dehydr | 2e-25 | |
| TIGR01303 | 475 | TIGR01303, IMP_DH_rel_1, IMP dehydrogenase family | 2e-24 | |
| cd04602 | 114 | cd04602, CBS_pair_IMPDH_2, This cd contains two ta | 4e-20 | |
| PRK07807 | 479 | PRK07807, PRK07807, inosine 5-monophosphate dehydr | 2e-19 | |
| cd04601 | 110 | cd04601, CBS_pair_IMPDH, This cd contains two tand | 2e-17 | |
| TIGR01306 | 321 | TIGR01306, GMP_reduct_2, guanosine monophosphate r | 4e-15 | |
| PRK05458 | 326 | PRK05458, PRK05458, guanosine 5'-monophosphate oxi | 1e-14 | |
| TIGR01305 | 343 | TIGR01305, GMP_reduct_1, guanosine monophosphate r | 1e-14 | |
| cd04601 | 110 | cd04601, CBS_pair_IMPDH, This cd contains two tand | 8e-14 | |
| COG0516 | 170 | COG0516, GuaB, IMP dehydrogenase/GMP reductase [Nu | 5e-13 | |
| PRK06843 | 404 | PRK06843, PRK06843, inosine 5-monophosphate dehydr | 5e-12 | |
| PRK05096 | 346 | PRK05096, PRK05096, guanosine 5'-monophosphate oxi | 5e-12 | |
| PRK08649 | 368 | PRK08649, PRK08649, inosine 5-monophosphate dehydr | 2e-09 | |
| TIGR01303 | 475 | TIGR01303, IMP_DH_rel_1, IMP dehydrogenase family | 3e-09 | |
| cd02205 | 113 | cd02205, CBS_pair, The CBS domain, named after hum | 1e-08 | |
| COG0516 | 170 | COG0516, GuaB, IMP dehydrogenase/GMP reductase [Nu | 2e-08 | |
| cd04635 | 122 | cd04635, CBS_pair_22, The CBS domain, named after | 3e-08 | |
| TIGR01304 | 369 | TIGR01304, IMP_DH_rel_2, IMP dehydrogenase family | 4e-08 | |
| cd04585 | 122 | cd04585, CBS_pair_ACT_assoc2, This cd contains two | 7e-08 | |
| COG0517 | 117 | COG0517, COG0517, FOG: CBS domain [General functio | 8e-08 | |
| PRK05458 | 326 | PRK05458, PRK05458, guanosine 5'-monophosphate oxi | 1e-07 | |
| cd04722 | 200 | cd04722, TIM_phosphate_binding, TIM barrel protein | 1e-07 | |
| cd04612 | 111 | cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd cont | 1e-07 | |
| cd04803 | 122 | cd04803, CBS_pair_15, The CBS domain, named after | 3e-07 | |
| cd04599 | 105 | cd04599, CBS_pair_GGDEF_assoc2, This cd contains t | 4e-07 | |
| cd04599 | 105 | cd04599, CBS_pair_GGDEF_assoc2, This cd contains t | 4e-07 | |
| cd04610 | 107 | cd04610, CBS_pair_ParBc_assoc, This cd contains tw | 5e-07 | |
| PRK06843 | 404 | PRK06843, PRK06843, inosine 5-monophosphate dehydr | 7e-07 | |
| PRK05096 | 346 | PRK05096, PRK05096, guanosine 5'-monophosphate oxi | 9e-07 | |
| TIGR01306 | 321 | TIGR01306, GMP_reduct_2, guanosine monophosphate r | 1e-06 | |
| cd04615 | 113 | cd04615, CBS_pair_2, The CBS domain, named after h | 1e-06 | |
| smart00116 | 49 | smart00116, CBS, Domain in cystathionine beta-synt | 1e-06 | |
| cd04588 | 110 | cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This c | 2e-06 | |
| cd04631 | 125 | cd04631, CBS_pair_18, The CBS domain, named after | 4e-06 | |
| cd04607 | 113 | cd04607, CBS_pair_NTP_transferase_assoc, This cd c | 4e-06 | |
| cd04802 | 112 | cd04802, CBS_pair_3, The CBS domain, named after h | 4e-06 | |
| COG2524 | 294 | COG2524, COG2524, Predicted transcriptional regula | 1e-05 | |
| TIGR01305 | 343 | TIGR01305, GMP_reduct_1, guanosine monophosphate r | 2e-05 | |
| COG0517 | 117 | COG0517, COG0517, FOG: CBS domain [General functio | 2e-05 | |
| cd04612 | 111 | cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd cont | 2e-05 | |
| cd04801 | 114 | cd04801, CBS_pair_M50_like, This cd contains two t | 2e-05 | |
| cd04622 | 113 | cd04622, CBS_pair_9, The CBS domain, named after h | 2e-05 | |
| cd02205 | 113 | cd02205, CBS_pair, The CBS domain, named after hum | 3e-05 | |
| cd04730 | 236 | cd04730, NPD_like, 2-Nitropropane dioxygenase (NPD | 3e-05 | |
| cd04584 | 121 | cd04584, CBS_pair_ACT_assoc, This cd contains two | 4e-05 | |
| cd04585 | 122 | cd04585, CBS_pair_ACT_assoc2, This cd contains two | 5e-05 | |
| cd02809 | 299 | cd02809, alpha_hydroxyacid_oxid_FMN, Family of hom | 5e-05 | |
| pfam00571 | 57 | pfam00571, CBS, CBS domain | 6e-05 | |
| cd04633 | 121 | cd04633, CBS_pair_20, The CBS domain, named after | 6e-05 | |
| PRK14869 | 546 | PRK14869, PRK14869, putative manganese-dependent i | 9e-05 | |
| pfam01070 | 302 | pfam01070, FMN_dh, FMN-dependent dehydrogenase | 9e-05 | |
| cd04600 | 124 | cd04600, CBS_pair_HPP_assoc, This cd contains two | 9e-05 | |
| cd04584 | 121 | cd04584, CBS_pair_ACT_assoc, This cd contains two | 1e-04 | |
| COG1304 | 360 | COG1304, idi, Isopentenyl diphosphate isomerase (B | 1e-04 | |
| COG2070 | 336 | COG2070, COG2070, Dioxygenases related to 2-nitrop | 2e-04 | |
| smart00116 | 49 | smart00116, CBS, Domain in cystathionine beta-synt | 3e-04 | |
| COG3448 | 382 | COG3448, COG3448, CBS-domain-containing membrane p | 3e-04 | |
| cd04623 | 113 | cd04623, CBS_pair_10, The CBS domain, named after | 5e-04 | |
| cd04637 | 122 | cd04637, CBS_pair_24, The CBS domain, named after | 5e-04 | |
| TIGR01137 | 454 | TIGR01137, cysta_beta, cystathionine beta-synthase | 5e-04 | |
| cd04638 | 106 | cd04638, CBS_pair_25, The CBS domain, named after | 6e-04 | |
| pfam00571 | 57 | pfam00571, CBS, CBS domain | 7e-04 | |
| cd04633 | 121 | cd04633, CBS_pair_20, The CBS domain, named after | 8e-04 | |
| cd04587 | 113 | cd04587, CBS_pair_CAP-ED_DUF294_PBI_assoc, This cd | 9e-04 | |
| COG0516 | 170 | COG0516, GuaB, IMP dehydrogenase/GMP reductase [Nu | 0.001 | |
| cd02205 | 113 | cd02205, CBS_pair, The CBS domain, named after hum | 0.001 | |
| cd04631 | 125 | cd04631, CBS_pair_18, The CBS domain, named after | 0.001 | |
| cd04584 | 121 | cd04584, CBS_pair_ACT_assoc, This cd contains two | 0.001 | |
| cd04637 | 122 | cd04637, CBS_pair_24, The CBS domain, named after | 0.001 | |
| cd04622 | 113 | cd04622, CBS_pair_9, The CBS domain, named after h | 0.002 | |
| cd04730 | 236 | cd04730, NPD_like, 2-Nitropropane dioxygenase (NPD | 0.002 | |
| cd04595 | 110 | cd04595, CBS_pair_DHH_polyA_Pol_assoc, This cd con | 0.002 | |
| cd04620 | 115 | cd04620, CBS_pair_7, The CBS domain, named after h | 0.002 | |
| cd04596 | 108 | cd04596, CBS_pair_DRTGG_assoc, This cd contains tw | 0.002 | |
| pfam03060 | 329 | pfam03060, NMO, Nitronate monooxygenase | 0.003 | |
| cd04800 | 111 | cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This c | 0.003 | |
| cd04800 | 111 | cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This c | 0.003 | |
| cd04636 | 132 | cd04636, CBS_pair_23, The CBS domain, named after | 0.003 | |
| cd04722 | 200 | cd04722, TIM_phosphate_binding, TIM barrel protein | 0.004 | |
| cd04637 | 122 | cd04637, CBS_pair_24, The CBS domain, named after | 0.004 |
| >gnl|CDD|215154 PLN02274, PLN02274, inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Score = 518 bits (1336), Expect = e-180
Identities = 240/520 (46%), Positives = 319/520 (61%), Gaps = 75/520 (14%)
Query: 90 DLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAG 149
DLS+ L++ I L+ P VSSPMDTVTESDMAIAMA GGIG
Sbjct: 42 DLSTRLSRNIPLSIPCVSSPMDTVTESDMAIAMAALGGIG-------------------- 81
Query: 150 VDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGLRVGSHG 209
I+ + Q +++ K V V + + +D
Sbjct: 82 ----IVHYNNTAE-EQAAIVRKAKSRRVGF-VSDPVVKSPSSTISSLDE--------LKA 127
Query: 210 CHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISL 269
GF VTE G +G KLLG VT RD DF+ + + K+ +VMT+ +++++A AGI L
Sbjct: 128 SRGFSSVCVTETGTMGSKLLGYVTKRDWDFVNDR---ETKLSEVMTSDDDLVTAPAGIDL 184
Query: 270 EEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSK---DENNQLIVGAAIG 326
EEA +L+ SKKGKLP++N+ GEL+ L+ RTD+K+ + YP K ++ +L+VGAAIG
Sbjct: 185 EEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGYPKLGKPSVGKDGKLLVGAAIG 244
Query: 327 TREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPR 386
TRE+DK RL+ L +AGVDVV+LDSSQG+SIYQ+EMIK+IKK YP++ VIGGNV+ YQ +
Sbjct: 245 TRESDKERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQ 304
Query: 387 ATLLNFIYQIEMIKFIKKEYPDMQV---------------IGR-NGTAVYRVAEYASRRG 430
I+ ++V +GR TAVY+VA A++ G
Sbjct: 305 -------------NLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQHG 351
Query: 431 VPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLE 490
VPVIADGG+ + GH++KAL LGAST MMGS LAGT+EAPGEYF+ DGVR+KKYRGMGSLE
Sbjct: 352 VPVIADGGISNSGHIVKALTLGASTVMMGSFLAGTTEAPGEYFYQDGVRVKKYRGMGSLE 411
Query: 491 AMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAK 550
AM++ D+ + + KLK+AQGVSGA+ DKGSVL+F+PY +K G QD+GA
Sbjct: 412 AMTK------GSDQRYLGDTAKLKIAQGVSGAVADKGSVLKFVPYTMQAVKQGFQDLGAS 465
Query: 551 SLSNLRAMMYSGELKFEKRTLCAQNEGSVHGLYSYEKRLF 590
SL + ++ SG L+ E RT AQ EG VHGL SYEK+ F
Sbjct: 466 SLQSAHELLRSGTLRLEVRTGAAQVEGGVHGLVSYEKKAF 505
|
Length = 505 |
| >gnl|CDD|240355 PTZ00314, PTZ00314, inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 512 bits (1322), Expect = e-178
Identities = 233/508 (45%), Positives = 317/508 (62%), Gaps = 61/508 (12%)
Query: 90 DLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAG 149
DLS+ LT+ I L P+VSSPMDTVTE MAIAMAL GGIG ++
Sbjct: 38 DLSTRLTRNIRLKIPIVSSPMDTVTEHKMAIAMALMGGIGVIHNNCSIEE---------- 87
Query: 150 VDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGLRVGSHG 209
Q+E ++ +K+ + + ++ V++ + + +
Sbjct: 88 ---------------QVEEVRKVKR-FENGFIMDPYVLSPNHTVADVLEIKEKK------ 125
Query: 210 CHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISL 269
GF +T +GK+G KLLGIVTSRD+DF+++ + + +VMT +++ ISL
Sbjct: 126 --GFSSILITVDGKVGGKLLGIVTSRDIDFVKDKS---TPVSEVMTPREKLVVGNTPISL 180
Query: 270 EEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTRE 329
EEAN +L +S+KGKLPI+ND GEL+AL++R+DLKK+R YP++S D N QL+VGAAI TR
Sbjct: 181 EEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNRGYPNASLDSNGQLLVGAAISTRP 240
Query: 330 ADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATL 389
D R L +AGVDV+++DSSQGNSIYQI+MIK +K YP + +I GNV+ Q +
Sbjct: 241 EDIERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIAGNVVTADQAK--- 297
Query: 390 LNFI------YQIEM----IKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADGG 438
N I +I M I + ++ +GR +AVY VA YA RGVP IADGG
Sbjct: 298 -NLIDAGADGLRIGMGSGSICITQ----EVCAVGRPQASAVYHVARYARERGVPCIADGG 352
Query: 439 VQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGG 498
+++ G + KALALGA M+GSLLAGT EAPGEYFF DGVRLK YRGMGSLEAM K
Sbjct: 353 IKNSGDICKALALGADCVMLGSLLAGTEEAPGEYFFKDGVRLKVYRGMGSLEAMLSK--- 409
Query: 499 AAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRAM 558
+ +RY +E + +KVAQGVSG++VDKGSV + +PYL G+KHG Q IGA S+ L
Sbjct: 410 -ESGERY-LDENETIKVAQGVSGSVVDKGSVAKLIPYLVKGVKHGMQYIGAHSIPELHEK 467
Query: 559 MYSGELKFEKRTLCAQNEGSVHGLYSYE 586
+YSG+++FE+R+ A EG VH L+ +E
Sbjct: 468 LYSGQVRFERRSGSAIKEGGVHSLHKFE 495
|
Length = 495 |
| >gnl|CDD|215936 pfam00478, IMPDH, IMP dehydrogenase / GMP reductase domain | Back alignment and domain information |
|---|
Score = 439 bits (1132), Expect = e-150
Identities = 214/510 (41%), Positives = 279/510 (54%), Gaps = 85/510 (16%)
Query: 90 DLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAG 149
DLS+ LT+ ITL PLVS+ MDTVTES MAIAMA GGIG
Sbjct: 24 DLSTKLTRNITLNIPLVSANMDTVTESRMAIAMAREGGIG-------------------- 63
Query: 150 VDVVILDSSQGN-SI-YQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGLRVGS 207
VI N SI Q E ++ +K+ + VT + +A R
Sbjct: 64 ---VI----HKNMSIEEQAEEVRKVKRFE---SGFITDPVTVSPDTTVAEALELKER--- 110
Query: 208 HGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGI 267
+G G PVTE+GKL L+GI TSRD+DFL K+ VMT ++++A GI
Sbjct: 111 ---YGISGVPVTEDGKLLGGLVGIRTSRDIDFLS-------KVSVVMTMTEDLVTAPEGI 160
Query: 268 SLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGT 327
+LEEAN IL + K KLPI++D GEL+ LI R D++K+RDYP++SKD +L+VGAA+GT
Sbjct: 161 TLEEANEILHEHKIEKLPIVDDDGELVGLITRKDIEKARDYPNASKDAQGRLLVGAAVGT 220
Query: 328 READKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRA 387
RE D R + L +AGVDV+++DS+ G+S Y +EMIK+IKK+YP++ VI GNV+ R
Sbjct: 221 REDDLERAEALVEAGVDVIVIDSAHGHSEYVLEMIKWIKKKYPELDVIAGNVVTAEAARE 280
Query: 388 TLLNF---------------IYQIEMIKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGV 431
L++ + +GR TAVY VA+ A + GV
Sbjct: 281 -LIDAGADAVKVGIGPGSICTTREVA------------GVGRPQLTAVYEVADAARKLGV 327
Query: 432 PVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEA 491
PVIADGG++ G + KALA GAS M+GSLLAGT E+PGEY +G + K+YRGMGSL A
Sbjct: 328 PVIADGGIRYSGDIAKALAAGASAVMLGSLLAGTEESPGEYIERNGRKYKEYRGMGSLGA 387
Query: 492 MSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKS 551
M + G DRYF DK V +GV G + KGSV + L GL+ +GA S
Sbjct: 388 MEKHKGSK---DRYF-QAGDKKLVPEGVEGRVPYKGSVKDTIHQLLGGLRSSMGYVGAAS 443
Query: 552 LSNLRAMMYSGELKFEKRTLCAQN-EGSVH 580
L LR F R A EG VH
Sbjct: 444 LKELREKA------FFVRVTSAGLREGHVH 467
|
This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family. Length = 467 |
| >gnl|CDD|233350 TIGR01302, IMP_dehydrog, inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Score = 425 bits (1095), Expect = e-144
Identities = 202/485 (41%), Positives = 270/485 (55%), Gaps = 73/485 (15%)
Query: 90 DLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAG 149
DLS+ +T+ I L P++SSPMDTVTES MAIAMA GGIG
Sbjct: 22 DLSTRITRNIKLNIPILSSPMDTVTESRMAIAMAREGGIG-------------------- 61
Query: 150 VDVVILDSSQGNSI-YQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGLRVGSH 208
VI + SI Q E +K +K+ I + VT + D L +
Sbjct: 62 ---VI---HRNMSIEEQAEQVKRVKRA---ENGIISDPVTISPETTVADV----LELM-- 106
Query: 209 GCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGIS 268
G G PV E+G + KL+GI+T RD+ F+ + + +VMT E+I+ GI
Sbjct: 107 ERKGISGIPVVEDGDMTGKLVGIITKRDIRFV---KDKGKPVSEVMTR-EEVITVPEGID 162
Query: 269 LEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTR 328
LEEA +L + + KLP+++ GEL+ LI D+ K R +P +SKDEN +LIVGAA+GTR
Sbjct: 163 LEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRRKFPHASKDENGRLIVGAAVGTR 222
Query: 329 EADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRAT 388
E DK R + L +AGVDV+++DSS G+SIY I+ IK IKK YPD+ +I GNV Q +A
Sbjct: 223 EFDKERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKAL 282
Query: 389 LLNF--------------IYQIEMIKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPV 433
+ +I +G TAVY VAEYA++ G+PV
Sbjct: 283 IDAGADGLRVGIGPGSICTTRIVA------------GVGVPQITAVYDVAEYAAQSGIPV 330
Query: 434 IADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMS 493
IADGG++ G ++KALA GA M+GSLLAGT+E+PGEY +G R K+YRGMGSL AM+
Sbjct: 331 IADGGIRYSGDIVKALAAGADAVMLGSLLAGTTESPGEYEIINGRRYKQYRGMGSLGAMT 390
Query: 494 RKDGGAAAMDRYFH-NEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSL 552
+ G + DRY K V +GV GA+ KGSVL LP L GLK G +GA+S+
Sbjct: 391 K--GSS---DRYLQDENKTKKFVPEGVEGAVPYKGSVLELLPQLVGGLKSGMGYVGARSI 445
Query: 553 SNLRA 557
LR
Sbjct: 446 DELRE 450
|
This model describes IMP dehydrogenase, an enzyme of GMP biosynthesis. This form contains two CBS domains. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 450 |
| >gnl|CDD|235507 PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 297 bits (764), Expect = 2e-94
Identities = 166/523 (31%), Positives = 241/523 (46%), Gaps = 154/523 (29%)
Query: 90 DLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAG 149
DLS+ LTK I L PL+S+ MDTVTE+ MAIAMA GGIG
Sbjct: 29 DLSTQLTKNIRLNIPLLSAAMDTVTEARMAIAMAREGGIG-------------------- 68
Query: 150 VDVVI---LDSSQGNSIYQIEMIKYIKKE-----------YPDMQVIGGNVVTTDQAKNL 195
VI + + Q E ++ +K+ PD + +A L
Sbjct: 69 ---VIHKNMSIEE-----QAEEVRKVKRSESGVVTDPVTVTPDTTL--------AEALAL 112
Query: 196 IDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMT 255
+ +G G PV + KL+GI+T+RDV F ++ + +VMT
Sbjct: 113 MAR------------YGISGVPVVDENG---KLVGIITNRDVRF---ETDLSQPVSEVMT 154
Query: 256 NVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDE 315
+++ G +LEEA +L + + KLP+++D G L LI D++K+ ++P++ KDE
Sbjct: 155 KER-LVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEEFPNACKDE 213
Query: 316 NNQLIVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVI 375
+L VGAA+G ++ R + L +AGVDV+++D++ G+S
Sbjct: 214 QGRLRVGAAVGVGADNEERAEALVEAGVDVLVVDTAHGHSE------------------- 254
Query: 376 GGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRN-------------------- 415
VL + ++ IK +YPD+Q+I N
Sbjct: 255 --GVL----------------DRVREIKAKYPDVQIIAGNVATAEAARALIEAGADAVKV 296
Query: 416 ----------------G----TAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGAST 455
G TA+ AE A + G+PVIADGG++ G + KALA GAS
Sbjct: 297 GIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAAGASA 356
Query: 456 AMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYF--HNEMDKL 513
M+GS+LAGT EAPGE G K YRGMGSL AMS+ G + DRYF N DKL
Sbjct: 357 VMLGSMLAGTEEAPGEVELYQGRSYKSYRGMGSLGAMSK--GSS---DRYFQSVNAADKL 411
Query: 514 KVAQGVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLR 556
V +G+ G + KG + + L GL+ G GA ++ LR
Sbjct: 412 -VPEGIEGRVPYKGPLSEIIHQLMGGLRSGMGYTGAATIEELR 453
|
Length = 486 |
| >gnl|CDD|238223 cd00381, IMPDH, IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase | Back alignment and domain information |
|---|
Score = 270 bits (694), Expect = 2e-86
Identities = 117/260 (45%), Positives = 149/260 (57%), Gaps = 43/260 (16%)
Query: 317 NQLIVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIG 376
+L+VGAA+GTRE DK R + L +AGVDV+++DS+ G+S+Y IEMIKFIKK+YP++ VI
Sbjct: 81 GRLLVGAAVGTREDDKERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIA 140
Query: 377 GNVLFGYQPRATLLNFIYQIEMIK----FIKKEYPDMQV---------------IGR-NG 416
GNV A ++I +K V +G
Sbjct: 141 GNV---VTAEAAR-------DLIDAGADGVK-------VGIGPGSICTTRIVTGVGVPQA 183
Query: 417 TAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSD 476
TAV VA A GVPVIADGG+++ G ++KALA GA M+GSLLAGT E+PGEY +
Sbjct: 184 TAVADVAAAARDYGVPVIADGGIRTSGDIVKALAAGADAVMLGSLLAGTDESPGEYIEIN 243
Query: 477 GVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYL 536
G R K+YRGMGSL AM + G DRYF E K V +GV G + KGSV LP L
Sbjct: 244 GKRYKEYRGMGSLGAMKKGGG-----DRYFGEE-AKKLVPEGVEGIVPYKGSVKDVLPQL 297
Query: 537 QCGLKHGCQDIGAKSLSNLR 556
GL+ GAKSL L+
Sbjct: 298 VGGLRSSMGYCGAKSLKELQ 317
|
IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents. Length = 325 |
| >gnl|CDD|215154 PLN02274, PLN02274, inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Score = 227 bits (580), Expect = 2e-67
Identities = 105/247 (42%), Positives = 135/247 (54%), Gaps = 52/247 (21%)
Query: 1 IIHHNCTPEYQANEVLKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGK 60
I+H+N T E QA V K K + GF+ DPV +PS+T+ + ++K GF VTE G
Sbjct: 82 IVHYNNTAEEQAAIVRKAKSRRVGFVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGT 141
Query: 61 LGEKLLGIVTSRDVDFLENSANMDLKIEKDLSSPLTKKITLAAPLVSSPMDT-------- 112
+G KLLG VT RD DF+ D + L++ +T LV++P
Sbjct: 142 MGSKLLGYVTKRDWDFV-----------NDRETKLSEVMTSDDDLVTAPAGIDLEEAEAV 190
Query: 113 -----------VTESDMAIAMALCGGI----------------------GAAIGTREADK 139
V E + + + GAAIGTRE+DK
Sbjct: 191 LKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGYPKLGKPSVGKDGKLLVGAAIGTRESDK 250
Query: 140 YRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAG 199
RL+ L +AGVDVV+LDSSQG+SIYQ+EMIKYIKK YP++ VIGGNVVT QA+NLI AG
Sbjct: 251 ERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQAG 310
Query: 200 VDGLRVG 206
VDGLRVG
Sbjct: 311 VDGLRVG 317
|
Length = 505 |
| >gnl|CDD|240355 PTZ00314, PTZ00314, inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 223 bits (570), Expect = 4e-66
Identities = 98/237 (41%), Positives = 141/237 (59%), Gaps = 35/237 (14%)
Query: 1 IIHHNCTPEYQANEVLKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGK 60
+IH+NC+ E Q EV KVK++++GFI DP ++P+ T+ VL++K++ GF +T +GK
Sbjct: 78 VIHNNCSIEEQVEEVRKVKRFENGFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGK 137
Query: 61 LGEKLLGIVTSRDVDFLENSANMDLKIEKDLSSPLTKKITLAAPL-VSSPMDTVTESDMA 119
+G KLLGIVTSRD+DF+++ + + ++ +P K + P+ + + + ES
Sbjct: 138 VGGKLLGIVTSRDIDFVKDKS---TPVS-EVMTPREKLVVGNTPISLEEANEVLRESRKG 193
Query: 120 I---------AMALCGG---------------------IGAAIGTREADKYRLKLLSQAG 149
+AL +GAAI TR D R L +AG
Sbjct: 194 KLPIVNDNGELVALVSRSDLKKNRGYPNASLDSNGQLLVGAAISTRPEDIERAAALIEAG 253
Query: 150 VDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGLRVG 206
VDV+++DSSQGNSIYQI+MIK +K YP + +I GNVVT DQAKNLIDAG DGLR+G
Sbjct: 254 VDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDAGADGLRIG 310
|
Length = 495 |
| >gnl|CDD|215936 pfam00478, IMPDH, IMP dehydrogenase / GMP reductase domain | Back alignment and domain information |
|---|
Score = 213 bits (545), Expect = 1e-62
Identities = 96/229 (41%), Positives = 140/229 (61%), Gaps = 23/229 (10%)
Query: 1 IIHHNCTPEYQANEVLKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGK 60
+IH N + E QA EV KVK+++ GFI DPV ++P TT+ + L++K+++G G PVTE+GK
Sbjct: 64 VIHKNMSIEEQAEEVRKVKRFESGFITDPVTVSPDTTVAEALELKERYGISGVPVTEDGK 123
Query: 61 LGEKLLGIVTSRDVDFLENSANMDLKIEKDLSSP-----------LTKKITLAAPLVSSP 109
L L+GI TSRD+DFL + + E +++P L + P+V
Sbjct: 124 LLGGLVGIRTSRDIDFLSKVSVVMTMTEDLVTAPEGITLEEANEILHEHKIEKLPIVDDD 183
Query: 110 MDTV---TESDMAIA----MALCGG-----IGAAIGTREADKYRLKLLSQAGVDVVILDS 157
+ V T D+ A A +GAA+GTRE D R + L +AGVDV+++DS
Sbjct: 184 GELVGLITRKDIEKARDYPNASKDAQGRLLVGAAVGTREDDLERAEALVEAGVDVIVIDS 243
Query: 158 SQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGLRVG 206
+ G+S Y +EMIK+IKK+YP++ VI GNVVT + A+ LIDAG D ++VG
Sbjct: 244 AHGHSEYVLEMIKWIKKKYPELDVIAGNVVTAEAARELIDAGADAVKVG 292
|
This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family. Length = 467 |
| >gnl|CDD|233350 TIGR01302, IMP_dehydrog, inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Score = 205 bits (524), Expect = 8e-60
Identities = 93/235 (39%), Positives = 133/235 (56%), Gaps = 32/235 (13%)
Query: 1 IIHHNCTPEYQANEVLKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGK 60
+IH N + E QA +V +VK+ ++G I DPV I+P TT+ VL++ ++ G G PV E+G
Sbjct: 62 VIHRNMSIEEQAEQVKRVKRAENGIISDPVTISPETTVADVLELMERKGISGIPVVEDGD 121
Query: 61 LGEKLLGIVTSRDVDFLEN-----------------SANMDLKIEKDLSSPLTKKITLAA 103
+ KL+GI+T RD+ F+++ +DL+ + L +
Sbjct: 122 MTGKLVGIITKRDIRFVKDKGKPVSEVMTREEVITVPEGIDLEEALKV---LHEHRIEKL 178
Query: 104 PLVSSPMDTV---TESDMAIAMALCGG---------IGAAIGTREADKYRLKLLSQAGVD 151
P+V + V T D+ +GAA+GTRE DK R + L +AGVD
Sbjct: 179 PVVDKNGELVGLITMKDIVKRRKFPHASKDENGRLIVGAAVGTREFDKERAEALVKAGVD 238
Query: 152 VVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGLRVG 206
V+++DSS G+SIY I+ IK IKK YPD+ +I GNV T +QAK LIDAG DGLRVG
Sbjct: 239 VIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDAGADGLRVG 293
|
This model describes IMP dehydrogenase, an enzyme of GMP biosynthesis. This form contains two CBS domains. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 450 |
| >gnl|CDD|238223 cd00381, IMPDH, IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase | Back alignment and domain information |
|---|
Score = 186 bits (475), Expect = 3e-54
Identities = 78/142 (54%), Positives = 99/142 (69%), Gaps = 25/142 (17%)
Query: 90 DLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIG-------------------- 129
DLS+ LTK ITL PLVS+PMDTVTES+MAIAMA GGIG
Sbjct: 22 DLSTKLTKNITLNIPLVSAPMDTVTESEMAIAMARLGGIGVIHRNMSIEEQAEEVRKVKG 81
Query: 130 -----AAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGG 184
AA+GTRE DK R + L +AGVDV+++DS+ G+S+Y IEMIK+IKK+YP++ VI G
Sbjct: 82 RLLVGAAVGTREDDKERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAG 141
Query: 185 NVVTTDQAKNLIDAGVDGLRVG 206
NVVT + A++LIDAG DG++VG
Sbjct: 142 NVVTAEAARDLIDAGADGVKVG 163
|
IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents. Length = 325 |
| >gnl|CDD|180842 PRK07107, PRK07107, inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 176 bits (449), Expect = 1e-48
Identities = 132/438 (30%), Positives = 204/438 (46%), Gaps = 76/438 (17%)
Query: 90 DLSSPLTK-------KITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRL 142
L +PL K ITL PLVS+ M +V++ +MAIA+A GG+ G++ +
Sbjct: 32 SLKTPLVKFKKGEESAITLNIPLVSAIMQSVSDDNMAIALAREGGLSFIFGSQSIE---- 87
Query: 143 KLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDG 202
S+A M++ +K V N+ + +++D
Sbjct: 88 ---SEA------------------AMVRRVKNYKAGFVVSDSNLTPDNTLADVLDLKEK- 125
Query: 203 LRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIIS 262
G VTE+G KLLGIVTSRD + + ++D K++ MT ++++
Sbjct: 126 --------TGHSTVAVTEDGTAHGKLLGIVTSRD--YRISRMSLDTKVKDFMTPFEKLVT 175
Query: 263 AQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVG 322
A G +L+EAN I+ K LPI++ G L+ L+ R D ++ P D + + +VG
Sbjct: 176 ANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHKENPLELLDSSKRYVVG 235
Query: 323 AAIGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIG-GNVLF 381
A I TR+ R+ L +AG DV+ +DSS+G S +Q + +I+++Y D +G GNV+
Sbjct: 236 AGINTRDY-AERVPALVEAGADVLCIDSSEGYSEWQKRTLDWIREKYGDSVKVGAGNVVD 294
Query: 382 GYQPRATLLNFIYQIE----MIKF--------IKKEYPDMQVIGR-NGTAVYRVA----E 424
F Y E +K I +E + IGR TA+ VA E
Sbjct: 295 RE-------GFRYLAEAGADFVKVGIGGGSICITRE---QKGIGRGQATALIEVAKARDE 344
Query: 425 YASRRGV--PVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKK 482
Y GV P+ +DGG+ H+ ALA+GA M+G A E+P +G +K+
Sbjct: 345 YFEETGVYIPICSDGGIVYDYHMTLALAMGADFIMLGRYFARFDESPTNKVNINGNYMKE 404
Query: 483 YRGMGSLEAMS--RKDGG 498
Y G GS A + R D G
Sbjct: 405 YWGEGSNRARNWQRYDLG 422
|
Length = 502 |
| >gnl|CDD|235507 PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 161 bits (409), Expect = 3e-43
Identities = 80/244 (32%), Positives = 124/244 (50%), Gaps = 53/244 (21%)
Query: 1 IIHHNCTPEYQANEVLKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGK 60
+IH N + E QA EV KVK+ + G + DPV + P TTL + L + ++G G PV +
Sbjct: 69 VIHKNMSIEEQAEEVRKVKRSESGVVTDPVTVTPDTTLAEALALMARYGISGVPVVDENG 128
Query: 61 LGEKLLGIVTSRDVDFLENSANMDLKIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAI 120
KL+GI+T+RDV F E DLS P+++ +T LV+ P T E + +
Sbjct: 129 ---KLVGIITNRDVRF-----------ETDLSQPVSEVMT-KERLVTVPEGTTLEEALEL 173
Query: 121 AMA--------------LCGGI------------------------GAAIGTREADKYRL 142
L G I GAA+G ++ R
Sbjct: 174 LHEHRIEKLPVVDDNGRLKGLITVKDIEKAEEFPNACKDEQGRLRVGAAVGVGADNEERA 233
Query: 143 KLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDG 202
+ L +AGVDV+++D++ G+S ++ ++ IK +YPD+Q+I GNV T + A+ LI+AG D
Sbjct: 234 EALVEAGVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIAGNVATAEAARALIEAGADA 293
Query: 203 LRVG 206
++VG
Sbjct: 294 VKVG 297
|
Length = 486 |
| >gnl|CDD|239975 cd04602, CBS_pair_IMPDH_2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein | Back alignment and domain information |
|---|
Score = 133 bits (338), Expect = 3e-37
Identities = 57/94 (60%), Positives = 71/94 (75%), Gaps = 3/94 (3%)
Query: 211 HGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLE 270
GF G PVTE+GK G KLLGIVTSRD+DFL +S + + +VMT ++ A GI+LE
Sbjct: 23 KGFSGIPVTEDGKSGGKLLGIVTSRDIDFLTDS---ETPLSEVMTPREVLVVAPTGITLE 79
Query: 271 EANVILEKSKKGKLPILNDKGELIALIARTDLKK 304
EAN IL +SKKGKLPI+ND GEL+AL+ R+DLKK
Sbjct: 80 EANEILRESKKGKLPIVNDDGELVALVTRSDLKK 113
|
IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. Length = 114 |
| >gnl|CDD|180725 PRK06843, PRK06843, inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 131 bits (330), Expect = 3e-33
Identities = 106/352 (30%), Positives = 172/352 (48%), Gaps = 41/352 (11%)
Query: 234 SRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKK------------ 281
S ++ FL S+ MD E M I+ + GI + N+ +E +K
Sbjct: 40 SLNIPFL--SSAMDTVTESQMAIA---IAKEGGIGIIHKNMSIEAQRKEIEKVKTYKFQK 94
Query: 282 ----------GKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREAD 331
K I K L A + + D+P++ KD NN+L VGAA+
Sbjct: 95 TINTNGDTNEQKPEIFTAKQHLEKSDAYKNAEHKEDFPNACKDLNNKLRVGAAVSIDIDT 154
Query: 332 KNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLN 391
R++ L +A VD++++DS+ G+S IE++K IK +YP++ +I GN++ + L++
Sbjct: 155 IERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIV-TKEAALDLIS 213
Query: 392 FIYQIEMIKFIKKEYPDMQVIGRNG----TAVYRVAEYASRRGVPVIADGGVQSVGHVMK 447
+ +++ G TA+ V E + +IADGG++ G V+K
Sbjct: 214 VGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNICIIADGGIRFSGDVVK 273
Query: 448 ALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYF- 506
A+A GA + M+G+L AGT E+P E +G + K Y GMGS+ AM R + RYF
Sbjct: 274 AIAAGADSVMIGNLFAGTKESPSEEIIYNGKKFKSYVGMGSISAMKR-----GSKSRYFQ 328
Query: 507 --HNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLR 556
+NE KL V +G+ G + G + L L+ GL G +GA ++S+L+
Sbjct: 329 LENNEPKKL-VPEGIEGMVPYSGKLKDILTQLKGGLMSGMGYLGAATISDLK 379
|
Length = 404 |
| >gnl|CDD|180842 PRK07107, PRK07107, inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 2e-25
Identities = 73/239 (30%), Positives = 113/239 (47%), Gaps = 50/239 (20%)
Query: 7 TPEYQANEVLKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLL 66
+ E +A V +VK YK GF+ + P TL VL +K++ G VTE+G KLL
Sbjct: 85 SIESEAAMVRRVKNYKAGFVVSDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLL 144
Query: 67 GIVTSRDVDFLENSANMDLKIEKDLSSPLTK------KITLAA-------------PLV- 106
GIVTSR D+ + ++D K+ KD +P K TL P+V
Sbjct: 145 GIVTSR--DYRISRMSLDTKV-KDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVD 201
Query: 107 ------------------SSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQA 148
+P++ + S + +GA I TR+ R+ L +A
Sbjct: 202 KNGNLVYLVFRKDYDSHKENPLELLDSSKRYV-------VGAGINTRDY-AERVPALVEA 253
Query: 149 GVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIG-GNVVTTDQAKNLIDAGVDGLRVG 206
G DV+ +DSS+G S +Q + +I+++Y D +G GNVV + + L +AG D ++VG
Sbjct: 254 GADVLCIDSSEGYSEWQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAEAGADFVKVG 312
|
Length = 502 |
| >gnl|CDD|130370 TIGR01303, IMP_DH_rel_1, IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Score = 106 bits (265), Expect = 2e-24
Identities = 95/341 (27%), Positives = 161/341 (47%), Gaps = 22/341 (6%)
Query: 224 LGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGK 283
L ++ +G+VT D+ + ++ +M ++++A A +A +LE + +
Sbjct: 126 LEDRPVGLVTDSDL----LGVDRFTQVRDIM--STDLVTAPADTEPRKAFDLLEHAPRDV 179
Query: 284 LPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGV 343
P+++ G L ++ RT ++ Y ++ D +L +GAA+G + K L AGV
Sbjct: 180 APLVDADGTLAGILTRTGALRATIYTPAT-DAAGRLRIGAAVGINGDVGGKAKALLDAGV 238
Query: 344 DVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATL---LNFIYQIEMIK 400
DV+++D++ G+ + I IK ++ + ++ GNV+ R L N I ++ +
Sbjct: 239 DVLVIDTAHGHQVKMISAIKAVRALDLGVPIVAGNVVSAEGVRDLLEAGANII-KVGVGP 297
Query: 401 FIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMG 459
M +GR +AV A A + G V ADGGV+ V ALA GAS M+G
Sbjct: 298 GAMCTTRMMTGVGRPQFSAVLECAAEARKLGGHVWADGGVRHPRDVALALAAGASNVMVG 357
Query: 460 SLLAGTSEAPGEYFF-SDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQG 518
S AGT E+PG+ DG K+ GM S A+ + G A DR K +G
Sbjct: 358 SWFAGTYESPGDLMRDRDGRPYKESFGMASKRAVVARTGADNAFDR-----ARKALFEEG 412
Query: 519 VSGAIV----DKGSVLRFLPYLQCGLKHGCQDIGAKSLSNL 555
+S + + D+G V + ++ G++ C GA SL
Sbjct: 413 ISTSRMGLDPDRGGVEDLIDHIISGVRSSCTYAGASSLEEF 453
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302 [Unknown function, General]. Length = 475 |
| >gnl|CDD|239975 cd04602, CBS_pair_IMPDH_2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein | Back alignment and domain information |
|---|
Score = 85.7 bits (213), Expect = 4e-20
Identities = 32/55 (58%), Positives = 42/55 (76%)
Query: 26 IRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENS 80
I DP ++P T+ VL++K++ GF G PVTE+GK G KLLGIVTSRD+DFL +S
Sbjct: 1 ITDPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLTDS 55
|
IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. Length = 114 |
| >gnl|CDD|181127 PRK07807, PRK07807, inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 91.1 bits (227), Expect = 2e-19
Identities = 111/422 (26%), Positives = 176/422 (41%), Gaps = 83/422 (19%)
Query: 104 PLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQ-AGVDVVILDSSQGNS 162
PLV + M V MA +A GG+ +L Q +DVV
Sbjct: 46 PLVVANMTAVAGRRMAETVARRGGLV--------------VLPQDIPIDVVA-------- 83
Query: 163 IYQIEMIKYIKKEYP--DMQVIGGNVVTTDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTE 220
E++ ++K D V T A L+ R +HG V E
Sbjct: 84 ----EVVAWVKSRDLVFDTPVTLSPDDTVGDALALLPK-----R--AHGA----VVVVDE 128
Query: 221 NGKLGEKLLGIVTS---RDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILE 277
G+ +G+VT VD ++ VM+ ++++ AG EA +LE
Sbjct: 129 EGRP----VGVVTEADCAGVD-------RFTQVRDVMST--DLVTLPAGTDPREAFDLLE 175
Query: 278 KSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREADKNRLKL 337
++ P+++ G L+ ++ RT ++ Y + D +L V AA+G + +
Sbjct: 176 AARVKLAPVVDADGRLVGVLTRTGALRATIY-TPAVDAAGRLRVAAAVGINGDVAAKARA 234
Query: 338 LSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQI- 396
L +AGVDV+++D++ G+ +E ++ ++ P + ++ GNV+ R L+ I
Sbjct: 235 LLEAGVDVLVVDTAHGHQEKMLEALRAVRALDPGVPIVAGNVVTAEGTRD-LVEAGADIV 293
Query: 397 ------------EMIKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVG 443
M M +GR +AV A A G V ADGGV+
Sbjct: 294 KVGVGPGAMCTTRM----------MTGVGRPQFSAVLECAAAARELGAHVWADGGVRHPR 343
Query: 444 HVMKALALGASTAMMGSLLAGTSEAPGE-YFFSDGVRLKKYRGMGSLEAMSRKDGGAAAM 502
V ALA GAS M+GS AGT E+PG+ DG K+ GM S A++ + G +A
Sbjct: 344 DVALALAAGASNVMIGSWFAGTYESPGDLMRDRDGRPYKESFGMASARAVAARTAGDSAF 403
Query: 503 DR 504
DR
Sbjct: 404 DR 405
|
Length = 479 |
| >gnl|CDD|239974 cd04601, CBS_pair_IMPDH, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein | Back alignment and domain information |
|---|
Score = 77.5 bits (192), Expect = 2e-17
Identities = 35/95 (36%), Positives = 57/95 (60%), Gaps = 7/95 (7%)
Query: 211 HGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLE 270
+G G PV ++ KL+GIVT+RD+ F + +D + +VMT +++ G SLE
Sbjct: 23 YGISGLPVVDDDG---KLVGIVTNRDLRFETD---LDKPVSEVMT-PENLLTTVEGTSLE 75
Query: 271 EANVILEKSKKGKLPILNDKGELIALIARTDLKKS 305
EA +L + K KLP+++D+G+L LI D++K
Sbjct: 76 EALELLHEHKIEKLPVVDDEGKLKGLITVKDIEKR 110
|
IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. Length = 110 |
| >gnl|CDD|130373 TIGR01306, GMP_reduct_2, guanosine monophosphate reductase, bacterial | Back alignment and domain information |
|---|
Score = 76.5 bits (188), Expect = 4e-15
Identities = 60/189 (31%), Positives = 88/189 (46%), Gaps = 21/189 (11%)
Query: 313 KDENNQ-LIVGAAIGTREADKNRLKLLSQAGV--DVVILDSSQGNSIYQIEMIKFIKKEY 369
KD + L ++G + + + L++ + + + +D + G+S I MIK IK
Sbjct: 76 KDMQERGLFASISVGVKACEYEFVTQLAEEALTPEYITIDIAHGHSNSVINMIKHIKTHL 135
Query: 370 PDMQVIGGNV--------LFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNG--TAV 419
PD VI GNV L AT + I IK + G G A
Sbjct: 136 PDSFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGF------GTGGWQLAA 189
Query: 420 YRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVR 479
R A+R+ P+IADGG+++ G + K++ GAS M+GSL AG E+PGE DG
Sbjct: 190 LRWCAKAARK--PIIADGGIRTHGDIAKSIRFGASMVMIGSLFAGHEESPGETVEKDGKL 247
Query: 480 LKKYRGMGS 488
K+Y G S
Sbjct: 248 YKEYFGSAS 256
|
A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions]. Length = 321 |
| >gnl|CDD|235479 PRK05458, PRK05458, guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 1e-14
Identities = 56/194 (28%), Positives = 89/194 (45%), Gaps = 42/194 (21%)
Query: 318 QLIVGAAIGTREADKNRLKLLSQAGV--DVVILDSSQGNSIYQIEMIKFIKKEYPDMQVI 375
LI ++G ++ + + + L+ G+ + + +D + G+S I MI+ IKK P+ VI
Sbjct: 85 GLIASISVGVKDDEYDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVI 144
Query: 376 GGNVLFGYQPRATLLNFIYQIEM------------------IKFIKKEYPDMQVIGRNG- 416
GNV P A E+ I IK + G G
Sbjct: 145 AGNV---GTPEAV-------RELENAGADATKVGIGPGKVCITKIKTGF------GTGGW 188
Query: 417 --TAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFF 474
A+ A+ A + P+IADGG+++ G + K++ GA+ M+GSL AG E+PG+
Sbjct: 189 QLAALRWCAKAARK---PIIADGGIRTHGDIAKSIRFGATMVMIGSLFAGHEESPGKTVE 245
Query: 475 SDGVRLKKYRGMGS 488
DG K+Y G S
Sbjct: 246 IDGKLYKEYFGSAS 259
|
Length = 326 |
| >gnl|CDD|130372 TIGR01305, GMP_reduct_1, guanosine monophosphate reductase, eukaryotic | Back alignment and domain information |
|---|
Score = 75.0 bits (184), Expect = 1e-14
Identities = 62/259 (23%), Positives = 113/259 (43%), Gaps = 34/259 (13%)
Query: 310 DSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEY 369
+SS D + V + + +K L + + + LD + G S + +E +K +++ +
Sbjct: 89 NSSPDCLQNVAVSSGSSDNDLEKMTSILEAVPQLKFICLDVANGYSEHFVEFVKLVREAF 148
Query: 370 PDMQVIGGNVLFGYQPRATLLNFIYQIEMIKF---------IKKE----YPDMQVIGRNG 416
P+ ++ GNV+ G +L+ +++K + + YP +
Sbjct: 149 PEHTIMAGNVVTGEMVEELILS---GADIVKVGIGPGSVCTTRTKTGVGYPQL------- 198
Query: 417 TAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSD 476
+AV A+ A +I+DGG G V KA GA M+G + AG +E+ GE +
Sbjct: 199 SAVIECADAAHGLKGHIISDGGCTCPGDVAKAFGAGADFVMLGGMFAGHTESGGEVIERN 258
Query: 477 GVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYL 536
G + K + GM S AM + GG A + + ++G + + +G V + +
Sbjct: 259 GRKFKLFYGMSSDTAMKKHAGGVA-----------EYRASEGKTVEVPYRGDVENTILDI 307
Query: 537 QCGLKHGCQDIGAKSLSNL 555
GL+ C +GA L L
Sbjct: 308 LGGLRSACTYVGAAKLKEL 326
|
A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions]. Length = 343 |
| >gnl|CDD|239974 cd04601, CBS_pair_IMPDH, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein | Back alignment and domain information |
|---|
Score = 67.5 bits (166), Expect = 8e-14
Identities = 20/55 (36%), Positives = 35/55 (63%), Gaps = 3/55 (5%)
Query: 26 IRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENS 80
IRDP+ ++P T+ + L++ ++G G PV ++ KL+GIVT+RD+ F +
Sbjct: 1 IRDPITVSPDATVAEALELMAEYGISGLPVVDDDG---KLVGIVTNRDLRFETDL 52
|
IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. Length = 110 |
| >gnl|CDD|223590 COG0516, GuaB, IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 5e-13
Identities = 60/201 (29%), Positives = 86/201 (42%), Gaps = 52/201 (25%)
Query: 358 QIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLL--NFIYQIEMIKFIKKEYPDMQVIGRN 415
+ + IKK P + +VL + + + + I P QV
Sbjct: 1 VLMQVLKIKKARPG--LTFDDVLLLPA-ASDVAPAGVDVKTGLGPGIGVNIP--QV---- 51
Query: 416 GTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFS 475
+A +R + + DGG+ M G++LA E+PGEY
Sbjct: 52 -SAAMDTVT-EARMAIAMARDGGIGV---------------MHGNMLAE--ESPGEYL-- 90
Query: 476 DGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPY 535
K RGMGS++AM R YF + VAQGVSG VDKGS+ +F+PY
Sbjct: 91 ---YQK--RGMGSIDAMQR----------YF----SSVLVAQGVSGV-VDKGSIKKFIPY 130
Query: 536 LQCGLKHGCQDIGAKSLSNLR 556
L GL+ CQ IG +SL+ L+
Sbjct: 131 LYGGLQSSCQYIGCRSLTLLK 151
|
Length = 170 |
| >gnl|CDD|180725 PRK06843, PRK06843, inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 67.4 bits (164), Expect = 5e-12
Identities = 32/79 (40%), Positives = 53/79 (67%)
Query: 128 IGAAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVV 187
+GAA+ R++ L +A VD++++DS+ G+S IE++K IK +YP++ +I GN+V
Sbjct: 144 VGAAVSIDIDTIERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIV 203
Query: 188 TTDQAKNLIDAGVDGLRVG 206
T + A +LI G D L+VG
Sbjct: 204 TKEAALDLISVGADCLKVG 222
|
Length = 404 |
| >gnl|CDD|235343 PRK05096, PRK05096, guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 5e-12
Identities = 68/261 (26%), Positives = 114/261 (43%), Gaps = 38/261 (14%)
Query: 310 DSSKDENNQLIVGAAIGTREADKNRLK--LLSQAGVDVVILDSSQGNSIYQIEMIKFIKK 367
+SS D ++V + GT +AD + K L ++ + +D + G S + ++ + ++
Sbjct: 90 NSSADVLKHVMV--STGTSDADFEKTKQILALSPALNFICIDVANGYSEHFVQFVAKARE 147
Query: 368 EYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKF-I---------KKE---YPDMQVIGR 414
+PD + GNV+ G +L+ +++K I K YP +
Sbjct: 148 AWPDKTICAGNVVTGEMVEELILS---GADIVKVGIGPGSVCTTRVKTGVGYPQL----- 199
Query: 415 NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFF 474
+AV A+ A G +++DGG G V KA GA M+G +LAG E+ GE
Sbjct: 200 --SAVIECADAAHGLGGQIVSDGGCTVPGDVAKAFGGGADFVMLGGMLAGHEESGGEIVE 257
Query: 475 SDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLP 534
+G + + GM S AM R GG A + + A+G + + +G V
Sbjct: 258 ENGEKFMLFYGMSSESAMKRHVGGVA-----------EYRAAEGKTVKLPLRGPVENTAR 306
Query: 535 YLQCGLKHGCQDIGAKSLSNL 555
+ GL+ C +GA L L
Sbjct: 307 DILGGLRSACTYVGASRLKEL 327
|
Length = 346 |
| >gnl|CDD|236322 PRK08649, PRK08649, inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 59.4 bits (145), Expect = 2e-09
Identities = 29/67 (43%), Positives = 38/67 (56%), Gaps = 11/67 (16%)
Query: 417 TAVYRVAEYASRRG---------VPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSE 467
TA+ VA A+RR V VIADGG+ + G + KA+A GA M+GS LA +E
Sbjct: 236 TAIADVA--AARRDYLDETGGRYVHVIADGGIGTSGDIAKAIACGADAVMLGSPLARAAE 293
Query: 468 APGEYFF 474
APG +
Sbjct: 294 APGRGWH 300
|
Length = 368 |
| >gnl|CDD|130370 TIGR01303, IMP_DH_rel_1, IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Score = 59.2 bits (143), Expect = 3e-09
Identities = 46/223 (20%), Positives = 95/223 (42%), Gaps = 37/223 (16%)
Query: 12 ANEVLKVKKYKHGFIRDPVCIAPSTTLGKVLQM--KKQHGFCGFPVTENGKLGEKLLGIV 69
+ + K + + P+ +AP T+ + + K+ HG + L ++ +G+V
Sbjct: 81 VKQTVAFVKSRDLVLDTPITLAPHDTVSDAMALIHKRAHG-AAVVI-----LEDRPVGLV 134
Query: 70 TSRDVDFLENSANMD-------LKIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAM 122
T D+ ++ + + D + AP +P + ++D +A
Sbjct: 135 TDSDLLGVDRFTQVRDIMSTDLVTAPADTEPRKAFDLLEHAPRDVAP---LVDADGTLAG 191
Query: 123 ALCGG-------------------IGAAIGTREADKYRLKLLSQAGVDVVILDSSQGNSI 163
L IGAA+G + K L AGVDV+++D++ G+ +
Sbjct: 192 ILTRTGALRATIYTPATDAAGRLRIGAAVGINGDVGGKAKALLDAGVDVLVIDTAHGHQV 251
Query: 164 YQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGLRVG 206
I IK ++ + ++ GNVV+ + ++L++AG + ++VG
Sbjct: 252 KMISAIKAVRALDLGVPIVAGNVVSAEGVRDLLEAGANIIKVG 294
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302 [Unknown function, General]. Length = 475 |
| >gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 1e-08
Identities = 28/94 (29%), Positives = 53/94 (56%), Gaps = 7/94 (7%)
Query: 211 HGFCGFPVTENGKLGEKLLGIVTSRDVD--FLENSANMDLKIEKVMTNVNEIISAQAGIS 268
HG G PV ++ +L+GIVT RD+ E + + + VMT ++++ S
Sbjct: 22 HGISGLPVVDDD---GRLVGIVTERDLLRALAEGGLDPLVTVGDVMTR--DVVTVSPDTS 76
Query: 269 LEEANVILEKSKKGKLPILNDKGELIALIARTDL 302
LEEA ++ + +LP+++D+G L+ ++ R+D+
Sbjct: 77 LEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDI 110
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113 |
| >gnl|CDD|223590 COG0516, GuaB, IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 2e-08
Identities = 23/44 (52%), Positives = 28/44 (63%)
Query: 90 DLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIG 133
D+ + L I + P VS+ MDTVTE+ MAIAMA GGIG G
Sbjct: 35 DVKTGLGPGIGVNIPQVSAAMDTVTEARMAIAMARDGGIGVMHG 78
|
Length = 170 |
| >gnl|CDD|240006 cd04635, CBS_pair_22, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 3e-08
Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 16/105 (15%)
Query: 212 GFCGFPVTENGKLGEKLLGIVTSRDV-----------DFLENSANMDLKIEKVMTNVNEI 260
GF G PV + +L+GI+T RD+ D +EK+M+ +
Sbjct: 23 GFTGLPVVQKAG---ELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKIMST--PV 77
Query: 261 ISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKS 305
S S+ A ++ + G+LP++N+K +L+ ++ R D+ K+
Sbjct: 78 YSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLKA 122
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122 |
| >gnl|CDD|233351 TIGR01304, IMP_DH_rel_2, IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 4e-08
Identities = 23/46 (50%), Positives = 33/46 (71%)
Query: 429 RGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFF 474
R V VIADGG+++ G ++KA+A GA ++GS LA +EAPG +F
Sbjct: 254 RYVHVIADGGIETSGDLVKAIACGADAVVLGSPLARAAEAPGRGYF 299
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302 [Unknown function, General]. Length = 369 |
| >gnl|CDD|239958 cd04585, CBS_pair_ACT_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 7e-08
Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 18/98 (18%)
Query: 217 PVTENGKLGEKLLGIVTSRDVD-------FLENSANM-----DLKIEKVMTNVNEIISAQ 264
PV + GKL +GIVT RD+ + + +K+ +MT + I+
Sbjct: 28 PVVDRGKL----VGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSDIMTR--DPITVS 81
Query: 265 AGISLEEANVILEKSKKGKLPILNDKGELIALIARTDL 302
S+EEA ++ + K LP+++D+G L+ +I +DL
Sbjct: 82 PDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDL 119
|
Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 122 |
| >gnl|CDD|223591 COG0517, COG0517, FOG: CBS domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 8e-08
Identities = 29/95 (30%), Positives = 54/95 (56%), Gaps = 9/95 (9%)
Query: 211 HGFCGFPVTENGKLGEKLLGIVTSRDV-DFLENSANMDLKIEKVMTNVNEIISAQAGISL 269
+G PV ++GKL +GI+T RD+ L L +++VMT +++ L
Sbjct: 28 NGVSAVPVVDDGKL----VGIITERDILRALAAGGKRLLPVKEVMTKP--VVTVDPDTPL 81
Query: 270 EEA-NVILEKSKKGKLPILNDKG-ELIALIARTDL 302
EEA +++E+ K +LP+++D G +L+ +I +D+
Sbjct: 82 EEALELMVERHKIRRLPVVDDDGGKLVGIITLSDI 116
|
Length = 117 |
| >gnl|CDD|235479 PRK05458, PRK05458, guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 1e-07
Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 27/134 (20%)
Query: 100 TLAAPLVSSPMDTVTESDMAIAMALCG-----------------------GIGAAI--GT 134
T P+V + M T+ + +A +A G G+ A+I G
Sbjct: 35 TFKLPVVPANMQTIIDEKIAEWLAENGYFYIMHRFDPEARIPFIKDMHEQGLIASISVGV 94
Query: 135 READKYRLKLLSQAGV--DVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQA 192
++ + + L+ G+ + + +D + G+S I MI++IKK P+ VI GNV T +
Sbjct: 95 KDDEYDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAV 154
Query: 193 KNLIDAGVDGLRVG 206
+ L +AG D +VG
Sbjct: 155 RELENAGADATKVG 168
|
Length = 326 |
| >gnl|CDD|240073 cd04722, TIM_phosphate_binding, TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 1e-07
Identities = 30/147 (20%), Positives = 52/147 (35%), Gaps = 4/147 (2%)
Query: 315 ENNQLIVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNSI-YQIEMIKFIKKEYPDMQ 373
+ + A A AG D V + + G +E+I+ +++ PD++
Sbjct: 57 DLPLGVQLAINDAAAAVDIAAAAARAAGADGVEIHGAVGYLAREDLELIRELREAVPDVK 116
Query: 374 VIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPV 433
V+ G A ++ + + A + VPV
Sbjct: 117 VVVKLSPTGELAAAAAEE--AGVDEVG-LGNGGGGGGGRDAVPIADLLLILAKRGSKVPV 173
Query: 434 IADGGVQSVGHVMKALALGASTAMMGS 460
IA GG+ +ALALGA ++GS
Sbjct: 174 IAGGGINDPEDAAEALALGADGVIVGS 200
|
Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN. Length = 200 |
| >gnl|CDD|239985 cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 1e-07
Identities = 26/95 (27%), Positives = 50/95 (52%), Gaps = 11/95 (11%)
Query: 211 HGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMD---LKIEKVMTNVNEIISAQAGI 267
G+PV ++G+L +GIVT D+ A + + VMT + ++A
Sbjct: 22 ERHRGYPVVDDGRL----VGIVTLADIR--RVPAEGREATVLVGDVMTR--DPVTASPDE 73
Query: 268 SLEEANVILEKSKKGKLPILNDKGELIALIARTDL 302
+L +A + + G+LP+++D G L+ +++R+DL
Sbjct: 74 TLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDL 108
|
SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111 |
| >gnl|CDD|240116 cd04803, CBS_pair_15, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 3e-07
Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 16/103 (15%)
Query: 211 HGFCGFPVTENGKLGEKLLGIVTSRDV---------DFLENSAN--MDLKIEKVMTNVNE 259
H PV KL+G++T RD+ D E S D+ + +VM +
Sbjct: 22 HRIRHLPVVNEDG---KLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAEVMKT--D 76
Query: 260 IISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDL 302
+++ L EA I+ ++K G LP+++DKG L+ +I R+D
Sbjct: 77 VLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDF 119
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122 |
| >gnl|CDD|239972 cd04599, CBS_pair_GGDEF_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 4e-07
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 13/93 (13%)
Query: 211 HGFCGFPVTENGKLGEKLLGIVTSRDVDFL-ENSANMDLKIEKVMTNVNEIISAQAGISL 269
H G PV E+GKL +GI+TSRDV N D +V+T IS +A SL
Sbjct: 22 HRIGGLPVVEDGKL----VGIITSRDVRRAHPNRLVADAMTREVVT-----ISPEA--SL 70
Query: 270 EEANVILEKSKKGKLPILNDKGELIALIARTDL 302
EA ++E+ K +LP+L + +L+ +I + +
Sbjct: 71 LEAKRLMEEKKIERLPVLRE-RKLVGIITKGTI 102
|
The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 105 |
| >gnl|CDD|239972 cd04599, CBS_pair_GGDEF_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 4e-07
Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 4/50 (8%)
Query: 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDF 76
RDP+ I P ++G+ ++ ++H G PV E+G KL+GI+TSRDV
Sbjct: 1 RDPITIDPLDSVGRAARLMEKHRIGGLPVVEDG----KLVGIITSRDVRR 46
|
The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 105 |
| >gnl|CDD|239983 cd04610, CBS_pair_ParBc_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 5e-07
Identities = 25/91 (27%), Positives = 54/91 (59%), Gaps = 10/91 (10%)
Query: 215 GFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANV 274
GFPV +NGK+ +GIV++RD+ + D +E++M+ +++ A + + +A
Sbjct: 27 GFPVVDNGKV----VGIVSARDLLG----KDPDETVEEIMSK--DLVVAVPEMDIMDAAR 76
Query: 275 ILEKSKKGKLPILNDKGELIALIARTDLKKS 305
++ ++ KLP++++ L+ +I TD+ +S
Sbjct: 77 VMFRTGISKLPVVDENNNLVGIITNTDVIRS 107
|
CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 107 |
| >gnl|CDD|180725 PRK06843, PRK06843, inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 51.6 bits (123), Expect = 7e-07
Identities = 30/61 (49%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 69 VTSRDVDFLENSANMDLKIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGI 128
+T DV + +++ L E L + LTK I+L P +SS MDTVTES MAIA+A GGI
Sbjct: 10 LTFDDVSLIPRKSSV-LPSEVSLKTQLTKNISLNIPFLSSAMDTVTESQMAIAIAKEGGI 68
Query: 129 G 129
G
Sbjct: 69 G 69
|
Length = 404 |
| >gnl|CDD|235343 PRK05096, PRK05096, guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 9e-07
Identities = 31/132 (23%), Positives = 60/132 (45%), Gaps = 29/132 (21%)
Query: 104 PLVSSPMDTVTESDMAIAMA---------------------------LCGGIGAAIGTRE 136
P++++ MDTV +MA A+A + + + GT +
Sbjct: 48 PIIAANMDTVGTFEMAKALASFDILTAVHKHYSVEEWAAFVNNSSADVLKHVMVSTGTSD 107
Query: 137 ADKYRLK--LLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKN 194
AD + K L ++ + +D + G S + ++ + ++ +PD + GNVVT + +
Sbjct: 108 ADFEKTKQILALSPALNFICIDVANGYSEHFVQFVAKAREAWPDKTICAGNVVTGEMVEE 167
Query: 195 LIDAGVDGLRVG 206
LI +G D ++VG
Sbjct: 168 LILSGADIVKVG 179
|
Length = 346 |
| >gnl|CDD|130373 TIGR01306, GMP_reduct_2, guanosine monophosphate reductase, bacterial | Back alignment and domain information |
|---|
Score = 50.7 bits (121), Expect = 1e-06
Identities = 42/161 (26%), Positives = 71/161 (44%), Gaps = 28/161 (17%)
Query: 73 DVDFLENSANMDLKIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCG------ 126
D+ + N ++ + E D S L K P+V + M T+ + +A +A G
Sbjct: 6 DIQLIPNKCIVNSRSECDTSVTLGKH-KFKLPVVPANMQTIIDEKLAEQLAENGYFYIMH 64
Query: 127 -----------------GIGAAI--GTREADKYRLKLLSQAGV--DVVILDSSQGNSIYQ 165
G+ A+I G + + + L++ + + + +D + G+S
Sbjct: 65 RFDEESRIPFIKDMQERGLFASISVGVKACEYEFVTQLAEEALTPEYITIDIAHGHSNSV 124
Query: 166 IEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGLRVG 206
I MIK+IK PD VI GNV T + + L +AG D +VG
Sbjct: 125 INMIKHIKTHLPDSFVIAGNVGTPEAVRELENAGADATKVG 165
|
A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions]. Length = 321 |
| >gnl|CDD|239988 cd04615, CBS_pair_2, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 1e-06
Identities = 26/90 (28%), Positives = 51/90 (56%), Gaps = 7/90 (7%)
Query: 217 PVTENGKLGEKLLGIVTSRDV--DFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANV 274
PV ++ K +L+GI+T DV LE+ D K+ +VM + +I+ A S+ +A
Sbjct: 28 PVVDDKK---RLVGIITRYDVLSYALESEELKDAKVREVMNS--PVITIDANDSIAKARW 82
Query: 275 ILEKSKKGKLPILNDKGELIALIARTDLKK 304
++ + +LP+L+DKG++ ++ D+ +
Sbjct: 83 LMSNNNISRLPVLDDKGKVGGIVTEDDILR 112
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113 |
| >gnl|CDD|214522 smart00116, CBS, Domain in cystathionine beta-synthase and other proteins | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 1e-06
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 28 DPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVD 75
D V ++P TTL + L++ +++G PV + +L+GIVT RD+
Sbjct: 1 DVVTVSPDTTLEEALELLRENGIRRLPVVDE---EGRLVGIVTRRDII 45
|
Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease. Length = 49 |
| >gnl|CDD|239961 cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 2e-06
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Query: 211 HGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLE 270
H G PV ++GKL +GIVT D+ K++ VMT ++I+ L
Sbjct: 22 HHIHGAPVVDDGKL----VGIVTLSDIAHAIARGLELAKVKDVMTK--DVITIDEDEQLY 75
Query: 271 EANVILEKSKKGKLPILNDKGELIALIARTDLKKS 305
+A ++ K G+L + +D+G + +I RTD+ +S
Sbjct: 76 DAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILRS 110
|
Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110 |
| >gnl|CDD|240002 cd04631, CBS_pair_18, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 4e-06
Identities = 25/105 (23%), Positives = 52/105 (49%), Gaps = 17/105 (16%)
Query: 211 HGFCGFPVTENGKLGEKLLGIVTSRD-VDFL------------ENSANMDLKIEKVMTNV 257
+GF PV + G KL+GI+T+ D + +L ++ + +MT
Sbjct: 22 NGFRRLPVVDEGT--GKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRSIMTR- 78
Query: 258 NEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDL 302
+I+ S+++A ++ + + G LP+++D G+L+ ++ DL
Sbjct: 79 -NVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDL 122
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 125 |
| >gnl|CDD|239980 cd04607, CBS_pair_NTP_transferase_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 4e-06
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 11/91 (12%)
Query: 218 VTENGKLGEKLLGIVTSRDVDF---LENSANMDLKIEKVMTNVNEIISAQAGISLEEANV 274
V ENG+L LG VT D D L ++D + +VM N N I+A+ G S EE
Sbjct: 31 VDENGRL----LGTVT--DGDIRRALLKGLSLDDPVSEVM-NRN-PITAKVGSSREEILA 82
Query: 275 ILEKSKKGKLPILNDKGELIALIARTDLKKS 305
++ + LPIL+++G ++ L DL
Sbjct: 83 LMRERSIRHLPILDEEGRVVGLATLDDLLSK 113
|
CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 113 |
| >gnl|CDD|240115 cd04802, CBS_pair_3, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 4e-06
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 6/81 (7%)
Query: 225 GEKLLGIVTSRDV---DFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKK 281
EK +GI+T RD+ N ++ + +VM+ +I+ SL EA ++ K
Sbjct: 32 NEKPVGIITERDLVKKVVSRNLKPREVPVGEVMST--PLITIDPNASLNEAAKLMAKHGI 89
Query: 282 GKLPILNDKGELIALIARTDL 302
+LP+++D EL+ ++ TD+
Sbjct: 90 KRLPVVDD-DELVGIVTTTDI 109
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112 |
| >gnl|CDD|225321 COG2524, COG2524, Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription] | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 1e-05
Identities = 23/95 (24%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 211 HGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLE 270
G G PV ++ K+ +GI+T D+ + N+D K+ M +I+ +
Sbjct: 201 KGIRGAPVVDDDKI----VGIITLSDIAKAIANGNLDAKVSDYMRK--NVITINEDEDIY 254
Query: 271 EANVILEKSKKGKLPILNDKGELIALIARTDLKKS 305
+A ++ K+ G+L + + G+ + +I RTD+
Sbjct: 255 DAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTR 289
|
Length = 294 |
| >gnl|CDD|130372 TIGR01305, GMP_reduct_1, guanosine monophosphate reductase, eukaryotic | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 2e-05
Identities = 32/152 (21%), Positives = 72/152 (47%), Gaps = 29/152 (19%)
Query: 84 DLKIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMA-------------------- 123
D+++E+ + +K+ P++++ MDTV +MA A++
Sbjct: 27 DVELERTFTFRNSKQTYSGVPIIAANMDTVGTFEMAAALSQHSIFTAIHKHYSVDEWKAF 86
Query: 124 -------LCGGIGAAIGTREADKYRLKLLSQA--GVDVVILDSSQGNSIYQIEMIKYIKK 174
+ + G+ + D ++ + +A + + LD + G S + +E +K +++
Sbjct: 87 ATNSSPDCLQNVAVSSGSSDNDLEKMTSILEAVPQLKFICLDVANGYSEHFVEFVKLVRE 146
Query: 175 EYPDMQVIGGNVVTTDQAKNLIDAGVDGLRVG 206
+P+ ++ GNVVT + + LI +G D ++VG
Sbjct: 147 AFPEHTIMAGNVVTGEMVEELILSGADIVKVG 178
|
A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions]. Length = 343 |
| >gnl|CDD|223591 COG0517, COG0517, FOG: CBS domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 2e-05
Identities = 20/104 (19%), Positives = 38/104 (36%), Gaps = 14/104 (13%)
Query: 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLK 86
+D + + P T++ L + ++G PV ++G KL+GI+T RD+ +
Sbjct: 7 KDVITVKPDTSVRDALLLMSENGVSAVPVVDDG----KLVGIITERDI--------LRAL 54
Query: 87 IEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGA 130
K++ + P + E M I
Sbjct: 55 AAGGKRLLPVKEVMTKPVVTVDPDTPLEE--ALELMVERHKIRR 96
|
Length = 117 |
| >gnl|CDD|239985 cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 2e-05
Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 12/89 (13%)
Query: 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLK 86
D V + T+ +VL + G+PV ++G +L+GIVT D+ +
Sbjct: 1 PDVVTVPVDLTVDEVLALMFGERHRGYPVVDDG----RLVGIVTLADIR--------RVP 48
Query: 87 IEKDLSSPLTKKITLAAPLVSSPMDTVTE 115
E ++ L + P+ +SP +T+ +
Sbjct: 49 AEGREATVLVGDVMTRDPVTASPDETLRD 77
|
SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111 |
| >gnl|CDD|240114 cd04801, CBS_pair_M50_like, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50 | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 2e-05
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 216 FPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVI 275
F V +N + +GI++ D+ + S + +VMT ++++ + SL E +
Sbjct: 28 FVVVDNE---GRYVGIISLADLRAIPTSQWAQTTVIQVMTPAAKLVTVLSEESLAEVLKL 84
Query: 276 LEKSKKGKLPILNDKGELIALIARTDL 302
LE+ +L ++ D G++I LI DL
Sbjct: 85 LEEQGLDELAVVEDSGQVIGLITEADL 111
|
CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114 |
| >gnl|CDD|239994 cd04622, CBS_pair_9, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 2e-05
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 6/48 (12%)
Query: 27 RDPVCIAPSTTLGKVLQMKKQHGFCGF-PVTENGKLGEKLLGIVTSRD 73
RD V ++P T+ + ++ ++H G PV EN +L+GIVT RD
Sbjct: 1 RDVVTVSPDDTIREAARLMREHD-VGALPVCEND----RLVGIVTDRD 43
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113 |
| >gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 3e-05
Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Query: 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74
RD V ++P T+ + L++ +HG G PV ++ +L+GIVT RD+
Sbjct: 1 RDVVTVSPDDTVAEALRLMLEHGISGLPVVDD---DGRLVGIVTERDL 45
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113 |
| >gnl|CDD|240081 cd04730, NPD_like, 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 3e-05
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 419 VYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAP 469
V V + +PVIA GG+ + ALALGA MG+ T E+
Sbjct: 148 VPEVRDAVD---IPVIAAGGIADGRGIAAALALGADGVQMGTRFLATEESG 195
|
NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. Length = 236 |
| >gnl|CDD|239957 cd04584, CBS_pair_ACT_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 4e-05
Identities = 27/97 (27%), Positives = 51/97 (52%), Gaps = 17/97 (17%)
Query: 217 PVTENGKLGEKLLGIVTSRDV------DFLENSANM-----DLKIEKVMTNVNEIISAQA 265
PV + +L+GIVT RD+ F S + + ++++MT ++I+
Sbjct: 28 PVVDEEG---RLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEIMT--KDVITVHP 82
Query: 266 GISLEEANVILEKSKKGKLPILNDKGELIALIARTDL 302
++EEA +++ + + G LP++ D G L+ +I TDL
Sbjct: 83 LDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDL 118
|
Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 121 |
| >gnl|CDD|239958 cd04585, CBS_pair_ACT_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 5e-05
Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 4/48 (8%)
Query: 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74
++P+ + P T+L + L++ K++ PV + G KL+GIVT RD+
Sbjct: 1 KNPITVTPDTSLMEALKLMKENSIRRLPVVDRG----KLVGIVTDRDL 44
|
Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 122 |
| >gnl|CDD|239203 cd02809, alpha_hydroxyacid_oxid_FMN, Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 5e-05
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 426 ASRRGVPVIADGGVQSVGHVMKALALGASTAMMG 459
A + V+ DGG++ V+KALALGA ++G
Sbjct: 223 AVGGRIEVLLDGGIRRGTDVLKALALGADAVLIG 256
|
This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. Length = 299 |
| >gnl|CDD|201313 pfam00571, CBS, CBS domain | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 6e-05
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Query: 26 IRDPVCIAPSTTLGKVLQMKKQHGFCGFPVT-ENGKLGEKLLGIVTSRDV 74
D V + P T+L + L++ +++G PV E+G KL+GIVT RD+
Sbjct: 6 TPDVVTVPPDTSLEEALELMRENGISRLPVVDEDG----KLVGIVTLRDL 51
|
CBS domains are small intracellular modules that pair together to form a stable globular domain. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP. Length = 57 |
| >gnl|CDD|240004 cd04633, CBS_pair_20, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 6e-05
Identities = 26/99 (26%), Positives = 50/99 (50%), Gaps = 19/99 (19%)
Query: 216 FPVTENGKLGEKLLGIVTSRDV------------DFLENSANMDLKIEKVMTNVNEIISA 263
PV E GKL +GIVT +D+ D + +L + +MT +I+
Sbjct: 27 LPVIEGGKL----VGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDIMT--RPVITI 80
Query: 264 QAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDL 302
+ S+ + ++ ++ G LP+++D G+L+ ++ RTD+
Sbjct: 81 EPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDI 118
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 121 |
| >gnl|CDD|237843 PRK14869, PRK14869, putative manganese-dependent inorganic pyrophosphatase; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 9e-05
Identities = 49/286 (17%), Positives = 101/286 (35%), Gaps = 70/286 (24%)
Query: 26 IRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDL 85
I PV ++P T+L + + ++ PV + KLLG+V+ D+ A MD+
Sbjct: 75 IDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDE---EGKLLGLVSLSDL----ARAYMDI 127
Query: 86 KIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLL 145
+ LS + ++ + + + + + +
Sbjct: 128 LDPEILSK------------SPTSLENIIRT-----------LDGEVLVGAEEDKVEEG- 163
Query: 146 SQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGLRV 205
VV+ E + +E D+ ++G D I+AGV L
Sbjct: 164 -----KVVVA-------AMAPESLLERIEEG-DIVIVGDR---EDIQLAAIEAGVRLL-- 205
Query: 206 GSHGCHGFCGFPVTENGKLGEKLLG---------IVTSRDVDFLENSANMDLKIEKVMTN 256
+T + E +L I T D N + + +MT
Sbjct: 206 -----------IITGGAPVSEDVLELAKENGVTVISTPYDTFTTARLINQSIPVSYIMTT 254
Query: 257 VNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDL 302
+ +++ LE+ ++ KS+ P++++ G+++ +I+R L
Sbjct: 255 ED-LVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHL 299
|
Length = 546 |
| >gnl|CDD|216281 pfam01070, FMN_dh, FMN-dependent dehydrogenase | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 9e-05
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 422 VAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMG 459
+ R +PV+ DGG++ V+KALALGA ++G
Sbjct: 218 IVAAVGGR-IPVLVDGGIRRGTDVLKALALGADAVLLG 254
|
Length = 302 |
| >gnl|CDD|239973 cd04600, CBS_pair_HPP_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 9e-05
Identities = 33/134 (24%), Positives = 52/134 (38%), Gaps = 26/134 (19%)
Query: 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLK 86
RD V + P T+L + + ++H PV + + +L+GIVT R D L A D +
Sbjct: 2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGDR---RLVGIVTQR--DLLR-HARPDGR 55
Query: 87 IEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLS 146
K ++S P+ TV D IA L + LL+
Sbjct: 56 RPLRGRLRGRDKPETVGDIMSPPVVTVRP-DTPIA-EL-----------------VPLLA 96
Query: 147 QAGVD-VVILDSSQ 159
G V ++D +
Sbjct: 97 DGGHHHVPVVDEDR 110
|
These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 124 |
| >gnl|CDD|239957 cd04584, CBS_pair_ACT_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 1e-04
Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74
+D + + P T+ + + ++H PV E+G +L+GI+T D+
Sbjct: 75 KDVITVHPLDTVEEAALLMREHRIGCLPVVEDG----RLVGIITETDL 118
|
Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 121 |
| >gnl|CDD|224223 COG1304, idi, Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 1e-04
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 418 AVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMG-----SLLAGTSEA 468
++ + E R + VIADGG++S V KALALGA +G L AG
Sbjct: 262 SLPEIVEAVGDR-IEVIADGGIRSGLDVAKALALGADAVGIGRPFLYGLAAGGEAG 316
|
Length = 360 |
| >gnl|CDD|224981 COG2070, COG2070, Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 18/42 (42%), Positives = 22/42 (52%)
Query: 428 RRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAP 469
G+PVIA GG+ + ALALGA MG+ T EA
Sbjct: 182 VDGIPVIAAGGIADGRGIAAALALGADGVQMGTRFLATKEAD 223
|
Length = 336 |
| >gnl|CDD|214522 smart00116, CBS, Domain in cystathionine beta-synthase and other proteins | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 3e-04
Identities = 12/46 (26%), Positives = 30/46 (65%)
Query: 259 EIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304
++++ +LEEA +L ++ +LP+++++G L+ ++ R D+ K
Sbjct: 1 DVVTVSPDTTLEEALELLRENGIRRLPVVDEEGRLVGIVTRRDIIK 46
|
Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease. Length = 49 |
| >gnl|CDD|225979 COG3448, COG3448, CBS-domain-containing membrane protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 3e-04
Identities = 23/99 (23%), Positives = 43/99 (43%), Gaps = 12/99 (12%)
Query: 211 HGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTN--VNEIIS-----A 263
H PV + +L+GIVT RD L+++ + + + V I++
Sbjct: 274 HRIKALPVLDEH---RRLVGIVTQRD--LLKHARPSPFQRLRFLRPPTVKGIMTTPVVTV 328
Query: 264 QAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDL 302
+ E L LP+L+ G+L+ ++++TDL
Sbjct: 329 RPDTPAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDL 367
|
Length = 382 |
| >gnl|CDD|239995 cd04623, CBS_pair_10, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 5e-04
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74
R+ + + P T+ + + + + F PV + G KL+GIV+ DV
Sbjct: 67 RNVITVTPDDTVDEAMALMTERRFRHLPVVDGG----KLVGIVSIGDV 110
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113 |
| >gnl|CDD|240008 cd04637, CBS_pair_24, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 5e-04
Identities = 23/104 (22%), Positives = 49/104 (47%), Gaps = 14/104 (13%)
Query: 211 HGFCGFPVTENGKLGEKLLGIVTSRDV-----DFLENSANMDLKIEKVMTNVNEIISAQ- 264
H F V E+ +L +G+++ RD FL + + + + ++I++
Sbjct: 22 HKFHHLLVVEDNEL----VGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQIMTRDP 77
Query: 265 ----AGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304
++EA+ +L ++ LP++++ G+LI +I DL K
Sbjct: 78 ITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLK 121
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122 |
| >gnl|CDD|233287 TIGR01137, cysta_beta, cystathionine beta-synthase | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 5e-04
Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 8/95 (8%)
Query: 14 EVLKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPV-TENGKLGEKLLGIVTSR 72
+VLK K + PV + P+ T+G +++ +++GF PV TE G K+LG VT R
Sbjct: 330 DVLKNATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAG----KVLGSVTLR 385
Query: 73 DV--DFLENSANMDLKIEKDLSSPLTKKITLAAPL 105
++ AN D + K +S +I L
Sbjct: 386 ELLSALFAGKANPDDAVSKVMSKKF-IQIGEGEKL 419
|
Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven [Amino acid biosynthesis, Serine family]. Length = 454 |
| >gnl|CDD|240009 cd04638, CBS_pair_25, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 6e-04
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74
RDP ++P + + ++ ++ PV + KL+GIVT D+
Sbjct: 60 RDPPTVSPDDDVKEAAKLMVENNIRRVPVVD----DGKLVGIVTVADI 103
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 106 |
| >gnl|CDD|201313 pfam00571, CBS, CBS domain | Back alignment and domain information |
|---|
Score = 37.5 bits (88), Expect = 7e-04
Identities = 13/55 (23%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 250 IEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304
++ +MT ++++ SLEEA ++ ++ +LP++++ G+L+ ++ DL +
Sbjct: 1 VKDIMTP--DVVTVPPDTSLEEALELMRENGISRLPVVDEDGKLVGIVTLRDLLR 53
|
CBS domains are small intracellular modules that pair together to form a stable globular domain. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP. Length = 57 |
| >gnl|CDD|240004 cd04633, CBS_pair_20, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 8e-04
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74
R + I P T++ V + ++ G PV ++G KL+GIVT D+
Sbjct: 75 RPVITIEPDTSVSDVASLMLENNIGGLPVVDDG----KLVGIVTRTDI 118
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 121 |
| >gnl|CDD|239960 cd04587, CBS_pair_CAP-ED_DUF294_PBI_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 9e-04
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 11/84 (13%)
Query: 225 GEKLLGIVTSRDVDFLENSANMDLK---IEKVMTNVNEIISAQAGISLEEANVILEKSKK 281
G KL+GI TS+D+ + +D + +E+VMT ++ + EA L +
Sbjct: 32 GNKLVGIFTSKDIALRVVAQGLDPESTLVERVMTPNPVCATSDTPVL--EA---LHLMVQ 86
Query: 282 GK---LPILNDKGELIALIARTDL 302
GK LP+++ G+++ L+ T L
Sbjct: 87 GKFRHLPVVDKSGQVVGLLDVTKL 110
|
Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 113 |
| >gnl|CDD|223590 COG0516, GuaB, IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.001
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 165 QIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGLRVG 206
+ + IKK P + +V+ A ++ AGVD ++ G
Sbjct: 1 VLMQVLKIKKARPG--LTFDDVLLLPAASDVAPAGVD-VKTG 39
|
Length = 170 |
| >gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.001
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74
RD V ++P T+L + ++ +HG PV ++ +L+GIVT D+
Sbjct: 66 RDVVTVSPDTSLEEAAELMLEHGIRRLPVVDD---EGRLVGIVTRSDI 110
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113 |
| >gnl|CDD|240002 cd04631, CBS_pair_18, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.001
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD-VDFL 77
+D V + P+T + + ++ ++GF PV + G KL+GI+T+ D + +L
Sbjct: 1 KDVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGT--GKLVGIITATDILKYL 50
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 125 |
| >gnl|CDD|239957 cd04584, CBS_pair_ACT_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.001
Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 18/111 (16%)
Query: 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV------DFLENS 80
RD V I P+TT+ + L++ ++H PV + +L+GIVT RD+ F S
Sbjct: 1 RDVVTITPTTTIAEALELMREHKIRHLPVVDEEG---RLVGIVTDRDLRDASPSPFTTLS 57
Query: 81 ANMDLKIEK-DLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGA 130
+ + K + +TK + P+DTV E A + IG
Sbjct: 58 EHELYLLLKMPVKEIMTKD-----VITVHPLDTVEE---AALLMREHRIGC 100
|
Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 121 |
| >gnl|CDD|240008 cd04637, CBS_pair_24, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 0.001
Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 14/78 (17%)
Query: 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV-----DFLENSA 81
V + L +V ++ ++H F V E+ +L+G+++ RD FL +
Sbjct: 1 TRVVTVEMDDRLEEVREIFEKHKFHHLLVVEDN----ELVGVISDRDYLKAISPFLGTAG 56
Query: 82 NMDLKIEKDLSSPLTKKI 99
EKDL + L ++
Sbjct: 57 ET----EKDL-ATLNRRA 69
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122 |
| >gnl|CDD|239994 cd04622, CBS_pair_9, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 0.002
Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 9/89 (10%)
Query: 217 PVTENGKLGEKLLGIVTSRD--VDFLENSANMD-LKIEKVMTNVNEIISAQAGISLEEAN 273
PV EN +L +GIVT RD V + + D + VMT +++ ++EA
Sbjct: 28 PVCENDRL----VGIVTDRDIVVRAVAEGRDPDTTTVGDVMT--RGVVTVTEDDDVDEAA 81
Query: 274 VILEKSKKGKLPILNDKGELIALIARTDL 302
++ + + +LP+++D G L+ +++ DL
Sbjct: 82 RLMREHQVRRLPVVDDDGRLVGIVSLGDL 110
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113 |
| >gnl|CDD|240081 cd04730, NPD_like, 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 0.002
Identities = 31/132 (23%), Positives = 52/132 (39%), Gaps = 41/132 (31%)
Query: 104 PLVSSPMDTVTESDMAIAMALCGGIG---AAIGTREA----------------------- 137
P++ +PM V+ ++A A++ GG+G A T EA
Sbjct: 4 PIIQAPMAGVSTPELAAAVSNAGGLGFIGAGYLTPEALRAEIRKIRALTDKPFGVNLLVP 63
Query: 138 -----DKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTT-DQ 191
+ L++ + GV VV S G +E + K ++VI VT+ ++
Sbjct: 64 SSNPDFEALLEVALEEGVPVVSF--SFGPPAEVVERL----KAA-GIKVIP--TVTSVEE 114
Query: 192 AKNLIDAGVDGL 203
A+ AG D L
Sbjct: 115 ARKAEAAGADAL 126
|
NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. Length = 236 |
| >gnl|CDD|239968 cd04595, CBS_pair_DHH_polyA_Pol_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain | Back alignment and domain information |
|---|
Score = 38.0 bits (89), Expect = 0.002
Identities = 22/92 (23%), Positives = 46/92 (50%), Gaps = 7/92 (7%)
Query: 211 HGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLE 270
+G PV E G +++GI++ RDV+ ++ M+ ++++ L
Sbjct: 23 YGHTALPVVE----GGRVVGIISRRDVEKALRHGLGHAPVKDYMS--TDVVTVPPDTPLS 76
Query: 271 EANVILEKSKKGKLPILNDKGELIALIARTDL 302
E ++ + G++P++ D G L+ ++ RTDL
Sbjct: 77 EVQELMVEHDIGRVPVVED-GRLVGIVTRTDL 107
|
CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110 |
| >gnl|CDD|239992 cd04620, CBS_pair_7, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 0.002
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 22/96 (22%)
Query: 218 VTENGKLGEKLLGIVTSRDVDFLENSA--NMDLKIEKVMTNVNEIISAQAGISLEEANV- 274
V E G+L LGI T RD+ L DL I +VMT Q ++L+E+ +
Sbjct: 30 VVEKGRL----LGIFTERDIVRLTAIGKDLSDLPIGEVMT--------QPVVTLQESEIQ 77
Query: 275 -------ILEKSKKGKLPILNDKGELIALIARTDLK 303
+ + + LP+L+D+G+LI L+ ++
Sbjct: 78 DIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIR 113
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 115 |
| >gnl|CDD|239969 cd04596, CBS_pair_DRTGG_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream | Back alignment and domain information |
|---|
Score = 37.6 bits (88), Expect = 0.002
Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 17/94 (18%)
Query: 216 FPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANV- 274
FPV + K++GIVTS+DV + D IEKVMT I+ S+ A+V
Sbjct: 28 FPVVDEKN---KVVGIVTSKDV----AGKDPDTTIEKVMT--KNPITVNPKTSV--ASVA 76
Query: 275 ---ILEKSKKGKLPILNDKGELIALIARTDLKKS 305
I E + LP+++D +L+ +I+R D+ K+
Sbjct: 77 HMMIWEGIE--MLPVVDDNKKLLGIISRQDVLKA 108
|
The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 108 |
| >gnl|CDD|217344 pfam03060, NMO, Nitronate monooxygenase | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.003
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 421 RVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAP 469
V + +PVIA GG+ + ALALGA +G+ T EA
Sbjct: 186 TVVDAVD---IPVIAAGGIADGRGIAAALALGAEGVQIGTRFLATKEAD 231
|
Nitronate monooxygenase (NMO), formerly referred to as 2-nitropropane dioxygenase (NPD) (EC:1.13.11.32), is an FMN-dependent enzyme that uses molecular oxygen to oxidize (anionic) alkyl nitronates and, in the case of the enzyme from Neurospora crassa, (neutral) nitroalkanes to the corresponding carbonyl compounds and nitrite. Previously classified as 2-nitropropane dioxygenase, but it is now recognized that this was the result of the slow ionization of nitroalkanes to their nitronate (anionic) forms. The enzymes from the fungus Neurospora crassa and the yeast Williopsis saturnus var. mrakii (formerly classified as Hansenula mrakii) contain non-covalently bound FMN as the cofactor. Active towards linear alkyl nitronates of lengths between 2 and 6 carbon atoms and, with lower activity, towards propyl-2-nitronate. The enzyme from N. crassa can also utilize neutral nitroalkanes, but with lower activity. One atom of oxygen is incorporated into the carbonyl group of the aldehyde product. The reaction appears to involve the formation of an enzyme-bound nitronate radical and an a-peroxynitroethane species, which then decomposes, either in the active site of the enzyme or after release, to acetaldehyde and nitrite. Length = 329 |
| >gnl|CDD|240113 cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain | Back alignment and domain information |
|---|
Score = 37.5 bits (88), Expect = 0.003
Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73
P+ I P T+ + L + + G PV ++G +L+G++++ D
Sbjct: 65 APPITIPPDATVFEALLLMLERGIHHLPVVDDG----RLVGVISATD 107
|
Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111 |
| >gnl|CDD|240113 cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain | Back alignment and domain information |
|---|
Score = 37.5 bits (88), Expect = 0.003
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74
R PV +P TT+ + ++ +H V ++G +L+GIVT RD+
Sbjct: 1 RPPVTCSPDTTIREAARLMTEHRVSSLLVVDDG----RLVGIVTDRDL 44
|
Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111 |
| >gnl|CDD|240007 cd04636, CBS_pair_23, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 0.003
Identities = 11/48 (22%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74
+ + + TT+ V ++ + PV ++G KL+GI++ D+
Sbjct: 86 KKVITVDEDTTIEDVARIMSKKNIKRLPVVDDG----KLVGIISRGDI 129
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 132 |
| >gnl|CDD|240073 cd04722, TIM_phosphate_binding, TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure | Back alignment and domain information |
|---|
Score = 38.3 bits (89), Expect = 0.004
Identities = 23/117 (19%), Positives = 42/117 (35%), Gaps = 2/117 (1%)
Query: 96 TKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVIL 155
+ + V + A G A A AG D V +
Sbjct: 31 VGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDAAAAVDIAAAAARAAGADGVEI 90
Query: 156 DSSQGNSI-YQIEMIKYIKKEYPDMQVIGGNVVTTDQ-AKNLIDAGVDGLRVGSHGC 210
+ G +E+I+ +++ PD++V+ T + A +AGVD + +G+ G
Sbjct: 91 HGAVGYLAREDLELIRELREAVPDVKVVVKLSPTGELAAAAAEEAGVDEVGLGNGGG 147
|
Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN. Length = 200 |
| >gnl|CDD|240008 cd04637, CBS_pair_24, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Score = 37.3 bits (87), Expect = 0.004
Identities = 12/48 (25%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74
RDP+ ++P T + + ++ ++ PV + +L+GI+T +D+
Sbjct: 75 RDPITVSPDTPVDEASKLLLENSISCLPVVDE---NGQLIGIITWKDL 119
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 590 | |||
| KOG2550|consensus | 503 | 100.0 | ||
| PLN02274 | 505 | inosine-5'-monophosphate dehydrogenase | 100.0 | |
| PTZ00314 | 495 | inosine-5'-monophosphate dehydrogenase; Provisiona | 100.0 | |
| TIGR01303 | 475 | IMP_DH_rel_1 IMP dehydrogenase family protein. Thi | 100.0 | |
| PRK07107 | 502 | inosine 5-monophosphate dehydrogenase; Validated | 100.0 | |
| PRK05567 | 486 | inosine 5'-monophosphate dehydrogenase; Reviewed | 100.0 | |
| PRK07807 | 479 | inosine 5-monophosphate dehydrogenase; Validated | 100.0 | |
| TIGR01302 | 450 | IMP_dehydrog inosine-5'-monophosphate dehydrogenas | 100.0 | |
| PRK06843 | 404 | inosine 5-monophosphate dehydrogenase; Validated | 100.0 | |
| PF00478 | 352 | IMPDH: IMP dehydrogenase / GMP reductase domain; I | 100.0 | |
| PRK05096 | 346 | guanosine 5'-monophosphate oxidoreductase; Provisi | 100.0 | |
| TIGR01305 | 343 | GMP_reduct_1 guanosine monophosphate reductase, eu | 100.0 | |
| cd00381 | 325 | IMPDH IMPDH: The catalytic domain of the inosine m | 100.0 | |
| TIGR01306 | 321 | GMP_reduct_2 guanosine monophosphate reductase, ba | 100.0 | |
| PRK05458 | 326 | guanosine 5'-monophosphate oxidoreductase; Provisi | 100.0 | |
| PRK08649 | 368 | inosine 5-monophosphate dehydrogenase; Validated | 100.0 | |
| TIGR01304 | 369 | IMP_DH_rel_2 IMP dehydrogenase family protein. Thi | 99.92 | |
| KOG2550|consensus | 503 | 99.86 | ||
| PF01070 | 356 | FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR | 99.84 | |
| PRK11197 | 381 | lldD L-lactate dehydrogenase; Provisional | 99.83 | |
| KOG0538|consensus | 363 | 99.82 | ||
| PLN02493 | 367 | probable peroxisomal (S)-2-hydroxy-acid oxidase | 99.82 | |
| PLN02979 | 366 | glycolate oxidase | 99.82 | |
| cd04736 | 361 | MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-bin | 99.82 | |
| cd03332 | 383 | LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-bindin | 99.81 | |
| TIGR02708 | 367 | L_lactate_ox L-lactate oxidase. Members of this pr | 99.81 | |
| PLN02535 | 364 | glycolate oxidase | 99.8 | |
| cd02922 | 344 | FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom | 99.8 | |
| PTZ00314 | 495 | inosine-5'-monophosphate dehydrogenase; Provisiona | 99.79 | |
| cd02811 | 326 | IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di | 99.79 | |
| COG1304 | 360 | idi Isopentenyl diphosphate isomerase (BS_ypgA, MT | 99.77 | |
| PRK05437 | 352 | isopentenyl pyrophosphate isomerase; Provisional | 99.76 | |
| PRK05567 | 486 | inosine 5'-monophosphate dehydrogenase; Reviewed | 99.76 | |
| cd04737 | 351 | LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d | 99.76 | |
| cd02809 | 299 | alpha_hydroxyacid_oxid_FMN Family of homologous FM | 99.76 | |
| PRK07807 | 479 | inosine 5-monophosphate dehydrogenase; Validated | 99.75 | |
| TIGR02151 | 333 | IPP_isom_2 isopentenyl-diphosphate delta-isomerase | 99.74 | |
| PRK07107 | 502 | inosine 5-monophosphate dehydrogenase; Validated | 99.71 | |
| PLN02274 | 505 | inosine-5'-monophosphate dehydrogenase | 99.71 | |
| TIGR01302 | 450 | IMP_dehydrog inosine-5'-monophosphate dehydrogenas | 99.68 | |
| TIGR01303 | 475 | IMP_DH_rel_1 IMP dehydrogenase family protein. Thi | 99.67 | |
| COG2524 | 294 | Predicted transcriptional regulator, contains C-te | 99.59 | |
| cd02808 | 392 | GltS_FMN Glutamate synthase (GltS) FMN-binding dom | 99.55 | |
| PRK14869 | 546 | putative manganese-dependent inorganic pyrophospha | 99.52 | |
| COG3448 | 382 | CBS-domain-containing membrane protein [Signal tra | 99.46 | |
| cd04603 | 111 | CBS_pair_KefB_assoc This cd contains two tandem re | 99.43 | |
| PF03060 | 330 | NMO: Nitronate monooxygenase; InterPro: IPR004136 | 99.42 | |
| TIGR03151 | 307 | enACPred_II putative enoyl-(acyl-carrier-protein) | 99.4 | |
| cd04619 | 114 | CBS_pair_6 The CBS domain, named after human CBS, | 99.38 | |
| PRK07565 | 334 | dihydroorotate dehydrogenase 2; Reviewed | 99.34 | |
| PF04131 | 192 | NanE: Putative N-acetylmannosamine-6-phosphate epi | 99.34 | |
| COG2524 | 294 | Predicted transcriptional regulator, contains C-te | 99.33 | |
| cd04617 | 118 | CBS_pair_4 The CBS domain, named after human CBS, | 99.31 | |
| cd04801 | 114 | CBS_pair_M50_like This cd contains two tandem repe | 99.31 | |
| cd04618 | 98 | CBS_pair_5 The CBS domain, named after human CBS, | 99.29 | |
| cd04641 | 120 | CBS_pair_28 The CBS domain, named after human CBS, | 99.29 | |
| cd04600 | 124 | CBS_pair_HPP_assoc This cd contains two tandem rep | 99.29 | |
| cd04607 | 113 | CBS_pair_NTP_transferase_assoc This cd contains tw | 99.28 | |
| cd04630 | 114 | CBS_pair_17 The CBS domain, named after human CBS, | 99.27 | |
| COG4109 | 432 | Predicted transcriptional regulator containing CBS | 99.26 | |
| COG3620 | 187 | Predicted transcriptional regulator with C-termina | 99.26 | |
| PRK10892 | 326 | D-arabinose 5-phosphate isomerase; Provisional | 99.26 | |
| cd04593 | 115 | CBS_pair_EriC_assoc_bac_arch This cd contains two | 99.25 | |
| cd04615 | 113 | CBS_pair_2 The CBS domain, named after human CBS, | 99.25 | |
| PRK11543 | 321 | gutQ D-arabinose 5-phosphate isomerase; Provisiona | 99.24 | |
| cd04639 | 111 | CBS_pair_26 The CBS domain, named after human CBS, | 99.24 | |
| cd04596 | 108 | CBS_pair_DRTGG_assoc This cd contains two tandem r | 99.24 | |
| cd04583 | 109 | CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan | 99.24 | |
| cd04608 | 124 | CBS_pair_PALP_assoc This cd contains two tandem re | 99.23 | |
| cd04626 | 111 | CBS_pair_13 The CBS domain, named after human CBS, | 99.22 | |
| cd04602 | 114 | CBS_pair_IMPDH_2 This cd contains two tandem repea | 99.21 | |
| cd04595 | 110 | CBS_pair_DHH_polyA_Pol_assoc This cd contains two | 99.21 | |
| cd04620 | 115 | CBS_pair_7 The CBS domain, named after human CBS, | 99.21 | |
| cd04624 | 112 | CBS_pair_11 The CBS domain, named after human CBS, | 99.2 | |
| cd04627 | 123 | CBS_pair_14 The CBS domain, named after human CBS, | 99.2 | |
| cd04614 | 96 | CBS_pair_1 The CBS domain, named after human CBS, | 99.2 | |
| cd04590 | 111 | CBS_pair_CorC_HlyC_assoc This cd contains two tand | 99.2 | |
| cd04739 | 325 | DHOD_like Dihydroorotate dehydrogenase (DHOD) like | 99.2 | |
| cd04582 | 106 | CBS_pair_ABC_OpuCA_assoc This cd contains two tand | 99.2 | |
| cd04642 | 126 | CBS_pair_29 The CBS domain, named after human CBS, | 99.2 | |
| cd04587 | 113 | CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains | 99.19 | |
| cd04588 | 110 | CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains | 99.19 | |
| cd04613 | 114 | CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two | 99.19 | |
| COG3448 | 382 | CBS-domain-containing membrane protein [Signal tra | 99.19 | |
| cd04601 | 110 | CBS_pair_IMPDH This cd contains two tandem repeats | 99.19 | |
| cd04623 | 113 | CBS_pair_10 The CBS domain, named after human CBS, | 99.18 | |
| cd04605 | 110 | CBS_pair_MET2_assoc This cd contains two tandem re | 99.18 | |
| cd04606 | 109 | CBS_pair_Mg_transporter This cd contains two tande | 99.18 | |
| cd04611 | 111 | CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two | 99.18 | |
| cd04643 | 116 | CBS_pair_30 The CBS domain, named after human CBS, | 99.18 | |
| cd04803 | 122 | CBS_pair_15 The CBS domain, named after human CBS, | 99.17 | |
| cd04604 | 114 | CBS_pair_KpsF_GutQ_assoc This cd contains two tand | 99.17 | |
| cd04640 | 126 | CBS_pair_27 The CBS domain, named after human CBS, | 99.17 | |
| cd04631 | 125 | CBS_pair_18 The CBS domain, named after human CBS, | 99.17 | |
| cd04635 | 122 | CBS_pair_22 The CBS domain, named after human CBS, | 99.16 | |
| cd04621 | 135 | CBS_pair_8 The CBS domain, named after human CBS, | 99.16 | |
| cd04586 | 135 | CBS_pair_BON_assoc This cd contains two tandem rep | 99.16 | |
| COG3010 | 229 | NanE Putative N-acetylmannosamine-6-phosphate epim | 99.15 | |
| cd04610 | 107 | CBS_pair_ParBc_assoc This cd contains two tandem r | 99.15 | |
| cd04800 | 111 | CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains | 99.14 | |
| cd04629 | 114 | CBS_pair_16 The CBS domain, named after human CBS, | 99.14 | |
| COG0516 | 170 | GuaB IMP dehydrogenase/GMP reductase [Nucleotide t | 99.13 | |
| COG0517 | 117 | FOG: CBS domain [General function prediction only] | 99.13 | |
| cd04599 | 105 | CBS_pair_GGDEF_assoc2 This cd contains two tandem | 99.12 | |
| cd04632 | 128 | CBS_pair_19 The CBS domain, named after human CBS, | 99.12 | |
| COG2905 | 610 | Predicted signal-transduction protein containing c | 99.12 | |
| cd04625 | 112 | CBS_pair_12 The CBS domain, named after human CBS, | 99.12 | |
| PRK15094 | 292 | magnesium/cobalt efflux protein CorC; Provisional | 99.11 | |
| cd04622 | 113 | CBS_pair_9 The CBS domain, named after human CBS, | 99.11 | |
| cd04585 | 122 | CBS_pair_ACT_assoc2 This cd contains two tandem re | 99.11 | |
| cd04636 | 132 | CBS_pair_23 The CBS domain, named after human CBS, | 99.11 | |
| cd04589 | 111 | CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains | 99.1 | |
| cd04612 | 111 | CBS_pair_SpoIVFB_EriC_assoc This cd contains two t | 99.1 | |
| PRK01862 | 574 | putative voltage-gated ClC-type chloride channel C | 99.1 | |
| COG2070 | 336 | Dioxygenases related to 2-nitropropane dioxygenase | 99.09 | |
| cd04740 | 296 | DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c | 99.08 | |
| TIGR00400 | 449 | mgtE Mg2+ transporter (mgtE). This family of proka | 99.08 | |
| cd04594 | 104 | CBS_pair_EriC_assoc_archaea This cd contains two t | 99.08 | |
| cd04637 | 122 | CBS_pair_24 The CBS domain, named after human CBS, | 99.07 | |
| cd04802 | 112 | CBS_pair_3 The CBS domain, named after human CBS, | 99.07 | |
| PF01645 | 368 | Glu_synthase: Conserved region in glutamate syntha | 99.07 | |
| TIGR00393 | 268 | kpsF KpsF/GutQ family protein. This model describe | 99.06 | |
| cd04742 | 418 | NPD_FabD 2-Nitropropane dioxygenase (NPD)-like dom | 99.05 | |
| cd04609 | 110 | CBS_pair_PALP_assoc2 This cd contains two tandem r | 99.05 | |
| cd04633 | 121 | CBS_pair_20 The CBS domain, named after human CBS, | 99.04 | |
| TIGR02814 | 444 | pfaD_fam PfaD family protein. The protein PfaD is | 99.04 | |
| TIGR01182 | 204 | eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho | 99.02 | |
| cd04584 | 121 | CBS_pair_ACT_assoc This cd contains two tandem rep | 99.01 | |
| KOG1764|consensus | 381 | 99.01 | ||
| TIGR01037 | 300 | pyrD_sub1_fam dihydroorotate dehydrogenase (subfam | 99.01 | |
| PLN02826 | 409 | dihydroorotate dehydrogenase | 99.01 | |
| COG3620 | 187 | Predicted transcriptional regulator with C-termina | 99.01 | |
| TIGR03520 | 408 | GldE gliding motility-associated protein GldE. Mem | 99.0 | |
| PRK07259 | 301 | dihydroorotate dehydrogenase 1B; Reviewed | 98.97 | |
| cd02205 | 113 | CBS_pair The CBS domain, named after human CBS, is | 98.96 | |
| cd04591 | 105 | CBS_pair_EriC_assoc_euk_bac This cd contains two t | 98.96 | |
| cd04618 | 98 | CBS_pair_5 The CBS domain, named after human CBS, | 98.95 | |
| cd04638 | 106 | CBS_pair_25 The CBS domain, named after human CBS, | 98.95 | |
| PRK06015 | 201 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 98.94 | |
| cd04634 | 143 | CBS_pair_21 The CBS domain, named after human CBS, | 98.94 | |
| PRK01130 | 221 | N-acetylmannosamine-6-phosphate 2-epimerase; Provi | 98.93 | |
| cd04743 | 320 | NPD_PKS 2-Nitropropane dioxygenase (NPD)-like doma | 98.93 | |
| TIGR00400 | 449 | mgtE Mg2+ transporter (mgtE). This family of proka | 98.92 | |
| cd04603 | 111 | CBS_pair_KefB_assoc This cd contains two tandem re | 98.92 | |
| cd04598 | 119 | CBS_pair_GGDEF_assoc This cd contains two tandem r | 98.91 | |
| cd04641 | 120 | CBS_pair_28 The CBS domain, named after human CBS, | 98.89 | |
| PLN02495 | 385 | oxidoreductase, acting on the CH-CH group of donor | 98.87 | |
| PF01081 | 196 | Aldolase: KDPG and KHG aldolase; InterPro: IPR0008 | 98.87 | |
| TIGR01137 | 454 | cysta_beta cystathionine beta-synthase. Members of | 98.87 | |
| cd04727 | 283 | pdxS PdxS is a subunit of the pyridoxal 5'-phospha | 98.85 | |
| PF00571 | 57 | CBS: CBS domain CBS domain web page. Mutations in | 98.82 | |
| cd02810 | 289 | DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) | 98.82 | |
| PRK07114 | 222 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 98.8 | |
| COG0800 | 211 | Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Ca | 98.8 | |
| PRK10892 | 326 | D-arabinose 5-phosphate isomerase; Provisional | 98.79 | |
| PRK06552 | 213 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 98.78 | |
| COG0167 | 310 | PyrD Dihydroorotate dehydrogenase [Nucleotide tran | 98.77 | |
| cd02940 | 299 | DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM | 98.77 | |
| COG2905 | 610 | Predicted signal-transduction protein containing c | 98.76 | |
| cd04614 | 96 | CBS_pair_1 The CBS domain, named after human CBS, | 98.76 | |
| COG2239 | 451 | MgtE Mg/Co/Ni transporter MgtE (contains CBS domai | 98.75 | |
| cd04729 | 219 | NanE N-acetylmannosamine-6-phosphate epimerase (Na | 98.75 | |
| COG0069 | 485 | GltB Glutamate synthase domain 2 [Amino acid trans | 98.75 | |
| TIGR00343 | 287 | pyridoxal 5'-phosphate synthase, synthase subunit | 98.74 | |
| cd04642 | 126 | CBS_pair_29 The CBS domain, named after human CBS, | 98.74 | |
| PRK05718 | 212 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 98.73 | |
| PRK11543 | 321 | gutQ D-arabinose 5-phosphate isomerase; Provisiona | 98.72 | |
| cd04600 | 124 | CBS_pair_HPP_assoc This cd contains two tandem rep | 98.72 | |
| cd04608 | 124 | CBS_pair_PALP_assoc This cd contains two tandem re | 98.71 | |
| cd04617 | 118 | CBS_pair_4 The CBS domain, named after human CBS, | 98.7 | |
| cd04592 | 133 | CBS_pair_EriC_assoc_euk This cd contains two tande | 98.7 | |
| PRK08318 | 420 | dihydropyrimidine dehydrogenase subunit B; Validat | 98.7 | |
| cd04619 | 114 | CBS_pair_6 The CBS domain, named after human CBS, | 98.7 | |
| cd04730 | 236 | NPD_like 2-Nitropropane dioxygenase (NPD), one of | 98.68 | |
| PRK04180 | 293 | pyridoxal biosynthesis lyase PdxS; Provisional | 98.68 | |
| PRK11750 | 1485 | gltB glutamate synthase subunit alpha; Provisional | 98.67 | |
| cd04607 | 113 | CBS_pair_NTP_transferase_assoc This cd contains tw | 98.67 | |
| PRK11573 | 413 | hypothetical protein; Provisional | 98.66 | |
| COG0517 | 117 | FOG: CBS domain [General function prediction only] | 98.65 | |
| PRK02506 | 310 | dihydroorotate dehydrogenase 1A; Reviewed | 98.65 | |
| cd04627 | 123 | CBS_pair_14 The CBS domain, named after human CBS, | 98.64 | |
| cd00331 | 217 | IGPS Indole-3-glycerol phosphate synthase (IGPS); | 98.64 | |
| cd04605 | 110 | CBS_pair_MET2_assoc This cd contains two tandem re | 98.63 | |
| PF00478 | 352 | IMPDH: IMP dehydrogenase / GMP reductase domain; I | 98.62 | |
| cd04583 | 109 | CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan | 98.62 | |
| PF00571 | 57 | CBS: CBS domain CBS domain web page. Mutations in | 98.62 | |
| cd04640 | 126 | CBS_pair_27 The CBS domain, named after human CBS, | 98.6 | |
| cd04643 | 116 | CBS_pair_30 The CBS domain, named after human CBS, | 98.6 | |
| cd04582 | 106 | CBS_pair_ABC_OpuCA_assoc This cd contains two tand | 98.59 | |
| cd02801 | 231 | DUS_like_FMN Dihydrouridine synthase-like (DUS-lik | 98.58 | |
| cd04596 | 108 | CBS_pair_DRTGG_assoc This cd contains two tandem r | 98.58 | |
| cd04732 | 234 | HisA HisA. Phosphoribosylformimino-5-aminoimidazol | 98.56 | |
| cd04593 | 115 | CBS_pair_EriC_assoc_bac_arch This cd contains two | 98.55 | |
| TIGR00737 | 319 | nifR3_yhdG putative TIM-barrel protein, nifR3 fami | 98.54 | |
| cd04615 | 113 | CBS_pair_2 The CBS domain, named after human CBS, | 98.53 | |
| cd04629 | 114 | CBS_pair_16 The CBS domain, named after human CBS, | 98.53 | |
| PRK01862 | 574 | putative voltage-gated ClC-type chloride channel C | 98.53 | |
| cd04801 | 114 | CBS_pair_M50_like This cd contains two tandem repe | 98.53 | |
| cd04639 | 111 | CBS_pair_26 The CBS domain, named after human CBS, | 98.52 | |
| cd04623 | 113 | CBS_pair_10 The CBS domain, named after human CBS, | 98.52 | |
| cd04803 | 122 | CBS_pair_15 The CBS domain, named after human CBS, | 98.51 | |
| TIGR00736 | 231 | nifR3_rel_arch TIM-barrel protein, putative. Membe | 98.51 | |
| cd04602 | 114 | CBS_pair_IMPDH_2 This cd contains two tandem repea | 98.51 | |
| cd04630 | 114 | CBS_pair_17 The CBS domain, named after human CBS, | 98.51 | |
| cd04624 | 112 | CBS_pair_11 The CBS domain, named after human CBS, | 98.5 | |
| cd04599 | 105 | CBS_pair_GGDEF_assoc2 This cd contains two tandem | 98.48 | |
| cd04636 | 132 | CBS_pair_23 The CBS domain, named after human CBS, | 98.48 | |
| TIGR03520 | 408 | GldE gliding motility-associated protein GldE. Mem | 98.48 | |
| cd00452 | 190 | KDPG_aldolase KDPG and KHG aldolase. This family b | 98.47 | |
| cd04601 | 110 | CBS_pair_IMPDH This cd contains two tandem repeats | 98.47 | |
| cd04621 | 135 | CBS_pair_8 The CBS domain, named after human CBS, | 98.46 | |
| cd04586 | 135 | CBS_pair_BON_assoc This cd contains two tandem rep | 98.46 | |
| cd04635 | 122 | CBS_pair_22 The CBS domain, named after human CBS, | 98.46 | |
| TIGR00007 | 230 | phosphoribosylformimino-5-aminoimidazole carboxami | 98.46 | |
| cd04626 | 111 | CBS_pair_13 The CBS domain, named after human CBS, | 98.45 | |
| cd04722 | 200 | TIM_phosphate_binding TIM barrel proteins share a | 98.44 | |
| cd04606 | 109 | CBS_pair_Mg_transporter This cd contains two tande | 98.44 | |
| cd04595 | 110 | CBS_pair_DHH_polyA_Pol_assoc This cd contains two | 98.43 | |
| cd04590 | 111 | CBS_pair_CorC_HlyC_assoc This cd contains two tand | 98.43 | |
| cd04588 | 110 | CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains | 98.42 | |
| cd04632 | 128 | CBS_pair_19 The CBS domain, named after human CBS, | 98.41 | |
| TIGR00393 | 268 | kpsF KpsF/GutQ family protein. This model describe | 98.41 | |
| PRK13585 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.41 | |
| cd04620 | 115 | CBS_pair_7 The CBS domain, named after human CBS, | 98.41 | |
| PRK00278 | 260 | trpC indole-3-glycerol-phosphate synthase; Reviewe | 98.41 | |
| cd04613 | 114 | CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two | 98.4 | |
| COG1253 | 429 | TlyC Hemolysins and related proteins containing CB | 98.4 | |
| cd04585 | 122 | CBS_pair_ACT_assoc2 This cd contains two tandem re | 98.39 | |
| PRK15094 | 292 | magnesium/cobalt efflux protein CorC; Provisional | 98.38 | |
| PRK00208 | 250 | thiG thiazole synthase; Reviewed | 98.38 | |
| cd04587 | 113 | CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains | 98.38 | |
| cd04728 | 248 | ThiG Thiazole synthase (ThiG) is the tetrameric en | 98.37 | |
| cd04610 | 107 | CBS_pair_ParBc_assoc This cd contains two tandem r | 98.37 | |
| cd04625 | 112 | CBS_pair_12 The CBS domain, named after human CBS, | 98.37 | |
| cd04612 | 111 | CBS_pair_SpoIVFB_EriC_assoc This cd contains two t | 98.37 | |
| PRK13587 | 234 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.36 | |
| PRK05286 | 344 | dihydroorotate dehydrogenase 2; Reviewed | 98.35 | |
| cd04738 | 327 | DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl | 98.35 | |
| cd04604 | 114 | CBS_pair_KpsF_GutQ_assoc This cd contains two tand | 98.35 | |
| cd04741 | 294 | DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) c | 98.35 | |
| PRK09140 | 206 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R | 98.34 | |
| cd04622 | 113 | CBS_pair_9 The CBS domain, named after human CBS, | 98.34 | |
| cd04633 | 121 | CBS_pair_20 The CBS domain, named after human CBS, | 98.33 | |
| TIGR01305 | 343 | GMP_reduct_1 guanosine monophosphate reductase, eu | 98.33 | |
| cd04800 | 111 | CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains | 98.32 | |
| cd04591 | 105 | CBS_pair_EriC_assoc_euk_bac This cd contains two t | 98.32 | |
| cd04631 | 125 | CBS_pair_18 The CBS domain, named after human CBS, | 98.32 | |
| cd04611 | 111 | CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two | 98.31 | |
| cd04637 | 122 | CBS_pair_24 The CBS domain, named after human CBS, | 98.3 | |
| COG4109 | 432 | Predicted transcriptional regulator containing CBS | 98.3 | |
| PRK01033 | 258 | imidazole glycerol phosphate synthase subunit HisF | 98.3 | |
| TIGR01036 | 335 | pyrD_sub2 dihydroorotate dehydrogenase, subfamily | 98.29 | |
| cd04589 | 111 | CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains | 98.29 | |
| cd04584 | 121 | CBS_pair_ACT_assoc This cd contains two tandem rep | 98.29 | |
| cd02803 | 327 | OYE_like_FMN_family Old yellow enzyme (OYE)-like F | 98.29 | |
| PRK00748 | 233 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.28 | |
| cd04594 | 104 | CBS_pair_EriC_assoc_archaea This cd contains two t | 98.28 | |
| cd04802 | 112 | CBS_pair_3 The CBS domain, named after human CBS, | 98.28 | |
| TIGR03572 | 232 | WbuZ glycosyl amidation-associated protein WbuZ. T | 98.28 | |
| cd04609 | 110 | CBS_pair_PALP_assoc2 This cd contains two tandem r | 98.26 | |
| PF01180 | 295 | DHO_dh: Dihydroorotate dehydrogenase; InterPro: IP | 98.26 | |
| PRK10550 | 312 | tRNA-dihydrouridine synthase C; Provisional | 98.25 | |
| PRK10415 | 321 | tRNA-dihydrouridine synthase B; Provisional | 98.24 | |
| cd04634 | 143 | CBS_pair_21 The CBS domain, named after human CBS, | 98.24 | |
| cd04638 | 106 | CBS_pair_25 The CBS domain, named after human CBS, | 98.24 | |
| COG0107 | 256 | HisF Imidazoleglycerol-phosphate synthase [Amino a | 98.23 | |
| PRK06843 | 404 | inosine 5-monophosphate dehydrogenase; Validated | 98.23 | |
| PRK14024 | 241 | phosphoribosyl isomerase A; Provisional | 98.22 | |
| TIGR00735 | 254 | hisF imidazoleglycerol phosphate synthase, cyclase | 98.22 | |
| cd04731 | 243 | HisF The cyclase subunit of imidazoleglycerol phos | 98.22 | |
| COG0516 | 170 | GuaB IMP dehydrogenase/GMP reductase [Nucleotide t | 98.2 | |
| TIGR00262 | 256 | trpA tryptophan synthase, alpha subunit. Tryptopha | 98.19 | |
| cd02205 | 113 | CBS_pair The CBS domain, named after human CBS, is | 98.19 | |
| PF00218 | 254 | IGPS: Indole-3-glycerol phosphate synthase; InterP | 98.18 | |
| PRK02083 | 253 | imidazole glycerol phosphate synthase subunit HisF | 98.18 | |
| PF05690 | 247 | ThiG: Thiazole biosynthesis protein ThiG; InterPro | 98.17 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 98.17 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 98.17 | |
| cd04726 | 202 | KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl | 98.17 | |
| cd02911 | 233 | arch_FMN Archeal FMN-binding domain. This family o | 98.16 | |
| PRK14869 | 546 | putative manganese-dependent inorganic pyrophospha | 98.16 | |
| TIGR00742 | 318 | yjbN tRNA dihydrouridine synthase A. Members of th | 98.13 | |
| TIGR01137 | 454 | cysta_beta cystathionine beta-synthase. Members of | 98.12 | |
| PRK11815 | 333 | tRNA-dihydrouridine synthase A; Provisional | 98.07 | |
| KOG1764|consensus | 381 | 98.07 | ||
| cd04598 | 119 | CBS_pair_GGDEF_assoc This cd contains two tandem r | 98.05 | |
| PRK07695 | 201 | transcriptional regulator TenI; Provisional | 98.05 | |
| CHL00162 | 267 | thiG thiamin biosynthesis protein G; Validated | 98.04 | |
| cd02931 | 382 | ER_like_FMN Enoate reductase (ER)-like FMN-binding | 98.03 | |
| cd02932 | 336 | OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN | 98.01 | |
| PF00977 | 229 | His_biosynth: Histidine biosynthesis protein; Inte | 98.01 | |
| COG0106 | 241 | HisA Phosphoribosylformimino-5-aminoimidazole carb | 98.0 | |
| PRK05096 | 346 | guanosine 5'-monophosphate oxidoreductase; Provisi | 98.0 | |
| cd04597 | 113 | CBS_pair_DRTGG_assoc2 This cd contains two tandem | 98.0 | |
| PLN02591 | 250 | tryptophan synthase | 97.99 | |
| PRK13957 | 247 | indole-3-glycerol-phosphate synthase; Provisional | 97.98 | |
| PRK14114 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.98 | |
| CHL00200 | 263 | trpA tryptophan synthase alpha subunit; Provisiona | 97.96 | |
| cd04592 | 133 | CBS_pair_EriC_assoc_euk This cd contains two tande | 97.92 | |
| cd04733 | 338 | OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN | 97.91 | |
| cd04735 | 353 | OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN | 97.89 | |
| PRK13523 | 337 | NADPH dehydrogenase NamA; Provisional | 97.89 | |
| cd04734 | 343 | OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN | 97.89 | |
| cd00564 | 196 | TMP_TenI Thiamine monophosphate synthase (TMP synt | 97.88 | |
| PRK04128 | 228 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.87 | |
| TIGR00734 | 221 | hisAF_rel hisA/hisF family protein. This alignment | 97.86 | |
| cd04723 | 233 | HisA_HisF Phosphoribosylformimino-5-aminoimidazole | 97.86 | |
| COG2239 | 451 | MgtE Mg/Co/Ni transporter MgtE (contains CBS domai | 97.85 | |
| TIGR01919 | 243 | hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosy | 97.83 | |
| PRK13111 | 258 | trpA tryptophan synthase subunit alpha; Provisiona | 97.82 | |
| cd02933 | 338 | OYE_like_FMN Old yellow enzyme (OYE)-like FMN bind | 97.82 | |
| PRK07455 | 187 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 97.81 | |
| COG0134 | 254 | TrpC Indole-3-glycerol phosphate synthase [Amino a | 97.8 | |
| COG0159 | 265 | TrpA Tryptophan synthase alpha chain [Amino acid t | 97.8 | |
| COG2022 | 262 | ThiG Uncharacterized enzyme of thiazole biosynthes | 97.8 | |
| cd00452 | 190 | KDPG_aldolase KDPG and KHG aldolase. This family b | 97.77 | |
| PLN02460 | 338 | indole-3-glycerol-phosphate synthase | 97.76 | |
| PRK11840 | 326 | bifunctional sulfur carrier protein/thiazole synth | 97.75 | |
| COG0042 | 323 | tRNA-dihydrouridine synthase [Translation, ribosom | 97.74 | |
| cd00956 | 211 | Transaldolase_FSA Transaldolase-like fructose-6-ph | 97.74 | |
| PRK04302 | 223 | triosephosphate isomerase; Provisional | 97.74 | |
| TIGR03128 | 206 | RuMP_HxlA 3-hexulose-6-phosphate synthase. at the | 97.73 | |
| PRK09140 | 206 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R | 97.73 | |
| PRK07455 | 187 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 97.71 | |
| cd04597 | 113 | CBS_pair_DRTGG_assoc2 This cd contains two tandem | 97.71 | |
| PLN02446 | 262 | (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy | 97.71 | |
| cd04724 | 242 | Tryptophan_synthase_alpha Ttryptophan synthase (TR | 97.7 | |
| PRK00043 | 212 | thiE thiamine-phosphate pyrophosphorylase; Reviewe | 97.7 | |
| PRK13802 | 695 | bifunctional indole-3-glycerol phosphate synthase/ | 97.7 | |
| PF00290 | 259 | Trp_syntA: Tryptophan synthase alpha chain; InterP | 97.68 | |
| PRK05848 | 273 | nicotinate-nucleotide pyrophosphorylase; Provision | 97.66 | |
| KOG0474|consensus | 762 | 97.62 | ||
| COG4535 | 293 | CorC Putative Mg2+ and Co2+ transporter CorC [Inor | 97.62 | |
| PRK13586 | 232 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.61 | |
| PRK06552 | 213 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 97.59 | |
| PLN02334 | 229 | ribulose-phosphate 3-epimerase | 97.57 | |
| PRK13125 | 244 | trpA tryptophan synthase subunit alpha; Provisiona | 97.55 | |
| cd00945 | 201 | Aldolase_Class_I Class I aldolases. The class I al | 97.54 | |
| cd02930 | 353 | DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-bindin | 97.52 | |
| PRK08883 | 220 | ribulose-phosphate 3-epimerase; Provisional | 97.52 | |
| PRK08255 | 765 | salicylyl-CoA 5-hydroxylase; Reviewed | 97.51 | |
| PRK07028 | 430 | bifunctional hexulose-6-phosphate synthase/ribonuc | 97.51 | |
| smart00116 | 49 | CBS Domain in cystathionine beta-synthase and othe | 97.51 | |
| COG1902 | 363 | NemA NADH:flavin oxidoreductases, Old Yellow Enzym | 97.51 | |
| COG4536 | 423 | CorB Putative Mg2+ and Co2+ transporter CorB [Inor | 97.49 | |
| cd04747 | 361 | OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN | 97.49 | |
| KOG2335|consensus | 358 | 97.48 | ||
| cd00958 | 235 | DhnA Class I fructose-1,6-bisphosphate (FBP) aldol | 97.47 | |
| PRK00507 | 221 | deoxyribose-phosphate aldolase; Provisional | 97.44 | |
| TIGR00693 | 196 | thiE thiamine-phosphate pyrophosphorylase. This mo | 97.44 | |
| PRK09427 | 454 | bifunctional indole-3-glycerol phosphate synthase/ | 97.43 | |
| TIGR01182 | 204 | eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho | 97.42 | |
| PF01207 | 309 | Dus: Dihydrouridine synthase (Dus); InterPro: IPR0 | 97.42 | |
| TIGR02129 | 253 | hisA_euk phosphoribosylformimino-5-aminoimidazole | 97.4 | |
| PRK10605 | 362 | N-ethylmaleimide reductase; Provisional | 97.39 | |
| PF04481 | 242 | DUF561: Protein of unknown function (DUF561); Inte | 97.39 | |
| PRK04169 | 232 | geranylgeranylglyceryl phosphate synthase-like pro | 97.39 | |
| COG1253 | 429 | TlyC Hemolysins and related proteins containing CB | 97.38 | |
| PF01884 | 230 | PcrB: PcrB family; InterPro: IPR008205 This entry | 97.38 | |
| cd02929 | 370 | TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) | 97.35 | |
| PLN02617 | 538 | imidazole glycerol phosphate synthase hisHF | 97.34 | |
| PF00724 | 341 | Oxidored_FMN: NADH:flavin oxidoreductase / NADH ox | 97.34 | |
| PRK07226 | 267 | fructose-bisphosphate aldolase; Provisional | 97.33 | |
| TIGR01768 | 223 | GGGP-family geranylgeranylglyceryl phosphate synth | 97.32 | |
| PRK02615 | 347 | thiamine-phosphate pyrophosphorylase; Provisional | 97.31 | |
| TIGR01163 | 210 | rpe ribulose-phosphate 3-epimerase. This family co | 97.3 | |
| cd00959 | 203 | DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of | 97.3 | |
| cd01573 | 272 | modD_like ModD; Quinolinate phosphoribosyl transfe | 97.28 | |
| PRK11573 | 413 | hypothetical protein; Provisional | 97.28 | |
| TIGR00126 | 211 | deoC deoxyribose-phosphate aldolase. Deoxyribose-p | 97.27 | |
| TIGR01769 | 205 | GGGP geranylgeranylglyceryl phosphate synthase. Th | 97.26 | |
| PRK00278 | 260 | trpC indole-3-glycerol-phosphate synthase; Reviewe | 97.24 | |
| cd00331 | 217 | IGPS Indole-3-glycerol phosphate synthase (IGPS); | 97.23 | |
| smart00116 | 49 | CBS Domain in cystathionine beta-synthase and othe | 97.22 | |
| PF02581 | 180 | TMP-TENI: Thiamine monophosphate synthase/TENI; In | 97.16 | |
| COG1646 | 240 | Predicted phosphate-binding enzymes, TIM-barrel fo | 97.15 | |
| PF01081 | 196 | Aldolase: KDPG and KHG aldolase; InterPro: IPR0008 | 97.11 | |
| PRK07428 | 288 | nicotinate-nucleotide pyrophosphorylase; Provision | 97.08 | |
| COG0352 | 211 | ThiE Thiamine monophosphate synthase [Coenzyme met | 97.05 | |
| PRK07114 | 222 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 97.04 | |
| PRK06512 | 221 | thiamine-phosphate pyrophosphorylase; Provisional | 96.98 | |
| PRK08385 | 278 | nicotinate-nucleotide pyrophosphorylase; Provision | 96.97 | |
| cd04731 | 243 | HisF The cyclase subunit of imidazoleglycerol phos | 96.94 | |
| cd01572 | 268 | QPRTase Quinolinate phosphoribosyl transferase (QA | 96.93 | |
| cd00429 | 211 | RPE Ribulose-5-phosphate 3-epimerase (RPE). This e | 96.92 | |
| PRK05742 | 277 | nicotinate-nucleotide pyrophosphorylase; Provision | 96.91 | |
| TIGR01949 | 258 | AroFGH_arch predicted phospho-2-dehydro-3-deoxyhep | 96.89 | |
| TIGR00735 | 254 | hisF imidazoleglycerol phosphate synthase, cyclase | 96.88 | |
| TIGR01306 | 321 | GMP_reduct_2 guanosine monophosphate reductase, ba | 96.88 | |
| PF01791 | 236 | DeoC: DeoC/LacD family aldolase; InterPro: IPR0029 | 96.87 | |
| PRK05718 | 212 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 96.87 | |
| cd01568 | 269 | QPRTase_NadC Quinolinate phosphoribosyl transferas | 96.87 | |
| COG0214 | 296 | SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme meta | 96.86 | |
| KOG0475|consensus | 696 | 96.85 | ||
| TIGR00078 | 265 | nadC nicotinate-nucleotide pyrophosphorylase. Syno | 96.85 | |
| PRK06015 | 201 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 96.82 | |
| PRK08091 | 228 | ribulose-phosphate 3-epimerase; Validated | 96.78 | |
| TIGR03128 | 206 | RuMP_HxlA 3-hexulose-6-phosphate synthase. at the | 96.75 | |
| KOG1436|consensus | 398 | 96.73 | ||
| PRK05581 | 220 | ribulose-phosphate 3-epimerase; Validated | 96.71 | |
| PLN02411 | 391 | 12-oxophytodienoate reductase | 96.71 | |
| COG0274 | 228 | DeoC Deoxyribose-phosphate aldolase [Nucleotide tr | 96.7 | |
| PTZ00170 | 228 | D-ribulose-5-phosphate 3-epimerase; Provisional | 96.67 | |
| PRK02083 | 253 | imidazole glycerol phosphate synthase subunit HisF | 96.65 | |
| PRK08745 | 223 | ribulose-phosphate 3-epimerase; Provisional | 96.64 | |
| TIGR01334 | 277 | modD putative molybdenum utilization protein ModD. | 96.64 | |
| PRK08072 | 277 | nicotinate-nucleotide pyrophosphorylase; Provision | 96.62 | |
| cd00405 | 203 | PRAI Phosphoribosylanthranilate isomerase (PRAI) c | 96.61 | |
| cd04732 | 234 | HisA HisA. Phosphoribosylformimino-5-aminoimidazol | 96.61 | |
| PRK08005 | 210 | epimerase; Validated | 96.59 | |
| PRK00748 | 233 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 96.57 | |
| TIGR00343 | 287 | pyridoxal 5'-phosphate synthase, synthase subunit | 96.54 | |
| PRK13585 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 96.53 | |
| cd04726 | 202 | KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl | 96.5 | |
| PRK14024 | 241 | phosphoribosyl isomerase A; Provisional | 96.47 | |
| PRK03512 | 211 | thiamine-phosphate pyrophosphorylase; Provisional | 96.44 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 96.4 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 96.38 | |
| PRK13307 | 391 | bifunctional formaldehyde-activating enzyme/3-hexu | 96.33 | |
| PRK07896 | 289 | nicotinate-nucleotide pyrophosphorylase; Provision | 96.32 | |
| PRK14057 | 254 | epimerase; Provisional | 96.32 | |
| PRK04180 | 293 | pyridoxal biosynthesis lyase PdxS; Provisional | 96.31 | |
| PRK09722 | 229 | allulose-6-phosphate 3-epimerase; Provisional | 96.31 | |
| PRK06559 | 290 | nicotinate-nucleotide pyrophosphorylase; Provision | 96.3 | |
| TIGR01304 | 369 | IMP_DH_rel_2 IMP dehydrogenase family protein. Thi | 96.25 | |
| PRK06096 | 284 | molybdenum transport protein ModD; Provisional | 96.24 | |
| COG0269 | 217 | SgbH 3-hexulose-6-phosphate synthase and related p | 96.21 | |
| PRK08649 | 368 | inosine 5-monophosphate dehydrogenase; Validated | 96.19 | |
| PRK09016 | 296 | quinolinate phosphoribosyltransferase; Validated | 96.18 | |
| COG2070 | 336 | Dioxygenases related to 2-nitropropane dioxygenase | 96.17 | |
| PRK05458 | 326 | guanosine 5'-monophosphate oxidoreductase; Provisi | 96.12 | |
| PF01729 | 169 | QRPTase_C: Quinolinate phosphoribosyl transferase, | 96.11 | |
| PF04131 | 192 | NanE: Putative N-acetylmannosamine-6-phosphate epi | 96.08 | |
| PRK04128 | 228 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 96.04 | |
| PRK08999 | 312 | hypothetical protein; Provisional | 96.04 | |
| PRK05283 | 257 | deoxyribose-phosphate aldolase; Provisional | 96.01 | |
| COG0036 | 220 | Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate | 96.01 | |
| PRK01033 | 258 | imidazole glycerol phosphate synthase subunit HisF | 96.0 | |
| PRK06543 | 281 | nicotinate-nucleotide pyrophosphorylase; Provision | 95.97 | |
| KOG1606|consensus | 296 | 95.93 | ||
| PLN02898 | 502 | HMP-P kinase/thiamin-monophosphate pyrophosphoryla | 95.91 | |
| PRK06806 | 281 | fructose-bisphosphate aldolase; Provisional | 95.88 | |
| PRK06106 | 281 | nicotinate-nucleotide pyrophosphorylase; Provision | 95.87 | |
| cd04727 | 283 | pdxS PdxS is a subunit of the pyridoxal 5'-phospha | 95.86 | |
| PRK13587 | 234 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 95.85 | |
| PF00834 | 201 | Ribul_P_3_epim: Ribulose-phosphate 3 epimerase fam | 95.85 | |
| TIGR01859 | 282 | fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, | 95.84 | |
| cd02812 | 219 | PcrB_like PcrB_like proteins. One member of this f | 95.83 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 95.81 | |
| PF03437 | 254 | BtpA: BtpA family; InterPro: IPR005137 Photosystem | 95.79 | |
| TIGR00007 | 230 | phosphoribosylformimino-5-aminoimidazole carboxami | 95.77 | |
| cd04723 | 233 | HisA_HisF Phosphoribosylformimino-5-aminoimidazole | 95.76 | |
| TIGR00875 | 213 | fsa_talC_mipB fructose-6-phosphate aldolase, TalC/ | 95.75 | |
| KOG3111|consensus | 224 | 95.74 | ||
| TIGR03572 | 232 | WbuZ glycosyl amidation-associated protein WbuZ. T | 95.74 | |
| PRK12290 | 437 | thiE thiamine-phosphate pyrophosphorylase; Reviewe | 95.68 | |
| PLN02716 | 308 | nicotinate-nucleotide diphosphorylase (carboxylati | 95.67 | |
| PRK01362 | 214 | putative translaldolase; Provisional | 95.64 | |
| PRK01130 | 221 | N-acetylmannosamine-6-phosphate 2-epimerase; Provi | 95.63 | |
| PRK06978 | 294 | nicotinate-nucleotide pyrophosphorylase; Provision | 95.62 | |
| COG4535 | 293 | CorC Putative Mg2+ and Co2+ transporter CorC [Inor | 95.58 | |
| KOG0474|consensus | 762 | 95.51 | ||
| cd04730 | 236 | NPD_like 2-Nitropropane dioxygenase (NPD), one of | 95.49 | |
| cd04743 | 320 | NPD_PKS 2-Nitropropane dioxygenase (NPD)-like doma | 95.41 | |
| PRK08227 | 264 | autoinducer 2 aldolase; Validated | 95.39 | |
| TIGR01769 | 205 | GGGP geranylgeranylglyceryl phosphate synthase. Th | 95.3 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 95.27 | |
| PRK09250 | 348 | fructose-bisphosphate aldolase; Provisional | 95.23 | |
| PLN02623 | 581 | pyruvate kinase | 95.23 | |
| TIGR02129 | 253 | hisA_euk phosphoribosylformimino-5-aminoimidazole | 95.21 | |
| PRK13306 | 216 | ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; | 95.2 | |
| TIGR00262 | 256 | trpA tryptophan synthase, alpha subunit. Tryptopha | 95.17 | |
| PF00977 | 229 | His_biosynth: Histidine biosynthesis protein; Inte | 95.03 | |
| PRK14114 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 95.01 | |
| COG0269 | 217 | SgbH 3-hexulose-6-phosphate synthase and related p | 94.98 | |
| PRK12653 | 220 | fructose-6-phosphate aldolase; Reviewed | 94.98 | |
| PRK12656 | 222 | fructose-6-phosphate aldolase; Reviewed | 94.82 | |
| COG0352 | 211 | ThiE Thiamine monophosphate synthase [Coenzyme met | 94.81 | |
| PRK06852 | 304 | aldolase; Validated | 94.79 | |
| TIGR00259 | 257 | thylakoid_BtpA membrane complex biogenesis protein | 94.67 | |
| PRK07315 | 293 | fructose-bisphosphate aldolase; Provisional | 94.61 | |
| COG1646 | 240 | Predicted phosphate-binding enzymes, TIM-barrel fo | 94.58 | |
| PRK00043 | 212 | thiE thiamine-phosphate pyrophosphorylase; Reviewe | 94.57 | |
| TIGR01768 | 223 | GGGP-family geranylgeranylglyceryl phosphate synth | 94.43 | |
| TIGR00736 | 231 | nifR3_rel_arch TIM-barrel protein, putative. Membe | 94.29 | |
| PRK06806 | 281 | fructose-bisphosphate aldolase; Provisional | 94.24 | |
| PRK13586 | 232 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 94.22 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 94.21 | |
| cd04729 | 219 | NanE N-acetylmannosamine-6-phosphate epimerase (Na | 94.14 | |
| TIGR00693 | 196 | thiE thiamine-phosphate pyrophosphorylase. This mo | 94.14 | |
| PRK13957 | 247 | indole-3-glycerol-phosphate synthase; Provisional | 94.04 | |
| COG1830 | 265 | FbaB DhnA-type fructose-1,6-bisphosphate aldolase | 93.96 | |
| PRK06801 | 286 | hypothetical protein; Provisional | 93.87 | |
| PRK12655 | 220 | fructose-6-phosphate aldolase; Reviewed | 93.76 | |
| COG3010 | 229 | NanE Putative N-acetylmannosamine-6-phosphate epim | 93.65 | |
| TIGR01163 | 210 | rpe ribulose-phosphate 3-epimerase. This family co | 93.61 | |
| PRK04169 | 232 | geranylgeranylglyceryl phosphate synthase-like pro | 93.61 | |
| PRK12376 | 236 | putative translaldolase; Provisional | 93.6 | |
| PRK12858 | 340 | tagatose 1,6-diphosphate aldolase; Reviewed | 93.6 | |
| COG4536 | 423 | CorB Putative Mg2+ and Co2+ transporter CorB [Inor | 93.59 |
| >KOG2550|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-88 Score=675.87 Aligned_cols=465 Identities=58% Similarity=0.900 Sum_probs=447.7
Q ss_pred EeccccccccCCCCCCC-CccCCcccccccccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHH
Q psy1056 69 VTSRDVDFLENSANMDL-KIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQ 147 (590)
Q Consensus 69 vT~~Did~l~~~~~~~~-~~~~~~~~~l~~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~ 147 (590)
+|+. ||+.+|.+.++ .+++++++++++.+.++.|++++|||||++..|+++|++.||+|+||.|.+
T Consensus 30 Ltyn--DfliLPg~idF~s~eVsL~t~ltr~itl~tPlvsSpMDTVtes~MAiaMAl~ggIg~IHhNct----------- 96 (503)
T KOG2550|consen 30 LTYN--DFLILPGFIDFASDEVSLQTKLTRNITLNTPLVSSPMDTVTESEMAIAMALLGGIGFIHHNCT----------- 96 (503)
T ss_pred cccc--ceeecccccccccccceeehhhhhcccccCceeccCCcccchhHHHHHHHhcCCceeeecCCC-----------
Confidence 8999 99999999999 789999999999999999999999999999999999999999999999998
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHhhhcCCCcccccccccc--hHHHHHHHHHhccccccccccccCceeeEEeeCCCCC
Q psy1056 148 AGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVT--TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLG 225 (590)
Q Consensus 148 ~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~im~~~~~~--~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~ 225 (590)
.+.|..+++++|. +... ++..|++. +.++.++++.. ..+++..+||++++.-+
T Consensus 97 --------------pe~QA~~v~~vK~-~~~g-~~~~p~v~sp~~tvg~v~~~k---------~~~gF~g~pvTe~g~~~ 151 (503)
T KOG2550|consen 97 --------------PEDQADMVRRVKN-YENG-FINNPIVISPTTTVGEVKEAK---------EKHGFSGIPVTEDGKRG 151 (503)
T ss_pred --------------HHHHHHHHHHHHH-hhcc-cccCCcccCCcccchhhhhhc---------ccccccccccccCCccc
Confidence 8899999999998 8776 77777776 89999999999 99999999999987677
Q ss_pred CeEEEEEecchhhccccccccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccc
Q psy1056 226 EKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKS 305 (590)
Q Consensus 226 ~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~ 305 (590)
.||+|+||.+|+.|.... ...+.++|++ ++++.+.+.+++++.+++.+++...|||||++|+++.+++++||.+.
T Consensus 152 ~KLvG~vtsrdi~f~~~~---~~~~~~vmt~--~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~ 226 (503)
T KOG2550|consen 152 SKLVGIITSRDIQFLEDN---SLLVSDVMTK--NPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKN 226 (503)
T ss_pred ceeEEEEehhhhhhhhcc---cchhhhhccc--ccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhhh
Confidence 899999999999988443 5889999999 78999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcccCCceEEeEeeccchhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHH
Q psy1056 306 RDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQP 385 (590)
Q Consensus 306 ~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a 385 (590)
..|+.+.++..++++.+++++.+++..++++.+.++|+|++++|++||++.+.+++++++|+.||+.+||.|||.|.+.|
T Consensus 227 ~~yPlask~~~kqll~gAaiGTre~dK~rl~ll~~aGvdvviLDSSqGnS~~qiemik~iK~~yP~l~ViaGNVVT~~qa 306 (503)
T KOG2550|consen 227 RDYPLASKDSTKQLLCGAAIGTRDDDKERLDLLVQAGVDVVILDSSQGNSIYQLEMIKYIKETYPDLQIIAGNVVTKEQA 306 (503)
T ss_pred cCCCccccCcccceeeeeccccccchhHHHHHhhhcCCcEEEEecCCCcchhHHHHHHHHHhhCCCceeeccceeeHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCEEEE-----cccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEEC
Q psy1056 386 RATLLNFIYQIEM-----IKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMG 459 (590)
Q Consensus 386 ~~l~~~Gvd~i~v-----~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g 459 (590)
+.|+++|||++.| |+|+|+. +.++|+ +.++++.+++++.+.++|+||||||++.++++|||+|||++||||
T Consensus 307 ~nLI~aGaDgLrVGMGsGSiCiTqe---vma~GrpQ~TAVy~va~~A~q~gvpviADGGiq~~Ghi~KAl~lGAstVMmG 383 (503)
T KOG2550|consen 307 ANLIAAGADGLRVGMGSGSICITQK---VMACGRPQGTAVYKVAEFANQFGVPCIADGGIQNVGHVVKALGLGASTVMMG 383 (503)
T ss_pred HHHHHccCceeEeccccCceeeece---eeeccCCcccchhhHHHHHHhcCCceeecCCcCccchhHhhhhcCchhheec
Confidence 9999999999999 9999999 999999 999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecccceeEEeeCCchhchHHHHHhh
Q psy1056 460 SLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCG 539 (590)
Q Consensus 460 ~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~~~~~~~~~~~ 539 (590)
.+|++++||||++++.||+++|.||||||+.||.+ ++..|||.+.++.+++||+++.+++||++.++|+++..+
T Consensus 384 ~lLAgtTEapGeyf~~~g~rlKkyrGMGSl~AM~~------~s~~rY~~e~dkvkiAQGVsg~v~dKGsv~kfipyl~~g 457 (503)
T KOG2550|consen 384 GLLAGTTEAPGEYFFRDGVRLKKYRGMGSLDAMES------SSQKRYFSEVDKVKIAQGVSGSVQDKGSVQKFIPYLLAG 457 (503)
T ss_pred ceeeeeeccCcceeeecCeeehhccCcchHHHHhh------hhhhccccccceEeeccCcEEEeccCcchhhhHHHHHHH
Confidence 99999999999999999999999999999999985 588899999999999999999999999999999999999
Q ss_pred hhhhCcccCcCcHHHHHHhhccCceEEEEEecCccccCCCCccccc
Q psy1056 540 LKHGCQDIGAKSLSNLRAMMYSGELKFEKRTLCAQNEGSVHGLYSY 585 (590)
Q Consensus 540 l~~~m~~~G~~~i~~l~~~~~~~~~~~~~~~~~~~~e~~~h~~~~~ 585 (590)
||++|+++||+++.+||+++++|+++|+.+|.++|.||++|+++||
T Consensus 458 iqh~cqdiGa~sL~~l~~~~~~~~vrfe~rt~~Aq~Eggvh~l~Sy 503 (503)
T KOG2550|consen 458 IQHSCQDIGARSLKELREMMYSGEVRFEKRTMSAQIEGGVHGLHSY 503 (503)
T ss_pred HhhhhhhhhHHHHHHHHHHhhcceEEEEeccccceeccCccCCCCC
Confidence 9999999999999999999999999999999999999999999998
|
|
| >PLN02274 inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-87 Score=722.72 Aligned_cols=472 Identities=51% Similarity=0.798 Sum_probs=436.8
Q ss_pred EeccccccccCCCCCCC-CccCCcccccccccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHH
Q psy1056 69 VTSRDVDFLENSANMDL-KIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQ 147 (590)
Q Consensus 69 vT~~Did~l~~~~~~~~-~~~~~~~~~l~~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~ 147 (590)
+||+ |+++.|+++++ ++++++.+++++.+.++.|+++++|+++++..++++++..||+|++|.+.+
T Consensus 22 ltfd--dv~l~p~~~~~~~~~~~~~t~lt~~~~~~~Pivsa~M~~vt~~~lA~Ama~aGGiGfI~~~as----------- 88 (505)
T PLN02274 22 YTYD--DVIFHPGYIDFPADAVDLSTRLSRNIPLSIPCVSSPMDTVTESDMAIAMAALGGIGIVHYNNT----------- 88 (505)
T ss_pred CCcc--ceEecccccCcCCcccccccccccccCcCCCEeccCCcccchHHHHHHHHhCCCeEEEcCCCC-----------
Confidence 9999 99999999999 899999999999999999999999999999999999999999999998876
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHhhhcCCCcccccccccc--hHHHHHHHHHhccccccccccccCceeeEEeeCCCCC
Q psy1056 148 AGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVT--TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLG 225 (590)
Q Consensus 148 ~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~im~~~~~~--~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~ 225 (590)
.+.+...+++++. +... ++..+++. ++++.++++.| .+++++.+||+|++..+
T Consensus 89 --------------~E~q~~~Irkvk~-~~~g-mi~dpvtV~pd~tV~dA~~lm---------~~~~~~~lpVvD~~~~~ 143 (505)
T PLN02274 89 --------------AEEQAAIVRKAKS-RRVG-FVSDPVVKSPSSTISSLDELK---------ASRGFSSVCVTETGTMG 143 (505)
T ss_pred --------------HHHHHHHHHHhhc-cccc-ccCCCeeeCCCCcHHHHHHHH---------HhcCCceEEEEeCCCcC
Confidence 7778888888886 6555 55555555 89999999999 99999999999862223
Q ss_pred CeEEEEEecchhhccccccccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccc
Q psy1056 226 EKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKS 305 (590)
Q Consensus 226 ~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~ 305 (590)
++++|+||.+|+++... .+.+|+++|++..+++++++++++.+|+++|.+++.+.+||+|++++++|+||++|+++.
T Consensus 144 GklvGIVT~~DL~~v~~---~~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~ 220 (505)
T PLN02274 144 SKLLGYVTKRDWDFVND---RETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRV 220 (505)
T ss_pred CeEEEEEEHHHHhhccc---cCCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHH
Confidence 79999999999986542 358899999972238899999999999999999999999999999999999999999999
Q ss_pred cCCCCC---CcccCCceEEeEeeccchhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCc
Q psy1056 306 RDYPDS---SKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFG 382 (590)
Q Consensus 306 ~~~~~~---~~d~~~~l~v~a~i~~~~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~ 382 (590)
..++.+ .+|..++++++++++...+..++++.|+++|+|++.+|+++|+...+++.++++|+.||+.++|+|+|.|.
T Consensus 221 ~~~p~~~~~~~d~~~~l~vgaavg~~~~~~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t~ 300 (505)
T PLN02274 221 KGYPKLGKPSVGKDGKLLVGAAIGTRESDKERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVTM 300 (505)
T ss_pred hhCcCccccccCCCCCEEEEEEEcCCccHHHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCCCH
Confidence 999877 44789999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCCEEEE-----cccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEE
Q psy1056 383 YQPRATLLNFIYQIEM-----IKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTA 456 (590)
Q Consensus 383 ~~a~~l~~~Gvd~i~v-----~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v 456 (590)
++|+.|+++|||+|.| ++|+++. .++.|. +.+++..+++++...++|||++|||+++.|++|||++||++|
T Consensus 301 e~a~~a~~aGaD~i~vg~g~G~~~~t~~---~~~~g~~~~~~i~~~~~~~~~~~vpVIadGGI~~~~di~kAla~GA~~V 377 (505)
T PLN02274 301 YQAQNLIQAGVDGLRVGMGSGSICTTQE---VCAVGRGQATAVYKVASIAAQHGVPVIADGGISNSGHIVKALTLGASTV 377 (505)
T ss_pred HHHHHHHHcCcCEEEECCCCCccccCcc---ccccCCCcccHHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEE
Confidence 9999999999999988 5677776 677788 888888888888777899999999999999999999999999
Q ss_pred EECccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecccceeEEeeCCchhchHHHH
Q psy1056 457 MMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYL 536 (590)
Q Consensus 457 ~~g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~~~~~~~~ 536 (590)
|+|++|++|+|||+++++++|++||.||||||++||.+ |+.+|||++..++++|||||+.+||||++.++|++|
T Consensus 378 ~vGs~~~~t~Esp~~~~~~~g~~~k~yrgmgs~~a~~~------~~~~ry~~~~~~~~v~egv~~~v~~~g~~~~~~~~~ 451 (505)
T PLN02274 378 MMGSFLAGTTEAPGEYFYQDGVRVKKYRGMGSLEAMTK------GSDQRYLGDTAKLKIAQGVSGAVADKGSVLKFVPYT 451 (505)
T ss_pred EEchhhcccccCCcceeeeCCeEEEEEeccchHHHHhc------cccccccccCcccccCCceEEecccCCCHHHHHHHH
Confidence 99999999999999999999999999999999999974 688999998777899999999999999999999999
Q ss_pred HhhhhhhCcccCcCcHHHHHHhhccCceEEEEEecCccccCCCCcccccccccC
Q psy1056 537 QCGLKHGCQDIGAKSLSNLRAMMYSGELKFEKRTLCAQNEGSVHGLYSYEKRLF 590 (590)
Q Consensus 537 ~~~l~~~m~~~G~~~i~~l~~~~~~~~~~~~~~~~~~~~e~~~h~~~~~~~~~~ 590 (590)
.++||++|+|+||+||+|||+++|+|+++|+++|++|++||||||+++|+|++|
T Consensus 452 ~~g~~~~~~y~g~~~~~~~~~~~~~~~~~f~~~t~~~~~e~~~h~~~~~~~~~~ 505 (505)
T PLN02274 452 MQAVKQGFQDLGASSLQSAHELLRSGTLRLEVRTGAAQVEGGVHGLVSYEKKAF 505 (505)
T ss_pred HHHHHHhhhhcCcchHHHHHhhcccCceEEEEEchhhHhccCCCcceeccccCC
Confidence 999999999999999999999999999999999999999999999999999998
|
|
| >PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-87 Score=722.02 Aligned_cols=469 Identities=49% Similarity=0.772 Sum_probs=438.6
Q ss_pred EeccccccccCCCCCCC-CccCCcccccccccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHH
Q psy1056 69 VTSRDVDFLENSANMDL-KIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQ 147 (590)
Q Consensus 69 vT~~Did~l~~~~~~~~-~~~~~~~~~l~~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~ 147 (590)
+||+ |+++.|+++++ |+++++++.+++.+.++.|+++++|+++++..|+++|++.||+|++|+|++
T Consensus 18 lt~d--dv~l~p~~~~~~~~~v~~~t~l~~~~~l~~Pii~a~M~~vt~~~ma~a~a~~GglGvi~~~~~----------- 84 (495)
T PTZ00314 18 LTYD--DVILLPGYIDFSRDDVDLSTRLTRNIRLKIPIVSSPMDTVTEHKMAIAMALMGGIGVIHNNCS----------- 84 (495)
T ss_pred CCcc--ceEecccccccccccccccccccCCcccCCceeecCccccccHHHHHHHHHCCCeEEecCCCC-----------
Confidence 9999 99999999999 999999999999999999999999999999999999999999999999988
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHhhhcCCCcccccccccc--hHHHHHHHHHhccccccccccccCceeeEEeeCCCCC
Q psy1056 148 AGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVT--TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLG 225 (590)
Q Consensus 148 ~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~im~~~~~~--~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~ 225 (590)
.+.+.++++++|+ ++.. ++..+++. ++++.++++.| .+++++.+||++++..+
T Consensus 85 --------------~e~~~~~v~kvk~-~e~g-~i~dpvtv~pd~tv~eA~~lm---------~~~~~s~vpVvd~~~~~ 139 (495)
T PTZ00314 85 --------------IEEQVEEVRKVKR-FENG-FIMDPYVLSPNHTVADVLEIK---------EKKGFSSILITVDGKVG 139 (495)
T ss_pred --------------HHHHHHHHhhccc-cccc-cccCCeecCCCCCHHHHHHHH---------HHcCCcEEEEEeCCccC
Confidence 8889999999997 6654 34444444 88999999999 99999999999872223
Q ss_pred CeEEEEEecchhhccccccccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccc
Q psy1056 226 EKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKS 305 (590)
Q Consensus 226 ~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~ 305 (590)
++++||||.+|+++... ...+|+++|++.++++++++++++.+|+++|.+++++.+||+|++++++|+||++|+++.
T Consensus 140 gkLvGIVt~~DL~~~~~---~~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~ 216 (495)
T PTZ00314 140 GKLLGIVTSRDIDFVKD---KSTPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKN 216 (495)
T ss_pred CeEEEEEEHHHHhhccc---CCCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhc
Confidence 79999999999986543 247899999865578999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcccCCceEEeEeeccchhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHH
Q psy1056 306 RDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQP 385 (590)
Q Consensus 306 ~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a 385 (590)
..++.+.+|..+++++++.++...+..+++..++++|++++++|.++|++.+.++.++++++.+|++++++|+|.|.++|
T Consensus 217 ~~~p~a~~D~~GrL~Vgaavg~~~~~~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a 296 (495)
T PTZ00314 217 RGYPNASLDSNGQLLVGAAISTRPEDIERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIAGNVVTADQA 296 (495)
T ss_pred ccCchhhhccCCCEEEEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEECCcCCHHHH
Confidence 99999888999999999999988888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCEEEE-----cccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEEC
Q psy1056 386 RATLLNFIYQIEM-----IKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMG 459 (590)
Q Consensus 386 ~~l~~~Gvd~i~v-----~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g 459 (590)
+.|+++|||+|+| ++|+++. +.+||+ +.+++.++++++.+.++|+|+||||+|+.|++|||++||++||+|
T Consensus 297 ~~~~~aGad~I~vg~g~Gs~~~t~~---~~~~g~p~~~ai~~~~~~~~~~~v~vIadGGi~~~~di~kAla~GA~~Vm~G 373 (495)
T PTZ00314 297 KNLIDAGADGLRIGMGSGSICITQE---VCAVGRPQASAVYHVARYARERGVPCIADGGIKNSGDICKALALGADCVMLG 373 (495)
T ss_pred HHHHHcCCCEEEECCcCCcccccch---hccCCCChHHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHcCCCEEEEC
Confidence 9999999999998 6788888 899999 999999999998888999999999999999999999999999999
Q ss_pred ccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecccceeEEeeCCchhchHHHHHhh
Q psy1056 460 SLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCG 539 (590)
Q Consensus 460 ~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~~~~~~~~~~~ 539 (590)
++|++|+|||+++++++|++||.||||||.+||.+ +|+.+|||++..+.++|||||+.+||||++.++|+++.++
T Consensus 374 ~~~a~~~e~~~~~~~~~g~~~k~yrGm~s~~a~~~-----~~~~~~y~~~~~~~~~~egv~~~v~~~g~~~~~~~~~~~g 448 (495)
T PTZ00314 374 SLLAGTEEAPGEYFFKDGVRLKVYRGMGSLEAMLS-----KESGERYLDENETIKVAQGVSGSVVDKGSVAKLIPYLVKG 448 (495)
T ss_pred chhccccccCCceeeeCCeEEEEEeccchHHHhhc-----ccccccccccccccccCCceEEeeecCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999985 4788999997777889999999999999999999999999
Q ss_pred hhhhCcccCcCcHHHHHHhhccCceEEEEEecCccccCCCCcccccc
Q psy1056 540 LKHGCQDIGAKSLSNLRAMMYSGELKFEKRTLCAQNEGSVHGLYSYE 586 (590)
Q Consensus 540 l~~~m~~~G~~~i~~l~~~~~~~~~~~~~~~~~~~~e~~~h~~~~~~ 586 (590)
||++|+|+|+.||+|||+.+|+|+++|+++|++|++||||||+++|+
T Consensus 449 l~~~~~y~g~~~i~~~~~~~~~~~~~f~~~t~~~~~e~~~h~~~~~~ 495 (495)
T PTZ00314 449 VKHGMQYIGAHSIPELHEKLYSGQVRFERRSGSAIKEGGVHSLHKFE 495 (495)
T ss_pred HHHHHHhhCCCcHHHHHhhcccCceEEEEEChhHHhccCCCccccCC
Confidence 99999999999999999999999999999999999999999999996
|
|
| >TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-83 Score=690.08 Aligned_cols=447 Identities=25% Similarity=0.325 Sum_probs=414.1
Q ss_pred EeccccccccCCCCCCC-C-ccCCcccccccccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHH
Q psy1056 69 VTSRDVDFLENSANMDL-K-IEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLS 146 (590)
Q Consensus 69 vT~~Did~l~~~~~~~~-~-~~~~~~~~l~~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~ 146 (590)
+||+ |+++.|+++++ | +++++++.++. .++.|+++++||||++..|+++|+++||+|++|+|++
T Consensus 12 ltfd--dvll~p~~~~~~~~~~v~~~t~~~~--~l~~P~vsa~mdtvTe~~MAi~~A~~GGigvIh~n~~---------- 77 (475)
T TIGR01303 12 LTYN--DVFMVPSRSEVGSRFDVDLSTADGT--GTTIPLVVANMTAVAGRRMAETVARRGGIVILPQDLP---------- 77 (475)
T ss_pred CCcc--ceEEccCccCccCCCceeecccccC--ccccceeeccchhhHHHHHHHHHHHCCCEEEEeCCCC----------
Confidence 8999 99999999999 7 49999999874 6689999999999999999999999999999999998
Q ss_pred HcCCcEEEEcCCCCchHHHHHHHHHhhhcCCCcccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCC
Q psy1056 147 QAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGK 223 (590)
Q Consensus 147 ~~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~ 223 (590)
.+.|.+.++.++. . ++|..++.+ ++++.++++.| .+++++.+||+|+
T Consensus 78 ---------------i~~qae~v~~VKv-~---eim~~~pvtv~p~~tI~eA~~lm---------~~~~~~~~vVvD~-- 127 (475)
T TIGR01303 78 ---------------IPAVKQTVAFVKS-R---DLVLDTPITLAPHDTVSDAMALI---------HKRAHGAAVVILE-- 127 (475)
T ss_pred ---------------HHHHHHHHhhcch-h---hccccCCeEECCCCCHHHHHHHH---------HhcCCeEEEEEEC--
Confidence 8888888888876 3 245555444 88999999999 9999999999986
Q ss_pred CCCeEEEEEecchhhccccccccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccc
Q psy1056 224 LGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLK 303 (590)
Q Consensus 224 ~~~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll 303 (590)
++++||||.+|+..... ..+++++|++ +++++++++++.+|+++|.+++++.+||+|++|+++|+||.+||+
T Consensus 128 --gklvGIVT~rDL~~~~~----~~~V~dIMt~--~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl 199 (475)
T TIGR01303 128 --DRPVGLVTDSDLLGVDR----FTQVRDIMST--DLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGAL 199 (475)
T ss_pred --CEEEEEEEHHHhhcCCC----CCCHHHHccC--CceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHH
Confidence 79999999999975432 3679999998 999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCcccCCceEEeEeeccchhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcH
Q psy1056 304 KSRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGY 383 (590)
Q Consensus 304 ~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~ 383 (590)
+...++ ...+..+++.+++.++...+..+++..|+++|++.+++|.++|++..+++.++++++.||++|+|+||+.|++
T Consensus 200 ~~~~~~-~~~d~~grl~Vgaav~~~~~~~~ra~~Lv~aGVd~i~~D~a~g~~~~~~~~i~~i~~~~~~~~vi~g~~~t~~ 278 (475)
T TIGR01303 200 RATIYT-PATDAAGRLRIGAAVGINGDVGGKAKALLDAGVDVLVIDTAHGHQVKMISAIKAVRALDLGVPIVAGNVVSAE 278 (475)
T ss_pred HHHhCC-chhhhccCceehheeeeCccHHHHHHHHHHhCCCEEEEeCCCCCcHHHHHHHHHHHHHCCCCeEEEeccCCHH
Confidence 998887 4556677999999999888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCEEEE-----cccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEE
Q psy1056 384 QPRATLLNFIYQIEM-----IKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAM 457 (590)
Q Consensus 384 ~a~~l~~~Gvd~i~v-----~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~ 457 (590)
+++.|+++|||+|+| ++|++|. +++||+ |.+++.++++++...++||||||||++++|++|||++||++||
T Consensus 279 ~~~~l~~~G~d~i~vg~g~Gs~~ttr~---~~~~g~~~~~a~~~~~~~~~~~~~~viadGgi~~~~di~kala~GA~~vm 355 (475)
T TIGR01303 279 GVRDLLEAGANIIKVGVGPGAMCTTRM---MTGVGRPQFSAVLECAAEARKLGGHVWADGGVRHPRDVALALAAGASNVM 355 (475)
T ss_pred HHHHHHHhCCCEEEECCcCCccccCcc---ccCCCCchHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCCCEEe
Confidence 999999999999999 8899998 999999 9999999998887778999999999999999999999999999
Q ss_pred ECccccCCCCCCCceEe-ecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeeccccee----EEeeCCchhch
Q psy1056 458 MGSLLAGTSEAPGEYFF-SDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSG----AIVDKGSVLRF 532 (590)
Q Consensus 458 ~g~~l~~~~es~~~~~~-~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~eg~~~----~~~~~~~~~~~ 532 (590)
+|++|++|+||||++++ ++|++||.||||||++||.. +|+.+|||++..++++|||+|+ .+||||++.++
T Consensus 356 ~g~~~ag~~espg~~~~~~~g~~~k~yrGmgs~~a~~~-----~~~~~ry~~~~~~~~v~eGv~~~~~~~~~~~g~~~~~ 430 (475)
T TIGR01303 356 VGSWFAGTYESPGDLMRDRDGRPYKESFGMASKRAVVA-----RTGADNAFDRARKALFEEGISTSRMGLDPDRGGVEDL 430 (475)
T ss_pred echhhcccccCCCceEEeECCEEEEEEecccCHHHHhh-----ccccchhhhhhccccccCceecccccccCCCCCHHHH
Confidence 99999999999999998 99999999999999999985 3678999997667889999998 45779999999
Q ss_pred HHHHHhhhhhhCcccCcCcHHHHHHhhccCceEEEEEecCccccCCCCc
Q psy1056 533 LPYLQCGLKHGCQDIGAKSLSNLRAMMYSGELKFEKRTLCAQNEGSVHG 581 (590)
Q Consensus 533 ~~~~~~~l~~~m~~~G~~~i~~l~~~~~~~~~~~~~~~~~~~~e~~~h~ 581 (590)
|.++.++||++|+|+|++||+|||++ ++|+++|++|++|||||.
T Consensus 431 i~~~~~gl~s~~~y~g~~~i~~~~~~-----~~~~~~t~~g~~e~~~~~ 474 (475)
T TIGR01303 431 IDHIISGVRSSCTYAGASSLEEFHER-----AVVGVQSGAGYAEGKPLP 474 (475)
T ss_pred HHHHHHHHHHHhhhcCCCcHHHHHhC-----CEEEEEcccccccCCCCC
Confidence 99999999999999999999999999 999999999999999995
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302. |
| >PRK07107 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-83 Score=691.09 Aligned_cols=461 Identities=30% Similarity=0.411 Sum_probs=418.9
Q ss_pred EeccccccccCCCCCC--C-CccCCccccccc-------ccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcch
Q psy1056 69 VTSRDVDFLENSANMD--L-KIEKDLSSPLTK-------KITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREAD 138 (590)
Q Consensus 69 vT~~Did~l~~~~~~~--~-~~~~~~~~~l~~-------~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~ 138 (590)
+||+ |+++.|++++ + |+++++++++++ .+.++.|++|++|+++++++|+++|++.||++++|+|++
T Consensus 10 ~tfd--dvll~P~~~~~~~~~~~v~~~t~~~~~~~~~~~~i~l~iP~~SatmdtvtgdalAiala~~gG~g~Ih~n~s-- 85 (502)
T PRK07107 10 RTFS--EYLLVPGLSSKECVPANVSLKTPLVKFKKGEESAITLNIPLVSAIMQSVSDDNMAIALAREGGLSFIFGSQS-- 85 (502)
T ss_pred cccc--ceEEccCCCCCCcCccceeccccccccccCcccccccCCChHHHHHHHHhhHHHHHHHHHcCCCeEeeCCCC--
Confidence 8999 9999999996 4 889999999999 999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCchHHHHHHHHHhhhcCCCcccccccccc--hHHHHHHHHHhccccccccccccCceee
Q psy1056 139 KYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVT--TDQAKNLIDAGVDGLRVGSHGCHGFCGF 216 (590)
Q Consensus 139 ~~~~~~l~~~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~im~~~~~~--~~~~~~a~~~m~~~~~v~~~~~~~~~~~ 216 (590)
.+.|.+.+.++++ +... ++..++++ ++++.++++.| .+++++.+
T Consensus 86 -----------------------ie~qa~lV~kVk~-~~~g-~i~~~~tV~pd~tl~eAl~~m---------~~~~~~~v 131 (502)
T PRK07107 86 -----------------------IESEAAMVRRVKN-YKAG-FVVSDSNLTPDNTLADVLDLK---------EKTGHSTV 131 (502)
T ss_pred -----------------------HHHHHHHHHHHHH-HhcC-CcCCCCEeCCCCcHHHHHHHH---------HhcCCCeE
Confidence 7888888888887 5443 33333333 99999999999 99999999
Q ss_pred EEeeCCCCCCeEEEEEecchhhccccccccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEE
Q psy1056 217 PVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIAL 296 (590)
Q Consensus 217 pVvd~~~~~~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Gi 296 (590)
||+|++..+++++||||.+|+++... ..+.+|+++|++.++++++++++++.+|+++|.+++++.|||+|++|+++|+
T Consensus 132 pVVD~~~~~gkLvGIVT~~DLr~~~~--~~~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGI 209 (502)
T PRK07107 132 AVTEDGTAHGKLLGIVTSRDYRISRM--SLDTKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYL 209 (502)
T ss_pred EEEeCCCcCCEEEEEEEcHHhhcccc--CCCCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEE
Confidence 99996222479999999999985422 3467899999964478999999999999999999999999999999999999
Q ss_pred EeecccccccCCCCCCcccCCceEEeEeeccchhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCC-ceEE
Q psy1056 297 IARTDLKKSRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPD-MQVI 375 (590)
Q Consensus 297 it~~dll~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~-vpvi 375 (590)
||++|+++...++...+|..+++++++.++.. +..++++.|+++|+|+++|++++|++...++.++++++.||+ ++|+
T Consensus 210 IT~~Dilk~~~~P~a~~d~~grL~V~~av~~~-~~~~ra~~Lv~aGvd~i~vd~a~g~~~~~~~~i~~ir~~~~~~~~V~ 288 (502)
T PRK07107 210 VFRKDYDSHKENPLELLDSSKRYVVGAGINTR-DYAERVPALVEAGADVLCIDSSEGYSEWQKRTLDWIREKYGDSVKVG 288 (502)
T ss_pred EEhHHHHhcccChhhhhhhccCeeeeeccChh-hHHHHHHHHHHhCCCeEeecCcccccHHHHHHHHHHHHhCCCCceEE
Confidence 99999999999988888989999999999765 578899999999999999999999999999999999999984 8999
Q ss_pred eccccCcHHHHHHHHCCCCEEEE-----cccccccCCCcccccc-chhHHHHHHHHHhc----CC--CcEEecCCCCCHH
Q psy1056 376 GGNVLFGYQPRATLLNFIYQIEM-----IKFIKKEYPDMQVIGR-NGTAVYRVAEYASR----RG--VPVIADGGVQSVG 443 (590)
Q Consensus 376 ~g~v~s~~~a~~l~~~Gvd~i~v-----~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~----~~--v~iia~GGi~~~~ 443 (590)
+|||.|+++|+.|+++|||+|+| ++|+||. .+|.|+ +.+++.+|++++.+ .+ +|||+||||++++
T Consensus 289 aGnV~t~e~a~~li~aGAd~I~vg~g~Gs~c~tr~---~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~g 365 (502)
T PRK07107 289 AGNVVDREGFRYLAEAGADFVKVGIGGGSICITRE---QKGIGRGQATALIEVAKARDEYFEETGVYIPICSDGGIVYDY 365 (502)
T ss_pred eccccCHHHHHHHHHcCCCEEEECCCCCcCccccc---ccCCCccHHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchh
Confidence 99999999999999999999999 8999998 899999 99999999987643 24 9999999999999
Q ss_pred HHHHHHHcCCCEEEECccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhc-cccceeecccceeE
Q psy1056 444 HVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHN-EMDKLKVAQGVSGA 522 (590)
Q Consensus 444 di~kalalGA~~v~~g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~-~~~~~~~~eg~~~~ 522 (590)
||+||||+|||+||+|++|++|+||||++++++|++||.||||||.+||. .+||+. +..+.+++||+|+.
T Consensus 366 di~KAla~GA~~vm~G~~~ag~~espg~~~~~~g~~~k~yrgm~s~~a~~---------~~ry~~~~~~~~~~~egv~~~ 436 (502)
T PRK07107 366 HMTLALAMGADFIMLGRYFARFDESPTNKVNINGNYMKEYWGEGSNRARN---------WQRYDLGGDKKLSFEEGVDSY 436 (502)
T ss_pred HHHHHHHcCCCeeeeChhhhccccCCCcEEEECCEEEEEeecccCHhhhh---------ccccccccccccccCCccEEE
Confidence 99999999999999999999999999999999999999999999999984 257774 33356899999999
Q ss_pred EeeCCchhchHHHHHhhhhhhCcccCcCcHHHHHHhhccCceEEEEEecCccccCCCCccccccc
Q psy1056 523 IVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRAMMYSGELKFEKRTLCAQNEGSVHGLYSYEK 587 (590)
Q Consensus 523 ~~~~~~~~~~~~~~~~~l~~~m~~~G~~~i~~l~~~~~~~~~~~~~~~~~~~~e~~~h~~~~~~~ 587 (590)
+||+|++.++|+++.++||++|+|+|+.||+|||++ ++|+++|++|++||||||+++||+
T Consensus 437 v~~~g~~~~~~~~~~~glrs~~~y~g~~~i~~l~~~-----~~f~~~t~~~~~e~~~h~~~~~~~ 496 (502)
T PRK07107 437 VPYAGSLKDNVAITLSKVRSTMCNCGALSIPELQQK-----AKITLVSSTSIVEGGAHDVILKDK 496 (502)
T ss_pred ecCCCCHHHHHHHHHHHHHHhhhccCCCcHHHHHhC-----CeEEEECcchhhccCCCcceeecC
Confidence 999999999999999999999999999999999998 899999999999999999999876
|
|
| >PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-79 Score=663.24 Aligned_cols=455 Identities=36% Similarity=0.539 Sum_probs=421.4
Q ss_pred EeccccccccCCCCCCC-CccCCcccccccccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHH
Q psy1056 69 VTSRDVDFLENSANMDL-KIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQ 147 (590)
Q Consensus 69 vT~~Did~l~~~~~~~~-~~~~~~~~~l~~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~ 147 (590)
+||+ |+++.|+++++ ++++++.+.+++.+.++.|+++++|++++++.|+.+++..||+|++|.+.+
T Consensus 9 ~t~d--dv~l~p~~~~~~~~~~~~~t~l~~~~~~~~Piv~a~m~~vT~~ela~ava~~GglG~i~~~~~----------- 75 (486)
T PRK05567 9 LTFD--DVLLVPAHSEVLPNDVDLSTQLTKNIRLNIPLLSAAMDTVTEARMAIAMAREGGIGVIHKNMS----------- 75 (486)
T ss_pred cCcc--ceEecccccCcCcccccccchhhhhcCcCcCEEeCCCCCcCHHHHHHHHHhCCCCCEecCCCC-----------
Confidence 8999 99999999999 889999999999999999999999999999999999999999999998877
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHhhhcCCCcccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCC
Q psy1056 148 AGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKL 224 (590)
Q Consensus 148 ~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~ 224 (590)
.+.+.+.++++|. +.+ +|..++.+ ++++.++++.| .+++++++||+++
T Consensus 76 --------------~e~~~~~I~~vk~-~~d--im~~~~v~i~~~~tv~ea~~~m---------~~~~~~~lpVvd~--- 126 (486)
T PRK05567 76 --------------IEEQAEEVRKVKR-SES--GVVTDPVTVTPDTTLAEALALM---------ARYGISGVPVVDE--- 126 (486)
T ss_pred --------------HHHHHHHHHHhhh-hhh--cccCCCeEeCCCCCHHHHHHHH---------HHhCCCEEEEEcc---
Confidence 6667777787776 443 56555555 88999999999 9999999999998
Q ss_pred CCeEEEEEecchhhccccccccccchhhccc-cCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccc
Q psy1056 225 GEKLLGIVTSRDVDFLENSANMDLKIEKVMT-NVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLK 303 (590)
Q Consensus 225 ~~~lvGivt~~Dl~~~~~~~~~~~~V~~im~-~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll 303 (590)
+++++|+||.+|+.+... ...++.++|+ + +++++++++++.++++.|.+++++.+||+|++|+++|+||.+||+
T Consensus 127 ~g~lvGiVt~~DL~~~~~---~~~~V~dim~~~--~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl 201 (486)
T PRK05567 127 NGKLVGIITNRDVRFETD---LSQPVSEVMTKE--RLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIE 201 (486)
T ss_pred CCEEEEEEEHHHhhhccc---CCCcHHHHcCCC--CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhh
Confidence 799999999999975432 2468999998 6 899999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCcccCCceEEeEeeccchhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcH
Q psy1056 304 KSRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGY 383 (590)
Q Consensus 304 ~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~ 383 (590)
+...++....+..+++.++++++...+..+.++.|+++|+++++++.++|+..++++.++++++++|++|+++|+|.|.+
T Consensus 202 ~~~~~p~a~~d~~g~l~V~aai~~~~~~~e~a~~L~~agvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~g~v~t~e 281 (486)
T PRK05567 202 KAEEFPNACKDEQGRLRVGAAVGVGADNEERAEALVEAGVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIAGNVATAE 281 (486)
T ss_pred hhhhCCCcccccCCCEEEEeecccCcchHHHHHHHHHhCCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEEeccCCHH
Confidence 99888776667788999999999777788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCEEEE-----cccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEE
Q psy1056 384 QPRATLLNFIYQIEM-----IKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAM 457 (590)
Q Consensus 384 ~a~~l~~~Gvd~i~v-----~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~ 457 (590)
+|+.|+++|+|+|+| ++|++|. +++||+ +++++.++++++...++|||+||||++|.|++|||++|||+||
T Consensus 282 ~a~~l~~aGad~i~vg~g~gs~~~~r~---~~~~g~p~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla~GA~~v~ 358 (486)
T PRK05567 282 AARALIEAGADAVKVGIGPGSICTTRI---VAGVGVPQITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAAGASAVM 358 (486)
T ss_pred HHHHHHHcCCCEEEECCCCCcccccee---ecCCCcCHHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHHhCCCEEE
Confidence 999999999999999 8999999 999999 9999999998887678999999999999999999999999999
Q ss_pred ECccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhc--cccceeecccceeEEeeCCchhchHHH
Q psy1056 458 MGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHN--EMDKLKVAQGVSGAIVDKGSVLRFLPY 535 (590)
Q Consensus 458 ~g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~--~~~~~~~~eg~~~~~~~~~~~~~~~~~ 535 (590)
+|++|++++||||++++.+|++||.||||||.+||.. |+.+|||+ +....++|||+|+.+||+|++.++|.+
T Consensus 359 ~G~~~a~~~e~pg~~~~~~g~~~k~y~gm~s~~a~~~------~~~~r~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~ 432 (486)
T PRK05567 359 LGSMLAGTEEAPGEVELYQGRSYKSYRGMGSLGAMSK------GSSDRYFQSVNAADKLVPEGIEGRVPYKGPLSEIIHQ 432 (486)
T ss_pred ECccccccccCCCceEEECCEEEEEEeccchHHHHhc------ccccccccccccccccCCCceEEeCCCCCCHHHHHHH
Confidence 9999999999999999999999999999999999974 68899998 344578999999999999999999999
Q ss_pred HHhhhhhhCcccCcCcHHHHHHhhccCceEEEEEecCccccCCCCcccc
Q psy1056 536 LQCGLKHGCQDIGAKSLSNLRAMMYSGELKFEKRTLCAQNEGSVHGLYS 584 (590)
Q Consensus 536 ~~~~l~~~m~~~G~~~i~~l~~~~~~~~~~~~~~~~~~~~e~~~h~~~~ 584 (590)
+.++||++|+|+|+.||+|||++ ++|+++|++|++||||||+..
T Consensus 433 ~~~g~~~~~~~~g~~~~~~~~~~-----~~~~~~t~~~~~e~~~h~~~~ 476 (486)
T PRK05567 433 LMGGLRSGMGYTGAATIEELREK-----AEFVRITGAGLRESHVHDVQI 476 (486)
T ss_pred HHHHHHHHHHhcCcCcHHHHHhc-----CeEEEEChhhHhhcCCcccee
Confidence 99999999999999999999998 999999999999999999864
|
|
| >PRK07807 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-78 Score=652.02 Aligned_cols=450 Identities=24% Similarity=0.333 Sum_probs=414.9
Q ss_pred EeccccccccCCCCCCC-C-ccCCcccccccccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHH
Q psy1056 69 VTSRDVDFLENSANMDL-K-IEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLS 146 (590)
Q Consensus 69 vT~~Did~l~~~~~~~~-~-~~~~~~~~l~~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~ 146 (590)
+||+ |+++.|+++++ + +++++++.+ .+.++.|+++++|||+++..|++.+++.||+|++|.|.+
T Consensus 13 ltfd--dvll~p~~~~~~~~~~v~~~t~~--~~~l~~Pi~sa~Mdtvt~~~MAiaLAr~GGiGvih~nl~---------- 78 (479)
T PRK07807 13 LTYD--DVFLVPSRSDVGSRFDVDLSTAD--GTGTTIPLVVANMTAVAGRRMAETVARRGGLVVLPQDIP---------- 78 (479)
T ss_pred cCcc--ceEecccccCccCCCceecccCC--CCccccceeecCCcchhHHHHHHHHHHCCCceEeeCCCC----------
Confidence 9999 99999999999 7 489998875 567899999999999999999999999999999999988
Q ss_pred HcCCcEEEEcCCCCchHHHHHHHHHhhhcCCCcccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCC
Q psy1056 147 QAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGK 223 (590)
Q Consensus 147 ~~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~ 223 (590)
.+.+.+.++.++. . ++|..++.+ ++++.++++.| .+++++.+||+|+
T Consensus 79 ---------------~~~q~~~l~~VKv-~---~iMi~~pvtv~~d~tv~eA~~~m---------~~~~~s~l~VVD~-- 128 (479)
T PRK07807 79 ---------------IDVVAEVVAWVKS-R---DLVFDTPVTLSPDDTVGDALALL---------PKRAHGAVVVVDE-- 128 (479)
T ss_pred ---------------HHHHHHHHhhccc-c---cccccCCeEECCCCCHHHHHHHH---------HhcCCceEEEECC--
Confidence 7777888887775 2 366665555 88999999999 9999999999998
Q ss_pred CCCeEEEEEecchhhccccccccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccc
Q psy1056 224 LGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLK 303 (590)
Q Consensus 224 ~~~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll 303 (590)
+++++|+||.+|+..... ..+++++|++ +++++++++++.+|+++|.+++++.+||+|++|+++|+||++||+
T Consensus 129 -~gklvGIVT~rDL~~~~~----~~~V~diMt~--~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl 201 (479)
T PRK07807 129 -EGRPVGVVTEADCAGVDR----FTQVRDVMST--DLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGAL 201 (479)
T ss_pred -CCeEEEEEeHHHHhcCcc----CCCHHHhccC--CceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHH
Confidence 789999999999975432 3679999998 999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCcccCCceEEeEeeccchhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcH
Q psy1056 304 KSRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGY 383 (590)
Q Consensus 304 ~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~ 383 (590)
+...++ ...+..+++.+++.++...+..+.+..|+++|++++++|.++|+...+.+.++++|++||++++|+|||.|.+
T Consensus 202 ~~~~~~-~~~~~~g~l~V~aav~~~~~~~~~a~~Lv~aGvd~i~~D~a~~~~~~~~~~i~~ik~~~p~~~v~agnv~t~~ 280 (479)
T PRK07807 202 RATIYT-PAVDAAGRLRVAAAVGINGDVAAKARALLEAGVDVLVVDTAHGHQEKMLEALRAVRALDPGVPIVAGNVVTAE 280 (479)
T ss_pred HHhhCC-chhhhhhccchHhhhccChhHHHHHHHHHHhCCCEEEEeccCCccHHHHHHHHHHHHHCCCCeEEeeccCCHH
Confidence 998887 4456667888888888888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCEEEE-----cccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEE
Q psy1056 384 QPRATLLNFIYQIEM-----IKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAM 457 (590)
Q Consensus 384 ~a~~l~~~Gvd~i~v-----~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~ 457 (590)
.|+.|+++|||+|.| |+|+++. ++|.|. +.+++.++++++...++|+||+|||++++|++|||++||++||
T Consensus 281 ~a~~l~~aGad~v~vgig~gsictt~~---~~~~~~p~~~av~~~~~~~~~~~~~via~ggi~~~~~~~~al~~ga~~v~ 357 (479)
T PRK07807 281 GTRDLVEAGADIVKVGVGPGAMCTTRM---MTGVGRPQFSAVLECAAAARELGAHVWADGGVRHPRDVALALAAGASNVM 357 (479)
T ss_pred HHHHHHHcCCCEEEECccCCccccccc---ccCCchhHHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHcCCCeee
Confidence 999999999999998 9999999 999999 9999999999888788999999999999999999999999999
Q ss_pred ECccccCCCCCCCceEe-ecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecccceeEE----eeCCchhch
Q psy1056 458 MGSLLAGTSEAPGEYFF-SDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAI----VDKGSVLRF 532 (590)
Q Consensus 458 ~g~~l~~~~es~~~~~~-~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~eg~~~~~----~~~~~~~~~ 532 (590)
+|++|++|+||||++++ ++|+.||.||||||++||.+ +++.++||++..+.+++||+++.+ ||+|++.++
T Consensus 358 ~g~~~ag~~Espg~~~~~~~g~~~k~yrgmgs~~a~~~-----~~~~~~~~~~~~~~~~~eGv~~~~~~~~~~~g~~~~~ 432 (479)
T PRK07807 358 IGSWFAGTYESPGDLMRDRDGRPYKESFGMASARAVAA-----RTAGDSAFDRARKALFEEGISTSRMYLDPGRPGVEDL 432 (479)
T ss_pred ccHhhccCccCCCceEeccCCeEEEEeeccccHHHHhc-----ccCccchhhhcccCCCCCCccceeeeccCCCCCHHHH
Confidence 99999999999999998 99999999999999999985 346679998766778999999975 669999999
Q ss_pred HHHHHhhhhhhCcccCcCcHHHHHHhhccCceEEEEEecCccccCCCCccc
Q psy1056 533 LPYLQCGLKHGCQDIGAKSLSNLRAMMYSGELKFEKRTLCAQNEGSVHGLY 583 (590)
Q Consensus 533 ~~~~~~~l~~~m~~~G~~~i~~l~~~~~~~~~~~~~~~~~~~~e~~~h~~~ 583 (590)
|++|.++||++|+|+|++||+|||++ ++|+++|++|++|||||.+.
T Consensus 433 ~~~l~~glr~~~~y~g~~~i~~~~~~-----~~~~~~t~~g~~e~~~h~~~ 478 (479)
T PRK07807 433 LDHITSGVRSSCTYAGARTLAEFHER-----AVVGVQSAAGYAEGRPLPTS 478 (479)
T ss_pred HHHHHHHHHHHHhhcCcCcHHHHHhC-----CEEEEECccccccCCCCCCC
Confidence 99999999999999999999999999 99999999999999999864
|
|
| >TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-77 Score=645.06 Aligned_cols=433 Identities=45% Similarity=0.679 Sum_probs=403.6
Q ss_pred EeccccccccCCCCCCC-CccCCcccccccccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHH
Q psy1056 69 VTSRDVDFLENSANMDL-KIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQ 147 (590)
Q Consensus 69 vT~~Did~l~~~~~~~~-~~~~~~~~~l~~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~ 147 (590)
+||+ |+++.|+++++ |+++++++++++++.++.|+++++|++++++.|++.++..|++|++|+|++
T Consensus 2 ~t~d--dv~l~p~~~~~~~~~~~~~~~~~~~~~l~~p~~s~~mdtvTe~ema~~ma~~gg~GvI~~n~~----------- 68 (450)
T TIGR01302 2 LTFD--DVLLLPGFIDVEPDDVDLSTRITRNIKLNIPILSSPMDTVTESRMAIAMAREGGIGVIHRNMS----------- 68 (450)
T ss_pred CCcc--ceEecccccccCccccccccccccccCcCCCeeecCCCccCHHHHHHHHHhcCCCceeecCCC-----------
Confidence 7999 99999999999 899999999999999999999999999999999999999999999999988
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHhhhcCCCcccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCC
Q psy1056 148 AGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKL 224 (590)
Q Consensus 148 ~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~ 224 (590)
.+.+.++++++++ +.. .|..++.+ ++++.++++.| .+++++++||+++
T Consensus 69 --------------~e~q~~~V~~Vk~-~~~--~~~~~~vtl~~~~tv~eal~~m---------~~~~~s~lpVvd~--- 119 (450)
T TIGR01302 69 --------------IEEQAEQVKRVKR-AEN--GIISDPVTISPETTVADVLELM---------ERKGISGIPVVED--- 119 (450)
T ss_pred --------------HHHHHHHHhhhcc-ccC--ceecCceEeCCCCCHHHHHHHH---------HHcCCCEEEEEeC---
Confidence 7888888898887 554 45444444 88999999999 9999999999998
Q ss_pred C---CeEEEEEecchhhccccccccccchhhccc-cCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeec
Q psy1056 225 G---EKLLGIVTSRDVDFLENSANMDLKIEKVMT-NVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIART 300 (590)
Q Consensus 225 ~---~~lvGivt~~Dl~~~~~~~~~~~~V~~im~-~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~ 300 (590)
+ ++++|+||.+|+.+... ...+++++|+ + +++++++++++.++++.|.+++.+.+||+|++|+++|+||.+
T Consensus 120 ~~~~~~lvGIVt~rDL~~~~~---~~~~V~dvm~~~--~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~ 194 (450)
T TIGR01302 120 GDMTGKLVGIITKRDIRFVKD---KGKPVSEVMTRE--EVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMK 194 (450)
T ss_pred CCCCCeEEEEEEHHHHhhhhc---CCCCHHHhhCCC--CCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhH
Confidence 5 69999999999985432 2478999999 5 899999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCcccCCceEEeEeeccchhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEecccc
Q psy1056 301 DLKKSRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVL 380 (590)
Q Consensus 301 dll~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~ 380 (590)
|+++...++...++..++++++++++.+.+..+++..++++|+++++||.+||++..+.+.++++++.||++|+++|+|.
T Consensus 195 DIl~~~~~~~~~~d~~g~l~V~aav~~~~~~~~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v~ 274 (450)
T TIGR01302 195 DIVKRRKFPHASKDENGRLIVGAAVGTREFDKERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVA 274 (450)
T ss_pred HhhhcccCCcceEeCCCCEEEEEEecCchhHHHHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeCC
Confidence 99999988777778889999999999988899999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHCCCCEEEE-----cccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCC
Q psy1056 381 FGYQPRATLLNFIYQIEM-----IKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGAS 454 (590)
Q Consensus 381 s~~~a~~l~~~Gvd~i~v-----~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~ 454 (590)
|.++|+.|+++|||+|+| ++|+++. +++||+ +++++.++++++...++||||||||+++.|++|||++||+
T Consensus 275 t~~~a~~l~~aGad~i~vg~g~G~~~~t~~---~~~~g~p~~~~i~~~~~~~~~~~vpviadGGi~~~~di~kAla~GA~ 351 (450)
T TIGR01302 275 TAEQAKALIDAGADGLRVGIGPGSICTTRI---VAGVGVPQITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAAGAD 351 (450)
T ss_pred CHHHHHHHHHhCCCEEEECCCCCcCCccce---ecCCCccHHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCC
Confidence 999999999999999998 6688898 999999 9999999999887778999999999999999999999999
Q ss_pred EEEECccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccc--cceeecccceeEEeeCCchhch
Q psy1056 455 TAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEM--DKLKVAQGVSGAIVDKGSVLRF 532 (590)
Q Consensus 455 ~v~~g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~--~~~~~~eg~~~~~~~~~~~~~~ 532 (590)
+||+|++|++|+||||++++++|++||.||||||++||.. |+.+|||++. .++++|||+|+.+||||+|.++
T Consensus 352 ~V~~G~~~a~~~e~pg~~~~~~g~~~k~yrgm~s~~a~~~------~~~~ry~~~~~~~~~~~~egv~~~~~~~g~~~~~ 425 (450)
T TIGR01302 352 AVMLGSLLAGTTESPGEYEIINGRRYKQYRGMGSLGAMTK------GSSDRYLQDENKTKKFVPEGVEGAVPYKGSVLEL 425 (450)
T ss_pred EEEECchhhcCCcCCCceEEECCEEEEEEeccchHHHHhc------cccccccccccccccccCCceEEcccccCcHHHH
Confidence 9999999999999999999999999999999999999974 7889999863 4678999999999999999999
Q ss_pred HHHHHhhhhhhCcccCcCcHHHHHH
Q psy1056 533 LPYLQCGLKHGCQDIGAKSLSNLRA 557 (590)
Q Consensus 533 ~~~~~~~l~~~m~~~G~~~i~~l~~ 557 (590)
|+++.++||++|+|+||.||+|||+
T Consensus 426 ~~~~~~g~~~~~~~~g~~~~~~~~~ 450 (450)
T TIGR01302 426 LPQLVGGLKSGMGYVGARSIDELRE 450 (450)
T ss_pred HHHHHHHHHHhhhccCcCcHHHHhC
Confidence 9999999999999999999999984
|
This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models. |
| >PRK06843 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-68 Score=551.11 Aligned_cols=384 Identities=32% Similarity=0.462 Sum_probs=343.1
Q ss_pred EeccccccccCCCCCCC-CccCCcccccccccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHH
Q psy1056 69 VTSRDVDFLENSANMDL-KIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQ 147 (590)
Q Consensus 69 vT~~Did~l~~~~~~~~-~~~~~~~~~l~~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~ 147 (590)
+|++ |+++.|+++++ |+++++.+++++.+.++.|+++++|+++++..+++++++.||+|++|.+.+
T Consensus 10 ltfd--Dvll~P~~s~~~~~~vdl~t~lt~~l~l~iPIvsApMd~Vt~~~lA~AvA~aGGlGvI~~~~~----------- 76 (404)
T PRK06843 10 LTFD--DVSLIPRKSSVLPSEVSLKTQLTKNISLNIPFLSSAMDTVTESQMAIAIAKEGGIGIIHKNMS----------- 76 (404)
T ss_pred cCcc--ceEEccCCCccCHHhccccchhhhccCCCCCEecCCCCCCCCHHHHHHHHHCCCEEEecCCCC-----------
Confidence 8999 99999999999 899999999999999999999999999999999999999999999998766
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHhhhcCCCcccccccccchHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCe
Q psy1056 148 AGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEK 227 (590)
Q Consensus 148 ~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~im~~~~~~~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~ 227 (590)
.+.+.++++++|+ +. ++ +
T Consensus 77 --------------~e~l~~eI~~vk~-~~---------------------------------~~--------~------ 94 (404)
T PRK06843 77 --------------IEAQRKEIEKVKT-YK---------------------------------FQ--------K------ 94 (404)
T ss_pred --------------HHHHHHHHHHHHh-hc---------------------------------CC--------C------
Confidence 6667777777776 21 10 0
Q ss_pred EEEEEecchhhccccccccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccC
Q psy1056 228 LLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRD 307 (590)
Q Consensus 228 lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~ 307 (590)
+|+|.+|+. .+++++|+. ++..++.++ .+|+.+...
T Consensus 95 --~i~~~~d~~---------~~~~~~~t~-------~~~~~~~~~--------------------------~~d~~~~~~ 130 (404)
T PRK06843 95 --TINTNGDTN---------EQKPEIFTA-------KQHLEKSDA--------------------------YKNAEHKED 130 (404)
T ss_pred --ceeeccccc---------ccchhheec-------cccchHHHH--------------------------Hhhhhhhhh
Confidence 355556652 346677763 233344443 377888888
Q ss_pred CCCCCcccCCceEEeEeeccchhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHH
Q psy1056 308 YPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRA 387 (590)
Q Consensus 308 ~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~ 387 (590)
++...+|..++++++++++...+..++++.++++|+|++++|+++|+...+.+.+++++++||++++++|+|.|.++|+.
T Consensus 131 ~~~a~~d~~~~l~v~aavg~~~~~~~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~ 210 (404)
T PRK06843 131 FPNACKDLNNKLRVGAAVSIDIDTIERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALD 210 (404)
T ss_pred cchhhhhhhcCeEEEEEEeCCHHHHHHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHH
Confidence 88888888999999999998888889999999999999999999999988999999999999999999999999999999
Q ss_pred HHHCCCCEEEE-----cccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcc
Q psy1056 388 TLLNFIYQIEM-----IKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSL 461 (590)
Q Consensus 388 l~~~Gvd~i~v-----~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~ 461 (590)
|+++|||+|.| ++|++|. .+++|. +.+++.++++.+...++||||+|||+++.|++|||++||++||+|++
T Consensus 211 l~~aGaD~I~vG~g~Gs~c~tr~---~~g~g~p~ltai~~v~~~~~~~~vpVIAdGGI~~~~Di~KALalGA~aVmvGs~ 287 (404)
T PRK06843 211 LISVGADCLKVGIGPGSICTTRI---VAGVGVPQITAICDVYEVCKNTNICIIADGGIRFSGDVVKAIAAGADSVMIGNL 287 (404)
T ss_pred HHHcCCCEEEECCCCCcCCccee---ecCCCCChHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEcce
Confidence 99999999998 6799998 899999 99999999988877789999999999999999999999999999999
Q ss_pred ccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhc-c--ccceeecccceeEEeeCCchhchHHHHHh
Q psy1056 462 LAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHN-E--MDKLKVAQGVSGAIVDKGSVLRFLPYLQC 538 (590)
Q Consensus 462 l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~-~--~~~~~~~eg~~~~~~~~~~~~~~~~~~~~ 538 (590)
|++|+||||++++++|++||.||||||++||.. |+.+|||+ + ..+.+++||+|+.|||+|++.++|.++.+
T Consensus 288 ~agt~Espg~~~~~~g~~~K~yrGmgS~~Am~~------~~~~ry~~~~~~~~~~~v~eGveg~v~~~G~v~~~~~~l~g 361 (404)
T PRK06843 288 FAGTKESPSEEIIYNGKKFKSYVGMGSISAMKR------GSKSRYFQLENNEPKKLVPEGIEGMVPYSGKLKDILTQLKG 361 (404)
T ss_pred eeeeecCCCcEEEECCEEEEEEeccchHHHHhc------cccccccccccccccccCCCccEEEecCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999974 68899998 3 34678999999999999999999999999
Q ss_pred hhhhhCcccCcCcHHHHHHhhccCceEEEEEecCccccCCCCccccc
Q psy1056 539 GLKHGCQDIGAKSLSNLRAMMYSGELKFEKRTLCAQNEGSVHGLYSY 585 (590)
Q Consensus 539 ~l~~~m~~~G~~~i~~l~~~~~~~~~~~~~~~~~~~~e~~~h~~~~~ 585 (590)
+|||+|+|+||+||+|||++ ++|+++|++|++||||||+.-+
T Consensus 362 glrs~m~y~Ga~~i~el~~~-----a~fv~~t~~~~~E~~~h~~~~~ 403 (404)
T PRK06843 362 GLMSGMGYLGAATISDLKIN-----SKFVKISHSSLKESHPHDVFNI 403 (404)
T ss_pred HHHHHhhccCCCcHHHHHhc-----CeEEEEchhhhhccCCCcccCC
Confidence 99999999999999999998 8999999999999999999754
|
|
| >PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-68 Score=541.79 Aligned_cols=341 Identities=43% Similarity=0.630 Sum_probs=301.4
Q ss_pred EeccccccccCCCCCCC-CccCCcc--cccccccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHH
Q psy1056 69 VTSRDVDFLENSANMDL-KIEKDLS--SPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLL 145 (590)
Q Consensus 69 vT~~Did~l~~~~~~~~-~~~~~~~--~~l~~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l 145 (590)
+|++ |+++.|+++++ +++.+++ +.+++.+.++.|+++++|||+++..|+++|++.||+|++|+|.+
T Consensus 3 ltfd--DVllvP~~s~v~~s~~dv~~~~~~~~~~~l~iPivsa~MDtVte~~mAiama~~Gglgvih~~~~--------- 71 (352)
T PF00478_consen 3 LTFD--DVLLVPGRSTVLPSRSDVSLSTKLTRNITLKIPIVSAPMDTVTESEMAIAMARLGGLGVIHRNMS--------- 71 (352)
T ss_dssp --GG--GEEEE--SBSSTGGGGG-BEEEESSTSEEESSSEEE-SSTTTSSHHHHHHHHHTTSEEEEESSSC---------
T ss_pred Cccc--cEEEecCCCCCCCCHhheECcccccCCEeecCceEecCccccchHHHHHHHHHhcCCceecCCCC---------
Confidence 7899 89999999984 5555555 44888999999999999999999999999999999999999987
Q ss_pred HHcCCcEEEEcCCCCchHHHHHHHHHhhhcCCCcccccccccchHHHHHHHHHhccccccccccccCceeeEEeeCCCCC
Q psy1056 146 SQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLG 225 (590)
Q Consensus 146 ~~~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~im~~~~~~~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~ 225 (590)
.+.+.+.++++|+.
T Consensus 72 ----------------~e~q~~~v~~vK~~-------------------------------------------------- 85 (352)
T PF00478_consen 72 ----------------IEEQAEEVKKVKRY-------------------------------------------------- 85 (352)
T ss_dssp ----------------HHHHHHHHHHHHTH--------------------------------------------------
T ss_pred ----------------HHHHHHHHhhhccc--------------------------------------------------
Confidence 77777777777640
Q ss_pred CeEEEEEecchhhccccccccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccc
Q psy1056 226 EKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKS 305 (590)
Q Consensus 226 ~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~ 305 (590)
T Consensus 86 -------------------------------------------------------------------------------- 85 (352)
T PF00478_consen 86 -------------------------------------------------------------------------------- 85 (352)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCcccCCceEEeEeeccchhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHH
Q psy1056 306 RDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQP 385 (590)
Q Consensus 306 ~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a 385 (590)
++...++..+++++++++++.++..++++.|+++|+|+++||.++|+...+++.++++|+.+|++|||+|||.|++.|
T Consensus 86 --~~~a~~d~~~~l~V~aavg~~~~~~er~~~L~~agvD~ivID~a~g~s~~~~~~ik~ik~~~~~~~viaGNV~T~e~a 163 (352)
T PF00478_consen 86 --YPNASKDEKGRLLVAAAVGTRDDDFERAEALVEAGVDVIVIDSAHGHSEHVIDMIKKIKKKFPDVPVIAGNVVTYEGA 163 (352)
T ss_dssp --HTTHHBHTTSCBCEEEEEESSTCHHHHHHHHHHTT-SEEEEE-SSTTSHHHHHHHHHHHHHSTTSEEEEEEE-SHHHH
T ss_pred --cccccccccccceEEEEecCCHHHHHHHHHHHHcCCCEEEccccCccHHHHHHHHHHHHHhCCCceEEecccCCHHHH
Confidence 122234556778899999999889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCEEEE-----cccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEEC
Q psy1056 386 RATLLNFIYQIEM-----IKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMG 459 (590)
Q Consensus 386 ~~l~~~Gvd~i~v-----~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g 459 (590)
+.|+++|||+|+| |+|+||. .+|+|+ |++++.+|++++.++++||||||||++++||+|||++|||+||+|
T Consensus 164 ~~L~~aGad~vkVGiGpGsiCtTr~---v~GvG~PQ~tAv~~~a~~a~~~~v~iIADGGi~~sGDi~KAla~GAd~VMlG 240 (352)
T PF00478_consen 164 KDLIDAGADAVKVGIGPGSICTTRE---VTGVGVPQLTAVYECAEAARDYGVPIIADGGIRTSGDIVKALAAGADAVMLG 240 (352)
T ss_dssp HHHHHTT-SEEEESSSSSTTBHHHH---HHSBSCTHHHHHHHHHHHHHCTTSEEEEESS-SSHHHHHHHHHTT-SEEEES
T ss_pred HHHHHcCCCEEEEeccCCccccccc---ccccCCcHHHHHHHHHHHhhhccCceeecCCcCcccceeeeeeecccceeec
Confidence 9999999999999 9999999 999999 999999999999989999999999999999999999999999999
Q ss_pred ccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecccceeEEeeCCchhchHHHHHhh
Q psy1056 460 SLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCG 539 (590)
Q Consensus 460 ~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~~~~~~~~~~~ 539 (590)
++|++|+||||++++++|++||.||||||.+||.++ +|+.+||+++..+..++||+|+.+||+|++.++|++|.++
T Consensus 241 ~llAgt~EsPG~~~~~~g~~~K~yrGMgS~~A~~~~----~~~~~ry~~~~~~~~v~eGve~~vp~~G~v~~~l~~l~gg 316 (352)
T PF00478_consen 241 SLLAGTDESPGEVIYIDGKRYKKYRGMGSLGAMKKR----RGSGDRYFQAEDKKFVPEGVEGLVPYKGSVSDILPQLVGG 316 (352)
T ss_dssp TTTTTBTTSSSEEEEETTEEEEEEEETTSHHHHHHH----STTGCTCTSSTSSTSSSSBEEEEEE-BB-HHHHHHHHHHH
T ss_pred hhhccCcCCCCceEEECCeEEEEecccccHHHHhhc----cccchhccccccccccccceeecCCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999752 4688999988777889999999999999999999999999
Q ss_pred hhhhCcccCcCcHHHHHHhhccCceEEEEEecCccccCCCC
Q psy1056 540 LKHGCQDIGAKSLSNLRAMMYSGELKFEKRTLCAQNEGSVH 580 (590)
Q Consensus 540 l~~~m~~~G~~~i~~l~~~~~~~~~~~~~~~~~~~~e~~~h 580 (590)
||++|+|+|+.||+|||++ ++|+++|+++++||+||
T Consensus 317 lrs~m~y~Ga~~i~el~~~-----~~fvrvs~a~~~e~~~H 352 (352)
T PF00478_consen 317 LRSGMGYVGARSIKELRKK-----ARFVRVSSAGIKESHPH 352 (352)
T ss_dssp HHHHHHHTTSSBHHHHHHH-----HEEEEESHHHHHHHSS-
T ss_pred HHHHHHhcCcccHHHHHhC-----CeEEEEChhhccccCCC
Confidence 9999999999999999999 89999999999999999
|
These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. |
| >PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-60 Score=471.98 Aligned_cols=317 Identities=23% Similarity=0.300 Sum_probs=281.8
Q ss_pred EeccccccccCCCCCCC--CccCCcccccc----cccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHH
Q psy1056 69 VTSRDVDFLENSANMDL--KIEKDLSSPLT----KKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRL 142 (590)
Q Consensus 69 vT~~Did~l~~~~~~~~--~~~~~~~~~l~----~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~ 142 (590)
+|++ |+++.|+++.+ +++++++..+. +...+..|+++++|||+++..|+.++++.|+++++|++.+
T Consensus 9 l~f~--DVll~P~~s~v~sRsevdl~~~~~~~~~~~~~~giPii~AnMdTV~~~~mA~~la~~g~~~~iHk~~~------ 80 (346)
T PRK05096 9 LGFK--DVLIRPKRSTLKSRSDVELERQFTFKHSGQSWSGVPIIAANMDTVGTFEMAKALASFDILTAVHKHYS------ 80 (346)
T ss_pred CCce--eEEEecCcCccccHHHceecceeeeecccccccCCceEecCCCccccHHHHHHHHHCCCeEEEecCCC------
Confidence 6888 89999999998 36888877665 4556679999999999999999999999999999999866
Q ss_pred HHHHHcCCcEEEEcCCCCchHHHHHHHHHhhhcCCCcccccccccchHHHHHHHHHhccccccccccccCceeeEEeeCC
Q psy1056 143 KLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENG 222 (590)
Q Consensus 143 ~~l~~~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~im~~~~~~~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~ 222 (590)
.+.+.+.++.++.
T Consensus 81 -------------------~e~~~~fv~~~~~------------------------------------------------ 93 (346)
T PRK05096 81 -------------------VEEWAAFVNNSSA------------------------------------------------ 93 (346)
T ss_pred -------------------HHHHHHHHHhccc------------------------------------------------
Confidence 3333333322211
Q ss_pred CCCCeEEEEEecchhhccccccccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccc
Q psy1056 223 KLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDL 302 (590)
Q Consensus 223 ~~~~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dl 302 (590)
.
T Consensus 94 ------------------------------------~------------------------------------------- 94 (346)
T PRK05096 94 ------------------------------------D------------------------------------------- 94 (346)
T ss_pred ------------------------------------c-------------------------------------------
Confidence 0
Q ss_pred ccccCCCCCCcccCCceEEeEeeccchhHHHHHHHHHHc--CCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEecccc
Q psy1056 303 KKSRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQA--GVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVL 380 (590)
Q Consensus 303 l~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~--gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~ 380 (590)
.... +..+++..++..++++.|+++ ++|+++||++||++..+++.++++|+.+|+.++|+|||.
T Consensus 95 ------------~~~~--~~vavG~~~~d~er~~~L~~~~~g~D~iviD~AhGhs~~~i~~ik~ik~~~P~~~vIaGNV~ 160 (346)
T PRK05096 95 ------------VLKH--VMVSTGTSDADFEKTKQILALSPALNFICIDVANGYSEHFVQFVAKAREAWPDKTICAGNVV 160 (346)
T ss_pred ------------ccce--EEEEecCCHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHHhCCCCcEEEeccc
Confidence 0011 223566667778999999995 999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHCCCCEEEE-----cccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCC
Q psy1056 381 FGYQPRATLLNFIYQIEM-----IKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGAS 454 (590)
Q Consensus 381 s~~~a~~l~~~Gvd~i~v-----~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~ 454 (590)
|++.++.|+++|||+++| |+|+||. .+|.|+ |.+++.+|++++.+.++||||||||++++||+|||++|||
T Consensus 161 T~e~a~~Li~aGAD~vKVGIGpGSiCtTr~---vtGvG~PQltAV~~~a~~a~~~gvpiIADGGi~~sGDI~KAlaaGAd 237 (346)
T PRK05096 161 TGEMVEELILSGADIVKVGIGPGSVCTTRV---KTGVGYPQLSAVIECADAAHGLGGQIVSDGGCTVPGDVAKAFGGGAD 237 (346)
T ss_pred CHHHHHHHHHcCCCEEEEcccCCccccCcc---ccccChhHHHHHHHHHHHHHHcCCCEEecCCcccccHHHHHHHcCCC
Confidence 999999999999999999 9999999 999999 9999999999999889999999999999999999999999
Q ss_pred EEEECccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecccceeEEeeCCchhchHH
Q psy1056 455 TAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLP 534 (590)
Q Consensus 455 ~v~~g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~~~~~~ 534 (590)
+||+|++|++++||||+++++||++||.||||||.+||.++ +|+.+||+ ++||+++.+||+|++.++|.
T Consensus 238 ~VMlGsllAGt~EsPGe~~~~~G~~~K~yrGMgS~~Am~~~----~g~~~ry~-------~~EG~~~~Vp~kG~v~~~i~ 306 (346)
T PRK05096 238 FVMLGGMLAGHEESGGEIVEENGEKFMLFYGMSSESAMKRH----VGGVAEYR-------AAEGKTVKLPLRGPVENTAR 306 (346)
T ss_pred EEEeChhhcCcccCCCcEEEECCEEEEEEeccccHHHHhhc----cCcccccc-------cccCceEEeccCCcHHHHHH
Confidence 99999999999999999999999999999999999999752 46777885 58999999999999999999
Q ss_pred HHHhhhhhhCcccCcCcHHHHHHhhccCceEEEEEecC
Q psy1056 535 YLQCGLKHGCQDIGAKSLSNLRAMMYSGELKFEKRTLC 572 (590)
Q Consensus 535 ~~~~~l~~~m~~~G~~~i~~l~~~~~~~~~~~~~~~~~ 572 (590)
++.++|||+|+|+|+++|+|||++ ++|+++|..
T Consensus 307 ~l~gGlrs~m~Y~Ga~~i~el~~~-----a~fv~vt~q 339 (346)
T PRK05096 307 DILGGLRSACTYVGASRLKELTKR-----TTFIRVQEQ 339 (346)
T ss_pred HHHHHHHHHHcccCcCcHHHHHhC-----CeEEEEChh
Confidence 999999999999999999999998 999999875
|
|
| >TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-59 Score=465.55 Aligned_cols=317 Identities=23% Similarity=0.329 Sum_probs=282.7
Q ss_pred EeccccccccCCCCCCC--CccCCcccccc----cccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHH
Q psy1056 69 VTSRDVDFLENSANMDL--KIEKDLSSPLT----KKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRL 142 (590)
Q Consensus 69 vT~~Did~l~~~~~~~~--~~~~~~~~~l~----~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~ 142 (590)
+|++ |+++.|+++.+ ++++++++.++ +...+..|+++++|+|+++..|+.++++.|+++++|++.+
T Consensus 8 l~f~--DVll~P~~s~v~sR~evdl~~~~~~~~~~~~~~~iPii~AnMdtv~~~~mA~~la~~g~~~~iHk~~~------ 79 (343)
T TIGR01305 8 LDFK--DVLLRPKRSTLKSRADVELERTFTFRNSKQTYSGVPIIAANMDTVGTFEMAAALSQHSIFTAIHKHYS------ 79 (343)
T ss_pred CCcc--ceEEecCcCccCcHHHceeeEEEccccCCceeeCCceEecCCCcccCHHHHHHHHHCCCeEEEeeCCC------
Confidence 7888 89999999998 48999999888 6677899999999999999999999999999999999865
Q ss_pred HHHHHcCCcEEEEcCCCCchHHHHHHHHHhhhcCCCcccccccccchHHHHHHHHHhccccccccccccCceeeEEeeCC
Q psy1056 143 KLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENG 222 (590)
Q Consensus 143 ~~l~~~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~im~~~~~~~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~ 222 (590)
.+.+.+.++.++.
T Consensus 80 -------------------~e~~~~~v~~~~~------------------------------------------------ 92 (343)
T TIGR01305 80 -------------------VDEWKAFATNSSP------------------------------------------------ 92 (343)
T ss_pred -------------------HHHHHHHHHhhcc------------------------------------------------
Confidence 3333332221110
Q ss_pred CCCCeEEEEEecchhhccccccccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccc
Q psy1056 223 KLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDL 302 (590)
Q Consensus 223 ~~~~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dl 302 (590)
T Consensus 93 -------------------------------------------------------------------------------- 92 (343)
T TIGR01305 93 -------------------------------------------------------------------------------- 92 (343)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCCCcccCCceEEeEeeccchhHHHHHHHHHHcC--CcEEEEecCCCchhhHHHHHHHHHHhCCCceEEecccc
Q psy1056 303 KKSRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAG--VDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVL 380 (590)
Q Consensus 303 l~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~g--ad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~ 380 (590)
+.... +..+++..++..++++.|++++ +|+++||++||++..+++.++++|+.||+.++|.|||.
T Consensus 93 -----------~~~~~--~~vsvG~~~~d~er~~~L~~a~~~~d~iviD~AhGhs~~~i~~ik~ir~~~p~~~viaGNV~ 159 (343)
T TIGR01305 93 -----------DCLQN--VAVSSGSSDNDLEKMTSILEAVPQLKFICLDVANGYSEHFVEFVKLVREAFPEHTIMAGNVV 159 (343)
T ss_pred -----------cccce--EEEEeccCHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHhhCCCCeEEEeccc
Confidence 00111 1225666777889999999985 99999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHCCCCEEEE-----cccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCC
Q psy1056 381 FGYQPRATLLNFIYQIEM-----IKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGAS 454 (590)
Q Consensus 381 s~~~a~~l~~~Gvd~i~v-----~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~ 454 (590)
|+++|+.|+++|||+|+| |+|++|. .+|.|+ +.+++.+|++++...++|||+||||++++||+||||+|||
T Consensus 160 T~e~a~~Li~aGAD~ikVgiGpGSicttR~---~~Gvg~pqltAv~~~a~aa~~~~v~VIaDGGIr~~gDI~KALA~GAd 236 (343)
T TIGR01305 160 TGEMVEELILSGADIVKVGIGPGSVCTTRT---KTGVGYPQLSAVIECADAAHGLKGHIISDGGCTCPGDVAKAFGAGAD 236 (343)
T ss_pred CHHHHHHHHHcCCCEEEEcccCCCcccCce---eCCCCcCHHHHHHHHHHHhccCCCeEEEcCCcCchhHHHHHHHcCCC
Confidence 999999999999999999 5999999 999998 9999999999998878999999999999999999999999
Q ss_pred EEEECccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecccceeEEeeCCchhchHH
Q psy1056 455 TAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLP 534 (590)
Q Consensus 455 ~v~~g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~~~~~~ 534 (590)
+||+|++|++++||||++++++|++||.||||||.+||.+. +|+.+||+ .+||+++.+||||++.++|.
T Consensus 237 ~VMlG~llAG~~Espg~~i~~~G~~~K~yrGMgS~~Am~~~----~g~~~ry~-------~~EG~e~~vp~kG~v~~~l~ 305 (343)
T TIGR01305 237 FVMLGGMFAGHTESGGEVIERNGRKFKLFYGMSSDTAMKKH----AGGVAEYR-------ASEGKTVEVPYRGDVENTIL 305 (343)
T ss_pred EEEECHhhhCcCcCcceeEeECCEEEEEEeccchHHHHhhc----cCcccccc-------cccCceEEeccCCcHHHHHH
Confidence 99999999999999999999999999999999999999742 46778886 36999999999999999999
Q ss_pred HHHhhhhhhCcccCcCcHHHHHHhhccCceEEEEEecC
Q psy1056 535 YLQCGLKHGCQDIGAKSLSNLRAMMYSGELKFEKRTLC 572 (590)
Q Consensus 535 ~~~~~l~~~m~~~G~~~i~~l~~~~~~~~~~~~~~~~~ 572 (590)
++.++|||+|+|+|+.||+|||++ ++|+++|++
T Consensus 306 ~l~gGlrs~m~Y~Ga~~i~el~~~-----a~fv~vt~~ 338 (343)
T TIGR01305 306 DILGGLRSACTYVGAAKLKELSKR-----ATFIRVTQQ 338 (343)
T ss_pred HHHHHHHHHhhccCcCcHHHHHhC-----CEEEEECcc
Confidence 999999999999999999999998 999999886
|
A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences. |
| >cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-50 Score=412.09 Aligned_cols=317 Identities=46% Similarity=0.647 Sum_probs=277.7
Q ss_pred EeccccccccCCCCCCC-CccCCcccccccccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHH
Q psy1056 69 VTSRDVDFLENSANMDL-KIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQ 147 (590)
Q Consensus 69 vT~~Did~l~~~~~~~~-~~~~~~~~~l~~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~ 147 (590)
+|++ |+++.|+++++ ++++++++++++.+.++.|+++++|+++++..|+.++++.||+|++|.+.+
T Consensus 2 ~~~d--dv~l~p~~~~~~~~~vdl~t~l~~~~~l~~Piv~apM~~vt~~~ma~ava~~GglGvi~~~~~----------- 68 (325)
T cd00381 2 LTFD--DVLLVPGYSTVLPSEVDLSTKLTKNITLNIPLVSAPMDTVTESEMAIAMARLGGIGVIHRNMS----------- 68 (325)
T ss_pred CCcc--cEEEeCCCCCCCHHHceeeEEecCccccCCCEEecCCCcCCcHHHHHHHHHCCCEEEEeCCCC-----------
Confidence 6888 88888999998 899999999998888999999999999999999999999999999987643
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHhhhcCCCcccccccccchHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCe
Q psy1056 148 AGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEK 227 (590)
Q Consensus 148 ~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~im~~~~~~~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~ 227 (590)
.+.+.+.++ ..
T Consensus 69 --------------~~~~~~~i~---------------------------~v---------------------------- 79 (325)
T cd00381 69 --------------IEEQAEEVR---------------------------KV---------------------------- 79 (325)
T ss_pred --------------HHHHHHHHH---------------------------Hh----------------------------
Confidence 111111100 00
Q ss_pred EEEEEecchhhccccccccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccC
Q psy1056 228 LLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRD 307 (590)
Q Consensus 228 lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~ 307 (590)
.
T Consensus 80 -------------------------------k------------------------------------------------ 80 (325)
T cd00381 80 -------------------------------K------------------------------------------------ 80 (325)
T ss_pred -------------------------------c------------------------------------------------
Confidence 0
Q ss_pred CCCCCcccCCceEEeEeeccchhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHH
Q psy1056 308 YPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRA 387 (590)
Q Consensus 308 ~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~ 387 (590)
+++.+.++++...+..+.++.++++|+++++++.++|++..+.+.++++++.+|++|+++|++.|.+.|+.
T Consensus 81 ---------~~l~v~~~~~~~~~~~~~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~ 151 (325)
T cd00381 81 ---------GRLLVGAAVGTREDDKERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAGNVVTAEAARD 151 (325)
T ss_pred ---------cCceEEEecCCChhHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEECCCCCHHHHHH
Confidence 11223334444455678899999999999999999999888899999999998889999999999999999
Q ss_pred HHHCCCCEEEE-----cccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcc
Q psy1056 388 TLLNFIYQIEM-----IKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSL 461 (590)
Q Consensus 388 l~~~Gvd~i~v-----~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~ 461 (590)
+.++|||+|.| +.|+++. ..+||. +.+++.++.+++...++|||++|||+++.|++|||++||++||+|++
T Consensus 152 l~~aGaD~I~vg~g~G~~~~t~~---~~g~g~p~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAla~GA~~VmiGt~ 228 (325)
T cd00381 152 LIDAGADGVKVGIGPGSICTTRI---VTGVGVPQATAVADVAAAARDYGVPVIADGGIRTSGDIVKALAAGADAVMLGSL 228 (325)
T ss_pred HHhcCCCEEEECCCCCcCcccce---eCCCCCCHHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHcCCCEEEecch
Confidence 99999999988 4577777 788999 99999999988877789999999999999999999999999999999
Q ss_pred ccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecccceeEEeeCCchhchHHHHHhhhh
Q psy1056 462 LAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCGLK 541 (590)
Q Consensus 462 l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~~~~~~~~~~~l~ 541 (590)
|++|+|||++++++||+.||.||||+|+.||.+ ++.+|||++..+.+++||+|+.+||+|++.+++.++.++||
T Consensus 229 fa~t~Es~g~~~~~~g~~~~~~~g~~s~~~~~~------~~~~~~~~~~~~~~~~eg~~~~v~~~g~~~~~~~~~~~glr 302 (325)
T cd00381 229 LAGTDESPGEYIEINGKRYKEYRGMGSLGAMKK------GGGDRYFGEEAKKLVPEGVEGIVPYKGSVKDVLPQLVGGLR 302 (325)
T ss_pred hcccccCCCcEEEECCeeeeeEecccchhhhhc------CccccccccccccccCCceEEEEecCCcHHHHHHHHHHHHH
Confidence 999999999999999999999999999999985 46788998877788999999999999999999999999999
Q ss_pred hhCcccCcCcHHHHHHhhccCceEEEEE
Q psy1056 542 HGCQDIGAKSLSNLRAMMYSGELKFEKR 569 (590)
Q Consensus 542 ~~m~~~G~~~i~~l~~~~~~~~~~~~~~ 569 (590)
++|+|+|+.||+|||++ ++|+++
T Consensus 303 ~~~~y~G~~~l~~~~~~-----~~~~~~ 325 (325)
T cd00381 303 SSMGYCGAKSLKELQEK-----ARFVRI 325 (325)
T ss_pred HHHHhcCCCcHHHHHhc-----CeEEeC
Confidence 99999999999999998 889874
|
IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents. |
| >TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-44 Score=365.04 Aligned_cols=227 Identities=29% Similarity=0.372 Sum_probs=198.4
Q ss_pred EEeEeeccchhHHHHHHHHHHcC--CcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEE
Q psy1056 320 IVGAAIGTREADKNRLKLLSQAG--VDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIE 397 (590)
Q Consensus 320 ~v~a~i~~~~~~~e~~~~li~~g--ad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~ 397 (590)
+++++++...+..+++..+++++ +|++++|++||++..+++.++++++.+|..+++.|||.+.++|+.|+++|||+|+
T Consensus 84 ~v~~SvG~t~e~~~r~~~lv~a~~~~d~i~~D~ahg~s~~~~~~i~~i~~~~p~~~vi~GnV~t~e~a~~l~~aGad~I~ 163 (321)
T TIGR01306 84 FASISVGVKACEYEFVTQLAEEALTPEYITIDIAHGHSNSVINMIKHIKTHLPDSFVIAGNVGTPEAVRELENAGADATK 163 (321)
T ss_pred EEEEEcCCCHHHHHHHHHHHhcCCCCCEEEEeCccCchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHcCcCEEE
Confidence 35666777777889999999998 7999999999999999999999999998777999999999999999999999999
Q ss_pred E-----cccccccCCCcccccc---chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCCCCCC
Q psy1056 398 M-----IKFIKKEYPDMQVIGR---NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAP 469 (590)
Q Consensus 398 v-----~~~~~~~~~~~~~~g~---~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~~es~ 469 (590)
| ++|+++. .++.|. +.+++.++++.+ ++|||+||||+++.|++|||++|||+||+|++|++|+|||
T Consensus 164 V~~G~G~~~~tr~---~~g~g~~~~~l~ai~ev~~a~---~~pVIadGGIr~~~Di~KALa~GAd~Vmig~~~ag~~Esp 237 (321)
T TIGR01306 164 VGIGPGKVCITKI---KTGFGTGGWQLAALRWCAKAA---RKPIIADGGIRTHGDIAKSIRFGASMVMIGSLFAGHEESP 237 (321)
T ss_pred ECCCCCcccccee---eeccCCCchHHHHHHHHHHhc---CCeEEEECCcCcHHHHHHHHHcCCCEEeechhhcCcccCC
Confidence 9 4677776 443332 566788887654 5999999999999999999999999999999999999999
Q ss_pred CceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecccceeEEeeCCchhchHHHHHhhhhhhCcccCc
Q psy1056 470 GEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGA 549 (590)
Q Consensus 470 ~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~~~~~~~~~~~l~~~m~~~G~ 549 (590)
|++++++|++||.||||++. +.+ | .. ...||+|+.|||+|++.++|.++.++||++|+|+|+
T Consensus 238 g~~~~~~g~~~k~y~g~~~~--~~~------~---------~~-~~~eg~~~~v~~~g~~~~~~~~~~~glr~~~~~~G~ 299 (321)
T TIGR01306 238 GETVEKDGKLYKEYFGSASE--FQK------G---------EH-KNVEGKKMFVEHKGSLSDTLIEMQQDLQSSISYAGG 299 (321)
T ss_pred CceEeeCCeEHhhhcCchhh--hcc------c---------cc-ccccceEEEeccCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999997753 321 1 11 124999999999999999999999999999999999
Q ss_pred CcHHHHHHhhccCceEEEEEecCcccc
Q psy1056 550 KSLSNLRAMMYSGELKFEKRTLCAQNE 576 (590)
Q Consensus 550 ~~i~~l~~~~~~~~~~~~~~~~~~~~e 576 (590)
++|+|||+ ++|+++|++++.+
T Consensus 300 ~~l~~~~~------~~~~~~~~~~~~~ 320 (321)
T TIGR01306 300 KDLDSLRT------VDYVIVKNSIFNG 320 (321)
T ss_pred CcHHHHhh------CCEEEEecCCcCC
Confidence 99999995 7999999998754
|
A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages. |
| >PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-42 Score=349.46 Aligned_cols=228 Identities=27% Similarity=0.369 Sum_probs=196.4
Q ss_pred EEeEeeccchhHHHHHHHHHHcCC--cEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEE
Q psy1056 320 IVGAAIGTREADKNRLKLLSQAGV--DVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIE 397 (590)
Q Consensus 320 ~v~a~i~~~~~~~e~~~~li~~ga--d~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~ 397 (590)
+++++++...+..+++..|+++|+ |++.+|.++|+...+.+.++++++.||++|+|+|+|.|.++|+.|.++|+|+++
T Consensus 87 ~v~~~vg~~~~~~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~aGad~i~ 166 (326)
T PRK05458 87 IASISVGVKDDEYDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELENAGADATK 166 (326)
T ss_pred EEEEEecCCHHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHHcCcCEEE
Confidence 456666766777899999999965 999999999999999999999999999999999999999999999999999999
Q ss_pred E-----cccccccCCCcccccc---chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCCCCCC
Q psy1056 398 M-----IKFIKKEYPDMQVIGR---NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAP 469 (590)
Q Consensus 398 v-----~~~~~~~~~~~~~~g~---~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~~es~ 469 (590)
| ++|+++. ..+.+. +.+++.++++.+ ++||||+|||+++.|++|||++|||+||+|++|++++|||
T Consensus 167 vg~~~G~~~~t~~---~~g~~~~~w~l~ai~~~~~~~---~ipVIAdGGI~~~~Di~KaLa~GA~aV~vG~~~~~~~esp 240 (326)
T PRK05458 167 VGIGPGKVCITKI---KTGFGTGGWQLAALRWCAKAA---RKPIIADGGIRTHGDIAKSIRFGATMVMIGSLFAGHEESP 240 (326)
T ss_pred ECCCCCccccccc---ccCCCCCccHHHHHHHHHHHc---CCCEEEeCCCCCHHHHHHHHHhCCCEEEechhhcCCccCC
Confidence 8 4555544 222222 344566666543 5999999999999999999999999999999999999999
Q ss_pred CceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecccceeEEeeCCchhchHHHHHhhhhhhCcccCc
Q psy1056 470 GEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGA 549 (590)
Q Consensus 470 ~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~~~~~~~~~~~l~~~m~~~G~ 549 (590)
|++++++|+.||.||||.+.- .+ + .....||+|+.+||+|++.++|++|.++||++|+|+|+
T Consensus 241 g~~~~~~g~~~k~y~g~~~~~--~~------~----------~~~~~eG~e~~v~~~G~l~~~l~~l~~gLr~~m~~~Ga 302 (326)
T PRK05458 241 GKTVEIDGKLYKEYFGSASEF--QK------G----------EYKNVEGKKILVPHKGSLKDTLTEMEQDLQSSISYAGG 302 (326)
T ss_pred CceeeecchhHHHhhCcHhhh--cc------c----------cccccCCceEEecccCCHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999976422 11 0 01234999999999999999999999999999999999
Q ss_pred CcHHHHHHhhccCceEEEEEecCccccC
Q psy1056 550 KSLSNLRAMMYSGELKFEKRTLCAQNEG 577 (590)
Q Consensus 550 ~~i~~l~~~~~~~~~~~~~~~~~~~~e~ 577 (590)
+||+|||+ ++|+++|++++.|-
T Consensus 303 ~~i~el~~------~~~v~~~~~~~~~~ 324 (326)
T PRK05458 303 RDLDAIRK------VDYVIVKNSIFNGD 324 (326)
T ss_pred CCHHHHhc------CCEEEEecCccccc
Confidence 99999995 79999999999984
|
|
| >PRK08649 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=316.31 Aligned_cols=193 Identities=25% Similarity=0.311 Sum_probs=166.5
Q ss_pred hHHHHHHHHHHcCCcEEEEec-----CCCchh-hHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEE-----
Q psy1056 330 ADKNRLKLLSQAGVDVVILDS-----SQGNSI-YQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEM----- 398 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~-----~~G~~~-~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v----- 398 (590)
+..+.++.+.++|+++++++. .+++.. .+.+..+.+++ . ++||++|+|.|.++|++++++|||+|.+
T Consensus 142 ~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~-~-~ipVIaG~V~t~e~A~~l~~aGAD~V~VG~G~G 219 (368)
T PRK08649 142 RAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYE-L-DVPVIVGGCVTYTTALHLMRTGAAGVLVGIGPG 219 (368)
T ss_pred CHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHH-C-CCCEEEeCCCCHHHHHHHHHcCCCEEEECCCCC
Confidence 457889999999999999964 233333 34554444444 4 7999999999999999999999999988
Q ss_pred cccccccCCCcccccc-chhHHHHHHHHHhcC-------CCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCCCCCCC
Q psy1056 399 IKFIKKEYPDMQVIGR-NGTAVYRVAEYASRR-------GVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAPG 470 (590)
Q Consensus 399 ~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~-------~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~~es~~ 470 (590)
++|+++. ..+||+ +.+++.+++++++++ ++||||+|||+++.|++|||++|||+||+|++|++|+|||+
T Consensus 220 s~~~t~~---~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~~~diakAlalGAd~Vm~Gs~fa~t~Espg 296 (368)
T PRK08649 220 AACTSRG---VLGIGVPMATAIADVAAARRDYLDETGGRYVHVIADGGIGTSGDIAKAIACGADAVMLGSPLARAAEAPG 296 (368)
T ss_pred cCCCCcc---cCCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCHHHHHHHHHcCCCeecccchhcccccCCC
Confidence 5788887 888999 999999987654332 59999999999999999999999999999999999999999
Q ss_pred ceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecccceeEEeeCCchhchHH----------HHHhhh
Q psy1056 471 EYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLP----------YLQCGL 540 (590)
Q Consensus 471 ~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~~~~~~----------~~~~~l 540 (590)
+. .||||+|.. ..+|||+++.+||+|++.++|. +|.++|
T Consensus 297 ~~---------~~~gm~s~~----------------------~~~~eg~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~l 345 (368)
T PRK08649 297 RG---------WHWGMAAPH----------------------PSLPRGTRIKVGTTGSLEQILFGPSHLPDGTHNLVGAL 345 (368)
T ss_pred cc---------cccCcccCC----------------------CcCCCceEEeCCCcCcHHHHhcCcccccchHHHHHHHH
Confidence 97 579999942 2589999999999999999999 999999
Q ss_pred hhhCcccCcCcHHHHHHh
Q psy1056 541 KHGCQDIGAKSLSNLRAM 558 (590)
Q Consensus 541 ~~~m~~~G~~~i~~l~~~ 558 (590)
|++|+|+|+++|+|||+.
T Consensus 346 ~~~m~~~g~~~~~~~~~~ 363 (368)
T PRK08649 346 RRSMATLGYSDLKEFQKV 363 (368)
T ss_pred HHHHHhcCCCcHHHHhhc
Confidence 999999999999999974
|
|
| >TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.7e-24 Score=219.68 Aligned_cols=200 Identities=22% Similarity=0.262 Sum_probs=143.4
Q ss_pred hHHHHHHHHHHcCCcEEEEecC---CCc--hhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEE---ccc
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSS---QGN--SIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEM---IKF 401 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~---~G~--~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v---~~~ 401 (590)
...+.++.+.++|++.++++.. +.+ ...-...+.++++.+ ++||++|+|.|.++|+++.++|||+|.+ ..|
T Consensus 143 ~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~-~IPVI~G~V~t~e~A~~~~~aGaDgV~~G~gg~~ 221 (369)
T TIGR01304 143 NAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGEL-DVPVIAGGVNDYTTALHLMRTGAAGVIVGPGGAN 221 (369)
T ss_pred CHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHC-CCCEEEeCCCCHHHHHHHHHcCCCEEEECCCCCc
Confidence 4568889999999999999732 111 111123455555556 7999999999999999999999999965 344
Q ss_pred ccccCCCcccccc-chhHHHHHHHHHh----cC---CCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCCCCCCCceE
Q psy1056 402 IKKEYPDMQVIGR-NGTAVYRVAEYAS----RR---GVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYF 473 (590)
Q Consensus 402 ~~~~~~~~~~~g~-~~~~l~~~~~~~~----~~---~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~~es~~~~~ 473 (590)
+++. ..+++. +++++.+++.+.. .. .+||||+|||+++.|++|||++|||+||+|++|+.+.||||+-+
T Consensus 222 ~~~~---~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~tg~di~kAlAlGAdaV~iGt~~a~a~Eapg~~~ 298 (369)
T TIGR01304 222 TTRL---VLGIEVPMATAIADVAAARRDYLDETGGRYVHVIADGGIETSGDLVKAIACGADAVVLGSPLARAAEAPGRGY 298 (369)
T ss_pred cccc---ccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHHHcCCCEeeeHHHHHhhhcCCCCCC
Confidence 5555 677888 8888888875433 22 39999999999999999999999999999999999999999732
Q ss_pred eecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeeccccee-------EEeeCCchhchHHHHHhhhhhhCcc
Q psy1056 474 FSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSG-------AIVDKGSVLRFLPYLQCGLKHGCQD 546 (590)
Q Consensus 474 ~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~eg~~~-------~~~~~~~~~~~~~~~~~~l~~~m~~ 546 (590)
||||.+...--. +|. .++.|..+ ..-...+..+=-.+|.+.||.+|..
T Consensus 299 ---------~w~~~~~~~~~~-----~~~-----------~~~~~~~~~~~~~~~~~~gp~~~~~~~~n~~g~~~~~~~~ 353 (369)
T TIGR01304 299 ---------FWPAAAAHPRLP-----RGV-----------VTESGTVGEAPTLEEILHGPSTLPDGVENFEGGLKRAMAK 353 (369)
T ss_pred ---------ccchhhcCccCC-----ccc-----------cccccccCCCCcHHHHeeCCCCCCcchhhhHHHHHHHHHH
Confidence 477554322111 110 01111111 1101123344456899999999999
Q ss_pred cCcCcHHHHHHh
Q psy1056 547 IGAKSLSNLRAM 558 (590)
Q Consensus 547 ~G~~~i~~l~~~ 558 (590)
||..+++||++.
T Consensus 354 ~g~~~~~~~~~~ 365 (369)
T TIGR01304 354 CGYTDLKEFQKV 365 (369)
T ss_pred cCchhhhhhhhc
Confidence 999999999974
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302. |
| >KOG2550|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.1e-21 Score=194.14 Aligned_cols=205 Identities=58% Similarity=0.847 Sum_probs=156.3
Q ss_pred CcCCCCCHHHHHHHHHhhhcccCccccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccccccccCC
Q psy1056 1 IIHHNCTPEYQANEVLKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENS 80 (590)
Q Consensus 1 ~~~~~~~~~~~~~~~~~vk~~~~~m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Did~l~~~ 80 (590)
+||+|||||.|++.+++||++++.++.+|++++|+.|+.++++.-..+++..+||++++....||+|++|.+|++|+-.
T Consensus 90 ~IHhNctpe~QA~~v~~vK~~~~g~~~~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~~~- 168 (503)
T KOG2550|consen 90 FIHHNCTPEDQADMVRRVKNYENGFINNPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFLED- 168 (503)
T ss_pred eeecCCCHHHHHHHHHHHHHhhcccccCCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhhhc-
Confidence 6999999999999999999999999999999999999999999999999999999998888899999999999988721
Q ss_pred CCCCC------------CccCCccc---ccccccccCCceeeCCCCCCchHHHHHHHHHcC------------CeeEecC
Q psy1056 81 ANMDL------------KIEKDLSS---PLTKKITLAAPLVSSPMDTVTESDMAIAMALCG------------GIGAAIG 133 (590)
Q Consensus 81 ~~~~~------------~~~~~~~~---~l~~~~~~~~piv~~~~~tv~~~~~~~~~~~~G------------~~gi~~~ 133 (590)
...+ |..++++. .|.+...-+.|++.....++.--...-.+...+ ..|..-.
T Consensus 169 -~~~~~~~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~~~yPlask~~~kqll~gAaiG 247 (503)
T KOG2550|consen 169 -NSLLVSDVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKNRDYPLASKDSTKQLLCGAAIG 247 (503)
T ss_pred -ccchhhhhcccccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhhhcCCCccccCcccceeeeeccc
Confidence 1111 11111111 122222234455544333321100000000000 0111223
Q ss_pred CCcchHHHHHHHHHcCCcEEEEcCCCCchHHHHHHHHHhhhcCCCcccccccccchHHHHHHHHHhcccccccc
Q psy1056 134 TREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGLRVGS 207 (590)
Q Consensus 134 ~~~d~~~~~~~l~~~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~im~~~~~~~~~~~~a~~~m~~~~~v~~ 207 (590)
...+|+++++.++.+|.|+|++|+++|.+.+|+++++++|++||..++|..|++|.+..+.++...+|+++||+
T Consensus 248 Tre~dK~rl~ll~~aGvdvviLDSSqGnS~~qiemik~iK~~yP~l~ViaGNVVT~~qa~nLI~aGaDgLrVGM 321 (503)
T KOG2550|consen 248 TRDDDKERLDLLVQAGVDVVILDSSQGNSIYQLEMIKYIKETYPDLQIIAGNVVTKEQAANLIAAGADGLRVGM 321 (503)
T ss_pred cccchhHHHHHhhhcCCcEEEEecCCCcchhHHHHHHHHHhhCCCceeeccceeeHHHHHHHHHccCceeEecc
Confidence 44578999999999999999999999999999999999999999999999999999999999999999999986
|
|
| >PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.5e-21 Score=202.13 Aligned_cols=139 Identities=26% Similarity=0.317 Sum_probs=115.6
Q ss_pred HHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecC
Q psy1056 359 IEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADG 437 (590)
Q Consensus 359 l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~G 437 (590)
.+.|+++++.+ ++|+|+|+|.++++|+++.++|+|+|+||.+.+++ .+||. ++.+|.++++.+. .++|||+||
T Consensus 214 w~~i~~~~~~~-~~pvivKgv~~~~da~~~~~~G~~~i~vs~hGGr~----~d~~~~~~~~L~~i~~~~~-~~~~i~~dg 287 (356)
T PF01070_consen 214 WDDIEWIRKQW-KLPVIVKGVLSPEDAKRAVDAGVDGIDVSNHGGRQ----LDWGPPTIDALPEIRAAVG-DDIPIIADG 287 (356)
T ss_dssp HHHHHHHHHHC-SSEEEEEEE-SHHHHHHHHHTT-SEEEEESGTGTS----STTS-BHHHHHHHHHHHHT-TSSEEEEES
T ss_pred HHHHHHHhccc-CCceEEEecccHHHHHHHHhcCCCEEEecCCCccc----CccccccccccHHHHhhhc-CCeeEEEeC
Confidence 47799999999 79999999999999999999999999999999887 56899 9999999998774 369999999
Q ss_pred CCCCHHHHHHHHHcCCCEEEECccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecc
Q psy1056 438 GVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQ 517 (590)
Q Consensus 438 Gi~~~~di~kalalGA~~v~~g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~e 517 (590)
|||+|.|++|||+|||++|++|++|. ||++..+
T Consensus 288 Gir~g~Dv~kalaLGA~~v~igr~~l--------------------~~l~~~g--------------------------- 320 (356)
T PF01070_consen 288 GIRRGLDVAKALALGADAVGIGRPFL--------------------YALAAGG--------------------------- 320 (356)
T ss_dssp S--SHHHHHHHHHTT-SEEEESHHHH--------------------HHHHHHH---------------------------
T ss_pred CCCCHHHHHHHHHcCCCeEEEccHHH--------------------HHHHHhh---------------------------
Confidence 99999999999999999999999983 3322111
Q ss_pred cceeEEeeCCchhchHHHHHhhhhhhCcccCcCcHHHHHHh
Q psy1056 518 GVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRAM 558 (590)
Q Consensus 518 g~~~~~~~~~~~~~~~~~~~~~l~~~m~~~G~~~i~~l~~~ 558 (590)
.+ .+.++|+.|+.+|+.+|+++||++++||++.
T Consensus 321 -~~-------gv~~~~~~l~~el~~~m~l~G~~~~~~l~~~ 353 (356)
T PF01070_consen 321 -EE-------GVERVLEILKEELKRAMFLLGARSIAELRRS 353 (356)
T ss_dssp -HH-------HHHHHHHHHHHHHHHHHHHHT-SBGGGHTGG
T ss_pred -HH-------HHHHHHHHHHHHHHHHHHHHCCCCHHHhCHH
Confidence 11 2778899999999999999999999999876
|
These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A .... |
| >PRK11197 lldD L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.6e-21 Score=198.01 Aligned_cols=139 Identities=18% Similarity=0.250 Sum_probs=117.6
Q ss_pred HHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecC
Q psy1056 359 IEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADG 437 (590)
Q Consensus 359 l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~G 437 (590)
.+.|+++++.+ ++|+++|+|.+.++|+.+.++|||+|+|+.+.+++ +.+ .. +..++.++++... .++|||+||
T Consensus 234 W~di~~lr~~~-~~pvivKgV~s~~dA~~a~~~Gvd~I~Vs~hGGr~---~d~-~~~t~~~L~~i~~a~~-~~~~vi~dG 307 (381)
T PRK11197 234 WKDLEWIRDFW-DGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQ---LDG-VLSSARALPAIADAVK-GDITILADS 307 (381)
T ss_pred HHHHHHHHHhC-CCCEEEEecCCHHHHHHHHhCCCCEEEECCCCCCC---CCC-cccHHHHHHHHHHHhc-CCCeEEeeC
Confidence 36799999999 79999999999999999999999999999988887 544 23 6777778776553 359999999
Q ss_pred CCCCHHHHHHHHHcCCCEEEECccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecc
Q psy1056 438 GVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQ 517 (590)
Q Consensus 438 Gi~~~~di~kalalGA~~v~~g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~e 517 (590)
||++|.||+|||+|||++|++|++|. ||++..
T Consensus 308 GIr~g~Di~KALaLGA~~V~iGr~~l--------------------~~la~~---------------------------- 339 (381)
T PRK11197 308 GIRNGLDVVRMIALGADTVLLGRAFV--------------------YALAAA---------------------------- 339 (381)
T ss_pred CcCcHHHHHHHHHcCcCceeEhHHHH--------------------HHHHhc----------------------------
Confidence 99999999999999999999999993 343211
Q ss_pred cceeEEeeCCchhchHHHHHhhhhhhCcccCcCcHHHHHHh
Q psy1056 518 GVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRAM 558 (590)
Q Consensus 518 g~~~~~~~~~~~~~~~~~~~~~l~~~m~~~G~~~i~~l~~~ 558 (590)
|. ..|.++|+.|+.+|+.+|+++||++++||++.
T Consensus 340 G~-------~gv~~~l~~l~~El~~~m~l~G~~~i~el~~~ 373 (381)
T PRK11197 340 GQ-------AGVANLLDLIEKEMRVAMTLTGAKSISEITRD 373 (381)
T ss_pred cH-------HHHHHHHHHHHHHHHHHHHHHCCCCHHHhCHh
Confidence 11 12788899999999999999999999999876
|
|
| >KOG0538|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.4e-20 Score=181.59 Aligned_cols=140 Identities=21% Similarity=0.289 Sum_probs=123.3
Q ss_pred HHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCC
Q psy1056 359 IEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGG 438 (590)
Q Consensus 359 l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GG 438 (590)
.+-++|++..+ +.|+++|+|.+.|+|+.+.++|+++|.||++.+|+ .++...++++|.++.++... .+||..|||
T Consensus 212 W~Di~wLr~~T-~LPIvvKGilt~eDA~~Ave~G~~GIIVSNHGgRQ---lD~vpAtI~~L~Evv~aV~~-ri~V~lDGG 286 (363)
T KOG0538|consen 212 WKDIKWLRSIT-KLPIVVKGVLTGEDARKAVEAGVAGIIVSNHGGRQ---LDYVPATIEALPEVVKAVEG-RIPVFLDGG 286 (363)
T ss_pred hhhhHHHHhcC-cCCeEEEeecccHHHHHHHHhCCceEEEeCCCccc---cCcccchHHHHHHHHHHhcC-ceEEEEecC
Confidence 56789999988 89999999999999999999999999999999998 54433389999999888754 599999999
Q ss_pred CCCHHHHHHHHHcCCCEEEECccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeeccc
Q psy1056 439 VQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQG 518 (590)
Q Consensus 439 i~~~~di~kalalGA~~v~~g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~eg 518 (590)
+|+|.|+.|||||||.+|.+|+|+ .||++..+.
T Consensus 287 VR~G~DVlKALALGAk~VfiGRP~--------------------v~gLA~~Ge--------------------------- 319 (363)
T KOG0538|consen 287 VRRGTDVLKALALGAKGVFIGRPI--------------------VWGLAAKGE--------------------------- 319 (363)
T ss_pred cccchHHHHHHhcccceEEecCch--------------------heeeccccc---------------------------
Confidence 999999999999999999999999 367554321
Q ss_pred ceeEEeeCCchhchHHHHHhhhhhhCcccCcCcHHHHHHh
Q psy1056 519 VSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRAM 558 (590)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~l~~~m~~~G~~~i~~l~~~ 558 (590)
.+|+++|+.|+.++..+|.+.||+|+.|+.+.
T Consensus 320 --------~GV~~vl~iL~~efe~tmaLsGc~sv~ei~~~ 351 (363)
T KOG0538|consen 320 --------AGVKKVLDILRDEFELTMALSGCRSVKEITRN 351 (363)
T ss_pred --------hhHHHHHHHHHHHHHHHHHHhCCCchhhhCcc
Confidence 12889999999999999999999999999865
|
|
| >PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.2e-20 Score=193.37 Aligned_cols=139 Identities=22% Similarity=0.265 Sum_probs=118.7
Q ss_pred HHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecC
Q psy1056 359 IEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADG 437 (590)
Q Consensus 359 l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~G 437 (590)
.+.++++++.+ ++|+++|+|.+.++|+++.++|||+|+|+.+.+|+ . +++. ++.+|.++++.+.. ++|||+||
T Consensus 213 W~di~wlr~~~-~~PiivKgV~~~~dA~~a~~~Gvd~I~VsnhGGrq---l-d~~~~t~~~L~ei~~av~~-~~~vi~dG 286 (367)
T PLN02493 213 WKDVQWLQTIT-KLPILVKGVLTGEDARIAIQAGAAGIIVSNHGARQ---L-DYVPATISALEEVVKATQG-RIPVFLDG 286 (367)
T ss_pred HHHHHHHHhcc-CCCEEeecCCCHHHHHHHHHcCCCEEEECCCCCCC---C-CCchhHHHHHHHHHHHhCC-CCeEEEeC
Confidence 46799999998 79999999999999999999999999999998887 4 4566 78888888776542 59999999
Q ss_pred CCCCHHHHHHHHHcCCCEEEECccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecc
Q psy1056 438 GVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQ 517 (590)
Q Consensus 438 Gi~~~~di~kalalGA~~v~~g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~e 517 (590)
|||+|.|++|||+|||++|++|++|. ||++..
T Consensus 287 GIr~G~Dv~KALALGA~aV~iGr~~l--------------------~~l~~~---------------------------- 318 (367)
T PLN02493 287 GVRRGTDVFKALALGASGIFIGRPVV--------------------FSLAAE---------------------------- 318 (367)
T ss_pred CcCcHHHHHHHHHcCCCEEEEcHHHH--------------------HHHHhc----------------------------
Confidence 99999999999999999999999994 232211
Q ss_pred cceeEEeeCCchhchHHHHHhhhhhhCcccCcCcHHHHHHh
Q psy1056 518 GVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRAM 558 (590)
Q Consensus 518 g~~~~~~~~~~~~~~~~~~~~~l~~~m~~~G~~~i~~l~~~ 558 (590)
|.+ .+.++|+.|+.+|+.+|+++||+++.||++.
T Consensus 319 G~~-------gv~~~l~~l~~el~~~m~l~G~~~i~~l~~~ 352 (367)
T PLN02493 319 GEA-------GVRKVLQMLRDEFELTMALSGCRSLKEISRN 352 (367)
T ss_pred CHH-------HHHHHHHHHHHHHHHHHHHhCCCCHHHhChh
Confidence 111 1778899999999999999999999999875
|
|
| >PLN02979 glycolate oxidase | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.5e-20 Score=191.07 Aligned_cols=139 Identities=22% Similarity=0.276 Sum_probs=118.6
Q ss_pred HHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecC
Q psy1056 359 IEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADG 437 (590)
Q Consensus 359 l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~G 437 (590)
.+.++++++.+ ++|+++|+|.+.++|+++.++|||+|+|+.+.+++ . +++. ++.++.++++.+.. ++|||+||
T Consensus 212 W~dl~wlr~~~-~~PvivKgV~~~~dA~~a~~~Gvd~I~VsnhGGrq---l-d~~p~t~~~L~ei~~~~~~-~~~Vi~dG 285 (366)
T PLN02979 212 WKDVQWLQTIT-KLPILVKGVLTGEDARIAIQAGAAGIIVSNHGARQ---L-DYVPATISALEEVVKATQG-RIPVFLDG 285 (366)
T ss_pred HHHHHHHHhcc-CCCEEeecCCCHHHHHHHHhcCCCEEEECCCCcCC---C-CCchhHHHHHHHHHHHhCC-CCeEEEeC
Confidence 46799999999 79999999999999999999999999999998887 4 4566 78888888776542 59999999
Q ss_pred CCCCHHHHHHHHHcCCCEEEECccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecc
Q psy1056 438 GVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQ 517 (590)
Q Consensus 438 Gi~~~~di~kalalGA~~v~~g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~e 517 (590)
|||+|.||+|||+|||++|++|+++. ||++. .
T Consensus 286 GIr~G~Di~KALALGAdaV~iGrp~L--------------------~~la~----------------------------~ 317 (366)
T PLN02979 286 GVRRGTDVFKALALGASGIFIGRPVV--------------------FSLAA----------------------------E 317 (366)
T ss_pred CcCcHHHHHHHHHcCCCEEEEcHHHH--------------------HHHHh----------------------------c
Confidence 99999999999999999999999984 22111 1
Q ss_pred cceeEEeeCCchhchHHHHHhhhhhhCcccCcCcHHHHHHh
Q psy1056 518 GVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRAM 558 (590)
Q Consensus 518 g~~~~~~~~~~~~~~~~~~~~~l~~~m~~~G~~~i~~l~~~ 558 (590)
|.+ .+.++|+.|+.+|+.+|.++||++++||++.
T Consensus 318 G~~-------Gv~~~l~~l~~El~~~m~l~G~~~i~el~~~ 351 (366)
T PLN02979 318 GEA-------GVRKVLQMLRDEFELTMALSGCRSLKEISRN 351 (366)
T ss_pred CHH-------HHHHHHHHHHHHHHHHHHHhCCCCHHHhChh
Confidence 111 2788899999999999999999999999876
|
|
| >cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.82 E-value=3e-20 Score=192.23 Aligned_cols=138 Identities=15% Similarity=0.244 Sum_probs=115.4
Q ss_pred hHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEec
Q psy1056 357 YQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIAD 436 (590)
Q Consensus 357 ~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~ 436 (590)
...+.+++|++.+ +.|+++|+|.+.++|+++.++|+|+|+|+.+.+++ +.+...++.++.++++.+ ++|||+|
T Consensus 223 ~~w~~i~~ir~~~-~~pviiKgV~~~eda~~a~~~G~d~I~VSnhGGrq---ld~~~~~~~~L~ei~~~~---~~~vi~d 295 (361)
T cd04736 223 FNWQDLRWLRDLW-PHKLLVKGIVTAEDAKRCIELGADGVILSNHGGRQ---LDDAIAPIEALAEIVAAT---YKPVLID 295 (361)
T ss_pred CCHHHHHHHHHhC-CCCEEEecCCCHHHHHHHHHCCcCEEEECCCCcCC---CcCCccHHHHHHHHHHHh---CCeEEEe
Confidence 3457899999999 68999999999999999999999999999998887 543222666777776553 5999999
Q ss_pred CCCCCHHHHHHHHHcCCCEEEECccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeec
Q psy1056 437 GGVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVA 516 (590)
Q Consensus 437 GGi~~~~di~kalalGA~~v~~g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (590)
|||++|.||+|||+|||++|++|++|. ||++..
T Consensus 296 GGIr~g~Dv~KALaLGA~aV~iGr~~l--------------------~~la~~--------------------------- 328 (361)
T cd04736 296 SGIRRGSDIVKALALGANAVLLGRATL--------------------YGLAAR--------------------------- 328 (361)
T ss_pred CCCCCHHHHHHHHHcCCCEEEECHHHH--------------------HHHHhc---------------------------
Confidence 999999999999999999999999993 443321
Q ss_pred ccceeEEeeCCchhchHHHHHhhhhhhCcccCcCcHHHHH
Q psy1056 517 QGVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLR 556 (590)
Q Consensus 517 eg~~~~~~~~~~~~~~~~~~~~~l~~~m~~~G~~~i~~l~ 556 (590)
|. ..+.++++.|+.+|+.+|+++||++++||.
T Consensus 329 -G~-------~gv~~~l~~l~~el~~~m~l~G~~~i~~l~ 360 (361)
T cd04736 329 -GE-------AGVSEVLRLLKEEIDRTLALIGCPDIASLT 360 (361)
T ss_pred -CH-------HHHHHHHHHHHHHHHHHHHHhCCCCHHHcC
Confidence 11 127888999999999999999999999985
|
MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.3e-20 Score=193.63 Aligned_cols=139 Identities=21% Similarity=0.230 Sum_probs=119.5
Q ss_pred HHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecC
Q psy1056 359 IEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADG 437 (590)
Q Consensus 359 l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~G 437 (590)
.+.++++++.+ ++|+++|+|.+.++|+.+.++|+|+|+|+.+.+|. . +.+. ++.+|.++++.+.. ++|||+||
T Consensus 242 W~~i~~lr~~~-~~pvivKgV~~~~dA~~a~~~G~d~I~vsnhGGr~---~-d~~~~t~~~L~ei~~~~~~-~~~vi~dG 315 (383)
T cd03332 242 WEDLAFLREWT-DLPIVLKGILHPDDARRAVEAGVDGVVVSNHGGRQ---V-DGSIAALDALPEIVEAVGD-RLTVLFDS 315 (383)
T ss_pred HHHHHHHHHhc-CCCEEEecCCCHHHHHHHHHCCCCEEEEcCCCCcC---C-CCCcCHHHHHHHHHHHhcC-CCeEEEeC
Confidence 47899999998 79999999999999999999999999999998887 4 3466 88889999877643 59999999
Q ss_pred CCCCHHHHHHHHHcCCCEEEECccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecc
Q psy1056 438 GVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQ 517 (590)
Q Consensus 438 Gi~~~~di~kalalGA~~v~~g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~e 517 (590)
|||+|.|++|||+|||++|++|++|. ||++..++
T Consensus 316 GIr~G~Dv~KALaLGA~~v~iGr~~l--------------------~~l~~~G~-------------------------- 349 (383)
T cd03332 316 GVRTGADIMKALALGAKAVLIGRPYA--------------------YGLALGGE-------------------------- 349 (383)
T ss_pred CcCcHHHHHHHHHcCCCEEEEcHHHH--------------------HHHHhccH--------------------------
Confidence 99999999999999999999999993 44321111
Q ss_pred cceeEEeeCCchhchHHHHHhhhhhhCcccCcCcHHHHHHh
Q psy1056 518 GVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRAM 558 (590)
Q Consensus 518 g~~~~~~~~~~~~~~~~~~~~~l~~~m~~~G~~~i~~l~~~ 558 (590)
..|.++|+.|+.||+.+|+++||+++.||++.
T Consensus 350 ---------~gv~~~l~~l~~El~~~m~l~G~~~i~~l~~~ 381 (383)
T cd03332 350 ---------DGVEHVLRNLLAELDLTMGLAGIRSIAELTRD 381 (383)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHCCCCHHHhCcc
Confidence 12788899999999999999999999999753
|
LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer. |
| >TIGR02708 L_lactate_ox L-lactate oxidase | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.7e-20 Score=191.19 Aligned_cols=139 Identities=22% Similarity=0.235 Sum_probs=117.3
Q ss_pred HHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecC
Q psy1056 359 IEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADG 437 (590)
Q Consensus 359 l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~G 437 (590)
.+.++++++.+ ++|+++|+|.+.++|+.+.++|+|+|+|+++.+|+ +.+ +. +..+|.++++... .++|||+||
T Consensus 217 w~~i~~l~~~~-~~PvivKGv~~~eda~~a~~~Gvd~I~VS~HGGrq---~~~-~~a~~~~L~ei~~av~-~~i~vi~dG 290 (367)
T TIGR02708 217 PRDIEEIAGYS-GLPVYVKGPQCPEDADRALKAGASGIWVTNHGGRQ---LDG-GPAAFDSLQEVAEAVD-KRVPIVFDS 290 (367)
T ss_pred HHHHHHHHHhc-CCCEEEeCCCCHHHHHHHHHcCcCEEEECCcCccC---CCC-CCcHHHHHHHHHHHhC-CCCcEEeeC
Confidence 36799999988 79999999999999999999999999999999888 543 33 5677888876653 259999999
Q ss_pred CCCCHHHHHHHHHcCCCEEEECccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecc
Q psy1056 438 GVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQ 517 (590)
Q Consensus 438 Gi~~~~di~kalalGA~~v~~g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~e 517 (590)
||+++.|++|||++||++||+|++++ ||++..
T Consensus 291 GIr~g~Dv~KaLalGAd~V~igR~~l--------------------~~la~~---------------------------- 322 (367)
T TIGR02708 291 GVRRGQHVFKALASGADLVALGRPVI--------------------YGLALG---------------------------- 322 (367)
T ss_pred CcCCHHHHHHHHHcCCCEEEEcHHHH--------------------HHHHhc----------------------------
Confidence 99999999999999999999999983 342211
Q ss_pred cceeEEeeCCchhchHHHHHhhhhhhCcccCcCcHHHHHHh
Q psy1056 518 GVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRAM 558 (590)
Q Consensus 518 g~~~~~~~~~~~~~~~~~~~~~l~~~m~~~G~~~i~~l~~~ 558 (590)
|.+ .+.++|++|+.+|+.+|+++||++++||++.
T Consensus 323 G~~-------gv~~~l~~l~~El~~~M~l~G~~~i~eL~~~ 356 (367)
T TIGR02708 323 GSQ-------GARQVFEYLNKELKRVMQLTGTQTIEDVKGF 356 (367)
T ss_pred CHH-------HHHHHHHHHHHHHHHHHHHhCCCCHHHhCcc
Confidence 111 2778899999999999999999999999875
|
Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence. |
| >PLN02535 glycolate oxidase | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.1e-19 Score=186.46 Aligned_cols=139 Identities=19% Similarity=0.231 Sum_probs=118.1
Q ss_pred HHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecC
Q psy1056 359 IEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADG 437 (590)
Q Consensus 359 l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~G 437 (590)
.+.++++++.+ ++|+++|+|.++++|+.+.++|+|+|+|+.+.+|. .+|+. +..++.++++.+.. ++|||++|
T Consensus 212 W~~i~~lr~~~-~~PvivKgV~~~~dA~~a~~~GvD~I~vsn~GGr~----~d~~~~t~~~L~ev~~av~~-~ipVi~dG 285 (364)
T PLN02535 212 WKDIEWLRSIT-NLPILIKGVLTREDAIKAVEVGVAGIIVSNHGARQ----LDYSPATISVLEEVVQAVGG-RVPVLLDG 285 (364)
T ss_pred HHHHHHHHhcc-CCCEEEecCCCHHHHHHHHhcCCCEEEEeCCCcCC----CCCChHHHHHHHHHHHHHhc-CCCEEeeC
Confidence 47899999987 79999999999999999999999999998888776 35677 78888888776532 59999999
Q ss_pred CCCCHHHHHHHHHcCCCEEEECccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecc
Q psy1056 438 GVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQ 517 (590)
Q Consensus 438 Gi~~~~di~kalalGA~~v~~g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~e 517 (590)
||+++.|++|||+|||++|++|++|. ||+++.+.
T Consensus 286 GIr~g~Dv~KALalGA~aV~vGr~~l--------------------~~l~~~g~-------------------------- 319 (364)
T PLN02535 286 GVRRGTDVFKALALGAQAVLVGRPVI--------------------YGLAAKGE-------------------------- 319 (364)
T ss_pred CCCCHHHHHHHHHcCCCEEEECHHHH--------------------hhhhhccH--------------------------
Confidence 99999999999999999999999994 33221111
Q ss_pred cceeEEeeCCchhchHHHHHhhhhhhCcccCcCcHHHHHHh
Q psy1056 518 GVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRAM 558 (590)
Q Consensus 518 g~~~~~~~~~~~~~~~~~~~~~l~~~m~~~G~~~i~~l~~~ 558 (590)
..+.+.++.+..+|+.+|.++|+.+++||+..
T Consensus 320 ---------~gv~~~l~~l~~el~~~m~l~G~~~i~el~~~ 351 (364)
T PLN02535 320 ---------DGVRKVIEMLKDELEITMALSGCPSVKDITRS 351 (364)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHhCCCCHHHhhhh
Confidence 12777899999999999999999999999876
|
|
| >cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.7e-19 Score=183.82 Aligned_cols=139 Identities=18% Similarity=0.227 Sum_probs=115.8
Q ss_pred HHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCcccccc-chhHHHHHHHHHhcC--CCcEEe
Q psy1056 359 IEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGR-NGTAVYRVAEYASRR--GVPVIA 435 (590)
Q Consensus 359 l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~--~v~iia 435 (590)
.+.++++++.+ ++|+++|++.+.++|+.+.++|+|+|+|+.+.++. ..+ .. +..++.++.+..... ++|||+
T Consensus 202 ~~~i~~l~~~~-~~PvivKgv~~~~dA~~a~~~G~d~I~vsnhgG~~---~d~-~~~~~~~L~~i~~~~~~~~~~~~vi~ 276 (344)
T cd02922 202 WDDIKWLRKHT-KLPIVLKGVQTVEDAVLAAEYGVDGIVLSNHGGRQ---LDT-APAPIEVLLEIRKHCPEVFDKIEVYV 276 (344)
T ss_pred HHHHHHHHHhc-CCcEEEEcCCCHHHHHHHHHcCCCEEEEECCCccc---CCC-CCCHHHHHHHHHHHHHHhCCCceEEE
Confidence 47799999988 79999999999999999999999999998887776 543 44 777788887754332 599999
Q ss_pred cCCCCCHHHHHHHHHcCCCEEEECccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceee
Q psy1056 436 DGGVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKV 515 (590)
Q Consensus 436 ~GGi~~~~di~kalalGA~~v~~g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~ 515 (590)
+|||++|.|++|||+|||++|++|++|.. +++..
T Consensus 277 ~GGIr~G~Dv~kalaLGA~aV~iG~~~l~--------------------~l~~~-------------------------- 310 (344)
T cd02922 277 DGGVRRGTDVLKALCLGAKAVGLGRPFLY--------------------ALSAY-------------------------- 310 (344)
T ss_pred eCCCCCHHHHHHHHHcCCCEEEECHHHHH--------------------HHhhc--------------------------
Confidence 99999999999999999999999999942 22110
Q ss_pred cccceeEEeeCCchhchHHHHHhhhhhhCcccCcCcHHHHHH
Q psy1056 516 AQGVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRA 557 (590)
Q Consensus 516 ~eg~~~~~~~~~~~~~~~~~~~~~l~~~m~~~G~~~i~~l~~ 557 (590)
| ...|.++++.|..+|+..|.++||++++||+.
T Consensus 311 --G-------~~gv~~~l~~l~~EL~~~m~l~G~~~i~~l~~ 343 (344)
T cd02922 311 --G-------EEGVEKAIQILKDEIETTMRLLGVTSLDQLGP 343 (344)
T ss_pred --c-------HHHHHHHHHHHHHHHHHHHHHhCCCCHHHhCc
Confidence 1 01277889999999999999999999999964
|
FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit. |
| >PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.5e-18 Score=183.39 Aligned_cols=272 Identities=25% Similarity=0.340 Sum_probs=178.8
Q ss_pred CcCCCCCHHHHHHHHHhhhcccCccccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccccccccCC
Q psy1056 1 IIHHNCTPEYQANEVLKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENS 80 (590)
Q Consensus 1 ~~~~~~~~~~~~~~~~~vk~~~~~m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Did~l~~~ 80 (590)
|||+|||+|.|.+++++||+++++|+.+|++++|++|+.+|+++|.+++++.+||+|++.+.++++|++|.+|+++..
T Consensus 78 vi~~~~~~e~~~~~v~kvk~~e~g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~-- 155 (495)
T PTZ00314 78 VIHNNCSIEEQVEEVRKVKRFENGFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVK-- 155 (495)
T ss_pred EecCCCCHHHHHHHHhhccccccccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhcc--
Confidence 689999999999999999999999999999999999999999999999999999999732236999999999654321
Q ss_pred CCCCCCccCCcccccccccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHHcCCcEEEEcCCCC
Q psy1056 81 ANMDLKIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQG 160 (590)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~~~~dvv~~~~~~~ 160 (590)
+...++.+
T Consensus 156 ---------~~~~~V~d--------------------------------------------------------------- 163 (495)
T PTZ00314 156 ---------DKSTPVSE--------------------------------------------------------------- 163 (495)
T ss_pred ---------cCCCCHHH---------------------------------------------------------------
Confidence 00011110
Q ss_pred chHHHHHHHHHhhhcCCCcccccc--cccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecc
Q psy1056 161 NSIYQIEMIKYIKKEYPDMQVIGG--NVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSR 235 (590)
Q Consensus 161 ~~~~~~~~v~~vk~~~~~~~im~~--~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~ 235 (590)
+|+. ++.+ ++++.++++.| .+++...+||+|+ +++++|+||.+
T Consensus 164 --------------------iMt~~~~lvtv~~~~sl~eAl~lm---------~e~~i~~LPVVd~---~g~liGIIT~~ 211 (495)
T PTZ00314 164 --------------------VMTPREKLVVGNTPISLEEANEVL---------RESRKGKLPIVND---NGELVALVSRS 211 (495)
T ss_pred --------------------hhCCcCCceEeCCCCCHHHHHHHH---------HHcCCCeEEEEcC---CCcEEEEEEeh
Confidence 2221 2212 67788899999 9999999999998 79999999999
Q ss_pred hhhccccccccccchhhccccCCCee---EEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCCCCCC
Q psy1056 236 DVDFLENSANMDLKIEKVMTNVNEII---SAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSS 312 (590)
Q Consensus 236 Dl~~~~~~~~~~~~V~~im~~~~~~~---tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~~~~~ 312 (590)
|+....... ...+|--- .+. .+.....-.+-.+.+.+.+++.+-|--.+|+-... .+.++.+..
T Consensus 212 DIl~~~~~p---~a~~D~~G---rL~Vgaavg~~~~~~~~~~~l~~ag~d~i~id~a~G~s~~~---~~~i~~ik~---- 278 (495)
T PTZ00314 212 DLKKNRGYP---NASLDSNG---QLLVGAAISTRPEDIERAAALIEAGVDVLVVDSSQGNSIYQ---IDMIKKLKS---- 278 (495)
T ss_pred HhhhcccCc---hhhhccCC---CEEEEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCchHH---HHHHHHHHh----
Confidence 998332211 00111000 111 22222223555666778888765443234432222 122332221
Q ss_pred cccCCceEEeE-eeccchhHHHHHHHHHHcCCcEEEEecCCCc---h-------hhHHHH---HHHHHHhCCCceEEe-c
Q psy1056 313 KDENNQLIVGA-AIGTREADKNRLKLLSQAGVDVVILDSSQGN---S-------IYQIEM---IKFIKKEYPDMQVIG-G 377 (590)
Q Consensus 313 ~d~~~~l~v~a-~i~~~~~~~e~~~~li~~gad~i~V~~~~G~---~-------~~~l~~---i~~i~~~~~~vpvi~-g 377 (590)
..+.+.+.+ ++ ...+.+..++++|+|++.+....|. . ...+.. +..+.+.+ ++|+|+ |
T Consensus 279 --~~~~~~v~aG~V----~t~~~a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~-~v~vIadG 351 (495)
T PTZ00314 279 --NYPHVDIIAGNV----VTADQAKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARER-GVPCIADG 351 (495)
T ss_pred --hCCCceEEECCc----CCHHHHHHHHHcCCCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhhc-CCeEEecC
Confidence 112233333 22 2346777899999999977433321 0 011223 33333444 689996 7
Q ss_pred cccCcHHHHHHHHCCCCEEEE
Q psy1056 378 NVLFGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 378 ~v~s~~~a~~l~~~Gvd~i~v 398 (590)
.+.+..++.+++++||+++-+
T Consensus 352 Gi~~~~di~kAla~GA~~Vm~ 372 (495)
T PTZ00314 352 GIKNSGDICKALALGADCVML 372 (495)
T ss_pred CCCCHHHHHHHHHcCCCEEEE
Confidence 788999999999999999954
|
|
| >cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.6e-18 Score=179.90 Aligned_cols=143 Identities=21% Similarity=0.205 Sum_probs=113.9
Q ss_pred hhHHHHHHHHHHhCCCceEEeccc---cCcHHHHHHHHCCCCEEEEccccc---------ccC-------CCcccccc-c
Q psy1056 356 IYQIEMIKFIKKEYPDMQVIGGNV---LFGYQPRATLLNFIYQIEMIKFIK---------KEY-------PDMQVIGR-N 415 (590)
Q Consensus 356 ~~~l~~i~~i~~~~~~vpvi~g~v---~s~~~a~~l~~~Gvd~i~v~~~~~---------~~~-------~~~~~~g~-~ 415 (590)
..+++.++.+++.+ ++||++|.+ .+.++|+.|.++|+|+|+|+...+ |.. ..+.+||+ +
T Consensus 164 ~~~~~~i~~l~~~~-~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t 242 (326)
T cd02811 164 RGWLERIEELVKAL-SVPVIVKEVGFGISRETAKRLADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADWGIPT 242 (326)
T ss_pred HHHHHHHHHHHHhc-CCCEEEEecCCCCCHHHHHHHHHcCCCEEEECCCCCCcccccccccccccccccccccccccccH
Confidence 34678999999988 799999887 589999999999999999843211 110 11457888 8
Q ss_pred hhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCCCCCCCceEeecCeeeeeeeccccHHHHhcc
Q psy1056 416 GTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRK 495 (590)
Q Consensus 416 ~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~ 495 (590)
..++.++++.+. ++|||++|||+++.|++|||++|||+|++|++|...- .
T Consensus 243 ~~~l~~~~~~~~--~ipIiasGGIr~~~dv~kal~lGAd~V~i~~~~L~~~--------------------------~-- 292 (326)
T cd02811 243 AASLLEVRSALP--DLPLIASGGIRNGLDIAKALALGADLVGMAGPFLKAA--------------------------L-- 292 (326)
T ss_pred HHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHHHhCCCEEEEcHHHHHHH--------------------------h--
Confidence 888888876543 5999999999999999999999999999999883110 0
Q ss_pred cCCCcccchhhhccccceeecccceeEEeeCCchhchHHHHHhhhhhhCcccCcCcHHHHHH
Q psy1056 496 DGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRA 557 (590)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~~~~~~~~~~~l~~~m~~~G~~~i~~l~~ 557 (590)
. |.+ .+.++|+.|..+||..|+++|++|+.|||+
T Consensus 293 --------------------~-g~~-------~~~~~i~~~~~el~~~m~~~G~~si~el~~ 326 (326)
T cd02811 293 --------------------E-GEE-------AVIETIEQIIEELRTAMFLTGAKNLAELKQ 326 (326)
T ss_pred --------------------c-CHH-------HHHHHHHHHHHHHHHHHHHhCCCCHHHhcC
Confidence 0 111 267789999999999999999999999974
|
Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway. |
| >COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.5e-19 Score=185.66 Aligned_cols=140 Identities=26% Similarity=0.241 Sum_probs=121.5
Q ss_pred HHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEec
Q psy1056 358 QIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIAD 436 (590)
Q Consensus 358 ~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~ 436 (590)
..+.+.++++.+ ..|++.++|.+++|+..+...|+++|.++.+.+| +.+||+ |+.+|.+++++... .++||+|
T Consensus 206 ~ked~~~i~~~~-~~~lv~kGV~~~~D~~~a~~tg~~~I~vsnhggr----qlD~g~st~~~L~ei~~av~~-~~~vi~d 279 (360)
T COG1304 206 SKEDGAGISKEW-AGPLVLKGILAPEDAAGAGGTGADGIEVSNHGGR----QLDWGISTADSLPEIVEAVGD-RIEVIAD 279 (360)
T ss_pred cHHHHhHHHHhc-CCcHHHhCCCCHHHHHhhccCCceEEEEEcCCCc----cccCCCChHHHHHHHHHHhCC-CeEEEec
Confidence 357788899998 7899999999999999999999999999988875 688999 99999999988753 4999999
Q ss_pred CCCCCHHHHHHHHHcCCCEEEECccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeec
Q psy1056 437 GGVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVA 516 (590)
Q Consensus 437 GGi~~~~di~kalalGA~~v~~g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (590)
||||+|.|++|||||||++|++|++|+ ||++.
T Consensus 280 GGiR~G~Dv~KAlALGA~~v~igrp~L--------------------~~l~~---------------------------- 311 (360)
T COG1304 280 GGIRSGLDVAKALALGADAVGIGRPFL--------------------YGLAA---------------------------- 311 (360)
T ss_pred CCCCCHHHHHHHHHhCCchhhhhHHHH--------------------HHHHh----------------------------
Confidence 999999999999999999999999993 33111
Q ss_pred ccceeEEeeCCchhchHHHHHhhhhhhCcccCcCcHHHHHHh
Q psy1056 517 QGVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRAM 558 (590)
Q Consensus 517 eg~~~~~~~~~~~~~~~~~~~~~l~~~m~~~G~~~i~~l~~~ 558 (590)
.|. ..|.++|+.|..+|+.+|++|||+||+||++.
T Consensus 312 ~g~-------~GV~~~le~~~~El~~~M~L~G~~~i~el~~~ 346 (360)
T COG1304 312 GGE-------AGVERVLEIIRKELKIAMALTGAKNIEELKRV 346 (360)
T ss_pred ccH-------HHHHHHHHHHHHHHHHHHHhcCCCcHHHhccC
Confidence 111 12888899999999999999999999999976
|
|
| >PRK05437 isopentenyl pyrophosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=4e-18 Score=178.31 Aligned_cols=145 Identities=21% Similarity=0.204 Sum_probs=116.6
Q ss_pred hhHHHHHHHHHHhCCCceEEeccc---cCcHHHHHHHHCCCCEEEEccccc---------ccC-----CCcccccc-chh
Q psy1056 356 IYQIEMIKFIKKEYPDMQVIGGNV---LFGYQPRATLLNFIYQIEMIKFIK---------KEY-----PDMQVIGR-NGT 417 (590)
Q Consensus 356 ~~~l~~i~~i~~~~~~vpvi~g~v---~s~~~a~~l~~~Gvd~i~v~~~~~---------~~~-----~~~~~~g~-~~~ 417 (590)
..+++.++++++.+ ++||++|.+ .+.++|+.|.++|+|+|+|+...+ |.. ..+.+||+ +..
T Consensus 172 ~~~le~i~~i~~~~-~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~Vsg~GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~ 250 (352)
T PRK05437 172 RGWLDNIAEIVSAL-PVPVIVKEVGFGISKETAKRLADAGVKAIDVAGAGGTSWAAIENYRARDDRLASYFADWGIPTAQ 250 (352)
T ss_pred HHHHHHHHHHHHhh-CCCEEEEeCCCCCcHHHHHHHHHcCCCEEEECCCCCCCccchhhhhhhccccccccccccCCHHH
Confidence 34678999999988 799999888 699999999999999999944322 321 12567899 888
Q ss_pred HHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccC
Q psy1056 418 AVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDG 497 (590)
Q Consensus 418 ~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~ 497 (590)
++.++++.. .++|||++|||+++.|++|+|++|||+|++|++|... +.
T Consensus 251 ~l~~i~~~~--~~ipvia~GGI~~~~dv~k~l~~GAd~v~ig~~~l~~-------------------------~~----- 298 (352)
T PRK05437 251 SLLEARSLL--PDLPIIASGGIRNGLDIAKALALGADAVGMAGPFLKA-------------------------AL----- 298 (352)
T ss_pred HHHHHHHhc--CCCeEEEECCCCCHHHHHHHHHcCCCEEEEhHHHHHH-------------------------HH-----
Confidence 888887653 3599999999999999999999999999999988311 00
Q ss_pred CCcccchhhhccccceeecccceeEEeeCCchhchHHHHHhhhhhhCcccCcCcHHHHHHh
Q psy1056 498 GAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRAM 558 (590)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~~~~~~~~~~~l~~~m~~~G~~~i~~l~~~ 558 (590)
..|. ..+.++++.|..+||..|.++|+++++||++.
T Consensus 299 ------------------~~g~-------~~v~~~i~~~~~eL~~~m~~~G~~~i~eL~~~ 334 (352)
T PRK05437 299 ------------------EGGE-------EAVIELIEQWIEELKIAMFLTGAKNIAELRKV 334 (352)
T ss_pred ------------------hccH-------HHHHHHHHHHHHHHHHHHHHhCCCCHHHhCCC
Confidence 0111 12778899999999999999999999999876
|
|
| >PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.9e-17 Score=178.59 Aligned_cols=267 Identities=28% Similarity=0.420 Sum_probs=188.1
Q ss_pred CcCCCCCHHHHHHHHHhhhcccCccccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccccccccCC
Q psy1056 1 IIHHNCTPEYQANEVLKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENS 80 (590)
Q Consensus 1 ~~~~~~~~~~~~~~~~~vk~~~~~m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Did~l~~~ 80 (590)
+||+|||++.+.+.+++||+++++|.++++++++++|+.+|+++|.+++++++||+|++ ++++|++|.+|+....
T Consensus 69 ~i~~~~~~e~~~~~I~~vk~~~dim~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~---g~lvGiVt~~DL~~~~-- 143 (486)
T PRK05567 69 VIHKNMSIEEQAEEVRKVKRSESGVVTDPVTVTPDTTLAEALALMARYGISGVPVVDEN---GKLVGIITNRDVRFET-- 143 (486)
T ss_pred EecCCCCHHHHHHHHHHhhhhhhcccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccC---CEEEEEEEHHHhhhcc--
Confidence 58999999999999999999999999999999999999999999999999999999987 8999999999542210
Q ss_pred CCCCCCccCCcccccccccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHHcCCcEEEEcCCCC
Q psy1056 81 ANMDLKIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQG 160 (590)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~~~~dvv~~~~~~~ 160 (590)
+...++.
T Consensus 144 ---------~~~~~V~---------------------------------------------------------------- 150 (486)
T PRK05567 144 ---------DLSQPVS---------------------------------------------------------------- 150 (486)
T ss_pred ---------cCCCcHH----------------------------------------------------------------
Confidence 0000010
Q ss_pred chHHHHHHHHHhhhcCCCccccc-ccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecch
Q psy1056 161 NSIYQIEMIKYIKKEYPDMQVIG-GNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRD 236 (590)
Q Consensus 161 ~~~~~~~~v~~vk~~~~~~~im~-~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~D 236 (590)
++|. .++.+ ++++.++++.| .++++..+||+|+ +++++|+||.+|
T Consensus 151 -------------------dim~~~~~v~v~~~~sl~eal~~m---------~~~~~~~lpVVDe---~g~lvGiIT~~D 199 (486)
T PRK05567 151 -------------------EVMTKERLVTVPEGTTLEEALELL---------HEHRIEKLPVVDD---NGRLKGLITVKD 199 (486)
T ss_pred -------------------HHcCCCCCEEECCCCCHHHHHHHH---------HHcCCCEEEEEcC---CCcEEEEEEhHH
Confidence 0222 12211 67788899999 8999999999998 799999999999
Q ss_pred hhcccccc------ccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcC-CCceEEEEeecccccccCCC
Q psy1056 237 VDFLENSA------NMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILND-KGELIALIARTDLKKSRDYP 309 (590)
Q Consensus 237 l~~~~~~~------~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~-~g~l~Giit~~dll~~~~~~ 309 (590)
+....... .....|...|.. .+ .-.+..+.|.+.+++.+ ++|. +|+..++++.-+.++... +
T Consensus 200 Ll~~~~~p~a~~d~~g~l~V~aai~~-------~~--~~~e~a~~L~~agvdvi-vvD~a~g~~~~vl~~i~~i~~~~-p 268 (486)
T PRK05567 200 IEKAEEFPNACKDEQGRLRVGAAVGV-------GA--DNEERAEALVEAGVDVL-VVDTAHGHSEGVLDRVREIKAKY-P 268 (486)
T ss_pred hhhhhhCCCcccccCCCEEEEeeccc-------Cc--chHHHHHHHHHhCCCEE-EEECCCCcchhHHHHHHHHHhhC-C
Confidence 97321110 112334445543 22 22678888899999955 6654 688888887766665422 0
Q ss_pred CCCcccCCceEEeEeeccchhHHHHHHHHHHcCCcEEEEecCCCc----------hhhHHHHHHHHHHhC--CCceEEe-
Q psy1056 310 DSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGN----------SIYQIEMIKFIKKEY--PDMQVIG- 376 (590)
Q Consensus 310 ~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~gad~i~V~~~~G~----------~~~~l~~i~~i~~~~--~~vpvi~- 376 (590)
.-. ++..++ ...+.+..+.++|++++.+-...|. ....++.+..+++.. .++|+|+
T Consensus 269 ------~~~-vi~g~v----~t~e~a~~l~~aGad~i~vg~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~viad 337 (486)
T PRK05567 269 ------DVQ-IIAGNV----ATAEAARALIEAGADAVKVGIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVIAD 337 (486)
T ss_pred ------CCC-EEEecc----CCHHHHHHHHHcCCCEEEECCCCCccccceeecCCCcCHHHHHHHHHHHhccCCCeEEEc
Confidence 111 122233 2356778888999999976322211 111244554444421 2689997
Q ss_pred ccccCcHHHHHHHHCCCCEEEE
Q psy1056 377 GNVLFGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 377 g~v~s~~~a~~l~~~Gvd~i~v 398 (590)
|++.++.++.+++.+|||++-+
T Consensus 338 GGi~~~~di~kAla~GA~~v~~ 359 (486)
T PRK05567 338 GGIRYSGDIAKALAAGASAVML 359 (486)
T ss_pred CCCCCHHHHHHHHHhCCCEEEE
Confidence 7788999999999999999955
|
|
| >cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.9e-18 Score=179.21 Aligned_cols=138 Identities=25% Similarity=0.244 Sum_probs=115.9
Q ss_pred HHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecC
Q psy1056 359 IEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADG 437 (590)
Q Consensus 359 l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~G 437 (590)
.+.++++++.+ ++|+++|++.++++|+.+.++|+|+|.|+.+.+++ ..+ +. +...+.++++... .++|||++|
T Consensus 210 ~~~l~~lr~~~-~~PvivKgv~~~~dA~~a~~~G~d~I~vsnhGGr~---ld~-~~~~~~~l~~i~~a~~-~~i~vi~dG 283 (351)
T cd04737 210 PADIEFIAKIS-GLPVIVKGIQSPEDADVAINAGADGIWVSNHGGRQ---LDG-GPASFDSLPEIAEAVN-HRVPIIFDS 283 (351)
T ss_pred HHHHHHHHHHh-CCcEEEecCCCHHHHHHHHHcCCCEEEEeCCCCcc---CCC-CchHHHHHHHHHHHhC-CCCeEEEEC
Confidence 46789999988 79999999999999999999999999999888777 433 33 5667777766553 259999999
Q ss_pred CCCCHHHHHHHHHcCCCEEEECccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecc
Q psy1056 438 GVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQ 517 (590)
Q Consensus 438 Gi~~~~di~kalalGA~~v~~g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~e 517 (590)
||+++.|++|||++||++|++|++|. ||++..++
T Consensus 284 GIr~g~Di~kaLalGA~~V~iGr~~l--------------------~~la~~G~-------------------------- 317 (351)
T cd04737 284 GVRRGEHVFKALASGADAVAVGRPVL--------------------YGLALGGA-------------------------- 317 (351)
T ss_pred CCCCHHHHHHHHHcCCCEEEECHHHH--------------------HHHhhchH--------------------------
Confidence 99999999999999999999999983 55443221
Q ss_pred cceeEEeeCCchhchHHHHHhhhhhhCcccCcCcHHHHHH
Q psy1056 518 GVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRA 557 (590)
Q Consensus 518 g~~~~~~~~~~~~~~~~~~~~~l~~~m~~~G~~~i~~l~~ 557 (590)
..+.++++.|..+|+.+|.++|+++++||++
T Consensus 318 ---------~gv~~~l~~l~~El~~~m~l~G~~~i~el~~ 348 (351)
T cd04737 318 ---------QGVASVLEHLNKELKIVMQLAGTRTIEDVKR 348 (351)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHCCCCHHHhCC
Confidence 1278889999999999999999999999975
|
LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.9e-18 Score=174.16 Aligned_cols=165 Identities=20% Similarity=0.263 Sum_probs=131.6
Q ss_pred hHHHHHHHHHHcCCcEEEEec--CC-CchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccC
Q psy1056 330 ADKNRLKLLSQAGVDVVILDS--SQ-GNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEY 406 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~--~~-G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~ 406 (590)
...+.++.+.+.|++++.++. ++ |.+ ...+.++++++.+ ++|+++|++.+.++|+.+.++|+|+|+|+.+.++.
T Consensus 130 ~~~~~i~~~~~~g~~~i~l~~~~p~~~~~-~~~~~i~~l~~~~-~~pvivK~v~s~~~a~~a~~~G~d~I~v~~~gG~~- 206 (299)
T cd02809 130 ITEDLLRRAEAAGYKALVLTVDTPVLGRR-LTWDDLAWLRSQW-KGPLILKGILTPEDALRAVDAGADGIVVSNHGGRQ- 206 (299)
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCCCC-CCHHHHHHHHHhc-CCCEEEeecCCHHHHHHHHHCCCCEEEEcCCCCCC-
Confidence 344566777788999887754 33 333 3457899999988 58999999999999999999999999888766554
Q ss_pred CCcccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCCCCCCCceEeecCeeeeeeec
Q psy1056 407 PDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRG 485 (590)
Q Consensus 407 ~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~~es~~~~~~~~g~~~k~~~g 485 (590)
.+||. +...+.++++.+.. ++|||++|||+++.|++|||++|||+|++|++|. ++
T Consensus 207 ---~~~g~~~~~~l~~i~~~~~~-~ipvia~GGI~~~~d~~kal~lGAd~V~ig~~~l--------------------~~ 262 (299)
T cd02809 207 ---LDGAPATIDALPEIVAAVGG-RIEVLLDGGIRRGTDVLKALALGADAVLIGRPFL--------------------YG 262 (299)
T ss_pred ---CCCCcCHHHHHHHHHHHhcC-CCeEEEeCCCCCHHHHHHHHHcCCCEEEEcHHHH--------------------HH
Confidence 34677 88888888776532 5999999999999999999999999999999883 11
Q ss_pred cccHHHHhcccCCCcccchhhhccccceeecccceeEEeeCCchhchHHHHHhhhhhhCcccCcCcHHHHH
Q psy1056 486 MGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLR 556 (590)
Q Consensus 486 ~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~~~~~~~~~~~l~~~m~~~G~~~i~~l~ 556 (590)
.. ..|. ..+.++++.|+.+|+..|.++|++|++||+
T Consensus 263 ~~----------------------------~~g~-------~~v~~~i~~l~~el~~~m~~~G~~~i~~l~ 298 (299)
T cd02809 263 LA----------------------------AGGE-------AGVAHVLEILRDELERAMALLGCASLADLD 298 (299)
T ss_pred HH----------------------------hcCH-------HHHHHHHHHHHHHHHHHHHHHCCCCHHHhC
Confidence 00 0111 126778999999999999999999999996
|
This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. |
| >PRK07807 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.6e-17 Score=175.94 Aligned_cols=268 Identities=15% Similarity=0.156 Sum_probs=181.9
Q ss_pred CcCCCCCHHHHHHHHHhhhcccCccccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccccccccCC
Q psy1056 1 IIHHNCTPEYQANEVLKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENS 80 (590)
Q Consensus 1 ~~~~~~~~~~~~~~~~~vk~~~~~m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Did~l~~~ 80 (590)
|||+||+++.|.+.+++||.. ++|.++|+++++++|+.+|+++|.+++++++||+|++ ++++|++|.+|+...
T Consensus 72 vih~nl~~~~q~~~l~~VKv~-~iMi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~---gklvGIVT~rDL~~~--- 144 (479)
T PRK07807 72 VLPQDIPIDVVAEVVAWVKSR-DLVFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDEE---GRPVGVVTEADCAGV--- 144 (479)
T ss_pred EeeCCCCHHHHHHHHhhcccc-cccccCCeEECCCCCHHHHHHHHHhcCCceEEEECCC---CeEEEEEeHHHHhcC---
Confidence 689999999999999999996 7899999999999999999999999999999999987 799999999954221
Q ss_pred CCCCCCccCCcccccccccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHHcCCcEEEEcCCCC
Q psy1056 81 ANMDLKIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQG 160 (590)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~~~~dvv~~~~~~~ 160 (590)
+..+++.
T Consensus 145 ---------~~~~~V~---------------------------------------------------------------- 151 (479)
T PRK07807 145 ---------DRFTQVR---------------------------------------------------------------- 151 (479)
T ss_pred ---------ccCCCHH----------------------------------------------------------------
Confidence 0000111
Q ss_pred chHHHHHHHHHhhhcCCCcccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchh
Q psy1056 161 NSIYQIEMIKYIKKEYPDMQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDV 237 (590)
Q Consensus 161 ~~~~~~~~v~~vk~~~~~~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl 237 (590)
++|+.++.+ ++++.++++.| .++++..+||+|+ +++++|+||.+|+
T Consensus 152 -------------------diMt~~~itV~~d~sL~eAl~lM---------~~~~i~~LPVVD~---~g~lvGIIT~~DI 200 (479)
T PRK07807 152 -------------------DVMSTDLVTLPAGTDPREAFDLL---------EAARVKLAPVVDA---DGRLVGVLTRTGA 200 (479)
T ss_pred -------------------HhccCCceEECCCCcHHHHHHHH---------HhcCCCEEEEEcC---CCeEEEEEEHHHH
Confidence 023222222 77889999999 9999999999997 6899999999999
Q ss_pred hccccccccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcC-CCceEEEEeecccccccCCCCCCcccC
Q psy1056 238 DFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILND-KGELIALIARTDLKKSRDYPDSSKDEN 316 (590)
Q Consensus 238 ~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~-~g~l~Giit~~dll~~~~~~~~~~d~~ 316 (590)
............=...+.. ....+ .....+..+.|.+.+++. .++|- +|. =....+.++... ...
T Consensus 201 l~~~~~~~~~~~~g~l~V~--aav~~--~~~~~~~a~~Lv~aGvd~-i~~D~a~~~---~~~~~~~i~~ik------~~~ 266 (479)
T PRK07807 201 LRATIYTPAVDAAGRLRVA--AAVGI--NGDVAAKARALLEAGVDV-LVVDTAHGH---QEKMLEALRAVR------ALD 266 (479)
T ss_pred HHHhhCCchhhhhhccchH--hhhcc--ChhHHHHHHHHHHhCCCE-EEEeccCCc---cHHHHHHHHHHH------HHC
Confidence 8332211000000011111 22222 234667888888899887 56663 444 112222333222 122
Q ss_pred Cc-eEEeEeeccchhHHHHHHHHHHcCCcEEEEecC-------C---CchhhHHHHHHHHHH---hCCCceEEe-ccccC
Q psy1056 317 NQ-LIVGAAIGTREADKNRLKLLSQAGVDVVILDSS-------Q---GNSIYQIEMIKFIKK---EYPDMQVIG-GNVLF 381 (590)
Q Consensus 317 ~~-l~v~a~i~~~~~~~e~~~~li~~gad~i~V~~~-------~---G~~~~~l~~i~~i~~---~~~~vpvi~-g~v~s 381 (590)
+. .+++.++. ..+.+..++++|+|++-|-.. . |.....+..+..+.+ .+ ++|+|+ |++.+
T Consensus 267 p~~~v~agnv~----t~~~a~~l~~aGad~v~vgig~gsictt~~~~~~~~p~~~av~~~~~~~~~~-~~~via~ggi~~ 341 (479)
T PRK07807 267 PGVPIVAGNVV----TAEGTRDLVEAGADIVKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAAAREL-GAHVWADGGVRH 341 (479)
T ss_pred CCCeEEeeccC----CHHHHHHHHHcCCCEEEECccCCcccccccccCCchhHHHHHHHHHHHHHhc-CCcEEecCCCCC
Confidence 22 23343654 357788899999999864321 1 222234555555554 44 799996 67779
Q ss_pred cHHHHHHHHCCCCEEEE
Q psy1056 382 GYQPRATLLNFIYQIEM 398 (590)
Q Consensus 382 ~~~a~~l~~~Gvd~i~v 398 (590)
..++.++..+||+++-+
T Consensus 342 ~~~~~~al~~ga~~v~~ 358 (479)
T PRK07807 342 PRDVALALAAGASNVMI 358 (479)
T ss_pred HHHHHHHHHcCCCeeec
Confidence 99999999999999954
|
|
| >TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2 | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.1e-18 Score=175.58 Aligned_cols=166 Identities=21% Similarity=0.191 Sum_probs=124.1
Q ss_pred HHHHHHcCCcEEEEecCC------Cch--hhHHHHHHHHHHhCCCceEEeccc---cCcHHHHHHHHCCCCEEEEccccc
Q psy1056 335 LKLLSQAGVDVVILDSSQ------GNS--IYQIEMIKFIKKEYPDMQVIGGNV---LFGYQPRATLLNFIYQIEMIKFIK 403 (590)
Q Consensus 335 ~~~li~~gad~i~V~~~~------G~~--~~~l~~i~~i~~~~~~vpvi~g~v---~s~~~a~~l~~~Gvd~i~v~~~~~ 403 (590)
+..++++++..++++..| |++ .++++.++.+++.+ ++||++|.+ .+.+.|+.|.++|+|+|+|+...+
T Consensus 136 ~i~~i~adal~i~ln~~q~~~~p~g~~~f~~~le~i~~i~~~~-~vPVivK~~g~g~~~~~a~~L~~aGvd~I~Vsg~gG 214 (333)
T TIGR02151 136 AIDMIEADALAIHLNVLQELVQPEGDRNFKGWLEKIAEICSQL-SVPVIVKEVGFGISKEVAKLLADAGVSAIDVAGAGG 214 (333)
T ss_pred HHHHhcCCCEEEcCcccccccCCCCCcCHHHHHHHHHHHHHhc-CCCEEEEecCCCCCHHHHHHHHHcCCCEEEECCCCC
Confidence 334445555555554322 443 34679999999998 799999887 589999999999999999943321
Q ss_pred ---------ccCC-----Ccccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCCCCC
Q psy1056 404 ---------KEYP-----DMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEA 468 (590)
Q Consensus 404 ---------~~~~-----~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~~es 468 (590)
|..+ .+.+||+ +..++.++++. ..++|||++|||+++.|++|||++|||+|++|++|...
T Consensus 215 t~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l~~~~~~--~~~ipVIasGGI~~~~di~kaLalGAd~V~igr~~L~~--- 289 (333)
T TIGR02151 215 TSWAQVENYRAKGSNLASFFNDWGIPTAASLLEVRSD--APDAPIIASGGLRTGLDVAKAIALGADAVGMARPFLKA--- 289 (333)
T ss_pred CcccchhhhcccccccchhhhcccHhHHHHHHHHHhc--CCCCeEEEECCCCCHHHHHHHHHhCCCeehhhHHHHHH---
Confidence 1101 1467888 88888777651 24699999999999999999999999999999988311
Q ss_pred CCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecccceeEEeeCCchhchHHHHHhhhhhhCcccC
Q psy1056 469 PGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCGLKHGCQDIG 548 (590)
Q Consensus 469 ~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~~~~~~~~~~~l~~~m~~~G 548 (590)
++ .+|. ..+.++++.|..+||..|+++|
T Consensus 290 ----------------------~~-----------------------~~g~-------~~v~~~i~~~~~eL~~~m~~~G 317 (333)
T TIGR02151 290 ----------------------AL-----------------------DEGE-------EAVIEEIELIIEELKVAMFLTG 317 (333)
T ss_pred ----------------------HH-----------------------hcCH-------HHHHHHHHHHHHHHHHHHHHhC
Confidence 00 0111 1267789999999999999999
Q ss_pred cCcHHHHHHh
Q psy1056 549 AKSLSNLRAM 558 (590)
Q Consensus 549 ~~~i~~l~~~ 558 (590)
++|++||++.
T Consensus 318 ~~~i~el~~~ 327 (333)
T TIGR02151 318 AKTIAELKKV 327 (333)
T ss_pred CCCHHHHccC
Confidence 9999999975
|
Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids. |
| >PRK07107 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.4e-16 Score=169.31 Aligned_cols=273 Identities=22% Similarity=0.264 Sum_probs=174.0
Q ss_pred CcCCCCCHHHHHHHHHhhhcccCccccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccccccccCC
Q psy1056 1 IIHHNCTPEYQANEVLKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENS 80 (590)
Q Consensus 1 ~~~~~~~~~~~~~~~~~vk~~~~~m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Did~l~~~ 80 (590)
|||+|||+++|...+++||++.+.+..++.+++|++|+.+|+++|.+++++.+||+|++...++++|+||.+|+++..
T Consensus 79 ~Ih~n~sie~qa~lV~kVk~~~~g~i~~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~-- 156 (502)
T PRK07107 79 FIFGSQSIESEAAMVRRVKNYKAGFVVSDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISR-- 156 (502)
T ss_pred EeeCCCCHHHHHHHHHHHHHHhcCCcCCCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccc--
Confidence 589999999999999999999877778888999999999999999999999999999721127999999999553210
Q ss_pred CCCCCCccCCcccccccccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHHcCCcEEEEcCCCC
Q psy1056 81 ANMDLKIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQG 160 (590)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~~~~dvv~~~~~~~ 160 (590)
.+...++.
T Consensus 157 --------~~~~~~V~---------------------------------------------------------------- 164 (502)
T PRK07107 157 --------MSLDTKVK---------------------------------------------------------------- 164 (502)
T ss_pred --------cCCCCCHH----------------------------------------------------------------
Confidence 00001111
Q ss_pred chHHHHHHHHHhhhcCCCcccccc--cccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecc
Q psy1056 161 NSIYQIEMIKYIKKEYPDMQVIGG--NVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSR 235 (590)
Q Consensus 161 ~~~~~~~~v~~vk~~~~~~~im~~--~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~ 235 (590)
++|+. ++.+ ++++.+|++.| .++++..+||+|+ +++++|+||.+
T Consensus 165 -------------------dIMt~~~~~itv~~d~~l~eAl~lM---------~e~~i~~LPVVD~---~g~LvGIIT~~ 213 (502)
T PRK07107 165 -------------------DFMTPFEKLVTANEGTTLKEANDII---------WDHKLNTLPIVDK---NGNLVYLVFRK 213 (502)
T ss_pred -------------------HHhCCCCCeEEECCCCcHHHHHHHH---------HHcCCCEEEEEcC---CCeEEEEEEhH
Confidence 13332 2222 77889999999 9999999999998 68999999999
Q ss_pred hhhccccccccccchhhccccCCCe---eEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCCCCCC
Q psy1056 236 DVDFLENSANMDLKIEKVMTNVNEI---ISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSS 312 (590)
Q Consensus 236 Dl~~~~~~~~~~~~V~~im~~~~~~---~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~~~~~ 312 (590)
|+....... ...++-.- .+ ..+..++ ..+-.+.+.+.+++.+.|-..+|.-... .+.++...
T Consensus 214 Dilk~~~~P---~a~~d~~g---rL~V~~av~~~~-~~~ra~~Lv~aGvd~i~vd~a~g~~~~~---~~~i~~ir----- 278 (502)
T PRK07107 214 DYDSHKENP---LELLDSSK---RYVVGAGINTRD-YAERVPALVEAGADVLCIDSSEGYSEWQ---KRTLDWIR----- 278 (502)
T ss_pred HHHhcccCh---hhhhhhcc---CeeeeeccChhh-HHHHHHHHHHhCCCeEeecCcccccHHH---HHHHHHHH-----
Confidence 998433221 11222111 22 1222332 3455566777888876543333321111 11222211
Q ss_pred cccCC-ce-EEeEeeccchhHHHHHHHHHHcCCcEEEEecCCC----------chhhHHHHHHHHHHh-------CC-Cc
Q psy1056 313 KDENN-QL-IVGAAIGTREADKNRLKLLSQAGVDVVILDSSQG----------NSIYQIEMIKFIKKE-------YP-DM 372 (590)
Q Consensus 313 ~d~~~-~l-~v~a~i~~~~~~~e~~~~li~~gad~i~V~~~~G----------~~~~~l~~i~~i~~~-------~~-~v 372 (590)
+..+ .+ +.+.++. ..+.++.++++|+|++.|-...| .....+..+..+.+. +. .+
T Consensus 279 -~~~~~~~~V~aGnV~----t~e~a~~li~aGAd~I~vg~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~ 353 (502)
T PRK07107 279 -EKYGDSVKVGAGNVV----DREGFRYLAEAGADFVKVGIGGGSICITREQKGIGRGQATALIEVAKARDEYFEETGVYI 353 (502)
T ss_pred -HhCCCCceEEecccc----CHHHHHHHHHcCCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHHHHHHhhcCCcc
Confidence 1111 12 2233443 24667788899999987733222 111123344433331 21 38
Q ss_pred eEEe-ccccCcHHHHHHHHCCCCEEEE
Q psy1056 373 QVIG-GNVLFGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 373 pvi~-g~v~s~~~a~~l~~~Gvd~i~v 398 (590)
|+|+ |++.+.-++-+++.+|||++-+
T Consensus 354 ~viadgGir~~gdi~KAla~GA~~vm~ 380 (502)
T PRK07107 354 PICSDGGIVYDYHMTLALAMGADFIML 380 (502)
T ss_pred eEEEcCCCCchhHHHHHHHcCCCeeee
Confidence 9886 5555777888888999999944
|
|
| >PLN02274 inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.5e-16 Score=167.40 Aligned_cols=274 Identities=25% Similarity=0.300 Sum_probs=180.8
Q ss_pred CcCCCCCHHHHHHHHHhhhcccCccccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccccccccCC
Q psy1056 1 IIHHNCTPEYQANEVLKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENS 80 (590)
Q Consensus 1 ~~~~~~~~~~~~~~~~~vk~~~~~m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Did~l~~~ 80 (590)
|||+|++++.+..+++++|+.+..|+++|++++|++|+.+|+++|.+++++.+||+|++...++++|++|.+|+....
T Consensus 82 fI~~~as~E~q~~~Irkvk~~~~gmi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~-- 159 (505)
T PLN02274 82 IVHYNNTAEEQAAIVRKAKSRRVGFVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN-- 159 (505)
T ss_pred EEcCCCCHHHHHHHHHHhhcccccccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc--
Confidence 589999999999999999999999999999999999999999999999999999999721226999999999543320
Q ss_pred CCCCCCccCCcccccccccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHHcCCcEEEEcCCCC
Q psy1056 81 ANMDLKIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQG 160 (590)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~~~~dvv~~~~~~~ 160 (590)
+..+++.
T Consensus 160 ---------~~~~~V~---------------------------------------------------------------- 166 (505)
T PLN02274 160 ---------DRETKLS---------------------------------------------------------------- 166 (505)
T ss_pred ---------ccCCcHH----------------------------------------------------------------
Confidence 0001111
Q ss_pred chHHHHHHHHHhhhcCCCccccccc--ccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecc
Q psy1056 161 NSIYQIEMIKYIKKEYPDMQVIGGN--VVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSR 235 (590)
Q Consensus 161 ~~~~~~~~v~~vk~~~~~~~im~~~--~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~ 235 (590)
++|+.+ +.+ ++++.++++.| .++++..+||+|+ +++++|+||.+
T Consensus 167 -------------------eIMt~~~~lvtv~~~~sL~eAl~~m---------~~~~~~~LPVVD~---~g~LvGvITr~ 215 (505)
T PLN02274 167 -------------------EVMTSDDDLVTAPAGIDLEEAEAVL---------KDSKKGKLPLVNE---DGELVDLVTRT 215 (505)
T ss_pred -------------------HHhccCCCcEEECCCCCHHHHHHHH---------HHcCCCEEEEEcC---CCeEEEEEEHH
Confidence 022211 111 77889999999 9999999999998 68999999999
Q ss_pred hhhccccccccccchhhccccCCCee---EEcCCCCHHHHHHHHHhcCCCcceEEcC-CCceEEEEeecccccccCCCCC
Q psy1056 236 DVDFLENSANMDLKIEKVMTNVNEII---SAQAGISLEEANVILEKSKKGKLPILND-KGELIALIARTDLKKSRDYPDS 311 (590)
Q Consensus 236 Dl~~~~~~~~~~~~V~~im~~~~~~~---tv~~~~~l~ea~~~m~~~~~~~lpVvd~-~g~l~Giit~~dll~~~~~~~~ 311 (590)
|+...........+..|-.- .+. .+.....-.+-.+.+.+.+.+.+ ++|- +|+-...+ +.++.+.
T Consensus 216 DIlk~~~~p~~~~~~~d~~~---~l~vgaavg~~~~~~~r~~~l~~ag~d~i-~iD~~~g~~~~~~---~~i~~ik---- 284 (505)
T PLN02274 216 DVKRVKGYPKLGKPSVGKDG---KLLVGAAIGTRESDKERLEHLVKAGVDVV-VLDSSQGDSIYQL---EMIKYIK---- 284 (505)
T ss_pred HHHHHhhCcCccccccCCCC---CEEEEEEEcCCccHHHHHHHHHHcCCCEE-EEeCCCCCcHHHH---HHHHHHH----
Confidence 99833222111111112111 222 13333333455566677787754 4553 23211111 2222222
Q ss_pred CcccCC-ceEEeEeeccchhHHHHHHHHHHcCCcEEEEecCC------------Cchh-hHHHHHHHHHHhCCCceEEe-
Q psy1056 312 SKDENN-QLIVGAAIGTREADKNRLKLLSQAGVDVVILDSSQ------------GNSI-YQIEMIKFIKKEYPDMQVIG- 376 (590)
Q Consensus 312 ~~d~~~-~l~v~a~i~~~~~~~e~~~~li~~gad~i~V~~~~------------G~~~-~~l~~i~~i~~~~~~vpvi~- 376 (590)
...+ ..++..++. ..+.+..+.++|+|++.+-... |.+. ..+..+..+.+.+ ++|||+
T Consensus 285 --~~~p~~~vi~g~v~----t~e~a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~-~vpVIad 357 (505)
T PLN02274 285 --KTYPELDVIGGNVV----TMYQAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQH-GVPVIAD 357 (505)
T ss_pred --HhCCCCcEEEecCC----CHHHHHHHHHcCcCEEEECCCCCccccCccccccCCCcccHHHHHHHHHHhc-CCeEEEe
Confidence 1112 223344554 3466778889999999774211 1111 1344566666666 689985
Q ss_pred ccccCcHHHHHHHHCCCCEEEE
Q psy1056 377 GNVLFGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 377 g~v~s~~~a~~l~~~Gvd~i~v 398 (590)
|.+.+..++.++..+||+++-+
T Consensus 358 GGI~~~~di~kAla~GA~~V~v 379 (505)
T PLN02274 358 GGISNSGHIVKALTLGASTVMM 379 (505)
T ss_pred CCCCCHHHHHHHHHcCCCEEEE
Confidence 7777999999999999999955
|
|
| >TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.6e-15 Score=162.59 Aligned_cols=272 Identities=25% Similarity=0.378 Sum_probs=175.0
Q ss_pred CcCCCCCHHHHHHHHHhhhcccCccccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccccccccCC
Q psy1056 1 IIHHNCTPEYQANEVLKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENS 80 (590)
Q Consensus 1 ~~~~~~~~~~~~~~~~~vk~~~~~m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Did~l~~~ 80 (590)
+||+|||+++|.+.+++||++++.|.++++++++++|+.+|+++|.+++++++||+|++...++++|++|.+|+.+..
T Consensus 62 vI~~n~~~e~q~~~V~~Vk~~~~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~-- 139 (450)
T TIGR01302 62 VIHRNMSIEEQAEQVKRVKRAENGIISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVK-- 139 (450)
T ss_pred eeecCCCHHHHHHHHhhhccccCceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhh--
Confidence 689999999999999999999999999999999999999999999999999999998741114999999999442210
Q ss_pred CCCCCCccCCcccccccccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHHcCCcEEEEcCCCC
Q psy1056 81 ANMDLKIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQG 160 (590)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~~~~dvv~~~~~~~ 160 (590)
+...++.
T Consensus 140 ---------~~~~~V~---------------------------------------------------------------- 146 (450)
T TIGR01302 140 ---------DKGKPVS---------------------------------------------------------------- 146 (450)
T ss_pred ---------cCCCCHH----------------------------------------------------------------
Confidence 0000111
Q ss_pred chHHHHHHHHHhhhcCCCccccc-ccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecch
Q psy1056 161 NSIYQIEMIKYIKKEYPDMQVIG-GNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRD 236 (590)
Q Consensus 161 ~~~~~~~~v~~vk~~~~~~~im~-~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~D 236 (590)
++|+ .++.+ ++++.++++.| .+++...+||+|+ +++++|+||.+|
T Consensus 147 -------------------dvm~~~~~~~V~~~~sl~eal~~m---------~~~~~~~lpVVDe---~G~lvGiVT~~D 195 (450)
T TIGR01302 147 -------------------EVMTREEVITVPEGIDLEEALKVL---------HEHRIEKLPVVDK---NGELVGLITMKD 195 (450)
T ss_pred -------------------HhhCCCCCEEECCCCcHHHHHHHH---------HHcCCCeEEEEcC---CCcEEEEEEhHH
Confidence 0222 11111 67788999999 9999999999998 799999999999
Q ss_pred hhccccccccccch--hhccccCCCeeEEcC-CCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCCCCCCc
Q psy1056 237 VDFLENSANMDLKI--EKVMTNVNEIISAQA-GISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSK 313 (590)
Q Consensus 237 l~~~~~~~~~~~~V--~~im~~~~~~~tv~~-~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~~~~~~ 313 (590)
+....... ...+- ..++.. -.+.. ...++.+. .+.+.+++.+-|--.+|+-.+ ..+.++....
T Consensus 196 Il~~~~~~-~~~~d~~g~l~V~----aav~~~~~~~~r~~-~L~~aG~d~I~vd~a~g~~~~---~~~~i~~i~~----- 261 (450)
T TIGR01302 196 IVKRRKFP-HASKDENGRLIVG----AAVGTREFDKERAE-ALVKAGVDVIVIDSSHGHSIY---VIDSIKEIKK----- 261 (450)
T ss_pred hhhcccCC-cceEeCCCCEEEE----EEecCchhHHHHHH-HHHHhCCCEEEEECCCCcHhH---HHHHHHHHHH-----
Confidence 98332111 00000 001110 01122 23345555 566778876554333332211 2222222221
Q ss_pred ccCCceEE-eEeeccchhHHHHHHHHHHcCCcEEEEecCCC----------chhhHHHHHHHH---HHhCCCceEEe-cc
Q psy1056 314 DENNQLIV-GAAIGTREADKNRLKLLSQAGVDVVILDSSQG----------NSIYQIEMIKFI---KKEYPDMQVIG-GN 378 (590)
Q Consensus 314 d~~~~l~v-~a~i~~~~~~~e~~~~li~~gad~i~V~~~~G----------~~~~~l~~i~~i---~~~~~~vpvi~-g~ 378 (590)
..+.+.+ ..++. ..+.+..++++|+|++-+-...| .....+..+..+ .+.+ ++|+|+ |+
T Consensus 262 -~~~~~~vi~G~v~----t~~~a~~l~~aGad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~-~vpviadGG 335 (450)
T TIGR01302 262 -TYPDLDIIAGNVA----TAEQAKALIDAGADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQS-GIPVIADGG 335 (450)
T ss_pred -hCCCCCEEEEeCC----CHHHHHHHHHhCCCEEEECCCCCcCCccceecCCCccHHHHHHHHHHHHhhc-CCeEEEeCC
Confidence 1122222 22332 35778889999999997643222 111123343333 3334 789996 67
Q ss_pred ccCcHHHHHHHHCCCCEEEE
Q psy1056 379 VLFGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 379 v~s~~~a~~l~~~Gvd~i~v 398 (590)
+.+..++.+++++||+++-+
T Consensus 336 i~~~~di~kAla~GA~~V~~ 355 (450)
T TIGR01302 336 IRYSGDIVKALAAGADAVML 355 (450)
T ss_pred CCCHHHHHHHHHcCCCEEEE
Confidence 88999999999999999944
|
This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models. |
| >TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-15 Score=165.29 Aligned_cols=188 Identities=21% Similarity=0.307 Sum_probs=141.4
Q ss_pred CcCCCCCHHHHHHHHHhhhcccCccccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccccccccCC
Q psy1056 1 IIHHNCTPEYQANEVLKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENS 80 (590)
Q Consensus 1 ~~~~~~~~~~~~~~~~~vk~~~~~m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Did~l~~~ 80 (590)
|||+|||++.|.+++++||.. ++|.++|+++++++|+.+|+++|.+++++.+||+|++ +++|++|.+|+... +
T Consensus 71 vIh~n~~i~~qae~v~~VKv~-eim~~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~g----klvGIVT~rDL~~~--~ 143 (475)
T TIGR01303 71 ILPQDLPIPAVKQTVAFVKSR-DLVLDTPITLAPHDTVSDAMALIHKRAHGAAVVILED----RPVGLVTDSDLLGV--D 143 (475)
T ss_pred EEeCCCCHHHHHHHHhhcchh-hccccCCeEECCCCCHHHHHHHHHhcCCeEEEEEECC----EEEEEEEHHHhhcC--C
Confidence 699999999999999999998 6799999999999999999999999999999999875 99999999965321 1
Q ss_pred CCCCCCccCCcccccccccccCCceeeCCCCCCchHHH-HHHHHHcCCeeEec---------------------------
Q psy1056 81 ANMDLKIEKDLSSPLTKKITLAAPLVSSPMDTVTESDM-AIAMALCGGIGAAI--------------------------- 132 (590)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~piv~~~~~tv~~~~~-~~~~~~~G~~gi~~--------------------------- 132 (590)
..+++.+ ++...++. .+.++...+.+ .+.......+.++.
T Consensus 144 ----------~~~~V~d-IMt~~lit-v~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~~~~~d~~ 211 (475)
T TIGR01303 144 ----------RFTQVRD-IMSTDLVT-APADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATIYTPATDAA 211 (475)
T ss_pred ----------CCCCHHH-HccCCceE-eCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhCCchhhhc
Confidence 1122222 22222222 22222112111 11111111111111
Q ss_pred ---------CCCcchHHHHHHHHHcCCcEEEEcCCCCchHHHHHHHHHhhhcCCCcccccccccchHHHHHHHHHhcccc
Q psy1056 133 ---------GTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGL 203 (590)
Q Consensus 133 ---------~~~~d~~~~~~~l~~~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~im~~~~~~~~~~~~a~~~m~~~~ 203 (590)
....+..+++..|+++|+|+|++|.+|++...+.+.+++++..+|..++|.+++.+.+...++.+..+|++
T Consensus 212 grl~Vgaav~~~~~~~~ra~~Lv~aGVd~i~~D~a~g~~~~~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~~G~d~i 291 (475)
T TIGR01303 212 GRLRIGAAVGINGDVGGKAKALLDAGVDVLVIDTAHGHQVKMISAIKAVRALDLGVPIVAGNVVSAEGVRDLLEAGANII 291 (475)
T ss_pred cCceehheeeeCccHHHHHHHHHHhCCCEEEEeCCCCCcHHHHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHHhCCCEE
Confidence 11224679999999999999999999999999999999999988888899999999999999999999999
Q ss_pred cccc
Q psy1056 204 RVGS 207 (590)
Q Consensus 204 ~v~~ 207 (590)
+||+
T Consensus 292 ~vg~ 295 (475)
T TIGR01303 292 KVGV 295 (475)
T ss_pred EECC
Confidence 9985
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302. |
| >COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.8e-15 Score=144.82 Aligned_cols=113 Identities=22% Similarity=0.407 Sum_probs=102.8
Q ss_pred ccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhccccccccccchhhcccc
Q psy1056 180 QVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTN 256 (590)
Q Consensus 180 ~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~ 256 (590)
++|+.++.+ ++|++++...+ .++++++.||+|+ ++++|++|..|+...-.....+.+|+++|++
T Consensus 176 ~~~s~~~i~v~~d~tl~eaak~f---------~~~~i~GaPVvd~----dk~vGiit~~dI~~aia~g~~~~kV~~~M~k 242 (294)
T COG2524 176 NLMSKKLITVRPDDTLREAAKLF---------YEKGIRGAPVVDD----DKIVGIITLSDIAKAIANGNLDAKVSDYMRK 242 (294)
T ss_pred hhccCCceEecCCccHHHHHHHH---------HHcCccCCceecC----CceEEEEEHHHHHHHHHcCCccccHHHHhcc
Confidence 478888777 99999999999 9999999999997 6999999999998443333568999999999
Q ss_pred CCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccC
Q psy1056 257 VNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRD 307 (590)
Q Consensus 257 ~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~ 307 (590)
++++++.|+.+.||+++|..+++++|.|+|.+|+++|+||++|+++.+.
T Consensus 243 --~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~ia 291 (294)
T COG2524 243 --NVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRIA 291 (294)
T ss_pred --CCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHhh
Confidence 9999999999999999999999999999999999999999999998753
|
|
| >cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.55 E-value=2e-14 Score=152.75 Aligned_cols=166 Identities=20% Similarity=0.130 Sum_probs=120.9
Q ss_pred hhHHHHHHHHHHhCCCceEEeccccC--cHHHHHHHHCC-CCEEEEccccccc--CC--Ccccccc-chhHHHHHHHHHh
Q psy1056 356 IYQIEMIKFIKKEYPDMQVIGGNVLF--GYQPRATLLNF-IYQIEMIKFIKKE--YP--DMQVIGR-NGTAVYRVAEYAS 427 (590)
Q Consensus 356 ~~~l~~i~~i~~~~~~vpvi~g~v~s--~~~a~~l~~~G-vd~i~v~~~~~~~--~~--~~~~~g~-~~~~l~~~~~~~~ 427 (590)
..+.+.++++++.++++||++|.+.. .+++.++.+.| +|+|.|+...+.. .. -..+||. +..++.++.+++.
T Consensus 199 ~~l~~~I~~lr~~~~~~pV~vK~~~~~~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~v~~~~~ 278 (392)
T cd02808 199 EDLAQLIEDLREATGGKPIGVKLVAGHGEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARAHQALV 278 (392)
T ss_pred HHHHHHHHHHHHhCCCceEEEEECCCCCHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHHHHHHHH
Confidence 45688999999998559999999884 66666666655 9999885442211 00 0246888 8888888887765
Q ss_pred cC----CCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCCCC-----------CCCceEeecCeeeeeeeccccHHHH
Q psy1056 428 RR----GVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSE-----------APGEYFFSDGVRLKKYRGMGSLEAM 492 (590)
Q Consensus 428 ~~----~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~~e-----------s~~~~~~~~g~~~k~~~g~~s~~a~ 492 (590)
.. ++|||++|||+|+.|++|||+||||+|.+|++|..+.+ ||--+-.++...+
T Consensus 279 ~~~~~~~i~viasGGI~~g~Dv~kalaLGAd~V~ig~~~l~al~c~~~~~c~~~~cP~Giat~~~~~~------------ 346 (392)
T cd02808 279 KNGLRDRVSLIASGGLRTGADVAKALALGADAVGIGTAALIALGCIQARKCHTNTCPVGVATQDPELR------------ 346 (392)
T ss_pred HcCCCCCCeEEEECCCCCHHHHHHHHHcCCCeeeechHHHHhcchHHHHhcCCCCCCcccccCChHhh------------
Confidence 33 59999999999999999999999999999999875543 3322222211111
Q ss_pred hcccCCCcccchhhhccccceeecccceeEEeeCCchhchHHHHHhhhhhhCcccCcCcHHHHHHh
Q psy1056 493 SRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRAM 558 (590)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~~~~~~~~~~~l~~~m~~~G~~~i~~l~~~ 558 (590)
....+++|.++ |.++++.|..+|+..|.++|+.++++|++.
T Consensus 347 ------------------~~~~~~~~~~~-------v~~~~~~~~~el~~~m~~~G~~~~~~l~~~ 387 (392)
T cd02808 347 ------------------RRLDVEGKAER-------VANYLKSLAEELRELAAALGKRSLELLGRS 387 (392)
T ss_pred ------------------hhcCCchHHHH-------HHHHHHHHHHHHHHHHHHhCCCChHHCCHH
Confidence 01123333333 778899999999999999999999999765
|
GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor. |
| >PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.8e-13 Score=152.72 Aligned_cols=87 Identities=18% Similarity=0.258 Sum_probs=72.2
Q ss_pred CeEEEEEecchhhccccccccccchhhccc-cCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 226 EKLLGIVTSRDVDFLENSANMDLKIEKVMT-NVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 226 ~~lvGivt~~Dl~~~~~~~~~~~~V~~im~-~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
..+.+|+|..|............+|+++|+ + +++++++++++.++.+.|.+++++.+||+|++|+++|+||.+|+++
T Consensus 224 ~~i~ii~t~~dt~~t~~~l~~~~~V~~iM~~~--~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~dl~~ 301 (546)
T PRK14869 224 NGVTVISTPYDTFTTARLINQSIPVSYIMTTE--DLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLLS 301 (546)
T ss_pred CCCeEEEecccHHHHHHHhhcCCCHHHhccCC--CcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEHHHhhc
Confidence 357788899998733333335689999999 7 9999999999999999999999999999999999999999999998
Q ss_pred ccCCCCCCcc
Q psy1056 305 SRDYPDSSKD 314 (590)
Q Consensus 305 ~~~~~~~~~d 314 (590)
.......+.|
T Consensus 302 ~~~~~~iLVD 311 (546)
T PRK14869 302 PVRKKVILVD 311 (546)
T ss_pred cccCceEEEc
Confidence 7655443333
|
|
| >COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1e-13 Score=134.91 Aligned_cols=117 Identities=21% Similarity=0.303 Sum_probs=103.1
Q ss_pred CCCcccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhcc------cc-ccc
Q psy1056 176 YPDMQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFL------EN-SAN 245 (590)
Q Consensus 176 ~~~~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~------~~-~~~ 245 (590)
..-.+||++++++ ++++.+|.+.+ .+|+++.+||+|+ +.+++||||.+|+... +. ...
T Consensus 245 LtcadIMSrdVvtv~~~ts~dhA~~ll---------~~H~ikaLPV~d~---~~rl~GiVt~~dl~~~a~~~p~qrlr~~ 312 (382)
T COG3448 245 LTCADIMSRDVVTVSTDTSIDHARKLL---------QEHRIKALPVLDE---HRRLVGIVTQRDLLKHARPSPFQRLRFL 312 (382)
T ss_pred ccHHHhcCccceecCCcCChHHHHHHH---------HHcCccccccccc---ccceeeeeeHHHHhhccCcchHHHhhcc
Confidence 3345699999988 99999999999 9999999999999 7999999999999721 11 111
Q ss_pred cccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccccc
Q psy1056 246 MDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSR 306 (590)
Q Consensus 246 ~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~ 306 (590)
...+++.+|++ ++.|+.++++..+..-.+.+.+.+.+||+|++|+++||||++|++.+.
T Consensus 313 ~~~~vk~imt~--~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g~lvGIvsQtDliaal 371 (382)
T COG3448 313 RPPTVKGIMTT--PVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDLIAAL 371 (382)
T ss_pred CCCcccccccC--cceeecCCCcHHHHHHHhhcCCcceeeEEcCCCcEEEEeeHHHHHHHH
Confidence 34679999999 999999999999999999999999999999999999999999998764
|
|
| >cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.1e-13 Score=117.12 Aligned_cols=102 Identities=17% Similarity=0.209 Sum_probs=90.2
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhccccccccccchhhccccCCCeeEEcCCCC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGIS 268 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~ 268 (590)
+.++.++++.| .+++.+.+||+++ +++++|++|..|+.......+...++.++|.. ++.+++++++
T Consensus 9 ~~~l~~a~~~~---------~~~~~~~~~V~d~---~~~~~G~v~~~dl~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~ 74 (111)
T cd04603 9 ENPLREAIKMI---------NELGARAVVVVDE---ENKVLGQVTLSDLLEIGPNDYETLKVCEVYIV--PVPIVYCDSK 74 (111)
T ss_pred CCcHHHHHHHH---------HHcCCCEEEEEcC---CCCEEEEEEHHHHHhhccccccccChhheeec--CCcEECCCCc
Confidence 67889999999 8888999999997 68999999999998543322234679999988 8899999999
Q ss_pred HHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 269 LEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 269 l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
+.+|+++|.+++.+.+||+|++|+++|+||.+|+++
T Consensus 75 l~~al~~m~~~~~~~lpVvd~~~~~~Giit~~di~~ 110 (111)
T cd04603 75 VTDLLRIFRETEPPVVAVVDKEGKLVGTIYERELLR 110 (111)
T ss_pred HHHHHHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence 999999999999999999999899999999999875
|
CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1 | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.2e-11 Score=128.97 Aligned_cols=133 Identities=23% Similarity=0.216 Sum_probs=82.4
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCcc
Q psy1056 331 DKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQ 410 (590)
Q Consensus 331 ~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~ 410 (590)
..+.++.+++.+++++.... |.+ ..+.++.+++. ++.++. .|.|.+.|+++.++|+|+|.+ .+.+..|..
T Consensus 102 ~~~~~~~~~~~~~~~v~~~~--G~p--~~~~i~~l~~~--gi~v~~-~v~s~~~A~~a~~~G~D~iv~---qG~eAGGH~ 171 (330)
T PF03060_consen 102 FEEQLDVALEAKPDVVSFGF--GLP--PPEVIERLHAA--GIKVIP-QVTSVREARKAAKAGADAIVA---QGPEAGGHR 171 (330)
T ss_dssp HHHHHHHHHHS--SEEEEES--SSC---HHHHHHHHHT--T-EEEE-EESSHHHHHHHHHTT-SEEEE---E-TTSSEE-
T ss_pred cccccccccccceEEEEeec--ccc--hHHHHHHHHHc--CCcccc-ccCCHHHHHHhhhcCCCEEEE---eccccCCCC
Confidence 34667778888888887633 333 12355666665 666654 899999999999999999944 222211111
Q ss_pred ccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCCCCCCCceEe
Q psy1056 411 VIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFF 474 (590)
Q Consensus 411 ~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~~es~~~~~~ 474 (590)
+.... +....+....+..++|||+.|||.++.+++.||+|||++|+||++|..|.||+.+-.+
T Consensus 172 g~~~~-~~~~L~~~v~~~~~iPViaAGGI~dg~~iaaal~lGA~gV~~GTrFl~t~Es~~~~~~ 234 (330)
T PF03060_consen 172 GFEVG-STFSLLPQVRDAVDIPVIAAGGIADGRGIAAALALGADGVQMGTRFLATEESGASDAY 234 (330)
T ss_dssp --SSG--HHHHHHHHHHH-SS-EEEESS--SHHHHHHHHHCT-SEEEESHHHHTSTTS-S-HHH
T ss_pred Ccccc-ceeeHHHHHhhhcCCcEEEecCcCCHHHHHHHHHcCCCEeecCCeEEecccccChHHH
Confidence 21111 1222233333344699999999999999999999999999999999999999976433
|
13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A. |
| >TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.3e-11 Score=127.10 Aligned_cols=128 Identities=22% Similarity=0.149 Sum_probs=92.3
Q ss_pred HHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCcccc
Q psy1056 333 NRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVI 412 (590)
Q Consensus 333 e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~ 412 (590)
+.++.+++.+++++.+. .|.+ .+.++.+++. +++++. .|.+.+.++++.++|+|+|.+. ++..+|..+.
T Consensus 78 ~~~~~~~~~~v~~v~~~--~g~p---~~~i~~lk~~--g~~v~~-~v~s~~~a~~a~~~GaD~Ivv~---g~eagGh~g~ 146 (307)
T TIGR03151 78 ELVDLVIEEKVPVVTTG--AGNP---GKYIPRLKEN--GVKVIP-VVASVALAKRMEKAGADAVIAE---GMESGGHIGE 146 (307)
T ss_pred HHHHHHHhCCCCEEEEc--CCCc---HHHHHHHHHc--CCEEEE-EcCCHHHHHHHHHcCCCEEEEE---CcccCCCCCC
Confidence 45666778888888763 3444 2467777776 677664 8999999999999999999542 2221111111
Q ss_pred ccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCCCCCCCceEe
Q psy1056 413 GRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFF 474 (590)
Q Consensus 413 g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~~es~~~~~~ 474 (590)
..+...+.++. ...++|||++|||.++.++++||++||++|++|++|..+.||+.+-.+
T Consensus 147 ~~~~~ll~~v~---~~~~iPviaaGGI~~~~~~~~al~~GA~gV~iGt~f~~t~Es~~~~~~ 205 (307)
T TIGR03151 147 LTTMALVPQVV---DAVSIPVIAAGGIADGRGMAAAFALGAEAVQMGTRFLCAKECNVHPNY 205 (307)
T ss_pred CcHHHHHHHHH---HHhCCCEEEECCCCCHHHHHHHHHcCCCEeecchHHhcccccCCCHHH
Confidence 00333333443 344699999999999999999999999999999999999999876433
|
This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase. |
| >cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.7e-12 Score=113.77 Aligned_cols=102 Identities=19% Similarity=0.287 Sum_probs=90.4
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhc-ccc--ccccccchhhccccCCCeeEEcC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDF-LEN--SANMDLKIEKVMTNVNEIISAQA 265 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~-~~~--~~~~~~~V~~im~~~~~~~tv~~ 265 (590)
++++.++++.| .+.++..+||+++ +++++|++|.+|+.. ... ......++.++|.+ +++++++
T Consensus 9 ~~~l~~a~~~~---------~~~~~~~~~Vvd~---~g~~~G~vt~~dl~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~ 74 (114)
T cd04619 9 NATLQRAAKIL---------GEPGIDLVVVCDP---HGKLAGVLTKTDVVRQMGRCGGPGCTAPVENVMTR--AVVSCRP 74 (114)
T ss_pred CCcHHHHHHHH---------HhcCCCEEEEECC---CCCEEEEEehHHHHHHHhhcCCCcccCCHHHHhcC--CCeeECC
Confidence 78899999999 9999999999998 689999999999872 211 12345789999998 9999999
Q ss_pred CCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 266 GISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 266 ~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
++++.++++.|.+++.+.+||+|++|+++|+||++|+++
T Consensus 75 ~~~l~~a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 75 GDLLHDVWQVMKQRGLKNIPVVDENARPLGVLNARDALK 113 (114)
T ss_pred CCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence 999999999999999999999998899999999999875
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >PRK07565 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.3e-11 Score=127.27 Aligned_cols=165 Identities=17% Similarity=0.176 Sum_probs=116.7
Q ss_pred hHHHHHHHHHHcCCcEEEEecCC--Cc-------h-hhHHHHHHHHHHhCCCceEEeccccC----cHHHHHHHHCCCCE
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQ--GN-------S-IYQIEMIKFIKKEYPDMQVIGGNVLF----GYQPRATLLNFIYQ 395 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~--G~-------~-~~~l~~i~~i~~~~~~vpvi~g~v~s----~~~a~~l~~~Gvd~ 395 (590)
+..+.++.+.++|++.+.++.+. +. . ..+.+.++.+++.. ++|+++|.... .+.++.|.++|+|+
T Consensus 115 e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~-~iPV~vKl~p~~~~~~~~a~~l~~~G~dg 193 (334)
T PRK07565 115 GWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAV-SIPVAVKLSPYFSNLANMAKRLDAAGADG 193 (334)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhcc-CCcEEEEeCCCchhHHHHHHHHHHcCCCe
Confidence 44567777888899999997642 11 1 22567888888876 79999984442 46678889999999
Q ss_pred EEEcccccccC-C-----Ccccccc-chhH----HHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccC
Q psy1056 396 IEMIKFIKKEY-P-----DMQVIGR-NGTA----VYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAG 464 (590)
Q Consensus 396 i~v~~~~~~~~-~-----~~~~~g~-~~~~----l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~ 464 (590)
|.+........ + ...+||+ .+.. +..+.+..+..++|||+.|||+|+.|+.++|.+|||+|++|+.+.
T Consensus 194 I~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~~ipIig~GGI~s~~Da~e~l~aGA~~V~v~t~~~- 272 (334)
T PRK07565 194 LVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRVGADLAATTGVHDAEDVIKMLLAGADVVMIASALL- 272 (334)
T ss_pred EEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHcCCCceeeehHHh-
Confidence 97632211100 0 0235666 4332 233333434447999999999999999999999999999999872
Q ss_pred CCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecccceeEEeeCCchhchHHHHHhhhhhhC
Q psy1056 465 TSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCGLKHGC 544 (590)
Q Consensus 465 ~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~~~~~~~~~~~l~~~m 544 (590)
|+| .+++..+..+|+..|
T Consensus 273 ------------------~~g--------------------------------------------~~~~~~i~~~L~~~l 290 (334)
T PRK07565 273 ------------------RHG--------------------------------------------PDYIGTILRGLEDWM 290 (334)
T ss_pred ------------------hhC--------------------------------------------cHHHHHHHHHHHHHH
Confidence 011 134778889999999
Q ss_pred cccCcCcHHHHHHh
Q psy1056 545 QDIGAKSLSNLRAM 558 (590)
Q Consensus 545 ~~~G~~~i~~l~~~ 558 (590)
...|.++++||+..
T Consensus 291 ~~~g~~~i~e~~g~ 304 (334)
T PRK07565 291 ERHGYESLQQFRGS 304 (334)
T ss_pred HHcCCCCHHHHhcc
Confidence 99999999999865
|
|
| >PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: |
Back alignment and domain information |
|---|
Probab=99.34 E-value=9.6e-12 Score=115.68 Aligned_cols=127 Identities=22% Similarity=0.253 Sum_probs=86.7
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCch-hhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCC
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNS-IYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPD 408 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~-~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~ 408 (590)
...+.+++++++|++++.+|...-.+ ..+.+.++.+++++ .+ +..+|.|.|+++.+.++|+|+| ++|.. |
T Consensus 52 PT~~ev~~l~~aGadIIAlDaT~R~Rp~~l~~li~~i~~~~--~l-~MADist~ee~~~A~~~G~D~I----~TTLs--G 122 (192)
T PF04131_consen 52 PTLKEVDALAEAGADIIALDATDRPRPETLEELIREIKEKY--QL-VMADISTLEEAINAAELGFDII----GTTLS--G 122 (192)
T ss_dssp -SHHHHHHHHHCT-SEEEEE-SSSS-SS-HHHHHHHHHHCT--SE-EEEE-SSHHHHHHHHHTT-SEE----E-TTT--T
T ss_pred CCHHHHHHHHHcCCCEEEEecCCCCCCcCHHHHHHHHHHhC--cE-EeeecCCHHHHHHHHHcCCCEE----Ecccc--c
Confidence 34678899999999999999865433 45678899999987 44 4569999999999999999999 66643 2
Q ss_pred ccccccchhH-HHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCCC
Q psy1056 409 MQVIGRNGTA-VYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTS 466 (590)
Q Consensus 409 ~~~~g~~~~~-l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~~ 466 (590)
+++....... +..+.+.+. .++|+|++|+|++|.++.+||.+||++|++|+++.+++
T Consensus 123 YT~~t~~~~pD~~lv~~l~~-~~~pvIaEGri~tpe~a~~al~~GA~aVVVGsAITrP~ 180 (192)
T PF04131_consen 123 YTPYTKGDGPDFELVRELVQ-ADVPVIAEGRIHTPEQAAKALELGAHAVVVGSAITRPQ 180 (192)
T ss_dssp SSTTSTTSSHHHHHHHHHHH-TTSEEEEESS--SHHHHHHHHHTT-SEEEE-HHHH-HH
T ss_pred CCCCCCCCCCCHHHHHHHHh-CCCcEeecCCCCCHHHHHHHHhcCCeEEEECcccCCHH
Confidence 2221111112 333444443 47999999999999999999999999999999987553
|
; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B. |
| >COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription] | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.6e-12 Score=122.34 Aligned_cols=112 Identities=26% Similarity=0.416 Sum_probs=92.1
Q ss_pred hhhcccCccccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccccccccCCCCCCCCccCCcccccc
Q psy1056 17 KVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKDLSSPLT 96 (590)
Q Consensus 17 ~vk~~~~~m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Did~l~~~~~~~~~~~~~~~~~l~ 96 (590)
+|+.. |+++++++.|++|+.||.+++.+++|++.||+|++ +++|++|..| +..
T Consensus 173 ~V~~~---~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~d----k~vGiit~~d--I~~------------------ 225 (294)
T COG2524 173 KVKNL---MSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDDD----KIVGIITLSD--IAK------------------ 225 (294)
T ss_pred hhhhh---ccCCceEecCCccHHHHHHHHHHcCccCCceecCC----ceEEEEEHHH--HHH------------------
Confidence 55665 99999999999999999999999999999999997 9999999994 320
Q ss_pred cccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHHcCCcEEEEcCCCCchHHHHHHHHHhhhcC
Q psy1056 97 KKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEY 176 (590)
Q Consensus 97 ~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~~~~dvv~~~~~~~~~~~~~~~v~~vk~~~ 176 (590)
+ ++ .| +.. .+++
T Consensus 226 ----------------------a--ia-~g-------~~~---------------------------------~kV~--- 237 (294)
T COG2524 226 ----------------------A--IA-NG-------NLD---------------------------------AKVS--- 237 (294)
T ss_pred ----------------------H--HH-cC-------Ccc---------------------------------ccHH---
Confidence 0 01 00 000 1122
Q ss_pred CCcccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhh
Q psy1056 177 PDMQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVD 238 (590)
Q Consensus 177 ~~~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~ 238 (590)
++|.+++++ ++.+.+|++.| ..++++++.|+|. +|+++||+|..|++
T Consensus 238 ---~~M~k~vitI~eDe~i~dAir~M---------~~~nVGRLlV~ds---~gkpvGiITrTDIL 287 (294)
T COG2524 238 ---DYMRKNVITINEDEDIYDAIRLM---------NKNNVGRLLVTDS---NGKPVGIITRTDIL 287 (294)
T ss_pred ---HHhccCCceEcCchhHHHHHHHH---------HhcCcceEEEEcc---CCcEEEEEehHHHH
Confidence 378888877 88999999999 9999999999998 79999999999997
|
|
| >cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.31 E-value=8.5e-12 Score=109.93 Aligned_cols=104 Identities=19% Similarity=0.233 Sum_probs=88.3
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhccc--cccccccchhhccccCCCeeEEcCC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLE--NSANMDLKIEKVMTNVNEIISAQAG 266 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~--~~~~~~~~V~~im~~~~~~~tv~~~ 266 (590)
++++.++++.| ..++...+||+++ +++++|++|..|+.... .......+++++|++..++++++++
T Consensus 9 ~~~~~~a~~~~---------~~~~~~~~~V~d~---~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 76 (118)
T cd04617 9 NTSVYDAIVTL---------FLEDVGSLFVVDE---DGDLVGVVSRKDLLKASIGGADLQKVPVGVIMTRMPNITTTTPE 76 (118)
T ss_pred CCCHHHHHHHH---------HHcCCCEEEEEcC---CCCEEEEEEHHHHHHHHHcCCCccCCCHHHHhCCCCCcEEECCC
Confidence 67899999999 8889999999997 68999999999987322 1222356788999732268899999
Q ss_pred CCHHHHHHHHHhcCCCcceEEcCC---CceEEEEeeccccc
Q psy1056 267 ISLEEANVILEKSKKGKLPILNDK---GELIALIARTDLKK 304 (590)
Q Consensus 267 ~~l~ea~~~m~~~~~~~lpVvd~~---g~l~Giit~~dll~ 304 (590)
+++.+++++|.+++++.+||+|++ |+++|+||++|+++
T Consensus 77 ~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 77 ESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred CcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 999999999999999999999987 79999999999875
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50 | Back alignment and domain information |
|---|
Probab=99.31 E-value=9.5e-12 Score=108.69 Aligned_cols=104 Identities=22% Similarity=0.326 Sum_probs=87.5
Q ss_pred hHHHHHHHHHhccccccccccccC-ceeeEEeeCCCCCCeEEEEEecchhhccccccccccchhhccccCCCeeEEcCCC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHG-FCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGI 267 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~-~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~ 267 (590)
+.++.++.+.| .+++ .+.+||+++ +++++|+++.+|+...........++.++|.+..+++++.+++
T Consensus 9 ~~~l~~~~~~~---------~~~~~~~~~~V~d~---~~~~~G~v~~~dl~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~ 76 (114)
T cd04801 9 HLTLREFVREY---------VLGSNQRRFVVVDN---EGRYVGIISLADLRAIPTSQWAQTTVIQVMTPAAKLVTVLSEE 76 (114)
T ss_pred CCCHHHHHHHH---------hccCCceeEEEEcC---CCcEEEEEEHHHHHHHHHhhccccchhhhhcccccceEECCCC
Confidence 77889999888 6664 889999987 6999999999999843222223467999997522467999999
Q ss_pred CHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 268 SLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 268 ~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
++.+|++.|.+++.+.+||+|++|+++|++|.+|+++
T Consensus 77 ~l~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~ 113 (114)
T cd04801 77 SLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR 113 (114)
T ss_pred cHHHHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence 9999999999999999999998899999999999875
|
CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.6e-12 Score=106.24 Aligned_cols=88 Identities=20% Similarity=0.319 Sum_probs=78.2
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhccccccccccchhhccccCCCeeEEcCCCC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGIS 268 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~ 268 (590)
++++.++.+.| .+++++++||++++ +++++|++|.+|+.... .++++.++++
T Consensus 9 ~~~l~~a~~~~---------~~~~~~~~~Vvd~~--~~~~~Givt~~Dl~~~~-----------------~~~~v~~~~~ 60 (98)
T cd04618 9 KLPVKKAFNAL---------VENGIRSAPLWDSR--KQQFVGMLTITDFILIL-----------------RLVSIHPERS 60 (98)
T ss_pred CCcHHHHHHHH---------HHcCCceEEEEeCC--CCEEEEEEEHHHHhhhe-----------------eeEEeCCCCc
Confidence 78999999999 99999999999861 27999999999986210 1678999999
Q ss_pred HHHHHHHHHhcCCCcceEEcCC-CceEEEEeeccccc
Q psy1056 269 LEEANVILEKSKKGKLPILNDK-GELIALIARTDLKK 304 (590)
Q Consensus 269 l~ea~~~m~~~~~~~lpVvd~~-g~l~Giit~~dll~ 304 (590)
+.+|+++|.+++++++||+|++ |+++|+||.+|+++
T Consensus 61 l~~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~ 97 (98)
T cd04618 61 LFDAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK 97 (98)
T ss_pred HHHHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence 9999999999999999999987 99999999999875
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.8e-12 Score=110.45 Aligned_cols=102 Identities=13% Similarity=0.224 Sum_probs=84.4
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhccccccc---cccchhh------ccccCCC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSAN---MDLKIEK------VMTNVNE 259 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~~~~---~~~~V~~------im~~~~~ 259 (590)
++++.++++.| .+++++.+||+++ +++++|++|.+|+........ ...++.+ +|.. +
T Consensus 9 ~~~l~~a~~~~---------~~~~~~~~pVv~~---~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 74 (120)
T cd04641 9 DTPLIDVLDML---------VERRVSALPIVDE---NGKVVDVYSRFDVINLAKEGAYNNLDLTVGEALERRSQDFE--G 74 (120)
T ss_pred CCCHHHHHHHH---------HHcCCCeeeEECC---CCeEEEEEeHHHHHHHHhcCccccccCCHHHHHhhcccCCC--C
Confidence 78899999999 9999999999987 699999999999983221111 1122333 3444 6
Q ss_pred eeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 260 IISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 260 ~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
+.++++++++.++++.|.+++.+.+||+|++|+++|+||++|+++
T Consensus 75 ~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~ 119 (120)
T cd04641 75 VRTCSPDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQ 119 (120)
T ss_pred CeEEcCCCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhhc
Confidence 789999999999999999999999999998899999999999875
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.3e-11 Score=109.33 Aligned_cols=103 Identities=17% Similarity=0.346 Sum_probs=89.5
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhcc-cccc-----------ccccchhhcccc
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFL-ENSA-----------NMDLKIEKVMTN 256 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~-~~~~-----------~~~~~V~~im~~ 256 (590)
++++.++.+.| .+.+++++||+++ +++++|+++.+|+... .... ....++.++|.+
T Consensus 10 ~~~~~~~~~~~---------~~~~~~~~~V~~~---~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 77 (124)
T cd04600 10 DTSLEEAWALL---------RRHRIKALPVVDG---DRRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGDIMSP 77 (124)
T ss_pred CCCHHHHHHHH---------HHcCCceeeEECC---CCCEEEEEEHHHHHhhhcccccchhhhhhhcccccccHHHhccC
Confidence 77899999999 8888999999987 6999999999999622 2111 124579999998
Q ss_pred CCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccc
Q psy1056 257 VNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKS 305 (590)
Q Consensus 257 ~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~ 305 (590)
+++++++++++.++++.|.+++.+.+||+|++|+++|+||..|++++
T Consensus 78 --~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~~ 124 (124)
T cd04600 78 --PVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIAA 124 (124)
T ss_pred --CCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhcC
Confidence 99999999999999999999999999999999999999999999863
|
These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.7e-11 Score=106.88 Aligned_cols=102 Identities=24% Similarity=0.330 Sum_probs=88.8
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhcc-ccccccccchhhccccCCCeeEEcCCC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFL-ENSANMDLKIEKVMTNVNEIISAQAGI 267 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~-~~~~~~~~~V~~im~~~~~~~tv~~~~ 267 (590)
++++.++++.| .+.+++.+||+++ +++++|++|.+|+... ........++.++|.+ ++.++++++
T Consensus 10 ~~~~~~~~~~~---------~~~~~~~~~v~d~---~~~~~G~v~~~dl~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~ 75 (113)
T cd04607 10 DASILDALRKI---------DKNALRIVLVVDE---NGRLLGTVTDGDIRRALLKGLSLDDPVSEVMNR--NPITAKVGS 75 (113)
T ss_pred CCCHHHHHHHH---------HhcCcCEEEEECC---CCCEEEEEEcHHHHHHHhcCCCcCCCHHHhhcC--CCEEEcCCC
Confidence 67889999999 8888899999987 6899999999998732 1212234679999988 899999999
Q ss_pred CHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 268 SLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 268 ~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
++.++++.|.+++.+.+||+|++|+++|+||.+|++.
T Consensus 76 ~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 112 (113)
T cd04607 76 SREEILALMRERSIRHLPILDEEGRVVGLATLDDLLS 112 (113)
T ss_pred CHHHHHHHHHHCCCCEEEEECCCCCEEEEEEhHHhcc
Confidence 9999999999999999999998999999999999875
|
CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.9e-11 Score=106.89 Aligned_cols=102 Identities=21% Similarity=0.349 Sum_probs=88.5
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCC-CeEEEEEecchhhc-c-cc-ccccccchhhccccCCCeeEEc
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLG-EKLLGIVTSRDVDF-L-EN-SANMDLKIEKVMTNVNEIISAQ 264 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~-~~lvGivt~~Dl~~-~-~~-~~~~~~~V~~im~~~~~~~tv~ 264 (590)
++++.++++.| .+++++.+||+++ + ++++|++|.+|++. . .. ......++.++|.+ ++++++
T Consensus 9 ~~~~~~~~~~~---------~~~~~~~~~V~~~---~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~--~~~~v~ 74 (114)
T cd04630 9 LATVAEALQLM---------KEHGVSSLVVEKR---RESDAYGIVTMRDILKKVVAEGRDPDRVNVYEIMTK--PLISVS 74 (114)
T ss_pred CCcHHHHHHHH---------HHcCCCEEEEEEC---CCCcEEEEEehHHHHHHHHhCCCCCCccCHHHHhcC--CCeeEC
Confidence 67899999999 8889999999997 6 89999999999973 2 21 12234679999988 899999
Q ss_pred CCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccc
Q psy1056 265 AGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKS 305 (590)
Q Consensus 265 ~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~ 305 (590)
+++++.++++.|.+++...+||+|+ |+++|+||+.|++++
T Consensus 75 ~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~~ 114 (114)
T cd04630 75 PDMDIKYCARLMERTNIRRAPVVEN-NELIGIISLTDIFLA 114 (114)
T ss_pred CCCCHHHHHHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhcC
Confidence 9999999999999999999999997 999999999998763
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >COG4109 Predicted transcriptional regulator containing CBS domains [Transcription] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.5e-11 Score=122.68 Aligned_cols=102 Identities=30% Similarity=0.413 Sum_probs=95.3
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhccccccccccchhhccccCCCeeEEcCCCC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGIS 268 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~ 268 (590)
++++++..++. .+.+++++||+|+ ..+++|+||.+|+.-.. .+.++..+|++ +|+++.+.++
T Consensus 206 ~d~v~d~~~l~---------~kt~~sRfPVvn~---~~kvvGvVt~rDv~~~~----~~t~ieKVMtk--np~tv~~~ts 267 (432)
T COG4109 206 TDTVEDWLDLV---------EKTGHSRFPVVNR---SMKVVGVVTMRDVLDKK----PSTTIEKVMTK--NPITVRAKTS 267 (432)
T ss_pred cccHHHHHHHH---------HHcCCCccceecc---cceEEEEEEehhhhcCC----CCccHHHHhcc--CCeeecccch
Confidence 88999999998 9999999999999 79999999999997443 35889999999 9999999999
Q ss_pred HHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCC
Q psy1056 269 LEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDY 308 (590)
Q Consensus 269 l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~ 308 (590)
+..+.+.|...++..+||+|++.+++|+||++|+++++..
T Consensus 268 VAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq~ 307 (432)
T COG4109 268 VASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQM 307 (432)
T ss_pred HHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHHH
Confidence 9999999999999999999999999999999999998765
|
|
| >COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription] | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.4e-12 Score=111.62 Aligned_cols=110 Identities=21% Similarity=0.395 Sum_probs=95.5
Q ss_pred ccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhcc--cc-ccccccchhhc
Q psy1056 180 QVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFL--EN-SANMDLKIEKV 253 (590)
Q Consensus 180 ~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~--~~-~~~~~~~V~~i 253 (590)
.+|+.|++. ++++.+++++| .+++++.+||+++ ++++|-||.+|+... .. .+....+|.++
T Consensus 69 ~iM~spvv~v~pdDsi~~vv~lM---------~~~g~SQlPVi~~----~k~VGsItE~~iv~~~le~~e~i~~~~vr~v 135 (187)
T COG3620 69 TIMHSPVVSVSPDDSISDVVNLM---------RDKGISQLPVIEE----DKVVGSITENDIVRALLEGMESIRSLRVREV 135 (187)
T ss_pred hhccCCeeEECchhhHHHHHHHH---------HHcCCccCceeeC----CeeeeeecHHHHHHHHhccccchhhhhHHHH
Confidence 489999887 99999999999 9999999999997 999999999999722 22 34457889999
Q ss_pred cccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccC
Q psy1056 254 MTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRD 307 (590)
Q Consensus 254 m~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~ 307 (590)
|.. ++++++++++++.+..++..++ .+.|+ ++|+++||||+.|+++...
T Consensus 136 M~e--~fP~Vs~~~~l~vI~~LL~~~~--AVlV~-e~G~~vGIITk~DI~k~~~ 184 (187)
T COG3620 136 MGE--PFPTVSPDESLNVISQLLEEHP--AVLVV-ENGKVVGIITKADIMKLLA 184 (187)
T ss_pred hcC--CCCcCCCCCCHHHHHHHHhhCC--eEEEE-eCCceEEEEeHHHHHHHHh
Confidence 998 9999999999999999888775 46666 6899999999999988643
|
|
| >PRK10892 D-arabinose 5-phosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.3e-11 Score=128.97 Aligned_cols=114 Identities=15% Similarity=0.162 Sum_probs=96.1
Q ss_pred CCcccccc--cccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhcc--ccccccccc
Q psy1056 177 PDMQVIGG--NVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFL--ENSANMDLK 249 (590)
Q Consensus 177 ~~~~im~~--~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~--~~~~~~~~~ 249 (590)
+..++|.+ ++.+ ++++.++++.| .+++.+.+||+++ +|+++|+||.+|++.. ....+...+
T Consensus 203 ~V~dim~~~~~~~~v~~~~sl~~a~~~~---------~~~~~~~~vVvd~---~g~lvGivt~~Dl~~~~~~~~~~~~~~ 270 (326)
T PRK10892 203 RVSDIMHTGDEIPHVSKTASLRDALLEI---------TRKNLGMTVICDD---NMKIEGIFTDGDLRRVFDMGIDLRQAS 270 (326)
T ss_pred cHHHHhCCCCCCeEECCCCCHHHHHHHH---------HhcCCCeEEEEcC---CCcEEEEEecHHHHHHHhcCCCcccCC
Confidence 33457875 5444 99999999999 8888888888887 6999999999999732 221233578
Q ss_pred hhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccc
Q psy1056 250 IEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKS 305 (590)
Q Consensus 250 V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~ 305 (590)
|.++|++ +++++.+++++.+|++.|.+++++.+||+| +|+++|+||++|+++.
T Consensus 271 v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~lvGiit~~dil~~ 323 (326)
T PRK10892 271 IADVMTP--GGIRVRPGILAVDALNLMQSRHITSVLVAD-GDHLLGVLHMHDLLRA 323 (326)
T ss_pred HHHhcCC--CCEEECCCCCHHHHHHHHHHCCCcEEEEee-CCEEEEEEEhHHhHhc
Confidence 9999998 999999999999999999999999999997 5899999999999875
|
|
| >cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.7e-11 Score=105.97 Aligned_cols=103 Identities=16% Similarity=0.211 Sum_probs=89.3
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhcc--ccccccccchhhccccCCCeeEEcCC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFL--ENSANMDLKIEKVMTNVNEIISAQAG 266 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~--~~~~~~~~~V~~im~~~~~~~tv~~~ 266 (590)
++++.++.+.| .+.+++.+||+++ +++++|+++.+|+... ........++.++|.+ +++++.++
T Consensus 9 ~~~~~~~~~~~---------~~~~~~~~~V~d~---~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~ 74 (115)
T cd04593 9 TTPLREAAEQL---------IESKHGSALVVDR---DGGVVGIITLPDLLRALEADEAGEPSAVDEVATP--PLLTVHPD 74 (115)
T ss_pred CCCHHHHHHHH---------HhCCCcEEEEEcC---CCCEEEEEEHHHHHHHHhcccccccccHHHhccC--CceEECCC
Confidence 77899999999 8888999999998 7999999999999732 1221224568999998 99999999
Q ss_pred CCHHHHHHHHHhcCCCcceEEcCC--CceEEEEeecccccc
Q psy1056 267 ISLEEANVILEKSKKGKLPILNDK--GELIALIARTDLKKS 305 (590)
Q Consensus 267 ~~l~ea~~~m~~~~~~~lpVvd~~--g~l~Giit~~dll~~ 305 (590)
+++.++++.|.+++.+.+||+|++ |+++|+||.+|++++
T Consensus 75 ~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~~ 115 (115)
T cd04593 75 EPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLLA 115 (115)
T ss_pred CCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhcC
Confidence 999999999999999999999987 899999999999863
|
These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d |
| >cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.4e-11 Score=105.77 Aligned_cols=102 Identities=25% Similarity=0.442 Sum_probs=89.6
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhc--cccccccccchhhccccCCCeeEEcCC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDF--LENSANMDLKIEKVMTNVNEIISAQAG 266 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~--~~~~~~~~~~V~~im~~~~~~~tv~~~ 266 (590)
++++.++++.| .+++++.+||+++ +++++|++|.+|+.. .....+...++.++|.+ ++.++.++
T Consensus 9 ~~~~~~~~~~~---------~~~~~~~~~vvd~---~~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~--~~~~v~~~ 74 (113)
T cd04615 9 NTDIARAVAEM---------YTSGSRALPVVDD---KKRLVGIITRYDVLSYALESEELKDAKVREVMNS--PVITIDAN 74 (113)
T ss_pred CCcHHHHHHHH---------HHcCCceEeEEcC---CCCEEEEEEHHHHHHhhhhhhhhcCCcHHHhccC--CceEECCC
Confidence 67889999999 8888999999997 689999999999973 22222335689999988 89999999
Q ss_pred CCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 267 ISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 267 ~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
+++.++++.|.+++...+||+|++|+++|++|..|+++
T Consensus 75 ~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 75 DSIAKARWLMSNNNISRLPVLDDKGKVGGIVTEDDILR 112 (113)
T ss_pred CcHHHHHHHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence 99999999999999999999999999999999999875
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.6e-11 Score=128.04 Aligned_cols=112 Identities=19% Similarity=0.252 Sum_probs=96.8
Q ss_pred cccccc--ccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhc-cccccccccchhhc
Q psy1056 180 QVIGGN--VVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDF-LENSANMDLKIEKV 253 (590)
Q Consensus 180 ~im~~~--~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~-~~~~~~~~~~V~~i 253 (590)
++|.++ +.+ ++++.++.+.| .+++...+||+|+ +++++|+||.+|+.. .........++.++
T Consensus 201 ~im~~~~~~~~v~~~~sv~~a~~~~---------~~~~~~~~~Vvd~---~g~~iG~vt~~dl~~~~~~~~~~~~~v~~i 268 (321)
T PRK11543 201 HLMRRDDAIPQVALTASVMDAMLEL---------SRTGLGLVAVCDA---QQQVQGVFTDGDLRRWLVGGGALTTPVNEA 268 (321)
T ss_pred HHhccCCCCcEeCCCCCHHHHHHHH---------HHcCCCEEEEEcC---CCcEEEEecHHHHHHHHhCCCCcCCcHHHh
Confidence 477775 444 89999999999 8888899999998 799999999999872 21212235679999
Q ss_pred cccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccc
Q psy1056 254 MTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKS 305 (590)
Q Consensus 254 m~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~ 305 (590)
|++ +++++.+++++.+|++.|.+++...+||+|++|+++|+||+.|++++
T Consensus 269 m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 269 MTR--GGTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA 318 (321)
T ss_pred cCC--CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence 998 99999999999999999999999999999998999999999999875
|
|
| >cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.3e-11 Score=105.53 Aligned_cols=102 Identities=18% Similarity=0.319 Sum_probs=88.6
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhccccccccccchhhccccCCCeeEEcCCCC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGIS 268 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~ 268 (590)
+++++++.+.| .+.++..+||+++ +++++|+++..|+...........++.++|.. ++++++++++
T Consensus 9 ~~~i~e~~~~~---------~~~~~~~~~V~~~---~~~~~G~v~~~~l~~~~~~~~~~~~v~~~~~~--~~~~i~~~~~ 74 (111)
T cd04639 9 ADTLDDAADAL---------LATTQHEFPVVDG---DGHLVGLLTRDDLIRALAEGGPDAPVRGVMRR--DFPTVSPSAT 74 (111)
T ss_pred CCcHHHHHHHH---------HHcCCCcceEECC---CCcEEEEeeHHHHHHHHHhcCCCCcHHHHhcC--CCcEECCCCc
Confidence 77899999998 8888899999997 68999999999997321111134689999988 9999999999
Q ss_pred HHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 269 LEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 269 l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
+.++++.|.+++...+||+|++|+++|++|.+|+.+
T Consensus 75 ~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~ 110 (111)
T cd04639 75 LDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE 110 (111)
T ss_pred HHHHHHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence 999999999999999999998899999999999875
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.1e-11 Score=104.43 Aligned_cols=98 Identities=33% Similarity=0.475 Sum_probs=88.7
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhccccccccccchhhccccCCCeeEEcCCCC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGIS 268 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~ 268 (590)
++++.++.+.| .+++.+.+||+++ +++++|+++.+|+.... ...++.++|.. ++.+++++++
T Consensus 10 ~~~~~~a~~~~---------~~~~~~~~~V~d~---~~~~~G~v~~~~l~~~~----~~~~v~~~~~~--~~~~v~~~~~ 71 (108)
T cd04596 10 TDTVKDWHELN---------KETGHSRFPVVDE---KNKVVGIVTSKDVAGKD----PDTTIEKVMTK--NPITVNPKTS 71 (108)
T ss_pred CCCHHHHHHHH---------HHcCCCceeEECC---CCeEEEEecHHHHhccc----ccccHHHHhcC--CCeEECCCCC
Confidence 78899999999 8888889999997 79999999999997432 24679999988 8999999999
Q ss_pred HHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 269 LEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 269 l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
+.++++.|.+++...+||+|++|+++|++|..|+++
T Consensus 72 l~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~ 107 (108)
T cd04596 72 VASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVLK 107 (108)
T ss_pred HHHHHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence 999999999999999999999999999999999875
|
The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.2e-11 Score=104.06 Aligned_cols=99 Identities=21% Similarity=0.341 Sum_probs=88.2
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhccccccccccchhhccccCCCeeEEcCCCC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGIS 268 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~ 268 (590)
+.++.++.+.| .++++.++||+++ +++++|+++..|+...... ..++.++|.+ ++.+++++++
T Consensus 10 ~~~~~~~~~~~---------~~~~~~~~~v~d~---~~~~~G~v~~~dl~~~~~~---~~~v~~~~~~--~~~~v~~~~~ 72 (109)
T cd04583 10 DRTLAEAIKLM---------RDKKVDSLLVVDK---DNKLLGIVSLESLEQAYKE---AKSLEDIMLE--DVFTVQPDAS 72 (109)
T ss_pred CCCHHHHHHHH---------HHCCCceEEEEcC---CCcEEEEEEHHHHHHHhhc---CCcHhHhhcC--CceEECCCCc
Confidence 67889999999 8888999999998 6899999999999743221 2578999988 8999999999
Q ss_pred HHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 269 LEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 269 l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
+.++++.|.+++...+||+|++|+++|++|.+|+++
T Consensus 73 ~~~~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~ 108 (109)
T cd04583 73 LRDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD 108 (109)
T ss_pred HHHHHHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence 999999999999999999999999999999999875
|
OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz |
| >cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream | Back alignment and domain information |
|---|
Probab=99.23 E-value=9.9e-12 Score=110.91 Aligned_cols=103 Identities=18% Similarity=0.208 Sum_probs=87.8
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhc--cccccccccchhhccccCCCeeEEcCC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDF--LENSANMDLKIEKVMTNVNEIISAQAG 266 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~--~~~~~~~~~~V~~im~~~~~~~tv~~~ 266 (590)
++++.++++.| .+++++.+||+++ +++++|++|.+|+.. .........+++++|++ +++++.++
T Consensus 10 ~~~v~~a~~~m---------~~~~~~~~~Vvd~---~~~~~Gii~~~dl~~~~~~~~~~~~~~v~~im~~--~~~~v~~~ 75 (124)
T cd04608 10 TVTCAEAIEIL---------KEKGFDQLPVVDE---SGKILGMVTLGNLLSSLSSGKVQPSDPVSKALYK--QFKRVNKN 75 (124)
T ss_pred CCCHHHHHHHH---------HHcCCCEEEEEcC---CCCEEEEEEHHHHHHHHHHhccCCCCcHHHHhhc--cceecCCC
Confidence 77899999999 8889999999998 689999999999872 21212245799999999 99999999
Q ss_pred CCHHHHHHHHH---------hcCCCcceEEcCCCceEEEEeecccccc
Q psy1056 267 ISLEEANVILE---------KSKKGKLPILNDKGELIALIARTDLKKS 305 (590)
Q Consensus 267 ~~l~ea~~~m~---------~~~~~~lpVvd~~g~l~Giit~~dll~~ 305 (590)
+++.++.++|. +.+...+||+|++|+++|+||.+|+++.
T Consensus 76 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~~ 123 (124)
T cd04608 76 DTLGKLSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSY 123 (124)
T ss_pred CCHHHHHhhcccCCceEEEeccccccccccccccceEEEEehhHhhhh
Confidence 99999999653 4467889999988999999999999875
|
The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten |
| >cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.9e-11 Score=104.17 Aligned_cols=101 Identities=21% Similarity=0.331 Sum_probs=88.1
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhcccc-ccccccchhhccccCCCeeEEcCCC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLEN-SANMDLKIEKVMTNVNEIISAQAGI 267 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~-~~~~~~~V~~im~~~~~~~tv~~~~ 267 (590)
++++.++++.| .+.+++.+||+++ +++++|+++.+|+..... ......++.++|.+ +++++.+++
T Consensus 9 ~~~~~~~~~~~---------~~~~~~~~~v~d~---~~~~~G~v~~~dl~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~ 74 (111)
T cd04626 9 DASIREALHEM---------LKYNTNEIIVKDN---EEKLKGVVTFTDILDLDLFESFLEKKVFNIVSQ--DVFYVNEED 74 (111)
T ss_pred CccHHHHHHHH---------HHhCCCeEEEEcC---CCCEEEEEehHHhHHHHhhcccccCcHHHHhcC--CcEEEcCCC
Confidence 67889999999 8889999999997 699999999999974322 11124679999998 999999999
Q ss_pred CHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 268 SLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 268 ~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
++.++++.|.+++.+.+||+|+ |+++|+||..|++.
T Consensus 75 ~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~di~~ 110 (111)
T cd04626 75 TIDEALDIMREKQIGRLPVVDD-NKLIGVVRTKDILD 110 (111)
T ss_pred cHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEhHHhcc
Confidence 9999999999999999999997 99999999999875
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.3e-11 Score=103.62 Aligned_cols=102 Identities=56% Similarity=0.869 Sum_probs=86.7
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhccccccccccchhhccccCCCeeEEcC--C
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQA--G 266 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~--~ 266 (590)
++++.++.+.| .+.++..+||+|++..+++++|+++.+|+...... ..+++++|.+ ++.++.. +
T Consensus 10 ~~~~~~~~~~~---------~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~~~---~~~v~~~~~~--~~~~~~~~~~ 75 (114)
T cd04602 10 DHTVADVLEIK---------EKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLTDS---ETPLSEVMTP--REVLVVAPTG 75 (114)
T ss_pred CCCHHHHHHHH---------HHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhhcc---CCCHHHhcCC--CceEEECCCC
Confidence 77899999999 88888899999852113899999999999754322 3569999988 7777766 9
Q ss_pred CCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 267 ISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 267 ~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
+++.++++.|.+++.+.+||+|++|+++|+||++|+++
T Consensus 76 ~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~ 113 (114)
T cd04602 76 ITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK 113 (114)
T ss_pred CCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence 99999999999999999999999999999999999875
|
IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos |
| >cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.5e-11 Score=103.03 Aligned_cols=100 Identities=20% Similarity=0.412 Sum_probs=87.9
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhccccccccccchhhccccCCCeeEEcCCCC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGIS 268 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~ 268 (590)
+.++.++.+.| .+.+++.+||+++ ++++|+++..|+...........++.++|.+ ++++++++++
T Consensus 10 ~~~~~~~~~~~---------~~~~~~~~~V~d~----~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~ 74 (110)
T cd04595 10 EATIEEARELL---------LRYGHTALPVVEG----GRVVGIISRRDVEKALRHGLGHAPVKDYMST--DVVTVPPDTP 74 (110)
T ss_pred CCcHHHHHHHH---------HHcCCCeeeEeeC----CEEEEEEEHHHHHHHHhcccccCcHHHHhcC--CCEEECCCCc
Confidence 67899999999 8888899999996 8999999999987332222245789999998 8999999999
Q ss_pred HHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 269 LEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 269 l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
+.+++++|.+++.+.+||+| +|+++|+||..|+++
T Consensus 75 l~~~~~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~~ 109 (110)
T cd04595 75 LSEVQELMVEHDIGRVPVVE-DGRLVGIVTRTDLLR 109 (110)
T ss_pred HHHHHHHHHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence 99999999999999999999 799999999999875
|
CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.9e-11 Score=103.74 Aligned_cols=101 Identities=28% Similarity=0.412 Sum_probs=84.7
Q ss_pred hHHHHHHHHHhccccccccccccC-ceeeEEeeCCCCCCeEEEEEecchhhccc-c-ccccccchhhccccCCCeeEEcC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHG-FCGFPVTENGKLGEKLLGIVTSRDVDFLE-N-SANMDLKIEKVMTNVNEIISAQA 265 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~-~~~~pVvd~~~~~~~lvGivt~~Dl~~~~-~-~~~~~~~V~~im~~~~~~~tv~~ 265 (590)
+.++.++++.| .+++ .+.+||+++ ++++|+++..|+.... . ......++.++|.+ +++++++
T Consensus 9 ~~~~~~~~~~~---------~~~~~~~~~~v~~~----~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~--~~~~v~~ 73 (115)
T cd04620 9 DTPVADAIALM---------SQQGDSSCVLVVEK----GRLLGIFTERDIVRLTAIGKDLSDLPIGEVMTQ--PVVTLQE 73 (115)
T ss_pred CCcHHHHHHHH---------HhcCCCceEEEcCC----CcEEEEEeHHHHHHHHhcCCCccccCHHHhcCC--CcEEEec
Confidence 67889999998 7777 667777775 8999999999997321 1 11124679999988 8889988
Q ss_pred C--CCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 266 G--ISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 266 ~--~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
+ +++.++++.|.+++.+.+||+|++|+++|+||++|+++
T Consensus 74 ~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~ 114 (115)
T cd04620 74 SEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ 114 (115)
T ss_pred ccccCHHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence 7 78999999999999999999999999999999999976
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.3e-11 Score=102.92 Aligned_cols=102 Identities=20% Similarity=0.355 Sum_probs=89.1
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhc-cccccccccchhhccccCCCeeEEcCCC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDF-LENSANMDLKIEKVMTNVNEIISAQAGI 267 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~-~~~~~~~~~~V~~im~~~~~~~tv~~~~ 267 (590)
+.++.++.+.| .+.++..+||+++ +++++|+++..|+.. .........++.++|.+ +++++.+++
T Consensus 9 ~~~~~~~~~~~---------~~~~~~~~~v~d~---~~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~ 74 (112)
T cd04624 9 DTSIREAAKLM---------AEENVGSVVVVDP---DERPIGIVTERDIVRAVAAGIDLDTPVSEIMTR--DLVTVDPDE 74 (112)
T ss_pred CCcHHHHHHHH---------HHcCCCEEEEECC---CCCEEEEeeHHHHHHHHhccCCCccCHHHhccC--CCEEECCCC
Confidence 67889999999 8888999999998 699999999999863 22222235679999988 899999999
Q ss_pred CHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 268 SLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 268 ~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
++.++++.|.+++...+||+|++|++.|++|+.|+++
T Consensus 75 ~~~~~~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~ 111 (112)
T cd04624 75 PVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLVR 111 (112)
T ss_pred cHHHHHHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence 9999999999999999999999899999999999875
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.9e-11 Score=105.83 Aligned_cols=101 Identities=22% Similarity=0.332 Sum_probs=83.4
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCC-CeEEEEEecchhhcc-ccc-cc---------cccchhhcccc
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLG-EKLLGIVTSRDVDFL-ENS-AN---------MDLKIEKVMTN 256 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~-~~lvGivt~~Dl~~~-~~~-~~---------~~~~V~~im~~ 256 (590)
++++.++++.| .++++.++||+++ + ++++|+++.+|+... ... .. ....+.++|..
T Consensus 9 ~~~i~~a~~~~---------~~~~~~~~~V~d~---~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (123)
T cd04627 9 TASLFQAIEIL---------GSGGIHRVAVTEE---ESGEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRDLTIGTS 76 (123)
T ss_pred CCCHHHHHHHH---------hhCCcceEEEEeC---CCCcEEEEEEHHHHHHHHHHhHHhccchhhhhhhhhhhcccCcC
Confidence 67899999999 8888999999998 6 899999999998732 111 00 00122356777
Q ss_pred CCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccc
Q psy1056 257 VNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLK 303 (590)
Q Consensus 257 ~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll 303 (590)
++.++++++++.+|++.|.+++.+.+||+|++|+++|+||.+|+-
T Consensus 77 --~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~ 121 (123)
T cd04627 77 --DVISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVR 121 (123)
T ss_pred --CceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhh
Confidence 899999999999999999999999999999999999999999874
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.3e-11 Score=100.67 Aligned_cols=88 Identities=24% Similarity=0.382 Sum_probs=79.5
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhccccccccccchhhccccCCCeeEEcCCCC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGIS 268 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~ 268 (590)
++++.++++.| .+++++.+||+|+ +++++|+++.+|+.... .++++.++++
T Consensus 9 ~~~i~~a~~~~---------~~~~~~~~~V~d~---~~~~~Giv~~~dl~~~~-----------------~~~~v~~~~~ 59 (96)
T cd04614 9 ETPLPVAVRIM---------ELANVKALPVLDD---DGKLSGIITERDLIAKS-----------------EVVTATKRTT 59 (96)
T ss_pred CCcHHHHHHHH---------HHcCCCeEEEECC---CCCEEEEEEHHHHhcCC-----------------CcEEecCCCC
Confidence 78899999999 8899999999997 69999999999986321 3678999999
Q ss_pred HHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccc
Q psy1056 269 LEEANVILEKSKKGKLPILNDKGELIALIARTDLKKS 305 (590)
Q Consensus 269 l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~ 305 (590)
+.+++++|.+++.+.+||+|++|+++|+||++|++++
T Consensus 60 l~~a~~~m~~~~~~~lpVv~~~~~~~Giit~~di~~~ 96 (96)
T cd04614 60 VSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLLKP 96 (96)
T ss_pred HHHHHHHHHHhCCCeeeEECCCCcEEEEEEHHHhhcC
Confidence 9999999999999999999988999999999999863
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.4e-11 Score=103.16 Aligned_cols=101 Identities=15% Similarity=0.299 Sum_probs=86.1
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCC-CeEEEEEecchhhccccccccccchhhccccCCCeeEEcCCC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLG-EKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGI 267 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~-~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~ 267 (590)
+.++.++.+.| .+++++.+||+++ + ++++|++|..|+...........++.++|. ++.++.+++
T Consensus 9 ~~~i~~a~~~~---------~~~~~~~~~v~~~---~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~---~~~~v~~~~ 73 (111)
T cd04590 9 DDTLEEILELI---------AESGHSRFPVYDG---DLDNIIGVVHVKDLLRALAEGEEDLDLRDLLR---PPLFVPEST 73 (111)
T ss_pred CCCHHHHHHHH---------hhCCCceEEEECC---CCceEEEEEEHHHHHHHHHcCCCcCCHHHHhc---CCeecCCCC
Confidence 67899999999 8888999999998 6 899999999999833222111256777764 678999999
Q ss_pred CHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 268 SLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 268 ~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
++.++++.|.+++.+.+||+|++|+++|++|++|+++
T Consensus 74 ~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 110 (111)
T cd04590 74 PLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE 110 (111)
T ss_pred cHHHHHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence 9999999999999999999999999999999999875
|
CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, |
| >cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.5e-10 Score=116.23 Aligned_cols=165 Identities=18% Similarity=0.174 Sum_probs=116.4
Q ss_pred hHHHHHHHHHHcCCcEEEEecCC----Cch------hhHHHHHHHHHHhCCCceEEeccccC----cHHHHHHHHCCCCE
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQ----GNS------IYQIEMIKFIKKEYPDMQVIGGNVLF----GYQPRATLLNFIYQ 395 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~----G~~------~~~l~~i~~i~~~~~~vpvi~g~v~s----~~~a~~l~~~Gvd~ 395 (590)
+..+.++.+.++|+|.+.+|.+. .+. ..+.+.++.+++.. ++|+++|-... .+.++.+.++|+|+
T Consensus 113 ~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~-~iPv~vKl~p~~~~~~~~a~~l~~~Gadg 191 (325)
T cd04739 113 GWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAV-TIPVAVKLSPFFSALAHMAKQLDAAGADG 191 (325)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhcc-CCCEEEEcCCCccCHHHHHHHHHHcCCCe
Confidence 34566777778899999998752 111 22457788888876 79999985443 45778899999999
Q ss_pred EEEcccccccC-C-----Ccccccc-ch----hHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccC
Q psy1056 396 IEMIKFIKKEY-P-----DMQVIGR-NG----TAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAG 464 (590)
Q Consensus 396 i~v~~~~~~~~-~-----~~~~~g~-~~----~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~ 464 (590)
|.+........ + -..+||+ .+ .++..+.+..+..++|||+.|||+|+.|+.+.|.+|||+|++|+.+.
T Consensus 192 i~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~~ipIig~GGI~s~~Da~e~l~aGA~~Vqv~ta~~- 270 (325)
T cd04739 192 LVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRVKASLAASGGVHDAEDVVKYLLAGADVVMTTSALL- 270 (325)
T ss_pred EEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHHHHcccCCCEEEECCCCCHHHHHHHHHcCCCeeEEehhhh-
Confidence 97733221100 0 0123443 22 22333444444457999999999999999999999999999999872
Q ss_pred CCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecccceeEEeeCCchhchHHHHHhhhhhhC
Q psy1056 465 TSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCGLKHGC 544 (590)
Q Consensus 465 ~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~~~~~~~~~~~l~~~m 544 (590)
|+| -.++..+..+|..-|
T Consensus 271 ------------------~~g--------------------------------------------p~~~~~i~~~L~~~l 288 (325)
T cd04739 271 ------------------RHG--------------------------------------------PDYIGTLLAGLEAWM 288 (325)
T ss_pred ------------------hcC--------------------------------------------chHHHHHHHHHHHHH
Confidence 111 024778899999999
Q ss_pred cccCcCcHHHHHHh
Q psy1056 545 QDIGAKSLSNLRAM 558 (590)
Q Consensus 545 ~~~G~~~i~~l~~~ 558 (590)
...|.++++|++..
T Consensus 289 ~~~g~~~i~e~~G~ 302 (325)
T cd04739 289 EEHGYESVQQLRGS 302 (325)
T ss_pred HHcCCCCHHHHhcc
Confidence 99999999999865
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive. |
| >cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.4e-11 Score=101.42 Aligned_cols=97 Identities=11% Similarity=0.118 Sum_probs=86.3
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhccccccccccchhhccccCCCeeEEcCCCC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGIS 268 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~ 268 (590)
+.++.++++.| .+++.+.+||+++ +|+++|++|..|+.... ..++.++|.+ .+.++.++++
T Consensus 9 ~~~~~~a~~~~---------~~~~~~~~~v~d~---~g~~~Giv~~~dl~~~~-----~~~~~~~~~~--~~~~~~~~~~ 69 (106)
T cd04582 9 DDPLSDALGLM---------DDSDLRALTVVDA---DGQPLGFVTRREAARAS-----GGCCGDHAEP--FKVTVSVDDD 69 (106)
T ss_pred CCcHHHHHHHH---------HhcCCCEEEEECC---CCCEEEEEeHHHHHHhc-----ccchhhhccc--CCEEECCCCC
Confidence 67889999998 8888899999987 69999999999997432 2358899987 7889999999
Q ss_pred HHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 269 LEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 269 l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
+.++++.|.+++...+||+|++|+++|+||++|+++
T Consensus 70 ~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 70 LRIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD 105 (106)
T ss_pred HHHHHHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 999999999999999999999999999999999875
|
OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi |
| >cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.1e-11 Score=106.89 Aligned_cols=102 Identities=20% Similarity=0.313 Sum_probs=85.2
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhccccccc--ccc-------------chhhc
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSAN--MDL-------------KIEKV 253 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~~~~--~~~-------------~V~~i 253 (590)
+.++.++++.| .+++++.+||+|+ +++++|+++..|++....... ... ...+.
T Consensus 9 ~~~~~~a~~~~---------~~~~~~~i~V~d~---~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (126)
T cd04642 9 DERVLDAFKLM---------RKNNISGLPVVDE---KGKLIGNISASDLKGLLLSPDDLLLYRTITFKELSEKFTDSDGV 76 (126)
T ss_pred CccHHHHHHHH---------HHhCCCcccEECC---CCcEEEEEEHHHhhhhhcCcchhhcccchhhhhhhhhccccccc
Confidence 78899999999 8889999999998 699999999999983321111 111 12246
Q ss_pred cccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 254 MTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 254 m~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
|.. +++++++++++.+|+++|.+++.+.+||+|++++++|+||..|+++
T Consensus 77 ~~~--~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~ 125 (126)
T cd04642 77 KSR--PLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS 125 (126)
T ss_pred ccC--CCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence 666 8999999999999999999999999999999899999999999875
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain | Back alignment and domain information |
|---|
Probab=99.19 E-value=9.2e-11 Score=101.96 Aligned_cols=101 Identities=23% Similarity=0.353 Sum_probs=87.0
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhh--ccccccccc-cchhhccccCCCeeEEcC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVD--FLENSANMD-LKIEKVMTNVNEIISAQA 265 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~--~~~~~~~~~-~~V~~im~~~~~~~tv~~ 265 (590)
++++.++.+.| .+++.+.+||+++ ++++|+++.+|+. ......... .++.++|.+ ++.++++
T Consensus 9 ~~~~~~~~~~~---------~~~~~~~~~V~~~----~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~i~~~--~~~~v~~ 73 (113)
T cd04587 9 TTTVQEAAKLM---------REKRVSCVLVMDG----NKLVGIFTSKDIALRVVAQGLDPESTLVERVMTP--NPVCATS 73 (113)
T ss_pred CCCHHHHHHHH---------HHcCCCeEEEEEC----CEEEEEEEhHHHHHHHHhcCCCcCcCCHHHhcCC--CCeEEcC
Confidence 66889999998 8888889999986 8999999999986 221211122 679999988 8999999
Q ss_pred CCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 266 GISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 266 ~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
++++.++++.|.+++.+.+||+|++|+++|+||..|++.
T Consensus 74 ~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 74 DTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH 112 (113)
T ss_pred CCCHHHHHHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence 999999999999999999999998899999999999875
|
Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai |
| >cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain | Back alignment and domain information |
|---|
Probab=99.19 E-value=8.2e-11 Score=101.84 Aligned_cols=101 Identities=27% Similarity=0.410 Sum_probs=88.6
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhccccccccccchhhccccCCCeeEEcCCCC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGIS 268 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~ 268 (590)
++++.++.+.| .+.+++++||+++ ++++|+++..|+...........++.++|.. ++.+++++.+
T Consensus 9 ~~~~~~~~~~~---------~~~~~~~~~v~~~----~~~~G~v~~~~l~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~ 73 (110)
T cd04588 9 NATLREAARLF---------NTHHIHGAPVVDD----GKLVGIVTLSDIAHAIARGLELAKVKDVMTK--DVITIDEDEQ 73 (110)
T ss_pred CCCHHHHHHHH---------HHcCCCEEEEeeC----CEEEEEEEHHHHHHHHhccccccCHHHHhcC--CceEECCCCC
Confidence 67899999999 8888999999996 8999999999998432222223679999988 9999999999
Q ss_pred HHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 269 LEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 269 l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
+.++++.|.+.+.+.+||+|++|+++|+||..|+++
T Consensus 74 ~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 109 (110)
T cd04588 74 LYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILR 109 (110)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence 999999999999999999998899999999999875
|
Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. |
| >cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.5e-11 Score=102.91 Aligned_cols=102 Identities=26% Similarity=0.385 Sum_probs=89.3
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhcc-cc-ccccccchhhccccCCCeeEEcCC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFL-EN-SANMDLKIEKVMTNVNEIISAQAG 266 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~-~~-~~~~~~~V~~im~~~~~~~tv~~~ 266 (590)
++++.++++.| .+++++.+||+++ +++++|+++..|+... .. ......++.++|.+ ++.+++++
T Consensus 9 ~~~~~~~~~~~---------~~~~~~~~~v~~~---~~~~~G~v~~~~l~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~ 74 (114)
T cd04613 9 DTPLNELLDVI---------AHSPENNFPVVDD---DGRLVGIVSLDDIREILFDPSLYDLVVASDIMTK--PPVVVYPE 74 (114)
T ss_pred CCcHHHHHHHH---------HhCCCcceeEECC---CCCEEEEEEHHHHHHHHhcccccccEEHHHhccC--CCcEEcCC
Confidence 77899999999 8888999999998 6899999999999732 22 11123789999998 99999999
Q ss_pred CCHHHHHHHHHhcCCCcceEEcC-CCceEEEEeeccccc
Q psy1056 267 ISLEEANVILEKSKKGKLPILND-KGELIALIARTDLKK 304 (590)
Q Consensus 267 ~~l~ea~~~m~~~~~~~lpVvd~-~g~l~Giit~~dll~ 304 (590)
+++.++++.|.+.+.+.+||+|+ +|+++|++|..|+++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 75 DSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113 (114)
T ss_pred CCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence 99999999999999999999998 899999999999875
|
SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a |
| >COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.19 E-value=6e-11 Score=115.84 Aligned_cols=117 Identities=26% Similarity=0.472 Sum_probs=91.0
Q ss_pred CccccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccccccccCCCCCCCCccCCcccccccccccC
Q psy1056 23 HGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKDLSSPLTKKITLA 102 (590)
Q Consensus 23 ~~m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Did~l~~~~~~~~~~~~~~~~~l~~~~~~~ 102 (590)
++|+++++|+++++|+.+|.++|.+|+++.+||+|++ .+++||+|.+ |++-.-.. .++.+
T Consensus 249 dIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~---~rl~GiVt~~--dl~~~a~~----------~p~qr----- 308 (382)
T COG3448 249 DIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEH---RRLVGIVTQR--DLLKHARP----------SPFQR----- 308 (382)
T ss_pred HhcCccceecCCcCChHHHHHHHHHcCcccccccccc---cceeeeeeHH--HHhhccCc----------chHHH-----
Confidence 4899999999999999999999999999999999998 8999999999 55421000 00100
Q ss_pred CceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHHcCCcEEEEcCCCCchHHHHHHHHHhhhcCCCcccc
Q psy1056 103 APLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVI 182 (590)
Q Consensus 103 ~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~im 182 (590)
++.++. .....+|
T Consensus 309 ------------------------------------------------------------------lr~~~~-~~vk~im 321 (382)
T COG3448 309 ------------------------------------------------------------------LRFLRP-PTVKGIM 321 (382)
T ss_pred ------------------------------------------------------------------hhccCC-Ccccccc
Confidence 000000 1111378
Q ss_pred cccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhh
Q psy1056 183 GGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVD 238 (590)
Q Consensus 183 ~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~ 238 (590)
+.++.+ +++..+++-.. .+.+..++||+|+ +|+++||||..|+.
T Consensus 322 t~~v~tv~pdtpa~~lvp~l---------ad~g~H~lpvld~---~g~lvGIvsQtDli 368 (382)
T COG3448 322 TTPVVTVRPDTPAVELVPRL---------ADEGLHALPVLDA---AGKLVGIVSQTDLI 368 (382)
T ss_pred cCcceeecCCCcHHHHHHHh---------hcCCcceeeEEcC---CCcEEEEeeHHHHH
Confidence 877776 88888888888 8889999999999 89999999999997
|
|
| >cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein | Back alignment and domain information |
|---|
Probab=99.19 E-value=9.7e-11 Score=101.19 Aligned_cols=99 Identities=36% Similarity=0.583 Sum_probs=86.8
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhccccccccccchhhccccCCCeeEEcC-CC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQA-GI 267 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~-~~ 267 (590)
+.++.++.+.| .++++..+||+++ +++++|+++.+|+..... ...++.++|.+ ++.++.+ ++
T Consensus 10 ~~~~~~~~~~~---------~~~~~~~~~V~d~---~~~~~G~v~~~~l~~~~~---~~~~v~~~~~~--~~~~~~~~~~ 72 (110)
T cd04601 10 DATVAEALELM---------AEYGISGLPVVDD---DGKLVGIVTNRDLRFETD---LDKPVSEVMTP--ENLLTTVEGT 72 (110)
T ss_pred CCcHHHHHHHH---------HHcCCceEEEEcC---CCEEEEEEEhhHeeeccc---CCCCHHHhccc--CceEEecCCC
Confidence 67889999998 8888999999998 689999999999874432 24689999987 6777777 99
Q ss_pred CHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 268 SLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 268 ~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
++.++++.|.+++.+.+||+|++|+++|+||.+|+++
T Consensus 73 ~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~ 109 (110)
T cd04601 73 SLEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK 109 (110)
T ss_pred CHHHHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence 9999999999999999999999999999999999876
|
IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. |
| >cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.18 E-value=9.4e-11 Score=101.70 Aligned_cols=101 Identities=19% Similarity=0.393 Sum_probs=87.8
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhc-cccc--cccccchhhccccCCCeeEEcC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDF-LENS--ANMDLKIEKVMTNVNEIISAQA 265 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~-~~~~--~~~~~~V~~im~~~~~~~tv~~ 265 (590)
+.++.++.+.| .++++..+||+++ +++++|+++.+|+.. .... .....++.++|.+ ++.++++
T Consensus 9 ~~~~~~~~~~~---------~~~~~~~~~V~~~---~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~ 74 (113)
T cd04623 9 DATVAEAAKLM---------AEKNIGAVVVVDD---GGRLVGIFSERDIVRKVALRGASALDTPVSEIMTR--NVITVTP 74 (113)
T ss_pred CCcHHHHHHHH---------HHcCCCeEEEECC---CCCEEEEEehHHHHHHHhhcCCCccccCHHHhcCC--CcEEECC
Confidence 67889999999 8889999999987 689999999999972 2211 1124679999988 8999999
Q ss_pred CCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 266 GISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 266 ~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
++++.++++.|.+++.+.+||+++ |+++|+||..|+++
T Consensus 75 ~~~~~~~l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 112 (113)
T cd04623 75 DDTVDEAMALMTERRFRHLPVVDG-GKLVGIVSIGDVVK 112 (113)
T ss_pred CCcHHHHHHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhc
Confidence 999999999999999999999987 99999999999875
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain | Back alignment and domain information |
|---|
Probab=99.18 E-value=8.2e-11 Score=101.85 Aligned_cols=100 Identities=23% Similarity=0.369 Sum_probs=87.6
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhccccccccccchhhccccCCCeeEEcCCCC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGIS 268 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~ 268 (590)
++++.++++.| .++++..+||+++ +++++|++|..|+....... ..++.++|.+ ++.++.++++
T Consensus 10 ~~~~~~~~~~~---------~~~~~~~~~V~d~---~~~~~G~v~~~~l~~~~~~~--~~~~~~~~~~--~~~~v~~~~~ 73 (110)
T cd04605 10 DASIKEAAKLM---------IEENINHLPVVDE---DGRLVGIVTSWDISKAVARD--KKSVEDIMTR--NVITATPDEP 73 (110)
T ss_pred CCCHHHHHHHH---------HhCCCceEEEECC---CCcEEEEEeHHHHHHHHhhC--ccCHHHhcCC--CCeEECCCCc
Confidence 77899999999 8889999999998 69999999999997321111 2459999988 8999999999
Q ss_pred HHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 269 LEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 269 l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
++++++.|.+++.+.+||++++|+++|+||+.|+++
T Consensus 74 l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~ 109 (110)
T cd04605 74 IDVAARKMERHNISALPVVDAENRVIGIITSEDISK 109 (110)
T ss_pred HHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence 999999999999999999999999999999999864
|
Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.1e-10 Score=101.14 Aligned_cols=99 Identities=22% Similarity=0.343 Sum_probs=86.6
Q ss_pred hHHHHHHHHHhccccccccccccC-----ceeeEEeeCCCCCCeEEEEEecchhhccccccccccchhhccccCCCeeEE
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHG-----FCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISA 263 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~-----~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv 263 (590)
++++.++++.| .+++ +..+||+++ +++++|+++.+|+.... ...++.++|.+ +++++
T Consensus 5 ~~~~~~~~~~~---------~~~~~~~~~~~~~~vvd~---~~~~~G~v~~~~l~~~~----~~~~v~~~~~~--~~~~i 66 (109)
T cd04606 5 DWTVGEALEYL---------RRNADDPETIYYIYVVDE---EGRLLGVVSLRDLLLAD----PDTPVSDIMDT--DVISV 66 (109)
T ss_pred cCcHHHHHHHH---------HhccCcccceeEEEEECC---CCCEEEEEEHHHHhcCC----CcchHHHHhCC--CCeEE
Confidence 56788898888 7666 578999987 68999999999987432 24679999988 89999
Q ss_pred cCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccc
Q psy1056 264 QAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKS 305 (590)
Q Consensus 264 ~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~ 305 (590)
.+++++.++++.|.+++.+.+||+|++|+++|+||..|+++.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~ 108 (109)
T cd04606 67 SADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVIDV 108 (109)
T ss_pred cCCCCHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHHhhhh
Confidence 999999999999999999999999999999999999999875
|
MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.1e-10 Score=100.96 Aligned_cols=101 Identities=25% Similarity=0.376 Sum_probs=88.2
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhccccccc-cccchhhccccCCCeeEEcCCC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSAN-MDLKIEKVMTNVNEIISAQAGI 267 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~~~~-~~~~V~~im~~~~~~~tv~~~~ 267 (590)
++++.++++.| .++++..+||+++ ++++|+++.+|+........ ...++.++|.+ +++++++++
T Consensus 9 ~~~~~~~~~~~---------~~~~~~~~~V~~~----~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~ 73 (111)
T cd04611 9 DTSLAEAASRM---------RERRISSIVVVDD----GRPLGIVTERDILRLLASGPDLQTPVGEVMSS--PLLTVPADT 73 (111)
T ss_pred CCcHHHHHHHH---------HHcCCCEEEEeeC----CEEEEEEeHHHHHHHHhcCCCCCcCHHHhcCC--CceEECCCC
Confidence 67899999999 8888889999986 89999999999973322111 35789999988 899999999
Q ss_pred CHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 268 SLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 268 ~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
++.++++.|.+.+.+.+||+|++|+++|+||.+|+++
T Consensus 74 ~l~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~ 110 (111)
T cd04611 74 SLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ 110 (111)
T ss_pred CHHHHHHHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence 9999999999999999999999899999999999875
|
PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB |
| >cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.6e-11 Score=103.40 Aligned_cols=101 Identities=24% Similarity=0.396 Sum_probs=85.9
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhccc-cc---cc---cccchhhccccCCCee
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLE-NS---AN---MDLKIEKVMTNVNEII 261 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~-~~---~~---~~~~V~~im~~~~~~~ 261 (590)
++++.++++.| .+++++.+||+++ +++++|+++.+|+.... .. .. ...++.++|.+ ++.
T Consensus 9 ~~~~~~~~~~~---------~~~~~~~~~V~d~---~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~ 74 (116)
T cd04643 9 TNTLRHALLVL---------TKHGYSAIPVLDK---EGKYVGTISLTDILWKLKGLENLDLERLVDLKVIDVMNT--DVP 74 (116)
T ss_pred CCcHHHHHHHH---------HHCCCceeeeECC---CCcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHHHhcC--CCc
Confidence 77899999999 8889999999997 68999999999997321 11 11 14679999998 899
Q ss_pred EEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccc
Q psy1056 262 SAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKS 305 (590)
Q Consensus 262 tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~ 305 (590)
++.+++++.++++.|.+++ .+||+|++|+++|++|..|++++
T Consensus 75 ~v~~~~~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~~ 116 (116)
T cd04643 75 VIIDDADIEEILHLLIDQP--FLPVVDDDGIFIGIITRREILKA 116 (116)
T ss_pred eecCCCCHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhcC
Confidence 9999999999999998865 59999999999999999998763
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.17 E-value=9.1e-11 Score=103.57 Aligned_cols=102 Identities=28% Similarity=0.484 Sum_probs=88.9
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhcccccc-----------ccccchhhccccC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSA-----------NMDLKIEKVMTNV 257 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~~~-----------~~~~~V~~im~~~ 257 (590)
+.++.++.+.| .+.+++.+||+++ +++++|+++.+|+....... ....++.++|..
T Consensus 9 ~~~~~~~~~~~---------~~~~~~~~~V~~~---~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~- 75 (122)
T cd04803 9 DDSLADAEELM---------REHRIRHLPVVNE---DGKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAEVMKT- 75 (122)
T ss_pred CCcHHHHHHHH---------HHcCcccccEECC---CCCEEEEEEHHHHHHHhccccccccccccccccCcCHHHhhCC-
Confidence 77899999999 8889999999997 68999999999987321110 134679999988
Q ss_pred CCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 258 NEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 258 ~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
+++++++++++.++++.|.+++.+.+||+|++|+++|++|..|+++
T Consensus 76 -~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~ 121 (122)
T cd04803 76 -DVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR 121 (122)
T ss_pred -CCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhc
Confidence 8999999999999999999999999999998899999999999875
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.2e-10 Score=101.30 Aligned_cols=102 Identities=22% Similarity=0.307 Sum_probs=88.1
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhcc--ccccccccchhhccccCCCeeEEcCC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFL--ENSANMDLKIEKVMTNVNEIISAQAG 266 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~--~~~~~~~~~V~~im~~~~~~~tv~~~ 266 (590)
++++.++.+.+ .+.+++.+||+++ +++++|+++.+++... ........++.++|.+ ++.+++++
T Consensus 10 ~~~~~~~~~~~---------~~~~~~~~~v~d~---~~~~~G~v~~~~i~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~ 75 (114)
T cd04604 10 DTSLKDALLEM---------SRKGLGMTAVVDE---DGRLVGIFTDGDLRRALEKGLDILTLPVADVMTR--NPKTIDPD 75 (114)
T ss_pred CCcHHHHHHHH---------HhcCccEEEEEcC---CCCEEEEechHHHHHHHhccCccccCCHHHhhcc--CCeEECCC
Confidence 77889999888 7778899999998 6899999999998722 1222123579999998 88999999
Q ss_pred CCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 267 ISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 267 ~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
+++.++++.|.+++...+||+|++|+++|+||..||++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~ 113 (114)
T cd04604 76 ALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLLR 113 (114)
T ss_pred CcHHHHHHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence 99999999999999999999998899999999999875
|
These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct |
| >cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.5e-11 Score=106.07 Aligned_cols=102 Identities=15% Similarity=0.224 Sum_probs=85.1
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhcc------cc--ccccccchhhccccCCCe
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFL------EN--SANMDLKIEKVMTNVNEI 260 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~------~~--~~~~~~~V~~im~~~~~~ 260 (590)
++++.++++.| .++++..+||+++ +++++|+++.+|++.. .. ......+++++|++ +.
T Consensus 9 ~~~i~~a~~~~---------~~~~~~~~~V~d~---~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~im~~--~~ 74 (126)
T cd04640 9 DTSIDEALELM---------IKHGVRLLLVVDS---DDNFIGVITAVDLLGEEPIKRIQEGGISRSELTVADVMTP--KE 74 (126)
T ss_pred CCcHHHHHHHH---------HHcCCcEEEEEcC---CCcEEEEEEHHHHhhChhhHHHHHcCCCchheEHHHhcCc--hh
Confidence 67899999999 8889999999997 6899999999998731 11 12235779999986 55
Q ss_pred eEE------cCCCCHHHHHHHHHhcCCCcceEEcCC-CceEEEEeeccccc
Q psy1056 261 ISA------QAGISLEEANVILEKSKKGKLPILNDK-GELIALIARTDLKK 304 (590)
Q Consensus 261 ~tv------~~~~~l~ea~~~m~~~~~~~lpVvd~~-g~l~Giit~~dll~ 304 (590)
.++ .+++++.++++.|.+++.+.+||+|++ |+++|+||..|+++
T Consensus 75 ~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 75 DLKALDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred hhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence 433 368999999999999999999999987 89999999999875
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.17 E-value=1e-10 Score=103.74 Aligned_cols=103 Identities=25% Similarity=0.477 Sum_probs=88.7
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCC-CeEEEEEecchhhcc-cccc------------ccccchhhcc
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLG-EKLLGIVTSRDVDFL-ENSA------------NMDLKIEKVM 254 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~-~~lvGivt~~Dl~~~-~~~~------------~~~~~V~~im 254 (590)
+.++.++++.| .+.++..+||+++ + ++++|+++.+|+... .... ....++.++|
T Consensus 9 ~~~~~~~~~~~---------~~~~~~~i~V~d~---~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (125)
T cd04631 9 TTPIMEAAKIM---------VRNGFRRLPVVDE---GTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRSIM 76 (125)
T ss_pred CCcHHHHHHHH---------HHcCcccceeEeC---CCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHHHh
Confidence 67889999999 8888899999997 6 899999999999722 1111 1235799999
Q ss_pred ccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccc
Q psy1056 255 TNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKS 305 (590)
Q Consensus 255 ~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~ 305 (590)
.+ +++++++++++.++++.|.+.+.+.+||+|++|+++|+||..|++++
T Consensus 77 ~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~~ 125 (125)
T cd04631 77 TR--NVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLKA 125 (125)
T ss_pred cC--CceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhcC
Confidence 88 89999999999999999999999999999988999999999998763
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.2e-10 Score=102.69 Aligned_cols=103 Identities=27% Similarity=0.481 Sum_probs=88.8
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhccc--c----cc-----ccccchhhccccC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLE--N----SA-----NMDLKIEKVMTNV 257 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~--~----~~-----~~~~~V~~im~~~ 257 (590)
++++.++++.| .+.+++++||+++ +++++|+++..|++... . .. ....++.++|.+
T Consensus 9 ~~~~~~~~~~~---------~~~~~~~~~V~d~---~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 75 (122)
T cd04635 9 DDPVSKVWDLM---------LESGFTGLPVVQK---AGELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKIMST- 75 (122)
T ss_pred CCcHHHHHHHH---------HHcCCCcccEECC---CCcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHHHhcC-
Confidence 67889999999 8888999999997 79999999999997321 0 00 134678999988
Q ss_pred CCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccc
Q psy1056 258 NEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKS 305 (590)
Q Consensus 258 ~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~ 305 (590)
+++++++++++.++++.|.+++.+.+||+|++|+++|++|..|++++
T Consensus 76 -~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~~ 122 (122)
T cd04635 76 -PVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLKA 122 (122)
T ss_pred -CCeeECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhcC
Confidence 89999999999999999999999999999999999999999998863
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.16 E-value=1e-10 Score=105.98 Aligned_cols=101 Identities=23% Similarity=0.420 Sum_probs=87.6
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhcccc-c-cc---------------------
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLEN-S-AN--------------------- 245 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~-~-~~--------------------- 245 (590)
++++.++++.| .+++++.+||+|+ +++++|+++..|+..... . ..
T Consensus 9 ~~~~~~a~~~~---------~~~~~~~l~V~d~---~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (135)
T cd04621 9 EHSLLHVVDEM---------EKNGVGRVIVVDD---NGKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYV 76 (135)
T ss_pred CCcHHHHHHHH---------HHcCCCcceEECC---CCCEEEEEeHHHHHHHhhcccccccchhhhhhhhhccccccccc
Confidence 77899999999 8888999999998 799999999999973211 1 00
Q ss_pred --cccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 246 --MDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 246 --~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
...+++++|.+ +++++.+++++.++++.|.+++.+.+||+++ |+++|+||..|+++
T Consensus 77 ~~~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~ 134 (135)
T cd04621 77 KEVPLVAEDIMTE--EIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR 134 (135)
T ss_pred ccccccHHHhcCC--CCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence 13579999998 8999999999999999999999999999987 99999999999875
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain | Back alignment and domain information |
|---|
Probab=99.16 E-value=8.5e-11 Score=106.15 Aligned_cols=102 Identities=22% Similarity=0.397 Sum_probs=87.9
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhcc-ccc-----------------------c
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFL-ENS-----------------------A 244 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~-~~~-----------------------~ 244 (590)
++++.++++.| .++++.++||+++ +++++|+++.+|+... ... .
T Consensus 10 ~~~~~~~~~~~---------~~~~~~~~~Vvd~---~~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (135)
T cd04586 10 ETSVAEAARLM---------LDNHISGLPVVDD---DGRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVR 77 (135)
T ss_pred CCCHHHHHHHH---------HHcCCCCceEECC---CCCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHH
Confidence 67889999999 8889999999998 6899999999998621 110 0
Q ss_pred ccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccc
Q psy1056 245 NMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKS 305 (590)
Q Consensus 245 ~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~ 305 (590)
....++.++|.+ +++++++++++.++++.|.+++.+.+||+| +|+++|+||+.|++++
T Consensus 78 ~~~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~~ 135 (135)
T cd04586 78 SHGRKVADVMTR--PVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLLRA 135 (135)
T ss_pred hcCCCHHHHhCC--CceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHhhhcC
Confidence 123679999988 899999999999999999999999999999 8999999999998763
|
BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.9e-10 Score=103.91 Aligned_cols=129 Identities=18% Similarity=0.177 Sum_probs=97.2
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCch-h-hHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCC
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNS-I-YQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYP 407 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~-~-~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~ 407 (590)
...+.+++|.++|++++.+|.....+ . .+.+.++. .++|+... ..++.|.|++..+.++|+|+| .+|..
T Consensus 86 ptlkeVd~L~~~Ga~IIA~DaT~R~RP~~~~~~~i~~--~k~~~~l~-MAD~St~ee~l~a~~~G~D~I----GTTLs-- 156 (229)
T COG3010 86 PTLKEVDALAEAGADIIAFDATDRPRPDGDLEELIAR--IKYPGQLA-MADCSTFEEGLNAHKLGFDII----GTTLS-- 156 (229)
T ss_pred ccHHHHHHHHHCCCcEEEeecccCCCCcchHHHHHHH--hhcCCcEE-EeccCCHHHHHHHHHcCCcEE----ecccc--
Confidence 34678899999999999999865433 2 23445554 45555544 459999999999999999999 66644
Q ss_pred Ccccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCCCC
Q psy1056 408 DMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSE 467 (590)
Q Consensus 408 ~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~~e 467 (590)
|+++.+. ....-..+.+.+.+.+.++||.|.+.||.++.+|+.+||++|.+|+++.+.+|
T Consensus 157 GYT~~~~~~~~pDf~lvk~l~~~~~~vIAEGr~~tP~~Ak~a~~~Ga~aVvVGsAITRp~~ 217 (229)
T COG3010 157 GYTGYTEKPTEPDFQLVKQLSDAGCRVIAEGRYNTPEQAKKAIEIGADAVVVGSAITRPEE 217 (229)
T ss_pred cccCCCCCCCCCcHHHHHHHHhCCCeEEeeCCCCCHHHHHHHHHhCCeEEEECcccCCHHH
Confidence 4555444 33343444444445789999999999999999999999999999999987654
|
|
| >cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.1e-10 Score=98.66 Aligned_cols=97 Identities=27% Similarity=0.517 Sum_probs=86.4
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhccccccccccchhhccccCCCeeEEcCCCC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGIS 268 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~ 268 (590)
+.++.++++.| .+.+...+||+++ ++++|+++..|+.... ...++.++|.+ ++.++.++++
T Consensus 10 ~~~~~~~~~~~---------~~~~~~~~~v~d~----~~~~g~v~~~~l~~~~----~~~~~~~~~~~--~~~~v~~~~~ 70 (107)
T cd04610 10 DNTVKDVIKLI---------KETGHDGFPVVDN----GKVVGIVSARDLLGKD----PDETVEEIMSK--DLVVAVPEMD 70 (107)
T ss_pred CCcHHHHHHHH---------HHcCCCeeeEeEC----CEEEEEEEHHHhhccC----ccccHHHhCCC--CCeEECCCCC
Confidence 67889999998 7777888999986 8999999999997432 23579999988 8999999999
Q ss_pred HHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 269 LEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 269 l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
+.++++.|.+++...+||+|++|+++|+++..|+++
T Consensus 71 l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~ 106 (107)
T cd04610 71 IMDAARVMFRTGISKLPVVDENNNLVGIITNTDVIR 106 (107)
T ss_pred HHHHHHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence 999999999999999999999999999999999886
|
CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain | Back alignment and domain information |
|---|
Probab=99.14 E-value=2e-10 Score=99.54 Aligned_cols=100 Identities=25% Similarity=0.394 Sum_probs=86.9
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhc--cccccccccchhhccccCCCeeEEcCC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDF--LENSANMDLKIEKVMTNVNEIISAQAG 266 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~--~~~~~~~~~~V~~im~~~~~~~tv~~~ 266 (590)
++++.++.+.| .+++++.+||+++ ++++|+++..|+.. .........++.++|.. ++++++++
T Consensus 9 ~~~~~~~~~~~---------~~~~~~~i~V~~~----~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~--~~~~v~~~ 73 (111)
T cd04800 9 DTTIREAARLM---------TEHRVSSLLVVDD----GRLVGIVTDRDLRNRVVAEGLDPDTPVSEVMTA--PPITIPPD 73 (111)
T ss_pred CCcHHHHHHHH---------HHcCCCeEEEEEC----CEEEEEEEhHHHHHHHhccCCCccCCHHHHhCC--CCeEECCC
Confidence 77899999998 8888899999986 89999999999873 22222234679999988 99999999
Q ss_pred CCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 267 ISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 267 ~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
+++.++++.|.+++.+.+||+++ |+++|++|.+|+++
T Consensus 74 ~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~ 110 (111)
T cd04800 74 ATVFEALLLMLERGIHHLPVVDD-GRLVGVISATDLLR 110 (111)
T ss_pred CcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence 99999999999999999999987 99999999999875
|
Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa |
| >cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.1e-10 Score=101.59 Aligned_cols=101 Identities=20% Similarity=0.359 Sum_probs=87.4
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhcc--cc--ccccccchhhccccCCCeeEEc
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFL--EN--SANMDLKIEKVMTNVNEIISAQ 264 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~--~~--~~~~~~~V~~im~~~~~~~tv~ 264 (590)
+.++.++.+.| .+++++.+||+++ +++++|+++..|+... .. ......++.++|.+ +++++.
T Consensus 9 ~~~~~~~~~~~---------~~~~~~~~~V~~~---~~~~~G~v~~~~l~~~~~~~~~~~~~~~~v~~~~~~--~~~~v~ 74 (114)
T cd04629 9 DMSVTEAVEKL---------LKSKISGGPVVDD---NGNLVGFLSEQDCLKQLLESSYHCDGVATVRDIMTT--EVLTVS 74 (114)
T ss_pred CCCHHHHHHHH---------HhcCCCCccEECC---CCeEEEEeehHHHHHHhhhhhhccCCCccHHHHhcc--CceEEC
Confidence 67899999998 8888889999997 6899999999998721 11 11134679999998 899999
Q ss_pred CCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 265 AGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 265 ~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
+++++.++++.|.+++.+.+||+|+ |+++|+||.+|+++
T Consensus 75 ~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 113 (114)
T cd04629 75 PDDSIVDLAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLR 113 (114)
T ss_pred CCCcHHHHHHHHHHhCCCccCEEEC-CEEEEEEEHHHHhc
Confidence 9999999999999999999999997 99999999999875
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >COG0516 GuaB IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.6e-10 Score=108.97 Aligned_cols=167 Identities=37% Similarity=0.544 Sum_probs=135.5
Q ss_pred HHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecCC
Q psy1056 360 EMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADGG 438 (590)
Q Consensus 360 ~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GG 438 (590)
..+.+++..++. +.+++|.+.+.+..+..+| +.+++.+..+ .+.++ +.++..++...++.. ++++++||
T Consensus 3 ~~~~~~k~~~~~--ltfddVll~p~~s~v~p~~-~~vkt~i~~~------i~l~iP~vSA~MDtVtea~mA-i~ma~~GG 72 (170)
T COG0516 3 MQVLKIKKARPG--LTFDDVLLLPAASDVAPAG-VDVKTGLGPG------IGVNIPQVSAAMDTVTEARMA-IAMARDGG 72 (170)
T ss_pred hHHHHHHHhCCC--ceeccCcchhhHHhhccCC-CeeEecccCC------cccCchHHHHHHHHHHHHHHh-HHHHHcCC
Confidence 345667777655 8899999999999999999 6565433221 34566 788887776555443 89999999
Q ss_pred CCCHHHHHHHHHcCCCEEEECccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeeccc
Q psy1056 439 VQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQG 518 (590)
Q Consensus 439 i~~~~di~kalalGA~~v~~g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~eg 518 (590)
|. ||.|.+++ +|+|+++... + |||+|..++. +|+. ...+++|
T Consensus 73 IG---------------Vih~nm~~--~e~~~~v~~v-----~--~~~~~~~~~~-----------~~~~---~~~~~~~ 114 (170)
T COG0516 73 IG---------------VMHGNMLA--EESPGEYLYQ-----K--RGMGSIDAMQ-----------RYFS---SVLVAQG 114 (170)
T ss_pred eE---------------EEeccccH--hhCCCceEEE-----E--ecCCCccccc-----------cccc---cccceec
Confidence 92 99999998 9999998776 1 9999987743 4555 3468899
Q ss_pred ceeEEeeCCchhchHHHHHhhhhhhCcccCcCcHHHHHHhhccCceEEEEEecCccccCCCCccc
Q psy1056 519 VSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRAMMYSGELKFEKRTLCAQNEGSVHGLY 583 (590)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~l~~~m~~~G~~~i~~l~~~~~~~~~~~~~~~~~~~~e~~~h~~~ 583 (590)
+++.+ |++++.+.+.++..++++.|.|+|+.++.+++.+ +.|+.++.+ |+++|++.
T Consensus 115 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~---~~~~~~~~ 170 (170)
T COG0516 115 VSGVV-DKGSIKKFIPYLYGGLQSSCQYIGCRSLTLLKEN-----VRFEFRTAS---EGGVHNLH 170 (170)
T ss_pred ccccc-cccchhhhhHHHHHHHHHHhhhcccHhHHHHHhc-----ccEEEEecc---ccCCcccC
Confidence 99955 9999999999999999999999999999999987 899999998 99999863
|
|
| >COG0517 FOG: CBS domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.5e-10 Score=99.82 Aligned_cols=100 Identities=26% Similarity=0.474 Sum_probs=87.6
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhcccccccccc-chhhccccCCCeeEEcCCC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDL-KIEKVMTNVNEIISAQAGI 267 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~~~~~~~-~V~~im~~~~~~~tv~~~~ 267 (590)
+.++.++...| .++++..+||++. ++++|++|.+|+........... ++.++|+. +++++.++.
T Consensus 15 ~~~~~~a~~~m---------~~~~~~~~~v~~~----~~l~Giit~~di~~~~~~~~~~~~~v~~v~~~--~~~~~~~~~ 79 (117)
T COG0517 15 DTSVRDALLLM---------SENGVSAVPVVDD----GKLVGIITERDILRALAAGGKRLLPVKEVMTK--PVVTVDPDT 79 (117)
T ss_pred CCcHHHHHHHH---------HHcCCCEEEEeeC----CEEEEEEEHHHHHHHHhccCCccccHHHhccC--CcEEECCCC
Confidence 88999999999 9999999999986 68999999999984332211122 69999998 999999999
Q ss_pred CHHHHHHHHHh-cCCCcceEEcCCC-ceEEEEeecccc
Q psy1056 268 SLEEANVILEK-SKKGKLPILNDKG-ELIALIARTDLK 303 (590)
Q Consensus 268 ~l~ea~~~m~~-~~~~~lpVvd~~g-~l~Giit~~dll 303 (590)
++.++.+.|.+ ++++.+||+|+++ +++|++|.+|++
T Consensus 80 ~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~ 117 (117)
T COG0517 80 PLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL 117 (117)
T ss_pred CHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence 99999999999 7999999999986 999999999974
|
|
| >cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.9e-10 Score=97.45 Aligned_cols=96 Identities=30% Similarity=0.468 Sum_probs=85.7
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhccccccccccchhhccccCCCeeEEcCCCC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGIS 268 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~ 268 (590)
++++.++++.| .++++..+||+++ ++++|+++..|+..... ..++.++|.+ ++.+++++++
T Consensus 9 ~~~~~~~~~~~---------~~~~~~~~~V~d~----~~~~Giv~~~~l~~~~~----~~~~~~~~~~--~~~~v~~~~~ 69 (105)
T cd04599 9 LDSVGRAARLM---------EKHRIGGLPVVED----GKLVGIITSRDVRRAHP----NRLVADAMTR--EVVTISPEAS 69 (105)
T ss_pred CCcHHHHHHHH---------HHcCCCEEEEEEC----CEEEEEEehHHhhcccc----cCCHHHHccC--CCEEECCCCC
Confidence 67888999998 8888889999985 89999999999975322 3569999988 9999999999
Q ss_pred HHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 269 LEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 269 l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
+.++++.|.+++.+.+||+|+ |+++|++|.+|++.
T Consensus 70 l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~~l~~ 104 (105)
T cd04599 70 LLEAKRLMEEKKIERLPVLRE-RKLVGIITKGTIAL 104 (105)
T ss_pred HHHHHHHHHHcCCCEeeEEEC-CEEEEEEEHHHhcc
Confidence 999999999999999999997 99999999999874
|
The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.9e-10 Score=102.73 Aligned_cols=102 Identities=22% Similarity=0.396 Sum_probs=87.3
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhcc--cc-------------ccccccchhhc
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFL--EN-------------SANMDLKIEKV 253 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~--~~-------------~~~~~~~V~~i 253 (590)
+.++.++++.| .+.+++.+||+++ +++++|++|.+|+... .. ......++.++
T Consensus 9 ~~~~~~~~~~~---------~~~~~~~~~Vv~~---~~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (128)
T cd04632 9 DDSVGKAINVL---------REHGISRLPVVDD---NGKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYDA 76 (128)
T ss_pred CCCHHHHHHHH---------HHcCCCEEEEECC---CCcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHHH
Confidence 77899999999 8889999999998 6999999999999721 11 00124579999
Q ss_pred cccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEc--CCCceEEEEeeccccc
Q psy1056 254 MTNVNEIISAQAGISLEEANVILEKSKKGKLPILN--DKGELIALIARTDLKK 304 (590)
Q Consensus 254 m~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd--~~g~l~Giit~~dll~ 304 (590)
|.+ +++++++++++.++++.|.+++...+||++ ++|+++|+||++|+++
T Consensus 77 ~~~--~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~ 127 (128)
T cd04632 77 MSS--PVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR 127 (128)
T ss_pred hcC--CCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence 988 899999999999999999999999999984 4799999999999875
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.12 E-value=8.9e-11 Score=124.32 Aligned_cols=113 Identities=24% Similarity=0.341 Sum_probs=98.1
Q ss_pred cccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhh--ccccccccccchhhccc
Q psy1056 181 VIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVD--FLENSANMDLKIEKVMT 255 (590)
Q Consensus 181 im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~--~~~~~~~~~~~V~~im~ 255 (590)
+++.|.++ ..++.+|.+.| .++|++.+.++++ +++++||||.+|++ ..........+|+++|+
T Consensus 154 ~~~~~~~~v~~~~~i~~aa~km---------~~~gv~s~v~l~~---~~~~~GIvT~~dl~~~v~~~g~~~~~~V~evmT 221 (610)
T COG2905 154 VKTLPAVTVSPQASIQDAARKM---------KDEGVSSLVVLDD---SGPLLGIVTRKDLRSRVIADGRSKTQKVSEVMT 221 (610)
T ss_pred HhcCCCcccCccCcHHHHHHHH---------HhcCCCeEEEEcC---CCCccceeehHHHHHHHHhcCCCcccchhhhhc
Confidence 44444444 88999999999 9999999999988 79999999999998 22222235789999999
Q ss_pred cCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCC
Q psy1056 256 NVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDY 308 (590)
Q Consensus 256 ~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~ 308 (590)
. |++++.+.+.+.+|+-+|.++++++|||++ +|+++|+||.+||++..+.
T Consensus 222 ~--p~~svd~~~~~feAml~m~r~~I~hl~V~e-~gq~~Gilt~~dIl~l~s~ 271 (610)
T COG2905 222 S--PVISVDRGDFLFEAMLMMLRNRIKHLPVTE-DGQPLGILTLTDILRLFSQ 271 (610)
T ss_pred c--CceeecCcchHHHHHHHHHHhCCceeeeec-CCeeeEEeeHHHHHHhhCC
Confidence 9 999999999999999999999999999996 6999999999999998764
|
|
| >cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.6e-10 Score=99.00 Aligned_cols=100 Identities=22% Similarity=0.344 Sum_probs=84.2
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhc-ccc--ccccccchhhccccCCCeeEEcC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDF-LEN--SANMDLKIEKVMTNVNEIISAQA 265 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~-~~~--~~~~~~~V~~im~~~~~~~tv~~ 265 (590)
++++.++.+.| .+++.+.++|.++ ++++|+++.+|+.. ... ..+...++.++|.. ++.++.+
T Consensus 9 ~~~~~~~~~~~---------~~~~~~~~~v~~~----~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~ 73 (112)
T cd04625 9 ETLLSEAVATM---------AEQDLGSLVVMER----GELVGLLTFREVLQAMAQHGAGVLDTTVRAIMNP--EPIVASP 73 (112)
T ss_pred CCcHHHHHHHH---------HHcCCCeEEEeeC----CEEEEEEEHHHHHHHHHhcCCchhcCCHHHHhCC--CCeEECC
Confidence 67888999888 7777777777764 89999999999972 221 11234689999988 8899999
Q ss_pred CCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 266 GISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 266 ~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
++++.+++++|.+++...+||+| +|+++|++|.+|+++
T Consensus 74 ~~~l~~a~~~m~~~~~~~l~Vv~-~~~~~Gvvt~~dl~~ 111 (112)
T cd04625 74 DDSIDEVRRLMVERHLRYLPVLD-GGTLLGVISFHDVAK 111 (112)
T ss_pred CCCHHHHHHHHHHcCCCeeeEEE-CCEEEEEEEHHHhhc
Confidence 99999999999999999999998 589999999999876
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >PRK15094 magnesium/cobalt efflux protein CorC; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.8e-10 Score=116.58 Aligned_cols=133 Identities=11% Similarity=0.138 Sum_probs=103.7
Q ss_pred hHHHHHHHHHhhhc--CCCcccccc--cccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEec
Q psy1056 162 SIYQIEMIKYIKKE--YPDMQVIGG--NVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTS 234 (590)
Q Consensus 162 ~~~~~~~v~~vk~~--~~~~~im~~--~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~ 234 (590)
.....+++..+.+- ..+.++|+. ++.+ +.++.++++.+ .+++++++||+++. .++++|+++.
T Consensus 51 ~~~e~~~i~~vl~l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i---------~~~~~sr~PV~~~~--~d~iiGiv~~ 119 (292)
T PRK15094 51 DEDTRDMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLDECLDVI---------IESAHSRFPVISED--KDHIEGILMA 119 (292)
T ss_pred CHHHHHHHHHHhccCCCEEeEEccchHHEEEEeCCCCHHHHHHHH---------HhcCCcEEEEecCC--CCcEEEEEEH
Confidence 34555555655430 233568876 3444 89999999999 99999999999861 2789999999
Q ss_pred chhhccccccccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCC
Q psy1056 235 RDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDY 308 (590)
Q Consensus 235 ~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~ 308 (590)
+|+...........++.++|.+ ++++++++++.++++.|.+++.+.+||+|+.|.++|+||..|++..+.-
T Consensus 120 kDll~~~~~~~~~~~l~~l~r~---~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTleDIle~ivG 190 (292)
T PRK15094 120 KDLLPFMRSDAEAFSMDKVLRQ---AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVG 190 (292)
T ss_pred HHHHhHhhccCCcCCHHHHcCC---CcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEHHHHHHHHhC
Confidence 9997322111123458899974 5589999999999999999999999999999999999999999997654
|
|
| >cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.6e-10 Score=98.20 Aligned_cols=101 Identities=26% Similarity=0.483 Sum_probs=87.0
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhc--c-ccccccccchhhccccCCCeeEEcC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDF--L-ENSANMDLKIEKVMTNVNEIISAQA 265 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~--~-~~~~~~~~~V~~im~~~~~~~tv~~ 265 (590)
++++.++.+.| .+.+++.+||+++ ++++|+++..|+.. . ........++.++|.. .+.++.+
T Consensus 9 ~~~~~~~~~~~---------~~~~~~~~~v~~~----~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~ 73 (113)
T cd04622 9 DDTIREAARLM---------REHDVGALPVCEN----DRLVGIVTDRDIVVRAVAEGRDPDTTTVGDVMTR--GVVTVTE 73 (113)
T ss_pred CCcHHHHHHHH---------HHcCCCEEEEeeC----CEEEEEEEhHHHHHHHhhccCCcccCCHHHhccC--CccEECC
Confidence 77899999999 8888999999986 99999999999861 1 1111122349999988 8999999
Q ss_pred CCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 266 GISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 266 ~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
++++.++++.|.+++.+.+||+|++|+++|++|..|+++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 112 (113)
T cd04622 74 DDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR 112 (113)
T ss_pred CCCHHHHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 999999999999999999999998899999999999875
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.2e-10 Score=99.67 Aligned_cols=101 Identities=28% Similarity=0.463 Sum_probs=87.7
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhcccccc------------ccccchhhcccc
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSA------------NMDLKIEKVMTN 256 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~~~------------~~~~~V~~im~~ 256 (590)
++++.++++.| .+.++..+||+++ ++++|+++.+|+....... ....++.++|.+
T Consensus 9 ~~~~~~~~~~~---------~~~~~~~~~V~d~----~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (122)
T cd04585 9 DTSLMEALKLM---------KENSIRRLPVVDR----GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSDIMTR 75 (122)
T ss_pred CCcHHHHHHHH---------HhCCcceeeEecC----CeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHHhccC
Confidence 77899999999 8888899999996 8999999999998332110 013568999998
Q ss_pred CCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 257 VNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 257 ~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
+++++++++++.++++.|.+++.+.+||+|++|+++|+||.+|+++
T Consensus 76 --~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~ 121 (122)
T cd04585 76 --DPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR 121 (122)
T ss_pred --CCeEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence 8999999999999999999999999999998899999999999876
|
Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i |
| >cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.2e-10 Score=102.98 Aligned_cols=101 Identities=25% Similarity=0.486 Sum_probs=86.8
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhcc-c-cccccc-------------------
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFL-E-NSANMD------------------- 247 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~-~-~~~~~~------------------- 247 (590)
++++.++++.| .+.+++++||+++ +++++|+++..|+... . ......
T Consensus 9 ~~~l~~~~~~~---------~~~~~~~~~V~d~---~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (132)
T cd04636 9 DDTLRDVVEIL---------LTGKISGVPVVDN---EGRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKLL 76 (132)
T ss_pred CCcHHHHHHHH---------HHhCCCccceECC---CCCEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHHc
Confidence 77899999999 8888999999998 6899999999999722 1 111111
Q ss_pred -cchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 248 -LKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 248 -~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
.++.++|.+ +++++.+++++.+++++|.+.+.+.+||+|+ |+++|++|..|+++
T Consensus 77 ~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~ 131 (132)
T cd04636 77 GKKVEEIMTK--KVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIR 131 (132)
T ss_pred CCCHHHhccC--CceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhc
Confidence 278999988 8999999999999999999999999999998 99999999999875
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.2e-10 Score=98.35 Aligned_cols=100 Identities=18% Similarity=0.248 Sum_probs=86.6
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhccc--cccccccchhhccccCCCeeEEcCC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLE--NSANMDLKIEKVMTNVNEIISAQAG 266 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~--~~~~~~~~V~~im~~~~~~~tv~~~ 266 (590)
+.+++++++.| .+.+...+||+++ ++++|+++..|+.... .......++.++|.+ ++++++++
T Consensus 9 ~~~~~~~~~~~---------~~~~~~~~~V~d~----~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~--~~~~v~~~ 73 (111)
T cd04589 9 STSIRDAARLM---------REHGADALLVRDG----DPRLGIVTRTDLLDAVLLDGLPSSTPVGEIATF--PLITVDPD 73 (111)
T ss_pred CCcHHHHHHHH---------HHcCCCEEEEecC----CeEEEEEEHHHHHHHHHcCCCCCCCCHHHHhCC--CcEEECCC
Confidence 67899999999 8888889999986 7899999999997321 112235689999988 89999999
Q ss_pred CCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 267 ISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 267 ~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
+++.++++.|.+++.+.+||+|+ |+++|+||..|+++
T Consensus 74 ~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~dl~~ 110 (111)
T cd04589 74 DFLFNALLLMTRHRIHRVVVREG-GEVVGVLEQTDLLS 110 (111)
T ss_pred CcHHHHHHHHHHhCccEEEEeeC-CEEEEEEEhHHhhc
Confidence 99999999999999999999985 89999999999875
|
Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or |
| >cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.2e-10 Score=98.10 Aligned_cols=101 Identities=24% Similarity=0.451 Sum_probs=87.4
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhcccccc-ccccchhhccccCCCeeEEcCCC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSA-NMDLKIEKVMTNVNEIISAQAGI 267 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~~~-~~~~~V~~im~~~~~~~tv~~~~ 267 (590)
++++.++.+.| .+.+++.+||+++ ++++|+++..|+....... ....++.++|.+ +++++.+++
T Consensus 9 ~~~~~~~~~~~---------~~~~~~~~~v~~~----~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~ 73 (111)
T cd04612 9 DLTVDEVLALM---------FGERHRGYPVVDD----GRLVGIVTLADIRRVPAEGREATVLVGDVMTR--DPVTASPDE 73 (111)
T ss_pred CCcHHHHHHHH---------HHcCCCcceEeeC----CeEEEEEEHHHHHHHHhcCcccccCHHHhccC--CCeEECCCC
Confidence 77899999999 8888899999996 8999999999997432221 112368899998 999999999
Q ss_pred CHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 268 SLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 268 ~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
++.++++.|.+++.+.+||+|++|+++|++|..|+++
T Consensus 74 ~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 110 (111)
T cd04612 74 TLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLLR 110 (111)
T ss_pred CHHHHHHHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence 9999999999999999999998899999999999875
|
SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an |
| >PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.7e-10 Score=129.73 Aligned_cols=117 Identities=12% Similarity=0.101 Sum_probs=98.5
Q ss_pred CCcccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhcc--ccccccccchh
Q psy1056 177 PDMQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFL--ENSANMDLKIE 251 (590)
Q Consensus 177 ~~~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~--~~~~~~~~~V~ 251 (590)
+..++|+++..+ ++++.++.+.| .+++.+.+||+|+ +++++|++|.+|+... ........++.
T Consensus 448 ~V~dim~~~~~~v~~~~tl~ea~~~l---------~~~~~~~~~VvD~---~g~lvGiVt~~dL~~~l~~~~~~~~~~v~ 515 (574)
T PRK01862 448 QMRELIQPAQTVVPPTASVADMTRVF---------LEYPVKYLYVVDD---DGRFRGAVALKDITSDLLDKRDTTDKTAA 515 (574)
T ss_pred cHHHHhcCCCceeCCCCCHHHHHHHH---------HhCCCceEEEEcC---CCeEEEEEEHHHHHHHhhcccccccchHH
Confidence 444577766554 77999999999 9999999999998 7899999999998732 22222246799
Q ss_pred hccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCC--CceEEEEeecccccccC
Q psy1056 252 KVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDK--GELIALIARTDLKKSRD 307 (590)
Q Consensus 252 ~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~--g~l~Giit~~dll~~~~ 307 (590)
++|++ +++++++++++.++++.|.+++.+.+||+|++ ++++|+||++|+++...
T Consensus 516 dim~~--~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~ 571 (574)
T PRK01862 516 DYAHT--PFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYR 571 (574)
T ss_pred HhccC--CCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHH
Confidence 99998 99999999999999999999999999999876 58999999999998753
|
|
| >COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.2e-10 Score=117.70 Aligned_cols=131 Identities=24% Similarity=0.223 Sum_probs=90.5
Q ss_pred HHHHHHHHHHc-CCcEEEEecCCCc-hhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCC
Q psy1056 331 DKNRLKLLSQA-GVDVVILDSSQGN-SIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPD 408 (590)
Q Consensus 331 ~~e~~~~li~~-gad~i~V~~~~G~-~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~ 408 (590)
..+..+.+++. ++.++.. +-|. . .+.++.++.. +..++ ..+.+...|+++.++|+|++.+ ...+..|
T Consensus 92 ~~~~~~~ii~~~~vpvv~~--~~g~~~---~~~i~~~~~~--g~~v~-~~v~~~~~A~~~~~~G~d~vI~---~g~eAGG 160 (336)
T COG2070 92 AEAGVDAIIEGAGVPVVST--SFGAPP---AEFVARLKAA--GIKVI-HSVITVREALKAERAGADAVIA---QGAEAGG 160 (336)
T ss_pred hHHhhhhHHhcCCCCEEec--cCCCCc---HHHHHHHHHc--CCeEE-EEeCCHHHHHHHHhCCCCEEEe---cCCcCCC
Confidence 34555666666 7777654 3342 3 3345555553 45554 4899999999999999999933 3322222
Q ss_pred cccc---cc-chhHHHHHHHHHhcCC-CcEEecCCCCCHHHHHHHHHcCCCEEEECccccCCCCCCCceEee
Q psy1056 409 MQVI---GR-NGTAVYRVAEYASRRG-VPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFS 475 (590)
Q Consensus 409 ~~~~---g~-~~~~l~~~~~~~~~~~-v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~~es~~~~~~~ 475 (590)
..|. .. +...+.++++ ..+ +||||+|||.++.++++||+|||++|+||++|..|.||+.+-.++
T Consensus 161 H~g~~~~~~~t~~Lv~ev~~---~~~~iPViAAGGI~dg~~i~AAlalGA~gVq~GT~Fl~t~Ea~a~~~~K 229 (336)
T COG2070 161 HRGGVDLEVSTFALVPEVVD---AVDGIPVIAAGGIADGRGIAAALALGADGVQMGTRFLATKEADASDAYK 229 (336)
T ss_pred cCCCCCCCccHHHHHHHHHH---HhcCCCEEEecCccChHHHHHHHHhccHHHHhhhhhhcccccCCCHHHH
Confidence 2221 22 3333444444 445 999999999999999999999999999999999999999864443
|
|
| >cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.08 E-value=6.3e-09 Score=107.30 Aligned_cols=164 Identities=22% Similarity=0.167 Sum_probs=114.0
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCC-----------CchhhHHHHHHHHHHhCCCceEEecccc----CcHHHHHHHHCCC
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQ-----------GNSIYQIEMIKFIKKEYPDMQVIGGNVL----FGYQPRATLLNFI 393 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~-----------G~~~~~l~~i~~i~~~~~~vpvi~g~v~----s~~~a~~l~~~Gv 393 (590)
++..+.++.+.++|+|.+.++..- ++...+.+.++.+++.. ++|+.+|=-. ..+-++.+.++|+
T Consensus 102 ~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~-~~Pv~vKl~~~~~~~~~~a~~~~~~G~ 180 (296)
T cd04740 102 EEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKAT-DVPVIVKLTPNVTDIVEIARAAEEAGA 180 (296)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhcc-CCCEEEEeCCCchhHHHHHHHHHHcCC
Confidence 455667888888899999997531 12244568888998887 7899987322 2245778889999
Q ss_pred CEEEEcccccc------c-C-------CCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEEC
Q psy1056 394 YQIEMIKFIKK------E-Y-------PDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMG 459 (590)
Q Consensus 394 d~i~v~~~~~~------~-~-------~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g 459 (590)
|+|.+...... . . .++.|....+..+..+.+..+..++|||+.|||.++.|+.++|.+|||+|++|
T Consensus 181 d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~~~~da~~~l~~GAd~V~ig 260 (296)
T cd04740 181 DGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIASGEDALEFLMAGASAVQVG 260 (296)
T ss_pred CEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 99976321110 0 0 00111111112334444444445799999999999999999999999999999
Q ss_pred ccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecccceeEEeeCCchhchHHHHHhh
Q psy1056 460 SLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCG 539 (590)
Q Consensus 460 ~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~~~~~~~~~~~ 539 (590)
+.+.. | -.++..+..+
T Consensus 261 ra~l~--------------------~--------------------------------------------p~~~~~i~~~ 276 (296)
T cd04740 261 TANFV--------------------D--------------------------------------------PEAFKEIIEG 276 (296)
T ss_pred hhhhc--------------------C--------------------------------------------hHHHHHHHHH
Confidence 98831 0 0237788899
Q ss_pred hhhhCcccCcCcHHHHHH
Q psy1056 540 LKHGCQDIGAKSLSNLRA 557 (590)
Q Consensus 540 l~~~m~~~G~~~i~~l~~ 557 (590)
|..-|..-|..+++|++.
T Consensus 277 l~~~~~~~g~~~~~~~~g 294 (296)
T cd04740 277 LEAYLDEEGIKSIEELVG 294 (296)
T ss_pred HHHHHHHcCCCCHHHHhC
Confidence 999999999999999974
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >TIGR00400 mgtE Mg2+ transporter (mgtE) | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.3e-10 Score=122.30 Aligned_cols=128 Identities=16% Similarity=0.238 Sum_probs=105.0
Q ss_pred hHHHHHHHHHhhhcCCC---cccccccccc---hHHHHHHHHHhccccccccccc-----cCceeeEEeeCCCCCCeEEE
Q psy1056 162 SIYQIEMIKYIKKEYPD---MQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGC-----HGFCGFPVTENGKLGEKLLG 230 (590)
Q Consensus 162 ~~~~~~~v~~vk~~~~~---~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~-----~~~~~~pVvd~~~~~~~lvG 230 (590)
.....+.++.+.. ++. .++|+.++.+ +.++.++++.+ .+ +....++|+|+ +++++|
T Consensus 115 ~~~er~~i~~ll~-~~e~tvg~iMt~~~~~v~~~~tv~eal~~l---------~~~~~~~~~~~~v~Vvd~---~~~l~G 181 (449)
T TIGR00400 115 TEEERKAINLLLS-YSDDSAGRIMTIEYVELKEDYTVGKALDYI---------RRVAKTKEDIYTLYVTNE---SKHLKG 181 (449)
T ss_pred CHHHHHHHHHHhC-CCcchHHHhCcCceEEECCCCcHHHHHHHH---------HhcCCCccceeEEEEECC---CCeEEE
Confidence 3444555555554 443 5688877665 88999999998 54 45678888987 699999
Q ss_pred EEecchhhccccccccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCC
Q psy1056 231 IVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDY 308 (590)
Q Consensus 231 ivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~ 308 (590)
+++.+|+.... ...+++++|++ +++++++++++.+|++.|.++++..+||+|++|+++|+||.+|+++....
T Consensus 182 vV~l~dLl~a~----~~~~v~~im~~--~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~~ 253 (449)
T TIGR00400 182 VLSIRDLILAK----PEEILSSIMRS--SVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQS 253 (449)
T ss_pred EEEHHHHhcCC----CCCcHHHHhCC--CCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHHh
Confidence 99999997542 23679999998 89999999999999999999999999999999999999999999987654
|
This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer. |
| >cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.1e-10 Score=96.76 Aligned_cols=95 Identities=17% Similarity=0.214 Sum_probs=84.7
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhccccccccccchhhccccCCCeeEEcCCCC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGIS 268 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~ 268 (590)
+.++.++++.| .+.++..+||+++ ++++|+++..|+.... ..++.++|.+ ++++++++.+
T Consensus 9 ~~~~~~~~~~~---------~~~~~~~~~V~d~----~~~~G~v~~~~l~~~~-----~~~~~~~~~~--~~~~v~~~~~ 68 (104)
T cd04594 9 YDKVYEAKRIM---------IENDLLSLPVVDY----NKFLGAVYLKDIENAT-----YGDVVDYIVR--GIPYVRLTST 68 (104)
T ss_pred CCCHHHHHHHH---------HHcCCcEEEEEEC----CEEEEEEEHHHHhhhc-----ccchhhhhhc--CCcEEcCCCC
Confidence 77899999999 8888999999996 8999999999987321 2457889988 8999999999
Q ss_pred HHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 269 LEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 269 l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
+.++++.|.+++.+.+||+| +|+++|++|..|+++
T Consensus 69 l~~a~~~~~~~~~~~~~Vv~-~~~~iGvit~~dl~~ 103 (104)
T cd04594 69 AEEAWEVMMKNKTRWCPVVD-DGKFKGIVTLDSILD 103 (104)
T ss_pred HHHHHHHHHHcCcceEEEEE-CCEEEEEEEHHHhhc
Confidence 99999999999999999998 699999999999875
|
These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do |
| >cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.4e-10 Score=99.98 Aligned_cols=101 Identities=25% Similarity=0.432 Sum_probs=87.2
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhccccc------------cccccchhhcccc
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENS------------ANMDLKIEKVMTN 256 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~~------------~~~~~~V~~im~~ 256 (590)
++++.++.+.| .+++++++||+++ ++++|+++.+|+...... .....++.++|.+
T Consensus 9 ~~~~~~~~~~~---------~~~~~~~~~V~d~----~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (122)
T cd04637 9 DDRLEEVREIF---------EKHKFHHLLVVED----NELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQIMTR 75 (122)
T ss_pred CCCHHHHHHHH---------HhCCCCEEEEEeC----CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHHhhcC
Confidence 67889999999 8888999999996 899999999999732110 0123578999988
Q ss_pred CCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 257 VNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 257 ~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
+++++.+++++.++++.|.+++...+||+|++|+++|++|..|+++
T Consensus 76 --~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~ 121 (122)
T cd04637 76 --DPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLK 121 (122)
T ss_pred --CCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhh
Confidence 9999999999999999999999999999998899999999999875
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.6e-10 Score=96.44 Aligned_cols=100 Identities=24% Similarity=0.374 Sum_probs=86.2
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhcc--cc-ccccccchhhccccCCCeeEEcC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFL--EN-SANMDLKIEKVMTNVNEIISAQA 265 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~--~~-~~~~~~~V~~im~~~~~~~tv~~ 265 (590)
++++.++++.| .+.+.+.+||+++ ++++|+++..|+... .. ......++.++|.+ +++++.+
T Consensus 9 ~~~~~~~~~~~---------~~~~~~~~~v~~~----~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~ 73 (112)
T cd04802 9 DTTVYEAANIM---------TENNIGRLIVVDN----EKPVGIITERDLVKKVVSRNLKPREVPVGEVMST--PLITIDP 73 (112)
T ss_pred CCCHHHHHHHH---------HHCCCCEEEEEEC----CEEEEEEEHHHHHHHHhhccCCcccCCHHHhcCC--CcEEECC
Confidence 77899999999 8888999999997 599999999999732 11 11234679999988 8999999
Q ss_pred CCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 266 GISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 266 ~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
++++.++++.|.+++.+.+||+|++ +++|+||..|+++
T Consensus 74 ~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~Gvi~~~di~~ 111 (112)
T cd04802 74 NASLNEAAKLMAKHGIKRLPVVDDD-ELVGIVTTTDIVM 111 (112)
T ss_pred CCCHHHHHHHHHHcCCCeeEEeeCC-EEEEEEEhhhhhc
Confidence 9999999999999999999999875 9999999999875
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots [] | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.7e-10 Score=117.45 Aligned_cols=157 Identities=22% Similarity=0.139 Sum_probs=95.5
Q ss_pred hhHHHHHHHHHHhCCCceEEeccccC--cHHHHH-HHHCCCCEEEEccc---ccccC-CCcccccc-chhHHHHHHHHHh
Q psy1056 356 IYQIEMIKFIKKEYPDMQVIGGNVLF--GYQPRA-TLLNFIYQIEMIKF---IKKEY-PDMQVIGR-NGTAVYRVAEYAS 427 (590)
Q Consensus 356 ~~~l~~i~~i~~~~~~vpvi~g~v~s--~~~a~~-l~~~Gvd~i~v~~~---~~~~~-~~~~~~g~-~~~~l~~~~~~~~ 427 (590)
+.+.+.|.++|+..|..||.+|-+.. .++... +.++|+|+|-++-. |+-.. .....||. +...+.++.+.+.
T Consensus 188 edl~~~I~~Lr~~~~~~pVgvKl~~~~~~~~~~~~~~~ag~D~ItIDG~~GGTGAap~~~~d~~GlP~~~~l~~a~~~L~ 267 (368)
T PF01645_consen 188 EDLAQLIEELRELNPGKPVGVKLVAGRGVEDIAAGAAKAGADFITIDGAEGGTGAAPLTSMDHVGLPTEYALARAHQALV 267 (368)
T ss_dssp HHHHHHHHHHHHH-TTSEEEEEEE-STTHHHHHHHHHHTT-SEEEEE-TT---SSEECCHHHHC---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCcEEEEECCCCcHHHHHHhhhhccCCEEEEeCCCCCCCCCchhHHhhCCCcHHHHHHHHHHHHH
Confidence 66789999999998899999887662 333333 77899999977211 11100 01345788 7778888887775
Q ss_pred cC----CCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCCC-----------CCCCceEeecCeeeeeeeccccHHHH
Q psy1056 428 RR----GVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTS-----------EAPGEYFFSDGVRLKKYRGMGSLEAM 492 (590)
Q Consensus 428 ~~----~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~~-----------es~~~~~~~~g~~~k~~~g~~s~~a~ 492 (590)
+. .+.+|++||++|+.|++||++||||+|.+|+.++-+. +||..+.+++++..|.
T Consensus 268 ~~glr~~V~Li~sGgl~t~~dv~kalaLGAD~v~igt~~liAlGC~~~~~C~~~~CP~Giatq~~~l~~~---------- 337 (368)
T PF01645_consen 268 KNGLRDRVSLIASGGLRTGDDVAKALALGADAVYIGTAALIALGCIQCRKCHTGTCPVGIATQDPKLRKR---------- 337 (368)
T ss_dssp CTT-CCCSEEEEESS--SHHHHHHHHHCT-SEEE-SHHHHHHCT--S---CCCT--TTSSS---CCHH------------
T ss_pred HcCCCCceEEEEeCCccCHHHHHHHHhcCCCeeEecchhhhhcchHHHhcccCCCCCceeeecCcccccc----------
Confidence 44 3899999999999999999999999999997764332 4444443333322110
Q ss_pred hcccCCCcccchhhhccccceeecccceeEEeeCCchhchHHHHHhhhhhhCcccCc
Q psy1056 493 SRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGA 549 (590)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~~~~~~~~~~~l~~~m~~~G~ 549 (590)
..+.++. ..|.+++..+..+++..|.-+|-
T Consensus 338 --------------------l~~~~~~-------~~v~n~~~~~~~el~~~~~a~G~ 367 (368)
T PF01645_consen 338 --------------------LDVEEKA-------ERVANFLKACAEELREILAALGK 367 (368)
T ss_dssp --------------------CT----H-------HHHHHHHHHHHHHHHHHHHHHT-
T ss_pred --------------------cccccHH-------HHHHHHHHHHHHHHHHHHHHhCC
Confidence 0111111 14788899999999988887774
|
This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A. |
| >TIGR00393 kpsF KpsF/GutQ family protein | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.2e-10 Score=113.56 Aligned_cols=105 Identities=16% Similarity=0.202 Sum_probs=90.0
Q ss_pred cccccc-ccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhcc-ccccccccchhhcc
Q psy1056 180 QVIGGN-VVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFL-ENSANMDLKIEKVM 254 (590)
Q Consensus 180 ~im~~~-~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~-~~~~~~~~~V~~im 254 (590)
++|..+ +.+ ++++.++++.| .+.+++.+||+|+ +++++|+++.+|+... ........+++++|
T Consensus 159 ~im~~~~~~~v~~~~~v~~a~~~~---------~~~~~~~~~Vvd~---~g~~~Givt~~dl~~~~~~~~~~~~~v~~im 226 (268)
T TIGR00393 159 DLMQTTDLPLIAPTTSFKDALLEM---------SEKRLGSAIVCDE---NNQLVGVFTDGDLRRALLGGGSLKSEVRDFM 226 (268)
T ss_pred HHhCCCCCCcCCCCCcHHHHHHHH---------hhcCCcEEEEEeC---CCCEEEEEEcHHHHHHHhcCCcccCcHHHhC
Confidence 377665 444 78999999999 8889999999997 6999999999999732 11122457899999
Q ss_pred ccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEe
Q psy1056 255 TNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIA 298 (590)
Q Consensus 255 ~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit 298 (590)
.+ +++++++++++.+|+++|.+++...+||+|++|+++|+|+
T Consensus 227 ~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~ 268 (268)
T TIGR00393 227 TL--GPKTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH 268 (268)
T ss_pred CC--CCeEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence 98 8999999999999999999999999999999999999985
|
This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli. |
| >cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD | Back alignment and domain information |
|---|
Probab=99.05 E-value=8.3e-09 Score=109.05 Aligned_cols=103 Identities=17% Similarity=0.086 Sum_probs=73.0
Q ss_pred HHHHHHHHhCCCceEEeccccCcHHHHHHHHCCC-CEEEEcccccccCCCccccccchhHHHHHHHHHhcC--------C
Q psy1056 360 EMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFI-YQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRR--------G 430 (590)
Q Consensus 360 ~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gv-d~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~--------~ 430 (590)
+.++.+++. ++.|.++|+.+.++|+ |.|.+.. +..|.+|...+...+..+.+..... .
T Consensus 153 ~~v~~L~~~---------G~it~~eA~~A~~~g~aD~Ivvq~----EAGGH~g~~~~~~Llp~v~~l~d~v~~~~~~~~~ 219 (418)
T cd04742 153 RILKKLLAE---------GKITEEQAELARRVPVADDITVEA----DSGGHTDNRPLSVLLPTIIRLRDELAARYGYRRP 219 (418)
T ss_pred HHHHHHHHc---------CCCCHHHHHHHHhCCCCCEEEEcc----cCCCCCCCccHHhHHHHHHHHHHHHhhccccCCC
Confidence 455666555 2339999999999995 8885532 1122222221334444454433221 4
Q ss_pred CcEEecCCCCCHHHHHHHHHcCCCEEEECccccCCCCCCCceEee
Q psy1056 431 VPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFS 475 (590)
Q Consensus 431 v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~~es~~~~~~~ 475 (590)
+||||.|||.||.+++.||+|||++|++|+.|..|.||+.+-.++
T Consensus 220 ipViAAGGI~tg~~vaAA~alGAd~V~~GT~flat~Ea~~s~~~K 264 (418)
T cd04742 220 IRVGAAGGIGTPEAAAAAFALGADFIVTGSINQCTVEAGTSDAVK 264 (418)
T ss_pred ceEEEECCCCCHHHHHHHHHcCCcEEeeccHHHhCccccCCHHHH
Confidence 999999999999999999999999999999999999999775443
|
NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.8e-10 Score=96.21 Aligned_cols=99 Identities=21% Similarity=0.409 Sum_probs=83.4
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhcc--ccccccccchhhccccCCCeeEEcCC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFL--ENSANMDLKIEKVMTNVNEIISAQAG 266 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~--~~~~~~~~~V~~im~~~~~~~tv~~~ 266 (590)
++++.++.+.| .+++++.+||+++ ++++|++|..|+... ........++.++|.+ ++++++++
T Consensus 9 ~~~~~~~~~~~---------~~~~~~~~~V~~~----~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~ 73 (110)
T cd04609 9 DDTVSQAIERM---------REYGVSQLPVVDD----GRVVGSIDESDLLDALIEGKAKFSLPVREVMGE--PLPTVDPD 73 (110)
T ss_pred CCcHHHHHHHH---------HHcCCceeeEeeC----CeeEEEEeHHHHHHHHhccccccCcCHHHHhcC--CCceeCCC
Confidence 67889999999 8889999999996 899999999998833 2211124679999988 89999999
Q ss_pred CCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 267 ISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 267 ~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
+++.++.++|.+ . ..+||++++|+++|++|++|+++
T Consensus 74 ~~l~~~~~~~~~-~-~~~~vv~~~~~~~Gvvt~~di~~ 109 (110)
T cd04609 74 APIEELSELLDR-G-NVAVVVDEGGKFVGIITRADLLK 109 (110)
T ss_pred CcHHHHHHHHHh-C-CceeEEecCCeEEEEEeHHHhhc
Confidence 999999999988 3 34899998999999999999875
|
The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote |
| >cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.04 E-value=6.8e-10 Score=97.78 Aligned_cols=100 Identities=26% Similarity=0.466 Sum_probs=86.6
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhcccc--c----------cccccchhhcccc
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLEN--S----------ANMDLKIEKVMTN 256 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~--~----------~~~~~~V~~im~~ 256 (590)
++++.++.+.| .+++++.+||+++ ++++|++|..|+..... . .....++.++|.+
T Consensus 9 ~~~~~~~~~~l---------~~~~~~~i~V~~~----~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (121)
T cd04633 9 DDRVSHARRLM---------LDHDISRLPVIEG----GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDIMTR 75 (121)
T ss_pred CCcHHHHHHHH---------HHcCCCeeEEEEC----CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHHHccC
Confidence 77899999998 8888999999996 89999999999973211 0 1124578999988
Q ss_pred CCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 257 VNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 257 ~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
+++++++++++.+++++|.+.+.+.+||+|+ |+++|++|..|+++
T Consensus 76 --~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~ 120 (121)
T cd04633 76 --PVITIEPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILR 120 (121)
T ss_pred --CceEECCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhc
Confidence 8999999999999999999999999999998 99999999999875
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >TIGR02814 pfaD_fam PfaD family protein | Back alignment and domain information |
|---|
Probab=99.04 E-value=6.5e-09 Score=110.52 Aligned_cols=92 Identities=15% Similarity=0.035 Sum_probs=66.7
Q ss_pred cCcHHHHHHHHCCC-CEEEEcccccccCCCccccccchhHHHHHHHHHhc--------CCCcEEecCCCCCHHHHHHHHH
Q psy1056 380 LFGYQPRATLLNFI-YQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASR--------RGVPVIADGGVQSVGHVMKALA 450 (590)
Q Consensus 380 ~s~~~a~~l~~~Gv-d~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~--------~~v~iia~GGi~~~~di~kala 450 (590)
.|.++|+.+.+.|+ |.|.+.. +..|.+|...+...+.++.+.... ..+||||.|||.||.+++.||+
T Consensus 169 it~eEA~~a~~~g~aD~Ivve~----EAGGHtg~~~~~~Llp~i~~lrd~v~~~~~y~~~VpViAAGGI~t~~~vaAAla 244 (444)
T TIGR02814 169 ITREEAELARRVPVADDICVEA----DSGGHTDNRPLVVLLPAIIRLRDTLMRRYGYRKPIRVGAAGGIGTPEAAAAAFM 244 (444)
T ss_pred CCHHHHHHHHhCCCCcEEEEec----cCCCCCCCCcHHHHHHHHHHHHHHHhhcccCCCCceEEEeCCCCCHHHHHHHHH
Confidence 39999999999995 8884432 112222211144445555432211 1589999999999999999999
Q ss_pred cCCCEEEECccccCCCCCCCceEee
Q psy1056 451 LGASTAMMGSLLAGTSEAPGEYFFS 475 (590)
Q Consensus 451 lGA~~v~~g~~l~~~~es~~~~~~~ 475 (590)
||||+|++|+.|..|.||+.+-.++
T Consensus 245 LGAdgV~~GT~flat~Esgas~~~K 269 (444)
T TIGR02814 245 LGADFIVTGSVNQCTVEAGTSDNVK 269 (444)
T ss_pred cCCcEEEeccHHHhCccccCCHHHH
Confidence 9999999999999999998775443
|
The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se. |
| >TIGR01182 eda Entner-Doudoroff aldolase | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.9e-09 Score=100.23 Aligned_cols=107 Identities=25% Similarity=0.318 Sum_probs=92.7
Q ss_pred chhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCC
Q psy1056 328 READKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYP 407 (590)
Q Consensus 328 ~~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~ 407 (590)
.++..+.++.+.+.|++.+.|+... ...++.++.+++++|++.+.+|+|.+.+++++++++|+++| ||++..
T Consensus 19 ~e~a~~~~~al~~~Gi~~iEit~~t---~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~Fi-vsP~~~---- 90 (204)
T TIGR01182 19 VDDALPLAKALIEGGLRVLEVTLRT---PVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFI-VSPGLT---- 90 (204)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCC---ccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEE-ECCCCC----
Confidence 3456788999999999999998754 34588899999999999999999999999999999999999 555443
Q ss_pred CccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEE
Q psy1056 408 DMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTA 456 (590)
Q Consensus 408 ~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v 456 (590)
.++.+.|.+.++|.+. |+.||.|+.+|+.+||+.|
T Consensus 91 ------------~~v~~~~~~~~i~~iP--G~~TptEi~~A~~~Ga~~v 125 (204)
T TIGR01182 91 ------------PELAKHAQDHGIPIIP--GVATPSEIMLALELGITAL 125 (204)
T ss_pred ------------HHHHHHHHHcCCcEEC--CCCCHHHHHHHHHCCCCEE
Confidence 2467777788999999 9999999999999999999
|
2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida |
| >cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria | Back alignment and domain information |
|---|
Probab=99.01 E-value=7.2e-10 Score=97.55 Aligned_cols=101 Identities=27% Similarity=0.487 Sum_probs=87.3
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhcccc-----c------cccccchhhccccC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLEN-----S------ANMDLKIEKVMTNV 257 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~-----~------~~~~~~V~~im~~~ 257 (590)
++++.++.+.| .+.+++.+||+++ +++++|+++..|+..... . .....++.++|.+
T Consensus 9 ~~~l~~a~~~~---------~~~~~~~~~V~d~---~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~- 75 (121)
T cd04584 9 TTTIAEALELM---------REHKIRHLPVVDE---EGRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEIMTK- 75 (121)
T ss_pred CCCHHHHHHHH---------HHcCCCcccEECC---CCcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHHHhhC-
Confidence 67889999998 8888899999998 699999999999873211 0 1234679999998
Q ss_pred CCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 258 NEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 258 ~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
+++++.+++++.++++.|.+++...+||+|+ |+++|++|.+|+++
T Consensus 76 -~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~ 120 (121)
T cd04584 76 -DVITVHPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLR 120 (121)
T ss_pred -CCeEECCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence 8999999999999999999999999999987 99999999999876
|
Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in |
| >KOG1764|consensus | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.3e-09 Score=115.17 Aligned_cols=192 Identities=19% Similarity=0.254 Sum_probs=135.1
Q ss_pred cccCC-EEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccccccccCCCCCCCCccCCcccccccccccCC
Q psy1056 25 FIRDP-VCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKDLSSPLTKKITLAA 103 (590)
Q Consensus 25 m~~~~-vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Did~l~~~~~~~~~~~~~~~~~l~~~~~~~~ 103 (590)
-.+++ +.+.|..++.++...+.+++++++||.|.+ +++++.++|.+ +++-- +.... ...
T Consensus 159 ~~~~~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~--~~~v~~ilt~~--rIl~~---------------l~~~~-~~~ 218 (381)
T KOG1764|consen 159 TLKPPFVSISPESSLLDAVLLLIKSRIHRVPVIDPE--TGEVLYILTQR--RILKF---------------LWLNG-RLL 218 (381)
T ss_pred ccCCCceeecCcHHHHHHHHHHHhCCccceeeeccc--ccceeeehhHH--HHHHH---------------HHHhh-ccc
Confidence 45566 899999999999999999999999999944 47999999999 55420 00000 000
Q ss_pred ceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHHcCCcEEEEcCCCCchHHHHHHHHHhhhcCCCccccc
Q psy1056 104 PLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIG 183 (590)
Q Consensus 104 piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~im~ 183 (590)
|. ...+...+... ++| .+.
T Consensus 219 ~~---------~~~l~~s~~dl-~ig---------------------------------------------------~~~ 237 (381)
T KOG1764|consen 219 PL---------PSLLSKSLSDL-GIG---------------------------------------------------TWS 237 (381)
T ss_pred cc---------HHHhhCCHHHh-Ccc---------------------------------------------------hhh
Confidence 00 00000000000 000 011
Q ss_pred ccccc--hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhccccc---cccccc-hh----hc
Q psy1056 184 GNVVT--TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENS---ANMDLK-IE----KV 253 (590)
Q Consensus 184 ~~~~~--~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~~---~~~~~~-V~----~i 253 (590)
.-..+ ++++.+|++.| .+++++.+||++. +++.+|+++..|+...... ...... +. ..
T Consensus 238 ~i~~i~~~~~v~~al~~m---------~~~~is~lpvV~~---~g~~v~~~s~~Dv~~l~~~~~~~~~~~~~l~~~~~~~ 305 (381)
T KOG1764|consen 238 NIASISEDTPVIEALKIM---------SERRISALPVVDE---NGKKVGNYSRFDVIHLAREGTYNNLDLSCLSEALSHR 305 (381)
T ss_pred hheeecCCCcHHHHHHHH---------HhcCcCcceEEcC---CCceecceehhhhhhhhhcCccCccchhHHHHHhhhc
Confidence 01111 77899999999 9999999999998 6888999999999844221 111122 22 23
Q ss_pred cccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCCC
Q psy1056 254 MTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYP 309 (590)
Q Consensus 254 m~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~~ 309 (590)
+..+..++++.++.++.++++.|..++++++.|||++|.++|+||..|++......
T Consensus 306 ~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~l~~~ 361 (381)
T KOG1764|consen 306 PIRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSYLVLT 361 (381)
T ss_pred ccccCccEEEeecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHHHHHhC
Confidence 33355789999999999999999999999999999999999999999999987643
|
|
| >TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.4e-08 Score=104.91 Aligned_cols=164 Identities=20% Similarity=0.168 Sum_probs=113.2
Q ss_pred hhHHHHHHHHHHc--CCcEEEEecC--C---------CchhhHHHHHHHHHHhCCCceEEeccccC----cHHHHHHHHC
Q psy1056 329 EADKNRLKLLSQA--GVDVVILDSS--Q---------GNSIYQIEMIKFIKKEYPDMQVIGGNVLF----GYQPRATLLN 391 (590)
Q Consensus 329 ~~~~e~~~~li~~--gad~i~V~~~--~---------G~~~~~l~~i~~i~~~~~~vpvi~g~v~s----~~~a~~l~~~ 391 (590)
++..+.++.+.++ +++.+.++.+ + ++.+...+.++.+++.. ++|+.+|--.+ .+-++.+.++
T Consensus 103 ~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~-~~pv~vKi~~~~~~~~~~a~~l~~~ 181 (300)
T TIGR01037 103 EEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKT-DVPVFAKLSPNVTDITEIAKAAEEA 181 (300)
T ss_pred HHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc-CCCEEEECCCChhhHHHHHHHHHHc
Confidence 3455566776665 3899999863 1 23355678899999887 78999875433 3457788899
Q ss_pred CCCEEEEccccc-cc---CCC---c-cc-cccc-----hhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEE
Q psy1056 392 FIYQIEMIKFIK-KE---YPD---M-QV-IGRN-----GTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAM 457 (590)
Q Consensus 392 Gvd~i~v~~~~~-~~---~~~---~-~~-~g~~-----~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~ 457 (590)
|+|+|.|+.... +. ..+ . .. .|++ +..+..+.+..+..++|||+.|||+++.|+.+++..|||+||
T Consensus 182 G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~ipvi~~GGI~s~~da~~~l~~GAd~V~ 261 (300)
T TIGR01037 182 GADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMVDIPIIGVGGITSFEDALEFLMAGASAVQ 261 (300)
T ss_pred CCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHcCCCcee
Confidence 999997732211 00 000 0 00 0221 112333444444457999999999999999999999999999
Q ss_pred ECccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecccceeEEeeCCchhchHHHHH
Q psy1056 458 MGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQ 537 (590)
Q Consensus 458 ~g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~~~~~~~~~ 537 (590)
+|+.+..- + .++..+.
T Consensus 262 igr~~l~~-------------------------------------------------------------p---~~~~~i~ 277 (300)
T TIGR01037 262 VGTAVYYR-------------------------------------------------------------G---FAFKKII 277 (300)
T ss_pred ecHHHhcC-------------------------------------------------------------c---hHHHHHH
Confidence 99987310 0 3477899
Q ss_pred hhhhhhCcccCcCcHHHHHH
Q psy1056 538 CGLKHGCQDIGAKSLSNLRA 557 (590)
Q Consensus 538 ~~l~~~m~~~G~~~i~~l~~ 557 (590)
.+|+..|.--|.++++|++.
T Consensus 278 ~~l~~~~~~~g~~~~~e~~g 297 (300)
T TIGR01037 278 EGLIAFLKAEGFTSIEELIG 297 (300)
T ss_pred HHHHHHHHHcCCCCHHHHhC
Confidence 99999999999999999975
|
This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase. |
| >PLN02826 dihydroorotate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.2e-08 Score=108.48 Aligned_cols=174 Identities=17% Similarity=0.148 Sum_probs=111.4
Q ss_pred EEeEeeccc-------hhHHHHHHHHHHcCCcEEEEecCCCc---------hhhHHHHHHHHHHh--------CCCceEE
Q psy1056 320 IVGAAIGTR-------EADKNRLKLLSQAGVDVVILDSSQGN---------SIYQIEMIKFIKKE--------YPDMQVI 375 (590)
Q Consensus 320 ~v~a~i~~~-------~~~~e~~~~li~~gad~i~V~~~~G~---------~~~~l~~i~~i~~~--------~~~vpvi 375 (590)
.++.+++.. +++.+.++.+. ..+|++.++.+-.+ ...+.+.++.+++. ...+|++
T Consensus 188 ~lgvnIg~nk~~~~~~~Dy~~~~~~~~-~~aDylelNiScPNtpglr~lq~~~~l~~ll~~V~~~~~~~~~~~~~~~Pv~ 266 (409)
T PLN02826 188 ILGVNLGKNKTSEDAAADYVQGVRALS-QYADYLVINVSSPNTPGLRKLQGRKQLKDLLKKVLAARDEMQWGEEGPPPLL 266 (409)
T ss_pred eEEEEeccCCCCcccHHHHHHHHHHHh-hhCCEEEEECCCCCCCCcccccChHHHHHHHHHHHHHHHHhhhccccCCceE
Confidence 467777644 23334444443 35999999864321 12234555555422 1258999
Q ss_pred ecccc--CcHH----HHHHHHCCCCEEEEccccc-c-------c----CCCccccccchhHHHHHHHHHhcC--CCcEEe
Q psy1056 376 GGNVL--FGYQ----PRATLLNFIYQIEMIKFIK-K-------E----YPDMQVIGRNGTAVYRVAEYASRR--GVPVIA 435 (590)
Q Consensus 376 ~g~v~--s~~~----a~~l~~~Gvd~i~v~~~~~-~-------~----~~~~~~~g~~~~~l~~~~~~~~~~--~v~iia 435 (590)
+|=-. +.++ |+.+.++|+|+|.+++.+. + . ..|+.|-.+...++..+.+..+.. ++|||+
T Consensus 267 vKlaPdl~~~di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~~ipIIg 346 (409)
T PLN02826 267 VKIAPDLSKEDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRGKIPLVG 346 (409)
T ss_pred EecCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhCCCCcEEE
Confidence 88633 4445 7778899999997743221 1 0 011222222222333333333332 599999
Q ss_pred cCCCCCHHHHHHHHHcCCCEEEECccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceee
Q psy1056 436 DGGVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKV 515 (590)
Q Consensus 436 ~GGi~~~~di~kalalGA~~v~~g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~ 515 (590)
+|||.|+.|+.+.+.+||++|++++.|. |.|
T Consensus 347 vGGI~sg~Da~e~i~AGAs~VQv~Ta~~-------------------~~G------------------------------ 377 (409)
T PLN02826 347 CGGVSSGEDAYKKIRAGASLVQLYTAFA-------------------YEG------------------------------ 377 (409)
T ss_pred ECCCCCHHHHHHHHHhCCCeeeecHHHH-------------------hcC------------------------------
Confidence 9999999999999999999999999872 112
Q ss_pred cccceeEEeeCCchhchHHHHHhhhhhhCcccCcCcHHHHHH
Q psy1056 516 AQGVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRA 557 (590)
Q Consensus 516 ~eg~~~~~~~~~~~~~~~~~~~~~l~~~m~~~G~~~i~~l~~ 557 (590)
-.++..+..+|+..|..-|.++++|++.
T Consensus 378 --------------p~~i~~I~~eL~~~l~~~G~~si~e~iG 405 (409)
T PLN02826 378 --------------PALIPRIKAELAACLERDGFKSIQEAVG 405 (409)
T ss_pred --------------HHHHHHHHHHHHHHHHHcCCCCHHHHhC
Confidence 0247788899999999999999999975
|
|
| >COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription] | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.7e-10 Score=100.20 Aligned_cols=49 Identities=24% Similarity=0.487 Sum_probs=45.9
Q ss_pred ccCccccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 21 YKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 21 ~~~~m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
++.+|++++++|+|++++.+|+++|.+++++.+||++++ +++|-+|++|
T Consensus 67 a~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~~----k~VGsItE~~ 115 (187)
T COG3620 67 AKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEED----KVVGSITEND 115 (187)
T ss_pred HhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeCC----eeeeeecHHH
Confidence 445799999999999999999999999999999999986 9999999995
|
|
| >TIGR03520 GldE gliding motility-associated protein GldE | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.3e-09 Score=116.81 Aligned_cols=130 Identities=12% Similarity=0.140 Sum_probs=104.9
Q ss_pred hHHHHHHHHHhhhc--CCCcccccc--cccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEec
Q psy1056 162 SIYQIEMIKYIKKE--YPDMQVIGG--NVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTS 234 (590)
Q Consensus 162 ~~~~~~~v~~vk~~--~~~~~im~~--~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~ 234 (590)
.....++++.+.+- ..+.++|+. ++.+ +++++++.+.+ .+++++++||.+++ .++++||++.
T Consensus 175 ~~~E~~~i~~vl~l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~---------~~~~~sR~PV~~~~--~d~ivGiv~~ 243 (408)
T TIGR03520 175 TKEEQKILQGIVSFGNTDTKQVMRPRLDIFALDIETSFSEIIPKI---------IENGYSRIPVYKET--IDNITGVLYI 243 (408)
T ss_pred ChHHHHHHHHHhccCCCEeeeeCCchHhEEEEECCCCHHHHHHHH---------HhCCCCEEEEEcCC--CCceEEEEEH
Confidence 34556666666541 244568875 4444 88999999999 99999999999862 3689999999
Q ss_pred chhhccccccccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccC
Q psy1056 235 RDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRD 307 (590)
Q Consensus 235 ~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~ 307 (590)
+|+...... ...++.++|+ ++.++++++++.++++.|.+++.+..+|+|+.|.++|+||..|+++...
T Consensus 244 kDll~~~~~--~~~~l~~~~~---~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~eDileeiv 311 (408)
T TIGR03520 244 KDLLPHLNK--KNFDWQSLLR---EPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEEIV 311 (408)
T ss_pred HHHHhHhcc--CCCCHHHHcC---CCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEHHHHHHHHh
Confidence 999732221 1346889987 6789999999999999999999999999999999999999999999874
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype. |
| >PRK07259 dihydroorotate dehydrogenase 1B; Reviewed | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.1e-08 Score=103.60 Aligned_cols=165 Identities=20% Similarity=0.184 Sum_probs=114.8
Q ss_pred hhHHHHHHHHHHcC-CcEEEEec-----CC-C-----chhhHHHHHHHHHHhCCCceEEeccccCc----HHHHHHHHCC
Q psy1056 329 EADKNRLKLLSQAG-VDVVILDS-----SQ-G-----NSIYQIEMIKFIKKEYPDMQVIGGNVLFG----YQPRATLLNF 392 (590)
Q Consensus 329 ~~~~e~~~~li~~g-ad~i~V~~-----~~-G-----~~~~~l~~i~~i~~~~~~vpvi~g~v~s~----~~a~~l~~~G 392 (590)
++..+.++.+.++| +|.+.++. .+ | +.+...+.++.+++.. +.|+.+|=-.+. +-++.|.++|
T Consensus 104 ~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~~~~~~~~~a~~l~~~G 182 (301)
T PRK07259 104 EEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVV-KVPVIVKLTPNVTDIVEIAKAAEEAG 182 (301)
T ss_pred HHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc-CCCEEEEcCCCchhHHHHHHHHHHcC
Confidence 45566778888888 99999965 22 1 1245678899999887 789998754433 4477888999
Q ss_pred CCEEEEcccccc------c-C-------CCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEE
Q psy1056 393 IYQIEMIKFIKK------E-Y-------PDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMM 458 (590)
Q Consensus 393 vd~i~v~~~~~~------~-~-------~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~ 458 (590)
+|+|.+...+.. . . .++.+....+..+..+.+..+..++|||+.|||.++.|+.++++.|||+|++
T Consensus 183 ~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~GGI~~~~da~~~l~aGAd~V~i 262 (301)
T PRK07259 183 ADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMGGISSAEDAIEFIMAGASAVQV 262 (301)
T ss_pred CCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCceeE
Confidence 999976221100 0 0 0011111112234444444444579999999999999999999999999999
Q ss_pred CccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecccceeEEeeCCchhchHHHHHh
Q psy1056 459 GSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQC 538 (590)
Q Consensus 459 g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~~~~~~~~~~ 538 (590)
|+.+.. | -.++..+..
T Consensus 263 gr~ll~--------------------~--------------------------------------------P~~~~~i~~ 278 (301)
T PRK07259 263 GTANFY--------------------D--------------------------------------------PYAFPKIIE 278 (301)
T ss_pred cHHHhc--------------------C--------------------------------------------cHHHHHHHH
Confidence 998831 0 024778888
Q ss_pred hhhhhCcccCcCcHHHHHHh
Q psy1056 539 GLKHGCQDIGAKSLSNLRAM 558 (590)
Q Consensus 539 ~l~~~m~~~G~~~i~~l~~~ 558 (590)
+|+..|.--|..++.|++..
T Consensus 279 ~l~~~~~~~g~~~i~~~~g~ 298 (301)
T PRK07259 279 GLEAYLDKYGIKSIEEIVGI 298 (301)
T ss_pred HHHHHHHHcCCCCHHHHhCc
Confidence 99999999999999998753
|
|
| >cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.5e-09 Score=91.78 Aligned_cols=102 Identities=27% Similarity=0.506 Sum_probs=86.7
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhccc-c-ccccccchhhccccCCCeeEEcCC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLE-N-SANMDLKIEKVMTNVNEIISAQAG 266 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~-~-~~~~~~~V~~im~~~~~~~tv~~~ 266 (590)
++++.++.+.| .+++...+||+++ +++++|+++.+|+.... . .......+.++|.. ++.+++++
T Consensus 9 ~~~~~~~~~~~---------~~~~~~~~~v~~~---~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 74 (113)
T cd02205 9 DDTVAEALRLM---------LEHGISGLPVVDD---DGRLVGIVTERDLLRALAEGGLDPLVTVGDVMTR--DVVTVSPD 74 (113)
T ss_pred CCCHHHHHHHH---------HhcCCceEEEECC---CCCEEEEEeHHHHHHHHHhccCCccccHHHHhcC--CceecCCC
Confidence 67889999998 8888899999998 68999999999998322 1 11111227788988 89999999
Q ss_pred CCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 267 ISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 267 ~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
+++.++++.|.+.+.+.+||+|++|+++|+++..|+++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 112 (113)
T cd02205 75 TSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILR 112 (113)
T ss_pred cCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence 99999999999999999999999999999999999875
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali |
| >cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.5e-09 Score=93.74 Aligned_cols=95 Identities=20% Similarity=0.325 Sum_probs=80.6
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhccccccccccchhhccccCCCeeEEcCCCC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGIS 268 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~ 268 (590)
++++.++.+.+ .++++..+||++++..+++++|+++.+|+..... ++|.+ ++.+++++++
T Consensus 10 ~~~~~~~~~~~---------~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~---------~~m~~--~~~~v~~~~~ 69 (105)
T cd04591 10 GMTVEDLESLL---------STTSHNGFPVVDSTEESPRLVGYILRSQLVVALK---------NYIDP--SPFTVSPRTS 69 (105)
T ss_pred cccHHHHHHHH---------HhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHH---------HhccC--CCceECCCCc
Confidence 67888888888 8888889999986111278999999999863321 18887 8999999999
Q ss_pred HHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 269 LEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 269 l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
+.++++.|.+++.+.+||++ +|+++|+||++|+++
T Consensus 70 l~~~~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~~ 104 (105)
T cd04591 70 LEKVHQLFRKLGLRHLLVVD-EGRLVGIITRKDLLK 104 (105)
T ss_pred HHHHHHHHHHcCCCEEEEEE-CCeEEEEEEhhhhhc
Confidence 99999999999999999994 789999999999876
|
These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS |
| >cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.1e-09 Score=91.68 Aligned_cols=43 Identities=16% Similarity=0.322 Sum_probs=39.3
Q ss_pred CCEEECCCCCHHHHHHHHHHcCccceeeccC-CcccceeEEEEeccc
Q psy1056 28 DPVCIAPSTTLGKVLQMKKQHGFCGFPVTEN-GKLGEKLLGIVTSRD 73 (590)
Q Consensus 28 ~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~-~~~~~~lvGivT~~D 73 (590)
.++++++++|+.+|+++|.+++++++||+|+ + |+++|++|.+|
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~---~~~~Givt~~D 45 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRK---QQFVGMLTITD 45 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCC---CEEEEEEEHHH
Confidence 4679999999999999999999999999985 4 69999999993
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.9e-09 Score=91.52 Aligned_cols=97 Identities=18% Similarity=0.377 Sum_probs=84.5
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhccccccccccchhhccccCCCeeEEcCCCC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGIS 268 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~ 268 (590)
+.++.++++.| .+.+++.+||+++ +++++|+++.+|+..... ..++.++|.. ++.++.++++
T Consensus 9 ~~~~~~~~~~~---------~~~~~~~~~v~~~---~~~~~g~v~~~~l~~~~~----~~~~~~~~~~--~~~~v~~~~~ 70 (106)
T cd04638 9 PGTRDDVLELL---------KEYKVSGVPVVKK---SGELVGIITRKDLLRNPE----EEQLALLMTR--DPPTVSPDDD 70 (106)
T ss_pred CCCHHHHHHHH---------HHcCCCeEEEEcC---CCcEEEEEEHHHHHhccc----cchHHHHhcC--CCceECCCCC
Confidence 56888888888 7788889999998 689999999999874321 2468889988 8999999999
Q ss_pred HHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 269 LEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 269 l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
+.++++.|.+++.+.+||+|+ |+++|++|..|+++
T Consensus 71 l~~~~~~~~~~~~~~~~Vvd~-~~~~G~it~~d~~~ 105 (106)
T cd04638 71 VKEAAKLMVENNIRRVPVVDD-GKLVGIVTVADIVR 105 (106)
T ss_pred HHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 999999999999999999985 79999999999875
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.9e-08 Score=96.48 Aligned_cols=107 Identities=16% Similarity=0.125 Sum_probs=92.1
Q ss_pred chhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCC
Q psy1056 328 READKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYP 407 (590)
Q Consensus 328 ~~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~ 407 (590)
.++..+.++.+.+.|+..+.|..... ..++.|+.+++++|++.+.+|+|.+.+++++++++|+++| ||++..
T Consensus 15 ~~~a~~ia~al~~gGi~~iEit~~tp---~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~Fi-vSP~~~---- 86 (201)
T PRK06015 15 VEHAVPLARALAAGGLPAIEITLRTP---AALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFI-VSPGTT---- 86 (201)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCCc---cHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEE-ECCCCC----
Confidence 34566789999999999999987643 3578899999999988899999999999999999999999 555443
Q ss_pred CccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEE
Q psy1056 408 DMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTA 456 (590)
Q Consensus 408 ~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v 456 (590)
.++.+.+.+.++|.+. |+.||.|+..|+.+||+.|
T Consensus 87 ------------~~vi~~a~~~~i~~iP--G~~TptEi~~A~~~Ga~~v 121 (201)
T PRK06015 87 ------------QELLAAANDSDVPLLP--GAATPSEVMALREEGYTVL 121 (201)
T ss_pred ------------HHHHHHHHHcCCCEeC--CCCCHHHHHHHHHCCCCEE
Confidence 2466777778999999 9999999999999999999
|
|
| >cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.3e-09 Score=97.99 Aligned_cols=100 Identities=26% Similarity=0.464 Sum_probs=86.1
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhcc-cccc-----------------------
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFL-ENSA----------------------- 244 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~-~~~~----------------------- 244 (590)
++++.++++.| .+.+++.+||+++ ++++|++|.+|+... ....
T Consensus 9 ~~~~~~~~~~~---------~~~~~~~~~Vvd~----~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (143)
T cd04634 9 DDTISDAARLL---------RENKISGAPVLDG----GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFIN 75 (143)
T ss_pred CCCHHHHHHHH---------HHcCCCcceEeEC----CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheee
Confidence 77899999999 8889999999996 899999999998722 1100
Q ss_pred ----------ccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 245 ----------NMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 245 ----------~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
....++.++|.+ +++++++++++.+++..|.+++.+.+||+++ |+++|++|..|+++
T Consensus 76 ~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~~ 142 (143)
T cd04634 76 WEETKRALTDAGKMKVRDIMTK--KVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDIIE 142 (143)
T ss_pred hHHHHHHHHHHhcCCHHHHcCC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 024578899988 8999999999999999999999999999987 99999999999875
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.3e-08 Score=100.26 Aligned_cols=126 Identities=21% Similarity=0.235 Sum_probs=90.2
Q ss_pred HHHHHHHHHcCCcEEEEecCCCch---hhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEccc-ccccCC
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGNS---IYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKF-IKKEYP 407 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~~---~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~-~~~~~~ 407 (590)
.+.++.+.++|++++.++.+.... ....+.++.+++. +++++++ ++.+.+.++.+.++|+|++.+... .+..
T Consensus 78 ~~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~-~~i~vi~-~v~t~ee~~~a~~~G~d~i~~~~~g~t~~-- 153 (221)
T PRK01130 78 LKEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEY-PGQLLMA-DCSTLEEGLAAQKLGFDFIGTTLSGYTEE-- 153 (221)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhC-CCCeEEE-eCCCHHHHHHHHHcCCCEEEcCCceeecC--
Confidence 356788899999998888764321 3456777777775 5788775 788999999999999999954221 1110
Q ss_pred Ccccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCC
Q psy1056 408 DMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGT 465 (590)
Q Consensus 408 ~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~ 465 (590)
...+.. ....+.++++ ..++|+++.|||+++.|+.+++++|||+|++|+.|..+
T Consensus 154 -~~~~~~~~~~~i~~i~~---~~~iPvia~GGI~t~~~~~~~l~~GadgV~iGsai~~~ 208 (221)
T PRK01130 154 -TKKPEEPDFALLKELLK---AVGCPVIAEGRINTPEQAKKALELGAHAVVVGGAITRP 208 (221)
T ss_pred -CCCCCCcCHHHHHHHHH---hCCCCEEEECCCCCHHHHHHHHHCCCCEEEEchHhcCC
Confidence 001111 2333444443 33699999999999999999999999999999998654
|
|
| >cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS) | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.3e-08 Score=104.10 Aligned_cols=126 Identities=13% Similarity=0.043 Sum_probs=90.6
Q ss_pred HHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccc
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQV 411 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~ 411 (590)
.+.++.+++.+++++.+. -|.+. .++.+++. ++.++ ..|.|.+.|+++.++|||+|.+ .+.+..|..|
T Consensus 72 ~~~l~vi~e~~v~~V~~~--~G~P~----~~~~lk~~--Gi~v~-~~v~s~~~A~~a~~~GaD~vVa---qG~EAGGH~G 139 (320)
T cd04743 72 AAQLAVVRAIKPTFALIA--GGRPD----QARALEAI--GISTY-LHVPSPGLLKQFLENGARKFIF---EGRECGGHVG 139 (320)
T ss_pred HHHHHHHHhcCCcEEEEc--CCChH----HHHHHHHC--CCEEE-EEeCCHHHHHHHHHcCCCEEEE---ecCcCcCCCC
Confidence 457788889999888753 34442 24667766 67666 4889999999999999999944 2333111111
Q ss_pred ccc-chhHHHHHHHHHh-------cCCCcEEecCCCCCHHHHHHHHHcCC--------CEEEECccccCCCCCCC
Q psy1056 412 IGR-NGTAVYRVAEYAS-------RRGVPVIADGGVQSVGHVMKALALGA--------STAMMGSLLAGTSEAPG 470 (590)
Q Consensus 412 ~g~-~~~~l~~~~~~~~-------~~~v~iia~GGi~~~~di~kalalGA--------~~v~~g~~l~~~~es~~ 470 (590)
.. +...+.++.+.+. ..++|||+.|||.++..++.|++||| ++|+||++|+.|+||+.
T Consensus 140 -~~~t~~L~~~v~~~l~~~~~~~~~~~iPViAAGGI~dgr~~aaalaLGA~~~~~Ga~~GV~mGTrFl~t~Es~~ 213 (320)
T cd04743 140 -PRSSFVLWESAIDALLAANGPDKAGKIHLLFAGGIHDERSAAMVSALAAPLAERGAKVGVLMGTAYLFTEEAVS 213 (320)
T ss_pred -CCCchhhHHHHHHHHHHhhcccccCCccEEEEcCCCCHHHHHHHHHcCCcccccccccEEEEccHHhcchhhcC
Confidence 12 3333444444332 12599999999999999999999999 79999999999999983
|
NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >TIGR00400 mgtE Mg2+ transporter (mgtE) | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.2e-09 Score=116.78 Aligned_cols=161 Identities=17% Similarity=0.240 Sum_probs=119.9
Q ss_pred CccccCCEEECCCCCHHHHHHHHHH-----cCccceeeccCCcccceeEEEEeccccccccCCCCCCCCccCCccccccc
Q psy1056 23 HGFIRDPVCIAPSTTLGKVLQMKKQ-----HGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKDLSSPLTK 97 (590)
Q Consensus 23 ~~m~~~~vtv~~~~ti~eA~~lM~~-----~~i~~lpVvd~~~~~~~lvGivT~~Did~l~~~~~~~~~~~~~~~~~l~~ 97 (590)
++|+.+.+++++++|+.+|++.|++ +++..+||+|++ ++++|+++.+ +++..+. ..++.
T Consensus 135 ~iMt~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~---~~l~GvV~l~--dLl~a~~----------~~~v~- 198 (449)
T TIGR00400 135 RIMTIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNES---KHLKGVLSIR--DLILAKP----------EEILS- 198 (449)
T ss_pred HhCcCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCC---CeEEEEEEHH--HHhcCCC----------CCcHH-
Confidence 4699999999999999999999986 667889999887 7999999999 5542100 00000
Q ss_pred ccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHHcCCcEEEEcCCCCchHHHHHHHHHhhhcCC
Q psy1056 98 KITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYP 177 (590)
Q Consensus 98 ~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~ 177 (590)
T Consensus 199 -------------------------------------------------------------------------------- 198 (449)
T TIGR00400 199 -------------------------------------------------------------------------------- 198 (449)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred Ccccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhccccccccccchhhcc
Q psy1056 178 DMQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVM 254 (590)
Q Consensus 178 ~~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~~~~~~~~V~~im 254 (590)
++|..++.+ ++++.++++.| .++++..+||+|+ +|+++|+||.+|+...-.. ...+++|
T Consensus 199 --~im~~~~~~v~~~~~~~eal~~m---------~~~~~~~lpVVD~---~g~lvGiIt~~Dil~~l~~----~~~ed~~ 260 (449)
T TIGR00400 199 --SIMRSSVFSIVGVNDQEEVARLI---------QKYDFLAVPVVDN---EGRLVGIVTVDDIIDVIQS----EATEDFY 260 (449)
T ss_pred --HHhCCCCeeECCCCCHHHHHHHH---------HHcCCCEEeEEcC---CCeEEEEEEHHHHHHHHHh----hhHHHHH
Confidence 022222221 67888999999 9999999999998 7999999999999832221 2247888
Q ss_pred ccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 255 TNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 255 ~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
+. ..++..+++++.++...|.++++..|+|. .+.|++| ..++.
T Consensus 261 ~~--~gv~~~~~~~l~~~~~~~~~~R~~wL~v~----~~~~~~t-~~ii~ 303 (449)
T TIGR00400 261 MI--AAVKPLDDSYFDTSILVMAKNRIIWLLVL----LVSSTFT-ATIIS 303 (449)
T ss_pred Hh--cCCCCCcchhhhchHHHHHHhccchHHHH----HHHHHHH-HHHHH
Confidence 87 66665567888999999999999999885 4555555 44443
|
This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer. |
| >cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.3e-09 Score=91.57 Aligned_cols=43 Identities=26% Similarity=0.361 Sum_probs=39.9
Q ss_pred CCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 28 DPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 28 ~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
+++++++++|+.+|++.|.+++.+.+||+|++ ++++|++|..|
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~---~~~~G~v~~~d 44 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVDEE---NKVLGQVTLSD 44 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCC---CCEEEEEEHHH
Confidence 57899999999999999999999999999976 79999999994
|
CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.8e-09 Score=92.06 Aligned_cols=101 Identities=13% Similarity=0.216 Sum_probs=84.2
Q ss_pred hHHHHHHHHHhccccccccccccC-ceeeEEeeCCCCCCeEEEEEecchhhcc-cc----ccccccchhhccccCCCeeE
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHG-FCGFPVTENGKLGEKLLGIVTSRDVDFL-EN----SANMDLKIEKVMTNVNEIIS 262 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~-~~~~pVvd~~~~~~~lvGivt~~Dl~~~-~~----~~~~~~~V~~im~~~~~~~t 262 (590)
++++.++++.| ...+ ++.+||+++ ++++|+++..|+... .. ......++.++|.+ ++++
T Consensus 9 ~~~~~~~~~~~---------~~~~~~~~~~Vvd~----~~~~G~v~~~~l~~~~~~~~~~~~~~~~~v~~~~~~--~~~~ 73 (119)
T cd04598 9 DTTVNDVLERF---------ERDPDLSALAVVDD----GRPVGLIMREALMELLSTPYGRALYGKKPVSEVMDP--DPLI 73 (119)
T ss_pred CCcHHHHHHHH---------HhCCCccEEEEEEC----CeeEEEEEHHHHHHHHhchhhHHHHcCCcHHHhcCC--CcEE
Confidence 77899999998 7776 889999996 899999999998722 11 11124679999998 9999
Q ss_pred EcCCCCHHHHHHHHHhcCCC---cceEEcCCCceEEEEeeccccc
Q psy1056 263 AQAGISLEEANVILEKSKKG---KLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 263 v~~~~~l~ea~~~m~~~~~~---~lpVvd~~g~l~Giit~~dll~ 304 (590)
+.+++++.++++.|.+++.. ..||++++|+++|+||..|+++
T Consensus 74 v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~ 118 (119)
T cd04598 74 VEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR 118 (119)
T ss_pred ecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence 99999999999999998864 4478988999999999999875
|
The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.2e-09 Score=92.29 Aligned_cols=44 Identities=20% Similarity=0.377 Sum_probs=40.8
Q ss_pred cCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 27 ~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
++++++++++|+.+|+++|.+++++.+||+|++ |+++|++|.+|
T Consensus 1 ~~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~---~~~~Giv~~~d 44 (120)
T cd04641 1 KNIATARPDTPLIDVLDMLVERRVSALPIVDEN---GKVVDVYSRFD 44 (120)
T ss_pred CCcEEEcCCCCHHHHHHHHHHcCCCeeeEECCC---CeEEEEEeHHH
Confidence 367899999999999999999999999999876 89999999994
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >PLN02495 oxidoreductase, acting on the CH-CH group of donors | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.2e-08 Score=104.19 Aligned_cols=166 Identities=17% Similarity=0.186 Sum_probs=109.4
Q ss_pred hhHHHHHHHHHHcCCcEEEEecC--CC-----------c-hhhHHHHHHHHHHhCCCceEEecccc---C-cHHHHHHHH
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSS--QG-----------N-SIYQIEMIKFIKKEYPDMQVIGGNVL---F-GYQPRATLL 390 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~--~G-----------~-~~~~l~~i~~i~~~~~~vpvi~g~v~---s-~~~a~~l~~ 390 (590)
+++.+.++.+.+.|+|++.++.+ ++ + .+.+.+.++++++.. ++|+++|=-. + .+-|+.+.+
T Consensus 127 ~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~~-~iPv~vKLsPn~t~i~~ia~aa~~ 205 (385)
T PLN02495 127 DAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAKA-TVPVWAKMTPNITDITQPARVALK 205 (385)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHhh-cCceEEEeCCChhhHHHHHHHHHH
Confidence 45666788888889999999863 32 1 122345557777765 6899987443 3 245667888
Q ss_pred CCCCEEEEc--------c--cccccCC---Cccccc-cc-----hhHHHH---HHHHHhc---CCCcEEecCCCCCHHHH
Q psy1056 391 NFIYQIEMI--------K--FIKKEYP---DMQVIG-RN-----GTAVYR---VAEYASR---RGVPVIADGGVQSVGHV 445 (590)
Q Consensus 391 ~Gvd~i~v~--------~--~~~~~~~---~~~~~g-~~-----~~~l~~---~~~~~~~---~~v~iia~GGi~~~~di 445 (590)
+|+|+|.+. + .+.+... +..+.| +. +.++.. +++.... .++|||+.|||.|+.|+
T Consensus 206 ~Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGlSG~alkpiAl~~v~~i~~~~~~~~~~~ipIiGvGGI~s~~Da 285 (385)
T PLN02495 206 SGCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSSKAVRPIALAKVMAIAKMMKSEFPEDRSLSGIGGVETGGDA 285 (385)
T ss_pred hCCCEEEEecccCcccccccccCccccccCCCCCCCCccchhhhHHHHHHHHHHHHHHhhhccCCCcEEEECCCCCHHHH
Confidence 999999761 1 1111000 011112 12 223332 3333221 14899999999999999
Q ss_pred HHHHHcCCCEEEECccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecccceeEEee
Q psy1056 446 MKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVD 525 (590)
Q Consensus 446 ~kalalGA~~v~~g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~eg~~~~~~~ 525 (590)
++.+.+||++|++++.+. |+|.
T Consensus 286 ~e~i~aGAs~VQv~Ta~~-------------------~~Gp--------------------------------------- 307 (385)
T PLN02495 286 AEFILLGADTVQVCTGVM-------------------MHGY--------------------------------------- 307 (385)
T ss_pred HHHHHhCCCceeEeeeee-------------------ecCc---------------------------------------
Confidence 999999999999999872 1220
Q ss_pred CCchhchHHHHHhhhhhhCcccCcCcHHHHHHh
Q psy1056 526 KGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRAM 558 (590)
Q Consensus 526 ~~~~~~~~~~~~~~l~~~m~~~G~~~i~~l~~~ 558 (590)
.++..+..+|+.-|.--|.++++|++..
T Consensus 308 -----~vi~~i~~~L~~~m~~~G~~si~e~~G~ 335 (385)
T PLN02495 308 -----PLVKNLCAELQDFMKKHNFSSIEDFRGA 335 (385)
T ss_pred -----HHHHHHHHHHHHHHHHcCCCCHHHHhCc
Confidence 2377888888888888999999999865
|
|
| >PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4 | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.4e-08 Score=96.96 Aligned_cols=106 Identities=28% Similarity=0.372 Sum_probs=85.2
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCC
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPD 408 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~ 408 (590)
++..+.++.+.+.|+..+.|..... ...+.|+.+++++|++.+.+|+|.+.+++++++++|++++ ||++..
T Consensus 20 ~~a~~~~~al~~gGi~~iEiT~~t~---~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~Fi-vSP~~~----- 90 (196)
T PF01081_consen 20 EDAVPIAEALIEGGIRAIEITLRTP---NALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFI-VSPGFD----- 90 (196)
T ss_dssp GGHHHHHHHHHHTT--EEEEETTST---THHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEE-EESS-------
T ss_pred HHHHHHHHHHHHCCCCEEEEecCCc---cHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEE-ECCCCC-----
Confidence 4667889999999999999987643 3578899999999999999999999999999999999999 554433
Q ss_pred ccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEE
Q psy1056 409 MQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTA 456 (590)
Q Consensus 409 ~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v 456 (590)
.++.+.|.+.++|+|. |+.||.|+.+|+.+||+.|
T Consensus 91 -----------~~v~~~~~~~~i~~iP--G~~TptEi~~A~~~G~~~v 125 (196)
T PF01081_consen 91 -----------PEVIEYAREYGIPYIP--GVMTPTEIMQALEAGADIV 125 (196)
T ss_dssp -----------HHHHHHHHHHTSEEEE--EESSHHHHHHHHHTT-SEE
T ss_pred -----------HHHHHHHHHcCCcccC--CcCCHHHHHHHHHCCCCEE
Confidence 3466677777899999 9999999999999999999
|
1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A .... |
| >TIGR01137 cysta_beta cystathionine beta-synthase | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.5e-09 Score=114.99 Aligned_cols=114 Identities=27% Similarity=0.330 Sum_probs=93.1
Q ss_pred CCCcccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhc--cccccccccch
Q psy1056 176 YPDMQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDF--LENSANMDLKI 250 (590)
Q Consensus 176 ~~~~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~--~~~~~~~~~~V 250 (590)
.+..++|..++.+ ++++.++++.| .+++++.+||+|+ +++++|+||.+|+.. .........++
T Consensus 335 ~~v~~im~~~~~~v~~~~tl~ea~~~m---------~~~~~~~~~Vvd~---~~~~~Givt~~dl~~~~~~~~~~~~~~v 402 (454)
T TIGR01137 335 ATVKDLHLPAPVTVHPTETVGDAIEIL---------REYGFDQLPVVTE---AGKVLGSVTLRELLSALFAGKANPDDAV 402 (454)
T ss_pred CCHHHhCcCCCeEECCCCcHHHHHHHH---------HHcCCCEEEEEcC---CCeEEEEEEHHHHHHHHhccCCCcCCCH
Confidence 4445678776655 88999999999 8889999999998 689999999999973 22212234689
Q ss_pred hhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccccc
Q psy1056 251 EKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSR 306 (590)
Q Consensus 251 ~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~ 306 (590)
.++|.+ +++++++++++.+++++|.+++ .|||+++|+++|+||++|+++.+
T Consensus 403 ~~im~~--~~~~v~~~~~l~~a~~~~~~~~---~~vV~~~g~liGvvt~~dll~~l 453 (454)
T TIGR01137 403 SKVMSK--KFIQIGEGEKLSDLSKFLEKNS---SAIVTEEGKPIGVVTKIDLLSFL 453 (454)
T ss_pred HHhcCC--CCeEECCcCcHHHHHHHHHHCC---eeEEEECCEEEEEEEHHHHHHhh
Confidence 999998 8999999999999999998864 46666679999999999998763
|
Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven. |
| >cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.2e-08 Score=97.10 Aligned_cols=123 Identities=20% Similarity=0.145 Sum_probs=90.2
Q ss_pred HHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccc
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQV 411 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~ 411 (590)
...++.+.++|+|+| +.+.-.+ ..-+.++.+|.+| +.|+++ ++.|.++|.+++++|+|+| .++.. +.++
T Consensus 77 ~~Ea~~L~eaGvDiI--DaT~r~r-P~~~~~~~iK~~~-~~l~MA-D~stleEal~a~~~Gad~I----~TTl~--gyT~ 145 (283)
T cd04727 77 FVEAQILEALGVDMI--DESEVLT-PADEEHHIDKHKF-KVPFVC-GARNLGEALRRISEGAAMI----RTKGE--AGTG 145 (283)
T ss_pred HHHHHHHHHcCCCEE--eccCCCC-cHHHHHHHHHHHc-CCcEEc-cCCCHHHHHHHHHCCCCEE----EecCC--CCCC
Confidence 577889999999999 4333222 2467888999999 888876 9999999999999999999 44421 1121
Q ss_pred c-------------------ccchhH-----------HHHHHHHHhcCCCcEE--ecCCCCCHHHHHHHHHcCCCEEEEC
Q psy1056 412 I-------------------GRNGTA-----------VYRVAEYASRRGVPVI--ADGGVQSVGHVMKALALGASTAMMG 459 (590)
Q Consensus 412 ~-------------------g~~~~~-----------l~~~~~~~~~~~v~ii--a~GGi~~~~di~kalalGA~~v~~g 459 (590)
. |+|.+. +..+.+..+..++||| |.|||.|+.++.+++.+||++|++|
T Consensus 146 ~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~~~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVG 225 (283)
T cd04727 146 NVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYELVKETAKLGRLPVVNFAAGGVATPADAALMMQLGADGVFVG 225 (283)
T ss_pred cHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEc
Confidence 1 221111 1223444444469997 9999999999999999999999999
Q ss_pred ccccCC
Q psy1056 460 SLLAGT 465 (590)
Q Consensus 460 ~~l~~~ 465 (590)
+.+..+
T Consensus 226 SAI~~a 231 (283)
T cd04727 226 SGIFKS 231 (283)
T ss_pred HHhhcC
Confidence 999643
|
Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings. |
| >PF00571 CBS: CBS domain CBS domain web page | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.4e-09 Score=80.02 Aligned_cols=55 Identities=35% Similarity=0.566 Sum_probs=52.2
Q ss_pred hhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccccc
Q psy1056 250 IEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSR 306 (590)
Q Consensus 250 V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~ 306 (590)
|+++|++ +++++++++++.++++.|.+++++++||+|++|+++|+||.+||++..
T Consensus 1 v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l 55 (57)
T PF00571_consen 1 VGDIMTP--PPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKAL 55 (57)
T ss_dssp HHHHSBS--SSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHH
T ss_pred CeECCcC--CCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhh
Confidence 5789999 999999999999999999999999999999999999999999998753
|
Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A .... |
| >cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.82 E-value=6.9e-08 Score=99.22 Aligned_cols=134 Identities=21% Similarity=0.175 Sum_probs=90.9
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCC----------chhhHHHHHHHHHHhCCCceEEeccc--cC----cHHHHHHHHCC
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQG----------NSIYQIEMIKFIKKEYPDMQVIGGNV--LF----GYQPRATLLNF 392 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G----------~~~~~l~~i~~i~~~~~~vpvi~g~v--~s----~~~a~~l~~~G 392 (590)
++..+.++.+.+.|++.+.++.+-. +...+.+.++.+++.. +.|+++|-- .+ .+.++.+.++|
T Consensus 111 ~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~~~~~~~~~~~a~~l~~~G 189 (289)
T cd02810 111 EDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAV-DIPLLVKLSPYFDLEDIVELAKAAERAG 189 (289)
T ss_pred HHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHcc-CCCEEEEeCCCCCHHHHHHHHHHHHHcC
Confidence 4566778888888999999985421 2244568889999887 788887622 23 56678888999
Q ss_pred CCEEEEccccccc-------C-CCccc-ccc-----chhHHHHHHHHHhcC--CCcEEecCCCCCHHHHHHHHHcCCCEE
Q psy1056 393 IYQIEMIKFIKKE-------Y-PDMQV-IGR-----NGTAVYRVAEYASRR--GVPVIADGGVQSVGHVMKALALGASTA 456 (590)
Q Consensus 393 vd~i~v~~~~~~~-------~-~~~~~-~g~-----~~~~l~~~~~~~~~~--~v~iia~GGi~~~~di~kalalGA~~v 456 (590)
+|+|.+....... . ....+ .|+ .+..+..+.+..+.. ++|||+.|||.++.|+.+++++|||+|
T Consensus 190 ad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~~~~da~~~l~~GAd~V 269 (289)
T cd02810 190 ADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGASAV 269 (289)
T ss_pred CCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCccHh
Confidence 9999763221100 0 00001 111 111233344443334 699999999999999999999999999
Q ss_pred EECcccc
Q psy1056 457 MMGSLLA 463 (590)
Q Consensus 457 ~~g~~l~ 463 (590)
++|+.+.
T Consensus 270 ~vg~a~~ 276 (289)
T cd02810 270 QVATALM 276 (289)
T ss_pred eEcHHHH
Confidence 9999874
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of |
| >PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.1e-07 Score=92.79 Aligned_cols=106 Identities=21% Similarity=0.206 Sum_probs=87.0
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHH----HHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccc
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKF----IKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKK 404 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~----i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~ 404 (590)
++..+.++.+++.|+..+.|....... ++.++. +++++|++.+.+|.|.|.++++.++++|+++| ||++...
T Consensus 27 ~~a~~~~~al~~gGi~~iEiT~~tp~a---~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~Fi-VsP~~~~ 102 (222)
T PRK07114 27 EVAKKVIKACYDGGARVFEFTNRGDFA---HEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGANFI-VTPLFNP 102 (222)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCCcH---HHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCCEE-ECCCCCH
Confidence 456778999999999999998765443 344444 44667888899999999999999999999999 5554432
Q ss_pred cCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEE
Q psy1056 405 EYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTA 456 (590)
Q Consensus 405 ~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v 456 (590)
++.+.+.+.++|+|. |+.||.|+..|+.+||+.|
T Consensus 103 ----------------~v~~~~~~~~i~~iP--G~~TpsEi~~A~~~Ga~~v 136 (222)
T PRK07114 103 ----------------DIAKVCNRRKVPYSP--GCGSLSEIGYAEELGCEIV 136 (222)
T ss_pred ----------------HHHHHHHHcCCCEeC--CCCCHHHHHHHHHCCCCEE
Confidence 466777778899999 9999999999999999999
|
|
| >COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.2e-08 Score=93.38 Aligned_cols=106 Identities=29% Similarity=0.374 Sum_probs=91.9
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCC
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPD 408 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~ 408 (590)
++....++.+++.|.+.+.|...... ..+.|+.+++.+|++.+.+|.|.+++++++++++|+++| ||++.+.
T Consensus 25 e~a~~~a~Ali~gGi~~IEITl~sp~---a~e~I~~l~~~~p~~lIGAGTVL~~~q~~~a~~aGa~fi-VsP~~~~---- 96 (211)
T COG0800 25 EEALPLAKALIEGGIPAIEITLRTPA---ALEAIRALAKEFPEALIGAGTVLNPEQARQAIAAGAQFI-VSPGLNP---- 96 (211)
T ss_pred HHHHHHHHHHHHcCCCeEEEecCCCC---HHHHHHHHHHhCcccEEccccccCHHHHHHHHHcCCCEE-ECCCCCH----
Confidence 45667899999999999999775443 478999999999988888999999999999999999999 5555443
Q ss_pred ccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEE
Q psy1056 409 MQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTA 456 (590)
Q Consensus 409 ~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v 456 (590)
++.+.|..+++|++. |+.|+.++.+|+.+|++.+
T Consensus 97 ------------ev~~~a~~~~ip~~P--G~~TptEi~~Ale~G~~~l 130 (211)
T COG0800 97 ------------EVAKAANRYGIPYIP--GVATPTEIMAALELGASAL 130 (211)
T ss_pred ------------HHHHHHHhCCCcccC--CCCCHHHHHHHHHcChhhe
Confidence 467777778999999 9999999999999999998
|
|
| >PRK10892 D-arabinose 5-phosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.2e-08 Score=106.73 Aligned_cols=52 Identities=15% Similarity=0.224 Sum_probs=45.6
Q ss_pred hhhcccCcccc--CCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEecccc
Q psy1056 17 KVKKYKHGFIR--DPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74 (590)
Q Consensus 17 ~vk~~~~~m~~--~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Di 74 (590)
+|+++ |.+ +++++++++|+.+|+++|.+++++.+||+|++ |+++|++|.+|+
T Consensus 203 ~V~di---m~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~---g~lvGivt~~Dl 256 (326)
T PRK10892 203 RVSDI---MHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDN---MKIEGIFTDGDL 256 (326)
T ss_pred cHHHH---hCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCC---CcEEEEEecHHH
Confidence 45555 987 89999999999999999999999888888876 799999999953
|
|
| >PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.5e-07 Score=91.73 Aligned_cols=108 Identities=18% Similarity=0.242 Sum_probs=91.7
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCC---CceEEeccccCcHHHHHHHHCCCCEEEEccccccc
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYP---DMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKE 405 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~---~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~ 405 (590)
++....++.+.+.|+..+.|.... ...++.|+.++++++ ++.+.+|.|.|.+++++++++|+++| ||++..
T Consensus 25 ~~a~~~~~al~~~Gi~~iEit~~~---~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~Fi-vsP~~~-- 98 (213)
T PRK06552 25 EEALKISLAVIKGGIKAIEVTYTN---PFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFI-VSPSFN-- 98 (213)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCC---ccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEE-ECCCCC--
Confidence 456778999999999999998764 335789999999884 57788999999999999999999999 555443
Q ss_pred CCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEE
Q psy1056 406 YPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMM 458 (590)
Q Consensus 406 ~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~ 458 (590)
.++.++|.+.++|+|. |+.|+.|+..|+.+|||.+.+
T Consensus 99 --------------~~v~~~~~~~~i~~iP--G~~T~~E~~~A~~~Gad~vkl 135 (213)
T PRK06552 99 --------------RETAKICNLYQIPYLP--GCMTVTEIVTALEAGSEIVKL 135 (213)
T ss_pred --------------HHHHHHHHHcCCCEEC--CcCCHHHHHHHHHcCCCEEEE
Confidence 3467777778999999 999999999999999999975
|
|
| >COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.2e-07 Score=94.68 Aligned_cols=165 Identities=21% Similarity=0.221 Sum_probs=114.4
Q ss_pred hHHHHHHHHHHcC-CcEEEEecCCC----------chhhHHHHHHHHHHhCCCceEEeccccC----cHHHHHHHHCCCC
Q psy1056 330 ADKNRLKLLSQAG-VDVVILDSSQG----------NSIYQIEMIKFIKKEYPDMQVIGGNVLF----GYQPRATLLNFIY 394 (590)
Q Consensus 330 ~~~e~~~~li~~g-ad~i~V~~~~G----------~~~~~l~~i~~i~~~~~~vpvi~g~v~s----~~~a~~l~~~Gvd 394 (590)
...+.+..+.+.+ ++++.++.+-. +.+.+-+.++++++.. .+||.+|=-.+ .+-|+.+.++|+|
T Consensus 110 ~~~d~~~~~~~~~~ad~ielNiScPnt~g~~~l~~~~e~l~~l~~~vk~~~-~~Pv~vKl~P~~~di~~iA~~~~~~g~D 188 (310)
T COG0167 110 AWADYARLLEEAGDADAIELNISCPNTPGGRALGQDPELLEKLLEAVKAAT-KVPVFVKLAPNITDIDEIAKAAEEAGAD 188 (310)
T ss_pred HHHHHHHHHHhcCCCCEEEEEccCCCCCChhhhccCHHHHHHHHHHHHhcc-cCceEEEeCCCHHHHHHHHHHHHHcCCc
Confidence 3445666666777 89999986432 2233456667777776 69999874443 3456778889999
Q ss_pred EEEEcccccccC---------------CCccccccchhHHHHHHHHHhcCC--CcEEecCCCCCHHHHHHHHHcCCCEEE
Q psy1056 395 QIEMIKFIKKEY---------------PDMQVIGRNGTAVYRVAEYASRRG--VPVIADGGVQSVGHVMKALALGASTAM 457 (590)
Q Consensus 395 ~i~v~~~~~~~~---------------~~~~~~g~~~~~l~~~~~~~~~~~--v~iia~GGi~~~~di~kalalGA~~v~ 457 (590)
+|.+.+.+.... .|..|-.+.+.++.-+++..+..+ +|||..|||.|..|+..-+.+||++|+
T Consensus 189 gl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~al~~v~~l~~~~~~~ipIIGvGGI~s~~DA~E~i~aGA~~vQ 268 (310)
T COG0167 189 GLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIALRVVAELYKRLGGDIPIIGVGGIETGEDALEFILAGASAVQ 268 (310)
T ss_pred EEEEEeeccccccccccccccccCcCCCCcCcccchHHHHHHHHHHHHhcCCCCcEEEecCcCcHHHHHHHHHcCCchhe
Confidence 996622111010 012221224445555666655544 999999999999999999999999999
Q ss_pred ECccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecccceeEEeeCCchhchHHHHH
Q psy1056 458 MGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQ 537 (590)
Q Consensus 458 ~g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~~~~~~~~~ 537 (590)
+|+.+. |+| -.+++.+.
T Consensus 269 v~Tal~-------------------~~G--------------------------------------------p~i~~~I~ 285 (310)
T COG0167 269 VGTALI-------------------YKG--------------------------------------------PGIVKEII 285 (310)
T ss_pred eeeeee-------------------eeC--------------------------------------------chHHHHHH
Confidence 999882 233 12477888
Q ss_pred hhhhhhCcccCcCcHHHHHHh
Q psy1056 538 CGLKHGCQDIGAKSLSNLRAM 558 (590)
Q Consensus 538 ~~l~~~m~~~G~~~i~~l~~~ 558 (590)
.+|..-|---|..+|+|++..
T Consensus 286 ~~l~~~l~~~g~~si~d~iG~ 306 (310)
T COG0167 286 KGLARWLEEKGFESIQDIIGS 306 (310)
T ss_pred HHHHHHHHHcCCCCHHHHhch
Confidence 889999999999999999864
|
|
| >cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.77 E-value=2e-07 Score=96.10 Aligned_cols=133 Identities=22% Similarity=0.244 Sum_probs=88.6
Q ss_pred hhHHHHHHHHHHcCCcEEEEecC--C-----C-------chhhHHHHHHHHHHhCCCceEEeccccC----cHHHHHHHH
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSS--Q-----G-------NSIYQIEMIKFIKKEYPDMQVIGGNVLF----GYQPRATLL 390 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~--~-----G-------~~~~~l~~i~~i~~~~~~vpvi~g~v~s----~~~a~~l~~ 390 (590)
+++.+.++.+.+.|++.+.+|.+ + + +.+.+.+.++.+++.. ++|+.+|=-.. .+.++.+.+
T Consensus 113 ~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~Pv~vKl~~~~~~~~~~a~~~~~ 191 (299)
T cd02940 113 EDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAV-KIPVIAKLTPNITDIREIARAAKE 191 (299)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhc-CCCeEEECCCCchhHHHHHHHHHH
Confidence 34556677777779999999863 2 1 1234567788888776 68999884332 267788999
Q ss_pred CCCCEEEEcccc----------cc--------c-CCCccccccchhHHHHHHHHHhcC--CCcEEecCCCCCHHHHHHHH
Q psy1056 391 NFIYQIEMIKFI----------KK--------E-YPDMQVIGRNGTAVYRVAEYASRR--GVPVIADGGVQSVGHVMKAL 449 (590)
Q Consensus 391 ~Gvd~i~v~~~~----------~~--------~-~~~~~~~g~~~~~l~~~~~~~~~~--~v~iia~GGi~~~~di~kal 449 (590)
+|+|+|.+.+.. .+ . .+++.|-...+.++..+.+..+.. ++|||+.|||+++.|+.+++
T Consensus 192 ~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l 271 (299)
T cd02940 192 GGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAPEPGLPISGIGGIESWEDAAEFL 271 (299)
T ss_pred cCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHH
Confidence 999999652111 00 0 011221111122233344443434 69999999999999999999
Q ss_pred HcCCCEEEECccc
Q psy1056 450 ALGASTAMMGSLL 462 (590)
Q Consensus 450 alGA~~v~~g~~l 462 (590)
.+|||+||+|+.+
T Consensus 272 ~aGA~~V~i~ta~ 284 (299)
T cd02940 272 LLGASVVQVCTAV 284 (299)
T ss_pred HcCCChheEceee
Confidence 9999999999987
|
DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue. |
| >COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.2e-08 Score=108.37 Aligned_cols=113 Identities=22% Similarity=0.281 Sum_probs=89.7
Q ss_pred HhhhcccCccccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccccc--cccCCCCCCCCccCCccc
Q psy1056 16 LKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVD--FLENSANMDLKIEKDLSS 93 (590)
Q Consensus 16 ~~vk~~~~~m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Did--~l~~~~~~~~~~~~~~~~ 93 (590)
.+|.+. ++.+|++|+|.+||.+|++.|.+++++++.|+|++ +.+.||+|.+|+. ++. +..+..
T Consensus 149 trv~~~---~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~---~~~~GIvT~~dl~~~v~~--------~g~~~~- 213 (610)
T COG2905 149 TRVGEV---KTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDDS---GPLLGIVTRKDLRSRVIA--------DGRSKT- 213 (610)
T ss_pred HHHHHH---hcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcCC---CCccceeehHHHHHHHHh--------cCCCcc-
Confidence 455555 99999999999999999999999999999999887 8999999999531 110 000000
Q ss_pred ccccccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHHcCCcEEEEcCCCCchHHHHHHHHHhh
Q psy1056 94 PLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIK 173 (590)
Q Consensus 94 ~l~~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~~~~dvv~~~~~~~~~~~~~~~v~~vk 173 (590)
T Consensus 214 -------------------------------------------------------------------------------- 213 (610)
T COG2905 214 -------------------------------------------------------------------------------- 213 (610)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCCCcccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhh
Q psy1056 174 KEYPDMQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVD 238 (590)
Q Consensus 174 ~~~~~~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~ 238 (590)
.+..++|+.|+.+ .+-+-+|.-.| .++++.++||+++ |+++||+|..||.
T Consensus 214 --~~V~evmT~p~~svd~~~~~feAml~m---------~r~~I~hl~V~e~----gq~~Gilt~~dIl 266 (610)
T COG2905 214 --QKVSEVMTSPVISVDRGDFLFEAMLMM---------LRNRIKHLPVTED----GQPLGILTLTDIL 266 (610)
T ss_pred --cchhhhhccCceeecCcchHHHHHHHH---------HHhCCceeeeecC----CeeeEEeeHHHHH
Confidence 2223477777666 67777888888 9999999999997 9999999999998
|
|
| >cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.5e-08 Score=83.71 Aligned_cols=42 Identities=24% Similarity=0.352 Sum_probs=39.6
Q ss_pred CCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEecc
Q psy1056 28 DPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSR 72 (590)
Q Consensus 28 ~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~ 72 (590)
+++++++++|+.+|++.|.+++++.+||+|++ |+++|++|..
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~---~~~~Giv~~~ 43 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDDD---GKLSGIITER 43 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECCC---CCEEEEEEHH
Confidence 67899999999999999999999999999976 7999999999
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.6e-08 Score=106.62 Aligned_cols=130 Identities=22% Similarity=0.321 Sum_probs=105.2
Q ss_pred HHHHHHHHHhhhcCCC---cccccccccc---hHHHHHHHHHhcccccc-ccccccCceeeEEeeCCCCCCeEEEEEecc
Q psy1056 163 IYQIEMIKYIKKEYPD---MQVIGGNVVT---TDQAKNLIDAGVDGLRV-GSHGCHGFCGFPVTENGKLGEKLLGIVTSR 235 (590)
Q Consensus 163 ~~~~~~v~~vk~~~~~---~~im~~~~~~---~~~~~~a~~~m~~~~~v-~~~~~~~~~~~pVvd~~~~~~~lvGivt~~ 235 (590)
..+...++..-. ||. +.+|+..+.+ +.|+.+++..+ +. +- ....+..+.|+|+ +++++|+++.+
T Consensus 117 ~~~r~~v~~~l~-y~e~taG~~Mt~e~v~l~~~~Tv~~al~~i----r~~~~-~~e~~~~lyVvD~---~~~L~Gvvsl~ 187 (451)
T COG2239 117 PEERARVRQLLS-YPEDTAGRIMTTEFVTLPEDVTVDEALDRI----RERAE-DAETIYYLYVVDE---KGKLLGVVSLR 187 (451)
T ss_pred HHHHHHHHHhcC-CChhhhhccceeeeEEeccCcCHHHHHHHH----HHhcc-cccccceEEEECC---ccceEEEeeHH
Confidence 344445555544 544 4588888777 88899988887 11 00 1245678999998 78999999999
Q ss_pred hhhccccccccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccC
Q psy1056 236 DVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRD 307 (590)
Q Consensus 236 Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~ 307 (590)
++....+ +.+++++|.+ .++++.+++..+++.++|.++++-.+||||++++++|+||..|++....
T Consensus 188 ~Ll~a~~----~~~i~~im~~--~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi~ 253 (451)
T COG2239 188 DLLTAEP----DELLKDLMED--DVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVIE 253 (451)
T ss_pred HHhcCCc----HhHHHHHhcc--cceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHHH
Confidence 9986654 4789999999 8999999999999999999999999999999999999999999988755
|
|
| >cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.4e-07 Score=92.96 Aligned_cols=128 Identities=23% Similarity=0.273 Sum_probs=90.9
Q ss_pred HHHHHHHHHcCCcEEEEecCCCc-h--hhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccc-cccCC
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGN-S--IYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFI-KKEYP 407 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~-~--~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~-~~~~~ 407 (590)
.+.++.+.++|++++.++.+... . ....+.++.+++.. ++++++ ++.|.+++..+.++|+|++.+.... +..
T Consensus 82 ~~~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g-~~~iiv-~v~t~~ea~~a~~~G~d~i~~~~~g~t~~-- 157 (219)
T cd04729 82 IEEVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEY-NCLLMA-DISTLEEALNAAKLGFDIIGTTLSGYTEE-- 157 (219)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHh-CCeEEE-ECCCHHHHHHHHHcCCCEEEccCcccccc--
Confidence 35678899999999988765432 1 24567777888776 577776 7889999999999999999442211 110
Q ss_pred CccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCCC
Q psy1056 408 DMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTS 466 (590)
Q Consensus 408 ~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~~ 466 (590)
.....+.....+..+++. .++|+++.|||+++.|+.+++++|||+|++|+.|..++
T Consensus 158 ~~~~~~~~~~~l~~i~~~---~~ipvia~GGI~~~~~~~~~l~~GadgV~vGsal~~~~ 213 (219)
T cd04729 158 TAKTEDPDFELLKELRKA---LGIPVIAEGRINSPEQAAKALELGADAVVVGSAITRPE 213 (219)
T ss_pred ccCCCCCCHHHHHHHHHh---cCCCEEEeCCCCCHHHHHHHHHCCCCEEEEchHHhChH
Confidence 000011123334444433 36999999999999999999999999999999996554
|
This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates. |
| >COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.9e-08 Score=105.54 Aligned_cols=167 Identities=19% Similarity=0.128 Sum_probs=108.7
Q ss_pred hhHHHHHHHHHHhCCCceEEecccc--CcHHHHH-HHHCCCCEEEEccc---ccccC-CCcccccc-chhHHHHHHHHHh
Q psy1056 356 IYQIEMIKFIKKEYPDMQVIGGNVL--FGYQPRA-TLLNFIYQIEMIKF---IKKEY-PDMQVIGR-NGTAVYRVAEYAS 427 (590)
Q Consensus 356 ~~~l~~i~~i~~~~~~vpvi~g~v~--s~~~a~~-l~~~Gvd~i~v~~~---~~~~~-~~~~~~g~-~~~~l~~~~~~~~ 427 (590)
+.+.+.|..+|+..|..+|.+|-+. -.+++.. ..++|||.|-|+-. |+... .....||+ ....|.++.+.+.
T Consensus 288 eDLaqlI~dLk~~~~~~~I~VKlva~~~v~~iaagvakA~AD~I~IdG~~GGTGAsP~~~~~~~GiP~e~glae~~q~L~ 367 (485)
T COG0069 288 EDLAQLIKDLKEANPWAKISVKLVAEHGVGTIAAGVAKAGADVITIDGADGGTGASPLTSIDHAGIPWELGLAETHQTLV 367 (485)
T ss_pred HHHHHHHHHHHhcCCCCeEEEEEecccchHHHHhhhhhccCCEEEEcCCCCcCCCCcHhHhhcCCchHHHHHHHHHHHHH
Confidence 4456778888887766777777666 2333333 67899999977221 11110 01335777 6667777776665
Q ss_pred cC----CCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccc
Q psy1056 428 RR----GVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMD 503 (590)
Q Consensus 428 ~~----~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~ 503 (590)
.. .+-|++|||++|+.||+||++||||.|.+|+..+-+. |..-...
T Consensus 368 ~~glRd~v~l~~~Ggl~Tg~DVaka~aLGAd~v~~gTa~lia~--------------------GCim~r~---------- 417 (485)
T COG0069 368 LNGLRDKVKLIADGGLRTGADVAKAAALGADAVGFGTAALVAL--------------------GCIMCRV---------- 417 (485)
T ss_pred HcCCcceeEEEecCCccCHHHHHHHHHhCcchhhhchHHHHHh--------------------hhHhhhh----------
Confidence 44 3789999999999999999999999998886553221 1111000
Q ss_pred hhhhccccceeecccceeEEe-------eC---CchhchHHHHHhhhhhhCcccCcCcHHHHHHh
Q psy1056 504 RYFHNEMDKLKVAQGVSGAIV-------DK---GSVLRFLPYLQCGLKHGCQDIGAKSLSNLRAM 558 (590)
Q Consensus 504 ~~~~~~~~~~~~~eg~~~~~~-------~~---~~~~~~~~~~~~~l~~~m~~~G~~~i~~l~~~ 558 (590)
-+ .-..|.||-.+.| ++ ..|.+++..+..++|..|..+|-+++.||..+
T Consensus 418 --CH----~~tCp~GIaTqdp~Lrkrl~~~~~~~~v~N~~~~~a~e~rella~lG~~~l~el~g~ 476 (485)
T COG0069 418 --CH----TGTCPVGIATQDPELRKRLDVEGKPERVINYFTFVAEELRELLAALGKRSLSELIGR 476 (485)
T ss_pred --cc----CCCCCceeeecCHHHHhhcCccccHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHhcc
Confidence 00 0012333322221 11 14778899999999999999999999999854
|
|
| >TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1 | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.3e-07 Score=93.63 Aligned_cols=122 Identities=20% Similarity=0.108 Sum_probs=88.2
Q ss_pred HHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccc
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQV 411 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~ 411 (590)
...++.|.+.|+|+| |.++-.+ ..-+.++.+|.+| ++|+++ ++.+.++|.+.++.|+|.| .|+.. +.+|
T Consensus 79 ~~Ea~~L~~~GvDiI--DeTe~lr-Pade~~~~~K~~f-~vpfma-d~~~l~EAlrai~~GadmI----~Tt~e--~gTg 147 (287)
T TIGR00343 79 FVEAQILEALGVDYI--DESEVLT-PADWTFHIDKKKF-KVPFVC-GARDLGEALRRINEGAAMI----RTKGE--AGTG 147 (287)
T ss_pred HHHHHHHHHcCCCEE--EccCCCC-cHHHHHHHHHHHc-CCCEEc-cCCCHHHHHHHHHCCCCEE----ecccc--CCCc
Confidence 567888999999999 4443222 2467788889999 889876 8999999999999999999 33311 0111
Q ss_pred c---------cc----------------------chhHHHHHHHHHhcCCCcEE--ecCCCCCHHHHHHHHHcCCCEEEE
Q psy1056 412 I---------GR----------------------NGTAVYRVAEYASRRGVPVI--ADGGVQSVGHVMKALALGASTAMM 458 (590)
Q Consensus 412 ~---------g~----------------------~~~~l~~~~~~~~~~~v~ii--a~GGi~~~~di~kalalGA~~v~~ 458 (590)
. |+ ....+..+.+.++..++||| |.|||.||.|++.++.+||++|++
T Consensus 148 ~v~~av~hlr~~~~~~~~~~~~~~~~~~~~~a~~~~~~~elLkei~~~~~iPVV~fAiGGI~TPedAa~~melGAdGVaV 227 (287)
T TIGR00343 148 NIVEAVRHMRKINEEIRQIQNMLEEEDLAAVAKELRVPVELLLEVLKLGKLPVVNFAAGGVATPADAALMMQLGADGVFV 227 (287)
T ss_pred cHHHHHHHHHHHHHHHHHHhcccchhHHhhhhcccCCCHHHHHHHHHhCCCCEEEeccCCCCCHHHHHHHHHcCCCEEEE
Confidence 0 00 00011223333333469998 999999999999999999999999
Q ss_pred CccccC
Q psy1056 459 GSLLAG 464 (590)
Q Consensus 459 g~~l~~ 464 (590)
|+.+..
T Consensus 228 GSaI~k 233 (287)
T TIGR00343 228 GSGIFK 233 (287)
T ss_pred hHHhhc
Confidence 998854
|
This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals. |
| >cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.2e-08 Score=88.10 Aligned_cols=45 Identities=20% Similarity=0.469 Sum_probs=41.1
Q ss_pred cCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEecccc
Q psy1056 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74 (590)
Q Consensus 27 ~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Di 74 (590)
++++++++++|+.+|++.|.+++++.+||+|++ |+++|++|..|+
T Consensus 1 ~~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~---~~~~Giv~~~dl 45 (126)
T cd04642 1 SKVVSIDSDERVLDAFKLMRKNNISGLPVVDEK---GKLIGNISASDL 45 (126)
T ss_pred CCeEEECCCccHHHHHHHHHHhCCCcccEECCC---CcEEEEEEHHHh
Confidence 357899999999999999999999999999987 799999999953
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.4e-07 Score=90.08 Aligned_cols=108 Identities=23% Similarity=0.246 Sum_probs=90.1
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCC
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPD 408 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~ 408 (590)
++..+.++.+.+.|++.+.|..... ..++.|+.+++++|++.+.+|.|.+.++++.++++|++++ |+++...
T Consensus 27 ~~a~~i~~al~~~Gi~~iEitl~~~---~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~Fi-vsP~~~~---- 98 (212)
T PRK05718 27 EDAVPLAKALVAGGLPVLEVTLRTP---AALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFI-VSPGLTP---- 98 (212)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCc---cHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEE-ECCCCCH----
Confidence 4567789999999999999975432 3578899999999999999999999999999999999999 4433322
Q ss_pred ccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEE
Q psy1056 409 MQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMM 458 (590)
Q Consensus 409 ~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~ 458 (590)
++.+.|.+.++|++. |+.||.++..|+.+||+.|=+
T Consensus 99 ------------~vi~~a~~~~i~~iP--G~~TptEi~~a~~~Ga~~vKl 134 (212)
T PRK05718 99 ------------PLLKAAQEGPIPLIP--GVSTPSELMLGMELGLRTFKF 134 (212)
T ss_pred ------------HHHHHHHHcCCCEeC--CCCCHHHHHHHHHCCCCEEEE
Confidence 355566667899999 999999999999999999944
|
|
| >PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.6e-08 Score=103.90 Aligned_cols=52 Identities=19% Similarity=0.242 Sum_probs=47.7
Q ss_pred HhhhcccCccccC--CEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 16 LKVKKYKHGFIRD--PVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 16 ~~vk~~~~~m~~~--~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
.+|+++ |.++ ++++++++|+.+|++.|.+++.+.+||+|++ |+++|++|.+|
T Consensus 197 ~~V~~i---m~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~---g~~iG~vt~~d 250 (321)
T PRK11543 197 NKVHHL---MRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQ---QQVQGVFTDGD 250 (321)
T ss_pred hHHHHH---hccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCC---CcEEEEecHHH
Confidence 567777 9998 9999999999999999999999999999987 79999999984
|
|
| >cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.7e-08 Score=86.37 Aligned_cols=46 Identities=35% Similarity=0.650 Sum_probs=41.9
Q ss_pred ccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEecccc
Q psy1056 26 IRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74 (590)
Q Consensus 26 ~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Di 74 (590)
+++++++++++|+.++.+.|.+++++++||+|++ |+++|++|.+|+
T Consensus 1 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~---~~~~Giv~~~~l 46 (124)
T cd04600 1 SRDVVTVTPDTSLEEAWALLRRHRIKALPVVDGD---RRLVGIVTQRDL 46 (124)
T ss_pred CCCcEEeCCCCCHHHHHHHHHHcCCceeeEECCC---CCEEEEEEHHHH
Confidence 3678899999999999999999999999999986 799999999953
|
These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.9e-08 Score=87.57 Aligned_cols=44 Identities=32% Similarity=0.658 Sum_probs=41.2
Q ss_pred cCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 27 ~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
++++++++++|+.+|++.|.+++++.+||+|++ ++++|++|.+|
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~---~~~~Gii~~~d 45 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDES---GKILGMVTLGN 45 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC---CCEEEEEEHHH
Confidence 578899999999999999999999999999986 79999999994
|
The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten |
| >cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=98.70 E-value=8.7e-08 Score=84.20 Aligned_cols=43 Identities=19% Similarity=0.319 Sum_probs=40.0
Q ss_pred CCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 28 DPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 28 ~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
+++++++++++.+|++.|.+++++.+||+|++ ++++|++|..|
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~---~~~~Givt~~d 44 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDED---GDLVGVVSRKD 44 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC---CCEEEEEEHHH
Confidence 57899999999999999999999999999986 69999999994
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.3e-08 Score=88.65 Aligned_cols=88 Identities=17% Similarity=0.175 Sum_probs=70.8
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhc-cccccccc------------cchhhcc-
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDF-LENSANMD------------LKIEKVM- 254 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~-~~~~~~~~------------~~V~~im- 254 (590)
++++.++++.| .++++..+||+|+ +++++|++|.+|+.. ........ ..+.++|
T Consensus 9 ~~~l~ea~~~m---------~~~~~~~~~VvD~---~g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 76 (133)
T cd04592 9 TTTLKEALNLM---------LDEKQSCVLVVDS---DDFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCT 76 (133)
T ss_pred CCCHHHHHHHH---------HHcCCCEEEEECC---CCeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhh
Confidence 67899999999 8889999999998 799999999999872 21111000 1234565
Q ss_pred --------ccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCC
Q psy1056 255 --------TNVNEIISAQAGISLEEANVILEKSKKGKLPILNDK 290 (590)
Q Consensus 255 --------~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~ 290 (590)
++ +++++.+++++.+|+++|.+++++.+||+|++
T Consensus 77 ~~~~~~~~~~--~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~ 118 (133)
T cd04592 77 KGISYGGQEC--GLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRG 118 (133)
T ss_pred hhhhhcccCC--CCEEECCCCCHHHHHHHHHHcCCCcCCEecCC
Confidence 45 78999999999999999999999999999864
|
These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually |
| >PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.8e-07 Score=97.87 Aligned_cols=133 Identities=19% Similarity=0.129 Sum_probs=87.9
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCC--------------chhhHHHHHHHHHHhCCCceEEecccc----CcHHHHHHHH
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQG--------------NSIYQIEMIKFIKKEYPDMQVIGGNVL----FGYQPRATLL 390 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G--------------~~~~~l~~i~~i~~~~~~vpvi~g~v~----s~~~a~~l~~ 390 (590)
+...+.+..+.+.|+|++.++.+-. +...+.+.++.+++.. ++||.+|=-. -.+-|+.+.+
T Consensus 113 ~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~-~~Pv~vKl~p~~~~~~~~a~~~~~ 191 (420)
T PRK08318 113 EEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGS-RLPVIVKLTPNITDIREPARAAKR 191 (420)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhcc-CCcEEEEcCCCcccHHHHHHHHHH
Confidence 3455677777788999999986321 2234567788888776 6899987433 2356677889
Q ss_pred CCCCEEEE--c--------cccc--cc-CCCcccc-ccc-----hhHHHHHHHHHhcC---CCcEEecCCCCCHHHHHHH
Q psy1056 391 NFIYQIEM--I--------KFIK--KE-YPDMQVI-GRN-----GTAVYRVAEYASRR---GVPVIADGGVQSVGHVMKA 448 (590)
Q Consensus 391 ~Gvd~i~v--~--------~~~~--~~-~~~~~~~-g~~-----~~~l~~~~~~~~~~---~v~iia~GGi~~~~di~ka 448 (590)
+|+|+|.+ + +++. .. .++-++. |++ +-++..+++..+.. ++|||+.|||.|+.|+.+.
T Consensus 192 ~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~ 271 (420)
T PRK08318 192 GGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARDPETRGLPISGIGGIETWRDAAEF 271 (420)
T ss_pred CCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHhccccCCCCEEeecCcCCHHHHHHH
Confidence 99999964 1 1110 00 0000111 221 11344445444433 6999999999999999999
Q ss_pred HHcCCCEEEECccc
Q psy1056 449 LALGASTAMMGSLL 462 (590)
Q Consensus 449 lalGA~~v~~g~~l 462 (590)
+.+|||+||+|+.+
T Consensus 272 i~aGA~~Vqi~ta~ 285 (420)
T PRK08318 272 ILLGAGTVQVCTAA 285 (420)
T ss_pred HHhCCChheeeeee
Confidence 99999999999987
|
|
| >cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.7e-08 Score=85.99 Aligned_cols=42 Identities=24% Similarity=0.258 Sum_probs=39.0
Q ss_pred CEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 29 PVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 29 ~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
+.++++++|+.+|++.|.+++...+||+|++ |+++|++|.+|
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~---g~~~G~vt~~d 44 (114)
T cd04619 3 LAKIDVNATLQRAAKILGEPGIDLVVVCDPH---GKLAGVLTKTD 44 (114)
T ss_pred eEEECCCCcHHHHHHHHHhcCCCEEEEECCC---CCEEEEEehHH
Confidence 5689999999999999999999999999977 79999999994
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.2e-07 Score=92.53 Aligned_cols=129 Identities=22% Similarity=0.191 Sum_probs=89.8
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEE-cccccccCCC
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEM-IKFIKKEYPD 408 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v-~~~~~~~~~~ 408 (590)
...+.++.+.+.|++.+++... .. .+.++.+++. +.+++. .+.+.+.++.+.++|+|+|.+ ....+-.
T Consensus 68 ~~~~~~~~~~~~g~d~v~l~~~--~~---~~~~~~~~~~--~i~~i~-~v~~~~~~~~~~~~gad~i~~~~~~~~G~--- 136 (236)
T cd04730 68 DFEALLEVALEEGVPVVSFSFG--PP---AEVVERLKAA--GIKVIP-TVTSVEEARKAEAAGADALVAQGAEAGGH--- 136 (236)
T ss_pred CHHHHHHHHHhCCCCEEEEcCC--CC---HHHHHHHHHc--CCEEEE-eCCCHHHHHHHHHcCCCEEEEeCcCCCCC---
Confidence 3456778888999999988543 22 3445555554 567665 466788999999999999955 1111100
Q ss_pred cccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCCCCCCCce
Q psy1056 409 MQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEY 472 (590)
Q Consensus 409 ~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~~es~~~~ 472 (590)
.....+ ..+.+.++++ ..++|+++.|||+++.++.+++.+|||+|++|+.|..+.|+|+..
T Consensus 137 ~~~~~~~~~~~i~~i~~---~~~~Pvi~~GGI~~~~~v~~~l~~GadgV~vgS~l~~~~e~~~~~ 198 (236)
T cd04730 137 RGTFDIGTFALVPEVRD---AVDIPVIAAGGIADGRGIAAALALGADGVQMGTRFLATEESGASP 198 (236)
T ss_pred CCccccCHHHHHHHHHH---HhCCCEEEECCCCCHHHHHHHHHcCCcEEEEchhhhcCcccCCCH
Confidence 000001 2223333333 336899999999999999999999999999999999999998764
|
NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.5e-07 Score=92.00 Aligned_cols=125 Identities=19% Similarity=0.164 Sum_probs=88.4
Q ss_pred HHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCC-C--
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYP-D-- 408 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~-~-- 408 (590)
...++.|.+.|+|+| |.++-.+ ..-+.++.+|.+| ++|+++ ++.+.++|.+.++.|+|.| .++-+.. |
T Consensus 86 ~~Ea~~L~~~GvDiI--D~Te~lr-pad~~~~~~K~~f-~~~fma-d~~~l~EAlrai~~GadmI----~Ttge~gtg~v 156 (293)
T PRK04180 86 FVEAQILEALGVDYI--DESEVLT-PADEEYHIDKWDF-TVPFVC-GARNLGEALRRIAEGAAMI----RTKGEAGTGNV 156 (293)
T ss_pred HHHHHHHHHcCCCEE--eccCCCC-chHHHHHHHHHHc-CCCEEc-cCCCHHHHHHHHHCCCCee----eccCCCCCccH
Confidence 567888999999999 4333222 2457788889999 888876 8999999999999999999 3331100 0
Q ss_pred ---------cc-----ccccchh-----------HHHHHHHHHhcCCCcEE--ecCCCCCHHHHHHHHHcCCCEEEECcc
Q psy1056 409 ---------MQ-----VIGRNGT-----------AVYRVAEYASRRGVPVI--ADGGVQSVGHVMKALALGASTAMMGSL 461 (590)
Q Consensus 409 ---------~~-----~~g~~~~-----------~l~~~~~~~~~~~v~ii--a~GGi~~~~di~kalalGA~~v~~g~~ 461 (590)
.. =.|+|.. .+..+.+.++..++||| |.|||.||.|+..++.+||++|++|+.
T Consensus 157 ~~av~h~r~~~~~i~~L~gyt~~~~~~~a~~~~~~~elL~ei~~~~~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSa 236 (293)
T PRK04180 157 VEAVRHMRQINGEIRRLTSMSEDELYTAAKELQAPYELVKEVAELGRLPVVNFAAGGIATPADAALMMQLGADGVFVGSG 236 (293)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHhhccccCCCHHHHHHHHHhCCCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHH
Confidence 00 0022111 11223333344469998 999999999999999999999999998
Q ss_pred ccCC
Q psy1056 462 LAGT 465 (590)
Q Consensus 462 l~~~ 465 (590)
+..+
T Consensus 237 I~ks 240 (293)
T PRK04180 237 IFKS 240 (293)
T ss_pred hhcC
Confidence 8543
|
|
| >PRK11750 gltB glutamate synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=7.4e-08 Score=113.84 Aligned_cols=162 Identities=17% Similarity=0.149 Sum_probs=108.0
Q ss_pred hhHHHHHHHHHHhCCCceEEecccc---CcHHHHHHHHCCCCEEEEccccc---ccC-CCcccccc-chhHHHHHHHHHh
Q psy1056 356 IYQIEMIKFIKKEYPDMQVIGGNVL---FGYQPRATLLNFIYQIEMIKFIK---KEY-PDMQVIGR-NGTAVYRVAEYAS 427 (590)
Q Consensus 356 ~~~l~~i~~i~~~~~~vpvi~g~v~---s~~~a~~l~~~Gvd~i~v~~~~~---~~~-~~~~~~g~-~~~~l~~~~~~~~ 427 (590)
+.+.++|..+|...|..||.+|=+. -..-|.-+.++|+|+|-++-..+ ... ......|. ....|.++.+.+.
T Consensus 981 eDL~qlI~~Lk~~~~~~~I~VKl~a~~~vg~ia~gvaka~aD~I~IdG~~GGTGAap~~~~~~~GlP~e~gL~~~~~~L~ 1060 (1485)
T PRK11750 981 EDLAQLIFDLKQVNPKALVSVKLVSEPGVGTIATGVAKAYADLITISGYDGGTGASPLTSVKYAGSPWELGLAETHQALV 1060 (1485)
T ss_pred HHHHHHHHHHHHhCCCCcEEEEEccCCCccHHHhChhhcCCCEEEEeCCCCCcccccHHHHhhCCccHHHHHHHHHHHHH
Confidence 3456778889988888898887553 12223346679999997732211 000 00122344 3345667766654
Q ss_pred cC----CCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCCCC-----------CCCceEeecCeeee-eeeccccHHH
Q psy1056 428 RR----GVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSE-----------APGEYFFSDGVRLK-KYRGMGSLEA 491 (590)
Q Consensus 428 ~~----~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~~e-----------s~~~~~~~~g~~~k-~~~g~~s~~a 491 (590)
.. .+.+++|||++||.|++||++||||.|.+|+.++-+.- ||.-+-+++.+..+ .+.| .
T Consensus 1061 ~~glR~rv~l~a~Ggl~t~~Dv~kA~aLGAd~~~~gt~~lialGCi~~r~Ch~~~CPvGiaTqd~~lr~~~~~~--~--- 1135 (1485)
T PRK11750 1061 ANGLRHKIRLQVDGGLKTGLDVIKAAILGAESFGFGTGPMVALGCKYLRICHLNNCATGVATQDEKLRKNHYHG--L--- 1135 (1485)
T ss_pred hcCCCcceEEEEcCCcCCHHHHHHHHHcCCcccccchHHHHHcCCHHHHhhcCCCCCcEEeccCHHHHhhhccc--h---
Confidence 43 38999999999999999999999999999987754433 34444443332221 1111 0
Q ss_pred HhcccCCCcccchhhhccccceeecccceeEEeeCCchhchHHHHHhhhhhhCcccCcCcHHHHH
Q psy1056 492 MSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLR 556 (590)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~~~~~~~~~~~l~~~m~~~G~~~i~~l~ 556 (590)
...|.+++..+..+||..|..+|.+++.||.
T Consensus 1136 ----------------------------------~~~v~nf~~~~~~el~~~la~lG~~s~~elv 1166 (1485)
T PRK11750 1136 ----------------------------------PEMVMNYFEFIAEETREWMAQLGVRSLEDLI 1166 (1485)
T ss_pred ----------------------------------HHHHHHHHHHHHHHHHHHHHHhCCCCHHHhc
Confidence 1137788999999999999999999999993
|
|
| >cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream | Back alignment and domain information |
|---|
Probab=98.67 E-value=7.6e-08 Score=83.68 Aligned_cols=43 Identities=21% Similarity=0.359 Sum_probs=39.8
Q ss_pred CCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 28 DPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 28 ~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
+++++++++++.+|++.|.+++++.+||+|++ ++++|++|.+|
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~---~~~~G~v~~~d 45 (113)
T cd04607 3 KQLLVSPDASILDALRKIDKNALRIVLVVDEN---GRLLGTVTDGD 45 (113)
T ss_pred cceEECCCCCHHHHHHHHHhcCcCEEEEECCC---CCEEEEEEcHH
Confidence 57789999999999999999999999999987 79999999994
|
CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >PRK11573 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.2e-07 Score=101.78 Aligned_cols=132 Identities=13% Similarity=0.118 Sum_probs=101.6
Q ss_pred hHHHHHHHHHhhhc--CCCcccccccc--cc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEec
Q psy1056 162 SIYQIEMIKYIKKE--YPDMQVIGGNV--VT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTS 234 (590)
Q Consensus 162 ~~~~~~~v~~vk~~--~~~~~im~~~~--~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~ 234 (590)
.....+++..+.+- ..+.++|+... .. +++++++++.+ .+++++++||.++. .+.++|++..
T Consensus 171 ~~~e~~mi~~vl~l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~---------~~~~~SR~PVy~~~--~D~IiGiv~~ 239 (413)
T PRK11573 171 SRRNQDMLLSVLDLEKVTVDDIMVPRNEIVGIDINDDWKSILRQL---------THSPHGRIVLYRDS--LDDAISMLRV 239 (413)
T ss_pred CHHHHHHHHHHhccCCCChhhcCCccceEEEEECCCCHHHHHHHH---------HhCCCceEEEEcCC--CCceEEEEEH
Confidence 44556666666541 24456785433 22 88999999999 99999999999762 4789999999
Q ss_pred chhhccc-c-ccccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccC
Q psy1056 235 RDVDFLE-N-SANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRD 307 (590)
Q Consensus 235 ~Dl~~~~-~-~~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~ 307 (590)
+|+.... . .......+.++|. ++.+++++.++.++++.|.+++.+-..|+|+.|...|+||..|++...-
T Consensus 240 kDll~~~~~~~~~~~~~l~~~~r---~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiVTleDilEeiv 311 (413)
T PRK11573 240 REAYRLMTEKKEFTKENMLRAAD---EIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIV 311 (413)
T ss_pred HHHHHHhhccCcCCHHHHHhhcc---CCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEeeHHHHHHHHh
Confidence 9997322 1 1111123446665 7889999999999999999999999999999999999999999998765
|
|
| >COG0517 FOG: CBS domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.1e-07 Score=82.76 Aligned_cols=47 Identities=32% Similarity=0.678 Sum_probs=43.4
Q ss_pred ccccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEecccc
Q psy1056 24 GFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74 (590)
Q Consensus 24 ~m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Di 74 (590)
.|.++++++.++.++.+|+.+|.++++..+||++.+ +++|++|.+|+
T Consensus 4 ~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~~----~l~Giit~~di 50 (117)
T COG0517 4 IMTKDVITVKPDTSVRDALLLMSENGVSAVPVVDDG----KLVGIITERDI 50 (117)
T ss_pred cccCCCEEECCCCcHHHHHHHHHHcCCCEEEEeeCC----EEEEEEEHHHH
Confidence 466899999999999999999999999999999885 89999999954
|
|
| >PRK02506 dihydroorotate dehydrogenase 1A; Reviewed | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.3e-07 Score=94.83 Aligned_cols=166 Identities=17% Similarity=0.114 Sum_probs=106.1
Q ss_pred hhHHHHHHHHHHcC-CcEEEEecC--C--C------chhhHHHHHHHHHHhCCCceEEecccc---CcHHHHHHH---HC
Q psy1056 329 EADKNRLKLLSQAG-VDVVILDSS--Q--G------NSIYQIEMIKFIKKEYPDMQVIGGNVL---FGYQPRATL---LN 391 (590)
Q Consensus 329 ~~~~e~~~~li~~g-ad~i~V~~~--~--G------~~~~~l~~i~~i~~~~~~vpvi~g~v~---s~~~a~~l~---~~ 391 (590)
++..+.++.+.+++ +|++.++.+ + + +.+.+.+.++.+++.. ++|+++|=-. ..+-++.+. +.
T Consensus 105 ~~~~~~a~~~~~~g~ad~iElN~ScPn~~~~~~~g~d~~~~~~i~~~v~~~~-~~Pv~vKlsp~~~~~~~a~~~~~~~~~ 183 (310)
T PRK02506 105 EETHTILKKIQASDFNGLVELNLSCPNVPGKPQIAYDFETTEQILEEVFTYF-TKPLGVKLPPYFDIVHFDQAAAIFNKF 183 (310)
T ss_pred HHHHHHHHHHhhcCCCCEEEEECCCCCCCCccccccCHHHHHHHHHHHHHhc-CCccEEecCCCCCHHHHHHHHHHhCcC
Confidence 34455666666777 999999865 2 1 2344567788888876 6888876333 233333333 34
Q ss_pred CCCEEEE--c------c--cccccC-------CCccccccchhHHHHHHHHHhcC--CCcEEecCCCCCHHHHHHHHHcC
Q psy1056 392 FIYQIEM--I------K--FIKKEY-------PDMQVIGRNGTAVYRVAEYASRR--GVPVIADGGVQSVGHVMKALALG 452 (590)
Q Consensus 392 Gvd~i~v--~------~--~~~~~~-------~~~~~~g~~~~~l~~~~~~~~~~--~v~iia~GGi~~~~di~kalalG 452 (590)
|+++|.. + + .+.+.. .|+.|-.+.+-++..+.+..+.. ++|||+.|||.|+.|+++.+.+|
T Consensus 184 g~~~i~~~nt~~~~~~iD~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~i~aG 263 (310)
T PRK02506 184 PLAFVNCINSIGNGLVIDPEDETVVIKPKNGFGGIGGDYIKPTALANVRAFYQRLNPSIQIIGTGGVKTGRDAFEHILCG 263 (310)
T ss_pred ceEEEEEeccCCCceEEecCCCCccccCCCCCCcCCchhccHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcC
Confidence 5555532 1 0 111110 00111111333444454444443 59999999999999999999999
Q ss_pred CCEEEECccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecccceeEEeeCCchhch
Q psy1056 453 ASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRF 532 (590)
Q Consensus 453 A~~v~~g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~~~~ 532 (590)
|++|++++.+. |+| -.+
T Consensus 264 A~~Vqv~ta~~-------------------~~g--------------------------------------------p~~ 280 (310)
T PRK02506 264 ASMVQVGTALH-------------------KEG--------------------------------------------PAV 280 (310)
T ss_pred CCHHhhhHHHH-------------------HhC--------------------------------------------hHH
Confidence 99999999872 111 124
Q ss_pred HHHHHhhhhhhCcccCcCcHHHHHHh
Q psy1056 533 LPYLQCGLKHGCQDIGAKSLSNLRAM 558 (590)
Q Consensus 533 ~~~~~~~l~~~m~~~G~~~i~~l~~~ 558 (590)
+..+..+|+..|.--|.++++|++..
T Consensus 281 ~~~i~~~L~~~l~~~g~~si~e~~G~ 306 (310)
T PRK02506 281 FERLTKELKAIMAEKGYQSLEDFRGK 306 (310)
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHhCh
Confidence 77888999999999999999999864
|
|
| >cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.3e-07 Score=83.67 Aligned_cols=44 Identities=18% Similarity=0.343 Sum_probs=39.3
Q ss_pred CCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 28 DPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 28 ~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
++.++++++++.+|++.|.+++++++||+|++ +++++|++|.+|
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~--~~~~~Giv~~~d 45 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEE--SGEVIGILSQRR 45 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeCC--CCcEEEEEEHHH
Confidence 56789999999999999999999999999863 259999999994
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.1e-06 Score=86.45 Aligned_cols=181 Identities=14% Similarity=0.144 Sum_probs=114.9
Q ss_pred EcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCCCCCCcccCCceEEeEeeccchhHHHHHHHHHHcC
Q psy1056 263 AQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAG 342 (590)
Q Consensus 263 v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~g 342 (590)
+....+..+..+.+.+.+...+=|+|+++.+-|-+..-..++.... -.+.+.. .....+.++.+.++|
T Consensus 27 ~~~~~~~~~~A~~~~~~GA~~l~v~~~~~~~~g~~~~~~~i~~~v~--------iPi~~~~----~i~~~~~v~~~~~~G 94 (217)
T cd00331 27 IREDFDPVEIAKAYEKAGAAAISVLTEPKYFQGSLEDLRAVREAVS--------LPVLRKD----FIIDPYQIYEARAAG 94 (217)
T ss_pred CCCCCCHHHHHHHHHHcCCCEEEEEeCccccCCCHHHHHHHHHhcC--------CCEEECC----eecCHHHHHHHHHcC
Confidence 3445567888889999999999999888777666643333332210 1111110 011124688899999
Q ss_pred CcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHH
Q psy1056 343 VDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRV 422 (590)
Q Consensus 343 ad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~ 422 (590)
++.+++....-....+.+.++..+. + ++..++ .+.+.++++++.+.|++++-+. .+. ....+.....+.++
T Consensus 95 ad~v~l~~~~~~~~~~~~~~~~~~~-~-g~~~~v-~v~~~~e~~~~~~~g~~~i~~t---~~~---~~~~~~~~~~~~~l 165 (217)
T cd00331 95 ADAVLLIVAALDDEQLKELYELARE-L-GMEVLV-EVHDEEELERALALGAKIIGIN---NRD---LKTFEVDLNTTERL 165 (217)
T ss_pred CCEEEEeeccCCHHHHHHHHHHHHH-c-CCeEEE-EECCHHHHHHHHHcCCCEEEEe---CCC---ccccCcCHHHHHHH
Confidence 9999886654322333344444433 2 454443 5679999999999999999332 222 11112222233333
Q ss_pred HHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCC
Q psy1056 423 AEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGT 465 (590)
Q Consensus 423 ~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~ 465 (590)
.+... .++|+|+.|||.++.|+.+++.+||++|.+|+.+...
T Consensus 166 ~~~~~-~~~pvia~gGI~s~edi~~~~~~Ga~gvivGsai~~~ 207 (217)
T cd00331 166 APLIP-KDVILVSESGISTPEDVKRLAEAGADAVLIGESLMRA 207 (217)
T ss_pred HHhCC-CCCEEEEEcCCCCHHHHHHHHHcCCCEEEECHHHcCC
Confidence 33221 3589999999999999999999999999999998643
|
IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis. |
| >cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.4e-07 Score=81.40 Aligned_cols=45 Identities=27% Similarity=0.443 Sum_probs=41.5
Q ss_pred ccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 26 IRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 26 ~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
++++++++++.|+.+|++.|.+++++.+||+|++ |+++|++|.+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~---~~~~G~v~~~~ 45 (110)
T cd04605 1 SRPVVTISEDASIKEAAKLMIEENINHLPVVDED---GRLVGIVTSWD 45 (110)
T ss_pred CCCCEEECCCCCHHHHHHHHHhCCCceEEEECCC---CcEEEEEeHHH
Confidence 3678899999999999999999999999999987 89999999993
|
Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase | Back alignment and domain information |
|---|
Probab=98.62 E-value=8.6e-08 Score=99.25 Aligned_cols=71 Identities=54% Similarity=0.799 Sum_probs=63.5
Q ss_pred chHHHHHHHHHcCCcEEEEcCCCCchHHHHHHHHHhhhcCCCcccccccccchHHHHHHHHHhcccccccc
Q psy1056 137 ADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGLRVGS 207 (590)
Q Consensus 137 d~~~~~~~l~~~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~im~~~~~~~~~~~~a~~~m~~~~~v~~ 207 (590)
++.+++..|+++++|+|++|++|++.+.+.+.++++|+.+|..++|..|+.|.+..+++++..||++|||+
T Consensus 108 ~~~er~~~L~~agvD~ivID~a~g~s~~~~~~ik~ik~~~~~~~viaGNV~T~e~a~~L~~aGad~vkVGi 178 (352)
T PF00478_consen 108 DDFERAEALVEAGVDVIVIDSAHGHSEHVIDMIKKIKKKFPDVPVIAGNVVTYEGAKDLIDAGADAVKVGI 178 (352)
T ss_dssp CHHHHHHHHHHTT-SEEEEE-SSTTSHHHHHHHHHHHHHSTTSEEEEEEE-SHHHHHHHHHTT-SEEEESS
T ss_pred HHHHHHHHHHHcCCCEEEccccCccHHHHHHHHHHHHHhCCCceEEecccCCHHHHHHHHHcCCCEEEEec
Confidence 46889999999999999999999999999999999999999888999999999999999999999999996
|
These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. |
| >cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.7e-07 Score=80.53 Aligned_cols=44 Identities=30% Similarity=0.572 Sum_probs=40.7
Q ss_pred cCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 27 ~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
.++.+++++.++.+|++.|.++++..+||+|++ ++++|++|.+|
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~---~~~~G~v~~~d 45 (109)
T cd04583 2 KNPVTITPDRTLAEAIKLMRDKKVDSLLVVDKD---NKLLGIVSLES 45 (109)
T ss_pred CCCEEECCCCCHHHHHHHHHHCCCceEEEEcCC---CcEEEEEEHHH
Confidence 567889999999999999999999999999986 79999999994
|
OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz |
| >PF00571 CBS: CBS domain CBS domain web page | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.5e-08 Score=74.43 Aligned_cols=47 Identities=26% Similarity=0.615 Sum_probs=44.9
Q ss_pred ccccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 24 GFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 24 ~m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
+|.++++++++++|+.+|++.|.+++++++||+|++ ++++|++|.+|
T Consensus 4 ~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~---~~~~G~is~~d 50 (57)
T PF00571_consen 4 IMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDED---GKLVGIISRSD 50 (57)
T ss_dssp HSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTT---SBEEEEEEHHH
T ss_pred CCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecC---CEEEEEEEHHH
Confidence 399999999999999999999999999999999887 89999999995
|
Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A .... |
| >cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.7e-07 Score=83.47 Aligned_cols=43 Identities=23% Similarity=0.553 Sum_probs=39.8
Q ss_pred CCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 28 DPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 28 ~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
+++++.+++++.+|++.|.+++++.+||+|++ |+++|++|.+|
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~---~~~~Giv~~~d 44 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSD---DNFIGVITAVD 44 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCC---CcEEEEEEHHH
Confidence 57789999999999999999999999999976 79999999994
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.3e-07 Score=82.31 Aligned_cols=44 Identities=23% Similarity=0.504 Sum_probs=40.4
Q ss_pred CCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEecccc
Q psy1056 28 DPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74 (590)
Q Consensus 28 ~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Di 74 (590)
+++++++++|+.+|++.|.+++++.+||+|++ ++++|++|.+|+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~---~~~~Giv~~~dl 45 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKE---GKYVGTISLTDI 45 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECCC---CcEEEEEeHHHH
Confidence 57899999999999999999999999999986 799999999943
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.7e-07 Score=80.27 Aligned_cols=43 Identities=23% Similarity=0.510 Sum_probs=39.5
Q ss_pred CCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 28 DPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 28 ~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
++++++++.++.+|++.|.+++++.+||+|++ |+++|++|..|
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~---g~~~Giv~~~d 44 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDAD---GQPLGFVTRRE 44 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECCC---CCEEEEEeHHH
Confidence 57789999999999999999999999999876 79999999993
|
OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi |
| >cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.2e-06 Score=86.88 Aligned_cols=129 Identities=18% Similarity=0.196 Sum_probs=87.2
Q ss_pred chhHHHHHHHHHHcCCcEEEEecCC---------------CchhhHHHHHHHHHHhCCCceEEecccc-------CcHHH
Q psy1056 328 READKNRLKLLSQAGVDVVILDSSQ---------------GNSIYQIEMIKFIKKEYPDMQVIGGNVL-------FGYQP 385 (590)
Q Consensus 328 ~~~~~e~~~~li~~gad~i~V~~~~---------------G~~~~~l~~i~~i~~~~~~vpvi~g~v~-------s~~~a 385 (590)
..+..+.++.+.++|+|.+.++... .+.....+.++.+++..+ .|+.+|--. ..+-+
T Consensus 66 ~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~-~~v~vk~r~~~~~~~~~~~~~ 144 (231)
T cd02801 66 PETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVP-IPVTVKIRLGWDDEEETLELA 144 (231)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcC-CCEEEEEeeccCCchHHHHHH
Confidence 3455667788888899999998643 234556788999988874 677765211 23345
Q ss_pred HHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHc-CCCEEEECcccc
Q psy1056 386 RATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALAL-GASTAMMGSLLA 463 (590)
Q Consensus 386 ~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalal-GA~~v~~g~~l~ 463 (590)
+.+.++|+|+|.+...+... ...+. ..+..+....+..++||+++|||+++.|+.+++.. |||+||+|+.+.
T Consensus 145 ~~l~~~Gvd~i~v~~~~~~~----~~~~~--~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~igr~~l 217 (231)
T cd02801 145 KALEDAGASALTVHGRTREQ----RYSGP--ADWDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQTGVDGVMIGRGAL 217 (231)
T ss_pred HHHHHhCCCEEEECCCCHHH----cCCCC--CCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHhcCCCEEEEcHHhH
Confidence 67778999999663221110 00011 11222333333457999999999999999999998 899999998774
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. |
| >cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.8e-07 Score=80.67 Aligned_cols=44 Identities=32% Similarity=0.572 Sum_probs=40.5
Q ss_pred cCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 27 ~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
.++.++++++++.+|++.|.+++.+.+||+|++ |+++|++|.+|
T Consensus 2 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~---~~~~G~v~~~~ 45 (108)
T cd04596 2 EDTGYLTTTDTVKDWHELNKETGHSRFPVVDEK---NKVVGIVTSKD 45 (108)
T ss_pred CccEEeCCCCCHHHHHHHHHHcCCCceeEECCC---CeEEEEecHHH
Confidence 467899999999999999999999999999986 79999999993
|
The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04732 HisA HisA | Back alignment and domain information |
|---|
Probab=98.56 E-value=9.9e-07 Score=87.68 Aligned_cols=177 Identities=21% Similarity=0.212 Sum_probs=105.3
Q ss_pred CHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCCCCCCcccCCceEEeEeeccchhHHHHHHHHHHcCCcEEE
Q psy1056 268 SLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVVI 347 (590)
Q Consensus 268 ~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~gad~i~ 347 (590)
...+..+.+.+.+.+.+.|+|.++...|-=...++++..... ..-++.++..+. ..+.++.+++.|++.++
T Consensus 30 dp~~~a~~~~~~g~d~l~v~dl~~~~~~~~~~~~~i~~i~~~-----~~~pv~~~GgI~----~~e~~~~~~~~Gad~vv 100 (234)
T cd04732 30 DPVEVAKKWEEAGAKWLHVVDLDGAKGGEPVNLELIEEIVKA-----VGIPVQVGGGIR----SLEDIERLLDLGVSRVI 100 (234)
T ss_pred CHHHHHHHHHHcCCCEEEEECCCccccCCCCCHHHHHHHHHh-----cCCCEEEeCCcC----CHHHHHHHHHcCCCEEE
Confidence 445666778889999999998765322222222333322111 112334443333 35667778889999998
Q ss_pred EecCCCchhhHHHHHHHHHHhCCCceEEec-----------------cccCcHHHHHHHHCCCCEEEEcccccccCCCcc
Q psy1056 348 LDSSQGNSIYQIEMIKFIKKEYPDMQVIGG-----------------NVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQ 410 (590)
Q Consensus 348 V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g-----------------~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~ 410 (590)
+.+..-.. .+.++++.+.++.-++++. .....+-++.+.+.|++.+.+ +.+...+ .
T Consensus 101 igs~~l~d---p~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~iii---~~~~~~g-~ 173 (234)
T cd04732 101 IGTAAVKN---PELVKELLKEYGGERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEELGVKAIIY---TDISRDG-T 173 (234)
T ss_pred ECchHHhC---hHHHHHHHHHcCCceEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHcCCCEEEE---EeecCCC-c
Confidence 76543221 3455566666643122211 111235577788999999944 2111001 0
Q ss_pred ccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 411 VIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 411 ~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
.-|...+.+..+. ...++|+++.|||++..|+.+++..||++|++|+.|.
T Consensus 174 ~~g~~~~~i~~i~---~~~~ipvi~~GGi~~~~di~~~~~~Ga~gv~vg~~~~ 223 (234)
T cd04732 174 LSGPNFELYKELA---AATGIPVIASGGVSSLDDIKALKELGVAGVIVGKALY 223 (234)
T ss_pred cCCCCHHHHHHHH---HhcCCCEEEecCCCCHHHHHHHHHCCCCEEEEeHHHH
Confidence 1122333333333 3346999999999999999999999999999999883
|
Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. |
| >cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.4e-07 Score=82.20 Aligned_cols=44 Identities=18% Similarity=0.267 Sum_probs=40.2
Q ss_pred CCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEecccc
Q psy1056 28 DPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74 (590)
Q Consensus 28 ~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Di 74 (590)
++.++++++|+.+|++.|.+.+++.+||+|++ |+++|++|.+|+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~---~~~~G~v~~~dl 45 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDRD---GGVVGIITLPDL 45 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCC---CCEEEEEEHHHH
Confidence 56789999999999999999999999999986 799999999943
|
These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d |
| >TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.9e-06 Score=89.80 Aligned_cols=129 Identities=15% Similarity=0.129 Sum_probs=87.4
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCC----------C-----chhhHHHHHHHHHHhCCCceEEeccc--------cCcHHH
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQ----------G-----NSIYQIEMIKFIKKEYPDMQVIGGNV--------LFGYQP 385 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~----------G-----~~~~~l~~i~~i~~~~~~vpvi~g~v--------~s~~~a 385 (590)
+...+.+..+.++|+|.|.++..- | +...+.+.++.+++.. +.|+.+|-- ...+-+
T Consensus 75 ~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~-~~pv~vKir~g~~~~~~~~~~~a 153 (319)
T TIGR00737 75 DTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAV-DIPVTVKIRIGWDDAHINAVEAA 153 (319)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhc-CCCEEEEEEcccCCCcchHHHHH
Confidence 345567777778899999988531 1 2244567888888877 588887631 134667
Q ss_pred HHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHH-HcCCCEEEECccccC
Q psy1056 386 RATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKAL-ALGASTAMMGSLLAG 464 (590)
Q Consensus 386 ~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kal-alGA~~v~~g~~l~~ 464 (590)
+.+.++|+|+|.|...+... ++. ....+..+.++.+..++|||+.|||.++.|+.+++ ..|||+||+|+.+..
T Consensus 154 ~~l~~~G~d~i~vh~r~~~~--~~~----~~~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~gad~VmigR~~l~ 227 (319)
T TIGR00737 154 RIAEDAGAQAVTLHGRTRAQ--GYS----GEANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDGVMIGRGALG 227 (319)
T ss_pred HHHHHhCCCEEEEEcccccc--cCC----CchhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhhCCCEEEEChhhhh
Confidence 78889999999663211111 111 11112223333344569999999999999999999 578999999988753
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=98.53 E-value=4.2e-07 Score=78.77 Aligned_cols=43 Identities=26% Similarity=0.562 Sum_probs=40.0
Q ss_pred CCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 28 DPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 28 ~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
+|.++++++|+.+|++.|.+++++.+||+|++ ++++|++|.+|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~---~~~~G~v~~~d 44 (113)
T cd04615 2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDDK---KRLVGIITRYD 44 (113)
T ss_pred CCEEeeCCCcHHHHHHHHHHcCCceEeEEcCC---CCEEEEEEHHH
Confidence 57889999999999999999999999999986 79999999994
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.9e-07 Score=79.91 Aligned_cols=44 Identities=23% Similarity=0.531 Sum_probs=40.2
Q ss_pred cCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 27 ~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
+++.++++++++.+|++.|.+++++.+||+|++ ++++|++|.+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~---~~~~G~v~~~~ 44 (114)
T cd04629 1 RNPVTFTPDMSVTEAVEKLLKSKISGGPVVDDN---GNLVGFLSEQD 44 (114)
T ss_pred CCCeEeCCCCCHHHHHHHHHhcCCCCccEECCC---CeEEEEeehHH
Confidence 367889999999999999999999999999976 79999999994
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.5e-07 Score=105.96 Aligned_cols=59 Identities=10% Similarity=0.196 Sum_probs=50.2
Q ss_pred HHHHHHHHhhhcccCccccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 9 EYQANEVLKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 9 ~~~~~~~~~vk~~~~~m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
+++.....+|++. |.+++.++++++|+.|+++.|.+++.+.+||+|++ ++++|++|.+|
T Consensus 440 ~~~~L~~~~V~di---m~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~---g~lvGiVt~~d 498 (574)
T PRK01862 440 ERERLRTTQMREL---IQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDDD---GRFRGAVALKD 498 (574)
T ss_pred hhhHHhhCcHHHH---hcCCCceeCCCCCHHHHHHHHHhCCCceEEEEcCC---CeEEEEEEHHH
Confidence 3333444456665 99999999999999999999999999999999987 79999999994
|
|
| >cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50 | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.5e-07 Score=80.50 Aligned_cols=43 Identities=21% Similarity=0.249 Sum_probs=38.5
Q ss_pred CCEEECCCCCHHHHHHHHHHcC-ccceeeccCCcccceeEEEEeccc
Q psy1056 28 DPVCIAPSTTLGKVLQMKKQHG-FCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 28 ~~vtv~~~~ti~eA~~lM~~~~-i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
+..++++++|+.+|++.|.+++ .+.+||+|++ ++++|++|.+|
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~---~~~~G~v~~~d 45 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNE---GRYVGIISLAD 45 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcCC---CcEEEEEEHHH
Confidence 5678999999999999998775 8999999986 79999999994
|
CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.1e-07 Score=79.38 Aligned_cols=43 Identities=23% Similarity=0.367 Sum_probs=39.6
Q ss_pred CCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 28 DPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 28 ~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
+++++++++|+.+|+++|.+.+.+.+||+|++ |+++|++|..|
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~---~~~~G~v~~~~ 44 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDGD---GHLVGLLTRDD 44 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECCC---CcEEEEeeHHH
Confidence 56789999999999999999999999999986 79999999994
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.9e-07 Score=79.60 Aligned_cols=44 Identities=25% Similarity=0.559 Sum_probs=40.4
Q ss_pred cCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 27 ~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
+++.+++++.|+.++++.|.++++..+||+|++ ++++|++|.+|
T Consensus 1 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~---~~~~Giv~~~~ 44 (113)
T cd04623 1 RDVITVRPDATVAEAAKLMAEKNIGAVVVVDDG---GRLVGIFSERD 44 (113)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCeEEEECCC---CCEEEEEehHH
Confidence 367889999999999999999999999999986 79999999994
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.3e-07 Score=80.62 Aligned_cols=45 Identities=24% Similarity=0.490 Sum_probs=41.1
Q ss_pred cCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEecccc
Q psy1056 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74 (590)
Q Consensus 27 ~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Di 74 (590)
++++++.+++|+.+|+++|.+.+++.+||+|++ |+++|++|.+|+
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~---~~~~G~v~~~~l 45 (122)
T cd04803 1 SPVVTLSEDDSLADAEELMREHRIRHLPVVNED---GKLVGLLTQRDL 45 (122)
T ss_pred CCCEEeCCCCcHHHHHHHHHHcCcccccEECCC---CCEEEEEEHHHH
Confidence 367899999999999999999999999999986 799999999953
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >TIGR00736 nifR3_rel_arch TIM-barrel protein, putative | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.7e-06 Score=85.05 Aligned_cols=132 Identities=11% Similarity=0.034 Sum_probs=86.3
Q ss_pred EeEeecc-chhHHHHHHHHHHcCCcEEEEec--CC------C-------chhhHHHHHHHHHHhCCCceEEeccc-----
Q psy1056 321 VGAAIGT-READKNRLKLLSQAGVDVVILDS--SQ------G-------NSIYQIEMIKFIKKEYPDMQVIGGNV----- 379 (590)
Q Consensus 321 v~a~i~~-~~~~~e~~~~li~~gad~i~V~~--~~------G-------~~~~~l~~i~~i~~~~~~vpvi~g~v----- 379 (590)
+..+++. +.+....+..+++.+++.+.++. ++ | ++..+.+.++.+++. ++||.+|==
T Consensus 70 vivnv~~~~~ee~~~~a~~v~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~--~~PVsvKiR~~~~~ 147 (231)
T TIGR00736 70 VSVNVRFVDLEEAYDVLLTIAEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKEL--NKPIFVKIRGNCIP 147 (231)
T ss_pred EEEEEecCCHHHHHHHHHHHhcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHcC--CCcEEEEeCCCCCc
Confidence 4445543 22233334344566899999885 23 1 233445677777743 688887622
Q ss_pred -cCcHHHHHHHHCCCCEEEEcccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEE
Q psy1056 380 -LFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAM 457 (590)
Q Consensus 380 -~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~ 457 (590)
.+.+-|+.+.++|+|+|-|. .. ..|.+. ....+.++++... ++|||+.|||.++.|+.+.+..|||+||
T Consensus 148 ~~~~~~a~~l~~aGad~i~Vd----~~---~~g~~~a~~~~I~~i~~~~~--~ipIIgNGgI~s~eda~e~l~~GAd~Vm 218 (231)
T TIGR00736 148 LDELIDALNLVDDGFDGIHVD----AM---YPGKPYADMDLLKILSEEFN--DKIIIGNNSIDDIESAKEMLKAGADFVS 218 (231)
T ss_pred chHHHHHHHHHHcCCCEEEEe----eC---CCCCchhhHHHHHHHHHhcC--CCcEEEECCcCCHHHHHHHHHhCCCeEE
Confidence 24578899999999999552 11 222222 3344555544321 3999999999999999999999999999
Q ss_pred ECcccc
Q psy1056 458 MGSLLA 463 (590)
Q Consensus 458 ~g~~l~ 463 (590)
+|+.+.
T Consensus 219 vgR~~l 224 (231)
T TIGR00736 219 VARAIL 224 (231)
T ss_pred EcHhhc
Confidence 998663
|
Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins. |
| >cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein | Back alignment and domain information |
|---|
Probab=98.51 E-value=6.7e-07 Score=77.95 Aligned_cols=44 Identities=57% Similarity=0.998 Sum_probs=39.6
Q ss_pred cCCEEECCCCCHHHHHHHHHHcCccceeeccC---CcccceeEEEEeccc
Q psy1056 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTEN---GKLGEKLLGIVTSRD 73 (590)
Q Consensus 27 ~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~---~~~~~~lvGivT~~D 73 (590)
.+++++++++|+.+|++.|.+++++.+||+|+ + |+++|++|.+|
T Consensus 2 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~---~~~~G~v~~~d 48 (114)
T cd04602 2 TDPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSG---GKLLGIVTSRD 48 (114)
T ss_pred CCCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcC---CEEEEEEEhHH
Confidence 35778999999999999999999999999996 4 69999999994
|
IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos |
| >cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.9e-07 Score=80.22 Aligned_cols=44 Identities=34% Similarity=0.481 Sum_probs=39.0
Q ss_pred CCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 28 DPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 28 ~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
++.++++++++.+|++.|.+++++.+||+|++ .++++|++|.+|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~--~~~~~G~v~~~d 45 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRR--ESDAYGIVTMRD 45 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEECC--CCcEEEEEehHH
Confidence 56789999999999999999999999999852 159999999994
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=98.50 E-value=4.1e-07 Score=78.75 Aligned_cols=43 Identities=26% Similarity=0.445 Sum_probs=40.0
Q ss_pred CCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 28 DPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 28 ~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
++.++++++|+.+|++.|.+++++.+||+|++ ++++|++|.+|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~---~~~~G~v~~~~ 44 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPD---ERPIGIVTERD 44 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCC---CCEEEEeeHHH
Confidence 57789999999999999999999999999987 79999999994
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain | Back alignment and domain information |
|---|
Probab=98.48 E-value=5.9e-07 Score=76.67 Aligned_cols=42 Identities=43% Similarity=0.846 Sum_probs=38.4
Q ss_pred CCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 28 DPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 28 ~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
++.++++++++.++++.|.+++++.+||+|+ ++++|++|..|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~----~~~~Giv~~~~ 43 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVED----GKLVGIITSRD 43 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEEC----CEEEEEEehHH
Confidence 5778999999999999999999999999985 59999999993
|
The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=98.48 E-value=6.9e-07 Score=80.09 Aligned_cols=44 Identities=27% Similarity=0.516 Sum_probs=40.5
Q ss_pred CCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEecccc
Q psy1056 28 DPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74 (590)
Q Consensus 28 ~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Di 74 (590)
+++++++++++.+|++.|.+++++++||+|++ ++++|+++..|+
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~---~~~~G~i~~~~l 45 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNE---GRVVGIVSEGDL 45 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECCC---CCEEEEEeHHHH
Confidence 57889999999999999999999999999987 799999999954
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >TIGR03520 GldE gliding motility-associated protein GldE | Back alignment and domain information |
|---|
Probab=98.48 E-value=5.6e-07 Score=96.67 Aligned_cols=169 Identities=12% Similarity=0.154 Sum_probs=110.3
Q ss_pred cCcccc--CCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccccccccCCCCCCCCccCCccccccccc
Q psy1056 22 KHGFIR--DPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKDLSSPLTKKI 99 (590)
Q Consensus 22 ~~~m~~--~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Did~l~~~~~~~~~~~~~~~~~l~~~~ 99 (590)
+++|++ ++++++.++|+.++++.|.+++++++||.+++ .++++|+++.+ |++... .+
T Consensus 194 ~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~--~d~ivGiv~~k--Dll~~~---------------~~-- 252 (408)
T TIGR03520 194 KQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKET--IDNITGVLYIK--DLLPHL---------------NK-- 252 (408)
T ss_pred eeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCC--CCceEEEEEHH--HHHhHh---------------cc--
Confidence 456997 78999999999999999999999999999864 26999999999 554100 00
Q ss_pred ccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHHcCCcEEEEcCCCCchHHHHHHHHHhhhcCCCc
Q psy1056 100 TLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDM 179 (590)
Q Consensus 100 ~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~ 179 (590)
+... +.
T Consensus 253 -----------~~~~---------------------------------------------------------l~------ 258 (408)
T TIGR03520 253 -----------KNFD---------------------------------------------------------WQ------ 258 (408)
T ss_pred -----------CCCC---------------------------------------------------------HH------
Confidence 0000 00
Q ss_pred ccccccccc--hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhh--ccccccccccchhhccc
Q psy1056 180 QVIGGNVVT--TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVD--FLENSANMDLKIEKVMT 255 (590)
Q Consensus 180 ~im~~~~~~--~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~--~~~~~~~~~~~V~~im~ 255 (590)
++|+.+..+ +.++.++++.| .+++....+|+|+ .|..+||||..|+. ...+-.....+-.+.+.
T Consensus 259 ~~~~~~~~Vpe~~~l~~ll~~m---------~~~~~~~aiVvDE---~G~~~GiVT~eDileeivgei~de~d~~~~~i~ 326 (408)
T TIGR03520 259 SLLREPYFVPENKKLDDLLRDF---------QEKKNHLAIVVDE---YGGTSGLVTLEDIIEEIVGDISDEFDDEDLIYS 326 (408)
T ss_pred HHcCCCeEeCCCCcHHHHHHHH---------HhcCceEEEEEcC---CCCEEEEEEHHHHHHHHhCCCCCcCCcCccceE
Confidence 022222222 77888999999 9999999999998 78999999999998 22211100011122232
Q ss_pred c-CCCeeEEcCCCCHHHHHHHHHhcCCCcceEE-cCCCceEEEEe
Q psy1056 256 N-VNEIISAQAGISLEEANVILEKSKKGKLPIL-NDKGELIALIA 298 (590)
Q Consensus 256 ~-~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVv-d~~g~l~Giit 298 (590)
+ .+..+.++-..++++..+.|.-. ...+|.. ++...+-|++.
T Consensus 327 ~~~~~~~~v~G~~~l~~l~~~l~~~-~~~~~~~~~~~~Tl~G~i~ 370 (408)
T TIGR03520 327 KIDDNNYVFEGKTSLKDFYKILKLE-EDMFDEVKGEAETLAGFLL 370 (408)
T ss_pred EeCCCeEEEEeccCHHHHHHHhCCC-ccccCCcCCCCccHHHHHH
Confidence 2 12567778899999998888432 1113322 22345666654
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype. |
| >cd00452 KDPG_aldolase KDPG and KHG aldolase | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.4e-05 Score=76.97 Aligned_cols=109 Identities=25% Similarity=0.360 Sum_probs=89.2
Q ss_pred chhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCC
Q psy1056 328 READKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYP 407 (590)
Q Consensus 328 ~~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~ 407 (590)
..+..+.++.+.+.|++.+.++..+.. ..+.++.+++.+|++++.+|.+.+.+.++.+.++|++++ .....
T Consensus 15 ~~~~~~~~~~l~~~G~~~vev~~~~~~---~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~Ga~~i----~~p~~-- 85 (190)
T cd00452 15 AEDALALAEALIEGGIRAIEITLRTPG---ALEAIRALRKEFPEALIGAGTVLTPEQADAAIAAGAQFI----VSPGL-- 85 (190)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCChh---HHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEE----EcCCC--
Confidence 345667899999999999999877543 467899999999888899999999999999999999999 21111
Q ss_pred CccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEE
Q psy1056 408 DMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMM 458 (590)
Q Consensus 408 ~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~ 458 (590)
. .++.++++..+.++|. |+.|+.++.+|+.+|||.+.+
T Consensus 86 -------~----~~~~~~~~~~~~~~i~--gv~t~~e~~~A~~~Gad~i~~ 123 (190)
T cd00452 86 -------D----PEVVKAANRAGIPLLP--GVATPTEIMQALELGADIVKL 123 (190)
T ss_pred -------C----HHHHHHHHHcCCcEEC--CcCCHHHHHHHHHCCCCEEEE
Confidence 1 2345555556789998 999999999999999999976
|
This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources. |
| >cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein | Back alignment and domain information |
|---|
Probab=98.47 E-value=7.7e-07 Score=76.56 Aligned_cols=45 Identities=40% Similarity=0.843 Sum_probs=41.1
Q ss_pred cCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEecccc
Q psy1056 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74 (590)
Q Consensus 27 ~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Di 74 (590)
++++++++++++.++++.|.+++++.+||+|++ |+++|++|.+|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~---~~~~G~v~~~~l 46 (110)
T cd04601 2 RDPITVSPDATVAEALELMAEYGISGLPVVDDD---GKLVGIVTNRDL 46 (110)
T ss_pred CCCeEeCCCCcHHHHHHHHHHcCCceEEEEcCC---CEEEEEEEhhHe
Confidence 578899999999999999999999999999986 799999999943
|
IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. |
| >cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.7e-07 Score=81.92 Aligned_cols=44 Identities=25% Similarity=0.427 Sum_probs=40.5
Q ss_pred CCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEecccc
Q psy1056 28 DPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74 (590)
Q Consensus 28 ~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Di 74 (590)
++.++++++|+.+|++.|.+++++.+||+|++ ++++|++|..|+
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~---~~~~Giv~~~dl 45 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDN---GKPVGVITYRDL 45 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECCC---CCEEEEEeHHHH
Confidence 56789999999999999999999999999986 799999999953
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.5e-07 Score=81.66 Aligned_cols=45 Identities=27% Similarity=0.576 Sum_probs=41.6
Q ss_pred ccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 26 IRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 26 ~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
++++.++++++++.+|++.|.+++++++||+|++ ++++|++|.+|
T Consensus 1 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~---~~~~Gvi~~~d 45 (135)
T cd04586 1 TTDVVTVSPETSVAEAARLMLDNHISGLPVVDDD---GRLVGIVSEGD 45 (135)
T ss_pred CCCCEEeCCCCCHHHHHHHHHHcCCCCceEECCC---CCEEEEeeHHH
Confidence 3578899999999999999999999999999987 79999999994
|
BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=98.46 E-value=7e-07 Score=78.53 Aligned_cols=44 Identities=39% Similarity=0.786 Sum_probs=40.5
Q ss_pred cCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 27 ~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
++++++++++++.+|++.|.+++++++||+|++ |+++|++|..|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~---~~~~G~v~~~~ 44 (122)
T cd04635 1 REPVTCTPDDPVSKVWDLMLESGFTGLPVVQKA---GELIGIITRRD 44 (122)
T ss_pred CCCEEeCCCCcHHHHHHHHHHcCCCcccEECCC---CcEEEEEEcHH
Confidence 367899999999999999999999999999986 79999999994
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.3e-06 Score=83.72 Aligned_cols=177 Identities=21% Similarity=0.209 Sum_probs=106.1
Q ss_pred CCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCCCCCCcccCCceEEeEeeccchhHHHHHHHHHHcCCcEE
Q psy1056 267 ISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVV 346 (590)
Q Consensus 267 ~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~gad~i 346 (590)
....++.+.+.+.+.+.+-|+|.++..-|--...++++...... ..++.++..+ ...+.++.+.+.|++.+
T Consensus 28 ~dp~~~a~~~~~~g~~~l~v~dl~~~~~g~~~~~~~i~~i~~~~-----~~pi~~ggGI----~~~ed~~~~~~~Ga~~v 98 (230)
T TIGR00007 28 DDPVEAAKKWEEEGAERIHVVDLDGAKEGGPVNLPVIKKIVRET-----GVPVQVGGGI----RSLEDVEKLLDLGVDRV 98 (230)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCccccCCCCcHHHHHHHHHhc-----CCCEEEeCCc----CCHHHHHHHHHcCCCEE
Confidence 35666777789999999999998766555332333444332111 1233333322 33566778888999988
Q ss_pred EEecC-CCchhhHHHHHHHHHHhCC-C-ceEE---------ecc------ccCcHHHHHHHHCCCCEEEEcccccccCCC
Q psy1056 347 ILDSS-QGNSIYQIEMIKFIKKEYP-D-MQVI---------GGN------VLFGYQPRATLLNFIYQIEMIKFIKKEYPD 408 (590)
Q Consensus 347 ~V~~~-~G~~~~~l~~i~~i~~~~~-~-vpvi---------~g~------v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~ 408 (590)
++.+. ..+. +.+..+.+.+. + +.+. +.+ ....+-++.+.+.|++.+.+. ..++.
T Consensus 99 vlgs~~l~d~----~~~~~~~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g~~~ii~~-~~~~~--- 170 (230)
T TIGR00007 99 IIGTAAVENP----DLVKELLKEYGPERIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEELGLEGIIYT-DISRD--- 170 (230)
T ss_pred EEChHHhhCH----HHHHHHHHHhCCCcEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHhCCCCEEEEE-eecCC---
Confidence 77542 2222 33444444442 1 2111 111 112456788999999988441 11111
Q ss_pred ccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 409 MQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 409 ~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
-...|.....+..+.+ ..++|+|++|||++..|+.+++..||++|++|+.|.
T Consensus 171 g~~~g~~~~~i~~i~~---~~~ipvia~GGi~~~~di~~~~~~Gadgv~ig~a~~ 222 (230)
T TIGR00007 171 GTLSGPNFELTKELVK---AVNVPVIASGGVSSIDDLIALKKLGVYGVIVGKALY 222 (230)
T ss_pred CCcCCCCHHHHHHHHH---hCCCCEEEeCCCCCHHHHHHHHHCCCCEEEEeHHHH
Confidence 1112333333334433 356999999999999999999999999999999884
|
Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317). |
| >cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=98.45 E-value=8.5e-07 Score=76.67 Aligned_cols=43 Identities=28% Similarity=0.278 Sum_probs=39.7
Q ss_pred CCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 28 DPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 28 ~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
++.++++++++.+|++.|.+++++++||+|++ |+++|++|.+|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~---~~~~G~v~~~d 44 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNE---EKLKGVVTFTD 44 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcCC---CCEEEEEehHH
Confidence 56789999999999999999999999999986 79999999994
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure | Back alignment and domain information |
|---|
Probab=98.44 E-value=4.4e-06 Score=79.85 Aligned_cols=122 Identities=23% Similarity=0.186 Sum_probs=81.2
Q ss_pred HHHHHHcCCcEEEEecCCCch-hhHHHHHHHHHHhCCCceEEeccccCcHHHHH-HHHCCCCEEEEcccccccCCCcccc
Q psy1056 335 LKLLSQAGVDVVILDSSQGNS-IYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRA-TLLNFIYQIEMIKFIKKEYPDMQVI 412 (590)
Q Consensus 335 ~~~li~~gad~i~V~~~~G~~-~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~-l~~~Gvd~i~v~~~~~~~~~~~~~~ 412 (590)
+..+.++|++.+.++...+.. ....+.++.+++.+++.+++++-....+.... +.+.|+|++.+....... . +.
T Consensus 77 a~~~~~~g~d~v~l~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~g~d~i~~~~~~~~~---~-~~ 152 (200)
T cd04722 77 AAAARAAGADGVEIHGAVGYLAREDLELIRELREAVPDVKVVVKLSPTGELAAAAAEEAGVDEVGLGNGGGGG---G-GR 152 (200)
T ss_pred HHHHHHcCCCEEEEeccCCcHHHHHHHHHHHHHHhcCCceEEEEECCCCccchhhHHHcCCCEEEEcCCcCCC---C-Cc
Confidence 467788999999998877642 33567888888887778888764433222222 688999999663221111 1 00
Q ss_pred ccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECc
Q psy1056 413 GRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGS 460 (590)
Q Consensus 413 g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~ 460 (590)
.........+.......++|++++|||.++.++.+++.+|||++++|+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~pi~~~GGi~~~~~~~~~~~~Gad~v~vgs 200 (200)
T cd04722 153 DAVPIADLLLILAKRGSKVPVIAGGGINDPEDAAEALALGADGVIVGS 200 (200)
T ss_pred cCchhHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHhCCCEEEecC
Confidence 111111112222223456999999999999999999999999999986
|
Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN. |
| >cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE | Back alignment and domain information |
|---|
Probab=98.44 E-value=4.3e-07 Score=78.40 Aligned_cols=39 Identities=23% Similarity=0.417 Sum_probs=34.8
Q ss_pred EECCCCCHHHHHHHHHHcC-----ccceeeccCCcccceeEEEEecc
Q psy1056 31 CIAPSTTLGKVLQMKKQHG-----FCGFPVTENGKLGEKLLGIVTSR 72 (590)
Q Consensus 31 tv~~~~ti~eA~~lM~~~~-----i~~lpVvd~~~~~~~lvGivT~~ 72 (590)
++++++|+.++++.|.+++ ++.+||+|++ ++++|++|.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~---~~~~G~v~~~ 44 (109)
T cd04606 1 AVREDWTVGEALEYLRRNADDPETIYYIYVVDEE---GRLLGVVSLR 44 (109)
T ss_pred CccccCcHHHHHHHHHhccCcccceeEEEEECCC---CCEEEEEEHH
Confidence 4689999999999999887 5789999976 7999999998
|
MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain | Back alignment and domain information |
|---|
Probab=98.43 E-value=7.6e-07 Score=76.83 Aligned_cols=43 Identities=26% Similarity=0.543 Sum_probs=39.6
Q ss_pred cCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 27 ~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
+++++++++.++.+|.+.|.+++++.+||+|++ +++|+++..|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~----~~~G~v~~~d 44 (110)
T cd04595 2 SPVKTVRPEATIEEARELLLRYGHTALPVVEGG----RVVGIISRRD 44 (110)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeCC----EEEEEEEHHH
Confidence 567899999999999999999999999999885 9999999994
|
CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain | Back alignment and domain information |
|---|
Probab=98.43 E-value=9.3e-07 Score=76.32 Aligned_cols=44 Identities=27% Similarity=0.573 Sum_probs=39.1
Q ss_pred CCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 28 DPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 28 ~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
+++++++++|+.+|++.|.+++++.+||+|++ .++++|++|..|
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~--~~~~~G~v~~~~ 45 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGD--LDNIIGVVHVKD 45 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCC--CceEEEEEEHHH
Confidence 56789999999999999999999999999863 159999999994
|
CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, |
| >cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain | Back alignment and domain information |
|---|
Probab=98.42 E-value=7.6e-07 Score=76.75 Aligned_cols=43 Identities=35% Similarity=0.623 Sum_probs=39.4
Q ss_pred cCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 27 ~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
++++++++++|+.+|++.|.+++++++||+|++ +++|+++.+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----~~~G~v~~~~ 43 (110)
T cd04588 1 KPLITLNPNATLREAARLFNTHHIHGAPVVDDG----KLVGIVTLSD 43 (110)
T ss_pred CCcEEECCCCCHHHHHHHHHHcCCCEEEEeeCC----EEEEEEEHHH
Confidence 467889999999999999999999999999875 9999999993
|
Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. |
| >cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.3e-06 Score=77.73 Aligned_cols=44 Identities=32% Similarity=0.678 Sum_probs=40.4
Q ss_pred CCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEecccc
Q psy1056 28 DPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74 (590)
Q Consensus 28 ~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Di 74 (590)
+++++++++|+.+|+++|.+.+++.+||+|++ ++++|++|.+|+
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~---~~~~G~it~~dl 45 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDN---GKLTGIVTRHDI 45 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCC---CcEEEEEEHHHH
Confidence 56789999999999999999999999999987 799999999953
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >TIGR00393 kpsF KpsF/GutQ family protein | Back alignment and domain information |
|---|
Probab=98.41 E-value=5.1e-07 Score=91.62 Aligned_cols=52 Identities=25% Similarity=0.351 Sum_probs=46.6
Q ss_pred HhhhcccCccccC-CEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 16 LKVKKYKHGFIRD-PVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 16 ~~vk~~~~~m~~~-~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
.+|+++ |.++ +.++++++|+.+|++.|.+.+++.+||+|++ |+++|++|.+|
T Consensus 155 ~~v~~i---m~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~---g~~~Givt~~d 207 (268)
T TIGR00393 155 VKVKDL---MQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDEN---NQLVGVFTDGD 207 (268)
T ss_pred hhHHHH---hCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCC---CCEEEEEEcHH
Confidence 455555 9988 9999999999999999999999999999976 79999999994
|
This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli. |
| >PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=4e-06 Score=83.74 Aligned_cols=177 Identities=18% Similarity=0.165 Sum_probs=106.1
Q ss_pred CHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCCCCCCcccCCceEEeEeeccchhHHHHHHHHHHcCCcEEE
Q psy1056 268 SLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVVI 347 (590)
Q Consensus 268 ~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~gad~i~ 347 (590)
.+.+..+.+.+.+...+-+.|.++..-+.-...+.++..... ..-.+.++..+. ..+.++.+++.|++.++
T Consensus 33 ~~~e~a~~~~~~G~~~l~i~dl~~~~~~~~~~~~~i~~i~~~-----~~~~l~v~GGi~----~~~~~~~~~~~Ga~~v~ 103 (241)
T PRK13585 33 DPVEVAKRWVDAGAETLHLVDLDGAFEGERKNAEAIEKIIEA-----VGVPVQLGGGIR----SAEDAASLLDLGVDRVI 103 (241)
T ss_pred CHHHHHHHHHHcCCCEEEEEechhhhcCCcccHHHHHHHHHH-----cCCcEEEcCCcC----CHHHHHHHHHcCCCEEE
Confidence 466677778889999998888664443433333333332211 112333333332 34667778889999998
Q ss_pred EecCCCchhhHHHHHHHHHHhCCCceEE-----------ecc------ccCcHHHHHHHHCCCCEEEEcccccccCCCcc
Q psy1056 348 LDSSQGNSIYQIEMIKFIKKEYPDMQVI-----------GGN------VLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQ 410 (590)
Q Consensus 348 V~~~~G~~~~~l~~i~~i~~~~~~vpvi-----------~g~------v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~ 410 (590)
+.+..-.. .+.+..+.+.++.-.++ +++ ....+.++.+.++|++.|.+... .+. +.
T Consensus 104 iGs~~~~~---~~~~~~i~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~G~~~i~~~~~-~~~--g~- 176 (241)
T PRK13585 104 LGTAAVEN---PEIVRELSEEFGSERVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRFEELGAGSILFTNV-DVE--GL- 176 (241)
T ss_pred EChHHhhC---hHHHHHHHHHhCCCcEEEEEEeeCCEEEECCCcccCCCCHHHHHHHHHHcCCCEEEEEee-cCC--CC-
Confidence 85543211 23455566665321121 111 12356678888999999954111 111 00
Q ss_pred ccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 411 VIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 411 ~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
.-|.....+.++ +...++|+++.|||++..|+.+.+.+||++|++|+.+.
T Consensus 177 ~~g~~~~~i~~i---~~~~~iPvia~GGI~~~~di~~~~~~Ga~gv~vgsa~~ 226 (241)
T PRK13585 177 LEGVNTEPVKEL---VDSVDIPVIASGGVTTLDDLRALKEAGAAGVVVGSALY 226 (241)
T ss_pred cCCCCHHHHHHH---HHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEEHHHh
Confidence 012222333333 33446999999999999999999999999999999883
|
|
| >cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=98.41 E-value=7.6e-07 Score=77.49 Aligned_cols=43 Identities=35% Similarity=0.617 Sum_probs=37.3
Q ss_pred cCCEEECCCCCHHHHHHHHHHcC-ccceeeccCCcccceeEEEEeccc
Q psy1056 27 RDPVCIAPSTTLGKVLQMKKQHG-FCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 27 ~~~vtv~~~~ti~eA~~lM~~~~-i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
+++.++++++|+.+|++.|.+++ .+.+||+|+ ++++|++|.+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~~~~G~v~~~d 44 (115)
T cd04620 1 RHPLTVTPDTPVADAIALMSQQGDSSCVLVVEK----GRLLGIFTERD 44 (115)
T ss_pred CCCeEeCCCCcHHHHHHHHHhcCCCceEEEcCC----CcEEEEEeHHH
Confidence 36778999999999999999888 677888875 49999999994
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=98.41 E-value=4.2e-06 Score=84.39 Aligned_cols=181 Identities=14% Similarity=0.122 Sum_probs=108.5
Q ss_pred cCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCCCCCCcccCCceEEeEeeccchhHHHHHHHHHHcCC
Q psy1056 264 QAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGV 343 (590)
Q Consensus 264 ~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~ga 343 (590)
.....+.+....+.+.+...+-|.-+...+-|= ..|+....... .-.++..-.+ .+ ...+....++|+
T Consensus 67 ~~~~~~~~~A~~~~~~GA~aisvlte~~~f~g~--~~~l~~v~~~v------~iPvl~kdfi---~~-~~qi~~a~~~GA 134 (260)
T PRK00278 67 REDFDPVEIAKAYEAGGAACLSVLTDERFFQGS--LEYLRAARAAV------SLPVLRKDFI---ID-PYQIYEARAAGA 134 (260)
T ss_pred CCCCCHHHHHHHHHhCCCeEEEEecccccCCCC--HHHHHHHHHhc------CCCEEeeeec---CC-HHHHHHHHHcCC
Confidence 344556677777777777777665443333332 22222221110 0011100001 11 125778889999
Q ss_pred cEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHH
Q psy1056 344 DVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVA 423 (590)
Q Consensus 344 d~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~ 423 (590)
|++.+..+.-....+.+.++..+.. +..+++ ++.+.++++++.++|+|+|-+ +.|. ...+........++.
T Consensus 135 D~VlLi~~~l~~~~l~~li~~a~~l--Gl~~lv-evh~~~E~~~A~~~gadiIgi---n~rd---l~~~~~d~~~~~~l~ 205 (260)
T PRK00278 135 DAILLIVAALDDEQLKELLDYAHSL--GLDVLV-EVHDEEELERALKLGAPLIGI---NNRN---LKTFEVDLETTERLA 205 (260)
T ss_pred CEEEEEeccCCHHHHHHHHHHHHHc--CCeEEE-EeCCHHHHHHHHHcCCCEEEE---CCCC---cccccCCHHHHHHHH
Confidence 9999876652223344555555443 566665 899999999999999999833 2222 111111222233333
Q ss_pred HHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCCC
Q psy1056 424 EYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTS 466 (590)
Q Consensus 424 ~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~~ 466 (590)
+... ..+++|+.|||.|+.|+.+++.+|||+|.+|+.++.++
T Consensus 206 ~~~p-~~~~vIaegGI~t~ed~~~~~~~Gad~vlVGsaI~~~~ 247 (260)
T PRK00278 206 PLIP-SDRLVVSESGIFTPEDLKRLAKAGADAVLVGESLMRAD 247 (260)
T ss_pred HhCC-CCCEEEEEeCCCCHHHHHHHHHcCCCEEEECHHHcCCC
Confidence 3322 13699999999999999999999999999999997553
|
|
| >cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.1e-06 Score=75.95 Aligned_cols=44 Identities=34% Similarity=0.542 Sum_probs=40.7
Q ss_pred cCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 27 ~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
+++.++++++|+.+|++.|.+++++.+||+|++ ++++|++|..|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~G~v~~~~ 44 (114)
T cd04613 1 RDVVTIPEDTPLNELLDVIAHSPENNFPVVDDD---GRLVGIVSLDD 44 (114)
T ss_pred CCceeeCCCCcHHHHHHHHHhCCCcceeEECCC---CCEEEEEEHHH
Confidence 467889999999999999999999999999986 79999999994
|
SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a |
| >COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=7.2e-07 Score=96.66 Aligned_cols=133 Identities=17% Similarity=0.195 Sum_probs=101.1
Q ss_pred hHHHHHHHHHhhhc--CCCccccccc--ccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEec
Q psy1056 162 SIYQIEMIKYIKKE--YPDMQVIGGN--VVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTS 234 (590)
Q Consensus 162 ~~~~~~~v~~vk~~--~~~~~im~~~--~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~ 234 (590)
.....++++.+.+- .++.++|+.. +.. +++++++.+.+ .+++++++||.++. .+.++|++..
T Consensus 190 ~~~E~~mi~~v~~l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~---------~~~~~SR~PV~~~~--~D~iiGiv~~ 258 (429)
T COG1253 190 EEEEREMINNVLDLDDRTVREIMTPRTDIVALDLTDTVEELIELI---------LESGHSRIPVYDGD--LDNIIGIVHV 258 (429)
T ss_pred CHHHHHHHHHHhccCCcEeeeEeeecccEEEEcCCCCHHHHHHHH---------HhCCCCeeeEEcCC--CCcEEEEEEH
Confidence 45566666666541 3445677653 322 78999999999 99999999999942 5889999999
Q ss_pred chhhccccccccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCC
Q psy1056 235 RDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDY 308 (590)
Q Consensus 235 ~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~ 308 (590)
+|+................+. +++.+++.+++.++++.|++++.+...|+|+.|...|+||..|+++...-
T Consensus 259 Kdll~~~~~~~~~~~~~~~~~---~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~GlVTleDIiEeIvG 329 (429)
T COG1253 259 KDLLRALLDGQSDLDLRVLVR---PPLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVEGLVTLEDIIEEIVG 329 (429)
T ss_pred HHHHHHHhcCccccchhhccc---CCeEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeEEEeEHHHHHHHHhC
Confidence 999833222100111222232 78999999999999999999999999999999999999999999998764
|
|
| >cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria | Back alignment and domain information |
|---|
Probab=98.39 E-value=8.3e-07 Score=77.71 Aligned_cols=43 Identities=40% Similarity=0.790 Sum_probs=39.3
Q ss_pred cCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 27 ~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
+++.+++++.++.+|+++|.+.++..+||+|++ +++|+++..|
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~----~~~G~i~~~~ 43 (122)
T cd04585 1 KNPITVTPDTSLMEALKLMKENSIRRLPVVDRG----KLVGIVTDRD 43 (122)
T ss_pred CCCEEeCCCCcHHHHHHHHHhCCcceeeEecCC----eEEEEEeHHH
Confidence 357789999999999999999999999999875 9999999994
|
Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i |
| >PRK15094 magnesium/cobalt efflux protein CorC; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.2e-06 Score=89.79 Aligned_cols=150 Identities=17% Similarity=0.220 Sum_probs=100.0
Q ss_pred cCcccc--CCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccccccccCCCCCCCCccCCccccccccc
Q psy1056 22 KHGFIR--DPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKDLSSPLTKKI 99 (590)
Q Consensus 22 ~~~m~~--~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Did~l~~~~~~~~~~~~~~~~~l~~~~ 99 (590)
+++|+. +++++++++|+.++++.+.+++++++||++++ .++++|+++.+ |++..... .
T Consensus 70 ~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~--~d~iiGiv~~k--Dll~~~~~--------------~-- 129 (292)
T PRK15094 70 RDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISED--KDHIEGILMAK--DLLPFMRS--------------D-- 129 (292)
T ss_pred eEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCC--CCcEEEEEEHH--HHHhHhhc--------------c--
Confidence 456998 68999999999999999999999999999853 15899999999 54310000 0
Q ss_pred ccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHHcCCcEEEEcCCCCchHHHHHHHHHhhhcCCCc
Q psy1056 100 TLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDM 179 (590)
Q Consensus 100 ~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~ 179 (590)
..+ . . +.
T Consensus 130 --~~~-------~-~---------------------------------------------------------l~------ 136 (292)
T PRK15094 130 --AEA-------F-S---------------------------------------------------------MD------ 136 (292)
T ss_pred --CCc-------C-C---------------------------------------------------------HH------
Confidence 000 0 0 00
Q ss_pred ccccccccc--hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhh--ccccc-cccccch-hhc
Q psy1056 180 QVIGGNVVT--TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVD--FLENS-ANMDLKI-EKV 253 (590)
Q Consensus 180 ~im~~~~~~--~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~--~~~~~-~~~~~~V-~~i 253 (590)
++|..++++ +.++.++++.| .+++...+||+|+ .|.++|+||..|+. ....- +..+..- .++
T Consensus 137 ~l~r~~~~V~e~~~l~~~L~~m---------~~~~~~~a~VvDe---~G~viGiVTleDIle~ivGei~de~d~~~~~~i 204 (292)
T PRK15094 137 KVLRQAVVVPESKRVDRMLKEF---------RSQRYHMAIVIDE---FGGVSGLVTIEDILELIVGEIEDEYDEEDDIDF 204 (292)
T ss_pred HHcCCCcCcCCCCcHHHHHHHH---------HhcCCEEEEEEeC---CCCEEEEeEHHHHHHHHhCCCcccccccccccc
Confidence 022222222 67889999999 9999999999998 68899999999998 22111 0001111 112
Q ss_pred cccCCCeeEEcCCCCHHHHHHHH
Q psy1056 254 MTNVNEIISAQAGISLEEANVIL 276 (590)
Q Consensus 254 m~~~~~~~tv~~~~~l~ea~~~m 276 (590)
-.....-+.++-..++.+..+.+
T Consensus 205 ~~~~~~~~~v~G~~~l~dl~~~l 227 (292)
T PRK15094 205 RQLSRHTWTVRALASIEDFNEAF 227 (292)
T ss_pred EEeCCCeEEEEeccCHHHHHHHh
Confidence 21112457778888888877766
|
|
| >PRK00208 thiG thiazole synthase; Reviewed | Back alignment and domain information |
|---|
Probab=98.38 E-value=1e-05 Score=78.96 Aligned_cols=121 Identities=19% Similarity=0.192 Sum_probs=77.5
Q ss_pred HHHHHHHc-CCcEEEEecC------CCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccC
Q psy1056 334 RLKLLSQA-GVDVVILDSS------QGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEY 406 (590)
Q Consensus 334 ~~~~li~~-gad~i~V~~~------~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~ 406 (590)
.++...+. +-+.|-+..- ..+....++.-+.+.+. +.-++.--..++..|++|.++|+++| . +-....
T Consensus 81 ~a~lare~~~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~--Gf~vlpyc~~d~~~ak~l~~~G~~~v-m-Plg~pI- 155 (250)
T PRK00208 81 TARLAREALGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKE--GFVVLPYCTDDPVLAKRLEEAGCAAV-M-PLGAPI- 155 (250)
T ss_pred HHHHHHHHhCCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHC--CCEEEEEeCCCHHHHHHHHHcCCCEe-C-CCCcCC-
Confidence 34444444 4566544321 12333334444444333 33333235568999999999999999 1 101111
Q ss_pred CCcccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccC
Q psy1056 407 PDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAG 464 (590)
Q Consensus 407 ~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~ 464 (590)
-+|.|+ ++..+..+.+. .++|||++|||.+|.|+.+|+.+|||+|++|+.++.
T Consensus 156 --Gsg~gi~~~~~i~~i~e~---~~vpVIveaGI~tpeda~~AmelGAdgVlV~SAItk 209 (250)
T PRK00208 156 --GSGLGLLNPYNLRIIIEQ---ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAV 209 (250)
T ss_pred --CCCCCCCCHHHHHHHHHh---cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhC
Confidence 133466 65555555443 469999999999999999999999999999999964
|
|
| >cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain | Back alignment and domain information |
|---|
Probab=98.38 E-value=1e-06 Score=76.19 Aligned_cols=42 Identities=29% Similarity=0.540 Sum_probs=38.7
Q ss_pred CCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 28 DPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 28 ~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
++.++++++++.+|++.|.+++.+.+||+|++ +++|++|.+|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~----~~~G~v~~~d 43 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDGN----KLVGIFTSKD 43 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEECC----EEEEEEEhHH
Confidence 57789999999999999999999999999875 9999999994
|
Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai |
| >cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.8e-06 Score=81.84 Aligned_cols=97 Identities=19% Similarity=0.165 Sum_probs=67.7
Q ss_pred HHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEec
Q psy1056 358 QIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIAD 436 (590)
Q Consensus 358 ~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~ 436 (590)
.++.-+.+.+. +..++.--..++..|++|.++|++++ . +..... -+|.|+ ++..+..+.+. .++|||++
T Consensus 112 tv~aa~~L~~~--Gf~vlpyc~dd~~~ar~l~~~G~~~v-m-Plg~pI---Gsg~Gi~~~~~I~~I~e~---~~vpVI~e 181 (248)
T cd04728 112 TLKAAEILVKE--GFTVLPYCTDDPVLAKRLEDAGCAAV-M-PLGSPI---GSGQGLLNPYNLRIIIER---ADVPVIVD 181 (248)
T ss_pred HHHHHHHHHHC--CCEEEEEeCCCHHHHHHHHHcCCCEe-C-CCCcCC---CCCCCCCCHHHHHHHHHh---CCCcEEEe
Confidence 34444444333 33333235568999999999999999 1 101111 133466 66555555443 46999999
Q ss_pred CCCCCHHHHHHHHHcCCCEEEECccccC
Q psy1056 437 GGVQSVGHVMKALALGASTAMMGSLLAG 464 (590)
Q Consensus 437 GGi~~~~di~kalalGA~~v~~g~~l~~ 464 (590)
|||.+|.|+.+|+.+|||+|++|+.++.
T Consensus 182 gGI~tpeda~~AmelGAdgVlV~SAIt~ 209 (248)
T cd04728 182 AGIGTPSDAAQAMELGADAVLLNTAIAK 209 (248)
T ss_pred CCCCCHHHHHHHHHcCCCEEEEChHhcC
Confidence 9999999999999999999999999964
|
ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH). |
| >cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.5e-06 Score=74.43 Aligned_cols=42 Identities=43% Similarity=0.863 Sum_probs=38.5
Q ss_pred cCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEecc
Q psy1056 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSR 72 (590)
Q Consensus 27 ~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~ 72 (590)
+++++++++.|+.++++.|.+++...+||+|++ +++|+++.+
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~----~~~g~v~~~ 43 (107)
T cd04610 2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDNG----KVVGIVSAR 43 (107)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCCeeeEeECC----EEEEEEEHH
Confidence 567889999999999999999998899999864 999999999
|
CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.4e-06 Score=75.36 Aligned_cols=42 Identities=24% Similarity=0.398 Sum_probs=36.7
Q ss_pred CCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 28 DPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 28 ~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
++.++++++|+.+|++.|.+++...++|.++ |+++|++|.+|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~----~~~~G~v~~~d 43 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVMER----GELVGLLTFRE 43 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEeeC----CEEEEEEEHHH
Confidence 4678999999999999999888888877766 49999999994
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.5e-06 Score=74.84 Aligned_cols=43 Identities=35% Similarity=0.573 Sum_probs=39.5
Q ss_pred cCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 27 ~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
++++++++++|+.++++.|.+.+++.+||+|++ +++|+++.+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----~~~G~v~~~d 43 (111)
T cd04612 1 PDVVTVPVDLTVDEVLALMFGERHRGYPVVDDG----RLVGIVTLAD 43 (111)
T ss_pred CCCEEeCCCCcHHHHHHHHHHcCCCcceEeeCC----eEEEEEEHHH
Confidence 467899999999999999999999999999885 9999999994
|
SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an |
| >PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.1e-05 Score=80.11 Aligned_cols=176 Identities=17% Similarity=0.178 Sum_probs=107.9
Q ss_pred CHHHHHHHHHh-cCCCcceEEcCCCceEEEEeecccccccCCCCCCcccCCceEEeEeeccchhHHHHHHHHHHcCCcEE
Q psy1056 268 SLEEANVILEK-SKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVV 346 (590)
Q Consensus 268 ~l~ea~~~m~~-~~~~~lpVvd~~g~l~Giit~~dll~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~gad~i 346 (590)
+..+..+.+.+ ++.+.|-|+|=++..-|--...++++...... .-++.++..+ ...+.++.+++.|++.+
T Consensus 32 dp~~~a~~~~~~~Ga~~l~ivDLd~a~~~~~~n~~~I~~i~~~~-----~~pi~vGGGI----rs~e~v~~~l~~Ga~kv 102 (234)
T PRK13587 32 SAEESIAYYSQFECVNRIHIVDLIGAKAQHAREFDYIKSLRRLT-----TKDIEVGGGI----RTKSQIMDYFAAGINYC 102 (234)
T ss_pred CHHHHHHHHHhccCCCEEEEEECcccccCCcchHHHHHHHHhhc-----CCeEEEcCCc----CCHHHHHHHHHCCCCEE
Confidence 44446666776 78999999986544333333344444433211 1123333333 34577888899999999
Q ss_pred EEecCCCchhhHHHHHHHHHHhCCCceEEe-----cccc-------C----cHHHHHHHHCCCCEEEEcccccccCCCcc
Q psy1056 347 ILDSSQGNSIYQIEMIKFIKKEYPDMQVIG-----GNVL-------F----GYQPRATLLNFIYQIEMIKFIKKEYPDMQ 410 (590)
Q Consensus 347 ~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~-----g~v~-------s----~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~ 410 (590)
++.+.--.. .+.++.+.+.|++-.++. +.+. + .+-++++.+.|+..+.+ +.-..+| +
T Consensus 103 vigt~a~~~---~~~l~~~~~~fg~~ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~g~~~ii~---tdi~~dG-t 175 (234)
T PRK13587 103 IVGTKGIQD---TDWLKEMAHTFPGRIYLSVDAYGEDIKVNGWEEDTELNLFSFVRQLSDIPLGGIIY---TDIAKDG-K 175 (234)
T ss_pred EECchHhcC---HHHHHHHHHHcCCCEEEEEEeeCCEEEecCCcccCCCCHHHHHHHHHHcCCCEEEE---ecccCcC-C
Confidence 886643222 456777777776433321 1111 1 45567788899998733 3222111 1
Q ss_pred ccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 411 VIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 411 ~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
.-|.....+.++.+ ..++|+|++|||++..|+.+++.+||++|.+|++|
T Consensus 176 ~~G~~~~li~~l~~---~~~ipvi~~GGi~s~edi~~l~~~G~~~vivG~a~ 224 (234)
T PRK13587 176 MSGPNFELTGQLVK---ATTIPVIASGGIRHQQDIQRLASLNVHAAIIGKAA 224 (234)
T ss_pred CCccCHHHHHHHHH---hCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEhHHH
Confidence 11333333444433 34699999999999999999999999999999988
|
|
| >PRK05286 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.3e-06 Score=89.94 Aligned_cols=132 Identities=14% Similarity=0.038 Sum_probs=83.3
Q ss_pred hHHHHHHHHHHcCCcEEEEecCC----C-----chhhHHHHHHHHHHhCC----CceEEecccc------CcHHHHHHHH
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQ----G-----NSIYQIEMIKFIKKEYP----DMQVIGGNVL------FGYQPRATLL 390 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~----G-----~~~~~l~~i~~i~~~~~----~vpvi~g~v~------s~~~a~~l~~ 390 (590)
++.+.++.+- .++|++.++.+- | +...+.+.++.+++... ++||++|=-. ..+-|+.+.+
T Consensus 158 d~~~~~~~~~-~~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l~~ 236 (344)
T PRK05286 158 DYLICLEKLY-PYADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELHGYVPLLVKIAPDLSDEELDDIADLALE 236 (344)
T ss_pred HHHHHHHHHH-hhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccccCCceEEEeCCCCCHHHHHHHHHHHHH
Confidence 3344444443 359999988532 1 12345678888888764 3899987432 3456688888
Q ss_pred CCCCEEEEcccccccC-----------CCccccccchhHHHHHHHHHhcC--CCcEEecCCCCCHHHHHHHHHcCCCEEE
Q psy1056 391 NFIYQIEMIKFIKKEY-----------PDMQVIGRNGTAVYRVAEYASRR--GVPVIADGGVQSVGHVMKALALGASTAM 457 (590)
Q Consensus 391 ~Gvd~i~v~~~~~~~~-----------~~~~~~g~~~~~l~~~~~~~~~~--~v~iia~GGi~~~~di~kalalGA~~v~ 457 (590)
+|+|+|.+...+.... +++.|-.....++..+.+..+.. ++|||+.|||+|+.|+.+.+..|||+|+
T Consensus 237 ~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~aGAd~V~ 316 (344)
T PRK05286 237 HGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLVQ 316 (344)
T ss_pred hCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCHHH
Confidence 9999997743221000 00111111111233333333333 5999999999999999999999999999
Q ss_pred ECccc
Q psy1056 458 MGSLL 462 (590)
Q Consensus 458 ~g~~l 462 (590)
+|+.+
T Consensus 317 v~~~~ 321 (344)
T PRK05286 317 IYSGL 321 (344)
T ss_pred HHHHH
Confidence 99987
|
|
| >cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2 | Back alignment and domain information |
|---|
Probab=98.35 E-value=5.8e-06 Score=86.36 Aligned_cols=121 Identities=14% Similarity=0.077 Sum_probs=77.4
Q ss_pred CCcEEEEecCCC---------chhhHHHHHHHHHHhCC----CceEEecccc------CcHHHHHHHHCCCCEEEEcccc
Q psy1056 342 GVDVVILDSSQG---------NSIYQIEMIKFIKKEYP----DMQVIGGNVL------FGYQPRATLLNFIYQIEMIKFI 402 (590)
Q Consensus 342 gad~i~V~~~~G---------~~~~~l~~i~~i~~~~~----~vpvi~g~v~------s~~~a~~l~~~Gvd~i~v~~~~ 402 (590)
.++++.++.+-. +...+.+.++.+++... ++|+.+|=-. ..+-++.+.++|+|+|.+...+
T Consensus 160 ~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~ 239 (327)
T cd04738 160 YADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTT 239 (327)
T ss_pred hCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCc
Confidence 489999876321 12345677888887652 3788876432 2455677888999999763221
Q ss_pred cc--------cC---CCccccccchhHHHHHHHHHhcC--CCcEEecCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 403 KK--------EY---PDMQVIGRNGTAVYRVAEYASRR--GVPVIADGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 403 ~~--------~~---~~~~~~g~~~~~l~~~~~~~~~~--~v~iia~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
.. .. +|+.|-...+.++..+....+.. ++|||+.|||+|+.|+.+.+..|||+||+|+.+
T Consensus 240 ~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~ipIi~~GGI~t~~da~e~l~aGAd~V~vg~~~ 312 (327)
T cd04738 240 ISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGKIPIIGVGGISSGEDAYEKIRAGASLVQLYTGL 312 (327)
T ss_pred ccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHcCCCHHhccHHH
Confidence 10 00 01111111112233333333333 599999999999999999999999999999987
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors. |
| >cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein | Back alignment and domain information |
|---|
Probab=98.35 E-value=9.2e-07 Score=76.60 Aligned_cols=43 Identities=26% Similarity=0.377 Sum_probs=39.0
Q ss_pred CCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 28 DPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 28 ~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
++.++++++|+.++++.|.+.+.+.+||+|++ ++++|+++..|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~---~~~~G~v~~~~ 45 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDED---GRLVGIFTDGD 45 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEEcCC---CCEEEEechHH
Confidence 45679999999999999999999999999987 79999999984
|
These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct |
| >cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.35 E-value=9.5e-06 Score=83.44 Aligned_cols=133 Identities=19% Similarity=0.078 Sum_probs=84.7
Q ss_pred hhHHHHHHHHHHc---CCcEEEEecC--C--C------chhhHHHHHHHHHHhCCCceEEecccc--C----cHHHHHHH
Q psy1056 329 EADKNRLKLLSQA---GVDVVILDSS--Q--G------NSIYQIEMIKFIKKEYPDMQVIGGNVL--F----GYQPRATL 389 (590)
Q Consensus 329 ~~~~e~~~~li~~---gad~i~V~~~--~--G------~~~~~l~~i~~i~~~~~~vpvi~g~v~--s----~~~a~~l~ 389 (590)
++..+.++.+.+. ++|++.++.+ + + +.+.+.+.++.+++.. ++|+++|=-. + .+-|+.+.
T Consensus 103 ~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~v~~~~-~iPv~vKl~p~~~~~~~~~~a~~l~ 181 (294)
T cd04741 103 EDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAVKAAY-SIPVGVKTPPYTDPAQFDTLAEALN 181 (294)
T ss_pred HHHHHHHHHHHhhccccccEEEEECCCCCCCCcccccCCHHHHHHHHHHHHHhc-CCCEEEEeCCCCCHHHHHHHHHHHh
Confidence 3445566666664 6999999864 2 1 2345677888888876 6899987433 2 23445555
Q ss_pred HC--CCCEEEEc--------ccccccCC---Cccccc-c-----chhHHHHHHHHHhcC--CCcEEecCCCCCHHHHHHH
Q psy1056 390 LN--FIYQIEMI--------KFIKKEYP---DMQVIG-R-----NGTAVYRVAEYASRR--GVPVIADGGVQSVGHVMKA 448 (590)
Q Consensus 390 ~~--Gvd~i~v~--------~~~~~~~~---~~~~~g-~-----~~~~l~~~~~~~~~~--~v~iia~GGi~~~~di~ka 448 (590)
++ |+|+|.+. ++..+... +..+.| . .+.++..+.+..+.. ++|||+.|||.|+.|+.+.
T Consensus 182 ~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~ 261 (294)
T cd04741 182 AFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRTFRRLLPSEIQIIGVGGVLDGRGAFRM 261 (294)
T ss_pred ccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHHHHHHhcCCCCCEEEeCCCCCHHHHHHH
Confidence 67 99999641 12101110 001111 1 222343344433333 4999999999999999999
Q ss_pred HHcCCCEEEECccc
Q psy1056 449 LALGASTAMMGSLL 462 (590)
Q Consensus 449 lalGA~~v~~g~~l 462 (590)
+.+|||+||+|+.+
T Consensus 262 l~aGA~~Vqv~ta~ 275 (294)
T cd04741 262 RLAGASAVQVGTAL 275 (294)
T ss_pred HHcCCCceeEchhh
Confidence 99999999999987
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.2e-05 Score=78.02 Aligned_cols=108 Identities=19% Similarity=0.112 Sum_probs=87.0
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCC-CceEEeccccCcHHHHHHHHCCCCEEEEcccccccCC
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYP-DMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYP 407 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~-~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~ 407 (590)
+...+.++.+++.|+..+.+..... ...+.++.++++++ ++.+.+|.|.+.++++.+.++|++++ ++.+..
T Consensus 22 ~~~~~~~~a~~~gGi~~iEvt~~~~---~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fi-vsp~~~---- 93 (206)
T PRK09140 22 DEALAHVGALIEAGFRAIEIPLNSP---DPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLI-VTPNTD---- 93 (206)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCc---cHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEE-ECCCCC----
Confidence 4566789999999999999976443 34678999999997 37788999999999999999999999 222211
Q ss_pred CccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEE
Q psy1056 408 DMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMM 458 (590)
Q Consensus 408 ~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~ 458 (590)
.++.+++...+.+++. |+.|+.|+.+|..+|||++.+
T Consensus 94 ------------~~v~~~~~~~~~~~~~--G~~t~~E~~~A~~~Gad~vk~ 130 (206)
T PRK09140 94 ------------PEVIRRAVALGMVVMP--GVATPTEAFAALRAGAQALKL 130 (206)
T ss_pred ------------HHHHHHHHHCCCcEEc--ccCCHHHHHHHHHcCCCEEEE
Confidence 2455555566789999 799999999999999999975
|
|
| >cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.9e-06 Score=74.62 Aligned_cols=43 Identities=40% Similarity=0.730 Sum_probs=39.5
Q ss_pred cCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 27 ~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
++++++++++++.+|++.|.+++.+.+||+|++ +++|++|..|
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~----~~~G~i~~~~ 43 (113)
T cd04622 1 RDVVTVSPDDTIREAARLMREHDVGALPVCEND----RLVGIVTDRD 43 (113)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeCC----EEEEEEEhHH
Confidence 467899999999999999999999999999875 9999999994
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.4e-06 Score=76.46 Aligned_cols=44 Identities=30% Similarity=0.627 Sum_probs=39.8
Q ss_pred cCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEecccc
Q psy1056 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74 (590)
Q Consensus 27 ~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Di 74 (590)
.+++++++++|+.+|++.|.+++++.+||+|++ +++|++|..|+
T Consensus 1 ~~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~~----~~~G~v~~~~l 44 (121)
T cd04633 1 KPVITVSPDDRVSHARRLMLDHDISRLPVIEGG----KLVGIVTEKDI 44 (121)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCeeEEEECC----EEEEEEchHHH
Confidence 367899999999999999999999999999875 99999999943
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.3e-06 Score=87.15 Aligned_cols=72 Identities=28% Similarity=0.511 Sum_probs=66.8
Q ss_pred cchHHHHHHHHHcC--CcEEEEcCCCCchHHHHHHHHHhhhcCCCcccccccccchHHHHHHHHHhcccccccc
Q psy1056 136 EADKYRLKLLSQAG--VDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGLRVGS 207 (590)
Q Consensus 136 ~d~~~~~~~l~~~~--~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~im~~~~~~~~~~~~a~~~m~~~~~v~~ 207 (590)
+++++++..|++++ +|+|++|++|||++.++++++++++.+|...++..|+.+.+..+++++..||+++||+
T Consensus 106 ~~d~er~~~L~~a~~~~d~iviD~AhGhs~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aGAD~ikVgi 179 (343)
T TIGR01305 106 DNDLEKMTSILEAVPQLKFICLDVANGYSEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELILSGADIVKVGI 179 (343)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHhhCCCCeEEEecccCHHHHHHHHHcCCCEEEEcc
Confidence 35788999999885 9999999999999999999999999899888999999999999999999999999986
|
A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences. |
| >cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.4e-06 Score=73.78 Aligned_cols=43 Identities=37% Similarity=0.692 Sum_probs=39.3
Q ss_pred cCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 27 ~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
+++.+++++.|+.+|.+.|.+++++.+||+|++ +++|+++..|
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~~----~~~G~v~~~~ 43 (111)
T cd04800 1 RPPVTCSPDTTIREAARLMTEHRVSSLLVVDDG----RLVGIVTDRD 43 (111)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCeEEEEECC----EEEEEEEhHH
Confidence 367889999999999999999999999999875 9999999994
|
Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa |
| >cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.7e-06 Score=73.23 Aligned_cols=46 Identities=17% Similarity=0.312 Sum_probs=38.8
Q ss_pred CCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 28 DPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 28 ~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
...++++++|+.++.+.|.+++.+.+||+|+++..++++|++|.+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~d 48 (105)
T cd04591 3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQ 48 (105)
T ss_pred ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHH
Confidence 4567999999999999999999999999998200179999999993
|
These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS |
| >cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.2e-06 Score=75.70 Aligned_cols=46 Identities=33% Similarity=0.668 Sum_probs=40.2
Q ss_pred cCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEecccc
Q psy1056 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74 (590)
Q Consensus 27 ~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Di 74 (590)
+++.+++++.|+.+|+++|.++++..+||+|++ .|+++|+++..|+
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~--~~~~~G~v~~~dl 46 (125)
T cd04631 1 KDVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEG--TGKLVGIITATDI 46 (125)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCcccceeEeCC--CCEEEEEEEHHHH
Confidence 357789999999999999999999999999873 2599999999953
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.5e-06 Score=73.42 Aligned_cols=42 Identities=29% Similarity=0.499 Sum_probs=38.4
Q ss_pred CCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 28 DPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 28 ~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
++.++++++|+.+|++.|.+++.+.+||+|++ +++|++|.+|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~----~~~G~v~~~~ 43 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDDG----RPLGIVTERD 43 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeCC----EEEEEEeHHH
Confidence 56789999999999999999999999999875 9999999994
|
PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB |
| >cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=98.30 E-value=4.4e-06 Score=73.45 Aligned_cols=42 Identities=26% Similarity=0.483 Sum_probs=38.9
Q ss_pred CCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 28 DPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 28 ~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
+++++++++++.+|++.|.+++++++||+|++ +++|++|..|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~----~~~G~v~~~~ 43 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVEDN----ELVGVISDRD 43 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeCC----eEEEEEEHHH
Confidence 57789999999999999999999999999975 9999999994
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >COG4109 Predicted transcriptional regulator containing CBS domains [Transcription] | Back alignment and domain information |
|---|
Probab=98.30 E-value=2e-06 Score=86.69 Aligned_cols=50 Identities=28% Similarity=0.476 Sum_probs=45.3
Q ss_pred Cccc--cCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccccccc
Q psy1056 23 HGFI--RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDFL 77 (590)
Q Consensus 23 ~~m~--~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Did~l 77 (590)
++|. .+.-.+.+++++.+=.++-.+.+.+++||+|.. .+++|++|.+ |++
T Consensus 192 di~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~---~kvvGvVt~r--Dv~ 243 (432)
T COG4109 192 DIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRS---MKVVGVVTMR--DVL 243 (432)
T ss_pred HhccccccceeccccccHHHHHHHHHHcCCCccceeccc---ceEEEEEEeh--hhh
Confidence 3488 788899999999999999999999999999987 7999999999 554
|
|
| >PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.5e-05 Score=80.48 Aligned_cols=176 Identities=16% Similarity=0.109 Sum_probs=103.3
Q ss_pred CHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCCCCCCcccCCceEEeEeeccchhHHHHHHHHHHcCCcEEE
Q psy1056 268 SLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVVI 347 (590)
Q Consensus 268 ~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~gad~i~ 347 (590)
++.+..+.+.+.+.+.+.++|=++.-.+-=...++++..... ..-++.++. .-...+.+..+.+.|++.+.
T Consensus 31 dp~~~a~~~~~~g~~~l~i~Dl~~~~~~~~~n~~~i~~i~~~-----~~~pv~~gG----Gi~s~~d~~~l~~~G~~~vv 101 (258)
T PRK01033 31 DPINAVRIFNEKEVDELIVLDIDASKRGSEPNYELIENLASE-----CFMPLCYGG----GIKTLEQAKKIFSLGVEKVS 101 (258)
T ss_pred CHHHHHHHHHHcCCCEEEEEECCCCcCCCcccHHHHHHHHHh-----CCCCEEECC----CCCCHHHHHHHHHCCCCEEE
Confidence 667888899999999999997432211111222333332211 111222222 22334566677788999998
Q ss_pred EecCCCchhhHHHHHHHHHHhCCC--ceEEe--c------------------cccCcHHHHHHHHCCCCEEEEccccccc
Q psy1056 348 LDSSQGNSIYQIEMIKFIKKEYPD--MQVIG--G------------------NVLFGYQPRATLLNFIYQIEMIKFIKKE 405 (590)
Q Consensus 348 V~~~~G~~~~~l~~i~~i~~~~~~--vpvi~--g------------------~v~s~~~a~~l~~~Gvd~i~v~~~~~~~ 405 (590)
+.+.--.. .+.++.+.+.+++ +++-+ + +....+-++++.++|++.+.+ +.+.
T Consensus 102 igs~~~~~---~~~~~~~~~~~~~~~i~vsiD~k~g~~~~~~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~---~~i~ 175 (258)
T PRK01033 102 INTAALED---PDLITEAAERFGSQSVVVSIDVKKNLGGKFDVYTHNGTKKLKKDPLELAKEYEALGAGEILL---NSID 175 (258)
T ss_pred EChHHhcC---HHHHHHHHHHhCCCcEEEEEEEecCCCCcEEEEEcCCeecCCCCHHHHHHHHHHcCCCEEEE---EccC
Confidence 86532111 2445555555531 21111 1 111235667888999998844 2222
Q ss_pred CCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHH-HcCCCEEEECccc
Q psy1056 406 YPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKAL-ALGASTAMMGSLL 462 (590)
Q Consensus 406 ~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kal-alGA~~v~~g~~l 462 (590)
.+| +.-|.....+.++.+ ..++|+|++|||++..|+.+++ ..|+++|.+|++|
T Consensus 176 ~~G-~~~G~d~~~i~~~~~---~~~ipvIasGGv~s~eD~~~l~~~~GvdgVivg~a~ 229 (258)
T PRK01033 176 RDG-TMKGYDLELLKSFRN---ALKIPLIALGGAGSLDDIVEAILNLGADAAAAGSLF 229 (258)
T ss_pred CCC-CcCCCCHHHHHHHHh---hCCCCEEEeCCCCCHHHHHHHHHHCCCCEEEEccee
Confidence 111 111223333444443 3569999999999999999999 8999999999999
|
|
| >TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2 | Back alignment and domain information |
|---|
Probab=98.29 E-value=4.5e-06 Score=87.26 Aligned_cols=132 Identities=14% Similarity=0.080 Sum_probs=81.0
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCC---------chhhHHHHHHHHHHhCC------CceEEecccc------CcHHHHHH
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQG---------NSIYQIEMIKFIKKEYP------DMQVIGGNVL------FGYQPRAT 388 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G---------~~~~~l~~i~~i~~~~~------~vpvi~g~v~------s~~~a~~l 388 (590)
++.+.++.+.+ .+|++.++.+-. +.+.+.+.++.+++... .+|+++|=-. -.+-|+.+
T Consensus 155 dy~~~~~~~~~-~ad~iElNlScPn~~~~~~~~~~~~~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP~~~~~~i~~ia~~~ 233 (335)
T TIGR01036 155 DYAACLRKLGP-LADYLVVNVSSPNTPGLRDLQYKAELRDLLTAVKQEQDGLRRVHRVPVLVKIAPDLTESDLEDIADSL 233 (335)
T ss_pred HHHHHHHHHhh-hCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHH
Confidence 33444444433 499999986421 12334566677665541 3899987443 24456778
Q ss_pred HHCCCCEEEEcccccc-----------cCCCccccccchhHHHHHHHHHhcC--CCcEEecCCCCCHHHHHHHHHcCCCE
Q psy1056 389 LLNFIYQIEMIKFIKK-----------EYPDMQVIGRNGTAVYRVAEYASRR--GVPVIADGGVQSVGHVMKALALGAST 455 (590)
Q Consensus 389 ~~~Gvd~i~v~~~~~~-----------~~~~~~~~g~~~~~l~~~~~~~~~~--~v~iia~GGi~~~~di~kalalGA~~ 455 (590)
.++|+|+|.+.+.... ...|+.|-.+.+.++..+....+.. ++|||+.|||.|+.|+.+.+.+||++
T Consensus 234 ~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~~ipiig~GGI~~~~da~e~l~aGA~~ 313 (335)
T TIGR01036 234 VELGIDGVIATNTTVSRSLVQGPKNSDETGGLSGKPLQDKSTEIIRRLYAELQGRLPIIGVGGISSAQDALEKIRAGASL 313 (335)
T ss_pred HHhCCcEEEEECCCCccccccCccccCCCCcccCHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCcH
Confidence 8899999965221110 0001111111222343444443333 59999999999999999999999999
Q ss_pred EEECccc
Q psy1056 456 AMMGSLL 462 (590)
Q Consensus 456 v~~g~~l 462 (590)
|++|+.+
T Consensus 314 Vqv~ta~ 320 (335)
T TIGR01036 314 LQIYSGF 320 (335)
T ss_pred HHhhHHH
Confidence 9999987
|
The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region. |
| >cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.6e-06 Score=72.71 Aligned_cols=43 Identities=30% Similarity=0.511 Sum_probs=38.9
Q ss_pred cCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 27 ~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
++++++++++|+.+|++.|.+++...+||+|++ +++|++|.+|
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~----~~~G~v~~~~ 43 (111)
T cd04589 1 RPPLIVDASTSIRDAARLMREHGADALLVRDGD----PRLGIVTRTD 43 (111)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCEEEEecCC----eEEEEEEHHH
Confidence 357889999999999999999999999999875 8999999994
|
Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or |
| >cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria | Back alignment and domain information |
|---|
Probab=98.29 E-value=2e-06 Score=75.41 Aligned_cols=43 Identities=40% Similarity=0.719 Sum_probs=39.9
Q ss_pred CCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 28 DPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 28 ~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
++.++++++++.+|++.|.+.+++.+||+|++ ++++|+++..|
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~---~~~~G~v~~~~ 44 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDEE---GRLVGIVTDRD 44 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECCC---CcEEEEEEHHH
Confidence 57789999999999999999999999999986 79999999994
|
Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in |
| >cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.3e-05 Score=83.82 Aligned_cols=133 Identities=18% Similarity=0.175 Sum_probs=87.6
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCc------------------------hhhHHHHHHHHHHhC-CCceEEeccc-----
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGN------------------------SIYQIEMIKFIKKEY-PDMQVIGGNV----- 379 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~------------------------~~~~l~~i~~i~~~~-~~vpvi~g~v----- 379 (590)
+..+.++.+.++|+|.+.|+..+|+ .+.+.+.++.+++.+ ++.|+.++--
T Consensus 142 ~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~ 221 (327)
T cd02803 142 DFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFV 221 (327)
T ss_pred HHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccC
Confidence 4455778888999999999876542 133468889999887 4678776422
Q ss_pred ---cCcHH----HHHHHHCCCCEEEEcccccccCCC-cc--ccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHH
Q psy1056 380 ---LFGYQ----PRATLLNFIYQIEMIKFIKKEYPD-MQ--VIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKAL 449 (590)
Q Consensus 380 ---~s~~~----a~~l~~~Gvd~i~v~~~~~~~~~~-~~--~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kal 449 (590)
.+.++ ++.|.++|+|+|.|+......... .. .++ ....+..++...+..++||++.|||+++.++.+++
T Consensus 222 ~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~-~~~~~~~~~~ir~~~~iPVi~~Ggi~t~~~a~~~l 300 (327)
T cd02803 222 PGGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVP-EGYFLELAEKIKKAVKIPVIAVGGIRDPEVAEEIL 300 (327)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCC-cchhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHH
Confidence 13333 677888999999874322111000 00 000 11112222223333469999999999999999999
Q ss_pred Hc-CCCEEEECcccc
Q psy1056 450 AL-GASTAMMGSLLA 463 (590)
Q Consensus 450 al-GA~~v~~g~~l~ 463 (590)
+. |||+|++|++|.
T Consensus 301 ~~g~aD~V~igR~~l 315 (327)
T cd02803 301 AEGKADLVALGRALL 315 (327)
T ss_pred HCCCCCeeeecHHHH
Confidence 99 799999999885
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.7e-05 Score=78.73 Aligned_cols=179 Identities=21% Similarity=0.196 Sum_probs=105.0
Q ss_pred CCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCCCCCCcccCCceEEeEeeccchhHHHHHHHHHHcCCcE
Q psy1056 266 GISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDV 345 (590)
Q Consensus 266 ~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~gad~ 345 (590)
..++.++.+.+.+.+.+.+-|+|-++.+-|--...++++..... ..-++.++..+ ...+.++.+.+.|++.
T Consensus 29 ~~~~~~~a~~~~~~g~~~i~v~dld~~~~g~~~~~~~i~~i~~~-----~~~pv~~~GGI----~~~ed~~~~~~~Ga~~ 99 (233)
T PRK00748 29 SDDPVAQAKAWEDQGAKWLHLVDLDGAKAGKPVNLELIEAIVKA-----VDIPVQVGGGI----RSLETVEALLDAGVSR 99 (233)
T ss_pred cCCHHHHHHHHHHcCCCEEEEEeCCccccCCcccHHHHHHHHHH-----CCCCEEEcCCc----CCHHHHHHHHHcCCCE
Confidence 34677888889999999999999766554422222233322111 11233333333 2345667788889999
Q ss_pred EEEecCCCchhhHHHHHHHHHHhCCC-ceEE--ec-------c------ccCcHHHHHHHHCCCCEEEEcccccccCCCc
Q psy1056 346 VILDSSQGNSIYQIEMIKFIKKEYPD-MQVI--GG-------N------VLFGYQPRATLLNFIYQIEMIKFIKKEYPDM 409 (590)
Q Consensus 346 i~V~~~~G~~~~~l~~i~~i~~~~~~-vpvi--~g-------~------v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~ 409 (590)
+.+...--.. .+.++.+.+.+++ +.+- ++ + ....+-++.+.++|++.|.+. ..++. -
T Consensus 100 vilg~~~l~~---~~~l~ei~~~~~~~i~vsid~k~~~v~~~g~~~~~~~~~~e~~~~~~~~g~~~ii~~-~~~~~---g 172 (233)
T PRK00748 100 VIIGTAAVKN---PELVKEACKKFPGKIVVGLDARDGKVATDGWLETSGVTAEDLAKRFEDAGVKAIIYT-DISRD---G 172 (233)
T ss_pred EEECchHHhC---HHHHHHHHHHhCCCceeeeeccCCEEEEccCeecCCCCHHHHHHHHHhcCCCEEEEe-eecCc---C
Confidence 8775532111 1234444444432 1111 11 0 012466788888999977441 11121 1
Q ss_pred cccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcC-CCEEEECcccc
Q psy1056 410 QVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALG-ASTAMMGSLLA 463 (590)
Q Consensus 410 ~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalG-A~~v~~g~~l~ 463 (590)
+..|.....+.++. +..++|+|++|||++..|+.+++..| |++|++|+.|.
T Consensus 173 ~~~G~d~~~i~~l~---~~~~ipvia~GGi~~~~di~~~~~~g~~~gv~vg~a~~ 224 (233)
T PRK00748 173 TLSGPNVEATRELA---AAVPIPVIASGGVSSLDDIKALKGLGAVEGVIVGRALY 224 (233)
T ss_pred CcCCCCHHHHHHHH---HhCCCCEEEeCCCCCHHHHHHHHHcCCccEEEEEHHHH
Confidence 11232233333443 33469999999999999999999999 99999999884
|
|
| >cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.1e-06 Score=72.41 Aligned_cols=39 Identities=15% Similarity=0.290 Sum_probs=36.4
Q ss_pred EEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEecc
Q psy1056 30 VCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSR 72 (590)
Q Consensus 30 vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~ 72 (590)
+++++++|+.+|++.|.+.++..+||+|++ +++|+++.+
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~----~~~G~v~~~ 42 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDYN----KFLGAVYLK 42 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEECC----EEEEEEEHH
Confidence 479999999999999999999999999875 999999999
|
These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do |
| >cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.8e-06 Score=73.44 Aligned_cols=43 Identities=26% Similarity=0.464 Sum_probs=39.2
Q ss_pred cCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 27 ~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
+++.++++++|+.+|++.|.+++.+.+||+|++ +++|++|..|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----~~~G~v~~~d 43 (112)
T cd04802 1 KNVITVDPDTTVYEAANIMTENNIGRLIVVDNE----KPVGIITERD 43 (112)
T ss_pred CCcEEECCCCCHHHHHHHHHHCCCCEEEEEECC----EEEEEEEHHH
Confidence 357789999999999999999999999999975 9999999994
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.6e-05 Score=79.00 Aligned_cols=176 Identities=19% Similarity=0.146 Sum_probs=102.6
Q ss_pred CHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCCCCCCcccCCceEEeEeeccchhHHHHHHHHHHcCCcEEE
Q psy1056 268 SLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVVI 347 (590)
Q Consensus 268 ~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~gad~i~ 347 (590)
+..++++.+.+.+.+.+.++|=++.-.+-=...++++.... ....++.++..+ ...+.+..+.+.|++.+.
T Consensus 31 dp~~~a~~~~~~g~~~i~i~dl~~~~~~~~~n~~~~~~i~~-----~~~~pv~~~ggi----~~~~d~~~~~~~G~~~vi 101 (232)
T TIGR03572 31 DPVNAARIYNAKGADELIVLDIDASKRGREPLFELISNLAE-----ECFMPLTVGGGI----RSLEDAKKLLSLGADKVS 101 (232)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCHHHHHHHHH-----hCCCCEEEECCC----CCHHHHHHHHHcCCCEEE
Confidence 67788888999999999999854321110011122222111 112233333333 234555667788999988
Q ss_pred EecCCCchhhHHHHHHHHHHhCCC--ceEE--ecc-------------------ccCcHHHHHHHHCCCCEEEEcccccc
Q psy1056 348 LDSSQGNSIYQIEMIKFIKKEYPD--MQVI--GGN-------------------VLFGYQPRATLLNFIYQIEMIKFIKK 404 (590)
Q Consensus 348 V~~~~G~~~~~l~~i~~i~~~~~~--vpvi--~g~-------------------v~s~~~a~~l~~~Gvd~i~v~~~~~~ 404 (590)
+...--.. .+.++.+.+.++. +++- ++. ....+.++++.++|+|+|.++-- ++
T Consensus 102 lg~~~l~~---~~~~~~~~~~~~~~~i~vsld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~G~d~i~i~~i-~~ 177 (232)
T TIGR03572 102 INTAALEN---PDLIEEAARRFGSQCVVVSIDVKKELDGSDYKVYSDNGRRATGRDPVEWAREAEQLGAGEILLNSI-DR 177 (232)
T ss_pred EChhHhcC---HHHHHHHHHHcCCceEEEEEEeccCCCCCcEEEEECCCcccCCCCHHHHHHHHHHcCCCEEEEeCC-Cc
Confidence 76532111 2455555666632 2211 111 11246778899999999965311 11
Q ss_pred cCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHH-HHHcCCCEEEECccc
Q psy1056 405 EYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMK-ALALGASTAMMGSLL 462 (590)
Q Consensus 405 ~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~k-alalGA~~v~~g~~l 462 (590)
. -+..|.....+.++ +...++|+|++|||++..|+.+ ....|||+|++|++|
T Consensus 178 ~---g~~~g~~~~~~~~i---~~~~~ipvia~GGi~s~~di~~~l~~~gadgV~vg~a~ 230 (232)
T TIGR03572 178 D---GTMKGYDLELIKTV---SDAVSIPVIALGGAGSLDDLVEVALEAGASAVAAASLF 230 (232)
T ss_pred c---CCcCCCCHHHHHHH---HhhCCCCEEEECCCCCHHHHHHHHHHcCCCEEEEehhh
Confidence 1 11123333333333 3344799999999999999999 667999999999987
|
This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr |
| >cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.8e-06 Score=72.92 Aligned_cols=42 Identities=26% Similarity=0.628 Sum_probs=38.8
Q ss_pred CCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 28 DPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 28 ~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
+++++++++|+.+|++.|.+++++.+||+|++ +++|++|.+|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~----~~~G~v~~~d 43 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDDG----RVVGSIDESD 43 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeCC----eeEEEEeHHH
Confidence 56789999999999999999999999999875 9999999994
|
The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote |
| >PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway | Back alignment and domain information |
|---|
Probab=98.26 E-value=3.6e-06 Score=86.71 Aligned_cols=131 Identities=21% Similarity=0.141 Sum_probs=79.3
Q ss_pred hHHHHHHHHHHcCCcEEEEecCC----Cc-----h-hhHHHHHHHHHHhCCCceEEecccc---Cc---HHHHHHHHCCC
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQ----GN-----S-IYQIEMIKFIKKEYPDMQVIGGNVL---FG---YQPRATLLNFI 393 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~----G~-----~-~~~l~~i~~i~~~~~~vpvi~g~v~---s~---~~a~~l~~~Gv 393 (590)
++.+.++.+. .++|++.++.+- +. . ......++.+++.. ++|+++|=-. .. +.+..+.+.|+
T Consensus 113 d~~~~a~~~~-~~ad~lElN~ScPn~~~~~~~~~~~~~~~~i~~~v~~~~-~~Pv~vKL~p~~~~~~~~~~~~~~~~~g~ 190 (295)
T PF01180_consen 113 DWAELAKRLE-AGADALELNLSCPNVPGGRPFGQDPELVAEIVRAVREAV-DIPVFVKLSPNFTDIEPFAIAAELAADGA 190 (295)
T ss_dssp HHHHHHHHHH-HHCSEEEEESTSTTSTTSGGGGGHHHHHHHHHHHHHHHH-SSEEEEEE-STSSCHHHHHHHHHHHTHTE
T ss_pred HHHHHHHHhc-CcCCceEEEeeccCCCCccccccCHHHHHHHHHHHHhcc-CCCEEEEecCCCCchHHHHHHHHhhccce
Confidence 4444555554 889999998642 11 1 11234455555544 7899987444 32 33555667899
Q ss_pred CEEEE----------cccccccCCC-----ccccccchhHHHHHHHHHhcCC--CcEEecCCCCCHHHHHHHHHcCCCEE
Q psy1056 394 YQIEM----------IKFIKKEYPD-----MQVIGRNGTAVYRVAEYASRRG--VPVIADGGVQSVGHVMKALALGASTA 456 (590)
Q Consensus 394 d~i~v----------~~~~~~~~~~-----~~~~g~~~~~l~~~~~~~~~~~--v~iia~GGi~~~~di~kalalGA~~v 456 (590)
++|.. .+++.+...+ +.|-.+.+.++..+++..+..+ +|||+.|||.|+.|+.+.|.+||++|
T Consensus 191 ~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG~~i~p~aL~~V~~~~~~~~~~i~Iig~GGI~s~~da~e~l~aGA~~V 270 (295)
T PF01180_consen 191 DGIVAINTFGQGDAIDLETRRPVLGNGFGGLSGPAIRPIALRWVRELRKALGQDIPIIGVGGIHSGEDAIEFLMAGASAV 270 (295)
T ss_dssp CEEEE---EEEEE-EETTTTEESSSGGEEEEEEGGGHHHHHHHHHHHHHHTTTSSEEEEESS--SHHHHHHHHHHTESEE
T ss_pred eEEEEecCccCcccccchhcceeeccccCCcCchhhhhHHHHHHHHHHhccccceEEEEeCCcCCHHHHHHHHHhCCCHh
Confidence 99964 1111111000 1111112334555555554444 99999999999999999999999999
Q ss_pred EECccc
Q psy1056 457 MMGSLL 462 (590)
Q Consensus 457 ~~g~~l 462 (590)
++++.+
T Consensus 271 qv~Sal 276 (295)
T PF01180_consen 271 QVCSAL 276 (295)
T ss_dssp EESHHH
T ss_pred eechhh
Confidence 999988
|
DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A .... |
| >PRK10550 tRNA-dihydrouridine synthase C; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.3e-05 Score=81.07 Aligned_cols=130 Identities=16% Similarity=0.066 Sum_probs=87.2
Q ss_pred hHHHHHHHHHHcCCcEEEEecCC--------C-------chhhHHHHHHHHHHhCC-CceEEecc---cc----CcHHHH
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQ--------G-------NSIYQIEMIKFIKKEYP-DMQVIGGN---VL----FGYQPR 386 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~--------G-------~~~~~l~~i~~i~~~~~-~vpvi~g~---v~----s~~~a~ 386 (590)
...+.+..+.+.|++.|-+|... | +...+.+.++.+++..+ ++||.+|- .. ..+-++
T Consensus 76 ~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~~~~~~~~~a~ 155 (312)
T PRK10550 76 WLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWDSGERKFEIAD 155 (312)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCCCchHHHHHHH
Confidence 34456777788899999988532 2 22445677888888875 58998872 21 245667
Q ss_pred HHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHH-cCCCEEEECccccC
Q psy1056 387 ATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALA-LGASTAMMGSLLAG 464 (590)
Q Consensus 387 ~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kala-lGA~~v~~g~~l~~ 464 (590)
.+.++|+|+|.|...+..+ ++.+-......+.++. +..++|||+.|||.|+.|+.+++. -|||+||+|+.+.+
T Consensus 156 ~l~~~Gvd~i~Vh~Rt~~~--~y~g~~~~~~~i~~ik---~~~~iPVi~nGdI~t~~da~~~l~~~g~DgVmiGRg~l~ 229 (312)
T PRK10550 156 AVQQAGATELVVHGRTKED--GYRAEHINWQAIGEIR---QRLTIPVIANGEIWDWQSAQQCMAITGCDAVMIGRGALN 229 (312)
T ss_pred HHHhcCCCEEEECCCCCcc--CCCCCcccHHHHHHHH---hhcCCcEEEeCCcCCHHHHHHHHhccCCCEEEEcHHhHh
Confidence 7888999999774332211 1111000122233333 335699999999999999999995 68999999987754
|
|
| >PRK10415 tRNA-dihydrouridine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.5e-05 Score=81.36 Aligned_cols=127 Identities=14% Similarity=0.141 Sum_probs=84.0
Q ss_pred hHHHHHHHHHHcCCcEEEEecC--C--------C-----chhhHHHHHHHHHHhCCCceEEeccc----c----CcHHHH
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSS--Q--------G-----NSIYQIEMIKFIKKEYPDMQVIGGNV----L----FGYQPR 386 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~--~--------G-----~~~~~l~~i~~i~~~~~~vpvi~g~v----~----s~~~a~ 386 (590)
...+.+..+.+.|++.+-+|.. + | +++.+.+.++.+++.. ++|+.+|-- . ..+-++
T Consensus 78 ~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~-d~pv~vKiR~G~~~~~~~~~~~a~ 156 (321)
T PRK10415 78 EMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAV-DVPVTLKIRTGWAPEHRNCVEIAQ 156 (321)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhc-CCceEEEEEccccCCcchHHHHHH
Confidence 3345566667789999998852 1 1 1344567788888776 677776431 1 235567
Q ss_pred HHHHCCCCEEEEcccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHH-cCCCEEEECccccC
Q psy1056 387 ATLLNFIYQIEMIKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALA-LGASTAMMGSLLAG 464 (590)
Q Consensus 387 ~l~~~Gvd~i~v~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kala-lGA~~v~~g~~l~~ 464 (590)
.+.++|+|+|.|...+... .+. |. ....+.++. +..++|||+.|||.|+.|+.+++. .|||+||+|+.+.+
T Consensus 157 ~le~~G~d~i~vh~rt~~~--~~~--G~a~~~~i~~ik---~~~~iPVI~nGgI~s~~da~~~l~~~gadgVmiGR~~l~ 229 (321)
T PRK10415 157 LAEDCGIQALTIHGRTRAC--LFN--GEAEYDSIRAVK---QKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQG 229 (321)
T ss_pred HHHHhCCCEEEEecCcccc--ccC--CCcChHHHHHHH---HhcCCcEEEeCCCCCHHHHHHHHhccCCCEEEEChHhhc
Confidence 7889999999663222111 011 21 222333333 345799999999999999999997 69999999987753
|
|
| >cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=98.24 E-value=6.3e-06 Score=75.18 Aligned_cols=44 Identities=27% Similarity=0.632 Sum_probs=40.2
Q ss_pred cCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEecccc
Q psy1056 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74 (590)
Q Consensus 27 ~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Di 74 (590)
++++++++++|+.++++.|.+++++.+||+|++ +++|++|..|+
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~----~~~G~v~~~dl 44 (143)
T cd04634 1 KNPITCNADDTISDAARLLRENKISGAPVLDGG----KLVGIVSESDI 44 (143)
T ss_pred CCcEEecCCCCHHHHHHHHHHcCCCcceEeECC----eEEEEecHHHH
Confidence 367899999999999999999999999999874 99999999964
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=98.24 E-value=4.9e-06 Score=71.24 Aligned_cols=42 Identities=29% Similarity=0.489 Sum_probs=38.8
Q ss_pred CCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEecc
Q psy1056 28 DPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSR 72 (590)
Q Consensus 28 ~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~ 72 (590)
+..++++++|+.++++.|.+++++.+||+|++ ++++|+++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~g~v~~~ 43 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKS---GELVGIITRK 43 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCC---CcEEEEEEHH
Confidence 46789999999999999999999999999986 7999999999
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.3e-05 Score=76.76 Aligned_cols=133 Identities=17% Similarity=0.211 Sum_probs=91.5
Q ss_pred hhHHHHHHHHHHcCCcEEEE-e--cCCCchhhHHHHHHHHHHhCCCceEEec-cccCcHHHHHHHHCCCCEEEE------
Q psy1056 329 EADKNRLKLLSQAGVDVVIL-D--SSQGNSIYQIEMIKFIKKEYPDMQVIGG-NVLFGYQPRATLLNFIYQIEM------ 398 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V-~--~~~G~~~~~l~~i~~i~~~~~~vpvi~g-~v~s~~~a~~l~~~Gvd~i~v------ 398 (590)
.+..+.++.-.+.|+|-+++ | .+...+.-.++.++...+.. .+|+.+| ++.+.++++++..+|||=|.+
T Consensus 30 GDpVelA~~Y~e~GADElvFlDItAs~~gr~~~~~vv~r~A~~v-fiPltVGGGI~s~eD~~~ll~aGADKVSINsaAv~ 108 (256)
T COG0107 30 GDPVELAKRYNEEGADELVFLDITASSEGRETMLDVVERVAEQV-FIPLTVGGGIRSVEDARKLLRAGADKVSINSAAVK 108 (256)
T ss_pred CChHHHHHHHHHcCCCeEEEEecccccccchhHHHHHHHHHhhc-eeeeEecCCcCCHHHHHHHHHcCCCeeeeChhHhc
Confidence 35567888888999996554 3 23333455788888888877 6888865 556999999999999998887
Q ss_pred -------------------cccccccCCC--------------cccc-------------------------cc-chhHH
Q psy1056 399 -------------------IKFIKKEYPD--------------MQVI-------------------------GR-NGTAV 419 (590)
Q Consensus 399 -------------------~~~~~~~~~~--------------~~~~-------------------------g~-~~~~l 419 (590)
++...+..+| .++| |. .---+
T Consensus 109 ~p~lI~~~a~~FGsQciVvaIDakr~~~g~~~~~~v~~~gGr~~t~~d~~~Wa~~~e~~GAGEIlLtsmD~DGtk~GyDl 188 (256)
T COG0107 109 DPELITEAADRFGSQCIVVAIDAKRVPDGENGWYEVFTHGGREDTGLDAVEWAKEVEELGAGEILLTSMDRDGTKAGYDL 188 (256)
T ss_pred ChHHHHHHHHHhCCceEEEEEEeeeccCCCCCcEEEEecCCCcCCCcCHHHHHHHHHHcCCceEEEeeecccccccCcCH
Confidence 2222221100 1111 01 00012
Q ss_pred HHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcC-CCEEEECccc
Q psy1056 420 YRVAEYASRRGVPVIADGGVQSVGHVMKALALG-ASTAMMGSLL 462 (590)
Q Consensus 420 ~~~~~~~~~~~v~iia~GGi~~~~di~kalalG-A~~v~~g~~l 462 (590)
..++..+...++|+|||||..++.|...|+..| ||++.+++.|
T Consensus 189 ~l~~~v~~~v~iPvIASGGaG~~ehf~eaf~~~~adAaLAAsiF 232 (256)
T COG0107 189 ELTRAVREAVNIPVIASGGAGKPEHFVEAFTEGKADAALAASIF 232 (256)
T ss_pred HHHHHHHHhCCCCEEecCCCCcHHHHHHHHHhcCccHHHhhhhh
Confidence 223334445579999999999999999999999 9999888888
|
|
| >PRK06843 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.23 E-value=8.8e-06 Score=86.08 Aligned_cols=72 Identities=40% Similarity=0.669 Sum_probs=65.5
Q ss_pred cchHHHHHHHHHcCCcEEEEcCCCCchHHHHHHHHHhhhcCCCcccccccccchHHHHHHHHHhcccccccc
Q psy1056 136 EADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGLRVGS 207 (590)
Q Consensus 136 ~d~~~~~~~l~~~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~im~~~~~~~~~~~~a~~~m~~~~~v~~ 207 (590)
++..+++..++++|+|+|++|.+|++.....+.+++++..+|..++|-.++.+.+....+.+..+|+|+||+
T Consensus 152 ~~~~~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~aGaD~I~vG~ 223 (404)
T PRK06843 152 IDTIERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLKVGI 223 (404)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHcCCCEEEECC
Confidence 346789999999999999999999999999999999999899888889999998888999999999998874
|
|
| >PRK14024 phosphoribosyl isomerase A; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.1e-05 Score=78.56 Aligned_cols=178 Identities=16% Similarity=0.129 Sum_probs=102.4
Q ss_pred CHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCCCCCCcccCCceEEeEeeccchhHHHHHHHHHHcCCcEEE
Q psy1056 268 SLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVVI 347 (590)
Q Consensus 268 ~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~gad~i~ 347 (590)
...+..+.+.+++.+.+-|+|=++.. |-=...++++..... ..-++.++..+ ...+.++.+++.|++-+.
T Consensus 33 dp~~~a~~~~~~g~~~l~ivDLd~~~-g~~~n~~~i~~i~~~-----~~~pv~vgGGi----rs~edv~~~l~~Ga~kvv 102 (241)
T PRK14024 33 SPLDAALAWQRDGAEWIHLVDLDAAF-GRGSNRELLAEVVGK-----LDVKVELSGGI----RDDESLEAALATGCARVN 102 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEeccccC-CCCccHHHHHHHHHH-----cCCCEEEcCCC----CCHHHHHHHHHCCCCEEE
Confidence 34456677888999999999865431 322222333332211 11223333333 345778888999999988
Q ss_pred EecCC-CchhhHHHHHHHHHHhC-CCceEEeccc---------cC-cHHHHHHHHCCCCEEEEcccccccCCCccccccc
Q psy1056 348 LDSSQ-GNSIYQIEMIKFIKKEY-PDMQVIGGNV---------LF-GYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRN 415 (590)
Q Consensus 348 V~~~~-G~~~~~l~~i~~i~~~~-~~vpvi~g~v---------~s-~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~ 415 (590)
+.+.- .+++.+.+..+.+.++. ..+++--+.+ .+ .+-++.+.++|++.+.+ +.+..++ +.-|..
T Consensus 103 iGs~~l~~p~l~~~i~~~~~~~i~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~~~G~~~iiv---~~~~~~g-~~~G~d 178 (241)
T PRK14024 103 IGTAALENPEWCARVIAEHGDRVAVGLDVRGHTLAARGWTRDGGDLWEVLERLDSAGCSRYVV---TDVTKDG-TLTGPN 178 (241)
T ss_pred ECchHhCCHHHHHHHHHHhhhhEEEEEEEeccEeccCCeeecCccHHHHHHHHHhcCCCEEEE---EeecCCC-CccCCC
Confidence 76543 23333344444443321 0112210111 11 35678889999999944 2222111 011222
Q ss_pred hhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHc---CCCEEEECccc
Q psy1056 416 GTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALAL---GASTAMMGSLL 462 (590)
Q Consensus 416 ~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalal---GA~~v~~g~~l 462 (590)
...+.++. ...++|+|++|||++..|+.+++.+ ||++||+|+.+
T Consensus 179 ~~~i~~i~---~~~~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra~ 225 (241)
T PRK14024 179 LELLREVC---ARTDAPVVASGGVSSLDDLRALAELVPLGVEGAIVGKAL 225 (241)
T ss_pred HHHHHHHH---hhCCCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHHH
Confidence 23333333 3346999999999999999988765 99999999988
|
|
| >TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.4e-05 Score=78.78 Aligned_cols=177 Identities=18% Similarity=0.141 Sum_probs=104.0
Q ss_pred CCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCCCCCCcccCCceEEeEeeccchhHHHHHHHHHHcCCcEE
Q psy1056 267 ISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVV 346 (590)
Q Consensus 267 ~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~gad~i 346 (590)
.++.+..+.+.+.+.+.+-++|-++.-.+-=...++++.... ...-++.++..+. ..+.++.+...|++.+
T Consensus 30 ~dp~~~a~~~~~~G~~~l~v~Dl~~~~~~~~~n~~~i~~i~~-----~~~~pv~~~GGi~----s~~d~~~~~~~Ga~~v 100 (254)
T TIGR00735 30 GDPVELAQRYDEEGADELVFLDITASSEGRTTMIDVVERTAE-----TVFIPLTVGGGIK----SIEDVDKLLRAGADKV 100 (254)
T ss_pred CCHHHHHHHHHHcCCCEEEEEcCCcccccChhhHHHHHHHHH-----hcCCCEEEECCCC----CHHHHHHHHHcCCCEE
Confidence 366778888999999999999855321100011112222111 0112333333332 3456667778899998
Q ss_pred EEecCCCchhhHHHHHHHHHHhCC-CceEE---ec--c-------------------ccCcHHHHHHHHCCCCEEEEccc
Q psy1056 347 ILDSSQGNSIYQIEMIKFIKKEYP-DMQVI---GG--N-------------------VLFGYQPRATLLNFIYQIEMIKF 401 (590)
Q Consensus 347 ~V~~~~G~~~~~l~~i~~i~~~~~-~vpvi---~g--~-------------------v~s~~~a~~l~~~Gvd~i~v~~~ 401 (590)
.+.+.--.. .+.++.+.+.|+ +-.++ ++ . ....+-++.+.++|++.|.++
T Consensus 101 ivgt~~~~~---p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~l~~~G~~~iivt-- 175 (254)
T TIGR00735 101 SINTAAVKN---PELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEWAKEVEKLGAGEILLT-- 175 (254)
T ss_pred EEChhHhhC---hHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCCCCHHHHHHHHHHcCCCEEEEe--
Confidence 875432111 345566666664 22121 11 1 112455688889999999652
Q ss_pred ccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcC-CCEEEECccc
Q psy1056 402 IKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALG-ASTAMMGSLL 462 (590)
Q Consensus 402 ~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalG-A~~v~~g~~l 462 (590)
....++ +.-|+....+.++++ ..++|+|++|||+++.|+.+++.+| ||+|++|++|
T Consensus 176 -~i~~~g-~~~g~~~~~~~~i~~---~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~ 232 (254)
T TIGR00735 176 -SMDKDG-TKSGYDLELTKAVSE---AVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVF 232 (254)
T ss_pred -CcCccc-CCCCCCHHHHHHHHH---hCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHH
Confidence 111111 112333333334443 3469999999999999999999999 9999999998
|
|
| >cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=98.22 E-value=3.2e-05 Score=77.37 Aligned_cols=174 Identities=20% Similarity=0.173 Sum_probs=100.0
Q ss_pred CHHHHHHHHHhcCCCcceEEcCCCc--eEEEEeecccccccCCCCCCcccCCceEEeEeeccchhHHHHHHHHHHcCCcE
Q psy1056 268 SLEEANVILEKSKKGKLPILNDKGE--LIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDV 345 (590)
Q Consensus 268 ~l~ea~~~m~~~~~~~lpVvd~~g~--l~Giit~~dll~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~gad~ 345 (590)
...+..+.+.+.+.+.+.++|-+.. --|. ..++++..... ..-++.....+. ..+.+..+++.|++.
T Consensus 28 d~~~~a~~~~~~G~~~i~i~d~~~~~~~~~~--~~~~i~~i~~~-----~~~pv~~~GGI~----s~~d~~~~l~~G~~~ 96 (243)
T cd04731 28 DPVELAKRYNEQGADELVFLDITASSEGRET--MLDVVERVAEE-----VFIPLTVGGGIR----SLEDARRLLRAGADK 96 (243)
T ss_pred CHHHHHHHHHHCCCCEEEEEcCCcccccCcc--cHHHHHHHHHh-----CCCCEEEeCCCC----CHHHHHHHHHcCCce
Confidence 5677888899999999999985532 1111 11122221111 112333333332 235556667789998
Q ss_pred EEEecCCCchhhHHHHHHHHHHhCCC--ceEE--ec------------------cccCcHHHHHHHHCCCCEEEEccccc
Q psy1056 346 VILDSSQGNSIYQIEMIKFIKKEYPD--MQVI--GG------------------NVLFGYQPRATLLNFIYQIEMIKFIK 403 (590)
Q Consensus 346 i~V~~~~G~~~~~l~~i~~i~~~~~~--vpvi--~g------------------~v~s~~~a~~l~~~Gvd~i~v~~~~~ 403 (590)
+.+...--.. .+.+..+.+.++. +.+- ++ ...+.+.++.+.++|+|+|.++.- +
T Consensus 97 v~ig~~~~~~---p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~G~d~i~v~~i-~ 172 (243)
T cd04731 97 VSINSAAVEN---PELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSM-D 172 (243)
T ss_pred EEECchhhhC---hHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHHHHCCCCEEEEecc-C
Confidence 8776532211 2334444444431 2211 11 122456678899999999965221 1
Q ss_pred ccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHc-CCCEEEECccc
Q psy1056 404 KEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALAL-GASTAMMGSLL 462 (590)
Q Consensus 404 ~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalal-GA~~v~~g~~l 462 (590)
+. -+.-|+....+..+ ....++|+|++|||+++.|+.+++.. |||+|++|++|
T Consensus 173 ~~---g~~~g~~~~~i~~i---~~~~~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al 226 (243)
T cd04731 173 RD---GTKKGYDLELIRAV---SSAVNIPVIASGGAGKPEHFVEAFEEGGADAALAASIF 226 (243)
T ss_pred CC---CCCCCCCHHHHHHH---HhhCCCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHH
Confidence 11 01112222223333 33347999999999999999999998 99999999998
|
Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. |
| >COG0516 GuaB IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.8e-07 Score=86.86 Aligned_cols=66 Identities=42% Similarity=0.466 Sum_probs=63.3
Q ss_pred EeccccccccCCCCCCC-CccCCcccccccccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCc
Q psy1056 69 VTSRDVDFLENSANMDL-KIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTRE 136 (590)
Q Consensus 69 vT~~Did~l~~~~~~~~-~~~~~~~~~l~~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~ 136 (590)
+|++ |+++.|+.+++ +...++++.+++.+.+..|++++.||++++..++++|++.||+|++|+|++
T Consensus 15 ltfd--dVll~p~~s~v~p~~~~vkt~i~~~i~l~iP~vSA~MDtVtea~mAi~ma~~GGIGVih~nm~ 81 (170)
T COG0516 15 LTFD--DVLLLPAASDVAPAGVDVKTGLGPGIGVNIPQVSAAMDTVTEARMAIAMARDGGIGVMHGNML 81 (170)
T ss_pred ceec--cCcchhhHHhhccCCCeeEecccCCcccCchHHHHHHHHHHHHHHhHHHHHcCCeEEEecccc
Confidence 8999 99999999998 878999999999999999999999999999999999999999999999987
|
|
| >TIGR00262 trpA tryptophan synthase, alpha subunit | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.5e-05 Score=77.47 Aligned_cols=135 Identities=16% Similarity=0.127 Sum_probs=86.7
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCC--------------------Cch-hhHHHHHHHHHHhCCCceEEe---ccc----c
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQ--------------------GNS-IYQIEMIKFIKKEYPDMQVIG---GNV----L 380 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~--------------------G~~-~~~l~~i~~i~~~~~~vpvi~---g~v----~ 380 (590)
+...+.+..+.+.|+|++.+-.+- |.. ..+++.++.+++..+++|++. -|. +
T Consensus 24 ~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv~m~Y~Npi~~~G 103 (256)
T TIGR00262 24 ETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIGLLTYYNLIFRKG 103 (256)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHhhhh
Confidence 345667889999999999986532 322 446778888887644677552 232 1
Q ss_pred CcHHHHHHHHCCCCEEEE--------------------------ccccc--cc------CC---------Cccccc--cc
Q psy1056 381 FGYQPRATLLNFIYQIEM--------------------------IKFIK--KE------YP---------DMQVIG--RN 415 (590)
Q Consensus 381 s~~~a~~l~~~Gvd~i~v--------------------------~~~~~--~~------~~---------~~~~~g--~~ 415 (590)
..+-++.+.++|+|++.+ +..+. |. .+ |++|.. ..
T Consensus 104 ~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~vs~~G~TG~~~~~~ 183 (256)
T TIGR00262 104 VEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLVSRAGVTGARNRAA 183 (256)
T ss_pred HHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEEEECCCCCCCcccCC
Confidence 234577889999999877 11111 00 00 122211 11
Q ss_pred hhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 416 GTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 416 ~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
......+.+..+..+.||+++|||+|+.++.+++..|||+|++|+.+.
T Consensus 184 ~~~~~~i~~lr~~~~~pi~vgfGI~~~e~~~~~~~~GADgvVvGSaiv 231 (256)
T TIGR00262 184 SALNELVKRLKAYSAKPVLVGFGISKPEQVKQAIDAGADGVIVGSAIV 231 (256)
T ss_pred hhHHHHHHHHHhhcCCCEEEeCCCCCHHHHHHHHHcCCCEEEECHHHH
Confidence 112222333333346899999999999999999999999999999884
|
Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences. |
| >cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=98.19 E-value=6e-06 Score=70.46 Aligned_cols=43 Identities=40% Similarity=0.797 Sum_probs=39.7
Q ss_pred CCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 28 DPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 28 ~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
++.++++++++.++++.|.+++.+.+||+|++ ++++|+++.+|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~G~v~~~~ 44 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDD---GRLVGIVTERD 44 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCC---CCEEEEEeHHH
Confidence 56789999999999999999999999999986 79999999994
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali |
| >PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4 | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.4e-05 Score=78.00 Aligned_cols=137 Identities=14% Similarity=0.121 Sum_probs=92.3
Q ss_pred chhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEecccc-CcHHHHHHHHCCCCEEEE--------
Q psy1056 328 READKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVL-FGYQPRATLLNFIYQIEM-------- 398 (590)
Q Consensus 328 ~~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~-s~~~a~~l~~~Gvd~i~v-------- 398 (590)
..+..+.+....++|++++.|.+...+..|-++.+..+++.. ++|+..|+.. ++.+..++..+|||+|-+
T Consensus 67 ~~d~~~~a~~y~~~GA~aiSVlTe~~~F~Gs~~dL~~v~~~~-~~PvL~KDFIid~~QI~eA~~~GADaVLLI~~~L~~~ 145 (254)
T PF00218_consen 67 DFDPAEIAKAYEEAGAAAISVLTEPKFFGGSLEDLRAVRKAV-DLPVLRKDFIIDPYQIYEARAAGADAVLLIAAILSDD 145 (254)
T ss_dssp S-SHHHHHHHHHHTT-SEEEEE--SCCCHHHHHHHHHHHHHS-SS-EEEES---SHHHHHHHHHTT-SEEEEEGGGSGHH
T ss_pred cCCHHHHHHHHHhcCCCEEEEECCCCCCCCCHHHHHHHHHHh-CCCcccccCCCCHHHHHHHHHcCCCEeehhHHhCCHH
Confidence 345678888999999999999888777788899999999887 7999998776 999999999999999975
Q ss_pred ------------------cccccccC------C----Ccccccc-chhH----HHHHHHHHhcCCCcEEecCCCCCHHHH
Q psy1056 399 ------------------IKFIKKEY------P----DMQVIGR-NGTA----VYRVAEYASRRGVPVIADGGVQSVGHV 445 (590)
Q Consensus 399 ------------------~~~~~~~~------~----~~~~~g~-~~~~----l~~~~~~~~~~~v~iia~GGi~~~~di 445 (590)
.+++..+. + |...+.. |.+. ..++...... ++.+|+.+||.++.|+
T Consensus 146 ~l~~l~~~a~~lGle~lVEVh~~~El~~al~~~a~iiGINnRdL~tf~vd~~~~~~l~~~ip~-~~~~iseSGI~~~~d~ 224 (254)
T PF00218_consen 146 QLEELLELAHSLGLEALVEVHNEEELERALEAGADIIGINNRDLKTFEVDLNRTEELAPLIPK-DVIVISESGIKTPEDA 224 (254)
T ss_dssp HHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTT-SEEEEESBCTTTCCBHTHHHHHHHCHSHT-TSEEEEESS-SSHHHH
T ss_pred HHHHHHHHHHHcCCCeEEEECCHHHHHHHHHcCCCEEEEeCccccCcccChHHHHHHHhhCcc-ceeEEeecCCCCHHHH
Confidence 00000000 0 1122222 3222 1223333332 4789999999999999
Q ss_pred HHHHHcCCCEEEECccccCCC
Q psy1056 446 MKALALGASTAMMGSLLAGTS 466 (590)
Q Consensus 446 ~kalalGA~~v~~g~~l~~~~ 466 (590)
.+....|+|+|.+|+.|+.+.
T Consensus 225 ~~l~~~G~davLVGe~lm~~~ 245 (254)
T PF00218_consen 225 RRLARAGADAVLVGEALMRSP 245 (254)
T ss_dssp HHHCTTT-SEEEESHHHHTSS
T ss_pred HHHHHCCCCEEEECHHHhCCC
Confidence 999999999999999986543
|
1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A .... |
| >PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.1e-05 Score=78.03 Aligned_cols=177 Identities=19% Similarity=0.116 Sum_probs=101.9
Q ss_pred CCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCCCCCCcccCCceEEeEeeccchhHHHHHHHHHHcCCcE
Q psy1056 266 GISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDV 345 (590)
Q Consensus 266 ~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~gad~ 345 (590)
...+.+..+.+.+.+.+.+-|+|-+..--+-=...++++..... ..-++.++..+. ..+.++.+++.|++.
T Consensus 29 ~~d~~~~a~~~~~~G~~~i~i~dl~~~~~~~~~~~~~i~~i~~~-----~~ipv~~~GGi~----s~~~~~~~l~~Ga~~ 99 (253)
T PRK02083 29 AGDPVELAKRYNEEGADELVFLDITASSEGRDTMLDVVERVAEQ-----VFIPLTVGGGIR----SVEDARRLLRAGADK 99 (253)
T ss_pred cCCHHHHHHHHHHcCCCEEEEEeCCcccccCcchHHHHHHHHHh-----CCCCEEeeCCCC----CHHHHHHHHHcCCCE
Confidence 34566677778899999999998543211111112222222111 111233333332 345566677789999
Q ss_pred EEEecCCCchhhHHHHHHHHHHhCCC--ceEEe--c-------------------cccCcHHHHHHHHCCCCEEEE-ccc
Q psy1056 346 VILDSSQGNSIYQIEMIKFIKKEYPD--MQVIG--G-------------------NVLFGYQPRATLLNFIYQIEM-IKF 401 (590)
Q Consensus 346 i~V~~~~G~~~~~l~~i~~i~~~~~~--vpvi~--g-------------------~v~s~~~a~~l~~~Gvd~i~v-~~~ 401 (590)
+.+.+.--.. .+.+..+.+.+++ +-+-+ + +....+.++++.++|++.+.+ ++.
T Consensus 100 Viigt~~l~~---p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~ii~~~i~ 176 (253)
T PRK02083 100 VSINSAAVAN---PELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSMD 176 (253)
T ss_pred EEEChhHhhC---cHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHHHHHHHHcCCCEEEEcCCc
Confidence 9886533111 2455556666531 11111 1 111245668888999998844 111
Q ss_pred ccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHc-CCCEEEECccc
Q psy1056 402 IKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALAL-GASTAMMGSLL 462 (590)
Q Consensus 402 ~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalal-GA~~v~~g~~l 462 (590)
+. -+.-|+....+.++. ...++|+|++|||++..|+.+++.. ||++|++|++|
T Consensus 177 --~~---g~~~g~d~~~i~~~~---~~~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al 230 (253)
T PRK02083 177 --RD---GTKNGYDLELTRAVS---DAVNVPVIASGGAGNLEHFVEAFTEGGADAALAASIF 230 (253)
T ss_pred --CC---CCCCCcCHHHHHHHH---hhCCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHH
Confidence 11 011133333333443 3346999999999999999999975 99999999998
|
|
| >PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.8e-05 Score=75.01 Aligned_cols=123 Identities=19% Similarity=0.163 Sum_probs=74.4
Q ss_pred HHHHHHHc-CCcEEEEecC------CCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccC
Q psy1056 334 RLKLLSQA-GVDVVILDSS------QGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEY 406 (590)
Q Consensus 334 ~~~~li~~-gad~i~V~~~------~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~ 406 (590)
.++...+. +-+.|-+..- ..+....++.-+.+.+. +..|+..--.++..|++|.++|+.++-- -....
T Consensus 81 ~A~laRe~~~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~e--GF~VlPY~~~D~v~akrL~d~GcaavMP--lgsPI- 155 (247)
T PF05690_consen 81 TARLAREAFGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKE--GFVVLPYCTDDPVLAKRLEDAGCAAVMP--LGSPI- 155 (247)
T ss_dssp HHHHHHHTTS-SEEEE--BS-TTT--B-HHHHHHHHHHHHHT--T-EEEEEE-S-HHHHHHHHHTT-SEBEE--BSSST-
T ss_pred HHHHHHHHcCCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHC--CCEEeecCCCCHHHHHHHHHCCCCEEEe--ccccc-
Confidence 45555555 5677655432 13334445555666654 4444444556899999999999998822 00111
Q ss_pred CCcccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCCC
Q psy1056 407 PDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTS 466 (590)
Q Consensus 407 ~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~~ 466 (590)
-+|.|+ +...+..+.+.. ++|||.|+||.+|.|++.|+.||||+|++-+.++.+.
T Consensus 156 --GSg~Gi~n~~~l~~i~~~~---~vPvIvDAGiG~pSdaa~AMElG~daVLvNTAiA~A~ 211 (247)
T PF05690_consen 156 --GSGRGIQNPYNLRIIIERA---DVPVIVDAGIGTPSDAAQAMELGADAVLVNTAIAKAK 211 (247)
T ss_dssp --TT---SSTHHHHHHHHHHG---SSSBEEES---SHHHHHHHHHTT-SEEEESHHHHTSS
T ss_pred --ccCcCCCCHHHHHHHHHhc---CCcEEEeCCCCCHHHHHHHHHcCCceeehhhHHhccC
Confidence 233477 777776666543 6999999999999999999999999999999997554
|
ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=98.17 E-value=4.2e-06 Score=88.39 Aligned_cols=101 Identities=16% Similarity=0.279 Sum_probs=86.2
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhccccccccccchhhccccCCCeeEEcCCCC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGIS 268 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~ 268 (590)
+.+..++++.| ...+...+.|+++ ++++.|+++.+++...... ...+.+.|.+ .+.+++++++
T Consensus 258 ~~~~~~~~~~~---------~~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~~~ 320 (363)
T TIGR01186 258 DKGPRSALQLM---------RDERVDSLYVVDR---QNKLVGVVDVESIKQARKK---AQGLQDVLID--DIYTVDAGTL 320 (363)
T ss_pred CCCHHHHHHHH---------HhcCCceEEEEcC---CCCEEEEEeHHHHHHHhhc---CCchhhhhcc--CCceECCCCc
Confidence 44678888888 8888888899998 7999999999998722211 2458888887 8899999999
Q ss_pred HHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccC
Q psy1056 269 LEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRD 307 (590)
Q Consensus 269 l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~ 307 (590)
+.+++..|.+++.. +||+|++|+++|+||+.++++.+.
T Consensus 321 ~~~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~~ 358 (363)
T TIGR01186 321 LRETVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDALY 358 (363)
T ss_pred HHHHHHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHHH
Confidence 99999999999999 999999999999999999988754
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=4.1e-06 Score=89.52 Aligned_cols=101 Identities=13% Similarity=0.166 Sum_probs=87.3
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhccccccccccchhhccccCCCeeEEcCCCC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGIS 268 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~ 268 (590)
..+..+++..| ...+...++|+|+ +++++|+++.+++...... ..++.+.+.+ ...++.++++
T Consensus 293 ~~~~~~~~~~~---------~~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~~~ 355 (400)
T PRK10070 293 GFGPRSALKLL---------QDEDREYGYVIER---GNKFVGAVSIDSLKTALTQ---QQGLDAALID--APLAVDAQTP 355 (400)
T ss_pred CCCHHHHHHHH---------HhcCCceEEEEcC---CCcEEEEEeHHHHHhhhhc---CCchhhhhcc--CCceeCCCCC
Confidence 44678889999 8899999999998 7999999999999733222 2468888887 8899999999
Q ss_pred HHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccC
Q psy1056 269 LEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRD 307 (590)
Q Consensus 269 l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~ 307 (590)
+.+++..|.++... +||+|++|+++|+||+.++++.+.
T Consensus 356 ~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~ 393 (400)
T PRK10070 356 LSELLSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRALD 393 (400)
T ss_pred HHHHHHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHHH
Confidence 99999999998877 999999999999999999998764
|
|
| >cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS) | Back alignment and domain information |
|---|
Probab=98.17 E-value=7.3e-05 Score=72.48 Aligned_cols=120 Identities=18% Similarity=0.135 Sum_probs=82.9
Q ss_pred HHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEe--ccccCcHHHHHHHHCCCCEEEEcccccccCCCccc
Q psy1056 334 RLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIG--GNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQV 411 (590)
Q Consensus 334 ~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~--g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~ 411 (590)
.++.+.++|++.+.++...+. ....+.++.+++. ++++++ -+..|++++.++.+.|+|++.+....+.. ..+
T Consensus 69 ~~~~~~~aGad~i~~h~~~~~-~~~~~~i~~~~~~--g~~~~v~~~~~~t~~e~~~~~~~~~d~v~~~~~~~~~---~~~ 142 (202)
T cd04726 69 EAEMAFKAGADIVTVLGAAPL-STIKKAVKAAKKY--GKEVQVDLIGVEDPEKRAKLLKLGVDIVILHRGIDAQ---AAG 142 (202)
T ss_pred HHHHHHhcCCCEEEEEeeCCH-HHHHHHHHHHHHc--CCeEEEEEeCCCCHHHHHHHHHCCCCEEEEcCccccc---ccC
Confidence 457788999999998765432 2234566666654 677664 57789999988888999998552111111 111
Q ss_pred ccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccC
Q psy1056 412 IGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAG 464 (590)
Q Consensus 412 ~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~ 464 (590)
+. ....+..+.+. .++|++++|||+ +.++.+++..|||++.+|+.+..
T Consensus 143 -~~~~~~~i~~~~~~---~~~~i~~~GGI~-~~~i~~~~~~Gad~vvvGsai~~ 191 (202)
T cd04726 143 -GWWPEDDLKKVKKL---LGVKVAVAGGIT-PDTLPEFKKAGADIVIVGRAITG 191 (202)
T ss_pred -CCCCHHHHHHHHhh---cCCCEEEECCcC-HHHHHHHHhcCCCEEEEeehhcC
Confidence 12 33334333332 469999999995 99999999999999999998854
|
KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates. |
| >cd02911 arch_FMN Archeal FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.16 E-value=5e-05 Score=75.32 Aligned_cols=115 Identities=14% Similarity=0.086 Sum_probs=77.9
Q ss_pred HHHHHHHHHHcCCcEEEEecC--C------C-------chhhHHHHHHHHHHhCCCceEEecc-----ccCcHHHHHHHH
Q psy1056 331 DKNRLKLLSQAGVDVVILDSS--Q------G-------NSIYQIEMIKFIKKEYPDMQVIGGN-----VLFGYQPRATLL 390 (590)
Q Consensus 331 ~~e~~~~li~~gad~i~V~~~--~------G-------~~~~~l~~i~~i~~~~~~vpvi~g~-----v~s~~~a~~l~~ 390 (590)
..+.++.+.+ .++.+.++.. + | +...+.+.++.+++. ++||.+|- ..+.+-++.+.+
T Consensus 87 ~~~aa~~~~~-~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~~--~~pVsvKir~g~~~~~~~la~~l~~ 163 (233)
T cd02911 87 LLNAAALVAK-NAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKET--GVPVSVKIRAGVDVDDEELARLIEK 163 (233)
T ss_pred HHHHHHHHhh-cCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHhc--CCCEEEEEcCCcCcCHHHHHHHHHH
Confidence 3444554444 5688888752 2 1 133446777888763 78888764 245677788999
Q ss_pred CCCCEEEEcccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcc
Q psy1056 391 NFIYQIEMIKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSL 461 (590)
Q Consensus 391 ~Gvd~i~v~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~ 461 (590)
+|+|+|.++ +. ..+ +. ....+.++. .++|||+.|||.++.|+.+++..|||+||+|+.
T Consensus 164 aG~d~ihv~--~~-----~~g-~~ad~~~I~~i~-----~~ipVIgnGgI~s~eda~~~l~~GaD~VmiGR~ 222 (233)
T cd02911 164 AGADIIHVD--AM-----DPG-NHADLKKIRDIS-----TELFIIGNNSVTTIESAKEMFSYGADMVSVARA 222 (233)
T ss_pred hCCCEEEEC--cC-----CCC-CCCcHHHHHHhc-----CCCEEEEECCcCCHHHHHHHHHcCCCEEEEcCC
Confidence 999988442 11 111 11 223333332 469999999999999999999999999999997
|
This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown. |
| >PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.2e-05 Score=90.01 Aligned_cols=187 Identities=19% Similarity=0.267 Sum_probs=115.2
Q ss_pred cchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCCCCC----------------
Q psy1056 248 LKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDS---------------- 311 (590)
Q Consensus 248 ~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~~~~---------------- 311 (590)
.+|+++|++ +++++++++++.+|+++|.+++++.+||+|++|+++|+||..|+.+.......
T Consensus 68 ~~V~dim~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~Givt~~di~~~~~~~~~~~~~~~~~~t~~~i~~ 145 (546)
T PRK14869 68 PQVRDLEID--KPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDLARAYMDILDPEILSKSPTSLENIIR 145 (546)
T ss_pred CcHHHhcCC--CCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhhcchhhhhhcCCCHHHHHH
Confidence 679999998 99999999999999999999999999999999999999999999875432110
Q ss_pred ------------CcccCCceEEeEeec-------------cchhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHH
Q psy1056 312 ------------SKDENNQLIVGAAIG-------------TREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIK 366 (590)
Q Consensus 312 ------------~~d~~~~l~v~a~i~-------------~~~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~ 366 (590)
.....+++.+++... ...+..+....+++.|+..+++......... .++.++
T Consensus 146 ~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d~~~~ai~~~~~~lIlt~g~~~~~~---v~~la~ 222 (546)
T PRK14869 146 TLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDREDIQLAAIEAGVRLLIITGGAPVSED---VLELAK 222 (546)
T ss_pred hcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHHHHHHHHHcCCCEEEECCCCCCCHH---HHHHHH
Confidence 011133444433211 0123344555778888888888665544433 333333
Q ss_pred HhCCCceEEeccccCcHHHHHHHHCCCCEEEE-cccccccCCCccccccchhHHHHHHHHHhcC---CCcEEe-cC---C
Q psy1056 367 KEYPDMQVIGGNVLFGYQPRATLLNFIYQIEM-IKFIKKEYPDMQVIGRNGTAVYRVAEYASRR---GVPVIA-DG---G 438 (590)
Q Consensus 367 ~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v-~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~---~v~iia-~G---G 438 (590)
+. ++|++.=.-.+.+.++.+... ..| .+-+++. +.-.. .-..+.++.+..... .+||+- +| |
T Consensus 223 ~~--~i~ii~t~~dt~~t~~~l~~~----~~V~~iM~~~~---~~~~~-~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvG 292 (546)
T PRK14869 223 EN--GVTVISTPYDTFTTARLINQS----IPVSYIMTTED---LVTFS-KDDYLEDVKEVMLKSRYRSYPVVDEDGKVVG 292 (546)
T ss_pred hC--CCeEEEecccHHHHHHHhhcC----CCHHHhccCCC---cEEEC-CCCcHHHHHHHHHhcCCCceEEEcCCCCEEE
Confidence 43 788887555566666665432 111 0001011 00000 112344444443322 478886 45 7
Q ss_pred CCCHHHHHHHH
Q psy1056 439 VQSVGHVMKAL 449 (590)
Q Consensus 439 i~~~~di~kal 449 (590)
+-+..|+.+..
T Consensus 293 iit~~dl~~~~ 303 (546)
T PRK14869 293 VISRYHLLSPV 303 (546)
T ss_pred EEEHHHhhccc
Confidence 88888888744
|
|
| >TIGR00742 yjbN tRNA dihydrouridine synthase A | Back alignment and domain information |
|---|
Probab=98.13 E-value=6.5e-05 Score=77.92 Aligned_cols=133 Identities=11% Similarity=0.040 Sum_probs=84.3
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCC----------C-----chhhHHHHHHHHHHhCCCceEEecccc------C----cH
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQ----------G-----NSIYQIEMIKFIKKEYPDMQVIGGNVL------F----GY 383 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~----------G-----~~~~~l~~i~~i~~~~~~vpvi~g~v~------s----~~ 383 (590)
+...+.+..+.+.|++.|-+|..- | +++.+.+.++.+++.. ++||.+|-=. + .+
T Consensus 67 ~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~-~~PVsvKiR~g~~~~~~~~~~~~ 145 (318)
T TIGR00742 67 NDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAV-NIPVTVKHRIGIDPLDSYEFLCD 145 (318)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHh-CCCeEEEEecCCCCcchHHHHHH
Confidence 344456666667899999988621 1 2233567888888876 6888877321 1 23
Q ss_pred HHHHHHHCCCCEEEEcccccccCCCcccc---ccchhHHHHHHHHHhcC-CCcEEecCCCCCHHHHHHHHHcCCCEEEEC
Q psy1056 384 QPRATLLNFIYQIEMIKFIKKEYPDMQVI---GRNGTAVYRVAEYASRR-GVPVIADGGVQSVGHVMKALALGASTAMMG 459 (590)
Q Consensus 384 ~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~---g~~~~~l~~~~~~~~~~-~v~iia~GGi~~~~di~kalalGA~~v~~g 459 (590)
-++.+.++|+++|.|...+... .++.+- ...+.....+.+..... ++|||+-|||.|+.|+.+.+. |||+||+|
T Consensus 146 ~~~~l~~~G~~~itvHgRt~~~-qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~NGdI~s~~da~~~l~-g~dgVMig 223 (318)
T TIGR00742 146 FVEIVSGKGCQNFIVHARKAWL-SGLSPKENREIPPLRYERVYQLKKDFPHLTIEINGGIKNSEQIKQHLS-HVDGVMVG 223 (318)
T ss_pred HHHHHHHcCCCEEEEeCCchhh-cCCCccccccCCchhHHHHHHHHHhCCCCcEEEECCcCCHHHHHHHHh-CCCEEEEC
Confidence 3678888999999774322100 112110 01111112233333333 699999999999999999997 99999999
Q ss_pred ccccC
Q psy1056 460 SLLAG 464 (590)
Q Consensus 460 ~~l~~ 464 (590)
+.+..
T Consensus 224 Rgal~ 228 (318)
T TIGR00742 224 REAYE 228 (318)
T ss_pred HHHHh
Confidence 87753
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >TIGR01137 cysta_beta cystathionine beta-synthase | Back alignment and domain information |
|---|
Probab=98.12 E-value=6.3e-06 Score=90.27 Aligned_cols=48 Identities=31% Similarity=0.596 Sum_probs=44.7
Q ss_pred CccccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 23 HGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 23 ~~m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
++|.++++++++++|+.+|++.|.+++++.+||+|++ ++++|+||.+|
T Consensus 339 ~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~---~~~~Givt~~d 386 (454)
T TIGR01137 339 DLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEA---GKVLGSVTLRE 386 (454)
T ss_pred HhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC---CeEEEEEEHHH
Confidence 4499999999999999999999999999999999986 79999999994
|
Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven. |
| >PRK11815 tRNA-dihydrouridine synthase A; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=7.7e-05 Score=78.07 Aligned_cols=130 Identities=14% Similarity=0.083 Sum_probs=83.5
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCC----------C-----chhhHHHHHHHHHHhCCCceEEecc-cc-----C----cH
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQ----------G-----NSIYQIEMIKFIKKEYPDMQVIGGN-VL-----F----GY 383 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~----------G-----~~~~~l~~i~~i~~~~~~vpvi~g~-v~-----s----~~ 383 (590)
+...+.+..+.++|+|.|.++..- | +.+.+.+.++.+++.. +.|+.+|- ++ + .+
T Consensus 77 ~~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v-~~pVsvKiR~g~~~~~t~~~~~~ 155 (333)
T PRK11815 77 ADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAV-SIPVTVKHRIGIDDQDSYEFLCD 155 (333)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHc-CCceEEEEEeeeCCCcCHHHHHH
Confidence 344556777778899999888521 1 2344568888888876 67888752 11 1 23
Q ss_pred HHHHHHHCCCCEEEEcccccccCCCccc-----ccc-chhHHHHHHHHHhcC-CCcEEecCCCCCHHHHHHHHHcCCCEE
Q psy1056 384 QPRATLLNFIYQIEMIKFIKKEYPDMQV-----IGR-NGTAVYRVAEYASRR-GVPVIADGGVQSVGHVMKALALGASTA 456 (590)
Q Consensus 384 ~a~~l~~~Gvd~i~v~~~~~~~~~~~~~-----~g~-~~~~l~~~~~~~~~~-~v~iia~GGi~~~~di~kalalGA~~v 456 (590)
-++.+.++|+|+|.|...+. ...++.+ ++. ....+..+ .+.. ++|||+.|||+++.|+.++++ |||+|
T Consensus 156 ~~~~l~~aG~d~i~vh~Rt~-~~~g~~~~~~~~~~~~~~~~i~~v---~~~~~~iPVI~nGgI~s~eda~~~l~-~aDgV 230 (333)
T PRK11815 156 FVDTVAEAGCDTFIVHARKA-WLKGLSPKENREIPPLDYDRVYRL---KRDFPHLTIEINGGIKTLEEAKEHLQ-HVDGV 230 (333)
T ss_pred HHHHHHHhCCCEEEEcCCch-hhcCCCccccccCCCcCHHHHHHH---HHhCCCCeEEEECCcCCHHHHHHHHh-cCCEE
Confidence 35778889999996632111 0011111 011 12223333 3332 699999999999999999997 79999
Q ss_pred EECccccC
Q psy1056 457 MMGSLLAG 464 (590)
Q Consensus 457 ~~g~~l~~ 464 (590)
|+|+.+..
T Consensus 231 mIGRa~l~ 238 (333)
T PRK11815 231 MIGRAAYH 238 (333)
T ss_pred EEcHHHHh
Confidence 99988743
|
|
| >KOG1764|consensus | Back alignment and domain information |
|---|
Probab=98.07 E-value=3.9e-05 Score=81.37 Aligned_cols=260 Identities=13% Similarity=0.111 Sum_probs=158.0
Q ss_pred ccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEecccc-ccccCCCCCCCCccCCcccccccccccCCc
Q psy1056 26 IRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV-DFLENSANMDLKIEKDLSSPLTKKITLAAP 104 (590)
Q Consensus 26 ~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Di-d~l~~~~~~~~~~~~~~~~~l~~~~~~~~p 104 (590)
....+.++...++.+|...+..+..+..||.|.. ..++.|++|..|+ .+++..-. ....
T Consensus 75 ~~~l~~~d~~~~v~~a~~~l~~~~~~~~p~~~~~--~~~~~g~~~~~d~i~~~~~~~~----------~~~~-------- 134 (381)
T KOG1764|consen 75 SSKLVVFDTKLSVKKAFNALVQNGVRAAPLWDSK--KQQFVGMLTITDFITVLLRYYK----------SKSS-------- 134 (381)
T ss_pred cceeEEeeCCCcHHHHHHHHHhhceeeeccccCc--cceeEEEEEHHHHHHHHHHhhc----------cCCc--------
Confidence 3456689999999999999999999999999964 2799999999952 22211100 0000
Q ss_pred eeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHHcCCcEEEEcCCCCchHHHHHHHHHhhhcCCCcccccc
Q psy1056 105 LVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGG 184 (590)
Q Consensus 105 iv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~im~~ 184 (590)
.+..+.......++ .. .+..+.. . ....
T Consensus 135 ---------~~~~~~~~~~~~~~----------------------------------~~----~~~~~~~-~----~~~~ 162 (381)
T KOG1764|consen 135 ---------LDNIEVLEDSQLSK----------------------------------RR----EVECLLK-E----TLKP 162 (381)
T ss_pred ---------HHHHhhhhhhhccc----------------------------------cc----hhhhhhc-c----ccCC
Confidence 00000000000000 00 0000000 0 0111
Q ss_pred c-ccc--hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhh-cccc-------ccccccchhhc
Q psy1056 185 N-VVT--TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVD-FLEN-------SANMDLKIEKV 253 (590)
Q Consensus 185 ~-~~~--~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~-~~~~-------~~~~~~~V~~i 253 (590)
+ +.. ..++-++...+ .++++.++||.|.. .+.++.++|.+-+. +... ..++..++.|.
T Consensus 163 ~~~~i~p~~s~l~~~~~l---------~~~~~~rvpv~d~~--~~~v~~ilt~~rIl~~l~~~~~~~~~~~~l~~s~~dl 231 (381)
T KOG1764|consen 163 PFVSISPESSLLDAVLLL---------IKSRIHRVPVIDPE--TGEVLYILTQRRILKFLWLNGRLLPLPSLLSKSLSDL 231 (381)
T ss_pred CceeecCcHHHHHHHHHH---------HhCCccceeeeccc--ccceeeehhHHHHHHHHHHhhcccccHHHhhCCHHHh
Confidence 1 112 66666777777 89999999999831 46999999999987 2211 11223444433
Q ss_pred ccc-CCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCCCCC---Ccc-------cCCceEE-
Q psy1056 254 MTN-VNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDS---SKD-------ENNQLIV- 321 (590)
Q Consensus 254 m~~-~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~~~~---~~d-------~~~~l~v- 321 (590)
-.. -.++..+..++++.+|+++|.++++..+||||++|+.+|.++..|+......... ... ..+.-.-
T Consensus 232 ~ig~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~ 311 (381)
T KOG1764|consen 232 GIGTWSNIASISEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVIHLAREGTYNNLDLSCLSEALSHRPIRFEG 311 (381)
T ss_pred CcchhhhheeecCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhhhhhhcCccCccchhHHHHHhhhcccccCc
Confidence 221 1158889999999999999999999999999999999999999998776442111 000 0000000
Q ss_pred eEeeccchhHHHHHHHHHHcCCcEEEEecCCCchhhH---HHHHHHHHHh
Q psy1056 322 GAAIGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQ---IEMIKFIKKE 368 (590)
Q Consensus 322 ~a~i~~~~~~~e~~~~li~~gad~i~V~~~~G~~~~~---l~~i~~i~~~ 368 (590)
...+.......+.+..++...+..+.|...+|...|+ -+.+..+...
T Consensus 312 vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~l~~~ 361 (381)
T KOG1764|consen 312 VVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSYLVLT 361 (381)
T ss_pred cEEEeecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHHHHHhC
Confidence 1234455667778888888888877765555544443 3555555543
|
|
| >cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.5e-05 Score=69.64 Aligned_cols=43 Identities=21% Similarity=0.477 Sum_probs=38.2
Q ss_pred cCCEEECCCCCHHHHHHHHHHcC-ccceeeccCCcccceeEEEEeccc
Q psy1056 27 RDPVCIAPSTTLGKVLQMKKQHG-FCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 27 ~~~vtv~~~~ti~eA~~lM~~~~-i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
+++.++++++|+.+|++.|.+.+ ++.+||+|++ +++|+++..|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~~----~~~G~v~~~~ 44 (119)
T cd04598 1 RPAPTVSPDTTVNDVLERFERDPDLSALAVVDDG----RPVGLIMREA 44 (119)
T ss_pred CCcCccCCCCcHHHHHHHHHhCCCccEEEEEECC----eeEEEEEHHH
Confidence 35678999999999999998887 8999999875 9999999994
|
The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >PRK07695 transcriptional regulator TenI; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=6.2e-05 Score=73.07 Aligned_cols=115 Identities=17% Similarity=0.129 Sum_probs=75.4
Q ss_pred HHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEc-ccccccCCCcccccc
Q psy1056 336 KLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMI-KFIKKEYPDMQVIGR 414 (590)
Q Consensus 336 ~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~-~~~~~~~~~~~~~g~ 414 (590)
+...+.+++.+++.. .+. .++.+++.+|+..+.+ .+.+.++++++.++|+|++-++ +..+..+.+....|
T Consensus 67 ~la~~~~~~gvHl~~--~~~-----~~~~~r~~~~~~~ig~-s~~s~e~a~~a~~~Gadyi~~g~v~~t~~k~~~~~~g- 137 (201)
T PRK07695 67 DIALLLNIHRVQLGY--RSF-----SVRSVREKFPYLHVGY-SVHSLEEAIQAEKNGADYVVYGHVFPTDCKKGVPARG- 137 (201)
T ss_pred HHHHHcCCCEEEeCc--ccC-----CHHHHHHhCCCCEEEE-eCCCHHHHHHHHHcCCCEEEECCCCCCCCCCCCCCCC-
Confidence 344556777777632 211 2445566666666655 6889999999999999999442 11111111111111
Q ss_pred chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccC
Q psy1056 415 NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAG 464 (590)
Q Consensus 415 ~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~ 464 (590)
+..+++.....++|+++.||| ++.++..++..||++|.+|+.+..
T Consensus 138 ----~~~l~~~~~~~~ipvia~GGI-~~~~~~~~~~~Ga~gvav~s~i~~ 182 (201)
T PRK07695 138 ----LEELSDIARALSIPVIAIGGI-TPENTRDVLAAGVSGIAVMSGIFS 182 (201)
T ss_pred ----HHHHHHHHHhCCCCEEEEcCC-CHHHHHHHHHcCCCEEEEEHHHhc
Confidence 222333333456999999999 999999999999999999998853
|
|
| >CHL00162 thiG thiamin biosynthesis protein G; Validated | Back alignment and domain information |
|---|
Probab=98.04 E-value=5.6e-05 Score=73.76 Aligned_cols=100 Identities=18% Similarity=0.147 Sum_probs=71.0
Q ss_pred chhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEE--cccccccCCCcccccc-chhHHHHHHHHHhcCC
Q psy1056 354 NSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEM--IKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRG 430 (590)
Q Consensus 354 ~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v--~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~ 430 (590)
+....++.-+.+.+. +..|+..--.++..|++|.++|+.++-- ++-. +|-|+ ++..+..+.+ ..+
T Consensus 122 D~~etl~Aae~Lv~e--GF~VlPY~~~D~v~a~rLed~Gc~aVMPlgsPIG-------Sg~Gl~n~~~l~~i~e---~~~ 189 (267)
T CHL00162 122 DPIGTLKAAEFLVKK--GFTVLPYINADPMLAKHLEDIGCATVMPLGSPIG-------SGQGLQNLLNLQIIIE---NAK 189 (267)
T ss_pred ChHHHHHHHHHHHHC--CCEEeecCCCCHHHHHHHHHcCCeEEeeccCccc-------CCCCCCCHHHHHHHHH---cCC
Confidence 333344444555444 3444444555888999999999999822 2111 23366 6666655554 346
Q ss_pred CcEEecCCCCCHHHHHHHHHcCCCEEEECccccCC
Q psy1056 431 VPVIADGGVQSVGHVMKALALGASTAMMGSLLAGT 465 (590)
Q Consensus 431 v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~ 465 (590)
+|||.++||.++.|+++|+.||||+|++.+.++.+
T Consensus 190 vpVivdAGIgt~sDa~~AmElGaDgVL~nSaIakA 224 (267)
T CHL00162 190 IPVIIDAGIGTPSEASQAMELGASGVLLNTAVAQA 224 (267)
T ss_pred CcEEEeCCcCCHHHHHHHHHcCCCEEeecceeecC
Confidence 99999999999999999999999999999999744
|
|
| >cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.03 E-value=9.8e-05 Score=78.78 Aligned_cols=132 Identities=18% Similarity=0.110 Sum_probs=86.8
Q ss_pred hHHHHHHHHHHcCCcEEEEecCC-Cc------------------------hhhHHHHHHHHHHhCC-CceEEecc-----
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQ-GN------------------------SIYQIEMIKFIKKEYP-DMQVIGGN----- 378 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~-G~------------------------~~~~l~~i~~i~~~~~-~vpvi~g~----- 378 (590)
...+.++.+.++|.|.+.|+.++ |. ..+.++.++.+++..+ +.||.++=
T Consensus 151 ~f~~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~ 230 (382)
T cd02931 151 KFGESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSY 230 (382)
T ss_pred HHHHHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEechhh
Confidence 44556778888999999998765 43 1345788999999874 55666531
Q ss_pred -----------------ccCcHH----HHHHHHCCCCEEEEcccccccC----C-CccccccchhHHHHHHHHHhcCCCc
Q psy1056 379 -----------------VLFGYQ----PRATLLNFIYQIEMIKFIKKEY----P-DMQVIGRNGTAVYRVAEYASRRGVP 432 (590)
Q Consensus 379 -----------------v~s~~~----a~~l~~~Gvd~i~v~~~~~~~~----~-~~~~~g~~~~~l~~~~~~~~~~~v~ 432 (590)
..+.++ ++.|.++|+|+|.|+..+.... . .+...|.. +..++.+.+..++|
T Consensus 231 ~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~g~~~~~~~~~~~~~~~~~~~---~~~~~~ik~~~~~p 307 (382)
T cd02931 231 IKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAGSYDAWYWNHPPMYQKKGMY---LPYCKALKEVVDVP 307 (382)
T ss_pred ccccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCcccccccCCccCCcchh---HHHHHHHHHHCCCC
Confidence 123344 4667779999998854321110 0 00000111 11222222334799
Q ss_pred EEecCCCCCHHHHHHHHHcC-CCEEEECccccC
Q psy1056 433 VIADGGVQSVGHVMKALALG-ASTAMMGSLLAG 464 (590)
Q Consensus 433 iia~GGi~~~~di~kalalG-A~~v~~g~~l~~ 464 (590)
||+.|||+++.++.++|+-| ||+|++|++|..
T Consensus 308 vi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~la 340 (382)
T cd02931 308 VIMAGRMEDPELASEAINEGIADMISLGRPLLA 340 (382)
T ss_pred EEEeCCCCCHHHHHHHHHcCCCCeeeechHhHh
Confidence 99999999999999999987 999999998853
|
Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae. |
| >cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain | Back alignment and domain information |
|---|
Probab=98.01 E-value=9.6e-05 Score=77.64 Aligned_cols=132 Identities=19% Similarity=0.184 Sum_probs=86.1
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCc------------------------hhhHHHHHHHHHHhCC-CceEEec-------
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGN------------------------SIYQIEMIKFIKKEYP-DMQVIGG------- 377 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~------------------------~~~~l~~i~~i~~~~~-~vpvi~g------- 377 (590)
+..+.++.+.++|.|.+.++..+|. .+...+.++.+++..+ +.|+.++
T Consensus 155 ~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~ 234 (336)
T cd02932 155 AFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWV 234 (336)
T ss_pred HHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccccC
Confidence 4445677888899999999865431 1334788999999884 6788775
Q ss_pred -cccCcHHH----HHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcC
Q psy1056 378 -NVLFGYQP----RATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALG 452 (590)
Q Consensus 378 -~v~s~~~a----~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalG 452 (590)
...+.+++ +.|.++|+|+|.|+...... ......+ ...-+..+++..+..++||++.|||.++.++.++++.|
T Consensus 235 ~~g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~-~~~~~~~-~~~~~~~~~~ir~~~~iPVi~~G~i~t~~~a~~~l~~g 312 (336)
T cd02932 235 EGGWDLEDSVELAKALKELGVDLIDVSSGGNSP-AQKIPVG-PGYQVPFAERIRQEAGIPVIAVGLITDPEQAEAILESG 312 (336)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCc-ccccCCC-ccccHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHcC
Confidence 22244444 56677999999774221100 0000000 00011222233333579999999999999999999999
Q ss_pred -CCEEEECcccc
Q psy1056 453 -ASTAMMGSLLA 463 (590)
Q Consensus 453 -A~~v~~g~~l~ 463 (590)
||+|++|+++.
T Consensus 313 ~aD~V~~gR~~i 324 (336)
T cd02932 313 RADLVALGRELL 324 (336)
T ss_pred CCCeehhhHHHH
Confidence 99999999885
|
YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs. |
| >PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes | Back alignment and domain information |
|---|
Probab=98.01 E-value=7.9e-05 Score=73.84 Aligned_cols=132 Identities=20% Similarity=0.234 Sum_probs=83.7
Q ss_pred hhHHHHHHHHHHcCCcEEEEec---C-CCchhhHHHHHHHHHHhCCCceEEec-cccCcHHHHHHHHCCCCEEEE-----
Q psy1056 329 EADKNRLKLLSQAGVDVVILDS---S-QGNSIYQIEMIKFIKKEYPDMQVIGG-NVLFGYQPRATLLNFIYQIEM----- 398 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~---~-~G~~~~~l~~i~~i~~~~~~vpvi~g-~v~s~~~a~~l~~~Gvd~i~v----- 398 (590)
.+..+.++.+.+.|++.+++-. . +|.. .-.+.++.+.+.+ .+|+.+| ++.+.++++++.++|++.+.+
T Consensus 29 ~dP~~~a~~~~~~g~~~l~ivDLdaa~~g~~-~n~~~i~~i~~~~-~~~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt~~~ 106 (229)
T PF00977_consen 29 GDPVEVAKAFNEQGADELHIVDLDAAKEGRG-SNLELIKEIAKET-GIPIQVGGGIRSIEDAERLLDAGADRVVIGTEAL 106 (229)
T ss_dssp CCHHHHHHHHHHTT-SEEEEEEHHHHCCTHH-HHHHHHHHHHHHS-SSEEEEESSE-SHHHHHHHHHTT-SEEEESHHHH
T ss_pred cCHHHHHHHHHHcCCCEEEEEEccCcccCch-hHHHHHHHHHhcC-CccEEEeCccCcHHHHHHHHHhCCCEEEeChHHh
Confidence 3456788888889999887643 2 2322 2357888888887 5888864 555999999999999999877
Q ss_pred --------------------ccccccc-CCCcccc-------------------------------cc-chhHHHHHHHH
Q psy1056 399 --------------------IKFIKKE-YPDMQVI-------------------------------GR-NGTAVYRVAEY 425 (590)
Q Consensus 399 --------------------~~~~~~~-~~~~~~~-------------------------------g~-~~~~l~~~~~~ 425 (590)
++..... .--..+| |. +--.+..+...
T Consensus 107 ~~~~~l~~~~~~~g~~~ivvslD~~~g~~v~~~gw~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G~d~~~~~~l 186 (229)
T PF00977_consen 107 EDPELLEELAERYGSQRIVVSLDARDGYKVATNGWQESSGIDLEEFAKRLEELGAGEIILTDIDRDGTMQGPDLELLKQL 186 (229)
T ss_dssp HCCHHHHHHHHHHGGGGEEEEEEEEETEEEEETTTTEEEEEEHHHHHHHHHHTT-SEEEEEETTTTTTSSS--HHHHHHH
T ss_pred hchhHHHHHHHHcCcccEEEEEEeeeceEEEecCccccCCcCHHHHHHHHHhcCCcEEEEeeccccCCcCCCCHHHHHHH
Confidence 0100000 0000111 11 10111112233
Q ss_pred HhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 426 ASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 426 ~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
+...++|+|++|||++..|+.++...|+++|.+|++|
T Consensus 187 ~~~~~~~viasGGv~~~~Dl~~l~~~G~~gvivg~al 223 (229)
T PF00977_consen 187 AEAVNIPVIASGGVRSLEDLRELKKAGIDGVIVGSAL 223 (229)
T ss_dssp HHHHSSEEEEESS--SHHHHHHHHHTTECEEEESHHH
T ss_pred HHHcCCCEEEecCCCCHHHHHHHHHCCCcEEEEehHh
Confidence 3334699999999999999999999999999999988
|
Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F .... |
| >COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00018 Score=70.22 Aligned_cols=180 Identities=22% Similarity=0.221 Sum_probs=116.5
Q ss_pred EEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCCCCCCcccCCceEEeEeeccchhHHHHHHHHHHc
Q psy1056 262 SAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQA 341 (590)
Q Consensus 262 tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~ 341 (590)
++..+.++ +..+.+.+.+...+=+||=+|...|--...++++...... ..++-++.-+. ..+.++.++++
T Consensus 27 ~~y~~~P~-~~a~~~~~~Ga~~lHlVDLdgA~~g~~~n~~~i~~i~~~~-----~~~vQvGGGIR----s~~~v~~ll~~ 96 (241)
T COG0106 27 TVYSDDPL-EVAKKWSDQGAEWLHLVDLDGAKAGGPRNLEAIKEILEAT-----DVPVQVGGGIR----SLEDVEALLDA 96 (241)
T ss_pred eEecCCHH-HHHHHHHHcCCcEEEEeeccccccCCcccHHHHHHHHHhC-----CCCEEeeCCcC----CHHHHHHHHHC
Confidence 34444444 4455677799999999998887776666666665543221 12333343332 45778889999
Q ss_pred CCcEEEEecCC-CchhhHHHHHHHHHHhCCCceEEe---c--cc-----------cCcHHHHHHHHCCCCEEEEcccccc
Q psy1056 342 GVDVVILDSSQ-GNSIYQIEMIKFIKKEYPDMQVIG---G--NV-----------LFGYQPRATLLNFIYQIEMIKFIKK 404 (590)
Q Consensus 342 gad~i~V~~~~-G~~~~~l~~i~~i~~~~~~vpvi~---g--~v-----------~s~~~a~~l~~~Gvd~i~v~~~~~~ 404 (590)
|++.+.+-+.- -+ .+.++.+.+.|++-.++. + .+ .-.+-++++.+.|+..| ++|.-
T Consensus 97 G~~rViiGt~av~~----p~~v~~~~~~~g~rivv~lD~r~g~vav~GW~e~s~~~~~~l~~~~~~~g~~~i---i~TdI 169 (241)
T COG0106 97 GVARVIIGTAAVKN----PDLVKELCEEYGDRIVVALDARDGKVAVSGWQEDSGVELEELAKRLEEVGLAHI---LYTDI 169 (241)
T ss_pred CCCEEEEecceecC----HHHHHHHHHHcCCcEEEEEEccCCccccccccccccCCHHHHHHHHHhcCCCeE---EEEec
Confidence 99998875432 22 456677777786433331 1 11 12466788999999998 44433
Q ss_pred cCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHc-CCCEEEECccc
Q psy1056 405 EYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALAL-GASTAMMGSLL 462 (590)
Q Consensus 405 ~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalal-GA~~v~~g~~l 462 (590)
.++|.. -|+......++.+. .++|+|+||||++-.|+.++..+ |...|.+|++|
T Consensus 170 ~~DGtl-~G~n~~l~~~l~~~---~~ipviaSGGv~s~~Di~~l~~~~G~~GvIvG~AL 224 (241)
T COG0106 170 SRDGTL-SGPNVDLVKELAEA---VDIPVIASGGVSSLDDIKALKELSGVEGVIVGRAL 224 (241)
T ss_pred cccccc-CCCCHHHHHHHHHH---hCcCEEEecCcCCHHHHHHHHhcCCCcEEEEehHH
Confidence 211100 13344444455443 47999999999999999999999 99999999988
|
|
| >PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.2e-05 Score=82.10 Aligned_cols=74 Identities=27% Similarity=0.443 Sum_probs=69.1
Q ss_pred CCcchHHHHHHHHHc--CCcEEEEcCCCCchHHHHHHHHHhhhcCCCcccccccccchHHHHHHHHHhcccccccc
Q psy1056 134 TREADKYRLKLLSQA--GVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGLRVGS 207 (590)
Q Consensus 134 ~~~d~~~~~~~l~~~--~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~im~~~~~~~~~~~~a~~~m~~~~~v~~ 207 (590)
..+++++++..|+++ ++|+|++|++|||++.++++++++|+.+|..+++..|+.|.+..+++++..||++|||+
T Consensus 105 ~~~~d~er~~~L~~~~~g~D~iviD~AhGhs~~~i~~ik~ik~~~P~~~vIaGNV~T~e~a~~Li~aGAD~vKVGI 180 (346)
T PRK05096 105 TSDADFEKTKQILALSPALNFICIDVANGYSEHFVQFVAKAREAWPDKTICAGNVVTGEMVEELILSGADIVKVGI 180 (346)
T ss_pred CCHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHcCCCEEEEcc
Confidence 345789999999984 89999999999999999999999999999999999999998899999999999999996
|
|
| >cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream | Back alignment and domain information |
|---|
Probab=98.00 E-value=8.3e-06 Score=71.35 Aligned_cols=55 Identities=22% Similarity=0.405 Sum_probs=51.9
Q ss_pred cchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 248 LKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 248 ~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
.++.++|.+ ++.++++++++.++++.|.+++.+.+||+|++|+++|+||..||.+
T Consensus 58 ~~v~dim~~--~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~ 112 (113)
T cd04597 58 PRVRDVINR--KPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE 112 (113)
T ss_pred hhHHHhcCC--CCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence 679999998 8999999999999999999999999999999999999999999864
|
The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >PLN02591 tryptophan synthase | Back alignment and domain information |
|---|
Probab=97.99 E-value=5.9e-05 Score=75.28 Aligned_cols=134 Identities=16% Similarity=0.158 Sum_probs=86.2
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCC--------------------Cch-hhHHHHHHHHHHhCCCceEEe---cccc----
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQ--------------------GNS-IYQIEMIKFIKKEYPDMQVIG---GNVL---- 380 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~--------------------G~~-~~~l~~i~~i~~~~~~vpvi~---g~v~---- 380 (590)
+...+.+..+.++|+|++.+-.+. |.. ..+++.++.+++.. ++|+++ .|..
T Consensus 16 e~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~-~~p~ilm~Y~N~i~~~G 94 (250)
T PLN02591 16 DTTAEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQL-SCPIVLFTYYNPILKRG 94 (250)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCC-CCCEEEEecccHHHHhH
Confidence 345677889999999999986532 221 34567778887553 677552 2332
Q ss_pred CcHHHHHHHHCCCCEEEE--------------------------ccccccc--C------C---------Ccccccc-ch
Q psy1056 381 FGYQPRATLLNFIYQIEM--------------------------IKFIKKE--Y------P---------DMQVIGR-NG 416 (590)
Q Consensus 381 s~~~a~~l~~~Gvd~i~v--------------------------~~~~~~~--~------~---------~~~~~g~-~~ 416 (590)
-..-.+++.++|+|++.+ +..+... + + |.+|... ..
T Consensus 95 ~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~~GvTG~~~~~~ 174 (250)
T PLN02591 95 IDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFVYLVSSTGVTGARASVS 174 (250)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEEeeCCCCcCCCcCCc
Confidence 223367788899999977 1111100 0 0 1233221 22
Q ss_pred hHHHHHHHHHh-cCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 417 TAVYRVAEYAS-RRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 417 ~~l~~~~~~~~-~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
..+.+..+.++ ..++|++...||+++.|+.+++.+|||+|.+|+.|.
T Consensus 175 ~~~~~~i~~vk~~~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGSalV 222 (250)
T PLN02591 175 GRVESLLQELKEVTDKPVAVGFGISKPEHAKQIAGWGADGVIVGSAMV 222 (250)
T ss_pred hhHHHHHHHHHhcCCCceEEeCCCCCHHHHHHHHhcCCCEEEECHHHH
Confidence 33444222232 347999999999999999999999999999999884
|
|
| >PRK13957 indole-3-glycerol-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00014 Score=72.06 Aligned_cols=133 Identities=15% Similarity=0.120 Sum_probs=94.2
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEecccc-CcHHHHHHHHCCCCEEEE----------
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVL-FGYQPRATLLNFIYQIEM---------- 398 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~-s~~~a~~l~~~Gvd~i~v---------- 398 (590)
+..+.+....+.|+..+.|.+-..+..|-++.++.++... ++|++.|+.. ++.+..++..+|||+|-+
T Consensus 62 d~~~~A~~y~~~GA~aISVlTe~~~F~Gs~~~l~~v~~~v-~~PvL~KDFIid~~QI~ea~~~GADavLLI~~~L~~~~l 140 (247)
T PRK13957 62 HPVQIAKTYETLGASAISVLTDQSYFGGSLEDLKSVSSEL-KIPVLRKDFILDEIQIREARAFGASAILLIVRILTPSQI 140 (247)
T ss_pred CHHHHHHHHHHCCCcEEEEEcCCCcCCCCHHHHHHHHHhc-CCCEEeccccCCHHHHHHHHHcCCCEEEeEHhhCCHHHH
Confidence 4567788889999999999886655556678888888887 7899988766 999999999999999965
Q ss_pred ----------------cccccccCC----------Ccccccc-chhH----HHHHHHHHhcCCCcEEecCCCCCHHHHHH
Q psy1056 399 ----------------IKFIKKEYP----------DMQVIGR-NGTA----VYRVAEYASRRGVPVIADGGVQSVGHVMK 447 (590)
Q Consensus 399 ----------------~~~~~~~~~----------~~~~~g~-~~~~----l~~~~~~~~~~~v~iia~GGi~~~~di~k 447 (590)
.+++..+.. |...+.. |.+. ..++..... .++.+|+.+||.|+.|+.+
T Consensus 141 ~~l~~~a~~lGle~LVEVh~~~El~~a~~~ga~iiGINnRdL~t~~vd~~~~~~L~~~ip-~~~~~IsESGI~t~~d~~~ 219 (247)
T PRK13957 141 KSFLKHASSLGMDVLVEVHTEDEAKLALDCGAEIIGINTRDLDTFQIHQNLVEEVAAFLP-PNIVKVGESGIESRSDLDK 219 (247)
T ss_pred HHHHHHHHHcCCceEEEECCHHHHHHHHhCCCCEEEEeCCCCccceECHHHHHHHHhhCC-CCcEEEEcCCCCCHHHHHH
Confidence 111100000 1222333 3322 223333333 2577899999999999998
Q ss_pred HHHcCCCEEEECccccCC
Q psy1056 448 ALALGASTAMMGSLLAGT 465 (590)
Q Consensus 448 alalGA~~v~~g~~l~~~ 465 (590)
.... ||+|.+|+.|+.+
T Consensus 220 l~~~-~davLvG~~lm~~ 236 (247)
T PRK13957 220 FRKL-VDAALIGTYFMEK 236 (247)
T ss_pred HHHh-CCEEEECHHHhCC
Confidence 7765 9999999988654
|
|
| >PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00014 Score=72.38 Aligned_cols=174 Identities=16% Similarity=0.115 Sum_probs=108.9
Q ss_pred CHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCCCCCCcccCCceEEeEeeccchhHHHHHHHHHHcCCcEEE
Q psy1056 268 SLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVVI 347 (590)
Q Consensus 268 ~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~gad~i~ 347 (590)
...+..+.+.+.+.+.+-|+|=++..-|--...++++...... .++.++..+ ...+.++.+++.|++.++
T Consensus 31 dP~~~A~~~~~~ga~~lhivDLd~a~~g~~~n~~~i~~i~~~~------~~v~vGGGI----rs~e~~~~~l~~Ga~rvv 100 (241)
T PRK14114 31 DPAELVEKLIEEGFTLIHVVDLSKAIENSVENLPVLEKLSEFA------EHIQIGGGI----RSLDYAEKLRKLGYRRQI 100 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCcccCCcchHHHHHHHHhhc------CcEEEecCC----CCHHHHHHHHHCCCCEEE
Confidence 4556677788899999999997766666666666666554321 123333333 345778888999999988
Q ss_pred EecCCCchhhHHHHHHHHHHhCCCceEE---e--cccc----------C-cHHHHHHHHCCCCEEEEcccccccCCCccc
Q psy1056 348 LDSSQGNSIYQIEMIKFIKKEYPDMQVI---G--GNVL----------F-GYQPRATLLNFIYQIEMIKFIKKEYPDMQV 411 (590)
Q Consensus 348 V~~~~G~~~~~l~~i~~i~~~~~~vpvi---~--g~v~----------s-~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~ 411 (590)
+.+.--.. .+.++.+. .|++-.++ + |.+. + .+-++++.+.|+..|.+ +.-.++| +.
T Consensus 101 igT~a~~~---p~~l~~~~-~~~~~ivvslD~k~g~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~---tdI~rdG-t~ 172 (241)
T PRK14114 101 VSSKVLED---PSFLKFLK-EIDVEPVFSLDTRGGKVAFKGWLAEEEIDPVSLLKRLKEYGLEEIVH---TEIEKDG-TL 172 (241)
T ss_pred ECchhhCC---HHHHHHHH-HhCCCEEEEEEccCCEEeeCCCeecCCCCHHHHHHHHHhcCCCEEEE---Eeechhh-cC
Confidence 86632212 23344442 24322122 1 1111 2 34478888899998843 3222111 11
Q ss_pred cccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHc-----C-CCEEEECccc
Q psy1056 412 IGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALAL-----G-ASTAMMGSLL 462 (590)
Q Consensus 412 ~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalal-----G-A~~v~~g~~l 462 (590)
-|+..+.+..+++ ..++|+||+||+++..|+.++..+ | +++|.+|++|
T Consensus 173 ~G~d~el~~~l~~---~~~~pviasGGv~s~~Dl~~l~~~~~~~~g~v~gvivg~Al 226 (241)
T PRK14114 173 QEHDFSLTRKIAI---EAEVKVFAAGGISSENSLKTAQRVHRETNGLLKGVIVGRAF 226 (241)
T ss_pred CCcCHHHHHHHHH---HCCCCEEEECCCCCHHHHHHHHhcccccCCcEEEEEEehHH
Confidence 2333444444443 346999999999999999999998 6 9999999998
|
|
| >CHL00200 trpA tryptophan synthase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00012 Score=73.82 Aligned_cols=134 Identities=13% Similarity=0.150 Sum_probs=86.4
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCC--------------------Cch-hhHHHHHHHHHHhCCCceEE---ecccc----
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQ--------------------GNS-IYQIEMIKFIKKEYPDMQVI---GGNVL---- 380 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~--------------------G~~-~~~l~~i~~i~~~~~~vpvi---~g~v~---- 380 (590)
+...+.+..+.+.|+|++.+-.+- |.. ..+++.++.+++. +++|++ ..|..
T Consensus 29 ~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~-~~~p~vlm~Y~N~i~~~G 107 (263)
T CHL00200 29 VITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGE-IKAPIVIFTYYNPVLHYG 107 (263)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC-CCCCEEEEecccHHHHhC
Confidence 345677889999999999886422 221 3457778888855 467755 23332
Q ss_pred CcHHHHHHHHCCCCEEEE--------------------------ccccccc--C------C---------Ccccccc-ch
Q psy1056 381 FGYQPRATLLNFIYQIEM--------------------------IKFIKKE--Y------P---------DMQVIGR-NG 416 (590)
Q Consensus 381 s~~~a~~l~~~Gvd~i~v--------------------------~~~~~~~--~------~---------~~~~~g~-~~ 416 (590)
-..-.+.+.++|+|++.+ +..+... + + |++|..- ..
T Consensus 108 ~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~gFIY~vS~~GvTG~~~~~~ 187 (263)
T CHL00200 108 INKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPGCIYLVSTTGVTGLKTELD 187 (263)
T ss_pred HHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEcCCCCCCCCcccc
Confidence 233467888899999987 1111100 0 0 1222211 12
Q ss_pred hHHHHHHHHHh-cCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 417 TAVYRVAEYAS-RRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 417 ~~l~~~~~~~~-~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
..+.+..+..+ ..+.|+..++||+++.++.+....|||+|.+|+.|.
T Consensus 188 ~~~~~~i~~ir~~t~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGSalv 235 (263)
T CHL00200 188 KKLKKLIETIKKMTNKPIILGFGISTSEQIKQIKGWNINGIVIGSACV 235 (263)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHhcCCCEEEECHHHH
Confidence 22333333332 347999999999999999999999999999999884
|
|
| >cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes | Back alignment and domain information |
|---|
Probab=97.92 E-value=2.9e-05 Score=70.08 Aligned_cols=49 Identities=14% Similarity=0.189 Sum_probs=45.6
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccC
Q psy1056 259 EIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRD 307 (590)
Q Consensus 259 ~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~ 307 (590)
+++++.+++++.+|++.|.++++..+||+|++|+++|++|..|+++...
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~ 50 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLF 50 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHh
Confidence 6789999999999999999999999999999999999999999987654
|
These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually |
| >cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2 | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00017 Score=75.84 Aligned_cols=134 Identities=17% Similarity=0.119 Sum_probs=86.8
Q ss_pred hHHHHHHHHHHcCCcEEEEecCC--------------------Cc----hhhHHHHHHHHHHhCC-CceEEecc------
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQ--------------------GN----SIYQIEMIKFIKKEYP-DMQVIGGN------ 378 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~--------------------G~----~~~~l~~i~~i~~~~~-~vpvi~g~------ 378 (590)
...+.++.+.++|.|.|.|+..+ |. ..+.++.++.+++..+ +.++.++-
T Consensus 150 ~~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~ 229 (338)
T cd04733 150 RFAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQ 229 (338)
T ss_pred HHHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcC
Confidence 44557778889999999998643 11 1445788999999874 56777642
Q ss_pred --ccCcHH----HHHHHHCCCCEEEEcccccccCCCcc---cccc-chhH--HHHHHHHHhcCCCcEEecCCCCCHHHHH
Q psy1056 379 --VLFGYQ----PRATLLNFIYQIEMIKFIKKEYPDMQ---VIGR-NGTA--VYRVAEYASRRGVPVIADGGVQSVGHVM 446 (590)
Q Consensus 379 --v~s~~~----a~~l~~~Gvd~i~v~~~~~~~~~~~~---~~g~-~~~~--l~~~~~~~~~~~v~iia~GGi~~~~di~ 446 (590)
..+.++ ++.|.++|+|+|.|+..+... .... .... .... +..+.+..+..++||++.|+|.++.++.
T Consensus 230 ~~g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~i~t~~~a~ 308 (338)
T cd04733 230 RGGFTEEDALEVVEALEEAGVDLVELSGGTYES-PAMAGAKKESTIAREAYFLEFAEKIRKVTKTPLMVTGGFRTRAAME 308 (338)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCC-ccccccccCCccccchhhHHHHHHHHHHcCCCEEEeCCCCCHHHHH
Confidence 124444 467778999999774332111 0000 0000 0000 1112222233579999999999999999
Q ss_pred HHHHcC-CCEEEECccccC
Q psy1056 447 KALALG-ASTAMMGSLLAG 464 (590)
Q Consensus 447 kalalG-A~~v~~g~~l~~ 464 (590)
++++.| ||+|++|++|..
T Consensus 309 ~~l~~g~aD~V~lgR~~ia 327 (338)
T cd04733 309 QALASGAVDGIGLARPLAL 327 (338)
T ss_pred HHHHcCCCCeeeeChHhhh
Confidence 999997 899999998853
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4 | Back alignment and domain information |
|---|
Probab=97.89 E-value=9.4e-05 Score=78.17 Aligned_cols=132 Identities=17% Similarity=0.106 Sum_probs=85.3
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCC--------------------c----hhhHHHHHHHHHHhCC-----CceEEec---
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQG--------------------N----SIYQIEMIKFIKKEYP-----DMQVIGG--- 377 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G--------------------~----~~~~l~~i~~i~~~~~-----~vpvi~g--- 377 (590)
...+.+..+.++|.|.|.|+.++| . ..+.++.++.+++..+ +.+|.++
T Consensus 145 ~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~ 224 (353)
T cd04735 145 AFGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSP 224 (353)
T ss_pred HHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEECc
Confidence 344567778889999999986431 1 1335688899998873 5555542
Q ss_pred -----cccCc----HHHHHHHHCCCCEEEEcccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHH
Q psy1056 378 -----NVLFG----YQPRATLLNFIYQIEMIKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMK 447 (590)
Q Consensus 378 -----~v~s~----~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~k 447 (590)
+..+. +-++.|.++|+|+|.|+....... ....+. .......+++... .++|||+.|||+++.++.+
T Consensus 225 ~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~--~~~~~~~~~~~~~~ik~~~~-~~iPVi~~Ggi~t~e~ae~ 301 (353)
T cd04735 225 EEPEEPGIRMEDTLALVDKLADKGLDYLHISLWDFDRK--SRRGRDDNQTIMELVKERIA-GRLPLIAVGSINTPDDALE 301 (353)
T ss_pred ccccCCCCCHHHHHHHHHHHHHcCCCEEEeccCccccc--cccCCcchHHHHHHHHHHhC-CCCCEEEECCCCCHHHHHH
Confidence 11133 344677789999998854221110 000011 1112223333332 2689999999999999999
Q ss_pred HHHcCCCEEEECccccC
Q psy1056 448 ALALGASTAMMGSLLAG 464 (590)
Q Consensus 448 alalGA~~v~~g~~l~~ 464 (590)
+++.|||+|++|+++..
T Consensus 302 ~l~~gaD~V~~gR~lia 318 (353)
T cd04735 302 ALETGADLVAIGRGLLV 318 (353)
T ss_pred HHHcCCChHHHhHHHHh
Confidence 99999999999998853
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >PRK13523 NADPH dehydrogenase NamA; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0001 Score=77.11 Aligned_cols=131 Identities=17% Similarity=0.052 Sum_probs=85.7
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCC--------------------c----hhhHHHHHHHHHHhCCCceEEecc-------
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQG--------------------N----SIYQIEMIKFIKKEYPDMQVIGGN------- 378 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G--------------------~----~~~~l~~i~~i~~~~~~vpvi~g~------- 378 (590)
...+.+..+.++|.|.+.|+..+| . ..+..+.++.+++.. +.|+.++=
T Consensus 143 ~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~-~~~v~vRis~~d~~~ 221 (337)
T PRK13523 143 AFKQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVW-DGPLFVRISASDYHP 221 (337)
T ss_pred HHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhc-CCCeEEEecccccCC
Confidence 344567788889999999986542 1 134568889999887 56666431
Q ss_pred -ccCcH----HHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcC-
Q psy1056 379 -VLFGY----QPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALG- 452 (590)
Q Consensus 379 -v~s~~----~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalG- 452 (590)
..+.+ -++.|.++|+|+|.|+..+..........|+.......+++ ..++|||+.|+|+++.++.++|+-|
T Consensus 222 ~G~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~---~~~ipVi~~G~i~~~~~a~~~l~~g~ 298 (337)
T PRK13523 222 GGLTVQDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIRE---HANIATGAVGLITSGAQAEEILQNNR 298 (337)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccHHHHHHHHh---hcCCcEEEeCCCCCHHHHHHHHHcCC
Confidence 12444 34677789999998854432110000001211112222332 3469999999999999999999988
Q ss_pred CCEEEECccccC
Q psy1056 453 ASTAMMGSLLAG 464 (590)
Q Consensus 453 A~~v~~g~~l~~ 464 (590)
||+|++|+++..
T Consensus 299 ~D~V~~gR~~ia 310 (337)
T PRK13523 299 ADLIFIGRELLR 310 (337)
T ss_pred CChHHhhHHHHh
Confidence 999999998853
|
|
| >cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3 | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0002 Score=75.31 Aligned_cols=132 Identities=17% Similarity=0.084 Sum_probs=84.4
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCc------------------------hhhHHHHHHHHHHhCC-CceEEec----c--
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGN------------------------SIYQIEMIKFIKKEYP-DMQVIGG----N-- 378 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~------------------------~~~~l~~i~~i~~~~~-~vpvi~g----~-- 378 (590)
+..+.+..+.++|.|.+.|+.++|. ...+++.++.+++..+ +.++.++ +
T Consensus 142 ~f~~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~ 221 (343)
T cd04734 142 AFADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDEDT 221 (343)
T ss_pred HHHHHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhhcc
Confidence 4445677778899999999985531 1334688899998873 4555432 1
Q ss_pred --ccCc----HHHHHHHHCC-CCEEEEcccccccC--------CCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHH
Q psy1056 379 --VLFG----YQPRATLLNF-IYQIEMIKFIKKEY--------PDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVG 443 (590)
Q Consensus 379 --v~s~----~~a~~l~~~G-vd~i~v~~~~~~~~--------~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~ 443 (590)
..+. +-++.|.++| +|+|.|+....... +.+.+-++.......+.+ ..++|||+.|||+++.
T Consensus 222 ~~G~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~---~~~ipvi~~G~i~~~~ 298 (343)
T cd04734 222 EGGLSPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQ---AVDLPVFHAGRIRDPA 298 (343)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHH---HcCCCEEeeCCCCCHH
Confidence 1233 4446777798 89998843322110 000000111112222332 3469999999999999
Q ss_pred HHHHHHHcC-CCEEEECccccC
Q psy1056 444 HVMKALALG-ASTAMMGSLLAG 464 (590)
Q Consensus 444 di~kalalG-A~~v~~g~~l~~ 464 (590)
++.++++-| ||+|++|+++..
T Consensus 299 ~~~~~l~~~~~D~V~~gR~~la 320 (343)
T cd04734 299 EAEQALAAGHADMVGMTRAHIA 320 (343)
T ss_pred HHHHHHHcCCCCeeeecHHhHh
Confidence 999999987 999999998853
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase. |
| >cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00046 Score=66.14 Aligned_cols=81 Identities=17% Similarity=0.062 Sum_probs=53.0
Q ss_pred ccCcHHHHHHHHCCCCEEEEccc-ccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEE
Q psy1056 379 VLFGYQPRATLLNFIYQIEMIKF-IKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTA 456 (590)
Q Consensus 379 v~s~~~a~~l~~~Gvd~i~v~~~-~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v 456 (590)
+.+.++++++.+.|+|+|-++.. .+ ..+.+. ....+..+++.+...++|+++.||| +..++..++.+||+++
T Consensus 102 ~~t~~~~~~~~~~g~d~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~pv~a~GGi-~~~~i~~~~~~Ga~~i 175 (196)
T cd00564 102 THSLEEALRAEELGADYVGFGPVFPT-----PTKPGAGPPLGLELLREIAELVEIPVVAIGGI-TPENAAEVLAAGADGV 175 (196)
T ss_pred CCCHHHHHHHhhcCCCEEEECCccCC-----CCCCCCCCCCCHHHHHHHHHhCCCCEEEECCC-CHHHHHHHHHcCCCEE
Confidence 34677888888889998855211 11 111121 1122223333333346999999999 5799999999999999
Q ss_pred EECccccCC
Q psy1056 457 MMGSLLAGT 465 (590)
Q Consensus 457 ~~g~~l~~~ 465 (590)
.+|+.+...
T Consensus 176 ~~g~~i~~~ 184 (196)
T cd00564 176 AVISAITGA 184 (196)
T ss_pred EEehHhhcC
Confidence 999988543
|
TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions. |
| >PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00027 Score=69.82 Aligned_cols=131 Identities=17% Similarity=0.068 Sum_probs=82.8
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCchhh---HHHHHHHHHHhCCCceEEe-ccccCcHHHHHHHHCCCCEEEEccccc--
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNSIY---QIEMIKFIKKEYPDMQVIG-GNVLFGYQPRATLLNFIYQIEMIKFIK-- 403 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~~~---~l~~i~~i~~~~~~vpvi~-g~v~s~~~a~~l~~~Gvd~i~v~~~~~-- 403 (590)
+..+.++.+.+. ++.+++-.-.|...+ -.+.++.+.+.. ++|+.+ |++.|.++++++.++|++.+.+.-...
T Consensus 31 dp~~~a~~~~~~-~~~l~ivDldga~~g~~~n~~~i~~i~~~~-~~pv~~gGGIrs~edv~~l~~~G~~~vivGtaa~~~ 108 (228)
T PRK04128 31 DPVEIALRFSEY-VDKIHVVDLDGAFEGKPKNLDVVKNIIRET-GLKVQVGGGLRTYESIKDAYEIGVENVIIGTKAFDL 108 (228)
T ss_pred CHHHHHHHHHHh-CCEEEEEECcchhcCCcchHHHHHHHHhhC-CCCEEEcCCCCCHHHHHHHHHCCCCEEEECchhcCH
Confidence 456677777776 886655333322211 256777777764 788885 577799999999999999887600000
Q ss_pred -----------c-----c-CCC---cccccc-c---h-hHHHHHH---------------------HHHhc-CCCcEEec
Q psy1056 404 -----------K-----E-YPD---MQVIGR-N---G-TAVYRVA---------------------EYASR-RGVPVIAD 436 (590)
Q Consensus 404 -----------~-----~-~~~---~~~~g~-~---~-~~l~~~~---------------------~~~~~-~~v~iia~ 436 (590)
+ . +++ ..||-- + + +.+..+. +..+. .++|+||+
T Consensus 109 ~~l~~~~~~~g~ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~~~~ii~t~i~~dGt~~G~d~l~~~~~~~pvias 188 (228)
T PRK04128 109 EFLEKVTSEFEGITVSLDVKGGRIAVKGWLEESSIKVEDAYEMLKNYVNRFIYTSIERDGTLTGIEEIERFWGDEEFIYA 188 (228)
T ss_pred HHHHHHHHHcCCEEEEEEccCCeEecCCCeEcCCCCHHHHHHHHHHHhCEEEEEeccchhcccCHHHHHHhcCCCCEEEE
Confidence 0 0 001 122311 1 1 1111110 11111 35899999
Q ss_pred CCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 437 GGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 437 GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
|||++..|+.++..+|+++|.+|++|
T Consensus 189 GGv~~~~Dl~~l~~~g~~gvivg~al 214 (228)
T PRK04128 189 GGVSSAEDVKKLAEIGFSGVIIGKAL 214 (228)
T ss_pred CCCCCHHHHHHHHHCCCCEEEEEhhh
Confidence 99999999999999999999999998
|
|
| >TIGR00734 hisAF_rel hisA/hisF family protein | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00028 Score=69.42 Aligned_cols=131 Identities=13% Similarity=0.212 Sum_probs=83.0
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCc--hhhHHHHHHHHHHhCCCceEEe-ccccCcHHHHHHHH--CCCCEEEE-----
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQGN--SIYQIEMIKFIKKEYPDMQVIG-GNVLFGYQPRATLL--NFIYQIEM----- 398 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G~--~~~~l~~i~~i~~~~~~vpvi~-g~v~s~~~a~~l~~--~Gvd~i~v----- 398 (590)
.+..+.++.+.+.|++.+++-.-.+. ...-.+.++.+.+.. |+.+ |++.|.++++++.. .|++-+.+
T Consensus 36 ~dP~~~a~~~~~~g~~~l~ivDLd~~~~~~~n~~~i~~i~~~~---~v~vgGGirs~e~~~~~~~~l~~a~rvvigT~a~ 112 (221)
T TIGR00734 36 SSPDDAAKVIEEIGARFIYIADLDRIVGLGDNFSLLSKLSKRV---ELIADCGVRSPEDLETLPFTLEFASRVVVATETL 112 (221)
T ss_pred CCHHHHHHHHHHcCCCEEEEEEcccccCCcchHHHHHHHHhhC---cEEEcCccCCHHHHHHHHhhhccceEEeecChhh
Confidence 35567888888999998887543322 112356777777764 5544 56669999998865 25887755
Q ss_pred -------------cccccccCCCcccc--------------------------cc-chhHHHHHHHHHhcCCCcEEecCC
Q psy1056 399 -------------IKFIKKEYPDMQVI--------------------------GR-NGTAVYRVAEYASRRGVPVIADGG 438 (590)
Q Consensus 399 -------------~~~~~~~~~~~~~~--------------------------g~-~~~~l~~~~~~~~~~~v~iia~GG 438 (590)
++.....+-...+| |. +--.+..+.+.++..++|+|++||
T Consensus 113 ~~p~~l~~~~~vvslD~~~g~v~~~g~~~~~~~~~~~~~~~g~~ii~tdI~~dGt~~G~d~eli~~i~~~~~~pvia~GG 192 (221)
T TIGR00734 113 DITELLRECYTVVSLDFKEKFLDASGLFESLEEVRDFLNSFDYGLIVLDIHSVGTMKGPNLELLTKTLELSEHPVMLGGG 192 (221)
T ss_pred CCHHHHHHhhhEEEEEeECCccccccccccHHHHHHHHHhcCCEEEEEECCccccCCCCCHHHHHHHHhhCCCCEEEeCC
Confidence 11110000000111 11 000122233444445799999999
Q ss_pred CCCHHHHHHHHHcCCCEEEECccc
Q psy1056 439 VQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 439 i~~~~di~kalalGA~~v~~g~~l 462 (590)
|++..|+.+++.+||++|.+|++|
T Consensus 193 i~s~ed~~~l~~~Ga~~vivgsal 216 (221)
T TIGR00734 193 ISGVEDLELLKEMGVSAVLVATAV 216 (221)
T ss_pred CCCHHHHHHHHHCCCCEEEEhHHh
Confidence 999999999999999999999988
|
This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown. |
| >cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00035 Score=69.42 Aligned_cols=172 Identities=19% Similarity=0.055 Sum_probs=102.2
Q ss_pred CHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCCCCCCcccCCceEEeEeeccchhHHHHHHHHHHcCCcEEE
Q psy1056 268 SLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVVI 347 (590)
Q Consensus 268 ~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~gad~i~ 347 (590)
...+..+.+.+.+.+.+-|+|=++. .|-=...++++..... ...++.++..+. ..+.++.++..|++-++
T Consensus 36 dp~~~a~~~~~~g~~~l~i~DLd~~-~~~~~n~~~i~~i~~~-----~~~~v~vgGGir----~~edv~~~l~~Ga~~vi 105 (233)
T cd04723 36 DPLDVARAYKELGFRGLYIADLDAI-MGRGDNDEAIRELAAA-----WPLGLWVDGGIR----SLENAQEWLKRGASRVI 105 (233)
T ss_pred CHHHHHHHHHHCCCCEEEEEeCccc-cCCCccHHHHHHHHHh-----CCCCEEEecCcC----CHHHHHHHHHcCCCeEE
Confidence 5667778888889999999985432 2322222333332211 112334444333 35777888899999888
Q ss_pred EecCCCchhhHHHHHHHHHHhCCC-ceEE---e--ccc------cCcH-HHHHHHHCCCCEEEE-cccccccCCCccccc
Q psy1056 348 LDSSQGNSIYQIEMIKFIKKEYPD-MQVI---G--GNV------LFGY-QPRATLLNFIYQIEM-IKFIKKEYPDMQVIG 413 (590)
Q Consensus 348 V~~~~G~~~~~l~~i~~i~~~~~~-vpvi---~--g~v------~s~~-~a~~l~~~Gvd~i~v-~~~~~~~~~~~~~~g 413 (590)
+.+.--.. +.++.+.+.|++ -.++ + +.+ .++. .++.+.+. ++.+.+ .+.. . -+..|
T Consensus 106 igt~~~~~----~~~~~~~~~~~~~~iivslD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~li~~di~~--~---G~~~g 175 (233)
T cd04723 106 VGTETLPS----DDDEDRLAALGEQRLVLSLDFRGGQLLKPTDFIGPEELLRRLAKW-PEELIVLDIDR--V---GSGQG 175 (233)
T ss_pred Ecceeccc----hHHHHHHHhcCCCCeEEEEeccCCeeccccCcCCHHHHHHHHHHh-CCeEEEEEcCc--c---ccCCC
Confidence 86543211 344555555543 2222 1 111 2343 34566667 887744 2211 1 11223
Q ss_pred cchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 414 RNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 414 ~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
.....+.++. ...++|++++|||++..|+.+++.+||++|.+|++|
T Consensus 176 ~~~~~~~~i~---~~~~ipvi~~GGi~s~edi~~l~~~G~~~vivGsal 221 (233)
T cd04723 176 PDLELLERLA---ARADIPVIAAGGVRSVEDLELLKKLGASGALVASAL 221 (233)
T ss_pred cCHHHHHHHH---HhcCCCEEEeCCCCCHHHHHHHHHcCCCEEEEehHH
Confidence 3333333443 344699999999999999999999999999999988
|
The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl |
| >COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.85 E-value=3.9e-05 Score=82.53 Aligned_cols=63 Identities=22% Similarity=0.319 Sum_probs=50.8
Q ss_pred HHHHHHHhhhccc-----CccccCCEEECCCCCHHHHHHHHHH-----cCccceeeccCCcccceeEEEEeccccccc
Q psy1056 10 YQANEVLKVKKYK-----HGFIRDPVCIAPSTTLGKVLQMKKQ-----HGFCGFPVTENGKLGEKLLGIVTSRDVDFL 77 (590)
Q Consensus 10 ~~~~~~~~vk~~~-----~~m~~~~vtv~~~~ti~eA~~lM~~-----~~i~~lpVvd~~~~~~~lvGivT~~Did~l 77 (590)
.+...++..-++. .+|+.+.+++.++.|+.+|+..+++ ..+..+.|+|+. +++.|+++.+ +++
T Consensus 118 ~~r~~v~~~l~y~e~taG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~---~~L~Gvvsl~--~Ll 190 (451)
T COG2239 118 EERARVRQLLSYPEDTAGRIMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEK---GKLLGVVSLR--DLL 190 (451)
T ss_pred HHHHHHHHhcCCChhhhhccceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCc---cceEEEeeHH--HHh
Confidence 3444455444443 3899999999999999999999984 557899999987 7999999999 665
|
|
| >TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00032 Score=69.98 Aligned_cols=175 Identities=15% Similarity=0.002 Sum_probs=104.7
Q ss_pred CHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCCCCCCcccCCceEEeEeeccchhHHHHHHHHHHcCCcEEE
Q psy1056 268 SLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVVI 347 (590)
Q Consensus 268 ~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~gad~i~ 347 (590)
++.++.+.+.+.+.+.+-|+|-++.. |-=...++++...... .-++.++.-+ ...+.++.+++.|++.++
T Consensus 32 ~p~~~a~~~~~~g~~~lhivDLd~a~-g~~~n~~~i~~i~~~~-----~~~v~vgGGI----rs~e~~~~~l~~Ga~~vv 101 (243)
T TIGR01919 32 SLESAAKWWEQGGAEWIHLVDLDAAF-GGGNNEMMLEEVVKLL-----VVVEELSGGR----RDDSSLRAALTGGRARVN 101 (243)
T ss_pred CHHHHHHHHHhCCCeEEEEEECCCCC-CCcchHHHHHHHHHHC-----CCCEEEcCCC----CCHHHHHHHHHcCCCEEE
Confidence 44567777888888889999876544 5545555555543211 1122333333 345778888999999998
Q ss_pred EecCCCchhhHHHHHHHHHHhCCCceEE---ec-c----c--------c---CcHHHHHHHHCCCCEEEEcccccccCCC
Q psy1056 348 LDSSQGNSIYQIEMIKFIKKEYPDMQVI---GG-N----V--------L---FGYQPRATLLNFIYQIEMIKFIKKEYPD 408 (590)
Q Consensus 348 V~~~~G~~~~~l~~i~~i~~~~~~vpvi---~g-~----v--------~---s~~~a~~l~~~Gvd~i~v~~~~~~~~~~ 408 (590)
+.+.--.. .+.++.+.+.|++-.++ ++ + . . -.+-++++.+.|+..|.+ +.-.++|
T Consensus 102 igT~a~~~---p~~~~~~~~~~g~~ivvslD~k~~g~~~~v~~~Gw~~~~~~~~~~~~~~~~~g~~~ii~---tdI~~dG 175 (243)
T TIGR01919 102 GGTAALEN---PWWAAAVIRYGGDIVAVGLDVLEDGEWHTLGNRGWSDGGGDLEVLERLLDSGGCSRVVV---TDSKKDG 175 (243)
T ss_pred ECchhhCC---HHHHHHHHHHccccEEEEEEEecCCceEEEECCCeecCCCcHHHHHHHHHhCCCCEEEE---EecCCcc
Confidence 86642222 23444455555432111 12 1 1 0 225567888899998843 2222111
Q ss_pred ccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHH---HcCCCEEEECccc
Q psy1056 409 MQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKAL---ALGASTAMMGSLL 462 (590)
Q Consensus 409 ~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kal---alGA~~v~~g~~l 462 (590)
+.-|+....+..+++ ..++|+|++||+++..|+.+.- .+|+++|.+|++|
T Consensus 176 -t~~G~d~~l~~~l~~---~~~~pviasGGv~s~eDl~~l~~l~~~Gv~gvivg~Al 228 (243)
T TIGR01919 176 -LSGGPNELLLEVVAA---RTDAIVAASGGSSLLDDLRAIKYLDEGGVSVAIGGKLL 228 (243)
T ss_pred -cCCCcCHHHHHHHHh---hCCCCEEEECCcCCHHHHHHHHhhccCCeeEEEEhHHH
Confidence 112333333334443 3469999999999999998763 4599999999988
|
This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent. |
| >PRK13111 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00029 Score=70.77 Aligned_cols=134 Identities=16% Similarity=0.203 Sum_probs=85.5
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCC--------------------Cch-hhHHHHHHHHHHhCCCceEEe---cccc----
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQ--------------------GNS-IYQIEMIKFIKKEYPDMQVIG---GNVL---- 380 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~--------------------G~~-~~~l~~i~~i~~~~~~vpvi~---g~v~---- 380 (590)
+...+.+..+.+.|+|++.+-.+- |.. ..+++.++.+++..+++|+++ .|..
T Consensus 26 ~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~vlm~Y~N~i~~~G 105 (258)
T PRK13111 26 ETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIVLMTYYNPIFQYG 105 (258)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecccHHhhcC
Confidence 345677889999999999886532 222 345778888886656778552 2332
Q ss_pred CcHHHHHHHHCCCCEEEE--------------------------ccccc--ccC------C---------Ccccccc-ch
Q psy1056 381 FGYQPRATLLNFIYQIEM--------------------------IKFIK--KEY------P---------DMQVIGR-NG 416 (590)
Q Consensus 381 s~~~a~~l~~~Gvd~i~v--------------------------~~~~~--~~~------~---------~~~~~g~-~~ 416 (590)
-..-.+.+.++|+|++.+ +..+. |.+ . |.+|+.- ..
T Consensus 106 ~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s~gfIY~vs~~GvTG~~~~~~ 185 (258)
T PRK13111 106 VERFAADAAEAGVDGLIIPDLPPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHASGFVYYVSRAGVTGARSADA 185 (258)
T ss_pred HHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEeCCCCCCcccCCC
Confidence 223477888899999977 11110 000 0 1233211 11
Q ss_pred hHHHH-HHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 417 TAVYR-VAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 417 ~~l~~-~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
..+.+ +....+..++|++..|||+|+.|+.+++.. ||+|.+|+.|.
T Consensus 186 ~~~~~~i~~vk~~~~~pv~vGfGI~~~e~v~~~~~~-ADGviVGSaiv 232 (258)
T PRK13111 186 ADLAELVARLKAHTDLPVAVGFGISTPEQAAAIAAV-ADGVIVGSALV 232 (258)
T ss_pred ccHHHHHHHHHhcCCCcEEEEcccCCHHHHHHHHHh-CCEEEEcHHHH
Confidence 22332 233322347999999999999999999876 99999999984
|
|
| >cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00034 Score=73.42 Aligned_cols=127 Identities=15% Similarity=0.093 Sum_probs=84.8
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCC--------------------c----hhhHHHHHHHHHHhCCCceEEeccc------
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQG--------------------N----SIYQIEMIKFIKKEYPDMQVIGGNV------ 379 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G--------------------~----~~~~l~~i~~i~~~~~~vpvi~g~v------ 379 (590)
...+.+..+.++|.|.|.|+..+| . .++.++.++.+|+..+.-++.++=-
T Consensus 153 ~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~vRis~~~~~~ 232 (338)
T cd02933 153 DFRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGTFN 232 (338)
T ss_pred HHHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEEECccccCC
Confidence 344567788889999999986542 1 1445788999998874325554311
Q ss_pred -----cCc----HHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHH
Q psy1056 380 -----LFG----YQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALA 450 (590)
Q Consensus 380 -----~s~----~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kala 450 (590)
.+. +-++.|.++|+|+|.|+...... .. -++.......+++. .++|||+.|||. +.++.++++
T Consensus 233 ~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~---~~-~~~~~~~~~~ik~~---~~ipvi~~G~i~-~~~a~~~l~ 304 (338)
T cd02933 233 DMGDSDPEATFSYLAKELNKRGLAYLHLVEPRVAG---NP-EDQPPDFLDFLRKA---FKGPLIAAGGYD-AESAEAALA 304 (338)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCcEEEEecCCCCC---cc-cccchHHHHHHHHH---cCCCEEEECCCC-HHHHHHHHH
Confidence 133 44577778999999884332211 11 11222223334433 469999999997 999999999
Q ss_pred cC-CCEEEECccccC
Q psy1056 451 LG-ASTAMMGSLLAG 464 (590)
Q Consensus 451 lG-A~~v~~g~~l~~ 464 (590)
.| ||+|++|++|..
T Consensus 305 ~g~~D~V~~gR~~la 319 (338)
T cd02933 305 DGKADLVAFGRPFIA 319 (338)
T ss_pred cCCCCEEEeCHhhhh
Confidence 87 999999998854
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes. |
| >PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00036 Score=66.86 Aligned_cols=110 Identities=16% Similarity=0.188 Sum_probs=76.1
Q ss_pred HHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCcccc
Q psy1056 333 NRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVI 412 (590)
Q Consensus 333 e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~ 412 (590)
+.++..++.|++++++ ++-+ .+.++. ++.. +.+.+.| +.|++++.++.++|+|++.+- .+.. . .
T Consensus 75 d~~~~A~~~gAdgv~~--p~~~----~~~~~~-~~~~-~~~~i~G-~~t~~e~~~A~~~Gadyv~~F--pt~~---~--~ 138 (187)
T PRK07455 75 EDLEEAIAAGAQFCFT--PHVD----PELIEA-AVAQ-DIPIIPG-ALTPTEIVTAWQAGASCVKVF--PVQA---V--G 138 (187)
T ss_pred HHHHHHHHcCCCEEEC--CCCC----HHHHHH-HHHc-CCCEEcC-cCCHHHHHHHHHCCCCEEEEC--cCCc---c--c
Confidence 6777888999999863 3322 222333 3333 5677788 899999999999999999661 1111 0 1
Q ss_pred ccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 413 GRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 413 g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
| ++-+..+..... ++|+++.||| |..++..-++.||++|.+|+.+.
T Consensus 139 G--~~~l~~~~~~~~--~ipvvaiGGI-~~~n~~~~l~aGa~~vav~s~i~ 184 (187)
T PRK07455 139 G--ADYIKSLQGPLG--HIPLIPTGGV-TLENAQAFIQAGAIAVGLSGQLF 184 (187)
T ss_pred C--HHHHHHHHhhCC--CCcEEEeCCC-CHHHHHHHHHCCCeEEEEehhcc
Confidence 1 222333333221 4999999999 88999999999999999998874
|
|
| >COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00031 Score=69.41 Aligned_cols=135 Identities=13% Similarity=0.127 Sum_probs=93.5
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEecccc-CcHHHHHHHHCCCCEEEE----------
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVL-FGYQPRATLLNFIYQIEM---------- 398 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~-s~~~a~~l~~~Gvd~i~v---------- 398 (590)
+..+.+....+.|+..+.|-+-..+..|-.+.+..+++.. +.|+..|+-. ++.+...+..+|+|+|-+
T Consensus 67 dp~~ia~~Ye~~GAa~iSVLTd~~~F~Gs~e~L~~v~~~v-~~PvL~KDFiiD~yQI~~Ar~~GADavLLI~~~L~~~~l 145 (254)
T COG0134 67 DPVEIAKAYEEGGAAAISVLTDPKYFQGSFEDLRAVRAAV-DLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQL 145 (254)
T ss_pred CHHHHHHHHHHhCCeEEEEecCccccCCCHHHHHHHHHhc-CCCeeeccCCCCHHHHHHHHHcCcccHHHHHHhcCHHHH
Confidence 3455777788889999999887766677788888888887 7999988655 888888888899998853
Q ss_pred ----------------cccccccCC----------Ccccccc-chhH----HHHHHHHHhcCCCcEEecCCCCCHHHHHH
Q psy1056 399 ----------------IKFIKKEYP----------DMQVIGR-NGTA----VYRVAEYASRRGVPVIADGGVQSVGHVMK 447 (590)
Q Consensus 399 ----------------~~~~~~~~~----------~~~~~g~-~~~~----l~~~~~~~~~~~v~iia~GGi~~~~di~k 447 (590)
.+++..+.. |...-.. +.+. -..++.... .++.+|+.+||.++.|+.+
T Consensus 146 ~el~~~A~~LGm~~LVEVh~~eEl~rAl~~ga~iIGINnRdL~tf~vdl~~t~~la~~~p-~~~~~IsESGI~~~~dv~~ 224 (254)
T COG0134 146 EELVDRAHELGMEVLVEVHNEEELERALKLGAKIIGINNRDLTTLEVDLETTEKLAPLIP-KDVILISESGISTPEDVRR 224 (254)
T ss_pred HHHHHHHHHcCCeeEEEECCHHHHHHHHhCCCCEEEEeCCCcchheecHHHHHHHHhhCC-CCcEEEecCCCCCHHHHHH
Confidence 000000000 0111112 2222 112222222 2477999999999999999
Q ss_pred HHHcCCCEEEECccccCCC
Q psy1056 448 ALALGASTAMMGSLLAGTS 466 (590)
Q Consensus 448 alalGA~~v~~g~~l~~~~ 466 (590)
....||+++.+|+.|+.++
T Consensus 225 l~~~ga~a~LVG~slM~~~ 243 (254)
T COG0134 225 LAKAGADAFLVGEALMRAD 243 (254)
T ss_pred HHHcCCCEEEecHHHhcCC
Confidence 9999999999999997554
|
|
| >COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0003 Score=69.94 Aligned_cols=134 Identities=16% Similarity=0.175 Sum_probs=88.1
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCC--------------------Cch-hhHHHHHHHHHHhCCCceEEe---cccc----
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQ--------------------GNS-IYQIEMIKFIKKEYPDMQVIG---GNVL---- 380 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~--------------------G~~-~~~l~~i~~i~~~~~~vpvi~---g~v~---- 380 (590)
+...+.+..|.++|+|++.+-.+- |.+ ...++.++.+++..+++|+++ .|..
T Consensus 31 e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~G 110 (265)
T COG0159 31 ETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIVLMTYYNPIFNYG 110 (265)
T ss_pred HHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHHHhh
Confidence 355678899999999999875421 322 445788899998877888873 2332
Q ss_pred CcHHHHHHHHCCCCEEEE--------------------------ccccccc--------CCC---------ccccccc-h
Q psy1056 381 FGYQPRATLLNFIYQIEM--------------------------IKFIKKE--------YPD---------MQVIGRN-G 416 (590)
Q Consensus 381 s~~~a~~l~~~Gvd~i~v--------------------------~~~~~~~--------~~~---------~~~~g~~-~ 416 (590)
-.+-.+++.++|+|++.| ++.++.. .+| .+|.-.. .
T Consensus 111 ie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~~a~GFiY~vs~~GvTG~~~~~~ 190 (265)
T COG0159 111 IEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTPDERLKKIAEAASGFIYYVSRMGVTGARNPVS 190 (265)
T ss_pred HHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEecccccCCCcccc
Confidence 223356788999999987 1111100 001 2222111 1
Q ss_pred hHHHHHHHHHhc-CCCcEEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 417 TAVYRVAEYASR-RGVPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 417 ~~l~~~~~~~~~-~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
..+.+..+..++ .++|+....||+++.++.+.... ||+|.+|+++.
T Consensus 191 ~~~~~~v~~vr~~~~~Pv~vGFGIs~~e~~~~v~~~-ADGVIVGSAiV 237 (265)
T COG0159 191 ADVKELVKRVRKYTDVPVLVGFGISSPEQAAQVAEA-ADGVIVGSAIV 237 (265)
T ss_pred hhHHHHHHHHHHhcCCCeEEecCcCCHHHHHHHHHh-CCeEEEcHHHH
Confidence 223333333332 47999999999999999999999 99999999884
|
|
| >COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00013 Score=69.94 Aligned_cols=104 Identities=19% Similarity=0.165 Sum_probs=72.3
Q ss_pred chhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCcccccc-chhHHHHHHHHHhcCCCc
Q psy1056 354 NSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVP 432 (590)
Q Consensus 354 ~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~ 432 (590)
+....++.-+.+.+. +-.|+...-.++-.|++|.++|+.++ +..+ ... -+|-|+ ++..|..+.+. .++|
T Consensus 115 D~~etl~Aae~Lv~e--GF~VlPY~~dD~v~arrLee~Gcaav-MPl~-aPI---GSg~G~~n~~~l~iiie~---a~VP 184 (262)
T COG2022 115 DPIETLKAAEQLVKE--GFVVLPYTTDDPVLARRLEEAGCAAV-MPLG-API---GSGLGLQNPYNLEIIIEE---ADVP 184 (262)
T ss_pred ChHHHHHHHHHHHhC--CCEEeeccCCCHHHHHHHHhcCceEe-cccc-ccc---cCCcCcCCHHHHHHHHHh---CCCC
Confidence 333344444444444 33444445558889999999999988 3111 111 123466 77666666554 3699
Q ss_pred EEecCCCCCHHHHHHHHHcCCCEEEECccccCCCC
Q psy1056 433 VIADGGVQSVGHVMKALALGASTAMMGSLLAGTSE 467 (590)
Q Consensus 433 iia~GGi~~~~di~kalalGA~~v~~g~~l~~~~e 467 (590)
||.|-||.+|.|++.|+.||+|+|++-++++.+..
T Consensus 185 viVDAGiG~pSdAa~aMElG~DaVL~NTAiA~A~D 219 (262)
T COG2022 185 VIVDAGIGTPSDAAQAMELGADAVLLNTAIARAKD 219 (262)
T ss_pred EEEeCCCCChhHHHHHHhcccceeehhhHhhccCC
Confidence 99999999999999999999999999999976643
|
|
| >cd00452 KDPG_aldolase KDPG and KHG aldolase | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0004 Score=66.72 Aligned_cols=110 Identities=16% Similarity=0.151 Sum_probs=76.5
Q ss_pred HHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccc
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQV 411 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~ 411 (590)
.+.++.+.+.|+++++. ++.+ .+.++..+. + +.+++. ++.|.+++.++.++|+|+|.+... ..
T Consensus 66 ~~~~~~a~~~Ga~~i~~--p~~~----~~~~~~~~~-~-~~~~i~-gv~t~~e~~~A~~~Gad~i~~~p~--~~------ 128 (190)
T cd00452 66 PEQADAAIAAGAQFIVS--PGLD----PEVVKAANR-A-GIPLLP-GVATPTEIMQALELGADIVKLFPA--EA------ 128 (190)
T ss_pred HHHHHHHHHcCCCEEEc--CCCC----HHHHHHHHH-c-CCcEEC-CcCCHHHHHHHHHCCCCEEEEcCC--cc------
Confidence 46778888999999973 3222 234444333 4 577776 677999999999999999955211 00
Q ss_pred cccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 412 IGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 412 ~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
. ....+..+.... .++|+++.||| |..++...++.||+++.+|+.+.
T Consensus 129 ~--g~~~~~~l~~~~--~~~p~~a~GGI-~~~n~~~~~~~G~~~v~v~s~i~ 175 (190)
T cd00452 129 V--GPAYIKALKGPF--PQVRFMPTGGV-SLDNAAEWLAAGVVAVGGGSLLP 175 (190)
T ss_pred c--CHHHHHHHHhhC--CCCeEEEeCCC-CHHHHHHHHHCCCEEEEEchhcc
Confidence 1 122222222211 14899999999 99999999999999999999883
|
This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources. |
| >PLN02460 indole-3-glycerol-phosphate synthase | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00036 Score=71.88 Aligned_cols=135 Identities=10% Similarity=0.086 Sum_probs=94.7
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHh-CCCceEEecc-ccCcHHHHHHHHCCCCEEEE---------
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKE-YPDMQVIGGN-VLFGYQPRATLLNFIYQIEM--------- 398 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~-~~~vpvi~g~-v~s~~~a~~l~~~Gvd~i~v--------- 398 (590)
+..+.++...+.|+.++.|.+-..+..|-.+.+..+++. . ++|++.|+ +.++.+..++..+|||+|-+
T Consensus 140 dp~~iA~~Ye~~GA~aISVLTd~~~F~Gs~e~L~~vr~~~v-~lPvLrKDFIID~yQI~eAr~~GADAVLLIaaiL~~~~ 218 (338)
T PLN02460 140 DPVEIAQAYEKGGAACLSVLTDEKYFQGSFENLEAIRNAGV-KCPLLCKEFIVDAWQIYYARSKGADAILLIAAVLPDLD 218 (338)
T ss_pred CHHHHHHHHHhCCCcEEEEecCcCcCCCCHHHHHHHHHcCC-CCCEeeccccCCHHHHHHHHHcCCCcHHHHHHhCCHHH
Confidence 456788888899999999988776667778888999987 5 79999998 45999999999999999854
Q ss_pred -----------------cccccccC----C-------Ccccccc-chhH-HHHHHHHHh--------cCCCcEEecCCCC
Q psy1056 399 -----------------IKFIKKEY----P-------DMQVIGR-NGTA-VYRVAEYAS--------RRGVPVIADGGVQ 440 (590)
Q Consensus 399 -----------------~~~~~~~~----~-------~~~~~g~-~~~~-l~~~~~~~~--------~~~v~iia~GGi~ 440 (590)
.+++..+. . |..+... |.+. +....+.+. ..++-+|+.+||.
T Consensus 219 L~~l~~~A~~LGme~LVEVH~~~ElerAl~~~ga~iIGINNRdL~Tf~vDl~~t~~L~~~~~~~~i~~~~~~~VsESGI~ 298 (338)
T PLN02460 219 IKYMLKICKSLGMAALIEVHDEREMDRVLGIEGVELIGINNRSLETFEVDISNTKKLLEGERGEQIREKGIIVVGESGLF 298 (338)
T ss_pred HHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCcceECHHHHHHHhhhccccccCCCCeEEEECCCCC
Confidence 11111000 0 0111122 2222 211222222 1245689999999
Q ss_pred CHHHHHHHHHcCCCEEEECccccCC
Q psy1056 441 SVGHVMKALALGASTAMMGSLLAGT 465 (590)
Q Consensus 441 ~~~di~kalalGA~~v~~g~~l~~~ 465 (590)
|+.|+......|||+|.+|..|+..
T Consensus 299 t~~Dv~~l~~~GadAvLVGEsLMr~ 323 (338)
T PLN02460 299 TPDDVAYVQNAGVKAVLVGESLVKQ 323 (338)
T ss_pred CHHHHHHHHHCCCCEEEECHHHhCC
Confidence 9999999999999999999988654
|
|
| >PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00069 Score=69.12 Aligned_cols=122 Identities=20% Similarity=0.198 Sum_probs=78.1
Q ss_pred HHHHHHHc-CCcEEEEecCC------CchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccC
Q psy1056 334 RLKLLSQA-GVDVVILDSSQ------GNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEY 406 (590)
Q Consensus 334 ~~~~li~~-gad~i~V~~~~------G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~ 406 (590)
.++...+. +-+.+-+..-. .+....++.-+.+.+. +..++.--..++..|+++.++|+-++- +-....
T Consensus 155 ~a~lare~~~~~~iKlEvi~e~~~llpd~~~~v~aa~~L~~~--Gf~v~~yc~~d~~~a~~l~~~g~~avm--Pl~~pI- 229 (326)
T PRK11840 155 TLRLAREAGGWDLVKLEVLGDAKTLYPDMVETLKATEILVKE--GFQVMVYCSDDPIAAKRLEDAGAVAVM--PLGAPI- 229 (326)
T ss_pred HHHHHHHhcCCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHC--CCEEEEEeCCCHHHHHHHHhcCCEEEe--eccccc-
Confidence 34444454 55666544321 2233334444444333 333333355689999999999996551 101111
Q ss_pred CCcccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCC
Q psy1056 407 PDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGT 465 (590)
Q Consensus 407 ~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~ 465 (590)
-+|.|+ .+..+..+.+. .++|||.++||.+|.|+++|+.||||+|.+.+.++.+
T Consensus 230 --Gsg~gv~~p~~i~~~~e~---~~vpVivdAGIg~~sda~~AmelGadgVL~nSaIa~a 284 (326)
T PRK11840 230 --GSGLGIQNPYTIRLIVEG---ATVPVLVDAGVGTASDAAVAMELGCDGVLMNTAIAEA 284 (326)
T ss_pred --cCCCCCCCHHHHHHHHHc---CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEcceeccC
Confidence 134566 66666665554 4699999999999999999999999999999998643
|
|
| >COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00081 Score=69.96 Aligned_cols=127 Identities=20% Similarity=0.215 Sum_probs=87.0
Q ss_pred hHHHHHHHHHHcCCcEEEEec--C------CC-------chhhHHHHHHHHHHhCCCceEEec---cc-----cCcHHHH
Q psy1056 330 ADKNRLKLLSQAGVDVVILDS--S------QG-------NSIYQIEMIKFIKKEYPDMQVIGG---NV-----LFGYQPR 386 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~--~------~G-------~~~~~l~~i~~i~~~~~~vpvi~g---~v-----~s~~~a~ 386 (590)
...+.+..+.+.|++.|-+|. + .| ++.-+.+.++.+++..+++||-+| ++ ...+-++
T Consensus 80 ~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRlG~d~~~~~~~~ia~ 159 (323)
T COG0042 80 LLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTVKIRLGWDDDDILALEIAR 159 (323)
T ss_pred HHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhCCCCeEEEEecccCcccccHHHHHH
Confidence 345677777788999998885 1 12 234456788888888755888876 22 2345788
Q ss_pred HHHHCCCCEEEEcccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHc-CCCEEEECccc
Q psy1056 387 ATLLNFIYQIEMIKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALAL-GASTAMMGSLL 462 (590)
Q Consensus 387 ~l~~~Gvd~i~v~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalal-GA~~v~~g~~l 462 (590)
.+.++|++++-|-..+..+ .+-|- ....+.++++.+.. +|||+-|+|.++.|+.+.|.. |+|+||+|+..
T Consensus 160 ~~~~~g~~~ltVHgRtr~~----~y~~~ad~~~I~~vk~~~~~--ipvi~NGdI~s~~~a~~~l~~tg~DgVMigRga 231 (323)
T COG0042 160 ILEDAGADALTVHGRTRAQ----GYLGPADWDYIKELKEAVPS--IPVIANGDIKSLEDAKEMLEYTGADGVMIGRGA 231 (323)
T ss_pred HHHhcCCCEEEEecccHHh----cCCCccCHHHHHHHHHhCCC--CeEEeCCCcCCHHHHHHHHHhhCCCEEEEcHHH
Confidence 8999999999662221111 11111 33345555554432 999999999999999999996 69999999755
|
|
| >cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00061 Score=66.48 Aligned_cols=121 Identities=14% Similarity=0.155 Sum_probs=89.2
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCC
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPD 408 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~ 408 (590)
+...+.+..+.+.+-. +.|-.+-- ..-++.++.+++. ++++-++.|.|.++|..+.++|+++| ++..+|
T Consensus 64 e~~i~~a~~l~~~~~~-~~iKIP~T--~~gl~ai~~L~~~--gi~v~~T~V~s~~Qa~~Aa~AGA~yv--sP~vgR---- 132 (211)
T cd00956 64 EGMVAEARKLASLGGN-VVVKIPVT--EDGLKAIKKLSEE--GIKTNVTAIFSAAQALLAAKAGATYV--SPFVGR---- 132 (211)
T ss_pred HHHHHHHHHHHHhCCC-EEEEEcCc--HhHHHHHHHHHHc--CCceeeEEecCHHHHHHHHHcCCCEE--EEecCh----
Confidence 3445566777666322 33322211 1236788888877 78999999999999999999999985 555555
Q ss_pred cccccc-chhHHHHHHHHHhcCCCc---EEecCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 409 MQVIGR-NGTAVYRVAEYASRRGVP---VIADGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 409 ~~~~g~-~~~~l~~~~~~~~~~~v~---iia~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
..+||. ....+.++.+.+...+.+ ++| |++|+.++..|+.+|||.|-+...+
T Consensus 133 ~~~~g~dg~~~i~~i~~~~~~~~~~tkil~A--s~r~~~ei~~a~~~Gad~vTv~~~v 188 (211)
T cd00956 133 IDDLGGDGMELIREIRTIFDNYGFDTKILAA--SIRNPQHVIEAALAGADAITLPPDV 188 (211)
T ss_pred HhhcCCCHHHHHHHHHHHHHHcCCCceEEec--ccCCHHHHHHHHHcCCCEEEeCHHH
Confidence 356777 667777888887777766 555 9999999999999999999888655
|
FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase. |
| >PRK04302 triosephosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00052 Score=67.71 Aligned_cols=124 Identities=15% Similarity=0.068 Sum_probs=80.7
Q ss_pred HHHHHHHcCCcEEEEecCCCch--hhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEc----ccccccCC
Q psy1056 334 RLKLLSQAGVDVVILDSSQGNS--IYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMI----KFIKKEYP 407 (590)
Q Consensus 334 ~~~~li~~gad~i~V~~~~G~~--~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~----~~~~~~~~ 407 (590)
.++.+.+.|++.+.+..++... ....+.++..++. ++..++ .+.+.+.++.+.+.|.++|-+- +.++..
T Consensus 77 ~~~~l~~~G~~~vii~~ser~~~~~e~~~~v~~a~~~--Gl~~I~-~v~~~~~~~~~~~~~~~~I~~~p~~~igt~~~-- 151 (223)
T PRK04302 77 LPEAVKDAGAVGTLINHSERRLTLADIEAVVERAKKL--GLESVV-CVNNPETSAAAAALGPDYVAVEPPELIGTGIP-- 151 (223)
T ss_pred HHHHHHHcCCCEEEEeccccccCHHHHHHHHHHHHHC--CCeEEE-EcCCHHHHHHHhcCCCCEEEEeCccccccCCC--
Confidence 3777888999999886654221 1233444444443 555553 6778889999989999988441 111100
Q ss_pred CccccccchhHHHHHHHHHhc--CCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCC
Q psy1056 408 DMQVIGRNGTAVYRVAEYASR--RGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGT 465 (590)
Q Consensus 408 ~~~~~g~~~~~l~~~~~~~~~--~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~ 465 (590)
.. +.++..+.+..+..++ .++|+++.|||+++.++..++..|||+|.+|+.+..+
T Consensus 152 -~~--~~~~~~i~~~~~~ir~~~~~~pvi~GggI~~~e~~~~~~~~gadGvlVGsa~l~~ 208 (223)
T PRK04302 152 -VS--KAKPEVVEDAVEAVKKVNPDVKVLCGAGISTGEDVKAALELGADGVLLASGVVKA 208 (223)
T ss_pred -CC--cCCHHHHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHcCCCCEEEEehHHhCC
Confidence 00 0122333333333332 2589999999999999999999999999999998644
|
|
| >TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00083 Score=65.34 Aligned_cols=118 Identities=15% Similarity=0.122 Sum_probs=79.0
Q ss_pred HHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEec--cccC-cHHHHHHHHCCCCEEEEcccccccCCCcc
Q psy1056 334 RLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGG--NVLF-GYQPRATLLNFIYQIEMIKFIKKEYPDMQ 410 (590)
Q Consensus 334 ~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g--~v~s-~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~ 410 (590)
.++.+.++|++++.++...+. ....+.++.+++. ++++++. +..+ .+.++.+.+.|+|++.+... +.
T Consensus 68 ~~~~~~~~Gad~i~vh~~~~~-~~~~~~i~~~~~~--g~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~pg-------~~ 137 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVADD-ATIKGAVKAAKKH--GKEVQVDLINVKDKVKRAKELKELGADYIGVHTG-------LD 137 (206)
T ss_pred HHHHHHHcCCCEEEEeccCCH-HHHHHHHHHHHHc--CCEEEEEecCCCChHHHHHHHHHcCCCEEEEcCC-------cC
Confidence 577889999999988765431 2235666666665 7888753 2233 47888889999999955211 21
Q ss_pred c--ccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccC
Q psy1056 411 V--IGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAG 464 (590)
Q Consensus 411 ~--~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~ 464 (590)
+ ++. ....+.++.+... ..++.++||| +...+...+..||+.+.+|+.+..
T Consensus 138 ~~~~~~~~~~~i~~l~~~~~--~~~i~v~GGI-~~~n~~~~~~~Ga~~v~vGsai~~ 191 (206)
T TIGR03128 138 EQAKGQNPFEDLQTILKLVK--EARVAVAGGI-NLDTIPDVIKLGPDIVIVGGAITK 191 (206)
T ss_pred cccCCCCCHHHHHHHHHhcC--CCcEEEECCc-CHHHHHHHHHcCCCEEEEeehhcC
Confidence 1 122 2233444444332 2566679999 888899999999999999998854
|
at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase. |
| >PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00055 Score=66.56 Aligned_cols=111 Identities=23% Similarity=0.254 Sum_probs=78.0
Q ss_pred HHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccc
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQV 411 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~ 411 (590)
.+.++..+++|+++++. ++-+ .+.++..+.. +.+++.| +.|++++.++.++|+|++.+-.. ..
T Consensus 73 ~~~~~~a~~aGA~fivs--p~~~----~~v~~~~~~~--~~~~~~G-~~t~~E~~~A~~~Gad~vk~Fpa--------~~ 135 (206)
T PRK09140 73 PEQVDRLADAGGRLIVT--PNTD----PEVIRRAVAL--GMVVMPG-VATPTEAFAALRAGAQALKLFPA--------SQ 135 (206)
T ss_pred HHHHHHHHHcCCCEEEC--CCCC----HHHHHHHHHC--CCcEEcc-cCCHHHHHHHHHcCCCEEEECCC--------CC
Confidence 45778889999999974 3222 2333443333 6788876 88999999999999999965110 01
Q ss_pred cccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 412 IGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 412 ~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
. .++-+..+..... .++|+++.||| |...+..-++.||++|.+|+.+.
T Consensus 136 ~--G~~~l~~l~~~~~-~~ipvvaiGGI-~~~n~~~~~~aGa~~vav~s~l~ 183 (206)
T PRK09140 136 L--GPAGIKALRAVLP-PDVPVFAVGGV-TPENLAPYLAAGAAGFGLGSALY 183 (206)
T ss_pred C--CHHHHHHHHhhcC-CCCeEEEECCC-CHHHHHHHHHCCCeEEEEehHhc
Confidence 1 2223333333321 14999999999 89999999999999999998884
|
|
| >PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0011 Score=63.60 Aligned_cols=108 Identities=15% Similarity=0.224 Sum_probs=80.5
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCC
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPD 408 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~ 408 (590)
++..+.++.+++.|++.+.+....... .+.++.+++.++.+.+-.+.+.+.++++.+.++|+|++ ++.+..
T Consensus 24 ~~~~~~~~~~~~~Gv~~vqlr~k~~~~---~e~~~~~~~~~~~~~~g~gtvl~~d~~~~A~~~gAdgv-~~p~~~----- 94 (187)
T PRK07455 24 ELGLQMAEAVAAGGMRLIEITWNSDQP---AELISQLREKLPECIIGTGTILTLEDLEEAIAAGAQFC-FTPHVD----- 94 (187)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCCCH---HHHHHHHHHhCCCcEEeEEEEEcHHHHHHHHHcCCCEE-ECCCCC-----
Confidence 456678999999999999997654433 56667777766555455678888999999999999999 222221
Q ss_pred ccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEE
Q psy1056 409 MQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMM 458 (590)
Q Consensus 409 ~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~ 458 (590)
.++.+.+...+++.|. |+.|+.++.+|..+|||.+.+
T Consensus 95 -----------~~~~~~~~~~~~~~i~--G~~t~~e~~~A~~~Gadyv~~ 131 (187)
T PRK07455 95 -----------PELIEAAVAQDIPIIP--GALTPTEIVTAWQAGASCVKV 131 (187)
T ss_pred -----------HHHHHHHHHcCCCEEc--CcCCHHHHHHHHHCCCCEEEE
Confidence 1233444445678777 599999999999999999966
|
|
| >cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream | Back alignment and domain information |
|---|
Probab=97.71 E-value=5.1e-05 Score=66.35 Aligned_cols=48 Identities=27% Similarity=0.455 Sum_probs=44.5
Q ss_pred CccccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 23 HGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 23 ~~m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
++|.+++.++++++++.+|+++|.+++++.+||+|++ |+++|++|.+|
T Consensus 62 dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~---~~l~Givt~~d 109 (113)
T cd04597 62 DVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDD---GTPAGIITLLD 109 (113)
T ss_pred HhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCC---CeEEEEEEHHH
Confidence 3499999999999999999999999999999999987 79999999994
|
The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0011 Score=66.17 Aligned_cols=183 Identities=15% Similarity=0.139 Sum_probs=111.0
Q ss_pred CeeEEcC-CCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCCCCCCcccCCceEEeEeeccchhHHHHHHH
Q psy1056 259 EIISAQA-GISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREADKNRLKL 337 (590)
Q Consensus 259 ~~~tv~~-~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~ 337 (590)
+..++.. ..+..+.++.+.+.+...+=|||=++ |--...++++.... . ...+-++.-+ + . +.++.
T Consensus 34 ~~~~~y~~~~dP~~~A~~~~~~Ga~~lHvVDLdg---g~~~n~~~i~~i~~-~-----~~~vqvGGGI--R--~-e~i~~ 99 (262)
T PLN02446 34 ELVTNFESDKSAAEFAEMYKRDGLTGGHVIMLGA---DDASLAAALEALRA-Y-----PGGLQVGGGV--N--S-ENAMS 99 (262)
T ss_pred CceEEeCCCCCHHHHHHHHHHCCCCEEEEEECCC---CCcccHHHHHHHHh-C-----CCCEEEeCCc--c--H-HHHHH
Confidence 3445544 45566777889999999999998665 44444555555432 1 1233334333 2 3 78889
Q ss_pred HHHcCCcEEEEecCC-CchhhHHHHHHHHHHhC-CCceEE---ec--c----cc----------CcHH-HHHHHHCCCCE
Q psy1056 338 LSQAGVDVVILDSSQ-GNSIYQIEMIKFIKKEY-PDMQVI---GG--N----VL----------FGYQ-PRATLLNFIYQ 395 (590)
Q Consensus 338 li~~gad~i~V~~~~-G~~~~~l~~i~~i~~~~-~~vpvi---~g--~----v~----------s~~~-a~~l~~~Gvd~ 395 (590)
+++.|++-+++.+.- -+...-.+.++.+.+.| |+..++ ++ + |. ++.+ +.++.+.|+..
T Consensus 100 ~l~~Ga~rViigT~Av~~~~~~p~~v~~~~~~~G~~~IvvsiD~k~~~g~~~Va~~GW~~~t~~~~~e~~~~~~~~g~~e 179 (262)
T PLN02446 100 YLDAGASHVIVTSYVFRDGQIDLERLKDLVRLVGKQRLVLDLSCRKKDGRYYVVTDRWQKFSDLAVDEETLEFLAAYCDE 179 (262)
T ss_pred HHHcCCCEEEEchHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEecCCCEEEEECCCcccCCCCHHHHHHHHHHhCCCE
Confidence 999999999986532 11000134555555555 322222 11 1 11 4455 58888899998
Q ss_pred EEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcC--CCEEEECccc
Q psy1056 396 IEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALG--ASTAMMGSLL 462 (590)
Q Consensus 396 i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalG--A~~v~~g~~l 462 (590)
|.+ |.=.++| +.-|+..+.+..++ ...++||||+|||++..|+.+...+| ...+.+|++|
T Consensus 180 ii~---TdI~rDG-tl~G~d~el~~~l~---~~~~ipVIASGGv~sleDi~~L~~~g~g~~gvIvGkAl 241 (262)
T PLN02446 180 FLV---HGVDVEG-KRLGIDEELVALLG---EHSPIPVTYAGGVRSLDDLERVKVAGGGRVDVTVGSAL 241 (262)
T ss_pred EEE---EEEcCCC-cccCCCHHHHHHHH---hhCCCCEEEECCCCCHHHHHHHHHcCCCCEEEEEEeeH
Confidence 843 2222111 11133333333444 34569999999999999999998885 6788999887
|
|
| >cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA) | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00066 Score=67.85 Aligned_cols=133 Identities=18% Similarity=0.209 Sum_probs=84.6
Q ss_pred hhHHHHHHHHHHcCCcEEEEe------cCCCch---------------hhHHHHHHHHHHhCCCceEEe--c-ccc----
Q psy1056 329 EADKNRLKLLSQAGVDVVILD------SSQGNS---------------IYQIEMIKFIKKEYPDMQVIG--G-NVL---- 380 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~------~~~G~~---------------~~~l~~i~~i~~~~~~vpvi~--g-~v~---- 380 (590)
+...+.++.+.++|+|.++++ ...|.. ....+.++.+++.. ++|+++ . +..
T Consensus 14 ~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~-~~pv~lm~y~n~~~~~G 92 (242)
T cd04724 14 ETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKN-TIPIVLMGYYNPILQYG 92 (242)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcC-CCCEEEEEecCHHHHhC
Confidence 345678889999999999999 444432 13467788888765 566543 3 321
Q ss_pred CcHHHHHHHHCCCCEEEE--------------------------ccccccc--------CCCc-------ccccc-c---
Q psy1056 381 FGYQPRATLLNFIYQIEM--------------------------IKFIKKE--------YPDM-------QVIGR-N--- 415 (590)
Q Consensus 381 s~~~a~~l~~~Gvd~i~v--------------------------~~~~~~~--------~~~~-------~~~g~-~--- 415 (590)
-..-++.+.++|++++.+ +..+... ..++ .+.|. +
T Consensus 93 ~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~~~~vy~~s~~g~tG~~~~~~ 172 (242)
T cd04724 93 LERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELASGFIYYVSRTGVTGARTELP 172 (242)
T ss_pred HHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCCCEEEEeCCCCCCCccCCC
Confidence 134477788999998876 0001000 0010 11222 2
Q ss_pred hhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 416 GTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 416 ~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
......+.+..+..++||+.+|||+++.++.++... ||++.+|+.|.
T Consensus 173 ~~~~~~i~~lr~~~~~pI~vggGI~~~e~~~~~~~~-ADgvVvGSaiv 219 (242)
T cd04724 173 DDLKELIKRIRKYTDLPIAVGFGISTPEQAAEVAKY-ADGVIVGSALV 219 (242)
T ss_pred hhHHHHHHHHHhcCCCcEEEEccCCCHHHHHHHHcc-CCEEEECHHHH
Confidence 111222333333346999999999999999999999 99999999884
|
TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan. |
| >PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00049 Score=67.14 Aligned_cols=119 Identities=17% Similarity=0.145 Sum_probs=72.5
Q ss_pred HHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcc-cccccCCCcccc
Q psy1056 334 RLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIK-FIKKEYPDMQVI 412 (590)
Q Consensus 334 ~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~-~~~~~~~~~~~~ 412 (590)
.++.+.+.|++.+++.... .. ...+..++.. +..+.+ .+.|.+++.++.+.|+|+|.++. ..+..+.+. +
T Consensus 73 ~~~~a~~~gad~vh~~~~~-~~---~~~~~~~~~~--~~~~g~-~~~t~~e~~~a~~~gaD~v~~~~~~~~~~~~~~--~ 143 (212)
T PRK00043 73 RVDLALAVGADGVHLGQDD-LP---VADARALLGP--DAIIGL-STHTLEEAAAALAAGADYVGVGPIFPTPTKKDA--K 143 (212)
T ss_pred hHHHHHHcCCCEEecCccc-CC---HHHHHHHcCC--CCEEEE-eCCCHHHHHHHhHcCCCEEEECCccCCCCCCCC--C
Confidence 3456778899998874331 11 1222222221 233322 45588899999999999996521 111110000 1
Q ss_pred cc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccC
Q psy1056 413 GR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAG 464 (590)
Q Consensus 413 g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~ 464 (590)
.. ....+.++.+... ++||++.||| ++.++.+++++||+++.+|+.+..
T Consensus 144 ~~~g~~~~~~~~~~~~--~~~v~a~GGI-~~~~i~~~~~~Ga~gv~~gs~i~~ 193 (212)
T PRK00043 144 APQGLEGLREIRAAVG--DIPIVAIGGI-TPENAPEVLEAGADGVAVVSAITG 193 (212)
T ss_pred CCCCHHHHHHHHHhcC--CCCEEEECCc-CHHHHHHHHHcCCCEEEEeHHhhc
Confidence 11 1333444443321 3999999999 799999999999999999998854
|
|
| >PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00043 Score=78.45 Aligned_cols=135 Identities=12% Similarity=0.110 Sum_probs=96.8
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEecc-ccCcHHHHHHHHCCCCEEEE----------
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGN-VLFGYQPRATLLNFIYQIEM---------- 398 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~-v~s~~~a~~l~~~Gvd~i~v---------- 398 (590)
+..+.+....+.|+..+.|.+...+..+-++.+..+++.. ++||+.|+ +.++.+..++..+|||+|-+
T Consensus 71 d~~~~a~~y~~~GA~aiSVlTe~~~F~Gs~~~l~~vr~~v-~~PvLrKDFIid~~QI~ea~~~GADavLLI~~~L~~~~l 149 (695)
T PRK13802 71 DPAALAREYEQGGASAISVLTEGRRFLGSLDDFDKVRAAV-HIPVLRKDFIVTDYQIWEARAHGADLVLLIVAALDDAQL 149 (695)
T ss_pred CHHHHHHHHHHcCCcEEEEecCcCcCCCCHHHHHHHHHhC-CCCEEeccccCCHHHHHHHHHcCCCEeehhHhhcCHHHH
Confidence 5567888889999999999886655566678888888887 79999998 55999999999999999965
Q ss_pred ----------------cccccccCC----------Ccccccc-chh----HHHHHHHHHhcCCCcEEecCCCCCHHHHHH
Q psy1056 399 ----------------IKFIKKEYP----------DMQVIGR-NGT----AVYRVAEYASRRGVPVIADGGVQSVGHVMK 447 (590)
Q Consensus 399 ----------------~~~~~~~~~----------~~~~~g~-~~~----~l~~~~~~~~~~~v~iia~GGi~~~~di~k 447 (590)
.+++..+.+ |...+.. |.. .-.++..... .++.+|+.+||+++.|+..
T Consensus 150 ~~l~~~a~~lGme~LvEvh~~~el~~a~~~ga~iiGINnRdL~tf~vd~~~t~~L~~~ip-~~~~~VsESGI~~~~d~~~ 228 (695)
T PRK13802 150 KHLLDLAHELGMTVLVETHTREEIERAIAAGAKVIGINARNLKDLKVDVNKYNELAADLP-DDVIKVAESGVFGAVEVED 228 (695)
T ss_pred HHHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCEEEEeCCCCccceeCHHHHHHHHhhCC-CCcEEEEcCCCCCHHHHHH
Confidence 000000000 1122222 222 1222333333 2577899999999999999
Q ss_pred HHHcCCCEEEECccccCCC
Q psy1056 448 ALALGASTAMMGSLLAGTS 466 (590)
Q Consensus 448 alalGA~~v~~g~~l~~~~ 466 (590)
+..+|||+|.+|..|+.+.
T Consensus 229 l~~~G~davLIGeslm~~~ 247 (695)
T PRK13802 229 YARAGADAVLVGEGVATAD 247 (695)
T ss_pred HHHCCCCEEEECHHhhCCC
Confidence 9999999999999887653
|
|
| >PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4 | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00037 Score=69.78 Aligned_cols=134 Identities=18% Similarity=0.188 Sum_probs=83.9
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCC--------------------Cch-hhHHHHHHHHHHhCCCceEEe---cccc----
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQ--------------------GNS-IYQIEMIKFIKKEYPDMQVIG---GNVL---- 380 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~--------------------G~~-~~~l~~i~~i~~~~~~vpvi~---g~v~---- 380 (590)
+...+.+..+.+.|+|++.+-.+. |.. ..+++.++.+++..+++|+++ -|..
T Consensus 24 ~~~~~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~pivlm~Y~N~i~~~G 103 (259)
T PF00290_consen 24 ETTLEILKALEEAGADIIEIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKKEPDIPIVLMTYYNPIFQYG 103 (259)
T ss_dssp HHHHHHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTSSEEEEEE-HHHHHHH-
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCCCCCEEEEeeccHHhccc
Confidence 455678999999999999986532 222 345688899997777899873 2322
Q ss_pred CcHHHHHHHHCCCCEEEE--------------------------cccccccC--------C---------Ccccccc-ch
Q psy1056 381 FGYQPRATLLNFIYQIEM--------------------------IKFIKKEY--------P---------DMQVIGR-NG 416 (590)
Q Consensus 381 s~~~a~~l~~~Gvd~i~v--------------------------~~~~~~~~--------~---------~~~~~g~-~~ 416 (590)
-..-++.+.++|+|++.+ +..+...+ + |.+|... ..
T Consensus 104 ~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~~~~~gl~~I~lv~p~t~~~Ri~~i~~~a~gFiY~vs~~GvTG~~~~~~ 183 (259)
T PF00290_consen 104 IERFFKEAKEAGVDGLIIPDLPPEESEELREAAKKHGLDLIPLVAPTTPEERIKKIAKQASGFIYLVSRMGVTGSRTELP 183 (259)
T ss_dssp HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHHHHHTT-EEEEEEETTS-HHHHHHHHHH-SSEEEEESSSSSSSTTSSCH
T ss_pred hHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhCCcEEEeeccCCCCCCcccch
Confidence 223456777899999987 10000000 0 1233222 22
Q ss_pred hHHHHHHHHHh-cCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 417 TAVYRVAEYAS-RRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 417 ~~l~~~~~~~~-~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
..+.+..+.++ ..++|+....||+|+.++.+.. .|||+|.+|+.|.
T Consensus 184 ~~l~~~i~~ik~~~~~Pv~vGFGI~~~e~~~~~~-~~aDGvIVGSa~v 230 (259)
T PF00290_consen 184 DELKEFIKRIKKHTDLPVAVGFGISTPEQAKKLA-AGADGVIVGSAFV 230 (259)
T ss_dssp HHHHHHHHHHHHTTSS-EEEESSS-SHHHHHHHH-TTSSEEEESHHHH
T ss_pred HHHHHHHHHHHhhcCcceEEecCCCCHHHHHHHH-ccCCEEEECHHHH
Confidence 33444333333 3469999999999999998766 9999999999984
|
2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: |
| >PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00032 Score=70.86 Aligned_cols=91 Identities=14% Similarity=0.102 Sum_probs=69.9
Q ss_pred HHHHHHHHHHhCCC-ceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhc--CCCcEE
Q psy1056 358 QIEMIKFIKKEYPD-MQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASR--RGVPVI 434 (590)
Q Consensus 358 ~l~~i~~i~~~~~~-vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~--~~v~ii 434 (590)
+.+.++.+|+.+|. .++.+ ++.+.++++.+.++|+|.|-+ .. . ++..+.++.+.... .++.++
T Consensus 168 i~~~v~~~k~~~p~~~~I~V-Ev~tleea~~A~~~GaDiI~L---Dn-~---------~~e~l~~~v~~~~~~~~~~~ie 233 (273)
T PRK05848 168 LKEFIQHARKNIPFTAKIEI-ECESLEEAKNAMNAGADIVMC---DN-M---------SVEEIKEVVAYRNANYPHVLLE 233 (273)
T ss_pred HHHHHHHHHHhCCCCceEEE-EeCCHHHHHHHHHcCCCEEEE---CC-C---------CHHHHHHHHHHhhccCCCeEEE
Confidence 46788999999984 55555 999999999999999998822 11 1 33444455444321 246799
Q ss_pred ecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 435 ADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 435 a~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
|+||| |+..+.+...+|+|++.+|++..
T Consensus 234 AsGgI-t~~ni~~ya~~GvD~IsvG~l~~ 261 (273)
T PRK05848 234 ASGNI-TLENINAYAKSGVDAISSGSLIH 261 (273)
T ss_pred EECCC-CHHHHHHHHHcCCCEEEeChhhc
Confidence 99999 99999999999999999998773
|
|
| >KOG0474|consensus | Back alignment and domain information |
|---|
Probab=97.62 E-value=3.3e-05 Score=83.32 Aligned_cols=118 Identities=18% Similarity=0.348 Sum_probs=93.0
Q ss_pred Ccccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCC--CeEEEEEecchhh-------cccc---
Q psy1056 178 DMQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLG--EKLLGIVTSRDVD-------FLEN--- 242 (590)
Q Consensus 178 ~~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~--~~lvGivt~~Dl~-------~~~~--- 242 (590)
+.++|+.|++. .+.+....+.. +.+.+.++||+|+...+ +++.|+|-...+. +..+
T Consensus 584 a~ev~~~pvi~l~~~ekV~~Iv~vL---------k~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~ 654 (762)
T KOG0474|consen 584 AGEVMSKPVICLNRVEKVAVIVDVL---------KSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRS 654 (762)
T ss_pred HhhhccCCeEEEechhhHHHHHHHH---------HhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCcc
Confidence 35688888877 67777777777 88899999999974211 4788887777664 1111
Q ss_pred ------------------------------ccccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCc
Q psy1056 243 ------------------------------SANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGE 292 (590)
Q Consensus 243 ------------------------------~~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~ 292 (590)
.......+..+|.+ .|+++++++|+..+..++++-+++++.||+..++
T Consensus 655 ~~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~--sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~ 732 (762)
T KOG0474|consen 655 TFDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNP--SPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNR 732 (762)
T ss_pred ccCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCC--CCcccCcccchHHHHHHHHHhcceeEEEecCCCc
Confidence 00124567788888 9999999999999999999999999999999999
Q ss_pred eEEEEeeccccccc
Q psy1056 293 LIALIARTDLKKSR 306 (590)
Q Consensus 293 l~Giit~~dll~~~ 306 (590)
++|++|++|+....
T Consensus 733 ~~gilTR~D~~~~~ 746 (762)
T KOG0474|consen 733 VVGILTRKDLARYR 746 (762)
T ss_pred eeEEEehhhhhhHH
Confidence 99999999998654
|
|
| >COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.62 E-value=5.5e-05 Score=72.54 Aligned_cols=104 Identities=13% Similarity=0.233 Sum_probs=89.0
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhh-ccccccccccchhhccccCCCeeEEcCCC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVD-FLENSANMDLKIEKVMTNVNEIISAQAGI 267 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~-~~~~~~~~~~~V~~im~~~~~~~tv~~~~ 267 (590)
++++.+.+..+ .+..++++||+.+. .+.+.||+-.+||+ +..... ....++++.. |.+.++++-
T Consensus 85 ~~~l~~~l~~i---------iesaHSRfPVi~ed--kD~v~GIL~AKDLL~~~~~~~-~~F~i~~lLR---Pav~VPESK 149 (293)
T COG4535 85 NQTLDECLDVI---------IESAHSRFPVISED--KDHVEGILLAKDLLPFMRSDA-EPFDIKELLR---PAVVVPESK 149 (293)
T ss_pred cCCHHHHHHHH---------HHhccccCCcccCC--chhhhhhhhHHHHHHHhcCCc-ccccHHHhcc---cceecccch
Confidence 88999999999 88999999999763 57899999999998 443321 2355778776 788999999
Q ss_pred CHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccC
Q psy1056 268 SLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRD 307 (590)
Q Consensus 268 ~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~ 307 (590)
.+...++-|..++.+...|+|+-|.+-|+||..|++....
T Consensus 150 rvd~lLkeFR~~RnHMAIViDEfGgVsGLVTIEDiLEqIV 189 (293)
T COG4535 150 RVDRLLKEFRSQRNHMAIVIDEFGGVSGLVTIEDILEQIV 189 (293)
T ss_pred hHHHHHHHHHhhcCceEEEEeccCCeeeeEEHHHHHHHHh
Confidence 9999999999999999999999999999999999998754
|
|
| >PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0018 Score=64.09 Aligned_cols=174 Identities=13% Similarity=0.010 Sum_probs=103.0
Q ss_pred CHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCCCCCCcccCCceEEeEeeccchhHHHHHHHHHHcCCcEEE
Q psy1056 268 SLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVVI 347 (590)
Q Consensus 268 ~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~gad~i~ 347 (590)
...+..+.+.+.+.+.+-|+|=++.. |-=...++++..... ...++.++.-+. ..+.++.+++.|++-++
T Consensus 31 dP~~~a~~~~~~ga~~lhivDLd~a~-~~~~n~~~i~~i~~~-----~~~~v~vGGGIr----s~e~~~~~l~~Ga~kvv 100 (232)
T PRK13586 31 NPIEIASKLYNEGYTRIHVVDLDAAE-GVGNNEMYIKEISKI-----GFDWIQVGGGIR----DIEKAKRLLSLDVNALV 100 (232)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCcC-CCcchHHHHHHHHhh-----CCCCEEEeCCcC----CHHHHHHHHHCCCCEEE
Confidence 45566677888999999999855432 322233444443221 111344444333 34667888899999998
Q ss_pred EecCCCchhhHHHHHHHHHHhCCCceEE----e---cccc---------C-cHHHHHHHHCCCCEEEEcccccccCCCcc
Q psy1056 348 LDSSQGNSIYQIEMIKFIKKEYPDMQVI----G---GNVL---------F-GYQPRATLLNFIYQIEMIKFIKKEYPDMQ 410 (590)
Q Consensus 348 V~~~~G~~~~~l~~i~~i~~~~~~vpvi----~---g~v~---------s-~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~ 410 (590)
+.+.--.. .+.++.+.+.|++-.++ + +.+. + .+-++++.+.|+..|.+ +.-..+| +
T Consensus 101 igt~a~~~---p~~~~~~~~~~g~~~ivvslD~~~~~~v~~~gw~~~~~~~~e~~~~l~~~g~~~ii~---tdI~~dG-t 173 (232)
T PRK13586 101 FSTIVFTN---FNLFHDIVREIGSNRVLVSIDYDNTKRVLIRGWKEKSMEVIDGIKKVNELELLGIIF---TYISNEG-T 173 (232)
T ss_pred ECchhhCC---HHHHHHHHHHhCCCCEEEEEEcCCCCEEEccCCeeCCCCHHHHHHHHHhcCCCEEEE---ecccccc-c
Confidence 86543111 34555656665211122 1 1111 1 26667888899987743 2211111 1
Q ss_pred ccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 411 VIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 411 ~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
.-|+..+.+..+.+ . ..|+|++||+++..|+.++..+|+++|.+|++|
T Consensus 174 ~~G~d~el~~~~~~---~-~~~viasGGv~s~~Dl~~l~~~G~~gvivg~Al 221 (232)
T PRK13586 174 TKGIDYNVKDYARL---I-RGLKEYAGGVSSDADLEYLKNVGFDYIIVGMAF 221 (232)
T ss_pred CcCcCHHHHHHHHh---C-CCCEEEECCCCCHHHHHHHHHCCCCEEEEehhh
Confidence 12443333333322 2 356999999999999999999999999999988
|
|
| >PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0012 Score=64.41 Aligned_cols=110 Identities=16% Similarity=0.141 Sum_probs=79.1
Q ss_pred HHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccc
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQV 411 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~ 411 (590)
.+.++..+++|+++++ +.+.. .+.++..++. ++|++- ++.|+.++.++.++|+|++.+-+.. -
T Consensus 78 ~~~~~~a~~aGA~Fiv---sP~~~---~~v~~~~~~~--~i~~iP-G~~T~~E~~~A~~~Gad~vklFPa~--------~ 140 (213)
T PRK06552 78 AVTARLAILAGAQFIV---SPSFN---RETAKICNLY--QIPYLP-GCMTVTEIVTALEAGSEIVKLFPGS--------T 140 (213)
T ss_pred HHHHHHHHHcCCCEEE---CCCCC---HHHHHHHHHc--CCCEEC-CcCCHHHHHHHHHcCCCEEEECCcc--------c
Confidence 4677888999999987 32322 3455555555 788776 7889999999999999999762111 0
Q ss_pred cccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 412 IGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 412 ~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
. .+.-+..++... .++|+++.||| |...+..-++.||+++.+|+.+.
T Consensus 141 ~--G~~~ik~l~~~~--p~ip~~atGGI-~~~N~~~~l~aGa~~vavgs~l~ 187 (213)
T PRK06552 141 L--GPSFIKAIKGPL--PQVNVMVTGGV-NLDNVKDWFAAGADAVGIGGELN 187 (213)
T ss_pred C--CHHHHHHHhhhC--CCCEEEEECCC-CHHHHHHHHHCCCcEEEEchHHh
Confidence 1 222233333322 24999999999 68999999999999999998884
|
|
| >PLN02334 ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0015 Score=64.80 Aligned_cols=125 Identities=17% Similarity=0.101 Sum_probs=75.8
Q ss_pred HHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEe-ccccC-cHHHHHHHHCC-CCEEEE-cccccccCCC
Q psy1056 333 NRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIG-GNVLF-GYQPRATLLNF-IYQIEM-IKFIKKEYPD 408 (590)
Q Consensus 333 e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~-g~v~s-~~~a~~l~~~G-vd~i~v-~~~~~~~~~~ 408 (590)
+.++.+.+.|++.+.++..+.........++.++.. +..+.+ -+-.| .+.++.+.+.| +|+|-+ ++..+..
T Consensus 79 d~~~~~~~~gad~v~vH~~q~~~d~~~~~~~~i~~~--g~~iGls~~~~t~~~~~~~~~~~~~~Dyi~~~~v~pg~~--- 153 (229)
T PLN02334 79 DYVPDFAKAGASIFTFHIEQASTIHLHRLIQQIKSA--GMKAGVVLNPGTPVEAVEPVVEKGLVDMVLVMSVEPGFG--- 153 (229)
T ss_pred HHHHHHHHcCCCEEEEeeccccchhHHHHHHHHHHC--CCeEEEEECCCCCHHHHHHHHhccCCCEEEEEEEecCCC---
Confidence 456667889999997777641112345666666654 332221 12213 44455555553 999855 4443322
Q ss_pred ccccccchhHHHHHHHHHhc-CCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCC
Q psy1056 409 MQVIGRNGTAVYRVAEYASR-RGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGT 465 (590)
Q Consensus 409 ~~~~g~~~~~l~~~~~~~~~-~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~ 465 (590)
+..+....+..++++... .++||.++||| |...+.+..+.|||.+.+|+.+...
T Consensus 154 --~~~~~~~~~~~i~~~~~~~~~~~I~a~GGI-~~e~i~~l~~aGad~vvvgsai~~~ 208 (229)
T PLN02334 154 --GQSFIPSMMDKVRALRKKYPELDIEVDGGV-GPSTIDKAAEAGANVIVAGSAVFGA 208 (229)
T ss_pred --ccccCHHHHHHHHHHHHhCCCCcEEEeCCC-CHHHHHHHHHcCCCEEEEChHHhCC
Confidence 211122233333333222 24799999999 8999999999999999999988543
|
|
| >PRK13125 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0022 Score=64.19 Aligned_cols=125 Identities=14% Similarity=0.013 Sum_probs=77.7
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCc-hhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCc
Q psy1056 331 DKNRLKLLSQAGVDVVILDSSQGN-SIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDM 409 (590)
Q Consensus 331 ~~e~~~~li~~gad~i~V~~~~G~-~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~ 409 (590)
..+.++.+.++|++.+.++...-. .+...+.+..+++.--..-+.+..-.+.+..+.+.+..-.++.+++..+ +
T Consensus 90 ~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~~~~l~msv~~~-----~ 164 (244)
T PRK13125 90 LDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLSPLFIYYGLRPA-----T 164 (244)
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCEEEEEeCCC-----C
Confidence 345678888999999998643211 2334556667776531222224344456777777777655553332221 1
Q ss_pred cccccch---hHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 410 QVIGRNG---TAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 410 ~~~g~~~---~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
|..+.. ..+.++++... +.|++.+|||+|+.++.+++..|||++.+|+.|.
T Consensus 165 -g~~~~~~~~~~i~~lr~~~~--~~~i~v~gGI~~~e~i~~~~~~gaD~vvvGSai~ 218 (244)
T PRK13125 165 -GVPLPVSVERNIKRVRNLVG--NKYLVVGFGLDSPEDARDALSAGADGVVVGTAFI 218 (244)
T ss_pred -CCCchHHHHHHHHHHHHhcC--CCCEEEeCCcCCHHHHHHHHHcCCCEEEECHHHH
Confidence 111111 22333443322 3789999999999999999999999999999883
|
|
| >cd00945 Aldolase_Class_I Class I aldolases | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0016 Score=62.39 Aligned_cols=123 Identities=15% Similarity=0.028 Sum_probs=83.9
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCC-----chhhHHHHHHHHHHhC-CCceEEecccc----CcHHHHH----HHHCCCC
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQG-----NSIYQIEMIKFIKKEY-PDMQVIGGNVL----FGYQPRA----TLLNFIY 394 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G-----~~~~~l~~i~~i~~~~-~~vpvi~g~v~----s~~~a~~----l~~~Gvd 394 (590)
....+.++...+.|++.+.+..+.+ +.+.+.+.++.+.+.. .+.|+++.+.. +.+...+ +.+.|++
T Consensus 65 ~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~~ 144 (201)
T cd00945 65 EVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAGAD 144 (201)
T ss_pred HHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCC
Confidence 4566788889999999998865432 1355677777887764 37899987763 3344333 4679999
Q ss_pred EEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEEC
Q psy1056 395 QIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMG 459 (590)
Q Consensus 395 ~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g 459 (590)
+|+.+...... +.....+..+.+... .++|+++.||+.++..+..++.+||+++++|
T Consensus 145 ~iK~~~~~~~~-------~~~~~~~~~i~~~~~-~~~~v~~~gg~~~~~~~~~~~~~Ga~g~~~g 201 (201)
T cd00945 145 FIKTSTGFGGG-------GATVEDVKLMKEAVG-GRVGVKAAGGIKTLEDALAAIEAGADGIGTS 201 (201)
T ss_pred EEEeCCCCCCC-------CCCHHHHHHHHHhcc-cCCcEEEECCCCCHHHHHHHHHhccceeecC
Confidence 99664321110 112333444444332 1479999999999999999999999999765
|
The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin. |
| >cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0011 Score=70.07 Aligned_cols=131 Identities=17% Similarity=0.125 Sum_probs=84.8
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCC--------------------c----hhhHHHHHHHHHHhCC-CceEEec----c--
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQG--------------------N----SIYQIEMIKFIKKEYP-DMQVIGG----N-- 378 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G--------------------~----~~~~l~~i~~i~~~~~-~vpvi~g----~-- 378 (590)
...+.+..+.++|.|.+.|+.++| . .....+.++.+++..+ +.++.++ +
T Consensus 138 ~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~ 217 (353)
T cd02930 138 DFARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLV 217 (353)
T ss_pred HHHHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEecccccC
Confidence 344567778889999999987432 1 1345688999999874 5566521 1
Q ss_pred --ccCcH----HHHHHHHCCCCEEEEccccc--ccCCCcccccc--chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHH
Q psy1056 379 --VLFGY----QPRATLLNFIYQIEMIKFIK--KEYPDMQVIGR--NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKA 448 (590)
Q Consensus 379 --v~s~~----~a~~l~~~Gvd~i~v~~~~~--~~~~~~~~~g~--~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~ka 448 (590)
..+.+ -++.|.++|+|+|.|+.... +. ...... ...-+...++..+..++||++.|++.++.++.++
T Consensus 218 ~~g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~---~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~i~~~~~a~~~ 294 (353)
T cd02930 218 EGGSTWEEVVALAKALEAAGADILNTGIGWHEARV---PTIATSVPRGAFAWATAKLKRAVDIPVIASNRINTPEVAERL 294 (353)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCC---ccccccCCchhhHHHHHHHHHhCCCCEEEcCCCCCHHHHHHH
Confidence 12444 44677779999998854221 11 000000 0001212233333457999999999999999999
Q ss_pred HHcC-CCEEEECcccc
Q psy1056 449 LALG-ASTAMMGSLLA 463 (590)
Q Consensus 449 lalG-A~~v~~g~~l~ 463 (590)
++.| ||+|++|+++.
T Consensus 295 i~~g~~D~V~~gR~~l 310 (353)
T cd02930 295 LADGDADMVSMARPFL 310 (353)
T ss_pred HHCCCCChhHhhHHHH
Confidence 9987 99999999885
|
DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi |
| >PRK08883 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0011 Score=65.17 Aligned_cols=130 Identities=15% Similarity=0.081 Sum_probs=84.1
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCchh----hHHHHHHHHHHhCC----CceEEeccccCcH-HHHHHHHCCCCEEEEcc
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNSI----YQIEMIKFIKKEYP----DMQVIGGNVLFGY-QPRATLLNFIYQIEMIK 400 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~~----~~l~~i~~i~~~~~----~vpvi~g~v~s~~-~a~~l~~~Gvd~i~v~~ 400 (590)
.+.+.++.+.++|++.+|+|.-.|+.. +-.+.++.+++..+ ++-+++. .++ -...+.++|+|.|.+-.
T Consensus 13 ~l~~~i~~l~~~g~~~lH~DvmDG~Fvpn~tfg~~~i~~i~~~~~~~~~dvHLMv~---~p~~~i~~~~~~gad~i~~H~ 89 (220)
T PRK08883 13 RLGEDVEKVLAAGADVVHFDVMDNHYVPNLTFGAPICKALRDYGITAPIDVHLMVK---PVDRIIPDFAKAGASMITFHV 89 (220)
T ss_pred HHHHHHHHHHHcCCCEEEEecccCcccCccccCHHHHHHHHHhCCCCCEEEEeccC---CHHHHHHHHHHhCCCEEEEcc
Confidence 445678888899999999999877641 12567888877522 3344443 333 34678889999998722
Q ss_pred cccccC----------C---------------------------------Cccccccch---hHHHHHHHHHhcC--CCc
Q psy1056 401 FIKKEY----------P---------------------------------DMQVIGRNG---TAVYRVAEYASRR--GVP 432 (590)
Q Consensus 401 ~~~~~~----------~---------------------------------~~~~~g~~~---~~l~~~~~~~~~~--~v~ 432 (590)
+.+... + ||.|..... ..+.++++...+. ++|
T Consensus 90 Ea~~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~~~D~vlvMtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~ 169 (220)
T PRK08883 90 EASEHVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMDKVDLILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIR 169 (220)
T ss_pred cCcccHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCeEEEEEecCCCCCceecHhHHHHHHHHHHHHHhcCCCee
Confidence 211000 0 233322222 2344444444322 488
Q ss_pred EEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 433 VIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 433 iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
|.++|||. ...+.+....|||.+.+|+.+.
T Consensus 170 I~vdGGI~-~eni~~l~~aGAd~vVvGSaIf 199 (220)
T PRK08883 170 LEIDGGVK-VDNIREIAEAGADMFVAGSAIF 199 (220)
T ss_pred EEEECCCC-HHHHHHHHHcCCCEEEEeHHHh
Confidence 99999996 8899999999999999998874
|
|
| >PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.001 Score=77.56 Aligned_cols=130 Identities=16% Similarity=0.126 Sum_probs=84.8
Q ss_pred HHHHHHHHHcCCcEEEEecCCC--------------------c----hhhHHHHHHHHHHhCC-CceEEecc--------
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQG--------------------N----SIYQIEMIKFIKKEYP-DMQVIGGN-------- 378 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G--------------------~----~~~~l~~i~~i~~~~~-~vpvi~g~-------- 378 (590)
.+.+..+.++|.|.|.|+.++| . ..+.++.++.+++..+ +.||.++=
T Consensus 554 ~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~~ 633 (765)
T PRK08255 554 VAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAHDWVEG 633 (765)
T ss_pred HHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEccccccCC
Confidence 3456677889999999987542 1 1445788999999874 56776531
Q ss_pred ccCc----HHHHHHHHCCCCEEEEcccccccC-CCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcC-
Q psy1056 379 VLFG----YQPRATLLNFIYQIEMIKFIKKEY-PDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALG- 452 (590)
Q Consensus 379 v~s~----~~a~~l~~~Gvd~i~v~~~~~~~~-~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalG- 452 (590)
..+. +-++.|.++|+|+|+|+...+... ....+-+++......+++ ..++|||+.|+|+++.++.++|+-|
T Consensus 634 g~~~~~~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~ik~---~~~~pv~~~G~i~~~~~a~~~l~~g~ 710 (765)
T PRK08255 634 GNTPDDAVEIARAFKAAGADLIDVSSGQVSKDEKPVYGRMYQTPFADRIRN---EAGIATIAVGAISEADHVNSIIAAGR 710 (765)
T ss_pred CCCHHHHHHHHHHHHhcCCcEEEeCCCCCCcCCCCCcCccccHHHHHHHHH---HcCCEEEEeCCCCCHHHHHHHHHcCC
Confidence 1133 445677889999998853222110 000011121111122332 3469999999999999999999977
Q ss_pred CCEEEECccccC
Q psy1056 453 ASTAMMGSLLAG 464 (590)
Q Consensus 453 A~~v~~g~~l~~ 464 (590)
||+|++|+.|..
T Consensus 711 ~D~v~~gR~~l~ 722 (765)
T PRK08255 711 ADLCALARPHLA 722 (765)
T ss_pred cceeeEcHHHHh
Confidence 999999998853
|
|
| >PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0015 Score=71.13 Aligned_cols=121 Identities=17% Similarity=0.241 Sum_probs=79.7
Q ss_pred HHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEec--cccC-cHHHHHHHHCCCCEEEEcccccccCCCcc
Q psy1056 334 RLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGG--NVLF-GYQPRATLLNFIYQIEMIKFIKKEYPDMQ 410 (590)
Q Consensus 334 ~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g--~v~s-~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~ 410 (590)
.++.+.++|++.+++...... ....+.++.+++. +.+++++ +..+ .+.++.+.++|+|+|.+....+..
T Consensus 73 ~v~~a~~aGAdgV~v~g~~~~-~~~~~~i~~a~~~--G~~~~~g~~s~~t~~e~~~~a~~~GaD~I~~~pg~~~~----- 144 (430)
T PRK07028 73 EVEMAAKAGADIVCILGLADD-STIEDAVRAARKY--GVRLMADLINVPDPVKRAVELEELGVDYINVHVGIDQQ----- 144 (430)
T ss_pred HHHHHHHcCCCEEEEecCCCh-HHHHHHHHHHHHc--CCEEEEEecCCCCHHHHHHHHHhcCCCEEEEEeccchh-----
Confidence 677888999999987643221 1234556666664 6677764 3333 466788899999999553221111
Q ss_pred ccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCC
Q psy1056 411 VIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGT 465 (590)
Q Consensus 411 ~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~ 465 (590)
..+. ..+..+++.....++||++.||| +...+..+++.||+.+.+|+.+...
T Consensus 145 ~~~~--~~~~~l~~l~~~~~iPI~a~GGI-~~~n~~~~l~aGAdgv~vGsaI~~~ 196 (430)
T PRK07028 145 MLGK--DPLELLKEVSEEVSIPIAVAGGL-DAETAAKAVAAGADIVIVGGNIIKS 196 (430)
T ss_pred hcCC--ChHHHHHHHHhhCCCcEEEECCC-CHHHHHHHHHcCCCEEEEChHHcCC
Confidence 0111 11223343333346999999999 7888999999999999999998654
|
|
| >smart00116 CBS Domain in cystathionine beta-synthase and other proteins | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00017 Score=51.28 Aligned_cols=47 Identities=26% Similarity=0.605 Sum_probs=42.7
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccc
Q psy1056 259 EIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKS 305 (590)
Q Consensus 259 ~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~ 305 (590)
+++++++++++.++.+.|.+++.+.+||++++++++|+++..++.+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~ 47 (49)
T smart00116 1 DVVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKA 47 (49)
T ss_pred CceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHh
Confidence 35678999999999999999999999999988999999999998764
|
Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease. |
| >COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0014 Score=68.95 Aligned_cols=133 Identities=18% Similarity=0.128 Sum_probs=86.4
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCC--------------------c---h-hhHHHHHHHHHHhCC-CceEEec----cc-
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQG--------------------N---S-IYQIEMIKFIKKEYP-DMQVIGG----NV- 379 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G--------------------~---~-~~~l~~i~~i~~~~~-~vpvi~g----~v- 379 (590)
+..+.++...++|.|.+.|+.+|| . + .+.++.++.+++.++ +.||.+. +.
T Consensus 150 ~f~~AA~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~~ 229 (363)
T COG1902 150 DFARAARRAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGADFPVGVRLSPDDFF 229 (363)
T ss_pred HHHHHHHHHHHcCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhCCCceEEEEECccccC
Confidence 445577888899999999997652 1 1 345788999999885 3456531 22
Q ss_pred ---c-C----cHHHHHHHHCC-CCEEEEcccccccCC--CccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHH
Q psy1056 380 ---L-F----GYQPRATLLNF-IYQIEMIKFIKKEYP--DMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKA 448 (590)
Q Consensus 380 ---~-s----~~~a~~l~~~G-vd~i~v~~~~~~~~~--~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~ka 448 (590)
+ + .+-++.|.+.| +|+|.++-......+ ...+-|++.. ..........+|+|+.|||.++..+.++
T Consensus 230 ~~~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~---~a~~i~~~~~~pvi~~G~i~~~~~Ae~~ 306 (363)
T COG1902 230 DGGGLTIEEAVELAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVE---FAARIKKAVRIPVIAVGGINDPEQAEEI 306 (363)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCccEEEeecccccCCCCccccccchhHH---HHHHHHHhcCCCEEEeCCCCCHHHHHHH
Confidence 1 3 45567788899 799988322211000 0100111111 1111222335999999999999999999
Q ss_pred HHcC-CCEEEECccccCC
Q psy1056 449 LALG-ASTAMMGSLLAGT 465 (590)
Q Consensus 449 lalG-A~~v~~g~~l~~~ 465 (590)
|+-| ||.|.+|++|..-
T Consensus 307 l~~g~aDlVa~gR~~lad 324 (363)
T COG1902 307 LASGRADLVAMGRPFLAD 324 (363)
T ss_pred HHcCCCCEEEechhhhcC
Confidence 9998 9999999999643
|
|
| >COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.49 E-value=8.6e-05 Score=75.94 Aligned_cols=118 Identities=15% Similarity=0.237 Sum_probs=91.1
Q ss_pred Ccccccccccc-----hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhccccccccccchhh
Q psy1056 178 DMQVIGGNVVT-----TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEK 252 (590)
Q Consensus 178 ~~~im~~~~~~-----~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~~~~~~~~V~~ 252 (590)
..++|...... +++.++.++.. .+..+.++|+..+. -+.++|++..+|+..+..... ...-.+
T Consensus 202 V~DIMvpR~~i~~id~d~~~e~iv~ql---------~~s~HtRiplyr~~--~DnIiGvlh~r~llr~l~e~~-~~~k~d 269 (423)
T COG4536 202 VSDIMVPRNEIIGIDIDDPWEEIVRQL---------LHSPHTRIPLYRDD--LDNIIGVLHVRDLLRLLNEKN-EFTKED 269 (423)
T ss_pred eeeeeccccceeeecCCCCHHHHHHHH---------hhCCCCceeeecCC--hhHhhhhhhHHHHHHHhhccC-cccHhH
Confidence 34566443222 88999999998 88899999999762 356999999999983322111 122334
Q ss_pred ccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccC
Q psy1056 253 VMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRD 307 (590)
Q Consensus 253 im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~ 307 (590)
+++-..+|+.+++.+++.+-+..|.+++-+.-.||||-|.+.|+||..|++...-
T Consensus 270 ~~~~a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~GLVTLEDIlEEIV 324 (423)
T COG4536 270 ILRAADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQGLVTLEDILEEIV 324 (423)
T ss_pred HHHHhcCCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEEeeeeHHHHHHHHh
Confidence 4432237899999999999999999999999999999999999999999998754
|
|
| >cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5 | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0014 Score=69.12 Aligned_cols=128 Identities=19% Similarity=0.161 Sum_probs=83.7
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCC--------------------c----hhhHHHHHHHHHHhC-CCceEEeccc-----
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQG--------------------N----SIYQIEMIKFIKKEY-PDMQVIGGNV----- 379 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G--------------------~----~~~~l~~i~~i~~~~-~~vpvi~g~v----- 379 (590)
...+.+..+.++|.|.|.|+.++| . ..+.++.++.+++.. ++.||.++=-
T Consensus 145 ~f~~AA~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis~~~~~ 224 (361)
T cd04747 145 AFARAAADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFSQWKQQ 224 (361)
T ss_pred HHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECccccc
Confidence 344567788889999999997552 1 144578999999987 4667775311
Q ss_pred -------cCcHHH----HHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCC---------
Q psy1056 380 -------LFGYQP----RATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGV--------- 439 (590)
Q Consensus 380 -------~s~~~a----~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi--------- 439 (590)
.+.+++ +.|.++|+|+|.|+...... +.+.+... .....+++ ..++||++.|||
T Consensus 225 ~~~~~~g~~~~e~~~~~~~l~~~gvd~i~vs~g~~~~-~~~~~~~~--~~~~~~k~---~~~~pv~~~G~i~~~~~~~~~ 298 (361)
T cd04747 225 DYTARLADTPDELEALLAPLVDAGVDIFHCSTRRFWE-PEFEGSEL--NLAGWTKK---LTGLPTITVGSVGLDGDFIGA 298 (361)
T ss_pred ccccCCCCCHHHHHHHHHHHHHcCCCEEEecCCCccC-CCcCccch--hHHHHHHH---HcCCCEEEECCcccccccccc
Confidence 244443 44578999999774321101 00211111 11112222 246999999999
Q ss_pred ---------CCHHHHHHHHHcC-CCEEEECcccc
Q psy1056 440 ---------QSVGHVMKALALG-ASTAMMGSLLA 463 (590)
Q Consensus 440 ---------~~~~di~kalalG-A~~v~~g~~l~ 463 (590)
+++.++.++|+-| ||+|++|+++.
T Consensus 299 ~~~~~~~~~~~~~~a~~~l~~g~~D~V~~gR~~i 332 (361)
T cd04747 299 FAGDEGASPASLDRLLERLERGEFDLVAVGRALL 332 (361)
T ss_pred cccccccccCCHHHHHHHHHCCCCCeehhhHHHH
Confidence 5999999999977 99999999885
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >KOG2335|consensus | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0021 Score=65.91 Aligned_cols=139 Identities=22% Similarity=0.187 Sum_probs=92.0
Q ss_pred CCceEEeEeeccchhHHHHHHHHHHcCCcEEEEec--CC------C-------chhhHHHHHHHHHHhCCCceEEec---
Q psy1056 316 NNQLIVGAAIGTREADKNRLKLLSQAGVDVVILDS--SQ------G-------NSIYQIEMIKFIKKEYPDMQVIGG--- 377 (590)
Q Consensus 316 ~~~l~v~a~i~~~~~~~e~~~~li~~gad~i~V~~--~~------G-------~~~~~l~~i~~i~~~~~~vpvi~g--- 377 (590)
...+++...-+ +......+..+++.=+|.|-+++ ++ | +.+-+-+++..++.++ ++||-+|
T Consensus 73 D~PLIvQf~~n-dp~~ll~Aa~lv~~y~D~idlNcGCPq~~a~~g~yGa~L~~~~eLv~e~V~~v~~~l-~~pVs~KIRI 150 (358)
T KOG2335|consen 73 DRPLIVQFGGN-DPENLLKAARLVQPYCDGIDLNCGCPQKVAKRGGYGAFLMDNPELVGEMVSAVRANL-NVPVSVKIRI 150 (358)
T ss_pred CCceEEEEcCC-CHHHHHHHHHHhhhhcCcccccCCCCHHHHhcCCccceeccCHHHHHHHHHHHHhhc-CCCeEEEEEe
Confidence 34444443333 33344444455555558887775 22 1 2233457888888888 6777654
Q ss_pred --ccc-CcHHHHHHHHCCCCEEEEcccccccCCCccc--ccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHH-
Q psy1056 378 --NVL-FGYQPRATLLNFIYQIEMIKFIKKEYPDMQV--IGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALA- 450 (590)
Q Consensus 378 --~v~-s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~--~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kala- 450 (590)
+.- |.+-++.+.++|++.+-|--. ++. ..| .|. ..+++..+++.... +|+||-|+|.+..|+-.++.
T Consensus 151 ~~d~~kTvd~ak~~e~aG~~~ltVHGR-tr~---~kg~~~~pad~~~i~~v~~~~~~--ipviaNGnI~~~~d~~~~~~~ 224 (358)
T KOG2335|consen 151 FVDLEKTVDYAKMLEDAGVSLLTVHGR-TRE---QKGLKTGPADWEAIKAVRENVPD--IPVIANGNILSLEDVERCLKY 224 (358)
T ss_pred cCcHHHHHHHHHHHHhCCCcEEEEecc-cHH---hcCCCCCCcCHHHHHHHHHhCcC--CcEEeeCCcCcHHHHHHHHHH
Confidence 111 888999999999999966211 222 122 244 55666666665443 99999999999999999999
Q ss_pred cCCCEEEECccc
Q psy1056 451 LGASTAMMGSLL 462 (590)
Q Consensus 451 lGA~~v~~g~~l 462 (590)
-|||+||.|+-+
T Consensus 225 tG~dGVM~argl 236 (358)
T KOG2335|consen 225 TGADGVMSARGL 236 (358)
T ss_pred hCCceEEecchh
Confidence 899999999655
|
|
| >cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0021 Score=63.97 Aligned_cols=116 Identities=17% Similarity=0.133 Sum_probs=74.1
Q ss_pred HHHHHHHHcCCcEEEEecCCCc--hhhHHHHHHHHH---HhCCCceEEecccc----------CcHH----HHHHHHCCC
Q psy1056 333 NRLKLLSQAGVDVVILDSSQGN--SIYQIEMIKFIK---KEYPDMQVIGGNVL----------FGYQ----PRATLLNFI 393 (590)
Q Consensus 333 e~~~~li~~gad~i~V~~~~G~--~~~~l~~i~~i~---~~~~~vpvi~g~v~----------s~~~----a~~l~~~Gv 393 (590)
..++..++.|++.+.+....+. .....+.++.++ ..+ ++|+++ ++. +.+. ++.+.++|+
T Consensus 80 ~~v~~a~~~Ga~~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~-g~~~ii-e~~~~g~~~~~~~~~~~i~~~~~~a~~~Ga 157 (235)
T cd00958 80 ASVEDAVRLGADAVGVTVYVGSEEEREMLEELARVAAEAHKY-GLPLIA-WMYPRGPAVKNEKDPDLIAYAARIGAELGA 157 (235)
T ss_pred cCHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHc-CCCEEE-EEeccCCcccCccCHHHHHHHHHHHHHHCC
Confidence 3577888999998755444332 223344444444 345 788886 332 2233 455888999
Q ss_pred CEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCC--CCHHH----HHHHHHcCCCEEEECccccCC
Q psy1056 394 YQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGV--QSVGH----VMKALALGASTAMMGSLLAGT 465 (590)
Q Consensus 394 d~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi--~~~~d----i~kalalGA~~v~~g~~l~~~ 465 (590)
|+|.+.... ..+ .+++.++...+|++++||+ .|..| +..++.+||+.+.+|+.+...
T Consensus 158 D~Ik~~~~~------------~~~---~~~~i~~~~~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg~~i~~~ 220 (235)
T cd00958 158 DIVKTKYTG------------DAE---SFKEVVEGCPVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVGRNIFQR 220 (235)
T ss_pred CEEEecCCC------------CHH---HHHHHHhcCCCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEechhhhcC
Confidence 999553110 112 2344444456899999987 66665 888999999999999988533
|
Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies. |
| >PRK00507 deoxyribose-phosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0034 Score=61.62 Aligned_cols=120 Identities=15% Similarity=0.058 Sum_probs=76.7
Q ss_pred HHHHHHHHcCCcEEEEec-----CCCchhhHHHHHHHHHHhCCC--ceEEeccc-cCcHH----HHHHHHCCCCEEEEcc
Q psy1056 333 NRLKLLSQAGVDVVILDS-----SQGNSIYQIEMIKFIKKEYPD--MQVIGGNV-LFGYQ----PRATLLNFIYQIEMIK 400 (590)
Q Consensus 333 e~~~~li~~gad~i~V~~-----~~G~~~~~l~~i~~i~~~~~~--vpvi~g~v-~s~~~----a~~l~~~Gvd~i~v~~ 400 (590)
..++..++.|++-+-+.. ..|+...+.+.+..+++...+ +.+|+-.. .+.++ .+.+.++|+|+|..+
T Consensus 78 ~e~~~Ai~~GA~EiD~Vin~~~~~~g~~~~v~~ei~~v~~~~~~~~lKvIlEt~~L~~e~i~~a~~~~~~agadfIKTs- 156 (221)
T PRK00507 78 FEAKDAIANGADEIDMVINIGALKSGDWDAVEADIRAVVEAAGGAVLKVIIETCLLTDEEKVKACEIAKEAGADFVKTS- 156 (221)
T ss_pred HHHHHHHHcCCceEeeeccHHHhcCCCHHHHHHHHHHHHHhcCCceEEEEeecCcCCHHHHHHHHHHHHHhCCCEEEcC-
Confidence 356677788888765433 235666677788888775422 23332111 14333 344667999988322
Q ss_pred cccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECc
Q psy1056 401 FIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGS 460 (590)
Q Consensus 401 ~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~ 460 (590)
++ |...|.++..+..+.+... .+++|.++|||+|..|+..-+.+||+.+...+
T Consensus 157 -TG-----~~~~gat~~~v~~m~~~~~-~~~~IKasGGIrt~~~a~~~i~aGA~riGtS~ 209 (221)
T PRK00507 157 -TG-----FSTGGATVEDVKLMRETVG-PRVGVKASGGIRTLEDALAMIEAGATRLGTSA 209 (221)
T ss_pred -CC-----CCCCCCCHHHHHHHHHHhC-CCceEEeeCCcCCHHHHHHHHHcCcceEccCc
Confidence 11 2222336666666665553 35999999999999999999999999985544
|
|
| >TIGR00693 thiE thiamine-phosphate pyrophosphorylase | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0019 Score=62.22 Aligned_cols=118 Identities=17% Similarity=0.104 Sum_probs=71.9
Q ss_pred HHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcc-cccccCCCc-cccc
Q psy1056 336 KLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIK-FIKKEYPDM-QVIG 413 (590)
Q Consensus 336 ~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~-~~~~~~~~~-~~~g 413 (590)
+...+.|++.+++... +. .....+...+....+...+.+.+++.++.+.|+|++.++. ..+..+++. ...
T Consensus 67 ~la~~~g~~GvHl~~~--~~-----~~~~~r~~~~~~~~ig~s~h~~~e~~~a~~~g~dyi~~~~v~~t~~k~~~~~~~- 138 (196)
T TIGR00693 67 DLALALGADGVHLGQD--DL-----PASEARALLGPDKIIGVSTHNLEELAEAEAEGADYIGFGPIFPTPTKKDPAPPA- 138 (196)
T ss_pred HHHHHcCCCEEecCcc--cC-----CHHHHHHhcCCCCEEEEeCCCHHHHHHHhHcCCCEEEECCccCCCCCCCCCCCC-
Confidence 4455678888876322 11 1122333332223445578899999999999999996522 111110000 001
Q ss_pred cchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCC
Q psy1056 414 RNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGT 465 (590)
Q Consensus 414 ~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~ 465 (590)
....+.++.+.. .++|+++.||| ++.++.+++.+||++|.+|+.+..+
T Consensus 139 -g~~~l~~~~~~~--~~~pv~a~GGI-~~~~~~~~~~~G~~gva~~~~i~~~ 186 (196)
T TIGR00693 139 -GVELLREIAATS--IDIPIVAIGGI-TLENAAEVLAAGADGVAVVSAIMQA 186 (196)
T ss_pred -CHHHHHHHHHhc--CCCCEEEECCc-CHHHHHHHHHcCCCEEEEhHHhhCC
Confidence 122222332221 24899999999 6999999999999999999998654
|
This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI. |
| >PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0041 Score=67.46 Aligned_cols=132 Identities=11% Similarity=0.058 Sum_probs=88.8
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEecccc-CcHHHHHHHHCCCCEEEE----------
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVL-FGYQPRATLLNFIYQIEM---------- 398 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~-s~~~a~~l~~~Gvd~i~v---------- 398 (590)
+..+.++.. +.|+.++.|.+-..+..|-++.+..+++.. ++|++.|+.. ++.+..++..+|||+|-+
T Consensus 71 d~~~~a~~y-~~gA~aiSVlTe~~~F~Gs~~~l~~vr~~v-~~PvLrKDFiid~~QI~ea~~~GADavLLI~~~L~~~~l 148 (454)
T PRK09427 71 DPAEIARVY-KHYASAISVLTDEKYFQGSFDFLPIVRAIV-TQPILCKDFIIDPYQIYLARYYGADAILLMLSVLDDEQY 148 (454)
T ss_pred CHHHHHHHH-HcCCeEEEEecCcCcCCCCHHHHHHHHHhC-CCCEEeccccCCHHHHHHHHHcCCCchhHHHHhCCHHHH
Confidence 345666666 888999988776655566677888888876 6899988766 888999999999998864
Q ss_pred ----------------cccccccCC----------Ccccccc-chhH----HHHHHHHHhcCCCcEEecCCCCCHHHHHH
Q psy1056 399 ----------------IKFIKKEYP----------DMQVIGR-NGTA----VYRVAEYASRRGVPVIADGGVQSVGHVMK 447 (590)
Q Consensus 399 ----------------~~~~~~~~~----------~~~~~g~-~~~~----l~~~~~~~~~~~v~iia~GGi~~~~di~k 447 (590)
.+++..+.. |..++.. |.+. -.++..... .++.+|+.+||+|+.|+.+
T Consensus 149 ~~l~~~a~~lGl~~lvEvh~~~El~~al~~~a~iiGiNnRdL~t~~vd~~~~~~l~~~ip-~~~~~vseSGI~t~~d~~~ 227 (454)
T PRK09427 149 RQLAAVAHSLNMGVLTEVSNEEELERAIALGAKVIGINNRNLRDLSIDLNRTRELAPLIP-ADVIVISESGIYTHAQVRE 227 (454)
T ss_pred HHHHHHHHHcCCcEEEEECCHHHHHHHHhCCCCEEEEeCCCCccceECHHHHHHHHhhCC-CCcEEEEeCCCCCHHHHHH
Confidence 000000000 1222223 3222 222333332 2577999999999999987
Q ss_pred HHHcCCCEEEECccccCC
Q psy1056 448 ALALGASTAMMGSLLAGT 465 (590)
Q Consensus 448 alalGA~~v~~g~~l~~~ 465 (590)
. ..|||+|.+|..|+.+
T Consensus 228 ~-~~~~davLiG~~lm~~ 244 (454)
T PRK09427 228 L-SPFANGFLIGSSLMAE 244 (454)
T ss_pred H-HhcCCEEEECHHHcCC
Confidence 5 5589999999988543
|
|
| >TIGR01182 eda Entner-Doudoroff aldolase | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0022 Score=62.01 Aligned_cols=111 Identities=20% Similarity=0.188 Sum_probs=79.5
Q ss_pred HHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccc
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQV 411 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~ 411 (590)
.+.++..+++|+++++ +.+.. .+.++..++. ++|++- ++.|+.++..+.++|++.+++-+.....
T Consensus 70 ~~~a~~a~~aGA~Fiv---sP~~~---~~v~~~~~~~--~i~~iP-G~~TptEi~~A~~~Ga~~vKlFPA~~~G------ 134 (204)
T TIGR01182 70 PEQLRQAVDAGAQFIV---SPGLT---PELAKHAQDH--GIPIIP-GVATPSEIMLALELGITALKLFPAEVSG------ 134 (204)
T ss_pred HHHHHHHHHcCCCEEE---CCCCC---HHHHHHHHHc--CCcEEC-CCCCHHHHHHHHHCCCCEEEECCchhcC------
Confidence 4668888999999995 22322 3555655555 788776 8899999999999999999873321100
Q ss_pred cccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 412 IGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 412 ~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
| +.-+..++.-. .++|+++.||| +...+..=|+.||.+|.+|+.|.
T Consensus 135 -G--~~yikal~~pl--p~i~~~ptGGV-~~~N~~~~l~aGa~~vg~Gs~L~ 180 (204)
T TIGR01182 135 -G--VKMLKALAGPF--PQVRFCPTGGI-NLANVRDYLAAPNVACGGGSWLV 180 (204)
T ss_pred -C--HHHHHHHhccC--CCCcEEecCCC-CHHHHHHHHhCCCEEEEEChhhc
Confidence 1 11122333222 25999999999 56899999999999999999885
|
2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida |
| >PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0013 Score=68.19 Aligned_cols=130 Identities=20% Similarity=0.200 Sum_probs=76.3
Q ss_pred ccchhHH-HHHHHHHHcCCcEEEEecC--------CC-------chhhHHHHHHHHHHhCCCceEEecc---cc-----C
Q psy1056 326 GTREADK-NRLKLLSQAGVDVVILDSS--------QG-------NSIYQIEMIKFIKKEYPDMQVIGGN---VL-----F 381 (590)
Q Consensus 326 ~~~~~~~-e~~~~li~~gad~i~V~~~--------~G-------~~~~~l~~i~~i~~~~~~vpvi~g~---v~-----s 381 (590)
+.+.+.. +.++.+.+.+++.|-+|.. .| ++..+.+.++.+++.. ++||-+|- .. +
T Consensus 62 g~~~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~-~~pvsvKiR~g~~~~~~~~ 140 (309)
T PF01207_consen 62 GNDPEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAV-PIPVSVKIRLGWDDSPEET 140 (309)
T ss_dssp -S-HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH--SSEEEEEEESECT--CHHH
T ss_pred eccHHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhccc-ccceEEecccccccchhHH
Confidence 4444444 4455444559999988851 12 2344568888888887 57887651 11 4
Q ss_pred cHHHHHHHHCCCCEEEEcccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHc-CCCEEEEC
Q psy1056 382 GYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALAL-GASTAMMG 459 (590)
Q Consensus 382 ~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalal-GA~~v~~g 459 (590)
.+-++.+.++|+++|-|-..+..+ .+. |. ..+.+.++. ...++|||+-|||.|..|+.+.+.. |+|+||+|
T Consensus 141 ~~~~~~l~~~G~~~i~vH~Rt~~q--~~~--~~a~w~~i~~i~---~~~~ipvi~NGdI~s~~d~~~~~~~tg~dgvMig 213 (309)
T PF01207_consen 141 IEFARILEDAGVSAITVHGRTRKQ--RYK--GPADWEAIAEIK---EALPIPVIANGDIFSPEDAERMLEQTGADGVMIG 213 (309)
T ss_dssp HHHHHHHHHTT--EEEEECS-TTC--CCT--S---HHHHHHCH---HC-TSEEEEESS--SHHHHHHHCCCH-SSEEEES
T ss_pred HHHHHHhhhcccceEEEecCchhh--cCC--cccchHHHHHHh---hcccceeEEcCccCCHHHHHHHHHhcCCcEEEEc
Confidence 667788889999999663222222 011 11 333343443 3456999999999999999999987 99999999
Q ss_pred cccc
Q psy1056 460 SLLA 463 (590)
Q Consensus 460 ~~l~ 463 (590)
+...
T Consensus 214 Rgal 217 (309)
T PF01207_consen 214 RGAL 217 (309)
T ss_dssp HHHC
T ss_pred hhhh
Confidence 7653
|
Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y. |
| >TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0035 Score=62.39 Aligned_cols=63 Identities=14% Similarity=0.007 Sum_probs=49.8
Q ss_pred HHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEE
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v 398 (590)
.+.++...+.|++.+|+-.- |.. -.+.++.+.+.. ++|+.+|+..+.++++.+.++||+.+.+
T Consensus 41 ~~~A~~~~~~Ga~~lHvVDL-g~~--n~~~i~~i~~~~-~~~v~vGGGIr~e~v~~~l~aGa~rVvI 103 (253)
T TIGR02129 41 SYYAKLYKDDGVKGCHVIML-GPN--NDDAAKEALHAY-PGGLQVGGGINDTNAQEWLDEGASHVIV 103 (253)
T ss_pred HHHHHHHHHcCCCEEEEEEC-CCC--cHHHHHHHHHhC-CCCEEEeCCcCHHHHHHHHHcCCCEEEE
Confidence 68889999999999886433 433 246777887776 6888877666569999999999999977
|
This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut. |
| >PRK10605 N-ethylmaleimide reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.003 Score=66.96 Aligned_cols=127 Identities=14% Similarity=0.024 Sum_probs=83.1
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCC--------------------c---h-hhHHHHHHHHHHhCCCceEEec--------
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQG--------------------N---S-IYQIEMIKFIKKEYPDMQVIGG-------- 377 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G--------------------~---~-~~~l~~i~~i~~~~~~vpvi~g-------- 377 (590)
...+.+..+.++|.|.+.|+.++| . + ++.++.++.+++..++-++.++
T Consensus 160 ~f~~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~~igvRis~~~~~~ 239 (362)
T PRK10605 160 DFRQAIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWGADRIGIRISPLGTFN 239 (362)
T ss_pred HHHHHHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCCeEEEEECCccccc
Confidence 344577888899999999987552 1 1 4457889999998753334321
Q ss_pred ---cccCcHH-----HHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHH
Q psy1056 378 ---NVLFGYQ-----PRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKAL 449 (590)
Q Consensus 378 ---~v~s~~~-----a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kal 449 (590)
...+.++ ++.|.++|+|+|.|+...... +-++.. .. .....+..++||++.|++ ++.++.+++
T Consensus 240 ~~~~G~~~~e~~~~~~~~L~~~giD~i~vs~~~~~~-----~~~~~~-~~--~~~ik~~~~~pv~~~G~~-~~~~ae~~i 310 (362)
T PRK10605 240 NVDNGPNEEADALYLIEQLGKRGIAYLHMSEPDWAG-----GEPYSD-AF--REKVRARFHGVIIGAGAY-TAEKAETLI 310 (362)
T ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCEEEeccccccC-----CccccH-HH--HHHHHHHCCCCEEEeCCC-CHHHHHHHH
Confidence 1124444 567777999999885321100 001111 11 111222346899999996 999999999
Q ss_pred HcC-CCEEEECccccCC
Q psy1056 450 ALG-ASTAMMGSLLAGT 465 (590)
Q Consensus 450 alG-A~~v~~g~~l~~~ 465 (590)
+-| ||+|.+|++|..-
T Consensus 311 ~~G~~D~V~~gR~~iad 327 (362)
T PRK10605 311 GKGLIDAVAFGRDYIAN 327 (362)
T ss_pred HcCCCCEEEECHHhhhC
Confidence 998 9999999988644
|
|
| >PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0015 Score=62.17 Aligned_cols=128 Identities=16% Similarity=0.174 Sum_probs=80.1
Q ss_pred HHHHHHHHcCCcEEEEec-----CCCch---hhHHHHHHHHHHhCCCceEEe--ccccC----cHHHHHHHHCCCCEEEE
Q psy1056 333 NRLKLLSQAGVDVVILDS-----SQGNS---IYQIEMIKFIKKEYPDMQVIG--GNVLF----GYQPRATLLNFIYQIEM 398 (590)
Q Consensus 333 e~~~~li~~gad~i~V~~-----~~G~~---~~~l~~i~~i~~~~~~vpvi~--g~v~s----~~~a~~l~~~Gvd~i~v 398 (590)
+.....+++|++.+.+-. .+|.. +.++++.++.|+.+|++++-+ -.+.. .+-|.+|.++|+|.|--
T Consensus 72 ~~f~~aV~AGAdliEIGNfDsFY~qGr~f~a~eVL~Lt~~tR~LLP~~~LsVTVPHiL~ld~Qv~LA~~L~~~GaDiIQT 151 (242)
T PF04481_consen 72 ELFVAAVKAGADLIEIGNFDSFYAQGRRFSAEEVLALTRETRSLLPDITLSVTVPHILPLDQQVQLAEDLVKAGADIIQT 151 (242)
T ss_pred HHHHHHHHhCCCEEEecchHHHHhcCCeecHHHHHHHHHHHHHhCCCCceEEecCccccHHHHHHHHHHHHHhCCcEEEc
Confidence 445567889999998853 34533 556888888999999887764 22222 34567889999998833
Q ss_pred cccccccCCCccc-ccc---chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 399 IKFIKKEYPDMQV-IGR---NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 399 ~~~~~~~~~~~~~-~g~---~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
.-.++.. +-..| -|. ...++...-...+..++||+++.|+.. .-+=-|+++||++|.+|+.+
T Consensus 152 EGgtss~-p~~~g~lglIekaapTLAaay~ISr~v~iPVlcASGlS~-vT~PmAiaaGAsGVGVGSav 217 (242)
T PF04481_consen 152 EGGTSSK-PTSPGILGLIEKAAPTLAAAYAISRAVSIPVLCASGLSA-VTAPMAIAAGASGVGVGSAV 217 (242)
T ss_pred CCCCCCC-CCCcchHHHHHHHhHHHHHHHHHHhccCCceEeccCcch-hhHHHHHHcCCcccchhHHh
Confidence 1111110 00001 111 111222223333445799999999955 44556999999999999988
|
As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis. |
| >PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0022 Score=63.20 Aligned_cols=34 Identities=29% Similarity=0.597 Sum_probs=32.0
Q ss_pred CCC-cEEecCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 429 RGV-PVIADGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 429 ~~v-~iia~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
.+. |++..|||+++.++.+++..|||.|.+|+.+
T Consensus 182 ~~~~pvivGGGIrs~e~a~~~l~~GAD~VVVGSai 216 (232)
T PRK04169 182 LDITPLIYGGGIRSPEQARELMAAGADTIVVGNII 216 (232)
T ss_pred cCCCcEEEECCCCCHHHHHHHHHhCCCEEEEChHH
Confidence 456 9999999999999999999999999999988
|
|
| >COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00057 Score=74.17 Aligned_cols=134 Identities=16% Similarity=0.213 Sum_probs=95.4
Q ss_pred EEEEecchhhcccc-ccccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEc-CCCceEEEEeeccccccc
Q psy1056 229 LGIVTSRDVDFLEN-SANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILN-DKGELIALIARTDLKKSR 306 (590)
Q Consensus 229 vGivt~~Dl~~~~~-~~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd-~~g~l~Giit~~dll~~~ 306 (590)
-|.++...-....+ ....+.+++++|+|+.++.+++.+.+++++.+.+.+++++++||.+ +.++++|++..+|++...
T Consensus 186 ~g~~~~~E~~mi~~v~~l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~ 265 (429)
T COG1253 186 EGVLEEEEREMINNVLDLDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRAL 265 (429)
T ss_pred cCCcCHHHHHHHHHHhccCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHH
Confidence 35555555543222 2234689999999999999999999999999999999999999999 558999999999999987
Q ss_pred CCCCC-C-cc--cCCceEEeEeeccchhHHHHHHHHHHcCCcEEEEecCCCchhhH---HHHHHHHH
Q psy1056 307 DYPDS-S-KD--ENNQLIVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQ---IEMIKFIK 366 (590)
Q Consensus 307 ~~~~~-~-~d--~~~~l~v~a~i~~~~~~~e~~~~li~~gad~i~V~~~~G~~~~~---l~~i~~i~ 366 (590)
..... . .. ..+.++ +....+..+.++.+.+.......|....|...|+ .+.++.+.
T Consensus 266 ~~~~~~~~~~~~~~~~~~----Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~GlVTleDIiEeIv 328 (429)
T COG1253 266 LDGQSDLDLRVLVRPPLF----VPETLSLSDLLEEFREERTHMAIVVDEYGGVEGLVTLEDIIEEIV 328 (429)
T ss_pred hcCccccchhhcccCCeE----ecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeEEEeEHHHHHHHHh
Confidence 65431 1 10 012222 2334567788888988888876666665666664 34555543
|
|
| >PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P) | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0024 Score=62.54 Aligned_cols=123 Identities=20% Similarity=0.208 Sum_probs=71.0
Q ss_pred HHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEE-cccccccCC----
Q psy1056 333 NRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEM-IKFIKKEYP---- 407 (590)
Q Consensus 333 e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v-~~~~~~~~~---- 407 (590)
+.++.+.+.|.|++.|-.+. .....-+.+..+++.+ ++|++. +.++.... .-++|++-+ +.-+++...
T Consensus 23 ~~~~~~~~~gtDai~VGGS~-~~~~~d~vv~~ik~~~-~lPvil-fPg~~~~v----s~~aDail~~svlNs~n~~~iig 95 (230)
T PF01884_consen 23 EALEAACESGTDAIIVGGSD-TGVTLDNVVALIKRVT-DLPVIL-FPGSPSQV----SPGADAILFPSVLNSRNPYWIIG 95 (230)
T ss_dssp HHHHHHHCTT-SEEEEE-ST-HCHHHHHHHHHHHHHS-SS-EEE-ETSTCCG------TTSSEEEEEEETTBSSTTTTTH
T ss_pred HHHHHHHhcCCCEEEECCCC-CccchHHHHHHHHhcC-CCCEEE-eCCChhhc----CcCCCEEEEEEEecCCCcchHhh
Confidence 45566688899999997776 2222344556666665 899886 45555443 356888865 111111000
Q ss_pred ---------------------------------------------------------C----cccccc-chhHH-HHHHH
Q psy1056 408 ---------------------------------------------------------D----MQVIGR-NGTAV-YRVAE 424 (590)
Q Consensus 408 ---------------------------------------------------------~----~~~~g~-~~~~l-~~~~~ 424 (590)
+ +-..|. +.... .++.+
T Consensus 96 ~~~~aa~~~~~~~~e~ip~gYivi~~g~~v~~v~~a~pi~~~~~~iaa~~alA~~~~g~~~iYLEaGSGa~~~v~~~v~~ 175 (230)
T PF01884_consen 96 AQVEAAPLIKKLGLEVIPTGYIVINPGSKVARVTGARPIPLDKPEIAAAAALAAEYLGMPIIYLEAGSGAYGPVPEEVIA 175 (230)
T ss_dssp HHHHHHHHCHHHHCCEEEEEEEEESTTSHHHHHTTB-----SHHHHHHHHHHHHHHTT-SEEEEE--TTSSS-HHHHHHH
T ss_pred HHHHHHHHHHhhcceecceEEEEECCCCceEEeecceecCCCcHHHHHHHHHHHHHhCCCEEEEEeCCCCCCCccHHHHH
Confidence 0 001122 22233 23333
Q ss_pred HHhc-CCCcEEecCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 425 YASR-RGVPVIADGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 425 ~~~~-~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
+.+. .+.|+|..||||++.++.+++..|||.|++|..|
T Consensus 176 ~~~~~~~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn~i 214 (230)
T PF01884_consen 176 AVKKLSDIPLIVGGGIRSPEQAREMAEAGADTIVVGNAI 214 (230)
T ss_dssp HHHHSSSSEEEEESS--SHHHHHHHHCTTSSEEEESCHH
T ss_pred HHHhcCCccEEEeCCcCCHHHHHHHHHCCCCEEEECCEE
Confidence 3322 3699999999999999999999999999999988
|
This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B. |
| >cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0033 Score=66.83 Aligned_cols=131 Identities=12% Similarity=0.006 Sum_probs=83.4
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCC--------------------c----hhhHHHHHHHHHHhCC-CceEEec----c--
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQG--------------------N----SIYQIEMIKFIKKEYP-DMQVIGG----N-- 378 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G--------------------~----~~~~l~~i~~i~~~~~-~vpvi~g----~-- 378 (590)
+..+.+..+.++|.|.+.|+.++| . ..+.++.++.+++..+ +.+|.++ +
T Consensus 151 ~f~~AA~ra~~aGfDgVEih~ahGyLl~QFlSp~~N~RtD~yGGslenR~Rf~~eii~aIr~~vg~~~~v~vRls~~~~~ 230 (370)
T cd02929 151 WYVDAALRARDAGFDIVYVYAAHGYLPLQFLLPRYNKRTDEYGGSLENRARFWRETLEDTKDAVGDDCAVATRFSVDELI 230 (370)
T ss_pred HHHHHHHHHHHcCCCEEEEcccccchHHHhhCccccCCccccCCChHhhhHHHHHHHHHHHHHcCCCceEEEEecHHHhc
Confidence 444567788889999999987552 1 1345788999999874 5666642 1
Q ss_pred ----ccCcHHH----HHHHHCCCCEEEEcccccccCC---CccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHH
Q psy1056 379 ----VLFGYQP----RATLLNFIYQIEMIKFIKKEYP---DMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMK 447 (590)
Q Consensus 379 ----v~s~~~a----~~l~~~Gvd~i~v~~~~~~~~~---~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~k 447 (590)
..+.+++ +.|.+ .+|++.|+........ .+...|+.......+++ ..++|||+.|||+++.++.+
T Consensus 231 ~~~g~~~~~e~~~~~~~l~~-~~D~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~ik~---~~~~pvi~~G~i~~~~~~~~ 306 (370)
T cd02929 231 GPGGIESEGEGVEFVEMLDE-LPDLWDVNVGDWANDGEDSRFYPEGHQEPYIKFVKQ---VTSKPVVGVGRFTSPDKMVE 306 (370)
T ss_pred CCCCCCCHHHHHHHHHHHHh-hCCEEEecCCCccccccccccCCccccHHHHHHHHH---HCCCCEEEeCCCCCHHHHHH
Confidence 1234443 34433 4899988543221100 01111111111222332 34799999999999999999
Q ss_pred HHHcC-CCEEEECccccC
Q psy1056 448 ALALG-ASTAMMGSLLAG 464 (590)
Q Consensus 448 alalG-A~~v~~g~~l~~ 464 (590)
+|+.| ||+|++|++|.+
T Consensus 307 ~l~~g~~D~V~~gR~~la 324 (370)
T cd02929 307 VVKSGILDLIGAARPSIA 324 (370)
T ss_pred HHHcCCCCeeeechHhhh
Confidence 99988 999999998853
|
TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine. |
| >PLN02617 imidazole glycerol phosphate synthase hisHF | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0053 Score=67.98 Aligned_cols=182 Identities=17% Similarity=0.063 Sum_probs=109.1
Q ss_pred CHHHHHHHHHhcCCCcceEEcCCCceEEEEee---cccccccCCCCCCcccCCceEEeEeeccc-------hhHHHHHHH
Q psy1056 268 SLEEANVILEKSKKGKLPILNDKGELIALIAR---TDLKKSRDYPDSSKDENNQLIVGAAIGTR-------EADKNRLKL 337 (590)
Q Consensus 268 ~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~---~dll~~~~~~~~~~d~~~~l~v~a~i~~~-------~~~~e~~~~ 337 (590)
...+..+.+.+.+.+.|-++|=++..-|--.. .++++...... .-++-++..+... -+..+.++.
T Consensus 268 dPve~a~~y~~~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~~-----~ip~~vGGGIr~~~d~~~~~~~~~e~~~~ 342 (538)
T PLN02617 268 KPVELAGQYYKDGADEVAFLNITGFRDFPLGDLPMLEVLRRASENV-----FVPLTVGGGIRDFTDANGRYYSSLEVASE 342 (538)
T ss_pred CHHHHHHHHHHcCCCEEEEEECCCCcCCcccchhHHHHHHHHHhhC-----CCCEEEcCCccccccccccccchHHHHHH
Confidence 34567778889999999999855432222222 34444433211 1223333333322 234688999
Q ss_pred HHHcCCcEEEEecCCC-c--------hhhHHHHHHHHHHhCCCceEEe----cc--------------------------
Q psy1056 338 LSQAGVDVVILDSSQG-N--------SIYQIEMIKFIKKEYPDMQVIG----GN-------------------------- 378 (590)
Q Consensus 338 li~~gad~i~V~~~~G-~--------~~~~l~~i~~i~~~~~~vpvi~----g~-------------------------- 378 (590)
++++||+-+.+++.-= + ...-.+.++.+.+.|++-.+++ +.
T Consensus 343 ~l~~GadkV~i~s~Av~~~~~~~~~~~~~~p~~i~~~~~~fg~q~ivvsiD~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (538)
T PLN02617 343 YFRSGADKISIGSDAVYAAEEYIASGVKTGKTSIEQISRVYGNQAVVVSIDPRRVYVKDPSDVPFKTVKVTNPGPNGEEY 422 (538)
T ss_pred HHHcCCCEEEEChHHHhChhhhhccccccCHHHHHHHHHHcCCceEEEEEecCcCcccCccccccccccccccCcCcccc
Confidence 9999999999976210 0 0001366777777774322221 11
Q ss_pred ---------------ccCcHHHHHHHHCCCCEEEE-cccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCH
Q psy1056 379 ---------------VLFGYQPRATLLNFIYQIEM-IKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSV 442 (590)
Q Consensus 379 ---------------v~s~~~a~~l~~~Gvd~i~v-~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~ 442 (590)
+.-.+-++++.+.|+..|.+ ++. +. | +.-|+....+..+. ...++||||+||+.++
T Consensus 423 ~~~~v~~~gg~~~~~~~~~~~~~~~~~~Gageil~t~id--~D--G-t~~G~d~~l~~~v~---~~~~ipviasGG~g~~ 494 (538)
T PLN02617 423 AWYQCTVKGGREGRPIGAYELAKAVEELGAGEILLNCID--CD--G-QGKGFDIELVKLVS---DAVTIPVIASSGAGTP 494 (538)
T ss_pred eEEEEEEecCcccCCCCHHHHHHHHHhcCCCEEEEeecc--cc--c-cccCcCHHHHHHHH---hhCCCCEEEECCCCCH
Confidence 11235578888899998844 221 11 1 11233333333333 3357999999999999
Q ss_pred HHHHHHHH-cCCCEEEECccc
Q psy1056 443 GHVMKALA-LGASTAMMGSLL 462 (590)
Q Consensus 443 ~di~kala-lGA~~v~~g~~l 462 (590)
.|+..++. .||+++.+|+.|
T Consensus 495 ~d~~~~~~~~~~~a~~aa~~f 515 (538)
T PLN02617 495 EHFSDVFSKTNASAALAAGIF 515 (538)
T ss_pred HHHHHHHhcCCccEEEEEeee
Confidence 99999997 679999999988
|
|
| >PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside [] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00093 Score=70.30 Aligned_cols=134 Identities=19% Similarity=0.153 Sum_probs=82.8
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCC--------------------ch----hhHHHHHHHHHHhCC-CceEEec-------
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQG--------------------NS----IYQIEMIKFIKKEYP-DMQVIGG------- 377 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G--------------------~~----~~~l~~i~~i~~~~~-~vpvi~g------- 377 (590)
+..+.+..+.++|.|.+.|+.++| .. ++.++.++.+|+..+ +.||.++
T Consensus 150 ~f~~AA~~A~~AGfDGVEIH~ahGyLl~qFLSp~~N~RtDeYGGs~ENR~Rf~~Eii~aIr~~vg~d~~v~~Rls~~~~~ 229 (341)
T PF00724_consen 150 DFAQAARRAKEAGFDGVEIHAAHGYLLSQFLSPLTNRRTDEYGGSLENRARFLLEIIEAIREAVGPDFPVGVRLSPDDFV 229 (341)
T ss_dssp HHHHHHHHHHHTT-SEEEEEESTTSHHHHHHSTTT---SSTTSSSHHHHHHHHHHHHHHHHHHHTGGGEEEEEEETTCSS
T ss_pred HHHHHHHHHHHhccCeEeecccchhhhhheeeeccCCCchhhhhhhchhhHHHHHHHHHHHHHhcCCceEEEEEeeeccc
Confidence 445578888899999999997552 11 345788999998874 4566643
Q ss_pred -cccCcHH----HHHHHHCCCCEEEEccccccc--CC-Ccccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHH
Q psy1056 378 -NVLFGYQ----PRATLLNFIYQIEMIKFIKKE--YP-DMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKA 448 (590)
Q Consensus 378 -~v~s~~~----a~~l~~~Gvd~i~v~~~~~~~--~~-~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~ka 448 (590)
+..+.++ ++.+.++|+|+++++...... .. ....... ....+..+....+..++|||+.|||+++..+.++
T Consensus 230 ~~g~~~~e~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ik~~~~~pvi~~G~i~~~~~ae~~ 309 (341)
T PF00724_consen 230 EGGITLEETIEIAKLLEELGVDFLDVSHGSYVHWSEPRPSPPFDFEPGYNLDLAEAIKKAVKIPVIGVGGIRTPEQAEKA 309 (341)
T ss_dssp TTSHHSHHHHHHHHHHHHHHHTTEEEEEESEEEEEBTSSTTTTTTTTTTTHHHHHHHHHHHSSEEEEESSTTHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHHHhhhhccccccccccccccccccccccccchhhhhhhhhhhhcCceEEEEeeecchhhhHHH
Confidence 1113333 577778999988762111100 00 0001111 1111111222222236899999999999999999
Q ss_pred HHcC-CCEEEECcccc
Q psy1056 449 LALG-ASTAMMGSLLA 463 (590)
Q Consensus 449 lalG-A~~v~~g~~l~ 463 (590)
++.| ||+|.+|++|.
T Consensus 310 l~~g~~DlV~~gR~~l 325 (341)
T PF00724_consen 310 LEEGKADLVAMGRPLL 325 (341)
T ss_dssp HHTTSTSEEEESHHHH
T ss_pred HhcCCceEeeccHHHH
Confidence 9998 99999999885
|
It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A .... |
| >PRK07226 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0028 Score=64.33 Aligned_cols=116 Identities=16% Similarity=0.147 Sum_probs=72.3
Q ss_pred HHHHHHHHcCCcEEEEecCCCc--hhhHHHHHHHHH---HhCCCceEEec---------cccCcHH----HHHHHHCCCC
Q psy1056 333 NRLKLLSQAGVDVVILDSSQGN--SIYQIEMIKFIK---KEYPDMQVIGG---------NVLFGYQ----PRATLLNFIY 394 (590)
Q Consensus 333 e~~~~li~~gad~i~V~~~~G~--~~~~l~~i~~i~---~~~~~vpvi~g---------~v~s~~~----a~~l~~~Gvd 394 (590)
..++.+++.|++.+.+....|. ...+.+.+..++ ..+ ++|+++- +..+.+. ++.+.++|||
T Consensus 97 ~~ve~A~~~Gad~v~~~~~~g~~~~~~~~~~~~~v~~~~~~~-g~pl~vi~~~~g~~~e~~~~~~~i~~a~~~a~e~GAD 175 (267)
T PRK07226 97 GTVEEAIKLGADAVSVHVNVGSETEAEMLEDLGEVAEECEEW-GMPLLAMMYPRGPGIKNEYDPEVVAHAARVAAELGAD 175 (267)
T ss_pred ecHHHHHHcCCCEEEEEEecCChhHHHHHHHHHHHHHHHHHc-CCcEEEEEecCCCccCCCccHHHHHHHHHHHHHHCCC
Confidence 3567789999998777654432 223444444444 445 6777652 2223333 5777889999
Q ss_pred EEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCC--CHHHHH----HHHHcCCCEEEECccccC
Q psy1056 395 QIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQ--SVGHVM----KALALGASTAMMGSLLAG 464 (590)
Q Consensus 395 ~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~--~~~di~----kalalGA~~v~~g~~l~~ 464 (590)
+|+.+.. + ... .+++.++...+||+++|||+ |..++. .++.+||+++.+|+.+..
T Consensus 176 ~vKt~~~---------~---~~~---~l~~~~~~~~ipV~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~ 236 (267)
T PRK07226 176 IVKTNYT---------G---DPE---SFREVVEGCPVPVVIAGGPKTDTDREFLEMVRDAMEAGAAGVAVGRNVFQ 236 (267)
T ss_pred EEeeCCC---------C---CHH---HHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEehhhhhhc
Confidence 9955411 0 112 23344433469999999999 655544 456999999999988743
|
|
| >TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0036 Score=61.14 Aligned_cols=33 Identities=24% Similarity=0.457 Sum_probs=31.5
Q ss_pred CCcEEecCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 430 GVPVIADGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 430 ~v~iia~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
++|++..||||++.++.+++.+|||.|++|+.+
T Consensus 179 ~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs~~ 211 (223)
T TIGR01768 179 KARLFVGGGIRSVEKAREMAEAGADTIVTGNVI 211 (223)
T ss_pred CCCEEEecCCCCHHHHHHHHHcCCCEEEECcHH
Confidence 599999999999999999999999999999977
|
This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired. |
| >PRK02615 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.003 Score=66.09 Aligned_cols=118 Identities=16% Similarity=0.154 Sum_probs=74.7
Q ss_pred HHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcc-cccccCCCccccc
Q psy1056 335 LKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIK-FIKKEYPDMQVIG 413 (590)
Q Consensus 335 ~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~-~~~~~~~~~~~~g 413 (590)
.+.....+++.+|+. +.+. .+...+..+..-.++-..+.+.+++..+.+.|+|||-++. ..+..+++....|
T Consensus 210 vdlAl~~~aDGVHLg--q~dl-----~~~~aR~llg~~~iIG~S~Hs~~e~~~A~~~GaDYI~lGPvf~T~tKp~~~~~G 282 (347)
T PRK02615 210 VDIALAVDADGVHLG--QEDL-----PLAVARQLLGPEKIIGRSTTNPEEMAKAIAEGADYIGVGPVFPTPTKPGKAPAG 282 (347)
T ss_pred HHHHHHcCCCEEEeC--hhhc-----CHHHHHHhcCCCCEEEEecCCHHHHHHHHHcCCCEEEECCCcCCCCCCCCCCCC
Confidence 334455678888762 2211 1233344442334555577799999999999999997732 2222211111122
Q ss_pred cchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCC
Q psy1056 414 RNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGT 465 (590)
Q Consensus 414 ~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~ 465 (590)
+..+..++....+|++|-||| ++.++.+.++.||++|.+++.+..+
T Consensus 283 -----le~l~~~~~~~~iPv~AiGGI-~~~ni~~l~~~Ga~gVAvisaI~~a 328 (347)
T PRK02615 283 -----LEYLKYAAKEAPIPWFAIGGI-DKSNIPEVLQAGAKRVAVVRAIMGA 328 (347)
T ss_pred -----HHHHHHHHHhCCCCEEEECCC-CHHHHHHHHHcCCcEEEEeHHHhCC
Confidence 222333333456999999999 6899999999999999999888643
|
|
| >TIGR01163 rpe ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0067 Score=58.98 Aligned_cols=125 Identities=15% Similarity=0.114 Sum_probs=74.9
Q ss_pred HHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEE-cccccccCCCcc
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEM-IKFIKKEYPDMQ 410 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v-~~~~~~~~~~~~ 410 (590)
.+.++.+.+.|++.++++... .......++.+++.-.. +.+.-+..+..+..+....++|++-+ +...+ .+
T Consensus 69 ~~~~~~~~~~gadgv~vh~~~--~~~~~~~~~~~~~~g~~-~~~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g-----~t 140 (210)
T TIGR01163 69 DRYIEDFAEAGADIITVHPEA--SEHIHRLLQLIKDLGAK-AGIVLNPATPLEFLEYVLPDVDLVLLMSVNPG-----FG 140 (210)
T ss_pred HHHHHHHHHcCCCEEEEccCC--chhHHHHHHHHHHcCCc-EEEEECCCCCHHHHHHHHhhCCEEEEEEEcCC-----CC
Confidence 356777889999998886543 22334555666555322 22222333455554555668998743 22111 22
Q ss_pred c--ccc-chhHHHHHHHHHhcC--CCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCC
Q psy1056 411 V--IGR-NGTAVYRVAEYASRR--GVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGT 465 (590)
Q Consensus 411 ~--~g~-~~~~l~~~~~~~~~~--~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~ 465 (590)
| |.+ ....+.++++..... ++|++++|||+ +..+.+++..|||.+.+|+.+..+
T Consensus 141 g~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~GGI~-~env~~l~~~gad~iivgsai~~~ 199 (210)
T TIGR01163 141 GQKFIPDTLEKIREVRKMIDENGLSILIEVDGGVN-DDNARELAEAGADILVAGSAIFGA 199 (210)
T ss_pred cccccHHHHHHHHHHHHHHHhcCCCceEEEECCcC-HHHHHHHHHcCCCEEEEChHHhCC
Confidence 2 122 222333444443321 37899999995 799999999999999999998543
|
This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants. |
| >cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0036 Score=60.83 Aligned_cols=116 Identities=15% Similarity=0.051 Sum_probs=78.4
Q ss_pred HHHHHHHHcCCcEEEEecCC-----CchhhHHHHHHHHHHhCCCceEE--ecccc-CcH----HHHHHHHCCCCEEEEcc
Q psy1056 333 NRLKLLSQAGVDVVILDSSQ-----GNSIYQIEMIKFIKKEYPDMQVI--GGNVL-FGY----QPRATLLNFIYQIEMIK 400 (590)
Q Consensus 333 e~~~~li~~gad~i~V~~~~-----G~~~~~l~~i~~i~~~~~~vpvi--~g~v~-s~~----~a~~l~~~Gvd~i~v~~ 400 (590)
..++..++.|++.+.+...- |+...+.+.+..+++...+.|+. +-... +.+ .++.+.++|+|+|+.+
T Consensus 73 ~eve~A~~~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l~~~~i~~a~ria~e~GaD~IKTs- 151 (203)
T cd00959 73 AEAREAIADGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLLTDEEIIKACEIAIEAGADFIKTS- 151 (203)
T ss_pred HHHHHHHHcCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEcC-
Confidence 35777888899988765543 44455777888888775455543 22111 323 3567788999999443
Q ss_pred cccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEE
Q psy1056 401 FIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTA 456 (590)
Q Consensus 401 ~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v 456 (590)
++ +...|.++..+..+++.++ .++||-++|||+|..++..-+.+||+-.
T Consensus 152 -TG-----~~~~~at~~~v~~~~~~~~-~~v~ik~aGGikt~~~~l~~~~~g~~ri 200 (203)
T cd00959 152 -TG-----FGPGGATVEDVKLMKEAVG-GRVGVKAAGGIRTLEDALAMIEAGATRI 200 (203)
T ss_pred -CC-----CCCCCCCHHHHHHHHHHhC-CCceEEEeCCCCCHHHHHHHHHhChhhc
Confidence 11 2222235555555666655 4699999999999999999999999866
|
DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction. |
| >cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0021 Score=65.28 Aligned_cols=89 Identities=12% Similarity=0.086 Sum_probs=65.8
Q ss_pred HHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcC--CCcEEec
Q psy1056 359 IEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRR--GVPVIAD 436 (590)
Q Consensus 359 l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~--~v~iia~ 436 (590)
.+.++.+|+..|+.++. -++-|.+++.++.++|+|+|-+. .- .++.+.++.+.++.. ++|++|+
T Consensus 171 ~~av~~~R~~~~~~~Ig-Vev~t~eea~~A~~~gaD~I~ld----~~---------~p~~l~~~~~~~~~~~~~i~i~As 236 (272)
T cd01573 171 LKALARLRATAPEKKIV-VEVDSLEEALAAAEAGADILQLD----KF---------SPEELAELVPKLRSLAPPVLLAAA 236 (272)
T ss_pred HHHHHHHHHhCCCCeEE-EEcCCHHHHHHHHHcCCCEEEEC----CC---------CHHHHHHHHHHHhccCCCceEEEE
Confidence 56778888877766543 48889999999999999999331 11 222333444433332 5899999
Q ss_pred CCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 437 GGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 437 GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
||| |...+..-.+.|||++++|..+
T Consensus 237 GGI-~~~ni~~~~~~Gvd~I~vsai~ 261 (272)
T cd01573 237 GGI-NIENAAAYAAAGADILVTSAPY 261 (272)
T ss_pred CCC-CHHHHHHHHHcCCcEEEEChhh
Confidence 999 8999999999999999888765
|
In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. |
| >PRK11573 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00067 Score=73.10 Aligned_cols=116 Identities=11% Similarity=0.173 Sum_probs=83.7
Q ss_pred cccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCC-CceEEEEeecccccccCCCCC-C-c---cc-CCc
Q psy1056 246 MDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDK-GELIALIARTDLKKSRDYPDS-S-K---DE-NNQ 318 (590)
Q Consensus 246 ~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~-g~l~Giit~~dll~~~~~~~~-~-~---d~-~~~ 318 (590)
.+.+++++|+|+.++.+++.+.+++++++.+.+++++++||.+++ ++++|++..+|++........ . . +. .+.
T Consensus 185 ~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~~~~~~~~l~~~~r~~ 264 (413)
T PRK11573 185 EKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKEFTKENMLRAADEI 264 (413)
T ss_pred CCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhccCcCCHHHHHhhccCC
Confidence 468899999999999999999999999999999999999998765 899999999999864321110 0 0 00 011
Q ss_pred eEEeEeeccchhHHHHHHHHHHcCCcEEEEecCCCchhhHH---HHHHHH
Q psy1056 319 LIVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQI---EMIKFI 365 (590)
Q Consensus 319 l~v~a~i~~~~~~~e~~~~li~~gad~i~V~~~~G~~~~~l---~~i~~i 365 (590)
+ .+.......+.++.+...+.....|-...|...|++ +.++++
T Consensus 265 ~----~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiVTleDilEei 310 (413)
T PRK11573 265 Y----FVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEI 310 (413)
T ss_pred e----EeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEeeHHHHHHHH
Confidence 1 233445566788888888887766656566666643 444444
|
|
| >TIGR00126 deoC deoxyribose-phosphate aldolase | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.004 Score=60.64 Aligned_cols=117 Identities=16% Similarity=0.082 Sum_probs=77.9
Q ss_pred HHHHHHHHcCCcEEEEecC-----CCchhhHHHHHHHHHHhCCCceE--Eeccc-cCcH----HHHHHHHCCCCEEEEcc
Q psy1056 333 NRLKLLSQAGVDVVILDSS-----QGNSIYQIEMIKFIKKEYPDMQV--IGGNV-LFGY----QPRATLLNFIYQIEMIK 400 (590)
Q Consensus 333 e~~~~li~~gad~i~V~~~-----~G~~~~~l~~i~~i~~~~~~vpv--i~g~v-~s~~----~a~~l~~~Gvd~i~v~~ 400 (590)
..++..++.|++-+-+... .|+...+.+.++.+++...++|+ |+-.. .+.+ ..+.+.++|+|+|+.|
T Consensus 74 ~E~~~Av~~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L~~~ei~~a~~ia~eaGADfvKTs- 152 (211)
T TIGR00126 74 YETKEAIKYGADEVDMVINIGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGLLTDEEIRKACEICIDAGADFVKTS- 152 (211)
T ss_pred HHHHHHHHcCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEeC-
Confidence 3567788889998765443 35556677888888876544443 32111 2323 3455677999999432
Q ss_pred cccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEE
Q psy1056 401 FIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAM 457 (590)
Q Consensus 401 ~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~ 457 (590)
| ||.+.|.++..+..+++.... +++|-++|||||..++..-+.+||+-+.
T Consensus 153 -T-----Gf~~~gat~~dv~~m~~~v~~-~v~IKaaGGirt~~~a~~~i~aGa~riG 202 (211)
T TIGR00126 153 -T-----GFGAGGATVEDVRLMRNTVGD-TIGVKASGGVRTAEDAIAMIEAGASRIG 202 (211)
T ss_pred -C-----CCCCCCCCHHHHHHHHHHhcc-CCeEEEeCCCCCHHHHHHHHHHhhHHhC
Confidence 1 122223366666666666543 6999999999999999999999998773
|
Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria. |
| >TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.007 Score=58.54 Aligned_cols=39 Identities=26% Similarity=0.484 Sum_probs=32.0
Q ss_pred HHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEEC
Q psy1056 418 AVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMG 459 (590)
Q Consensus 418 ~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g 459 (590)
.+..+++. .++|++..||||++.++.+++..|||.|.+|
T Consensus 167 ~i~~Vk~~---~~~Pv~vGGGIrs~e~a~~l~~~GAD~VVVG 205 (205)
T TIGR01769 167 TISLVKKA---SGIPLIVGGGIRSPEIAYEIVLAGADAIVTG 205 (205)
T ss_pred HHHHHHHh---hCCCEEEeCCCCCHHHHHHHHHcCCCEEEeC
Confidence 34444443 3689999999999999999889999999887
|
This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum. |
| >PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.005 Score=62.18 Aligned_cols=118 Identities=15% Similarity=0.140 Sum_probs=90.0
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEecccc-CcHHHHHHHHCCCCEEEEcccccccCC
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVL-FGYQPRATLLNFIYQIEMIKFIKKEYP 407 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~-s~~~a~~l~~~Gvd~i~v~~~~~~~~~ 407 (590)
.+..+.+....+.|++.+.+.+...+..+-++.+..+++.. ++||+.++.. ++.++..+.++|||+|-+-... .
T Consensus 70 ~~~~~~A~~~~~~GA~aisvlte~~~f~g~~~~l~~v~~~v-~iPvl~kdfi~~~~qi~~a~~~GAD~VlLi~~~-l--- 144 (260)
T PRK00278 70 FDPVEIAKAYEAGGAACLSVLTDERFFQGSLEYLRAARAAV-SLPVLRKDFIIDPYQIYEARAAGADAILLIVAA-L--- 144 (260)
T ss_pred CCHHHHHHHHHhCCCeEEEEecccccCCCCHHHHHHHHHhc-CCCEEeeeecCCHHHHHHHHHcCCCEEEEEecc-C---
Confidence 35567888889999999988776544445578888888876 7999988766 6778999999999999431111 1
Q ss_pred CccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECc
Q psy1056 408 DMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGS 460 (590)
Q Consensus 408 ~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~ 460 (590)
....+.++.+.+...++.+++ =++|..|+.+|..+||+.+++..
T Consensus 145 -------~~~~l~~li~~a~~lGl~~lv--evh~~~E~~~A~~~gadiIgin~ 188 (260)
T PRK00278 145 -------DDEQLKELLDYAHSLGLDVLV--EVHDEEELERALKLGAPLIGINN 188 (260)
T ss_pred -------CHHHHHHHHHHHHHcCCeEEE--EeCCHHHHHHHHHcCCCEEEECC
Confidence 223456666677777888888 68899999999999999998763
|
|
| >cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0046 Score=60.65 Aligned_cols=118 Identities=16% Similarity=0.149 Sum_probs=86.3
Q ss_pred chhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEecccc-CcHHHHHHHHCCCCEEEEcccccccC
Q psy1056 328 READKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVL-FGYQPRATLLNFIYQIEMIKFIKKEY 406 (590)
Q Consensus 328 ~~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~-s~~~a~~l~~~Gvd~i~v~~~~~~~~ 406 (590)
..+..+.++.+.+.|++.+++.+-++...+..+.++.+++.. ++|+++++.. +.+.++.+.++|+|++-+. ...
T Consensus 30 ~~~~~~~A~~~~~~GA~~l~v~~~~~~~~g~~~~~~~i~~~v-~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~---~~~- 104 (217)
T cd00331 30 DFDPVEIAKAYEKAGAAAISVLTEPKYFQGSLEDLRAVREAV-SLPVLRKDFIIDPYQIYEARAAGADAVLLI---VAA- 104 (217)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEeCccccCCCHHHHHHHHHhc-CCCEEECCeecCHHHHHHHHHcCCCEEEEe---ecc-
Confidence 346678899999999999999877666656667888888875 7999987755 5668999999999999431 111
Q ss_pred CCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEEC
Q psy1056 407 PDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMG 459 (590)
Q Consensus 407 ~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g 459 (590)
.....+.++.+.+...++..++ .+.+..++.++..+|++.+.++
T Consensus 105 -------~~~~~~~~~~~~~~~~g~~~~v--~v~~~~e~~~~~~~g~~~i~~t 148 (217)
T cd00331 105 -------LDDEQLKELYELARELGMEVLV--EVHDEEELERALALGAKIIGIN 148 (217)
T ss_pred -------CCHHHHHHHHHHHHHcCCeEEE--EECCHHHHHHHHHcCCCEEEEe
Confidence 0112333444444455676666 5679999999999999999766
|
IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis. |
| >smart00116 CBS Domain in cystathionine beta-synthase and other proteins | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00056 Score=48.52 Aligned_cols=43 Identities=42% Similarity=0.760 Sum_probs=39.3
Q ss_pred CCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 28 DPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 28 ~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
+++++.+++++.++++.|.+++++.+||++++ ++++|+++..|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~g~i~~~~ 43 (49)
T smart00116 1 DVVTVSPDTTLEEALELLREHGIRRLPVVDEE---GRLVGIVTRRD 43 (49)
T ss_pred CceEecCCCcHHHHHHHHHHhCCCcccEECCC---CeEEEEEEHHH
Confidence 45789999999999999999999999999986 79999999984
|
Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease. |
| >PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2 | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0036 Score=59.60 Aligned_cols=112 Identities=21% Similarity=0.135 Sum_probs=67.4
Q ss_pred HHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcc-cccccCCCcccccc
Q psy1056 336 KLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIK-FIKKEYPDMQVIGR 414 (590)
Q Consensus 336 ~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~-~~~~~~~~~~~~g~ 414 (590)
+...+.+++.+|+...+-. ....++.++.-.++--.+-+.++++.+.+.|+||+-++. ..+..+++....|
T Consensus 66 ~la~~~~~dGvHl~~~~~~-------~~~~r~~~~~~~~ig~S~h~~~e~~~a~~~g~dYv~~gpvf~T~sk~~~~~~g- 137 (180)
T PF02581_consen 66 DLALELGADGVHLGQSDLP-------PAEARKLLGPDKIIGASCHSLEEAREAEELGADYVFLGPVFPTSSKPGAPPLG- 137 (180)
T ss_dssp HHHHHCT-SEEEEBTTSSS-------HHHHHHHHTTTSEEEEEESSHHHHHHHHHCTTSEEEEETSS--SSSSS-TTCH-
T ss_pred HHHHhcCCCEEEecccccc-------hHHhhhhcccceEEEeecCcHHHHHHhhhcCCCEEEECCccCCCCCccccccC-
Confidence 3455678898887554321 122333232223444467799999999999999997733 2333322221122
Q ss_pred chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECc
Q psy1056 415 NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGS 460 (590)
Q Consensus 415 ~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~ 460 (590)
+..+.+++....+|++|-||| |+.++..+..+||+.|.+-+
T Consensus 138 ----~~~l~~~~~~~~~pv~AlGGI-~~~~i~~l~~~Ga~gvAvi~ 178 (180)
T PF02581_consen 138 ----LDGLREIARASPIPVYALGGI-TPENIPELREAGADGVAVIS 178 (180)
T ss_dssp ----HHHHHHHHHHTSSCEEEESS---TTTHHHHHHTT-SEEEESH
T ss_pred ----HHHHHHHHHhCCCCEEEEcCC-CHHHHHHHHHcCCCEEEEEe
Confidence 333444444556999999999 89999999999999996544
|
5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D .... |
| >COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0059 Score=59.10 Aligned_cols=44 Identities=23% Similarity=0.330 Sum_probs=36.1
Q ss_pred HHHHHHHHHcCCcEEEEecCCCch-hhHHHHHHHHHHhCCCceEEe
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGNS-IYQIEMIKFIKKEYPDMQVIG 376 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~~-~~~l~~i~~i~~~~~~vpvi~ 376 (590)
.+.++.+.++|-|++.|-.+.|.. +.+.+.++.+++.+ ++|++.
T Consensus 31 ~ei~~~~~~~GTDaImIGGS~gvt~~~~~~~v~~ik~~~-~lPvil 75 (240)
T COG1646 31 DEIAEAAAEAGTDAIMIGGSDGVTEENVDNVVEAIKERT-DLPVIL 75 (240)
T ss_pred HHHHHHHHHcCCCEEEECCcccccHHHHHHHHHHHHhhc-CCCEEE
Confidence 467888999999999998888766 55778899999776 788885
|
|
| >PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4 | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0024 Score=61.30 Aligned_cols=111 Identities=17% Similarity=0.187 Sum_probs=75.1
Q ss_pred HHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccc
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQV 411 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~ 411 (590)
.+.++..+++|+++++- + +.. .+.++..++. ++|++- ++.|+.++.++.++|++.+++-+.....
T Consensus 70 ~e~a~~a~~aGA~FivS--P-~~~---~~v~~~~~~~--~i~~iP-G~~TptEi~~A~~~G~~~vK~FPA~~~G------ 134 (196)
T PF01081_consen 70 AEQAEAAIAAGAQFIVS--P-GFD---PEVIEYAREY--GIPYIP-GVMTPTEIMQALEAGADIVKLFPAGALG------ 134 (196)
T ss_dssp HHHHHHHHHHT-SEEEE--S-S-----HHHHHHHHHH--TSEEEE-EESSHHHHHHHHHTT-SEEEETTTTTTT------
T ss_pred HHHHHHHHHcCCCEEEC--C-CCC---HHHHHHHHHc--CCcccC-CcCCHHHHHHHHHCCCCEEEEecchhcC------
Confidence 46788889999999862 2 222 4566666666 788876 7899999999999999999773222111
Q ss_pred cccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 412 IGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 412 ~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
| +.-+..++.-. .++++++.|||. ..++..=|++||.+|++|+.|.
T Consensus 135 -G--~~~ik~l~~p~--p~~~~~ptGGV~-~~N~~~~l~ag~~~vg~Gs~L~ 180 (196)
T PF01081_consen 135 -G--PSYIKALRGPF--PDLPFMPTGGVN-PDNLAEYLKAGAVAVGGGSWLF 180 (196)
T ss_dssp -H--HHHHHHHHTTT--TT-EEEEBSS---TTTHHHHHTSTTBSEEEESGGG
T ss_pred -c--HHHHHHHhccC--CCCeEEEcCCCC-HHHHHHHHhCCCEEEEECchhc
Confidence 0 11222333222 259999999995 5789999999999999999884
|
1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A .... |
| >PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0044 Score=63.15 Aligned_cols=92 Identities=13% Similarity=0.020 Sum_probs=68.4
Q ss_pred HHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHh--cCCCcEEe
Q psy1056 358 QIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYAS--RRGVPVIA 435 (590)
Q Consensus 358 ~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~--~~~v~iia 435 (590)
+.+.++.+++..|....|--++-+.+++.++.++|+|+|-+. .+ +++.+.++.+..+ ..++|+.|
T Consensus 182 i~~av~~~r~~~~~~~~I~VEv~tleea~eA~~~GaD~I~LD-----------n~--~~e~l~~av~~~~~~~~~i~leA 248 (288)
T PRK07428 182 IGEAITRIRQRIPYPLTIEVETETLEQVQEALEYGADIIMLD-----------NM--PVDLMQQAVQLIRQQNPRVKIEA 248 (288)
T ss_pred HHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHcCCCEEEEC-----------CC--CHHHHHHHHHHHHhcCCCeEEEE
Confidence 567888899888633334459999999999999999999221 11 2333444443332 23589999
Q ss_pred cCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 436 DGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 436 ~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
+||| |...+..-.+.|+|.+.+|+++.
T Consensus 249 sGGI-t~~ni~~ya~tGvD~Isvgsl~~ 275 (288)
T PRK07428 249 SGNI-TLETIRAVAETGVDYISSSAPIT 275 (288)
T ss_pred ECCC-CHHHHHHHHHcCCCEEEEchhhh
Confidence 9999 79999988899999999998774
|
|
| >COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0075 Score=58.56 Aligned_cols=116 Identities=19% Similarity=0.155 Sum_probs=74.9
Q ss_pred HHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEE-cccccccCCCcccccc
Q psy1056 336 KLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEM-IKFIKKEYPDMQVIGR 414 (590)
Q Consensus 336 ~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v-~~~~~~~~~~~~~~g~ 414 (590)
+...+.++|.+|+ .+.+. .+...++.+++..+|--.+-+.+++.++.+.|+|||-+ .+..|..+.+....
T Consensus 75 dlA~~~~AdGVHl--Gq~D~-----~~~~ar~~~~~~~iIG~S~h~~eea~~A~~~g~DYv~~GpifpT~tK~~~~~~-- 145 (211)
T COG0352 75 DLALAVGADGVHL--GQDDM-----PLAEARELLGPGLIIGLSTHDLEEALEAEELGADYVGLGPIFPTSTKPDAPPL-- 145 (211)
T ss_pred HHHHhCCCCEEEc--CCccc-----chHHHHHhcCCCCEEEeecCCHHHHHHHHhcCCCEEEECCcCCCCCCCCCCcc--
Confidence 3444678888876 33332 33445555544434444666999999999999999966 33333332221111
Q ss_pred chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccC
Q psy1056 415 NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAG 464 (590)
Q Consensus 415 ~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~ 464 (590)
....+..+.+. ..+|++|=||| ++..+...+..||++|-+-+.+..
T Consensus 146 G~~~l~~~~~~---~~iP~vAIGGi-~~~nv~~v~~~Ga~gVAvvsai~~ 191 (211)
T COG0352 146 GLEGLREIREL---VNIPVVAIGGI-NLENVPEVLEAGADGVAVVSAITS 191 (211)
T ss_pred CHHHHHHHHHh---CCCCEEEEcCC-CHHHHHHHHHhCCCeEEehhHhhc
Confidence 22223333332 34999999999 889999999999999988877753
|
|
| >PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0069 Score=59.32 Aligned_cols=112 Identities=13% Similarity=0.040 Sum_probs=79.3
Q ss_pred HHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccc
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQV 411 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~ 411 (590)
.+.++..+++|+++++ +.+.. .+.++..++. ++|++- ++.|+.++..+.++|++.+++-+... .
T Consensus 81 ~e~a~~a~~aGA~FiV---sP~~~---~~v~~~~~~~--~i~~iP-G~~TpsEi~~A~~~Ga~~vKlFPA~~-~------ 144 (222)
T PRK07114 81 AATAALYIQLGANFIV---TPLFN---PDIAKVCNRR--KVPYSP-GCGSLSEIGYAEELGCEIVKLFPGSV-Y------ 144 (222)
T ss_pred HHHHHHHHHcCCCEEE---CCCCC---HHHHHHHHHc--CCCEeC-CCCCHHHHHHHHHCCCCEEEECcccc-c------
Confidence 4667888999999986 33322 3556666655 677765 78999999999999999998733221 0
Q ss_pred cccchhHHHHHHHHHhcCCCcEEecCCCCC-HHHHHHHHHcCCCEEEECccccC
Q psy1056 412 IGRNGTAVYRVAEYASRRGVPVIADGGVQS-VGHVMKALALGASTAMMGSLLAG 464 (590)
Q Consensus 412 ~g~~~~~l~~~~~~~~~~~v~iia~GGi~~-~~di~kalalGA~~v~~g~~l~~ 464 (590)
| +.-+..+..-. .++++++.|||.- ..++..=|+.||.+|.+|+.|..
T Consensus 145 -G--~~~ikal~~p~--p~i~~~ptGGV~~~~~n~~~yl~aGa~avg~Gs~L~~ 193 (222)
T PRK07114 145 -G--PGFVKAIKGPM--PWTKIMPTGGVEPTEENLKKWFGAGVTCVGMGSKLIP 193 (222)
T ss_pred -C--HHHHHHHhccC--CCCeEEeCCCCCcchhcHHHHHhCCCEEEEEChhhcC
Confidence 1 11122232221 2589999999974 37898999999999999999853
|
|
| >PRK06512 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.01 Score=58.30 Aligned_cols=117 Identities=12% Similarity=0.036 Sum_probs=70.6
Q ss_pred HHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhC-CCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccccc
Q psy1056 335 LKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEY-PDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIG 413 (590)
Q Consensus 335 ~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~-~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g 413 (590)
.+...+.|++.+|+- +.+. .+...++.. ++..+.+..+.+.+++.++.+.|+||+-++...+..+. +.
T Consensus 80 ~dlA~~~~adGVHLg--~~d~-----~~~~~r~~~~~~~iiG~s~~~s~~~a~~A~~~gaDYv~~Gpv~t~tK~---~~- 148 (221)
T PRK06512 80 SRIAGRVKADGLHIE--GNLA-----ALAEAIEKHAPKMIVGFGNLRDRHGAMEIGELRPDYLFFGKLGADNKP---EA- 148 (221)
T ss_pred HHHHHHhCCCEEEEC--cccc-----CHHHHHHhcCCCCEEEecCCCCHHHHHHhhhcCCCEEEECCCCCCCCC---CC-
Confidence 344456678888763 2221 134455444 23322222245788888888999999976332221211 11
Q ss_pred cchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccC
Q psy1056 414 RNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAG 464 (590)
Q Consensus 414 ~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~ 464 (590)
.+..+..++.++...++|++|=||| +..++..++..||++|.+-+.+..
T Consensus 149 -~p~gl~~l~~~~~~~~iPvvAIGGI-~~~n~~~~~~~GA~giAvisai~~ 197 (221)
T PRK06512 149 -HPRNLSLAEWWAEMIEIPCIVQAGS-DLASAVEVAETGAEFVALERAVFD 197 (221)
T ss_pred -CCCChHHHHHHHHhCCCCEEEEeCC-CHHHHHHHHHhCCCEEEEhHHhhC
Confidence 1111222333344457999999999 999999999999999977776643
|
|
| >PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0069 Score=61.37 Aligned_cols=92 Identities=17% Similarity=0.040 Sum_probs=69.8
Q ss_pred hHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhc----CCCc
Q psy1056 357 YQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASR----RGVP 432 (590)
Q Consensus 357 ~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~----~~v~ 432 (590)
++.+.++.+++..|..++.+ +|-+.+++..++++|+|.|-+. . + ++..+.++.+.... .++.
T Consensus 168 ~i~~av~~~r~~~~~~kIeV-Ev~~leea~~a~~agaDiI~LD---n-----~-----~~e~l~~~v~~l~~~~~~~~~~ 233 (278)
T PRK08385 168 PLEEAIRRAKEFSVYKVVEV-EVESLEDALKAAKAGADIIMLD---N-----M-----TPEEIREVIEALKREGLRERVK 233 (278)
T ss_pred HHHHHHHHHHHhCCCCcEEE-EeCCHHHHHHHHHcCcCEEEEC---C-----C-----CHHHHHHHHHHHHhcCcCCCEE
Confidence 45678888888877777655 9999999999999999988221 1 1 33444555544322 2478
Q ss_pred EEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 433 VIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 433 iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
+.+|||| |...+.+-...|+|.+.+|.+..
T Consensus 234 leaSGGI-~~~ni~~yA~tGvD~Is~galt~ 263 (278)
T PRK08385 234 IEVSGGI-TPENIEEYAKLDVDVISLGALTH 263 (278)
T ss_pred EEEECCC-CHHHHHHHHHcCCCEEEeChhhc
Confidence 9999999 99999988889999999998773
|
|
| >cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0026 Score=63.54 Aligned_cols=76 Identities=13% Similarity=0.082 Sum_probs=51.9
Q ss_pred cHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcc
Q psy1056 382 GYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSL 461 (590)
Q Consensus 382 ~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~ 461 (590)
.+-++.+.++|++.+.+..... . -.+-+.....+ .+..+..++|++++|||++..|+.+.+..||++|++|+.
T Consensus 30 ~~~a~~~~~~G~~~i~i~d~~~-~---~~~~~~~~~~i---~~i~~~~~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~~ 102 (243)
T cd04731 30 VELAKRYNEQGADELVFLDITA-S---SEGRETMLDVV---ERVAEEVFIPLTVGGGIRSLEDARRLLRAGADKVSINSA 102 (243)
T ss_pred HHHHHHHHHCCCCEEEEEcCCc-c---cccCcccHHHH---HHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCceEEECch
Confidence 4677888899999774411110 1 00111122333 333334569999999999999999999999999999987
Q ss_pred ccC
Q psy1056 462 LAG 464 (590)
Q Consensus 462 l~~ 464 (590)
+..
T Consensus 103 ~~~ 105 (243)
T cd04731 103 AVE 105 (243)
T ss_pred hhh
Confidence 753
|
Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. |
| >cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0061 Score=61.70 Aligned_cols=89 Identities=16% Similarity=0.079 Sum_probs=66.0
Q ss_pred HHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCC
Q psy1056 359 IEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGG 438 (590)
Q Consensus 359 l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GG 438 (590)
...++.+|+..|.-..|.-++-+.++++++.++|+|+|-+. .- .++.+.++.+.... ++|+.|+||
T Consensus 169 ~~~v~~~r~~~~~~~~Igvev~s~eea~~A~~~gaDyI~ld----~~---------~~e~l~~~~~~~~~-~ipi~AiGG 234 (268)
T cd01572 169 TEAVRRARAAAPFTLKIEVEVETLEQLKEALEAGADIIMLD----NM---------SPEELREAVALLKG-RVLLEASGG 234 (268)
T ss_pred HHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHcCCCEEEEC----Cc---------CHHHHHHHHHHcCC-CCcEEEECC
Confidence 45678888887633334458889999999999999999221 11 33334444443322 589999999
Q ss_pred CCCHHHHHHHHHcCCCEEEECccc
Q psy1056 439 VQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 439 i~~~~di~kalalGA~~v~~g~~l 462 (590)
| |...+..-.+.|+|.+.+|++.
T Consensus 235 I-~~~ni~~~a~~Gvd~Iav~sl~ 257 (268)
T cd01572 235 I-TLENIRAYAETGVDYISVGALT 257 (268)
T ss_pred C-CHHHHHHHHHcCCCEEEEEeee
Confidence 9 7899999999999999999876
|
It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other. |
| >cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE) | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.016 Score=56.27 Aligned_cols=122 Identities=16% Similarity=0.113 Sum_probs=71.2
Q ss_pred HHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEec-cccCc-HHHHHHHHCCCCEEEE-cccccccCCC
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGG-NVLFG-YQPRATLLNFIYQIEM-IKFIKKEYPD 408 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g-~v~s~-~~a~~l~~~Gvd~i~v-~~~~~~~~~~ 408 (590)
.+.++.+.+.|++.+.++..+. ....+.++.+++. +..++.- +..+. +.++.. ..++|++-+ +...+
T Consensus 70 ~~~~~~~~~~g~dgv~vh~~~~--~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~-~~~~d~i~~~~~~~g----- 139 (211)
T cd00429 70 ERYIEAFAKAGADIITFHAEAT--DHLHRTIQLIKEL--GMKAGVALNPGTPVEVLEPY-LDEVDLVLVMSVNPG----- 139 (211)
T ss_pred HHHHHHHHHcCCCEEEECccch--hhHHHHHHHHHHC--CCeEEEEecCCCCHHHHHHH-HhhCCEEEEEEECCC-----
Confidence 3457777799999998866543 2234455555554 4433321 12233 344444 445898854 22111
Q ss_pred ccc--ccc-chhHHHHHHHHHh--cCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccC
Q psy1056 409 MQV--IGR-NGTAVYRVAEYAS--RRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAG 464 (590)
Q Consensus 409 ~~~--~g~-~~~~l~~~~~~~~--~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~ 464 (590)
.++ +.+ ....+.++++... ..++|++++|||.. .++.+++..|||.+.+|+.+..
T Consensus 140 ~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GGI~~-env~~~~~~gad~iivgsai~~ 199 (211)
T cd00429 140 FGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGGINL-ETIPLLAEAGADVLVAGSALFG 199 (211)
T ss_pred CCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCH-HHHHHHHHcCCCEEEECHHHhC
Confidence 112 111 1222333333322 11389999999975 9999999999999999999854
|
This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis. |
| >PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0078 Score=61.02 Aligned_cols=88 Identities=11% Similarity=0.073 Sum_probs=65.0
Q ss_pred HHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCC
Q psy1056 359 IEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGG 438 (590)
Q Consensus 359 l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GG 438 (590)
...++.+++..|+.++.+ ++-|.++++++.++|+|+|-+ ..+ ++..+.++.+... .++|+.|+||
T Consensus 177 ~~av~~~r~~~~~~~I~V-Ev~tleea~eA~~~gaD~I~L-----------D~~--~~e~l~~~v~~~~-~~i~leAsGG 241 (277)
T PRK05742 177 AQAVAAAHRIAPGKPVEV-EVESLDELRQALAAGADIVML-----------DEL--SLDDMREAVRLTA-GRAKLEASGG 241 (277)
T ss_pred HHHHHHHHHhCCCCeEEE-EeCCHHHHHHHHHcCCCEEEE-----------CCC--CHHHHHHHHHHhC-CCCcEEEECC
Confidence 445677777766666544 888999999999999999922 111 3333444444332 2689999999
Q ss_pred CCCHHHHHHHHHcCCCEEEECccc
Q psy1056 439 VQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 439 i~~~~di~kalalGA~~v~~g~~l 462 (590)
| |...+..-.+.|+|.+.+|.+.
T Consensus 242 I-t~~ni~~~a~tGvD~Isvg~lt 264 (277)
T PRK05742 242 I-NESTLRVIAETGVDYISIGAMT 264 (277)
T ss_pred C-CHHHHHHHHHcCCCEEEEChhh
Confidence 9 7999999999999999999876
|
|
| >TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0088 Score=60.40 Aligned_cols=116 Identities=15% Similarity=0.155 Sum_probs=71.5
Q ss_pred HHHHHHHHcCCcEEEEecCCCch--hhHHHHHHHHH---HhCCCceEEecc------c--cC---cHH-HHHHHHCCCCE
Q psy1056 333 NRLKLLSQAGVDVVILDSSQGNS--IYQIEMIKFIK---KEYPDMQVIGGN------V--LF---GYQ-PRATLLNFIYQ 395 (590)
Q Consensus 333 e~~~~li~~gad~i~V~~~~G~~--~~~l~~i~~i~---~~~~~vpvi~g~------v--~s---~~~-a~~l~~~Gvd~ 395 (590)
..++.+++.|++.+.+....|.. ...++.++.++ ..+ ++|+++.- + .+ ... ++.+.++|+|+
T Consensus 94 ~~v~~al~~Ga~~v~~~~~~g~~~~~~~~~~~~~i~~~~~~~-g~~liv~~~~~Gvh~~~~~~~~~~~~~~~a~~~GADy 172 (258)
T TIGR01949 94 TTVEDAIRMGADAVSIHVNVGSDTEWEQIRDLGMIAEICDDW-GVPLLAMMYPRGPHIDDRDPELVAHAARLGAELGADI 172 (258)
T ss_pred eeHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHc-CCCEEEEEeccCcccccccHHHHHHHHHHHHHHCCCE
Confidence 35677889999988776544322 22334555444 345 67776521 1 12 222 46667899999
Q ss_pred EEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCC--C----HHHHHHHHHcCCCEEEECccccC
Q psy1056 396 IEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQ--S----VGHVMKALALGASTAMMGSLLAG 464 (590)
Q Consensus 396 i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~--~----~~di~kalalGA~~v~~g~~l~~ 464 (590)
|.++ +. .... .+++.+....+||++.|||+ + ...+..++..||+.+.+|+.+..
T Consensus 173 ikt~---------~~---~~~~---~l~~~~~~~~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~ 232 (258)
T TIGR01949 173 VKTP---------YT---GDID---SFRDVVKGCPAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQ 232 (258)
T ss_pred Eecc---------CC---CCHH---HHHHHHHhCCCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhc
Confidence 9432 10 0222 23444434469999999999 5 34455666999999999988853
|
Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally. |
| >TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0035 Score=63.12 Aligned_cols=75 Identities=16% Similarity=0.109 Sum_probs=51.8
Q ss_pred HHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 383 YQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 383 ~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
+.|+.+.+.|++.+-+.-.. +. ..+-+.....+..+ ++..++|++++|||++..|+.+++.+||+.|++|+.+
T Consensus 34 ~~a~~~~~~G~~~l~v~Dl~-~~---~~~~~~n~~~i~~i---~~~~~~pv~~~GGi~s~~d~~~~~~~Ga~~vivgt~~ 106 (254)
T TIGR00735 34 ELAQRYDEEGADELVFLDIT-AS---SEGRTTMIDVVERT---AETVFIPLTVGGGIKSIEDVDKLLRAGADKVSINTAA 106 (254)
T ss_pred HHHHHHHHcCCCEEEEEcCC-cc---cccChhhHHHHHHH---HHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEChhH
Confidence 67788888999998551111 01 01111133333333 3345699999999999999999999999999999877
Q ss_pred cC
Q psy1056 463 AG 464 (590)
Q Consensus 463 ~~ 464 (590)
..
T Consensus 107 ~~ 108 (254)
T TIGR00735 107 VK 108 (254)
T ss_pred hh
Confidence 54
|
|
| >TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0022 Score=66.14 Aligned_cols=137 Identities=28% Similarity=0.334 Sum_probs=118.6
Q ss_pred EEeccccccccCCCCCCC--CccCCcccccccccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCc---------
Q psy1056 68 IVTSRDVDFLENSANMDL--KIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTRE--------- 136 (590)
Q Consensus 68 ivT~~Did~l~~~~~~~~--~~~~~~~~~l~~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~--------- 136 (590)
++|++ |+++.|+.+.. .+++++++.+. ...+..|++.++|++.....|+..++..|+++++|+..+
T Consensus 1 ~~~Fd--dV~lvp~~lp~~s~~dVdlst~~~-~~~l~~P~~inAM~t~in~~LA~~a~~~G~~~i~hK~~~E~~~sfvrk 77 (321)
T TIGR01306 1 VFDYE--DIQLIPNKCIVNSRSECDTSVTLG-KHKFKLPVVPANMQTIIDEKLAEQLAENGYFYIMHRFDEESRIPFIKD 77 (321)
T ss_pred CCCcc--cEEEecCCCCCCCHHHceeeEEEC-CcEecCcEEeeccchhhhHHHHHHHHHcCCEEEEecCCHHHHHHHHHh
Confidence 36888 66667876655 47899999888 567899999999999999999999999999999999211
Q ss_pred ----------------chHHHHHHHHHcC--CcEEEEcCCCCchHHHHHHHHHhhhcCCCcccccccccchHHHHHHHHH
Q psy1056 137 ----------------ADKYRLKLLSQAG--VDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDA 198 (590)
Q Consensus 137 ----------------d~~~~~~~l~~~~--~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~im~~~~~~~~~~~~a~~~ 198 (590)
++.+++..|++++ +|+|++|++|||...+.+.++++++.+|...++.+++.+.+..+.+.+.
T Consensus 78 ~k~~~L~v~~SvG~t~e~~~r~~~lv~a~~~~d~i~~D~ahg~s~~~~~~i~~i~~~~p~~~vi~GnV~t~e~a~~l~~a 157 (321)
T TIGR01306 78 MQERGLFASISVGVKACEYEFVTQLAEEALTPEYITIDIAHGHSNSVINMIKHIKTHLPDSFVIAGNVGTPEAVRELENA 157 (321)
T ss_pred ccccccEEEEEcCCCHHHHHHHHHHHhcCCCCCEEEEeCccCchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHc
Confidence 3679999999988 7999999999999999999999999888877899999888888899999
Q ss_pred hcccccccc
Q psy1056 199 GVDGLRVGS 207 (590)
Q Consensus 199 m~~~~~v~~ 207 (590)
.+|+++|++
T Consensus 158 Gad~I~V~~ 166 (321)
T TIGR01306 158 GADATKVGI 166 (321)
T ss_pred CcCEEEECC
Confidence 988888774
|
A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages. |
| >PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0037 Score=62.21 Aligned_cols=122 Identities=20% Similarity=0.186 Sum_probs=78.6
Q ss_pred HHHHHHHHHcCCcEEEEec-----CCCchhhHHHHHHHHHH---hCCCceEEeccccCc-------------HHHHHHHH
Q psy1056 332 KNRLKLLSQAGVDVVILDS-----SQGNSIYQIEMIKFIKK---EYPDMQVIGGNVLFG-------------YQPRATLL 390 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~-----~~G~~~~~l~~i~~i~~---~~~~vpvi~g~v~s~-------------~~a~~l~~ 390 (590)
...++..++.|++.+-+.. ..++.....+.++.+++ .+ .+|+|+-...+. ..++.+.+
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~~~i~~v~~~~~~~-gl~vIlE~~l~~~~~~~~~~~~~I~~a~ria~e 157 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGSGNEDEVIEEIAAVVEECHKY-GLKVILEPYLRGEEVADEKKPDLIARAARIAAE 157 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHTTHHHHHHHHHHHHHHHHHTS-EEEEEEEECECHHHBSSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCceeeeeccccccccccHHHHHHHHHHHHHHHhcC-CcEEEEEEecCchhhcccccHHHHHHHHHHHHH
Confidence 4567778889999876543 23444445555555554 34 678886433332 33567788
Q ss_pred CCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCc----EEecCCC------CCHHHHHHHHHcCC--CEEEE
Q psy1056 391 NFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVP----VIADGGV------QSVGHVMKALALGA--STAMM 458 (590)
Q Consensus 391 ~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~----iia~GGi------~~~~di~kalalGA--~~v~~ 458 (590)
+|+|+|+.+.... .|.+...+..+++......+| |.++||+ ++..++.+.+.+|| .++..
T Consensus 158 ~GaD~vKt~tg~~--------~~~t~~~~~~~~~~~~~~~~p~~~~Vk~sGGi~~~~~~~~l~~a~~~i~aGa~~~G~~~ 229 (236)
T PF01791_consen 158 LGADFVKTSTGKP--------VGATPEDVELMRKAVEAAPVPGKVGVKASGGIDAEDFLRTLEDALEFIEAGADRIGTSS 229 (236)
T ss_dssp TT-SEEEEE-SSS--------SCSHHHHHHHHHHHHHTHSSTTTSEEEEESSSSHHHHHHSHHHHHHHHHTTHSEEEEEE
T ss_pred hCCCEEEecCCcc--------ccccHHHHHHHHHHHHhcCCCcceEEEEeCCCChHHHHHHHHHHHHHHHcCChhHHHHH
Confidence 9999997643211 122555666667766655688 9999999 99999999999999 66666
Q ss_pred Cccc
Q psy1056 459 GSLL 462 (590)
Q Consensus 459 g~~l 462 (590)
|+-+
T Consensus 230 Gr~i 233 (236)
T PF01791_consen 230 GRNI 233 (236)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
|
|
| >PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.025 Score=55.17 Aligned_cols=169 Identities=15% Similarity=0.107 Sum_probs=99.8
Q ss_pred CeeEEcCCCCHHHHHHHH---HhcCCCcceEEcCCCceEEEEeecccccccCCCCCCcccCCceEEeEeeccchhHHHHH
Q psy1056 259 EIISAQAGISLEEANVIL---EKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREADKNRL 335 (590)
Q Consensus 259 ~~~tv~~~~~l~ea~~~m---~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~ 335 (590)
+++.+-...+.+++.++. .+.+++.+=|. +-+. +-++.... .++..++..+++..-.. .+.+
T Consensus 16 ~~iaV~r~~~~~~a~~i~~al~~~Gi~~iEit--------l~~~-~~~~~I~~---l~~~~p~~~IGAGTVl~---~~~a 80 (212)
T PRK05718 16 PVVPVIVINKLEDAVPLAKALVAGGLPVLEVT--------LRTP-AALEAIRL---IAKEVPEALIGAGTVLN---PEQL 80 (212)
T ss_pred CEEEEEEcCCHHHHHHHHHHHHHcCCCEEEEe--------cCCc-cHHHHHHH---HHHHCCCCEEEEeeccC---HHHH
Confidence 666666666777666555 55566654333 1111 11111110 11222344555433222 2678
Q ss_pred HHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccccccc
Q psy1056 336 KLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRN 415 (590)
Q Consensus 336 ~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~ 415 (590)
+...++|+++++. .+.. .+.++..++. ++|++- ++.|+.++.++.++|++.+++-.... + + |
T Consensus 81 ~~a~~aGA~Fivs---P~~~---~~vi~~a~~~--~i~~iP-G~~TptEi~~a~~~Ga~~vKlFPa~~-----~-g-g-- 142 (212)
T PRK05718 81 AQAIEAGAQFIVS---PGLT---PPLLKAAQEG--PIPLIP-GVSTPSELMLGMELGLRTFKFFPAEA-----S-G-G-- 142 (212)
T ss_pred HHHHHcCCCEEEC---CCCC---HHHHHHHHHc--CCCEeC-CCCCHHHHHHHHHCCCCEEEEccchh-----c-c-C--
Confidence 8899999999863 2222 2455555554 677765 67899899999999999997722111 0 0 1
Q ss_pred hhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 416 GTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 416 ~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
+.-+..+..-. .++|+++.||| +..++..=+..|+..++.|+.|.
T Consensus 143 ~~~lk~l~~p~--p~~~~~ptGGV-~~~ni~~~l~ag~v~~vggs~L~ 187 (212)
T PRK05718 143 VKMLKALAGPF--PDVRFCPTGGI-SPANYRDYLALPNVLCIGGSWMV 187 (212)
T ss_pred HHHHHHHhccC--CCCeEEEeCCC-CHHHHHHHHhCCCEEEEEChHhC
Confidence 11222333222 25999999999 66889999999976777788774
|
|
| >cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0068 Score=61.51 Aligned_cols=88 Identities=15% Similarity=0.119 Sum_probs=64.9
Q ss_pred HHHHHHHHhCC-CceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhc-CCCcEEecC
Q psy1056 360 EMIKFIKKEYP-DMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASR-RGVPVIADG 437 (590)
Q Consensus 360 ~~i~~i~~~~~-~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~-~~v~iia~G 437 (590)
..++.+|+..| +.++ .-++.|.+++.++.++|+|+|-+.. - .++.+.++.+..+. .++|+.++|
T Consensus 169 ~~v~~~r~~~~~~~~I-~vev~t~eea~~A~~~gaD~I~ld~----~---------~~e~l~~~v~~i~~~~~i~i~asG 234 (269)
T cd01568 169 EAVKRARAAAPFEKKI-EVEVETLEEAEEALEAGADIIMLDN----M---------SPEELKEAVKLLKGLPRVLLEASG 234 (269)
T ss_pred HHHHHHHHhCCCCCeE-EEecCCHHHHHHHHHcCCCEEEECC----C---------CHHHHHHHHHHhccCCCeEEEEEC
Confidence 56788888886 4444 4488999999999999999993311 1 22334444333322 258999999
Q ss_pred CCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 438 GVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 438 Gi~~~~di~kalalGA~~v~~g~~l 462 (590)
|| |...+..-.+.|||++.+|.++
T Consensus 235 GI-t~~ni~~~a~~Gad~Isvgal~ 258 (269)
T cd01568 235 GI-TLENIRAYAETGVDVISTGALT 258 (269)
T ss_pred CC-CHHHHHHHHHcCCCEEEEcHHH
Confidence 99 7899999999999999988766
|
It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other. |
| >COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0056 Score=58.79 Aligned_cols=39 Identities=13% Similarity=0.003 Sum_probs=33.1
Q ss_pred HHHHHHHHHhCCCceEEec-cccCcHHHHHHHHCCCCEEEE
Q psy1056 359 IEMIKFIKKEYPDMQVIGG-NVLFGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 359 l~~i~~i~~~~~~vpvi~g-~v~s~~~a~~l~~~Gvd~i~v 398 (590)
.+.|+.+-... .+||++| -++...+|+-|...|+|+||=
T Consensus 66 p~~i~eim~aV-sIPVMAKvRIGH~~EA~iLealgVD~IDE 105 (296)
T COG0214 66 PKMIEEIMDAV-SIPVMAKVRIGHFVEAQILEALGVDMIDE 105 (296)
T ss_pred HHHHHHHHHhc-ccceeeeeecchhHHHHHHHHhCCCcccc
Confidence 46788888877 7999986 577899999999999999983
|
|
| >KOG0475|consensus | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0023 Score=69.69 Aligned_cols=105 Identities=17% Similarity=0.278 Sum_probs=84.9
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhh--cc--cc---------------------c
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVD--FL--EN---------------------S 243 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~--~~--~~---------------------~ 243 (590)
..++++....| .++.++++||+-+. ....++|++..+|+. +. .. .
T Consensus 565 s~tl~~le~~~---------~~t~~sgfpvvl~~-~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~f~~~~~~~~~~ 634 (696)
T KOG0475|consen 565 SMTLEDLESLM---------EDTDFSGFPVVLSE-DSQRLVGFVLRRNLFLAILNARKIQSFIVTTSIYFNDPSPSAVAG 634 (696)
T ss_pred ceeHHHHHHHH---------hhcccCCceEEEcc-ccceeEEEEchHHHHHHHhhhccccccceecccccCCCCccccCC
Confidence 57899999999 99999999998541 146899999999996 11 00 0
Q ss_pred cccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccccc
Q psy1056 244 ANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSR 306 (590)
Q Consensus 244 ~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~ 306 (590)
.......+++|.. .++++...++++.+++++++-+++.+.|. ++|++.|+||++|+++..
T Consensus 635 ~~~~~~lk~il~~--tp~tv~d~tp~~~v~~~F~~lg~~~~~v~-~~G~l~Giitkkd~l~~~ 694 (696)
T KOG0475|consen 635 IPSRLDLKDILDM--TPFTVTDLTPMETVVDLFRKLGLRQILVT-KNGILLGIITKKDCLRHT 694 (696)
T ss_pred CCCCcCceeeccC--CcccccccCcHHHHHHHHHhhCceEEEEc-cCCeeEeeeehHHHHHhh
Confidence 0123557899988 99999999999999999999999888765 589999999999998764
|
|
| >TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0083 Score=60.63 Aligned_cols=90 Identities=13% Similarity=0.041 Sum_probs=66.1
Q ss_pred HHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecC
Q psy1056 358 QIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADG 437 (590)
Q Consensus 358 ~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~G 437 (590)
+...++.+|+.+++...|.-++-|.++++++.++|+|+|-+. .- .++.+.++.+.... .+|+.|+|
T Consensus 164 ~~~av~~~r~~~~~~~~Igvev~t~eea~~A~~~gaDyI~ld----~~---------~~e~lk~~v~~~~~-~ipi~AsG 229 (265)
T TIGR00078 164 IEKAVKRARAAAPFALKIEVEVESLEEAEEAAEAGADIIMLD----NM---------KPEEIKEAVQLLKG-RVLLEASG 229 (265)
T ss_pred HHHHHHHHHHhCCCCCeEEEEeCCHHHHHHHHHcCCCEEEEC----CC---------CHHHHHHHHHHhcC-CCcEEEEC
Confidence 456788888888633344458899999999999999999221 11 33344444443322 38999999
Q ss_pred CCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 438 GVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 438 Gi~~~~di~kalalGA~~v~~g~~l 462 (590)
|| |...+..-.+.|||.+.+|.+.
T Consensus 230 GI-~~~ni~~~a~~Gvd~Isvgait 253 (265)
T TIGR00078 230 GI-TLDNLEEYAETGVDVISSGALT 253 (265)
T ss_pred CC-CHHHHHHHHHcCCCEEEeCHHH
Confidence 99 7899999999999999887665
|
Synonym: quinolinate phosphoribosyltransferase (decarboxylating) |
| >PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.015 Score=55.98 Aligned_cols=111 Identities=15% Similarity=0.186 Sum_probs=78.2
Q ss_pred HHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccc
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQV 411 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~ 411 (590)
.+.++..+++|+++++ +.+.. .+.++..++. ++|.+- ++.|+.++..+.++|++.+++-+.....
T Consensus 66 ~e~a~~ai~aGA~Fiv---SP~~~---~~vi~~a~~~--~i~~iP-G~~TptEi~~A~~~Ga~~vK~FPa~~~G------ 130 (201)
T PRK06015 66 AKQFEDAAKAGSRFIV---SPGTT---QELLAAANDS--DVPLLP-GAATPSEVMALREEGYTVLKFFPAEQAG------ 130 (201)
T ss_pred HHHHHHHHHcCCCEEE---CCCCC---HHHHHHHHHc--CCCEeC-CCCCHHHHHHHHHCCCCEEEECCchhhC------
Confidence 4677889999999986 22222 3556665555 677765 7899999999999999999873321110
Q ss_pred cccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 412 IGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 412 ~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
| +.-+..++.-. .++|+++.||| +...+..=|++|+.+++.|+.+.
T Consensus 131 -G--~~yikal~~pl--p~~~l~ptGGV-~~~n~~~~l~ag~~~~~ggs~l~ 176 (201)
T PRK06015 131 -G--AAFLKALSSPL--AGTFFCPTGGI-SLKNARDYLSLPNVVCVGGSWVA 176 (201)
T ss_pred -C--HHHHHHHHhhC--CCCcEEecCCC-CHHHHHHHHhCCCeEEEEchhhC
Confidence 1 11122333222 25999999999 56789999999999888899884
|
|
| >PRK08091 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.038 Score=54.33 Aligned_cols=122 Identities=16% Similarity=0.025 Sum_probs=79.3
Q ss_pred HHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCC--CceEEeccccCcHHHHHHHHCCCCEEEE-cccccccCCC
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYP--DMQVIGGNVLFGYQPRATLLNFIYQIEM-IKFIKKEYPD 408 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~--~vpvi~g~v~s~~~a~~l~~~Gvd~i~v-~~~~~~~~~~ 408 (590)
.+.++.+.++|++.+.++.-.- ......++++++.-- ..-+...--...+..+.+++. +|.|-+ ++..+
T Consensus 81 ~~~i~~~~~aGad~It~H~Ea~--~~~~~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~l~~-vD~VLiMtV~PG----- 152 (228)
T PRK08091 81 FEVAKACVAAGADIVTLQVEQT--HDLALTIEWLAKQKTTVLIGLCLCPETPISLLEPYLDQ-IDLIQILTLDPR----- 152 (228)
T ss_pred HHHHHHHHHhCCCEEEEcccCc--ccHHHHHHHHHHCCCCceEEEEECCCCCHHHHHHHHhh-cCEEEEEEECCC-----
Confidence 4577889999999999876421 234567788888731 122223233355666666654 787754 54433
Q ss_pred ccccccchhH---HHHHHHHHhcCC--CcEEecCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 409 MQVIGRNGTA---VYRVAEYASRRG--VPVIADGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 409 ~~~~g~~~~~---l~~~~~~~~~~~--v~iia~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
|.|......+ +.++++...+.+ ..|-.||||+ ...+.++.+.|||.+++|+.+
T Consensus 153 fgGQ~f~~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~ti~~l~~aGaD~~V~GSal 210 (228)
T PRK08091 153 TGTKAPSDLILDRVIQVENRLGNRRVEKLISIDGSMT-LELASYLKQHQIDWVVSGSAL 210 (228)
T ss_pred CCCccccHHHHHHHHHHHHHHHhcCCCceEEEECCCC-HHHHHHHHHCCCCEEEEChhh
Confidence 5555543333 445555544433 5588899994 678889999999999999877
|
|
| >TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.027 Score=54.69 Aligned_cols=121 Identities=16% Similarity=0.141 Sum_probs=78.4
Q ss_pred chhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEecc-ccCcH--HHHHHHHCCCCEEEEcccccc
Q psy1056 328 READKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGN-VLFGY--QPRATLLNFIYQIEMIKFIKK 404 (590)
Q Consensus 328 ~~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~-v~s~~--~a~~l~~~Gvd~i~v~~~~~~ 404 (590)
.++..+.++.+ +.|++++.+.++- ...+-.+.++.+++.+|+..++++- +.++. +++++.++|+|+|.+..+..
T Consensus 11 ~~~a~~~~~~l-~~~v~~iev~~~l-~~~~g~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~Gad~i~vh~~~~- 87 (206)
T TIGR03128 11 IEEALELAEKV-ADYVDIIEIGTPL-IKNEGIEAVKEMKEAFPDRKVLADLKTMDAGEYEAEQAFAAGADIVTVLGVAD- 87 (206)
T ss_pred HHHHHHHHHHc-ccCeeEEEeCCHH-HHHhCHHHHHHHHHHCCCCEEEEEEeeccchHHHHHHHHHcCCCEEEEeccCC-
Confidence 34556667777 7789998884322 1122267899999988776776542 33443 78999999999994422211
Q ss_pred cCCCccccccchhHHHHHHHHHhcCCCcEEec-CCCCCH-HHHHHHHHcCCCEEEECccc
Q psy1056 405 EYPDMQVIGRNGTAVYRVAEYASRRGVPVIAD-GGVQSV-GHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 405 ~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~-GGi~~~-~di~kalalGA~~v~~g~~l 462 (590)
...+.++.+.+++.+++++++ -+..++ .++..+..+|+|.|.+.+.+
T Consensus 88 -----------~~~~~~~i~~~~~~g~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~pg~ 136 (206)
T TIGR03128 88 -----------DATIKGAVKAAKKHGKEVQVDLINVKDKVKRAKELKELGADYIGVHTGL 136 (206)
T ss_pred -----------HHHHHHHHHHHHHcCCEEEEEecCCCChHHHHHHHHHcCCCEEEEcCCc
Confidence 112345555666678998874 244454 66777888899999775544
|
at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase. |
| >KOG1436|consensus | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0082 Score=60.28 Aligned_cols=109 Identities=17% Similarity=0.142 Sum_probs=73.9
Q ss_pred HHHHCCCCEEEEccccccc-CC--------Ccccc---ccchhHHHHHHHHHh--cCCCcEEecCCCCCHHHHHHHHHcC
Q psy1056 387 ATLLNFIYQIEMIKFIKKE-YP--------DMQVI---GRNGTAVYRVAEYAS--RRGVPVIADGGVQSVGHVMKALALG 452 (590)
Q Consensus 387 ~l~~~Gvd~i~v~~~~~~~-~~--------~~~~~---g~~~~~l~~~~~~~~--~~~v~iia~GGi~~~~di~kalalG 452 (590)
...+.+.|.++|+..+-.+ +. ++.|. ..-+.++..+++... +-.+|||..|||.+|.|+-.=+.+|
T Consensus 274 v~kk~~idg~IvsnttVsrp~~~~~~~~~~etGGLsG~plk~~st~~vR~mY~lt~g~IpiIG~GGV~SG~DA~EkiraG 353 (398)
T KOG1436|consen 274 VVKKLNIDGLIVSNTTVSRPKASLVNKLKEETGGLSGPPLKPISTNTVRAMYTLTRGKIPIIGCGGVSSGKDAYEKIRAG 353 (398)
T ss_pred HHHHhCccceeecCceeecCccccccccccccCCCCCCccchhHHHHHHHHHHhccCCCceEeecCccccHhHHHHHhcC
Confidence 3445889999874322211 11 12221 123334444454332 2259999999999999999999999
Q ss_pred CCEEEECccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecccceeEEeeCCchhch
Q psy1056 453 ASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRF 532 (590)
Q Consensus 453 A~~v~~g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~~~~ 532 (590)
|+.|++++.|. |+| -.+
T Consensus 354 ASlvQlyTal~-------------------yeG--------------------------------------------p~i 370 (398)
T KOG1436|consen 354 ASLVQLYTALV-------------------YEG--------------------------------------------PAI 370 (398)
T ss_pred chHHHHHHHHh-------------------hcC--------------------------------------------chh
Confidence 99999999882 333 123
Q ss_pred HHHHHhhhhhhCcccCcCcHHHHHHh
Q psy1056 533 LPYLQCGLKHGCQDIGAKSLSNLRAM 558 (590)
Q Consensus 533 ~~~~~~~l~~~m~~~G~~~i~~l~~~ 558 (590)
++.++.+|...|.--|-.++.|.+.+
T Consensus 371 ~~kIk~El~~ll~~kG~t~v~d~iG~ 396 (398)
T KOG1436|consen 371 IEKIKRELSALLKAKGFTSVDDAIGK 396 (398)
T ss_pred HHHHHHHHHHHHHhcCCCcHHHhccC
Confidence 78888999999988899998888653
|
|
| >PRK05581 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.04 Score=54.00 Aligned_cols=124 Identities=15% Similarity=0.208 Sum_probs=70.1
Q ss_pred HHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEec-cccCcHHHHHHHHCCCCEEEE-cccccccCCCc
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGG-NVLFGYQPRATLLNFIYQIEM-IKFIKKEYPDM 409 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g-~v~s~~~a~~l~~~Gvd~i~v-~~~~~~~~~~~ 409 (590)
.+.++.+.+.|++.+.++..+. ......++.++.. +..++.- +..+..+..+....++|+|-+ +.+.+ .
T Consensus 74 ~~~i~~~~~~g~d~v~vh~~~~--~~~~~~~~~~~~~--~~~~g~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g-----~ 144 (220)
T PRK05581 74 DRYVPDFAKAGADIITFHVEAS--EHIHRLLQLIKSA--GIKAGLVLNPATPLEPLEDVLDLLDLVLLMSVNPG-----F 144 (220)
T ss_pred HHHHHHHHHcCCCEEEEeeccc--hhHHHHHHHHHHc--CCEEEEEECCCCCHHHHHHHHhhCCEEEEEEECCC-----C
Confidence 3345666789999988876542 2334556666655 4443331 112333333334456898754 32221 2
Q ss_pred cccccchhHH---HHHHHHHhcCC--CcEEecCCCCCHHHHHHHHHcCCCEEEECccccCC
Q psy1056 410 QVIGRNGTAV---YRVAEYASRRG--VPVIADGGVQSVGHVMKALALGASTAMMGSLLAGT 465 (590)
Q Consensus 410 ~~~g~~~~~l---~~~~~~~~~~~--v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~ 465 (590)
++..+....+ .++++.....+ .++.++|||+. .++.+++..|||.|.+|+.+..+
T Consensus 145 tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~-~nv~~l~~~GaD~vvvgSai~~~ 204 (220)
T PRK05581 145 GGQKFIPEVLEKIRELRKLIDERGLDILIEVDGGINA-DNIKECAEAGADVFVAGSAVFGA 204 (220)
T ss_pred CcccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCH-HHHHHHHHcCCCEEEEChhhhCC
Confidence 2211122222 23333332212 34668999977 79999999999999999999654
|
|
| >PLN02411 12-oxophytodienoate reductase | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.024 Score=60.65 Aligned_cols=136 Identities=11% Similarity=0.050 Sum_probs=79.7
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCC--------------------c---h-hhHHHHHHHHHHhCCCceEEeccc------
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQG--------------------N---S-IYQIEMIKFIKKEYPDMQVIGGNV------ 379 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G--------------------~---~-~~~l~~i~~i~~~~~~vpvi~g~v------ 379 (590)
+..+.+....++|.|.|.|+.++| . + ++.++.++.+|+..++-.|.++=-
T Consensus 166 ~f~~AA~rA~~AGFDGVEIH~AhGYLl~QFLSp~tN~RtDeYGGSlENR~RF~lEIi~aVr~~vg~d~vgvRiS~~~~~~ 245 (391)
T PLN02411 166 HYRQAALNAIRAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQVVQAVVSAIGADRVGVRVSPAIDHL 245 (391)
T ss_pred HHHHHHHHHHHcCCCEEEEccccchHHHHhCCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCeEEEEEccccccc
Confidence 445577888899999999997552 1 1 445788999999874323443211
Q ss_pred ----c-C----cHHHHHHHHC------CCCEEEEcccccccCCCcc--ccccchhHHHHHHHHHhcCCCcEEecCCCCCH
Q psy1056 380 ----L-F----GYQPRATLLN------FIYQIEMIKFIKKEYPDMQ--VIGRNGTAVYRVAEYASRRGVPVIADGGVQSV 442 (590)
Q Consensus 380 ----~-s----~~~a~~l~~~------Gvd~i~v~~~~~~~~~~~~--~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~ 442 (590)
. + .+-++.|..+ |+|+|.|+........... ..+...........+.+..++|||+.||| ++
T Consensus 246 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~a~~ik~~v~~pvi~~G~i-~~ 324 (391)
T PLN02411 246 DATDSDPLNLGLAVVERLNKLQLQNGSKLAYLHVTQPRYTAYGQTESGRHGSEEEEAQLMRTLRRAYQGTFMCSGGF-TR 324 (391)
T ss_pred CCCCCcchhhHHHHHHHHHHHHhhcCCCeEEEEecCCcccccCCCcccccCCccchhHHHHHHHHHcCCCEEEECCC-CH
Confidence 0 1 1224444432 5999988532210000000 00100000011122222346899999999 67
Q ss_pred HHHHHHHHcC-CCEEEECccccCCC
Q psy1056 443 GHVMKALALG-ASTAMMGSLLAGTS 466 (590)
Q Consensus 443 ~di~kalalG-A~~v~~g~~l~~~~ 466 (590)
.++.++++-| ||+|.+|++|..-.
T Consensus 325 ~~a~~~l~~g~aDlV~~gR~~iadP 349 (391)
T PLN02411 325 ELGMQAVQQGDADLVSYGRLFISNP 349 (391)
T ss_pred HHHHHHHHcCCCCEEEECHHHHhCc
Confidence 8888999999 99999999886543
|
|
| >COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.017 Score=55.88 Aligned_cols=120 Identities=17% Similarity=0.099 Sum_probs=78.8
Q ss_pred HHHHHHHHcCCcEEEEecC-----CCchhhHHHHHHHHHHhCCC---ceEEecccc-CcH----HHHHHHHCCCCEEEEc
Q psy1056 333 NRLKLLSQAGVDVVILDSS-----QGNSIYQIEMIKFIKKEYPD---MQVIGGNVL-FGY----QPRATLLNFIYQIEMI 399 (590)
Q Consensus 333 e~~~~li~~gad~i~V~~~-----~G~~~~~l~~i~~i~~~~~~---vpvi~g~v~-s~~----~a~~l~~~Gvd~i~v~ 399 (590)
..++..++.|++-+-+-.+ .|+.+.+.+.|+.+++..++ +.+|+-... +.+ ..+-++++|+|+|+-|
T Consensus 81 ~Ea~~ai~~GAdEiDmVinig~~k~g~~~~V~~eI~~v~~a~~~~~~lKVIlEt~~Lt~ee~~~A~~i~~~aGAdFVKTS 160 (228)
T COG0274 81 AEAREAIENGADEIDMVINIGALKSGNWEAVEREIRAVVEACADAVVLKVILETGLLTDEEKRKACEIAIEAGADFVKTS 160 (228)
T ss_pred HHHHHHHHcCCCeeeeeeeHHHHhcCCHHHHHHHHHHHHHHhCCCceEEEEEeccccCHHHHHHHHHHHHHhCCCEEEcC
Confidence 3677788899986543322 35566677888888887654 344443222 332 2344667999999322
Q ss_pred ccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECc
Q psy1056 400 KFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGS 460 (590)
Q Consensus 400 ~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~ 460 (590)
- ||.+.|-|...+....+.. +..+.|=++|||||..|+.+.+.+||.-+...+
T Consensus 161 ----T---Gf~~~gAT~edv~lM~~~v-g~~vgvKaSGGIrt~eda~~~i~aga~RiGtSs 213 (228)
T COG0274 161 ----T---GFSAGGATVEDVKLMKETV-GGRVGVKASGGIRTAEDAKAMIEAGATRIGTSS 213 (228)
T ss_pred ----C---CCCCCCCCHHHHHHHHHHh-ccCceeeccCCcCCHHHHHHHHHHhHHHhcccc
Confidence 1 1443344766666666655 335889999999999999999999987664433
|
|
| >PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.021 Score=56.55 Aligned_cols=127 Identities=12% Similarity=0.006 Sum_probs=77.3
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCC-CCEEEE-cccccccCCC
Q psy1056 331 DKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNF-IYQIEM-IKFIKKEYPD 408 (590)
Q Consensus 331 ~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~G-vd~i~v-~~~~~~~~~~ 408 (590)
....++.+.++|++.+.++...+. ..+...++.+++.--.+-+.+..-.+.+..+.+++.+ +|.|-+ +++.+
T Consensus 77 p~~~i~~~~~~Gad~itvH~ea~~-~~~~~~l~~ik~~G~~~gval~p~t~~e~l~~~l~~~~vD~Vl~m~v~pG----- 150 (228)
T PTZ00170 77 PEKWVDDFAKAGASQFTFHIEATE-DDPKAVARKIREAGMKVGVAIKPKTPVEVLFPLIDTDLVDMVLVMTVEPG----- 150 (228)
T ss_pred HHHHHHHHHHcCCCEEEEeccCCc-hHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHccchhhhHHhhhcccC-----
Confidence 345668889999999998776442 1145667777765212222233334667777665433 566522 33322
Q ss_pred ccccccchhHHHHHHHHHhcC-CCcEEecCCCCCHHHHHHHHHcCCCEEEECccccC
Q psy1056 409 MQVIGRNGTAVYRVAEYASRR-GVPVIADGGVQSVGHVMKALALGASTAMMGSLLAG 464 (590)
Q Consensus 409 ~~~~g~~~~~l~~~~~~~~~~-~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~ 464 (590)
+.|..+....+..++++.... .+.|..+||| +...+..+...|||.+++|+++..
T Consensus 151 ~~gq~~~~~~~~ki~~~~~~~~~~~I~VdGGI-~~~ti~~~~~aGad~iVvGsaI~~ 206 (228)
T PTZ00170 151 FGGQSFMHDMMPKVRELRKRYPHLNIQVDGGI-NLETIDIAADAGANVIVAGSSIFK 206 (228)
T ss_pred CCCcEecHHHHHHHHHHHHhcccCeEEECCCC-CHHHHHHHHHcCCCEEEEchHHhC
Confidence 333222333444444432221 3778899999 456888999999999999998854
|
|
| >PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0059 Score=61.44 Aligned_cols=76 Identities=17% Similarity=0.131 Sum_probs=52.3
Q ss_pred cHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcc
Q psy1056 382 GYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSL 461 (590)
Q Consensus 382 ~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~ 461 (590)
.+-|+.+.++|++.+-+.-.. +. ..+-+.....+.++. +..++|++++|||++..|+.+++..||+.|++|+.
T Consensus 33 ~~~a~~~~~~G~~~i~i~dl~-~~---~~~~~~~~~~i~~i~---~~~~ipv~~~GGi~s~~~~~~~l~~Ga~~Viigt~ 105 (253)
T PRK02083 33 VELAKRYNEEGADELVFLDIT-AS---SEGRDTMLDVVERVA---EQVFIPLTVGGGIRSVEDARRLLRAGADKVSINSA 105 (253)
T ss_pred HHHHHHHHHcCCCEEEEEeCC-cc---cccCcchHHHHHHHH---HhCCCCEEeeCCCCCHHHHHHHHHcCCCEEEEChh
Confidence 466777888999988551111 11 011122333344443 34469999999999999999999999999999987
Q ss_pred ccC
Q psy1056 462 LAG 464 (590)
Q Consensus 462 l~~ 464 (590)
+..
T Consensus 106 ~l~ 108 (253)
T PRK02083 106 AVA 108 (253)
T ss_pred Hhh
Confidence 644
|
|
| >PRK08745 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.066 Score=52.65 Aligned_cols=123 Identities=15% Similarity=0.063 Sum_probs=79.0
Q ss_pred HHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEE-cccccccCCCcc
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEM-IKFIKKEYPDMQ 410 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v-~~~~~~~~~~~~ 410 (590)
...++.+.++|++.+.++.-.. ....+.+.++|+.--..-+.+.--...+....+++. +|.|-+ +++.+ |.
T Consensus 75 ~~~i~~~~~~gad~I~~H~Ea~--~~~~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l~~-vD~VlvMtV~PG-----f~ 146 (223)
T PRK08745 75 DRIVPDFADAGATTISFHPEAS--RHVHRTIQLIKSHGCQAGLVLNPATPVDILDWVLPE-LDLVLVMSVNPG-----FG 146 (223)
T ss_pred HHHHHHHHHhCCCEEEEcccCc--ccHHHHHHHHHHCCCceeEEeCCCCCHHHHHHHHhh-cCEEEEEEECCC-----CC
Confidence 4567888999999999876532 224567788887632223333333355666666653 677754 54433 55
Q ss_pred ccccchhH---HHHHHHHHhcCC--CcEEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 411 VIGRNGTA---VYRVAEYASRRG--VPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 411 ~~g~~~~~---l~~~~~~~~~~~--v~iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
|..+...+ +.++++...+.+ ..|-.|||| +...+.+..+.|||.+++|+.+-
T Consensus 147 GQ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGGI-~~eti~~l~~aGaDi~V~GSaiF 203 (223)
T PRK08745 147 GQAFIPSALDKLRAIRKKIDALGKPIRLEIDGGV-KADNIGAIAAAGADTFVAGSAIF 203 (223)
T ss_pred CccccHHHHHHHHHHHHHHHhcCCCeeEEEECCC-CHHHHHHHHHcCCCEEEEChhhh
Confidence 54443333 444444444333 568889999 57788899999999999998874
|
|
| >TIGR01334 modD putative molybdenum utilization protein ModD | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.052 Score=55.02 Aligned_cols=91 Identities=12% Similarity=0.045 Sum_probs=69.2
Q ss_pred hHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHh--cCCCcEE
Q psy1056 357 YQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYAS--RRGVPVI 434 (590)
Q Consensus 357 ~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~--~~~v~ii 434 (590)
.+.+.++.+|+..|..++.+ ++.+.++++++.++|+|.|-+. . + +++.+.++.+..+ ..++.+.
T Consensus 174 ~i~~av~~~r~~~~~~kIeV-Ev~tleea~ea~~~GaDiI~lD---n-----~-----~~e~l~~~v~~l~~~~~~~~le 239 (277)
T TIGR01334 174 DWGGAIGRLKQTAPERKITV-EADTIEQALTVLQASPDILQLD---K-----F-----TPQQLHHLHERLKFFDHIPTLA 239 (277)
T ss_pred cHHHHHHHHHHhCCCCCEEE-ECCCHHHHHHHHHcCcCEEEEC---C-----C-----CHHHHHHHHHHHhccCCCEEEE
Confidence 46688888998887766555 9999999999999999999221 1 1 3344444444442 2357899
Q ss_pred ecCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 435 ADGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 435 a~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
++||| |...+..=...|+|.+.+|.++
T Consensus 240 asGGI-~~~ni~~ya~~GvD~is~gal~ 266 (277)
T TIGR01334 240 AAGGI-NPENIADYIEAGIDLFITSAPY 266 (277)
T ss_pred EECCC-CHHHHHHHHhcCCCEEEeCcce
Confidence 99999 8899988888999999999876
|
The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown. |
| >PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.016 Score=58.81 Aligned_cols=90 Identities=12% Similarity=0.069 Sum_probs=67.5
Q ss_pred HHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecC
Q psy1056 358 QIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADG 437 (590)
Q Consensus 358 ~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~G 437 (590)
+.+.++.+|+.+++...|--++-+.++++++.++|+|+|-+. .+ .++.+.++.+... ..+|+.|.|
T Consensus 174 ~~~~v~~aR~~~~~~~~Igvsv~tleea~~A~~~gaDyI~lD-----------~~--~~e~l~~~~~~~~-~~i~i~AiG 239 (277)
T PRK08072 174 ITKAVTSVREKLGHMVKIEVETETEEQVREAVAAGADIIMFD-----------NR--TPDEIREFVKLVP-SAIVTEASG 239 (277)
T ss_pred HHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHcCCCEEEEC-----------CC--CHHHHHHHHHhcC-CCceEEEEC
Confidence 567888889888644445558889999999999999999321 11 2333444444322 247888999
Q ss_pred CCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 438 GVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 438 Gi~~~~di~kalalGA~~v~~g~~l 462 (590)
|| |...+..-.+.|||.+.+|.+.
T Consensus 240 GI-t~~ni~~~a~~Gvd~IAvg~l~ 263 (277)
T PRK08072 240 GI-TLENLPAYGGTGVDYISLGFLT 263 (277)
T ss_pred CC-CHHHHHHHHHcCCCEEEEChhh
Confidence 99 8999999999999999999866
|
|
| >cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP) | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.041 Score=53.36 Aligned_cols=119 Identities=20% Similarity=0.127 Sum_probs=70.1
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEe-ccccCcHHH--HHHHHCCCCEEEEcccccccCC
Q psy1056 331 DKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIG-GNVLFGYQP--RATLLNFIYQIEMIKFIKKEYP 407 (590)
Q Consensus 331 ~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~-g~v~s~~~a--~~l~~~Gvd~i~v~~~~~~~~~ 407 (590)
..+..+.+.+.+++.++++..+ . .+.++.+++.+ +.+++- =.+.+.... .+....|+|++.+.-.+...
T Consensus 62 ~~~i~~ia~~~~~d~Vqlhg~e--~---~~~~~~l~~~~-~~~~i~~i~~~~~~~~~~~~~~~~~aD~il~dt~~~~~-- 133 (203)
T cd00405 62 LEEILEIAEELGLDVVQLHGDE--S---PEYCAQLRARL-GLPVIKAIRVKDEEDLEKAAAYAGEVDAILLDSKSGGG-- 133 (203)
T ss_pred HHHHHHHHHhcCCCEEEECCCC--C---HHHHHHHHhhc-CCcEEEEEecCChhhHHHhhhccccCCEEEEcCCCCCC--
Confidence 3455566667899999986543 2 34566666655 344441 123333222 24455799999442111111
Q ss_pred CccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcC-CCEEEECccc
Q psy1056 408 DMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALG-ASTAMMGSLL 462 (590)
Q Consensus 408 ~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalG-A~~v~~g~~l 462 (590)
..|.|. ......++++. ..+|+++.||| |+..+..+++.| ++++-+++.+
T Consensus 134 -~Gg~g~-~~~~~~l~~~~--~~~PvilaGGI-~~~Nv~~~i~~~~~~gvdv~S~i 184 (203)
T cd00405 134 -GGGTGK-TFDWSLLRGLA--SRKPVILAGGL-TPDNVAEAIRLVRPYGVDVSSGV 184 (203)
T ss_pred -CCCCcc-eEChHHhhccc--cCCCEEEECCC-ChHHHHHHHHhcCCCEEEcCCcc
Confidence 111222 11111222222 35899999999 999999999999 9999888877
|
Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes. |
| >cd04732 HisA HisA | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0081 Score=59.57 Aligned_cols=76 Identities=16% Similarity=0.158 Sum_probs=54.0
Q ss_pred CcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECc
Q psy1056 381 FGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGS 460 (590)
Q Consensus 381 s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~ 460 (590)
..+-|+.+.+.|+|.+.|.-... . +.+.+.....+.++.+ ..++|++++|||++..++.+++..|||.|++|+
T Consensus 31 p~~~a~~~~~~g~d~l~v~dl~~-~---~~~~~~~~~~i~~i~~---~~~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs 103 (234)
T cd04732 31 PVEVAKKWEEAGAKWLHVVDLDG-A---KGGEPVNLELIEEIVK---AVGIPVQVGGGIRSLEDIERLLDLGVSRVIIGT 103 (234)
T ss_pred HHHHHHHHHHcCCCEEEEECCCc-c---ccCCCCCHHHHHHHHH---hcCCCEEEeCCcCCHHHHHHHHHcCCCEEEECc
Confidence 34677888889999997631111 1 1222224444444443 346999999999999999999999999999998
Q ss_pred ccc
Q psy1056 461 LLA 463 (590)
Q Consensus 461 ~l~ 463 (590)
...
T Consensus 104 ~~l 106 (234)
T cd04732 104 AAV 106 (234)
T ss_pred hHH
Confidence 765
|
Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. |
| >PRK08005 epimerase; Validated | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.065 Score=52.11 Aligned_cols=122 Identities=13% Similarity=0.037 Sum_probs=77.8
Q ss_pred HHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEE-cccccccCCCcc
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEM-IKFIKKEYPDMQ 410 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v-~~~~~~~~~~~~ 410 (590)
...++.+.++|++.+.++.... ......++.+|+.--..-+.+.--...+..+.+++ =+|.|-+ +++.+ |.
T Consensus 71 ~~~i~~~~~~gad~It~H~Ea~--~~~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l~-~vD~VlvMsV~PG-----f~ 142 (210)
T PRK08005 71 QRWLPWLAAIRPGWIFIHAESV--QNPSEILADIRAIGAKAGLALNPATPLLPYRYLAL-QLDALMIMTSEPD-----GR 142 (210)
T ss_pred HHHHHHHHHhCCCEEEEcccCc--cCHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHH-hcCEEEEEEecCC-----Cc
Confidence 4567888999999998876521 22456778888763223333433345566666654 3677754 55433 55
Q ss_pred ccccchhHHHHHHHHHhcC-CCcEEecCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 411 VIGRNGTAVYRVAEYASRR-GVPVIADGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 411 ~~g~~~~~l~~~~~~~~~~-~v~iia~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
|+.+...++..+++..+.. ...|-+|||| |..-+.++.+.|||.+++|+.+
T Consensus 143 GQ~f~~~~~~KI~~l~~~~~~~~I~VDGGI-~~~~i~~l~~aGad~~V~Gsai 194 (210)
T PRK08005 143 GQQFIAAMCEKVSQSREHFPAAECWADGGI-TLRAARLLAAAGAQHLVIGRAL 194 (210)
T ss_pred cceecHHHHHHHHHHHHhcccCCEEEECCC-CHHHHHHHHHCCCCEEEEChHh
Confidence 5544444444444332211 2469999999 5777889999999999999877
|
|
| >PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0076 Score=59.73 Aligned_cols=75 Identities=17% Similarity=0.073 Sum_probs=52.9
Q ss_pred cHHHHHHHHCCCCEEEE-cccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECc
Q psy1056 382 GYQPRATLLNFIYQIEM-IKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGS 460 (590)
Q Consensus 382 ~~~a~~l~~~Gvd~i~v-~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~ 460 (590)
.+.|+.+.+.|++.+.+ ..... +.+-+.....+.++++ ..++|++++|||++..|+.+++.+||+.|++|+
T Consensus 33 ~~~a~~~~~~g~~~i~v~dld~~-----~~g~~~~~~~i~~i~~---~~~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~ 104 (233)
T PRK00748 33 VAQAKAWEDQGAKWLHLVDLDGA-----KAGKPVNLELIEAIVK---AVDIPVQVGGGIRSLETVEALLDAGVSRVIIGT 104 (233)
T ss_pred HHHHHHHHHcCCCEEEEEeCCcc-----ccCCcccHHHHHHHHH---HCCCCEEEcCCcCCHHHHHHHHHcCCCEEEECc
Confidence 45577888899999965 22111 1111123333444443 346899999999999999999999999999998
Q ss_pred cccC
Q psy1056 461 LLAG 464 (590)
Q Consensus 461 ~l~~ 464 (590)
.+..
T Consensus 105 ~~l~ 108 (233)
T PRK00748 105 AAVK 108 (233)
T ss_pred hHHh
Confidence 7754
|
|
| >TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1 | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.017 Score=57.90 Aligned_cols=81 Identities=15% Similarity=0.126 Sum_probs=62.7
Q ss_pred HHHHHHHHHhCCCceEEec-cccCcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHH-hcCCCcEEec
Q psy1056 359 IEMIKFIKKEYPDMQVIGG-NVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYA-SRRGVPVIAD 436 (590)
Q Consensus 359 l~~i~~i~~~~~~vpvi~g-~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~-~~~~v~iia~ 436 (590)
.+.|+.+++.. ++|||.+ -++...+|+.|.++|+|+|| ++.+. ++ ..+.-... .++++|+++
T Consensus 56 p~~I~~I~~~V-~iPVig~~kigh~~Ea~~L~~~GvDiID---eTe~l---------rP--ade~~~~~K~~f~vpfma- 119 (287)
T TIGR00343 56 PKMIKEIMDAV-SIPVMAKVRIGHFVEAQILEALGVDYID---ESEVL---------TP--ADWTFHIDKKKFKVPFVC- 119 (287)
T ss_pred HHHHHHHHHhC-CCCEEEEeeccHHHHHHHHHHcCCCEEE---ccCCC---------Cc--HHHHHHHHHHHcCCCEEc-
Confidence 68899999988 8999964 55679999999999999994 55544 22 11221111 234799999
Q ss_pred CCCCCHHHHHHHHHcCCCEE
Q psy1056 437 GGVQSVGHVMKALALGASTA 456 (590)
Q Consensus 437 GGi~~~~di~kalalGA~~v 456 (590)
|++|-++...+..+|||.+
T Consensus 120 -d~~~l~EAlrai~~GadmI 138 (287)
T TIGR00343 120 -GARDLGEALRRINEGAAMI 138 (287)
T ss_pred -cCCCHHHHHHHHHCCCCEE
Confidence 9999999999999999988
|
This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals. |
| >PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0093 Score=59.47 Aligned_cols=74 Identities=16% Similarity=0.172 Sum_probs=52.1
Q ss_pred cHHHHHHHHCCCCEEEEc-ccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECc
Q psy1056 382 GYQPRATLLNFIYQIEMI-KFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGS 460 (590)
Q Consensus 382 ~~~a~~l~~~Gvd~i~v~-~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~ 460 (590)
.+.++.+.+.|++.+-+. ..... .+...... .+.+.+...++|++.+|||++..|+.+++.+||+.|++|+
T Consensus 35 ~e~a~~~~~~G~~~l~i~dl~~~~-----~~~~~~~~---~i~~i~~~~~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs 106 (241)
T PRK13585 35 VEVAKRWVDAGAETLHLVDLDGAF-----EGERKNAE---AIEKIIEAVGVPVQLGGGIRSAEDAASLLDLGVDRVILGT 106 (241)
T ss_pred HHHHHHHHHcCCCEEEEEechhhh-----cCCcccHH---HHHHHHHHcCCcEEEcCCcCCHHHHHHHHHcCCCEEEECh
Confidence 467778889999998551 11110 01011222 3444555567999999999999999999999999999998
Q ss_pred ccc
Q psy1056 461 LLA 463 (590)
Q Consensus 461 ~l~ 463 (590)
...
T Consensus 107 ~~~ 109 (241)
T PRK13585 107 AAV 109 (241)
T ss_pred HHh
Confidence 654
|
|
| >cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS) | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.046 Score=52.78 Aligned_cols=121 Identities=14% Similarity=0.183 Sum_probs=81.9
Q ss_pred chhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEec-cccCc--HHHHHHHHCCCCEEEEcccccc
Q psy1056 328 READKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGG-NVLFG--YQPRATLLNFIYQIEMIKFIKK 404 (590)
Q Consensus 328 ~~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g-~v~s~--~~a~~l~~~Gvd~i~v~~~~~~ 404 (590)
.++..+.++.+.+. ++.+.+..+- ....-.+.++.+++.+++.|+++. .+.+. ..++.+.++|+|++.+..+..
T Consensus 12 ~~~~~~~~~~l~~~-i~~ieig~~~-~~~~g~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~~~~- 88 (202)
T cd04726 12 LEEALELAKKVPDG-VDIIEAGTPL-IKSEGMEAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADIVTVLGAAP- 88 (202)
T ss_pred HHHHHHHHHHhhhc-CCEEEcCCHH-HHHhCHHHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCEEEEEeeCC-
Confidence 34566778888888 8888773221 111116788899988778888764 33344 357889999999994321111
Q ss_pred cCCCccccccchhHHHHHHHHHhcCCCcEEec-CCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 405 EYPDMQVIGRNGTAVYRVAEYASRRGVPVIAD-GGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 405 ~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~-GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
...+.++.+.+++.+++++.+ =+..|+.++.+++..|+|.+.++..+
T Consensus 89 -----------~~~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~~~~~~~d~v~~~~~~ 136 (202)
T cd04726 89 -----------LSTIKKAVKAAKKYGKEVQVDLIGVEDPEKRAKLLKLGVDIVILHRGI 136 (202)
T ss_pred -----------HHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHCCCCEEEEcCcc
Confidence 112334555566667888765 68899999999999999999876443
|
KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates. |
| >PRK14024 phosphoribosyl isomerase A; Provisional | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.012 Score=58.80 Aligned_cols=74 Identities=19% Similarity=0.059 Sum_probs=52.4
Q ss_pred cHHHHHHHHCCCCEEEE-cccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECc
Q psy1056 382 GYQPRATLLNFIYQIEM-IKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGS 460 (590)
Q Consensus 382 ~~~a~~l~~~Gvd~i~v-~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~ 460 (590)
.+.|+.+.+.|+|.+-+ ..... .+.+.....+.++. +..++|+.++|||++..|+.+.|.+||+.+.+|+
T Consensus 35 ~~~a~~~~~~g~~~l~ivDLd~~------~g~~~n~~~i~~i~---~~~~~pv~vgGGirs~edv~~~l~~Ga~kvviGs 105 (241)
T PRK14024 35 LDAALAWQRDGAEWIHLVDLDAA------FGRGSNRELLAEVV---GKLDVKVELSGGIRDDESLEAALATGCARVNIGT 105 (241)
T ss_pred HHHHHHHHHCCCCEEEEEecccc------CCCCccHHHHHHHH---HHcCCCEEEcCCCCCHHHHHHHHHCCCCEEEECc
Confidence 35677888899998855 21111 11122334444444 3446999999999999999999999999999998
Q ss_pred cccC
Q psy1056 461 LLAG 464 (590)
Q Consensus 461 ~l~~ 464 (590)
.+..
T Consensus 106 ~~l~ 109 (241)
T PRK14024 106 AALE 109 (241)
T ss_pred hHhC
Confidence 7754
|
|
| >PRK03512 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.048 Score=53.30 Aligned_cols=114 Identities=17% Similarity=0.082 Sum_probs=68.2
Q ss_pred HHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcc-cccccCCC-cccccc
Q psy1056 337 LLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIK-FIKKEYPD-MQVIGR 414 (590)
Q Consensus 337 ~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~-~~~~~~~~-~~~~g~ 414 (590)
...+.+++.+|+... +. .....++..+.-.++--.+-+.+++.++.+.|+||+-++. ..|..+++ ....|+
T Consensus 74 lA~~~~adGVHlg~~--d~-----~~~~~r~~~~~~~~iG~S~H~~~e~~~A~~~gaDYi~lgpvf~T~tK~~~~~~~G~ 146 (211)
T PRK03512 74 LAIKHQAYGVHLGQE--DL-----ETADLNAIRAAGLRLGVSTHDDMEIDVALAARPSYIALGHVFPTQTKQMPSAPQGL 146 (211)
T ss_pred HHHHcCCCEEEcChH--hC-----CHHHHHHhcCCCCEEEEeCCCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCH
Confidence 344557777776221 11 0123333333233444466688899999999999997732 22322111 111222
Q ss_pred chhHHHHHHHHHhc-CCCcEEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 415 NGTAVYRVAEYASR-RGVPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 415 ~~~~l~~~~~~~~~-~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
..+.+.+.. .++|++|=||| +..++...++.||++|.+-+.+.
T Consensus 147 -----~~l~~~~~~~~~~PV~AiGGI-~~~ni~~l~~~Ga~GiAvisai~ 190 (211)
T PRK03512 147 -----AQLARHVERLADYPTVAIGGI-SLERAPAVLATGVGSIAVVSAIT 190 (211)
T ss_pred -----HHHHHHHHhcCCCCEEEECCC-CHHHHHHHHHcCCCEEEEhhHhh
Confidence 122333222 35999999999 68999999999999997766664
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.0018 Score=65.47 Aligned_cols=125 Identities=11% Similarity=0.198 Sum_probs=85.2
Q ss_pred EcCCCCchHHHHHHHHHhhhcCCCcccccc--cccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEE
Q psy1056 155 LDSSQGNSIYQIEMIKYIKKEYPDMQVIGG--NVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLL 229 (590)
Q Consensus 155 ~~~~~~~~~~~~~~v~~vk~~~~~~~im~~--~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lv 229 (590)
..+++.|...+++.+...+- +.+.++|.. +... ...-..+...+ .......+.+++. +++.+
T Consensus 254 ~~PAndYV~~Fv~~v~~~~V-ltA~~IM~~~~~~~~~~~~~~~~~al~~~---------~~~~~~~~~~~~~---~~~~~ 320 (386)
T COG4175 254 LNPANDYVRDFVRNVDRSRV-LTAKDIMRRPDLLIRKTPGDGPRVALKLL---------RDEGREYGYAVDR---GNKFV 320 (386)
T ss_pred cCccHHHHHHHHhcCChhhe-eeHHHhhcccccccccccccccchhhhhh---------hhccchhhHHHhc---cCcee
Confidence 34556666666666666554 455557763 1111 22333455555 4444444555555 57899
Q ss_pred EEEecchhhccccccccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccC
Q psy1056 230 GIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRD 307 (590)
Q Consensus 230 Givt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~ 307 (590)
|+|+..++... .+.+ ++.++.+++++.+.+..+.+.... +||+|++++++|++++..++.++.
T Consensus 321 g~v~~~~~~~~------------~~~~--~~~~v~~d~~~~~~~~~~~~~~~p-~aVvde~~r~vG~i~~~~vl~aL~ 383 (386)
T COG4175 321 GVVSIDSLVKA------------ALID--DVLTVDADTPLSEILARIRQAPCP-VAVVDEDGRYVGIISRGELLEALA 383 (386)
T ss_pred eEEeccchhcc------------cccc--cccccCccchHHHHHHHHhcCCCc-eeEEcCCCcEEEEecHHHHHHHHh
Confidence 99998775411 4555 788999999999999888777654 899999999999999999887754
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.012 Score=62.32 Aligned_cols=45 Identities=18% Similarity=0.292 Sum_probs=39.4
Q ss_pred cccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEecc
Q psy1056 25 FIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSR 72 (590)
Q Consensus 25 m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~ 72 (590)
|...++...++.+..++++.|..++...+.|+|++ +++.|.++.+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~~~~~ 292 (363)
T TIGR01186 248 MNTGPITKTADKGPRSALQLMRDERVDSLYVVDRQ---NKLVGVVDVE 292 (363)
T ss_pred ccccceeecCCCCHHHHHHHHHhcCCceEEEEcCC---CCEEEEEeHH
Confidence 44455667888899999999999999999999987 7999999998
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.069 Score=56.81 Aligned_cols=116 Identities=17% Similarity=0.087 Sum_probs=75.0
Q ss_pred HHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEe--ccccCcH-HHHHHHHCCCCEEEEc--ccccccCCCc
Q psy1056 335 LKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIG--GNVLFGY-QPRATLLNFIYQIEMI--KFIKKEYPDM 409 (590)
Q Consensus 335 ~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~--g~v~s~~-~a~~l~~~Gvd~i~v~--~~~~~~~~~~ 409 (590)
++.+.++|++.+.++...+ ...+...++.+++. ++.+++ =++.++. .++.+ ..++|++.+. +... . .
T Consensus 243 v~~~a~aGAD~vTVH~ea~-~~ti~~ai~~akk~--GikvgVD~lnp~tp~e~i~~l-~~~vD~Vllht~vdp~-~---~ 314 (391)
T PRK13307 243 ARMAADATADAVVISGLAP-ISTIEKAIHEAQKT--GIYSILDMLNVEDPVKLLESL-KVKPDVVELHRGIDEE-G---T 314 (391)
T ss_pred HHHHHhcCCCEEEEeccCC-HHHHHHHHHHHHHc--CCEEEEEEcCCCCHHHHHHHh-hCCCCEEEEccccCCC-c---c
Confidence 7778899999999987543 23345566666665 444433 3444544 44444 7899998552 1111 1 0
Q ss_pred cccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccC
Q psy1056 410 QVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAG 464 (590)
Q Consensus 410 ~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~ 464 (590)
......+.++++. ..+++|.++|||. ..++..++.+|||.+.+|+.+..
T Consensus 315 ---~~~~~kI~~ikk~--~~~~~I~VdGGI~-~eti~~l~~aGADivVVGsaIf~ 363 (391)
T PRK13307 315 ---EHAWGNIKEIKKA--GGKILVAVAGGVR-VENVEEALKAGADILVVGRAITK 363 (391)
T ss_pred ---cchHHHHHHHHHh--CCCCcEEEECCcC-HHHHHHHHHcCCCEEEEeHHHhC
Confidence 0022234444443 2358999999997 88899999999999999998854
|
|
| >PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.03 Score=56.97 Aligned_cols=90 Identities=12% Similarity=0.075 Sum_probs=66.8
Q ss_pred HHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHh--cCCCcEEe
Q psy1056 358 QIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYAS--RRGVPVIA 435 (590)
Q Consensus 358 ~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~--~~~v~iia 435 (590)
+.+.++.+++..|..++.+ +|.|.+++..+.++|+|.|-+. . + +++.+.++.+..+ ..++.+.+
T Consensus 186 i~~ai~~~r~~~~~~kIeV-Ev~tl~ea~eal~~gaDiI~LD---n-----m-----~~e~vk~av~~~~~~~~~v~iea 251 (289)
T PRK07896 186 VVAALRAVRAAAPDLPCEV-EVDSLEQLDEVLAEGAELVLLD---N-----F-----PVWQTQEAVQRRDARAPTVLLES 251 (289)
T ss_pred HHHHHHHHHHhCCCCCEEE-EcCCHHHHHHHHHcCCCEEEeC---C-----C-----CHHHHHHHHHHHhccCCCEEEEE
Confidence 5678888898887777666 9999999999999999999321 1 1 2333333333321 23478999
Q ss_pred cCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 436 DGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 436 ~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
|||| |...+..=-..|+|.+.+|.+.
T Consensus 252 SGGI-~~~ni~~yA~tGvD~Is~galt 277 (289)
T PRK07896 252 SGGL-TLDTAAAYAETGVDYLAVGALT 277 (289)
T ss_pred ECCC-CHHHHHHHHhcCCCEEEeChhh
Confidence 9999 7888887777899999999876
|
|
| >PRK14057 epimerase; Provisional | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.097 Score=52.21 Aligned_cols=122 Identities=12% Similarity=0.062 Sum_probs=77.8
Q ss_pred HHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCC---------CceEEeccccCcHHHHHHHHCCCCEEEE-ccc
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYP---------DMQVIGGNVLFGYQPRATLLNFIYQIEM-IKF 401 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~---------~vpvi~g~v~s~~~a~~l~~~Gvd~i~v-~~~ 401 (590)
...++.+.++|++.+.++.-.- ......+.++|+.-- ..-+.+.--...+..+.+++. +|.|-+ ++.
T Consensus 88 ~~~i~~~~~aGad~It~H~Ea~--~~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l~~-vD~VLvMtV~ 164 (254)
T PRK14057 88 WTAAQACVKAGAHCITLQAEGD--IHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPILSD-VEVIQLLAVN 164 (254)
T ss_pred HHHHHHHHHhCCCEEEEeeccc--cCHHHHHHHHHHcCCCcccccccceeEEEECCCCCHHHHHHHHHh-CCEEEEEEEC
Confidence 4567888999999998876421 224567777777621 012223222355666666654 787754 544
Q ss_pred ccccCCCccccccchhH---HHHHHHHHhcCC--CcEEecCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 402 IKKEYPDMQVIGRNGTA---VYRVAEYASRRG--VPVIADGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 402 ~~~~~~~~~~~g~~~~~---l~~~~~~~~~~~--v~iia~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
.+ |.|......+ +.++++...+.+ +.|-+|||| +..-+.++.++|||.+++|+.+
T Consensus 165 PG-----fgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI-~~~ti~~l~~aGad~~V~GSal 224 (254)
T PRK14057 165 PG-----YGSKMRSSDLHERVAQLLCLLGDKREGKIIVIDGSL-TQDQLPSLIAQGIDRVVSGSAL 224 (254)
T ss_pred CC-----CCchhccHHHHHHHHHHHHHHHhcCCCceEEEECCC-CHHHHHHHHHCCCCEEEEChHh
Confidence 33 5554443333 444445544433 668899999 5668889999999999999877
|
|
| >PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.023 Score=57.14 Aligned_cols=81 Identities=15% Similarity=0.105 Sum_probs=62.1
Q ss_pred HHHHHHHHHhCCCceEEec-cccCcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHH-HhcCCCcEEec
Q psy1056 359 IEMIKFIKKEYPDMQVIGG-NVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEY-ASRRGVPVIAD 436 (590)
Q Consensus 359 l~~i~~i~~~~~~vpvi~g-~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~-~~~~~v~iia~ 436 (590)
.+.|+.+++.. ++||+.+ -++...+|+.|.++|+|+|| ++.+. ++ ..+.... -.++++|+++
T Consensus 63 p~~I~aIk~~V-~iPVigk~Righ~~Ea~~L~~~GvDiID---~Te~l---------rp--ad~~~~~~K~~f~~~fma- 126 (293)
T PRK04180 63 PKMIEEIMDAV-SIPVMAKARIGHFVEAQILEALGVDYID---ESEVL---------TP--ADEEYHIDKWDFTVPFVC- 126 (293)
T ss_pred HHHHHHHHHhC-CCCeEEeehhhHHHHHHHHHHcCCCEEe---ccCCC---------Cc--hHHHHHHHHHHcCCCEEc-
Confidence 57888999887 8999965 45568999999999999994 54444 22 1122111 1234799999
Q ss_pred CCCCCHHHHHHHHHcCCCEE
Q psy1056 437 GGVQSVGHVMKALALGASTA 456 (590)
Q Consensus 437 GGi~~~~di~kalalGA~~v 456 (590)
|++|-.+...+..+|||.+
T Consensus 127 -d~~~l~EAlrai~~GadmI 145 (293)
T PRK04180 127 -GARNLGEALRRIAEGAAMI 145 (293)
T ss_pred -cCCCHHHHHHHHHCCCCee
Confidence 9999999999999999998
|
|
| >PRK09722 allulose-6-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.13 Score=50.75 Aligned_cols=121 Identities=14% Similarity=0.104 Sum_probs=76.7
Q ss_pred HHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEE-cccccccCCCcc
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEM-IKFIKKEYPDMQ 410 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v-~~~~~~~~~~~~ 410 (590)
...++.+.++|++.+.++.-.-. ......++.+|+.--..-+.+.--...+....++.. +|.|-| +++.+ |.
T Consensus 72 ~~~i~~~~~aGad~it~H~Ea~~-~~~~~~i~~Ik~~G~kaGlalnP~T~~~~l~~~l~~-vD~VLvMsV~PG-----f~ 144 (229)
T PRK09722 72 QDYIDQLADAGADFITLHPETIN-GQAFRLIDEIRRAGMKVGLVLNPETPVESIKYYIHL-LDKITVMTVDPG-----FA 144 (229)
T ss_pred HHHHHHHHHcCCCEEEECccCCc-chHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHh-cCEEEEEEEcCC-----Cc
Confidence 45678899999999988765211 123556777777632233334333455566666553 687754 55433 55
Q ss_pred ccccchhH---HHHHHHHHhcCC--CcEEecCCCCCHHHHHHHHHcCCCEEEECc
Q psy1056 411 VIGRNGTA---VYRVAEYASRRG--VPVIADGGVQSVGHVMKALALGASTAMMGS 460 (590)
Q Consensus 411 ~~g~~~~~---l~~~~~~~~~~~--v~iia~GGi~~~~di~kalalGA~~v~~g~ 460 (590)
|..+...+ +.++++...+.+ +.|-.||||. ..-+.++.+.|||.+++|+
T Consensus 145 GQ~fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~~i~~~~~aGad~~V~Gs 198 (229)
T PRK09722 145 GQPFIPEMLDKIAELKALRERNGLEYLIEVDGSCN-QKTYEKLMEAGADVFIVGT 198 (229)
T ss_pred chhccHHHHHHHHHHHHHHHhcCCCeEEEEECCCC-HHHHHHHHHcCCCEEEECh
Confidence 55544444 444444444433 5688999996 6678899999999999995
|
|
| >PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.036 Score=56.31 Aligned_cols=90 Identities=12% Similarity=-0.013 Sum_probs=67.5
Q ss_pred hHHHHHHHHHHhCC-CceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEe
Q psy1056 357 YQIEMIKFIKKEYP-DMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIA 435 (590)
Q Consensus 357 ~~l~~i~~i~~~~~-~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia 435 (590)
++.+.++.+|+..| ..++.+ ||.|.++++++.++|+|.|-+ -. + +++.+.++.+..+. .+.+.+
T Consensus 182 ~i~~av~~~r~~~~~~~kIeV-Ev~tleea~~a~~agaDiImL---Dn-----m-----spe~l~~av~~~~~-~~~lea 246 (290)
T PRK06559 182 SVQKAIAQARAYAPFVKMVEV-EVESLAAAEEAAAAGADIIML---DN-----M-----SLEQIEQAITLIAG-RSRIEC 246 (290)
T ss_pred cHHHHHHHHHHhCCCCCeEEE-ECCCHHHHHHHHHcCCCEEEE---CC-----C-----CHHHHHHHHHHhcC-ceEEEE
Confidence 35678899998886 455555 999999999999999999922 11 1 34445555554433 578999
Q ss_pred cCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 436 DGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 436 ~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
|||| |...+..=-..|+|.+.+|.+.
T Consensus 247 SGGI-~~~ni~~yA~tGVD~Is~galt 272 (290)
T PRK06559 247 SGNI-DMTTISRFRGLAIDYVSSGSLT 272 (290)
T ss_pred ECCC-CHHHHHHHHhcCCCEEEeCccc
Confidence 9999 7788876667899999999866
|
|
| >TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.045 Score=57.81 Aligned_cols=113 Identities=15% Similarity=0.128 Sum_probs=68.5
Q ss_pred HHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEe--ccccCcHHHHHHHHCCCCEEEEcccccccCCCcc
Q psy1056 333 NRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIG--GNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQ 410 (590)
Q Consensus 333 e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~--g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~ 410 (590)
+.+..+.+.+.+.+ +.+.+.+.++.+++. .+.+-+ ......+-++.++++|+|.|.+... ++....+.
T Consensus 103 ~aa~~~~e~~~~~~-------~p~l~~~ii~~vr~a--~VtvkiRl~~~~~~e~a~~l~eAGad~I~ihgr-t~~q~~~s 172 (369)
T TIGR01304 103 AATRLLQELHAAPL-------KPELLGERIAEVRDS--GVITAVRVSPQNAREIAPIVVKAGADLLVIQGT-LVSAEHVS 172 (369)
T ss_pred HHHHHHHHcCCCcc-------ChHHHHHHHHHHHhc--ceEEEEecCCcCHHHHHHHHHHCCCCEEEEecc-chhhhccC
Confidence 44445555555442 234456677777775 233222 1223457788999999999955211 11100001
Q ss_pred ccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECc
Q psy1056 411 VIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGS 460 (590)
Q Consensus 411 ~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~ 460 (590)
+.+ .+.. +.+..+..++|||+ |++.+..++.+++..|||+|++|+
T Consensus 173 g~~-~p~~---l~~~i~~~~IPVI~-G~V~t~e~A~~~~~aGaDgV~~G~ 217 (369)
T TIGR01304 173 TSG-EPLN---LKEFIGELDVPVIA-GGVNDYTTALHLMRTGAAGVIVGP 217 (369)
T ss_pred CCC-CHHH---HHHHHHHCCCCEEE-eCCCCHHHHHHHHHcCCCEEEECC
Confidence 111 2222 33444456799998 999999999999999999999774
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302. |
| >PRK06096 molybdenum transport protein ModD; Provisional | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.043 Score=55.77 Aligned_cols=91 Identities=10% Similarity=0.102 Sum_probs=68.0
Q ss_pred hHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHh--cCCCcEE
Q psy1056 357 YQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYAS--RRGVPVI 434 (590)
Q Consensus 357 ~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~--~~~v~ii 434 (590)
.+.+.++.+|+..|..++.+ ++.+.+++++++++|+|.|-+ +.+ +++.+.++.+..+ ..++.+-
T Consensus 175 ~i~~av~~~r~~~~~~kIeV-Ev~tleqa~ea~~agaDiI~L-----------Dn~--~~e~l~~av~~~~~~~~~~~le 240 (284)
T PRK06096 175 DWSGAINQLRRHAPEKKIVV-EADTPKEAIAALRAQPDVLQL-----------DKF--SPQQATEIAQIAPSLAPHCTLS 240 (284)
T ss_pred cHHHHHHHHHHhCCCCCEEE-ECCCHHHHHHHHHcCCCEEEE-----------CCC--CHHHHHHHHHHhhccCCCeEEE
Confidence 46678888898877666555 999999999999999999922 111 3344445544443 2357899
Q ss_pred ecCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 435 ADGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 435 a~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
++||| |...+..=-..|+|.+.+|.+.
T Consensus 241 aSGGI-~~~ni~~yA~tGvD~Is~gal~ 267 (284)
T PRK06096 241 LAGGI-NLNTLKNYADCGIRLFITSAPY 267 (284)
T ss_pred EECCC-CHHHHHHHHhcCCCEEEECccc
Confidence 99999 7888887778899999999864
|
|
| >COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.18 Score=48.60 Aligned_cols=125 Identities=18% Similarity=0.178 Sum_probs=78.0
Q ss_pred HHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEe--ccccCcHHHHHHHH-CCCCEEEEcccccccCCC
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIG--GNVLFGYQPRATLL-NFIYQIEMIKFIKKEYPD 408 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~--g~v~s~~~a~~l~~-~Gvd~i~v~~~~~~~~~~ 408 (590)
.-.++...++|+|.+.|-..-. ..-+...++..++. +..+.+ =++-+++++.+-.+ +|+|++.+ |.++.
T Consensus 70 ~~e~~ma~~aGAd~~tV~g~A~-~~TI~~~i~~A~~~--~~~v~iDl~~~~~~~~~~~~l~~~gvd~~~~--H~g~D--- 141 (217)
T COG0269 70 AIEARMAFEAGADWVTVLGAAD-DATIKKAIKVAKEY--GKEVQIDLIGVWDPEQRAKWLKELGVDQVIL--HRGRD--- 141 (217)
T ss_pred HHHHHHHHHcCCCEEEEEecCC-HHHHHHHHHHHHHc--CCeEEEEeecCCCHHHHHHHHHHhCCCEEEE--Eeccc---
Confidence 3467778899999998765432 22233444444443 444443 34556777665555 99999855 12211
Q ss_pred cccccc--chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCCC
Q psy1056 409 MQVIGR--NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTS 466 (590)
Q Consensus 409 ~~~~g~--~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~~ 466 (590)
..-.|. ....+..+.+.. ..++.+-..||| ++.++-.....|++.+.+|+.+.++.
T Consensus 142 ~q~~G~~~~~~~l~~ik~~~-~~g~~vAVaGGI-~~~~i~~~~~~~~~ivIvGraIt~a~ 199 (217)
T COG0269 142 AQAAGKSWGEDDLEKIKKLS-DLGAKVAVAGGI-TPEDIPLFKGIGADIVIVGRAITGAK 199 (217)
T ss_pred HhhcCCCccHHHHHHHHHhh-ccCceEEEecCC-CHHHHHHHhcCCCCEEEECchhcCCC
Confidence 111122 123344444443 235778889999 89999999999999999999996553
|
|
| >PRK08649 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.027 Score=59.61 Aligned_cols=61 Identities=20% Similarity=0.300 Sum_probs=52.9
Q ss_pred EeccccccccCCCCCCC-CccCCcccccccccccCCceeeCCCCCCchHHHHHHHHHcCCeeEec
Q psy1056 69 VTSRDVDFLENSANMDL-KIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAI 132 (590)
Q Consensus 69 vT~~Did~l~~~~~~~~-~~~~~~~~~l~~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~ 132 (590)
++++ |+++.|+++++ +++++++..+ ..+.++.|++.++|+.+++..++.+++..||+|++|
T Consensus 16 ~~fd--dV~lvp~~~~~~~~dvdls~~~-~~~~i~~Piv~a~M~gVt~~~la~avs~~GglGvl~ 77 (368)
T PRK08649 16 YGLD--EIAIVPSRRTRDPEDVSTSWQI-DAYRFEIPIIASPMDAVVSPETAIELGKLGGLGVLN 77 (368)
T ss_pred CCcc--eEEEeCCCCCCCHHHceeeeee-cceeccCcEeccCCcccCCHHHHHHHHhCCCceEEe
Confidence 5788 78888998887 7788888544 467789999999999999999999999999999987
|
|
| >PRK09016 quinolinate phosphoribosyltransferase; Validated | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.041 Score=56.07 Aligned_cols=89 Identities=12% Similarity=-0.012 Sum_probs=66.6
Q ss_pred HHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecC
Q psy1056 358 QIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADG 437 (590)
Q Consensus 358 ~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~G 437 (590)
+.+.++.+++..|..++.+ +|-|.+++.+++++|+|.|-+ -.. +++.+.++.+... .++.+.+||
T Consensus 195 i~~av~~~r~~~~~~kIeV-Ev~sleea~ea~~~gaDiI~L---Dn~----------s~e~~~~av~~~~-~~~~ieaSG 259 (296)
T PRK09016 195 IRQAVEKAFWLHPDVPVEV-EVENLDELDQALKAGADIIML---DNF----------TTEQMREAVKRTN-GRALLEVSG 259 (296)
T ss_pred HHHHHHHHHHhCCCCCEEE-EeCCHHHHHHHHHcCCCEEEe---CCC----------ChHHHHHHHHhhc-CCeEEEEEC
Confidence 4677888888887777655 999999999999999999922 111 2333444444333 258899999
Q ss_pred CCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 438 GVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 438 Gi~~~~di~kalalGA~~v~~g~~l 462 (590)
|| |...+..=-..|+|.+.+|.+.
T Consensus 260 GI-~~~ni~~yA~tGVD~Is~galt 283 (296)
T PRK09016 260 NV-TLETLREFAETGVDFISVGALT 283 (296)
T ss_pred CC-CHHHHHHHHhcCCCEEEeCccc
Confidence 99 7788887777899999999876
|
|
| >COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.15 Score=53.45 Aligned_cols=67 Identities=19% Similarity=0.236 Sum_probs=53.3
Q ss_pred HHHHHHHHHcCCcEEEEecCC--Cch------hhHHHHHHHHHHhCCCceEE-eccccCcHHHHHHHHCCCCEEEE
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQ--GNS------IYQIEMIKFIKKEYPDMQVI-GGNVLFGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~--G~~------~~~l~~i~~i~~~~~~vpvi-~g~v~s~~~a~~l~~~Gvd~i~v 398 (590)
...+....+.|+|.++....+ ||. .....++.++++.+..+||| +|.+.+.+++..+..+||+++.+
T Consensus 137 ~~~A~~~~~~G~d~vI~~g~eAGGH~g~~~~~~~t~~Lv~ev~~~~~~iPViAAGGI~dg~~i~AAlalGA~gVq~ 212 (336)
T COG2070 137 VREALKAERAGADAVIAQGAEAGGHRGGVDLEVSTFALVPEVVDAVDGIPVIAAGGIADGRGIAAALALGADGVQM 212 (336)
T ss_pred HHHHHHHHhCCCCEEEecCCcCCCcCCCCCCCccHHHHHHHHHHHhcCCCEEEecCccChHHHHHHHHhccHHHHh
Confidence 356677778899999887653 453 33578899999998338999 68888999999999999999944
|
|
| >PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.013 Score=60.86 Aligned_cols=136 Identities=27% Similarity=0.342 Sum_probs=116.2
Q ss_pred EeccccccccCCCCCCC--CccCCcccccccccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecC-C-----------
Q psy1056 69 VTSRDVDFLENSANMDL--KIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIG-T----------- 134 (590)
Q Consensus 69 vT~~Did~l~~~~~~~~--~~~~~~~~~l~~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~-~----------- 134 (590)
++++ |+++.|..... .+++++++.+. ...+..|++..+|++.....++...+..|+++++|+ +
T Consensus 5 l~Fd--dv~lv~~~lp~~s~~dvdlst~~~-~~~l~~P~~inAM~t~iN~~LA~~a~~~G~~~~~~k~~~e~~~~~~r~~ 81 (326)
T PRK05458 5 FDYE--DIQLIPNKCIVNSRSECDTSVTLG-PRTFKLPVVPANMQTIIDEKIAEWLAENGYFYIMHRFDPEARIPFIKDM 81 (326)
T ss_pred cCcc--ceEEecCCCCCCCHHHcccceEEC-CcEecCcEEEecccchhHHHHHHHHHHcCCEEEEecCCHHHHHHHHHhc
Confidence 6788 66666765544 47889999887 567889999999999999999999999999999999 1
Q ss_pred -------------CcchHHHHHHHHHcCC--cEEEEcCCCCchHHHHHHHHHhhhcCCCcccccccccchHHHHHHHHHh
Q psy1056 135 -------------READKYRLKLLSQAGV--DVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAG 199 (590)
Q Consensus 135 -------------~~d~~~~~~~l~~~~~--dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~im~~~~~~~~~~~~a~~~m 199 (590)
.+++.+++..|+++|+ |+|.+|.+|+|.....+.++++++.+|...+|.+++.+.+....+.+..
T Consensus 82 ~~~~l~v~~~vg~~~~~~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~aG 161 (326)
T PRK05458 82 HEQGLIASISVGVKDDEYDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELENAG 161 (326)
T ss_pred cccccEEEEEecCCHHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHHcC
Confidence 1236789999999954 9999999999999999999999998997779999998888888999999
Q ss_pred cccccccc
Q psy1056 200 VDGLRVGS 207 (590)
Q Consensus 200 ~~~~~v~~ 207 (590)
+|+++||+
T Consensus 162 ad~i~vg~ 169 (326)
T PRK05458 162 ADATKVGI 169 (326)
T ss_pred cCEEEECC
Confidence 99988874
|
|
| >PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2 | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.029 Score=52.68 Aligned_cols=91 Identities=18% Similarity=0.151 Sum_probs=64.3
Q ss_pred HHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHh--cCCCcEEe
Q psy1056 358 QIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYAS--RRGVPVIA 435 (590)
Q Consensus 358 ~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~--~~~v~iia 435 (590)
+.+.++.+++..|..+.|.=++-+.+++++++++|+|.|-+. + + +++.+.++.+.++ ...+.+.+
T Consensus 66 i~~av~~~~~~~~~~~~I~VEv~~~ee~~ea~~~g~d~I~lD---~--------~--~~~~~~~~v~~l~~~~~~v~ie~ 132 (169)
T PF01729_consen 66 IEEAVKAARQAAPEKKKIEVEVENLEEAEEALEAGADIIMLD---N--------M--SPEDLKEAVEELRELNPRVKIEA 132 (169)
T ss_dssp HHHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHTT-SEEEEE---S-----------CHHHHHHHHHHHHHHTTTSEEEE
T ss_pred HHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHhCCCEEEec---C--------c--CHHHHHHHHHHHhhcCCcEEEEE
Confidence 578888899988876534449999999999999999999331 1 1 2233334433221 22488999
Q ss_pred cCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 436 DGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 436 ~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
|||| |...+..=...|+|.+.+|++.
T Consensus 133 SGGI-~~~ni~~ya~~gvD~isvg~~~ 158 (169)
T PF01729_consen 133 SGGI-TLENIAEYAKTGVDVISVGSLT 158 (169)
T ss_dssp ESSS-STTTHHHHHHTT-SEEEECHHH
T ss_pred ECCC-CHHHHHHHHhcCCCEEEcChhh
Confidence 9999 7788888788999999999764
|
4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D .... |
| >PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: |
Back alignment and domain information |
|---|
Probab=96.08 E-value=0.1 Score=49.31 Aligned_cols=108 Identities=19% Similarity=0.148 Sum_probs=68.0
Q ss_pred HHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEE--ecc------c---cCcHHHHHHHHCCCCEEEEcccc
Q psy1056 334 RLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVI--GGN------V---LFGYQPRATLLNFIYQIEMIKFI 402 (590)
Q Consensus 334 ~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi--~g~------v---~s~~~a~~l~~~Gvd~i~v~~~~ 402 (590)
.+......|+..+-.+. .+.++.+++.. ++|+| .|. | .|.++++.+.++|+|.|-+. ++
T Consensus 4 mA~Aa~~gGA~giR~~~--------~~dI~aik~~v-~lPIIGi~K~~y~~~~V~ITPT~~ev~~l~~aGadIIAlD-aT 73 (192)
T PF04131_consen 4 MAKAAEEGGAVGIRANG--------VEDIRAIKKAV-DLPIIGIIKRDYPDSDVYITPTLKEVDALAEAGADIIALD-AT 73 (192)
T ss_dssp HHHHHHHCT-SEEEEES--------HHHHHHHHTTB--S-EEEE-B-SBTTSS--BS-SHHHHHHHHHCT-SEEEEE--S
T ss_pred HHHHHHHCCceEEEcCC--------HHHHHHHHHhc-CCCEEEEEeccCCCCCeEECCCHHHHHHHHHcCCCEEEEe-cC
Confidence 35566677888775532 56788888887 89988 342 1 18899999999999988443 33
Q ss_pred cccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccC
Q psy1056 403 KKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAG 464 (590)
Q Consensus 403 ~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~ 464 (590)
.|. -+..+.++....+....+++| -|.|-.|...|..+|+|.| |+-|.+
T Consensus 74 ~R~---------Rp~~l~~li~~i~~~~~l~MA--Dist~ee~~~A~~~G~D~I--~TTLsG 122 (192)
T PF04131_consen 74 DRP---------RPETLEELIREIKEKYQLVMA--DISTLEEAINAAELGFDII--GTTLSG 122 (192)
T ss_dssp SSS----------SS-HHHHHHHHHHCTSEEEE--E-SSHHHHHHHHHTT-SEE--E-TTTT
T ss_pred CCC---------CCcCHHHHHHHHHHhCcEEee--ecCCHHHHHHHHHcCCCEE--Eccccc
Confidence 443 224455554444444588999 5779999999999999998 444544
|
; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B. |
| >PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.023 Score=56.18 Aligned_cols=72 Identities=14% Similarity=0.105 Sum_probs=47.9
Q ss_pred HHHHHHHHCCCCEEEE-cccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcc
Q psy1056 383 YQPRATLLNFIYQIEM-IKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSL 461 (590)
Q Consensus 383 ~~a~~l~~~Gvd~i~v-~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~ 461 (590)
+.|+.+.+. ++.+.+ ....+. .|.+.....+.+++ +..++|++++|||++..|+.+.+.+||+.|.+|+.
T Consensus 34 ~~a~~~~~~-~~~l~ivDldga~-----~g~~~n~~~i~~i~---~~~~~pv~~gGGIrs~edv~~l~~~G~~~vivGta 104 (228)
T PRK04128 34 EIALRFSEY-VDKIHVVDLDGAF-----EGKPKNLDVVKNII---RETGLKVQVGGGLRTYESIKDAYEIGVENVIIGTK 104 (228)
T ss_pred HHHHHHHHh-CCEEEEEECcchh-----cCCcchHHHHHHHH---hhCCCCEEEcCCCCCHHHHHHHHHCCCCEEEECch
Confidence 445566665 777644 222111 11112333344443 34569999999999999999999999999999987
Q ss_pred cc
Q psy1056 462 LA 463 (590)
Q Consensus 462 l~ 463 (590)
..
T Consensus 105 a~ 106 (228)
T PRK04128 105 AF 106 (228)
T ss_pred hc
Confidence 65
|
|
| >PRK08999 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.061 Score=55.81 Aligned_cols=80 Identities=15% Similarity=0.014 Sum_probs=53.9
Q ss_pred EEeccccCcHHHHHHHHCCCCEEEEc-ccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcC
Q psy1056 374 VIGGNVLFGYQPRATLLNFIYQIEMI-KFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALG 452 (590)
Q Consensus 374 vi~g~v~s~~~a~~l~~~Gvd~i~v~-~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalG 452 (590)
++--.+-+.+++.++.+.|+||+-++ +..|..+++....| +..+.+.+...++|++|=||| +..++...++.|
T Consensus 228 ~ig~S~h~~~~~~~a~~~~~dyi~~gpvf~t~tk~~~~~~g-----~~~~~~~~~~~~~Pv~AiGGI-~~~~~~~~~~~g 301 (312)
T PRK08999 228 WVAASCHDAEELARAQRLGVDFAVLSPVQPTASHPGAAPLG-----WEGFAALIAGVPLPVYALGGL-GPGDLEEAREHG 301 (312)
T ss_pred EEEEecCCHHHHHHHHhcCCCEEEECCCcCCCCCCCCCCCC-----HHHHHHHHHhCCCCEEEECCC-CHHHHHHHHHhC
Confidence 44345678899999999999999773 22232221111122 222333344456999999999 999999999999
Q ss_pred CCEEEEC
Q psy1056 453 ASTAMMG 459 (590)
Q Consensus 453 A~~v~~g 459 (590)
|++|.+-
T Consensus 302 ~~gva~i 308 (312)
T PRK08999 302 AQGIAGI 308 (312)
T ss_pred CCEEEEE
Confidence 9999443
|
|
| >PRK05283 deoxyribose-phosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.092 Score=52.46 Aligned_cols=117 Identities=17% Similarity=0.075 Sum_probs=76.6
Q ss_pred HHHHHHHHcCCcEEEEec-----CCCchhhHHHHHHHHHHhCC---CceEEecccc-CcHH-----HHHHHHCCCCEEEE
Q psy1056 333 NRLKLLSQAGVDVVILDS-----SQGNSIYQIEMIKFIKKEYP---DMQVIGGNVL-FGYQ-----PRATLLNFIYQIEM 398 (590)
Q Consensus 333 e~~~~li~~gad~i~V~~-----~~G~~~~~l~~i~~i~~~~~---~vpvi~g~v~-s~~~-----a~~l~~~Gvd~i~v 398 (590)
..++..++.|++-+-+.. ..|+...+.+.++.+++... .+.||+-... +.++ .+.++++|||+|+-
T Consensus 87 ~Ea~~Ai~~GAdEiD~Vinig~lk~g~~~~v~~ei~~v~~~~~~~~~lKVIlEt~~L~~ee~i~~a~~~a~~aGADFVKT 166 (257)
T PRK05283 87 AETRAAIAYGADEVDVVFPYRALMAGNEQVGFELVKACKEACAANVLLKVIIETGELKDEALIRKASEIAIKAGADFIKT 166 (257)
T ss_pred HHHHHHHHcCCCEEeeeccHHHHhCCcHHHHHHHHHHHHHHhCCCceEEEEEeccccCCHHHHHHHHHHHHHhCCCEEEc
Confidence 456778888998765433 24666777778888887543 2455553221 4342 34577899999932
Q ss_pred cccccccCCCccccccchhHHHHHHHHHhc----CCCcEEecCCCCCHHHHHHHHHcCCCEE
Q psy1056 399 IKFIKKEYPDMQVIGRNGTAVYRVAEYASR----RGVPVIADGGVQSVGHVMKALALGASTA 456 (590)
Q Consensus 399 ~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~----~~v~iia~GGi~~~~di~kalalGA~~v 456 (590)
| - ||.+.|.++..+..+++..++ .++.|=|+|||||..++...+.+|.+..
T Consensus 167 S----T---Gf~~~gAt~edv~lm~~~i~~~~~~~~vgIKAsGGIrt~~~A~~~i~ag~~~l 221 (257)
T PRK05283 167 S----T---GKVPVNATLEAARIMLEVIRDMGVAKTVGFKPAGGVRTAEDAAQYLALADEIL 221 (257)
T ss_pred C----C---CCCCCCCCHHHHHHHHHHHHhcccCCCeeEEccCCCCCHHHHHHHHHHHHHHh
Confidence 1 1 133334467766666666532 2478999999999999999999987654
|
|
| >COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.17 Score=49.13 Aligned_cols=121 Identities=15% Similarity=0.181 Sum_probs=74.6
Q ss_pred HHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceE-EeccccCcHHHHHHHHCCCCEEEE-cccccccCCCc
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQV-IGGNVLFGYQPRATLLNFIYQIEM-IKFIKKEYPDM 409 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpv-i~g~v~s~~~a~~l~~~Gvd~i~v-~~~~~~~~~~~ 409 (590)
...++...++|++.+.++.- ........++++|+. ++.. ++=+-.|+-++..-.--=+|.|-+ |+..+ |
T Consensus 74 ~~~i~~fa~agad~It~H~E--~~~~~~r~i~~Ik~~--G~kaGv~lnP~Tp~~~i~~~l~~vD~VllMsVnPG-----f 144 (220)
T COG0036 74 DRYIEAFAKAGADIITFHAE--ATEHIHRTIQLIKEL--GVKAGLVLNPATPLEALEPVLDDVDLVLLMSVNPG-----F 144 (220)
T ss_pred HHHHHHHHHhCCCEEEEEec--cCcCHHHHHHHHHHc--CCeEEEEECCCCCHHHHHHHHhhCCEEEEEeECCC-----C
Confidence 46778899999999998875 233456677888876 3322 122444555554422233677754 54333 3
Q ss_pred cccccchhHHHH---HHHHHhcC-CCcEEecCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 410 QVIGRNGTAVYR---VAEYASRR-GVPVIADGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 410 ~~~g~~~~~l~~---~~~~~~~~-~v~iia~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
.|--..+.++.. +++...+. +.-|-.|||| +..-+-++.++|||.+++|+.+
T Consensus 145 gGQ~Fi~~~l~Ki~~lr~~~~~~~~~~IeVDGGI-~~~t~~~~~~AGad~~VaGSal 200 (220)
T COG0036 145 GGQKFIPEVLEKIRELRAMIDERLDILIEVDGGI-NLETIKQLAAAGADVFVAGSAL 200 (220)
T ss_pred cccccCHHHHHHHHHHHHHhcccCCeEEEEeCCc-CHHHHHHHHHcCCCEEEEEEEE
Confidence 322224444444 44444322 3457779999 5677878888999999999966
|
|
| >PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.024 Score=57.26 Aligned_cols=72 Identities=15% Similarity=0.119 Sum_probs=50.4
Q ss_pred HHHHHHHHCCCCEEEE-cccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcc
Q psy1056 383 YQPRATLLNFIYQIEM-IKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSL 461 (590)
Q Consensus 383 ~~a~~l~~~Gvd~i~v-~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~ 461 (590)
+.|+.+.+.|++.+.+ .+.... .+-|.....+ .+.+...++|++++|||++..|+.+.+.+||+.|.+|+.
T Consensus 34 ~~a~~~~~~g~~~l~i~Dl~~~~-----~~~~~n~~~i---~~i~~~~~~pv~~gGGi~s~~d~~~l~~~G~~~vvigs~ 105 (258)
T PRK01033 34 NAVRIFNEKEVDELIVLDIDASK-----RGSEPNYELI---ENLASECFMPLCYGGGIKTLEQAKKIFSLGVEKVSINTA 105 (258)
T ss_pred HHHHHHHHcCCCEEEEEECCCCc-----CCCcccHHHH---HHHHHhCCCCEEECCCCCCHHHHHHHHHCCCCEEEEChH
Confidence 5578888999998855 211110 1111133333 334444579999999999999999999999999999976
Q ss_pred c
Q psy1056 462 L 462 (590)
Q Consensus 462 l 462 (590)
+
T Consensus 106 ~ 106 (258)
T PRK01033 106 A 106 (258)
T ss_pred H
Confidence 5
|
|
| >PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.066 Score=54.28 Aligned_cols=90 Identities=17% Similarity=0.088 Sum_probs=67.0
Q ss_pred hHHHHHHHHHHhCCC-ceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEe
Q psy1056 357 YQIEMIKFIKKEYPD-MQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIA 435 (590)
Q Consensus 357 ~~l~~i~~i~~~~~~-vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia 435 (590)
.+.+.++.+|+..|. .++.+ ||-|.+++..++++|+|.|-+ -. + +++.+.++....+. ...+.+
T Consensus 178 ~i~~av~~~r~~~~~~~kIeV-Ev~slee~~ea~~~gaDiImL---Dn-----~-----s~e~l~~av~~~~~-~~~lea 242 (281)
T PRK06543 178 DLTEALRHVRAQLGHTTHVEV-EVDRLDQIEPVLAAGVDTIML---DN-----F-----SLDDLREGVELVDG-RAIVEA 242 (281)
T ss_pred HHHHHHHHHHHhCCCCCcEEE-EeCCHHHHHHHHhcCCCEEEE---CC-----C-----CHHHHHHHHHHhCC-CeEEEE
Confidence 467889999998863 55555 999999999999999999922 11 1 33344444444432 367999
Q ss_pred cCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 436 DGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 436 ~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
|||| |...+..=-..|+|.+.+|.+.
T Consensus 243 SGgI-~~~ni~~yA~tGVD~Is~galt 268 (281)
T PRK06543 243 SGNV-NLNTVGAIASTGVDVISVGALT 268 (281)
T ss_pred ECCC-CHHHHHHHHhcCCCEEEeCccc
Confidence 9999 7888877777899999999866
|
|
| >KOG1606|consensus | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.025 Score=53.58 Aligned_cols=38 Identities=18% Similarity=0.068 Sum_probs=32.4
Q ss_pred HHHHHHHHHhCCCceEEec-cccCcHHHHHHHHCCCCEEE
Q psy1056 359 IEMIKFIKKEYPDMQVIGG-NVLFGYQPRATLLNFIYQIE 397 (590)
Q Consensus 359 l~~i~~i~~~~~~vpvi~g-~v~s~~~a~~l~~~Gvd~i~ 397 (590)
..+|++++... .+|++++ -++..-+|+.|...|+||||
T Consensus 67 P~mIKei~~aV-siPVMAk~RiGHFVEAQIlE~l~vDYiD 105 (296)
T KOG1606|consen 67 PRMIKEIKNAV-SIPVMAKVRIGHFVEAQILEALGVDYID 105 (296)
T ss_pred HHHHHHHHHhc-cchhhhhhhhhhhhHHHHHHHhccCccc
Confidence 47888998887 7899976 56688899999999999998
|
|
| >PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.079 Score=58.87 Aligned_cols=96 Identities=19% Similarity=0.169 Sum_probs=62.3
Q ss_pred HHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEc-ccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCH
Q psy1056 364 FIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMI-KFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSV 442 (590)
Q Consensus 364 ~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~-~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~ 442 (590)
..++.++.-.++--.+.+.+++.++.+.|+|||.++ +..+..+++....| +..++.++...++|++|-||| ++
T Consensus 382 ~~r~~~~~~~~iG~S~h~~~e~~~a~~~gadyi~~gpif~t~tk~~~~~~g-----~~~~~~~~~~~~~Pv~aiGGI-~~ 455 (502)
T PLN02898 382 LARSLLGPGKIIGVSCKTPEQAEQAWKDGADYIGCGGVFPTNTKANNKTIG-----LDGLREVCEASKLPVVAIGGI-SA 455 (502)
T ss_pred HHHHhcCCCCEEEEeCCCHHHHHHHhhcCCCEEEECCeecCCCCCCCCCCC-----HHHHHHHHHcCCCCEEEECCC-CH
Confidence 344444222344346679999999999999999762 22222211111112 222333333456999999999 69
Q ss_pred HHHHHHHHcCCC---EEEECccccCC
Q psy1056 443 GHVMKALALGAS---TAMMGSLLAGT 465 (590)
Q Consensus 443 ~di~kalalGA~---~v~~g~~l~~~ 465 (590)
.++...++.||+ +|.+++.+..+
T Consensus 456 ~~~~~~~~~G~~~~~gvav~~~i~~~ 481 (502)
T PLN02898 456 SNAASVMESGAPNLKGVAVVSALFDQ 481 (502)
T ss_pred HHHHHHHHcCCCcCceEEEEeHHhcC
Confidence 999999999999 99999888543
|
|
| >PRK06806 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.22 Score=50.81 Aligned_cols=125 Identities=14% Similarity=0.089 Sum_probs=82.4
Q ss_pred HHHHHHHHHcCCcEEEEecCCCchhhHH---HHHHHHHHhCCCceEE-----ec-----------cccCcHHHHHHHH-C
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGNSIYQI---EMIKFIKKEYPDMQVI-----GG-----------NVLFGYQPRATLL-N 391 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~~~~~l---~~i~~i~~~~~~vpvi-----~g-----------~v~s~~~a~~l~~-~ 391 (590)
.+.+...++.|++.+.++.++-..+..+ ..+..+...+ ++++= +| .+.++++|+++.+ .
T Consensus 87 ~e~i~~Al~~G~tsVm~d~s~~~~~eni~~t~~v~~~a~~~-gv~veaE~ghlG~~d~~~~~~g~s~t~~eea~~f~~~t 165 (281)
T PRK06806 87 FEKIKEALEIGFTSVMFDGSHLPLEENIQKTKEIVELAKQY-GATVEAEIGRVGGSEDGSEDIEMLLTSTTEAKRFAEET 165 (281)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHc-CCeEEEEeeeECCccCCcccccceeCCHHHHHHHHHhh
Confidence 4667778888999999988765443322 3344444444 44432 22 1348899999875 6
Q ss_pred CCCEEEEcccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecC--CCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 392 FIYQIEMIKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADG--GVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 392 Gvd~i~v~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~G--Gi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
|+|++-+++.+.... ..+... ....|.++.+ ..++|+++=| || +..++.+++..|++.+-+.+.+.
T Consensus 166 g~DyLAvaiG~~hg~--~~~~~~l~~~~L~~i~~---~~~iPlV~hG~SGI-~~e~~~~~i~~G~~kinv~T~i~ 234 (281)
T PRK06806 166 DVDALAVAIGNAHGM--YNGDPNLRFDRLQEIND---VVHIPLVLHGGSGI-SPEDFKKCIQHGIRKINVATATF 234 (281)
T ss_pred CCCEEEEccCCCCCC--CCCCCccCHHHHHHHHH---hcCCCEEEECCCCC-CHHHHHHHHHcCCcEEEEhHHHH
Confidence 999997755443320 111122 4444555544 3469999999 88 78899999999999999998774
|
|
| >PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.064 Score=54.43 Aligned_cols=89 Identities=12% Similarity=-0.014 Sum_probs=66.2
Q ss_pred HHHHHHHHHHhCCC-ceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEec
Q psy1056 358 QIEMIKFIKKEYPD-MQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIAD 436 (590)
Q Consensus 358 ~l~~i~~i~~~~~~-vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~ 436 (590)
+.+.++.+|+..|. .++.+ +|.|.+++.+++++|+|.|-+. .. +++.+.++.+... ...++-+|
T Consensus 180 i~~ai~~~r~~~~~~~kIeV-Ev~tleea~ea~~~gaDiI~LD---n~----------s~e~l~~av~~~~-~~~~leaS 244 (281)
T PRK06106 180 VREAIRRARAGVGHLVKIEV-EVDTLDQLEEALELGVDAVLLD---NM----------TPDTLREAVAIVA-GRAITEAS 244 (281)
T ss_pred HHHHHHHHHHhCCCCCcEEE-EeCCHHHHHHHHHcCCCEEEeC---CC----------CHHHHHHHHHHhC-CCceEEEE
Confidence 56788889988863 44444 9999999999999999999221 11 3334445544443 24789999
Q ss_pred CCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 437 GGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 437 GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
||| |...+..=-+.|+|.+.+|.+.
T Consensus 245 GGI-~~~ni~~yA~tGVD~Is~Galt 269 (281)
T PRK06106 245 GRI-TPETAPAIAASGVDLISVGWLT 269 (281)
T ss_pred CCC-CHHHHHHHHhcCCCEEEeChhh
Confidence 999 7788887778899999999866
|
|
| >cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.055 Score=54.25 Aligned_cols=81 Identities=15% Similarity=0.142 Sum_probs=61.8
Q ss_pred HHHHHHHHHhCCCceEEec-cccCcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHH-hcCCCcEEec
Q psy1056 359 IEMIKFIKKEYPDMQVIGG-NVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYA-SRRGVPVIAD 436 (590)
Q Consensus 359 l~~i~~i~~~~~~vpvi~g-~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~-~~~~v~iia~ 436 (590)
.+.|+.+++.. ++|||.. -.....+++.|.++|+|+|+ ++.|. ++ +.++.... .++++|++|
T Consensus 54 ~~~I~~Ik~~V-~iPVIGi~K~~~~~Ea~~L~eaGvDiID---aT~r~---------rP--~~~~~~~iK~~~~~l~MA- 117 (283)
T cd04727 54 PKMIKEIMDAV-SIPVMAKVRIGHFVEAQILEALGVDMID---ESEVL---------TP--ADEEHHIDKHKFKVPFVC- 117 (283)
T ss_pred HHHHHHHHHhC-CCCeEEeeehhHHHHHHHHHHcCCCEEe---ccCCC---------Cc--HHHHHHHHHHHcCCcEEc-
Confidence 68899999988 8999943 34458999999999999994 55554 22 12222222 234799999
Q ss_pred CCCCCHHHHHHHHHcCCCEE
Q psy1056 437 GGVQSVGHVMKALALGASTA 456 (590)
Q Consensus 437 GGi~~~~di~kalalGA~~v 456 (590)
+++|-.+...|..+|||.+
T Consensus 118 -D~stleEal~a~~~Gad~I 136 (283)
T cd04727 118 -GARNLGEALRRISEGAAMI 136 (283)
T ss_pred -cCCCHHHHHHHHHCCCCEE
Confidence 9999999999999999988
|
Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings. |
| >PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.04 Score=54.73 Aligned_cols=74 Identities=12% Similarity=0.088 Sum_probs=51.6
Q ss_pred cHHHHHHHH-CCCCEEEE-cccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEEC
Q psy1056 382 GYQPRATLL-NFIYQIEM-IKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMG 459 (590)
Q Consensus 382 ~~~a~~l~~-~Gvd~i~v-~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g 459 (590)
.+.|+.+.+ .|+|.+-+ ....... +.......+.++. +..++|+..+||||+-.|+.+.+.+||+.|.+|
T Consensus 34 ~~~a~~~~~~~Ga~~l~ivDLd~a~~-----~~~~n~~~I~~i~---~~~~~pi~vGGGIrs~e~v~~~l~~Ga~kvvig 105 (234)
T PRK13587 34 EESIAYYSQFECVNRIHIVDLIGAKA-----QHAREFDYIKSLR---RLTTKDIEVGGGIRTKSQIMDYFAAGINYCIVG 105 (234)
T ss_pred HHHHHHHHhccCCCEEEEEECccccc-----CCcchHHHHHHHH---hhcCCeEEEcCCcCCHHHHHHHHHCCCCEEEEC
Confidence 367777888 69998865 2211111 1111333344444 445689999999999999999999999999999
Q ss_pred cccc
Q psy1056 460 SLLA 463 (590)
Q Consensus 460 ~~l~ 463 (590)
+...
T Consensus 106 t~a~ 109 (234)
T PRK13587 106 TKGI 109 (234)
T ss_pred chHh
Confidence 8654
|
|
| >PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5 | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.032 Score=53.94 Aligned_cols=121 Identities=13% Similarity=0.097 Sum_probs=72.4
Q ss_pred HHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEE-cccccccCCCccc
Q psy1056 333 NRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEM-IKFIKKEYPDMQV 411 (590)
Q Consensus 333 e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v-~~~~~~~~~~~~~ 411 (590)
..++.+.++|++.+.++... .....+.++.+|+.--..-+.+.--...+....+++ -+|.|-+ +++.+ +.|
T Consensus 71 ~~i~~~~~~g~~~i~~H~E~--~~~~~~~i~~ik~~g~k~GialnP~T~~~~~~~~l~-~vD~VlvMsV~PG-----~~G 142 (201)
T PF00834_consen 71 RYIEEFAEAGADYITFHAEA--TEDPKETIKYIKEAGIKAGIALNPETPVEELEPYLD-QVDMVLVMSVEPG-----FGG 142 (201)
T ss_dssp GHHHHHHHHT-SEEEEEGGG--TTTHHHHHHHHHHTTSEEEEEE-TTS-GGGGTTTGC-CSSEEEEESS-TT-----TSS
T ss_pred HHHHHHHhcCCCEEEEcccc--hhCHHHHHHHHHHhCCCEEEEEECCCCchHHHHHhh-hcCEEEEEEecCC-----CCc
Confidence 46777899999999887752 233567788888763222233333334455555555 3788755 54433 444
Q ss_pred cccchhH---HHHHHHHHhc--CCCcEEecCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 412 IGRNGTA---VYRVAEYASR--RGVPVIADGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 412 ~g~~~~~---l~~~~~~~~~--~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
....... +.++++...+ .++.|..||||+. ..+.++.++|||.+++|+.+
T Consensus 143 q~f~~~~~~KI~~l~~~~~~~~~~~~I~vDGGI~~-~~~~~~~~aGad~~V~Gs~i 197 (201)
T PF00834_consen 143 QKFIPEVLEKIRELRKLIPENGLDFEIEVDGGINE-ENIKQLVEAGADIFVAGSAI 197 (201)
T ss_dssp B--HGGHHHHHHHHHHHHHHHTCGSEEEEESSEST-TTHHHHHHHT--EEEESHHH
T ss_pred ccccHHHHHHHHHHHHHHHhcCCceEEEEECCCCH-HHHHHHHHcCCCEEEECHHH
Confidence 3333333 4445544433 3588999999954 56888889999999999876
|
1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D .... |
| >TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.26 Score=50.36 Aligned_cols=124 Identities=13% Similarity=0.099 Sum_probs=81.5
Q ss_pred HHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHH---HhCCCceEE--ec--------------cccCcHHHHHHHH-C
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIK---KEYPDMQVI--GG--------------NVLFGYQPRATLL-N 391 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~---~~~~~vpvi--~g--------------~v~s~~~a~~l~~-~ 391 (590)
.+.+...++.|++.+.++.++-.....++..+++. ..+ ++++= +| ...++++|+++.+ .
T Consensus 87 ~e~i~~ai~~Gf~sVmid~s~l~~~eni~~t~~v~~~a~~~-gv~Ve~ElG~~gg~ed~~~g~~~~~t~~eea~~f~~~t 165 (282)
T TIGR01859 87 YESCIKAIKAGFSSVMIDGSHLPFEENLALTKKVVEIAHAK-GVSVEAELGTLGGIEDGVDEKEAELADPDEAEQFVKET 165 (282)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHc-CCEEEEeeCCCcCccccccccccccCCHHHHHHHHHHH
Confidence 45666778889999998887654433333333332 333 34332 11 1338999999997 9
Q ss_pred CCCEEEEcccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecC--CCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 392 FIYQIEMIKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADG--GVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 392 Gvd~i~v~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~G--Gi~~~~di~kalalGA~~v~~g~~l 462 (590)
|+|++-+++.+.+. -+.+.+. ....|.++.+. .++|+++=| || +..++.+++..|++.+-+++-+
T Consensus 166 gvD~Lavs~Gt~hg--~~~~~~~l~~e~L~~i~~~---~~iPlv~hGgSGi-~~e~i~~~i~~Gi~kiNv~T~l 233 (282)
T TIGR01859 166 GVDYLAAAIGTSHG--KYKGEPGLDFERLKEIKEL---TNIPLVLHGASGI-PEEQIKKAIKLGIAKINIDTDC 233 (282)
T ss_pred CcCEEeeccCcccc--ccCCCCccCHHHHHHHHHH---hCCCEEEECCCCC-CHHHHHHHHHcCCCEEEECcHH
Confidence 99999766554331 0223232 44455555443 469999999 88 5688999999999999999887
|
This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase. |
| >cd02812 PcrB_like PcrB_like proteins | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.032 Score=54.52 Aligned_cols=34 Identities=26% Similarity=0.531 Sum_probs=32.2
Q ss_pred CCcEEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 430 GVPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 430 ~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
++|++..||||++.++.+++.+|||.|++|+.+-
T Consensus 175 ~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGsai~ 208 (219)
T cd02812 175 DTPLIVGGGIRSGEQAKEMAEAGADTIVVGNIVE 208 (219)
T ss_pred CCCEEEeCCCCCHHHHHHHHHcCCCEEEECchhh
Confidence 6899999999999999999999999999999883
|
One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.024 Score=60.84 Aligned_cols=48 Identities=21% Similarity=0.142 Sum_probs=39.1
Q ss_pred CccccCCE---EECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 23 HGFIRDPV---CIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 23 ~~m~~~~v---tv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
++|.+.+. ...++.+..+|+..|..++...+.|+|++ ++++|+++.++
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~~~~~~ 328 (400)
T PRK10070 278 DIARRTPNGLIRKTPGFGPRSALKLLQDEDREYGYVIERG---NKFVGAVSIDS 328 (400)
T ss_pred hhhhcCcccccccCCCCCHHHHHHHHHhcCCceEEEEcCC---CcEEEEEeHHH
Confidence 44544332 34477799999999999999999999987 89999999993
|
|
| >PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.13 Score=51.49 Aligned_cols=174 Identities=16% Similarity=0.160 Sum_probs=95.0
Q ss_pred HHHHHhcCCCcceEEcCCCceEEEEeecccccccCCCCC-CcccCCceEEeEeeccchhHHHHHHHHHHcCCcEEEEec-
Q psy1056 273 NVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDS-SKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVVILDS- 350 (590)
Q Consensus 273 ~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~~~~-~~d~~~~l~v~a~i~~~~~~~e~~~~li~~gad~i~V~~- 350 (590)
.+.+.+.+++.+.|-|..+.+.---...........-.. .+... .+.++.++... +..+.+......|++++-++.
T Consensus 35 a~~l~~~GvDgiiveN~~D~Py~~~~~~etvaaM~~i~~~v~~~~-~~p~GVnvL~n-d~~aalaiA~A~ga~FIRv~~~ 112 (254)
T PF03437_consen 35 AEALEEGGVDGIIVENMGDVPYPKRVGPETVAAMARIAREVRREV-SVPVGVNVLRN-DPKAALAIAAATGADFIRVNVF 112 (254)
T ss_pred HHHHHHCCCCEEEEecCCCCCccCCCCHHHHHHHHHHHHHHHHhC-CCCEEeeeecC-CCHHHHHHHHHhCCCEEEecCE
Confidence 456889999999998865543210000011111000000 01111 23456666432 234445555667999987653
Q ss_pred ------CCCchhhHHHHHHHHHHhC-CCceEEecccc-----------CcHHHHHH-HHCCCCEEEEcccccccCCCccc
Q psy1056 351 ------SQGNSIYQIEMIKFIKKEY-PDMQVIGGNVL-----------FGYQPRAT-LLNFIYQIEMIKFIKKEYPDMQV 411 (590)
Q Consensus 351 ------~~G~~~~~l~~i~~i~~~~-~~vpvi~g~v~-----------s~~~a~~l-~~~Gvd~i~v~~~~~~~~~~~~~ 411 (590)
.+|..+.....+-.+|+.. .++.+.+ +|. -.+.++.+ ...++|++.|+-..|
T Consensus 113 ~g~~~~d~G~~~~~a~e~~r~R~~l~a~v~ila-DV~~kh~~~l~~~~~~~~~~~a~~~~~aDaviVtG~~T-------- 183 (254)
T PF03437_consen 113 VGAYVTDEGIIEGCAGELLRYRKRLGADVKILA-DVHVKHSSPLATRDLEEAAKDAVERGGADAVIVTGKAT-------- 183 (254)
T ss_pred EceecccCccccccHHHHHHHHHHcCCCeEEEe-eechhhcccCCCCCHHHHHHHHHHhcCCCEEEECCccc--------
Confidence 3344444334444455544 2344442 222 23444444 468999995542222
Q ss_pred ccc--chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 412 IGR--NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 412 ~g~--~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
|. ..+-+.++++. .++||+..+|+ |+.-+.+-|.. ||++.+|+.|.
T Consensus 184 -G~~~~~~~l~~vr~~---~~~PVlvGSGv-t~~Ni~~~l~~-ADG~IVGS~~K 231 (254)
T PF03437_consen 184 -GEPPDPEKLKRVREA---VPVPVLVGSGV-TPENIAEYLSY-ADGAIVGSYFK 231 (254)
T ss_pred -CCCCCHHHHHHHHhc---CCCCEEEecCC-CHHHHHHHHHh-CCEEEEeeeee
Confidence 22 33334444443 34999999998 88889888866 99999999883
|
It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions. |
| >TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.039 Score=54.60 Aligned_cols=74 Identities=20% Similarity=0.170 Sum_probs=52.3
Q ss_pred cHHHHHHHHCCCCEEEE-cccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECc
Q psy1056 382 GYQPRATLLNFIYQIEM-IKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGS 460 (590)
Q Consensus 382 ~~~a~~l~~~Gvd~i~v-~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~ 460 (590)
.+.|+.+.+.|++.+.| ..... +.+.+.....+.++++ ..++|+..+|||++..|+.+++.+||+.|++|+
T Consensus 31 ~~~a~~~~~~g~~~l~v~dl~~~-----~~g~~~~~~~i~~i~~---~~~~pi~~ggGI~~~ed~~~~~~~Ga~~vvlgs 102 (230)
T TIGR00007 31 VEAAKKWEEEGAERIHVVDLDGA-----KEGGPVNLPVIKKIVR---ETGVPVQVGGGIRSLEDVEKLLDLGVDRVIIGT 102 (230)
T ss_pred HHHHHHHHHcCCCEEEEEeCCcc-----ccCCCCcHHHHHHHHH---hcCCCEEEeCCcCCHHHHHHHHHcCCCEEEECh
Confidence 45677788899998865 22211 1122223344444443 346899999999999999999999999999997
Q ss_pred ccc
Q psy1056 461 LLA 463 (590)
Q Consensus 461 ~l~ 463 (590)
.+.
T Consensus 103 ~~l 105 (230)
T TIGR00007 103 AAV 105 (230)
T ss_pred HHh
Confidence 664
|
Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317). |
| >cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.041 Score=54.68 Aligned_cols=73 Identities=21% Similarity=0.108 Sum_probs=51.7
Q ss_pred cHHHHHHHHCCCCEEEE-cccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECc
Q psy1056 382 GYQPRATLLNFIYQIEM-IKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGS 460 (590)
Q Consensus 382 ~~~a~~l~~~Gvd~i~v-~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~ 460 (590)
.+.|+.+.+.|+|.+-+ ...... +.+.....+..+ ++...+|+..+||||+..|+.+.|.+||+.|.+|+
T Consensus 38 ~~~a~~~~~~g~~~l~i~DLd~~~------~~~~n~~~i~~i---~~~~~~~v~vgGGir~~edv~~~l~~Ga~~viigt 108 (233)
T cd04723 38 LDVARAYKELGFRGLYIADLDAIM------GRGDNDEAIREL---AAAWPLGLWVDGGIRSLENAQEWLKRGASRVIVGT 108 (233)
T ss_pred HHHHHHHHHCCCCEEEEEeCcccc------CCCccHHHHHHH---HHhCCCCEEEecCcCCHHHHHHHHHcCCCeEEEcc
Confidence 46788888899998865 111110 111133334333 33446899999999999999999999999999997
Q ss_pred ccc
Q psy1056 461 LLA 463 (590)
Q Consensus 461 ~l~ 463 (590)
...
T Consensus 109 ~~~ 111 (233)
T cd04723 109 ETL 111 (233)
T ss_pred eec
Confidence 653
|
The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl |
| >TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.23 Score=48.49 Aligned_cols=122 Identities=20% Similarity=0.197 Sum_probs=85.0
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCC
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPD 408 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~ 408 (590)
+...+.+..+.+..-+ +.|-.+- ...| ++.++.+++. ++++-+--|-|.++|..+.++|+++| ++..+|
T Consensus 64 ~~mi~~a~~l~~~~~~-i~iKIP~-T~~G-l~A~~~L~~~--Gi~v~~T~vfs~~Qa~~Aa~aGa~yi--spyvgR---- 132 (213)
T TIGR00875 64 EGMVEEAKELAKLAPN-IVVKIPM-TSEG-LKAVKILKKE--GIKTNVTLVFSAAQALLAAKAGATYV--SPFVGR---- 132 (213)
T ss_pred HHHHHHHHHHHHhCCC-eEEEeCC-CHHH-HHHHHHHHHC--CCceeEEEecCHHHHHHHHHcCCCEE--Eeecch----
Confidence 3445566666666434 4443321 1123 6778888776 78887777889999999999999988 444444
Q ss_pred cccccc-chhHHHHHHHHHhcC--CCcEEecCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 409 MQVIGR-NGTAVYRVAEYASRR--GVPVIADGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 409 ~~~~g~-~~~~l~~~~~~~~~~--~v~iia~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
..+||. ....+.++.+..+.. +..|++ ..+|+..++..+..+|||.+-++..+
T Consensus 133 i~d~g~dg~~~v~~~~~~~~~~~~~tkIla-AS~r~~~~v~~~~~~G~d~vTip~~v 188 (213)
T TIGR00875 133 LDDIGGDGMKLIEEVKTIFENHAPDTEVIA-ASVRHPRHVLEAALIGADIATMPLDV 188 (213)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCCCEEEE-eccCCHHHHHHHHHcCCCEEEcCHHH
Confidence 345666 666666777666544 355554 68999999999999999999888655
|
This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth. |
| >KOG3111|consensus | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.23 Score=46.72 Aligned_cols=124 Identities=13% Similarity=0.038 Sum_probs=81.1
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEE-cccccccCCCc
Q psy1056 331 DKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEM-IKFIKKEYPDM 409 (590)
Q Consensus 331 ~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v-~~~~~~~~~~~ 409 (590)
-.+.++.+.++|++.+.++...-+ ...+.++.+++.--.+-+.++-..+.+++..+.+ -+|.+-| +++.+ |
T Consensus 76 Peq~V~~~a~agas~~tfH~E~~q--~~~~lv~~ir~~Gmk~G~alkPgT~Ve~~~~~~~-~~D~vLvMtVePG-----F 147 (224)
T KOG3111|consen 76 PEQWVDQMAKAGASLFTFHYEATQ--KPAELVEKIREKGMKVGLALKPGTPVEDLEPLAE-HVDMVLVMTVEPG-----F 147 (224)
T ss_pred HHHHHHHHHhcCcceEEEEEeecc--CHHHHHHHHHHcCCeeeEEeCCCCcHHHHHHhhc-cccEEEEEEecCC-----C
Confidence 356788899999999888764321 1567788888873223334555666777776654 3565543 55443 3
Q ss_pred cccccchhHHHHHHHHHhcCCCcEE-ecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 410 QVIGRNGTAVYRVAEYASRRGVPVI-ADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 410 ~~~g~~~~~l~~~~~~~~~~~v~ii-a~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
.|--...+.+..+.....++.-+-| .|||+ ++..|-||..+||++.+.|+..-
T Consensus 148 GGQkFme~mm~KV~~lR~kyp~l~ievDGGv-~~~ti~~~a~AGAN~iVaGsavf 201 (224)
T KOG3111|consen 148 GGQKFMEDMMPKVEWLREKYPNLDIEVDGGV-GPSTIDKAAEAGANMIVAGSAVF 201 (224)
T ss_pred chhhhHHHHHHHHHHHHHhCCCceEEecCCc-CcchHHHHHHcCCCEEEecceee
Confidence 2222255566655555445443444 89998 67889999999999999998773
|
|
| >TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.035 Score=55.01 Aligned_cols=74 Identities=15% Similarity=0.050 Sum_probs=50.9
Q ss_pred cHHHHHHHHCCCCEEEE-cccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECc
Q psy1056 382 GYQPRATLLNFIYQIEM-IKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGS 460 (590)
Q Consensus 382 ~~~a~~l~~~Gvd~i~v-~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~ 460 (590)
.+.|+.+.+.|++.+.+ .+.. . .++-|.....+..++ +..++|++++|||++..|+.+++.+||+.|++|+
T Consensus 33 ~~~a~~~~~~g~~~i~i~dl~~--~---~~~~~~n~~~~~~i~---~~~~~pv~~~ggi~~~~d~~~~~~~G~~~vilg~ 104 (232)
T TIGR03572 33 VNAARIYNAKGADELIVLDIDA--S---KRGREPLFELISNLA---EECFMPLTVGGGIRSLEDAKKLLSLGADKVSINT 104 (232)
T ss_pred HHHHHHHHHcCCCEEEEEeCCC--c---ccCCCCCHHHHHHHH---HhCCCCEEEECCCCCHHHHHHHHHcCCCEEEECh
Confidence 35567777899997754 1111 1 111122333333443 3456899999999999999999999999999997
Q ss_pred ccc
Q psy1056 461 LLA 463 (590)
Q Consensus 461 ~l~ 463 (590)
.+.
T Consensus 105 ~~l 107 (232)
T TIGR03572 105 AAL 107 (232)
T ss_pred hHh
Confidence 764
|
This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr |
| >PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.13 Score=55.16 Aligned_cols=88 Identities=14% Similarity=0.087 Sum_probs=57.7
Q ss_pred EEeccccCcHHHHHHHHCCCCEEEE-cccccccCC-CccccccchhHHHHHHHHHh------cCCCcEEecCCCCCHHHH
Q psy1056 374 VIGGNVLFGYQPRATLLNFIYQIEM-IKFIKKEYP-DMQVIGRNGTAVYRVAEYAS------RRGVPVIADGGVQSVGHV 445 (590)
Q Consensus 374 vi~g~v~s~~~a~~l~~~Gvd~i~v-~~~~~~~~~-~~~~~g~~~~~l~~~~~~~~------~~~v~iia~GGi~~~~di 445 (590)
++--.+-+.+++.++.+.|+|||-+ .+..|..+. .....|+ ..+..+.+.+. ..++|++|=||| +..++
T Consensus 302 iIGvStHs~eEl~~A~~~gaDYI~lGPIFpT~TK~~~~~p~Gl--~~L~~~~~l~~~~~~~~~~~iPVVAIGGI-~~~Ni 378 (437)
T PRK12290 302 RLGLSTHGYYELLRIVQIQPSYIALGHIFPTTTKQMPSKPQGL--VRLALYQKLIDTIPYQGQTGFPTVAIGGI-DQSNA 378 (437)
T ss_pred EEEEecCCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCH--HHHHHHHHHhhhccccccCCCCEEEECCc-CHHHH
Confidence 3333556899999999999999976 233232221 1222333 22333333332 136999999999 89999
Q ss_pred HHHHHcCCCEEEECccccC
Q psy1056 446 MKALALGASTAMMGSLLAG 464 (590)
Q Consensus 446 ~kalalGA~~v~~g~~l~~ 464 (590)
..+++.||++|.+=+.+..
T Consensus 379 ~~vl~aGa~GVAVVSAI~~ 397 (437)
T PRK12290 379 EQVWQCGVSSLAVVRAITL 397 (437)
T ss_pred HHHHHcCCCEEEEehHhhc
Confidence 9999999999966666643
|
|
| >PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating) | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.13 Score=52.66 Aligned_cols=93 Identities=13% Similarity=0.040 Sum_probs=63.2
Q ss_pred HHHHHHHHHHh---C-CCceEEeccccCcHHHHHHHH------CCCCEEEEcc-----cccccCCCccccccchhHHHHH
Q psy1056 358 QIEMIKFIKKE---Y-PDMQVIGGNVLFGYQPRATLL------NFIYQIEMIK-----FIKKEYPDMQVIGRNGTAVYRV 422 (590)
Q Consensus 358 ~l~~i~~i~~~---~-~~vpvi~g~v~s~~~a~~l~~------~Gvd~i~v~~-----~~~~~~~~~~~~g~~~~~l~~~ 422 (590)
+.+.++.+++. . +..++. -+|.|.++++.+++ +|+|.|-+.. +..++ +++.+.++
T Consensus 186 i~~av~~~r~~~~~~~~~~kIe-VEv~tleea~ea~~~~~~~~agaDiImLDnm~~~~~~~~~---------~~e~l~~a 255 (308)
T PLN02716 186 ITNAVQSADKYLEEKGLSMKIE-VETRTLEEVKEVLEYLSDTKTSLTRVMLDNMVVPLENGDV---------DVSMLKEA 255 (308)
T ss_pred HHHHHHHHHHhhhhcCCCeeEE-EEECCHHHHHHHHHhcccccCCCCEEEeCCCcccccccCC---------CHHHHHHH
Confidence 34556666652 2 224444 49999999999999 9999994311 11111 45555555
Q ss_pred HHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 423 AEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 423 ~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
.+.... ..|+-+|||| |...+..=-..|+|.+.+|.+.
T Consensus 256 v~~~~~-~~~lEaSGGI-t~~ni~~yA~tGVD~Is~Galt 293 (308)
T PLN02716 256 VELING-RFETEASGNV-TLDTVHKIGQTGVTYISSGALT 293 (308)
T ss_pred HHhhCC-CceEEEECCC-CHHHHHHHHHcCCCEEEeCccc
Confidence 544432 4789999999 7777877777899999999866
|
|
| >PRK01362 putative translaldolase; Provisional | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.28 Score=47.94 Aligned_cols=122 Identities=16% Similarity=0.130 Sum_probs=84.7
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCc
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDM 409 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~ 409 (590)
...+.+..+.+..-+ +.|-.+- ...| +..++.+++. ++++-+--|-|.++|..+.++|+++| ++..+| .
T Consensus 65 ~m~~~a~~l~~~~~~-i~iKIP~-T~~G-~~a~~~L~~~--Gi~v~~T~vfs~~Qa~~Aa~aGa~yi--spyvgR----i 133 (214)
T PRK01362 65 GMIKEGRELAKIAPN-VVVKIPM-TPEG-LKAVKALSKE--GIKTNVTLIFSANQALLAAKAGATYV--SPFVGR----L 133 (214)
T ss_pred HHHHHHHHHHHhCCC-EEEEeCC-CHHH-HHHHHHHHHC--CCceEEeeecCHHHHHHHHhcCCcEE--Eeecch----H
Confidence 444556666665433 4443321 1123 6677888776 78887777889999999999999988 444444 3
Q ss_pred ccccc-chhHHHHHHHHHhcCC-CcEEecCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 410 QVIGR-NGTAVYRVAEYASRRG-VPVIADGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 410 ~~~g~-~~~~l~~~~~~~~~~~-v~iia~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
.+||. ....+.++.+..+..+ -+-|....+|+..++..+..+|||.+-++..+
T Consensus 134 ~d~g~dg~~~i~~~~~~~~~~~~~tkilaAS~r~~~~v~~~~~~G~d~iTi~~~v 188 (214)
T PRK01362 134 DDIGTDGMELIEDIREIYDNYGFDTEIIAASVRHPMHVLEAALAGADIATIPYKV 188 (214)
T ss_pred hhcCCCHHHHHHHHHHHHHHcCCCcEEEEeecCCHHHHHHHHHcCCCEEecCHHH
Confidence 55676 6666667777665544 23444468999999999999999999888655
|
|
| >PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.19 Score=49.42 Aligned_cols=112 Identities=16% Similarity=0.091 Sum_probs=74.8
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEE---ecc-----cc---CcHHHHHHHHCCCCEEE
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVI---GGN-----VL---FGYQPRATLLNFIYQIE 397 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi---~g~-----v~---s~~~a~~l~~~Gvd~i~ 397 (590)
.+..+.+....++|+..+.+.. .+.++.+++.. +.|++ .++ +. +.+.++.+.++|+|+|.
T Consensus 23 ~~~~~~a~a~~~~G~~~~~~~~--------~~~i~~i~~~~-~~Pil~~~~~d~~~~~~~~~~~~~~v~~a~~aGad~I~ 93 (221)
T PRK01130 23 EIMAAMALAAVQGGAVGIRANG--------VEDIKAIRAVV-DVPIIGIIKRDYPDSEVYITPTLKEVDALAAAGADIIA 93 (221)
T ss_pred HHHHHHHHHHHHCCCeEEEcCC--------HHHHHHHHHhC-CCCEEEEEecCCCCCCceECCCHHHHHHHHHcCCCEEE
Confidence 3456678888888998887632 46777777765 67876 322 22 45689999999999773
Q ss_pred EcccccccCCCccccccchhHHHHHHHHHhc-CCCcEEecCCCCCHHHHHHHHHcCCCEEEEC
Q psy1056 398 MIKFIKKEYPDMQVIGRNGTAVYRVAEYASR-RGVPVIADGGVQSVGHVMKALALGASTAMMG 459 (590)
Q Consensus 398 v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~-~~v~iia~GGi~~~~di~kalalGA~~v~~g 459 (590)
+....... . ....+.++.+.+++ .++|+++ ++.+..++.++..+|+|.+.++
T Consensus 94 ~d~~~~~~-----p---~~~~~~~~i~~~~~~~~i~vi~--~v~t~ee~~~a~~~G~d~i~~~ 146 (221)
T PRK01130 94 LDATLRPR-----P---DGETLAELVKRIKEYPGQLLMA--DCSTLEEGLAAQKLGFDFIGTT 146 (221)
T ss_pred EeCCCCCC-----C---CCCCHHHHHHHHHhCCCCeEEE--eCCCHHHHHHHHHcCCCEEEcC
Confidence 31110000 0 00223455555555 6789998 7889999999999999999664
|
|
| >PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.1 Score=53.11 Aligned_cols=89 Identities=12% Similarity=0.009 Sum_probs=63.8
Q ss_pred HHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecC
Q psy1056 358 QIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADG 437 (590)
Q Consensus 358 ~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~G 437 (590)
+.+.++.+++..+..++.+ +|-|.+++++++++|+|.|-+. . + +++.+.++.+..+. .+.+-+||
T Consensus 192 i~~av~~~r~~~~~~kIeV-Evetleea~eA~~aGaDiImLD---n-----m-----spe~l~~av~~~~~-~~~lEaSG 256 (294)
T PRK06978 192 VGAALDAAFALNAGVPVQI-EVETLAQLETALAHGAQSVLLD---N-----F-----TLDMMREAVRVTAG-RAVLEVSG 256 (294)
T ss_pred HHHHHHHHHHhCCCCcEEE-EcCCHHHHHHHHHcCCCEEEEC---C-----C-----CHHHHHHHHHhhcC-CeEEEEEC
Confidence 4566777776654455444 9999999999999999999221 1 1 33444444444432 57899999
Q ss_pred CCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 438 GVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 438 Gi~~~~di~kalalGA~~v~~g~~l 462 (590)
|| |...+..=-..|.|.+.+|.+.
T Consensus 257 GI-t~~ni~~yA~tGVD~IS~galt 280 (294)
T PRK06978 257 GV-NFDTVRAFAETGVDRISIGALT 280 (294)
T ss_pred CC-CHHHHHHHHhcCCCEEEeCccc
Confidence 99 7787877777899999999866
|
|
| >COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.021 Score=55.19 Aligned_cols=62 Identities=18% Similarity=0.378 Sum_probs=56.1
Q ss_pred ccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcC-CCceEEEEeecccccccCC
Q psy1056 247 DLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILND-KGELIALIARTDLKKSRDY 308 (590)
Q Consensus 247 ~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~-~g~l~Giit~~dll~~~~~ 308 (590)
+..|+|+|.++...++++.+.++.+++..|.+..++++||+.+ .+++.||+-.+||++....
T Consensus 66 dl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~ 128 (293)
T COG4535 66 DLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRS 128 (293)
T ss_pred HhhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcC
Confidence 4779999999888999999999999999999999999999965 4789999999999997543
|
|
| >KOG0474|consensus | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.011 Score=64.44 Aligned_cols=51 Identities=16% Similarity=0.394 Sum_probs=42.6
Q ss_pred CccccCCEEECCCCCHHHHHHHHHHcCccceeeccCC--cccceeEEEEeccc
Q psy1056 23 HGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENG--KLGEKLLGIVTSRD 73 (590)
Q Consensus 23 ~~m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~--~~~~~lvGivT~~D 73 (590)
++|..++++++.-+.+....+++++.+..++||+|+- ...+++.|++-+..
T Consensus 586 ev~~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRsh 638 (762)
T KOG0474|consen 586 EVMSKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSH 638 (762)
T ss_pred hhccCCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHH
Confidence 3499999999999999999999999999999999853 12357788876663
|
|
| >cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites | Back alignment and domain information |
|---|
Probab=95.49 E-value=1.2 Score=44.04 Aligned_cols=65 Identities=20% Similarity=0.301 Sum_probs=46.1
Q ss_pred HHHHHHHHcCCcEEEEecCC--Cch----hhHHHHHHHHHHhCCCceEEe-ccccCcHHHHHHHHCCCCEEEE
Q psy1056 333 NRLKLLSQAGVDVVILDSSQ--GNS----IYQIEMIKFIKKEYPDMQVIG-GNVLFGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 333 e~~~~li~~gad~i~V~~~~--G~~----~~~l~~i~~i~~~~~~vpvi~-g~v~s~~~a~~l~~~Gvd~i~v 398 (590)
+.+..+.+.|++.+.++... |.. ....+.++.+++.. +.|+++ |++.+++++.+++++|+|+|.|
T Consensus 113 ~~~~~~~~~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~-~~Pvi~~GGI~~~~~v~~~l~~GadgV~v 184 (236)
T cd04730 113 EEARKAEAAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAV-DIPVIAAGGIADGRGIAAALALGADGVQM 184 (236)
T ss_pred HHHHHHHHcCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHh-CCCEEEECCCCCHHHHHHHHHcCCcEEEE
Confidence 44566777899988876521 221 12366788888766 688885 4555679999999999999977
|
NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS) | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.79 Score=47.47 Aligned_cols=61 Identities=11% Similarity=0.121 Sum_probs=40.9
Q ss_pred HHHHHHHHcCCcEEEEecCC--Cchh----h--HHHHHHHHHHhC-----CCceEE-eccccCcHHHHHHHHCCC
Q psy1056 333 NRLKLLSQAGVDVVILDSSQ--GNSI----Y--QIEMIKFIKKEY-----PDMQVI-GGNVLFGYQPRATLLNFI 393 (590)
Q Consensus 333 e~~~~li~~gad~i~V~~~~--G~~~----~--~l~~i~~i~~~~-----~~vpvi-~g~v~s~~~a~~l~~~Gv 393 (590)
..++.+.+.|+|.+++...+ ||.- + +...+..+.... .++||+ +|+|.+...+..+...|+
T Consensus 114 ~~A~~a~~~GaD~vVaqG~EAGGH~G~~~t~~L~~~v~~~l~~~~~~~~~~~iPViAAGGI~dgr~~aaalaLGA 188 (320)
T cd04743 114 GLLKQFLENGARKFIFEGRECGGHVGPRSSFVLWESAIDALLAANGPDKAGKIHLLFAGGIHDERSAAMVSALAA 188 (320)
T ss_pred HHHHHHHHcCCCEEEEecCcCcCCCCCCCchhhHHHHHHHHHHhhcccccCCccEEEEcCCCCHHHHHHHHHcCC
Confidence 44567889999999987654 4431 1 123333343222 268988 688889999888888888
|
NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >PRK08227 autoinducer 2 aldolase; Validated | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.18 Score=50.76 Aligned_cols=112 Identities=18% Similarity=0.141 Sum_probs=71.0
Q ss_pred HHHHHHcCCcEEEEecCCCch--hhHHHHHHH---HHHhCCCceEEe-----ccccC-----cHHHHHHHHCCCCEEEEc
Q psy1056 335 LKLLSQAGVDVVILDSSQGNS--IYQIEMIKF---IKKEYPDMQVIG-----GNVLF-----GYQPRATLLNFIYQIEMI 399 (590)
Q Consensus 335 ~~~li~~gad~i~V~~~~G~~--~~~l~~i~~---i~~~~~~vpvi~-----g~v~s-----~~~a~~l~~~Gvd~i~v~ 399 (590)
++..+..|+|.+.++..-|.. ...+..+.. -.++| ++|+++ +++.+ ...++.+.++|||+|++.
T Consensus 100 VeeAvrlGAdAV~~~v~~Gs~~E~~~l~~l~~v~~ea~~~-G~Plla~~prG~~~~~~~~~ia~aaRiaaELGADiVK~~ 178 (264)
T PRK08227 100 MEDAVRLNACAVAAQVFIGSEYEHQSIKNIIQLVDAGLRY-GMPVMAVTAVGKDMVRDARYFSLATRIAAEMGAQIIKTY 178 (264)
T ss_pred HHHHHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHh-CCcEEEEecCCCCcCchHHHHHHHHHHHHHHcCCEEecC
Confidence 556778899999888766543 123333333 33456 788885 11111 123677888999999553
Q ss_pred ccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHH-H----HHHHHHcCCCEEEECccccC
Q psy1056 400 KFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVG-H----VMKALALGASTAMMGSLLAG 464 (590)
Q Consensus 400 ~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~-d----i~kalalGA~~v~~g~~l~~ 464 (590)
.+. +++.++.+ ...+||+..||=+... | +-.|+..||..|.+||-+-.
T Consensus 179 y~~--------------~~f~~vv~---a~~vPVviaGG~k~~~~~~L~~v~~ai~aGa~Gv~~GRNIfQ 231 (264)
T PRK08227 179 YVE--------------EGFERITA---GCPVPIVIAGGKKLPERDALEMCYQAIDEGASGVDMGRNIFQ 231 (264)
T ss_pred CCH--------------HHHHHHHH---cCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCceeeechhhhc
Confidence 211 23344444 3358999999988532 2 34588999999999987643
|
|
| >TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase | Back alignment and domain information |
|---|
Probab=95.30 E-value=1.1 Score=43.41 Aligned_cols=64 Identities=20% Similarity=0.141 Sum_probs=47.8
Q ss_pred HHHHHHHcCCcEEEEecCCCchh-hHHHHHHHHHHhCCCceEEecc-ccCcHHHHHHHHCCCCEEEE
Q psy1056 334 RLKLLSQAGVDVVILDSSQGNSI-YQIEMIKFIKKEYPDMQVIGGN-VLFGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 334 ~~~~li~~gad~i~V~~~~G~~~-~~l~~i~~i~~~~~~vpvi~g~-v~s~~~a~~l~~~Gvd~i~v 398 (590)
.+...-..|++.+++....|... .-.+.++.+++.. +.|+++|. +.++++++.+.++|+|.|.|
T Consensus 139 ~a~aa~~~G~~~i~Le~~sGa~~~v~~e~i~~Vk~~~-~~Pv~vGGGIrs~e~a~~l~~~GAD~VVV 204 (205)
T TIGR01769 139 YCLAAKYFGMKWVYLEAGSGASYPVNPETISLVKKAS-GIPLIVGGGIRSPEIAYEIVLAGADAIVT 204 (205)
T ss_pred HHHHHHHcCCCEEEEEcCCCCCCCCCHHHHHHHHHhh-CCCEEEeCCCCCHHHHHHHHHcCCCEEEe
Confidence 33444467999999977665532 2267888888877 78988765 55999999999999999854
|
This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum. |
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.14 Score=50.73 Aligned_cols=141 Identities=16% Similarity=0.153 Sum_probs=89.3
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCch-----HHHHHHHHHhhhcCCCcccccccccchHHHHHHHHHhccccccccccccCc
Q psy1056 139 KYRLKLLSQAGVDVVILDSSQGNS-----IYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGLRVGSHGCHGF 213 (590)
Q Consensus 139 ~~~~~~l~~~~~dvv~~~~~~~~~-----~~~~~~v~~vk~~~~~~~im~~~~~~~~~~~~a~~~m~~~~~v~~~~~~~~ 213 (590)
...+++|+ +...++.+|..-+.. ....+.+..+.+. +-.+-+.+...+.||+.+.
T Consensus 144 VGv~RALA-adP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~-----l~kTivfVTHDidEA~kLa-------------- 203 (309)
T COG1125 144 VGVARALA-ADPPILLMDEPFGALDPITRKQLQEEIKELQKE-----LGKTIVFVTHDIDEALKLA-------------- 203 (309)
T ss_pred HHHHHHHh-cCCCeEeecCCccccChhhHHHHHHHHHHHHHH-----hCCEEEEEecCHHHHHhhh--------------
Confidence 33444444 467888888765531 2222233333331 1122233366677888776
Q ss_pred eeeEEeeCCCCCCeEEEEEecchhhcc----------ccc-----cccccchhhccccCCCe----eEEcCCCCHHHHHH
Q psy1056 214 CGFPVTENGKLGEKLLGIVTSRDVDFL----------ENS-----ANMDLKIEKVMTNVNEI----ISAQAGISLEEANV 274 (590)
Q Consensus 214 ~~~pVvd~~~~~~~lvGivt~~Dl~~~----------~~~-----~~~~~~V~~im~~~~~~----~tv~~~~~l~ea~~ 274 (590)
+++.|.++ |+++.+-++.++... ... ......+.+.|.+ .. -.+.......+++.
T Consensus 204 dri~vm~~----G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ls 277 (309)
T COG1125 204 DRIAVMDA----GEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRR--GEPADGEPLLEGFVDRDALS 277 (309)
T ss_pred ceEEEecC----CeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhcc--cccccCCccccchhhHHHHH
Confidence 56788886 999999998888611 111 1123556676665 22 12334455667888
Q ss_pred HHHhcCCCcceEEcCCCceEEEEeecccccc
Q psy1056 275 ILEKSKKGKLPILNDKGELIALIARTDLKKS 305 (590)
Q Consensus 275 ~m~~~~~~~lpVvd~~g~l~Giit~~dll~~ 305 (590)
.+...+...+||+|++|+++|.+|+.+++..
T Consensus 278 ~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~~ 308 (309)
T COG1125 278 DFLARGRSVLPVVDEDGRPLGTVTRADLLDE 308 (309)
T ss_pred HHHhcCCceeEEECCCCcEeeEEEHHHHhhh
Confidence 8899999999999999999999999998753
|
|
| >PRK09250 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.19 Score=52.17 Aligned_cols=126 Identities=14% Similarity=0.004 Sum_probs=72.1
Q ss_pred HHHHHHHcCCcEEEEecCCCch--hhHHHHHHHHH---HhCCCceEEe-----cc-ccCc-----------HHHHHHHHC
Q psy1056 334 RLKLLSQAGVDVVILDSSQGNS--IYQIEMIKFIK---KEYPDMQVIG-----GN-VLFG-----------YQPRATLLN 391 (590)
Q Consensus 334 ~~~~li~~gad~i~V~~~~G~~--~~~l~~i~~i~---~~~~~vpvi~-----g~-v~s~-----------~~a~~l~~~ 391 (590)
-++..+..|++.+.++..-|.. ...++.+..+. +.| ++|+++ |. +.+. ..++.+.++
T Consensus 151 sVedAlrLGAdAV~~tvy~Gs~~E~~ml~~l~~i~~ea~~~-GlPlv~~~YpRG~~i~~~~d~~~~~d~Ia~AaRiaaEL 229 (348)
T PRK09250 151 SVEDALRLGAVAVGATIYFGSEESRRQIEEISEAFEEAHEL-GLATVLWSYLRNSAFKKDGDYHTAADLTGQANHLAATI 229 (348)
T ss_pred cHHHHHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHh-CCCEEEEecccCcccCCcccccccHHHHHHHHHHHHHH
Confidence 3566788899999888766532 22333333333 345 788875 22 2222 236778889
Q ss_pred CCCEEEEcccccccCCCcccc-----------cc-chhHHHHHHHHHhcC---CCcEEecCCCCCHH-H----HHHH---
Q psy1056 392 FIYQIEMIKFIKKEYPDMQVI-----------GR-NGTAVYRVAEYASRR---GVPVIADGGVQSVG-H----VMKA--- 448 (590)
Q Consensus 392 Gvd~i~v~~~~~~~~~~~~~~-----------g~-~~~~l~~~~~~~~~~---~v~iia~GGi~~~~-d----i~ka--- 448 (590)
|||+|++...+... +|... ++ +.+....++.+.... .+||+.+||=+.+. | +-.|
T Consensus 230 GADIVKv~yp~~~~--~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~ac~ag~vpVviAGG~k~~~~e~L~~v~~a~~~ 307 (348)
T PRK09250 230 GADIIKQKLPTNNG--GYKAINFGKTDDRVYSKLTSDHPIDLVRYQVANCYMGRRGLINSGGASKGEDDLLDAVRTAVIN 307 (348)
T ss_pred cCCEEEecCCCChh--hHHHhhcccccccccccccccchHHHHHHHHHhhccCCceEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 99999983322111 01110 12 111122223222222 58999999988532 2 3357
Q ss_pred HHcCCCEEEECccc
Q psy1056 449 LALGASTAMMGSLL 462 (590)
Q Consensus 449 lalGA~~v~~g~~l 462 (590)
+..||..+.+||-.
T Consensus 308 i~aGa~Gv~iGRNI 321 (348)
T PRK09250 308 KRAGGMGLIIGRKA 321 (348)
T ss_pred hhcCCcchhhchhh
Confidence 88999999999755
|
|
| >PLN02623 pyruvate kinase | Back alignment and domain information |
|---|
Probab=95.23 E-value=5.7 Score=44.42 Aligned_cols=124 Identities=15% Similarity=0.055 Sum_probs=70.6
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHH--CCCCEEEEcccccccC
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLL--NFIYQIEMIKFIKKEY 406 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~--~Gvd~i~v~~~~~~~~ 406 (590)
+...+.++..++.++|++.+...+. ...+.+.-+.+.....+..+++ -+-+++....+.+ .|+|+|-|...---
T Consensus 278 ekD~~di~f~~~~~vD~ialSFVr~-a~DV~~~r~~l~~~~~~~~iia-kIEt~eaVeNldeIl~g~DgImIgrgDLg-- 353 (581)
T PLN02623 278 EKDWEDIKFGVENKVDFYAVSFVKD-AQVVHELKDYLKSCNADIHVIV-KIESADSIPNLHSIITASDGAMVARGDLG-- 353 (581)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCC-HHHHHHHHHHHHHcCCcceEEE-EECCHHHHHhHHHHHHhCCEEEECcchhh--
Confidence 3445556777889999988754332 2233333333333322444544 5555555543322 49999966211000
Q ss_pred CCcccccc--chhHHHHHHHHHhcCCCcEEecC-------CCCCH-----HHHHHHHHcCCCEEEEC
Q psy1056 407 PDMQVIGR--NGTAVYRVAEYASRRGVPVIADG-------GVQSV-----GHVMKALALGASTAMMG 459 (590)
Q Consensus 407 ~~~~~~g~--~~~~l~~~~~~~~~~~v~iia~G-------Gi~~~-----~di~kalalGA~~v~~g 459 (590)
...|. -+.....+.+.|...+.|++... =-.+| .|++.++..|+|++|++
T Consensus 354 ---velg~~~v~~~qk~Ii~~~~~~gKpvivaTQMLESMi~~~~PTRAEv~Dva~av~dG~d~vmLs 417 (581)
T PLN02623 354 ---AELPIEEVPLLQEEIIRRCRSMGKPVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS 417 (581)
T ss_pred ---hhcCcHHHHHHHHHHHHHHHHhCCCEEEECchhhhcccCCCCCchhHHHHHHHHHcCCCEEEec
Confidence 00122 22334456666777789998644 11256 59999999999999998
|
|
| >TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.063 Score=53.52 Aligned_cols=66 Identities=20% Similarity=0.173 Sum_probs=50.9
Q ss_pred cHHHHHHHHCCCCEEEE-cccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEEC
Q psy1056 382 GYQPRATLLNFIYQIEM-IKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMG 459 (590)
Q Consensus 382 ~~~a~~l~~~Gvd~i~v-~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g 459 (590)
.+.|+...++|++++-| .. |. .... +.+.++..++|+...||||+ .++.+.|.+||+.|.+|
T Consensus 41 ~~~A~~~~~~Ga~~lHvVDL------------g~~n~~~---i~~i~~~~~~~v~vGGGIr~-e~v~~~l~aGa~rVvIG 104 (253)
T TIGR02129 41 SYYAKLYKDDGVKGCHVIML------------GPNNDDA---AKEALHAYPGGLQVGGGIND-TNAQEWLDEGASHVIVT 104 (253)
T ss_pred HHHHHHHHHcCCCEEEEEEC------------CCCcHHH---HHHHHHhCCCCEEEeCCcCH-HHHHHHHHcCCCEEEEC
Confidence 57899999999998843 21 11 2333 34444456799999999997 99999999999999999
Q ss_pred cccc
Q psy1056 460 SLLA 463 (590)
Q Consensus 460 ~~l~ 463 (590)
+.+.
T Consensus 105 S~av 108 (253)
T TIGR02129 105 SWLF 108 (253)
T ss_pred cHHH
Confidence 8664
|
This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut. |
| >PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.59 Score=45.82 Aligned_cols=124 Identities=15% Similarity=0.073 Sum_probs=69.5
Q ss_pred HHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccccccch
Q psy1056 337 LLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNG 416 (590)
Q Consensus 337 ~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~ 416 (590)
.+.++|++.+.++... ...-+...++.+++.-..+-|-+-...+.+.++...+.|++.+.+....... +.|.-..+
T Consensus 75 ~~~~~Gad~vTvH~~a-~~~~i~~~~~~~~~~g~~~~V~llts~~~~~l~~~~~~~~~~~vl~~a~~~~---~~G~v~s~ 150 (216)
T PRK13306 75 MAFEAGADWVTVICAA-HIPTIKAALKVAKEFNGEIQIELYGNWTWEQAQQWRDAGISQVIYHRSRDAQ---LAGVAWGE 150 (216)
T ss_pred HHHHCCCCEEEEeCCC-CHHHHHHHHHHHHHcCCEEEEEECCCCCHHHHHHHHcCChhhhhhhhhhhhh---hcCCCCCH
Confidence 4779999999998743 3333344445444431112222334446677777777776644221111111 22211155
Q ss_pred hHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCCC
Q psy1056 417 TAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTS 466 (590)
Q Consensus 417 ~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~~ 466 (590)
..+..+++.+. .+..+..+|||+-. .+.+....|||.+++|+++..+.
T Consensus 151 ~~~~~ir~~~~-~~~~i~V~gGI~~~-~~~~~~~~~ad~~VvGr~I~~a~ 198 (216)
T PRK13306 151 KDLNKVKKLSD-MGFKVSVTGGLVVE-DLKLFKGIPVKTFIAGRAIRGAA 198 (216)
T ss_pred HHHHHHHHHhc-CCCeEEEcCCCCHh-hHHHHhcCCCCEEEECCcccCCC
Confidence 55666666653 35558889999732 22223444999999999986554
|
|
| >TIGR00262 trpA tryptophan synthase, alpha subunit | Back alignment and domain information |
|---|
Probab=95.17 E-value=1.3 Score=44.52 Aligned_cols=42 Identities=14% Similarity=-0.051 Sum_probs=34.7
Q ss_pred hhHHHHHHHHHHhCCCceEEecccc-CcHHHHHHHHCCCCEEEE
Q psy1056 356 IYQIEMIKFIKKEYPDMQVIGGNVL-FGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 356 ~~~l~~i~~i~~~~~~vpvi~g~v~-s~~~a~~l~~~Gvd~i~v 398 (590)
..+.+.++.+++.. +.|+++|... ++++++++.++|+|++.|
T Consensus 184 ~~~~~~i~~lr~~~-~~pi~vgfGI~~~e~~~~~~~~GADgvVv 226 (256)
T TIGR00262 184 SALNELVKRLKAYS-AKPVLVGFGISKPEQVKQAIDAGADGVIV 226 (256)
T ss_pred hhHHHHHHHHHhhc-CCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 34678899999876 6788887655 699999999999999955
|
Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences. |
| >PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.064 Score=53.11 Aligned_cols=73 Identities=23% Similarity=0.330 Sum_probs=48.3
Q ss_pred HHHHHHHHCCCCEEEE-cccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcc
Q psy1056 383 YQPRATLLNFIYQIEM-IKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSL 461 (590)
Q Consensus 383 ~~a~~l~~~Gvd~i~v-~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~ 461 (590)
+.|+.+.+.|++.+-+ ....... |. ...+..+.+.++...+|+..+||||+..|+.+.+.+||+.|.+|+.
T Consensus 33 ~~a~~~~~~g~~~l~ivDLdaa~~-------g~-~~n~~~i~~i~~~~~~~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt~ 104 (229)
T PF00977_consen 33 EVAKAFNEQGADELHIVDLDAAKE-------GR-GSNLELIKEIAKETGIPIQVGGGIRSIEDAERLLDAGADRVVIGTE 104 (229)
T ss_dssp HHHHHHHHTT-SEEEEEEHHHHCC-------TH-HHHHHHHHHHHHHSSSEEEEESSE-SHHHHHHHHHTT-SEEEESHH
T ss_pred HHHHHHHHcCCCEEEEEEccCccc-------Cc-hhHHHHHHHHHhcCCccEEEeCccCcHHHHHHHHHhCCCEEEeChH
Confidence 5677788899998865 2111111 11 1112233444555579999999999999999999999999999986
Q ss_pred cc
Q psy1056 462 LA 463 (590)
Q Consensus 462 l~ 463 (590)
..
T Consensus 105 ~~ 106 (229)
T PF00977_consen 105 AL 106 (229)
T ss_dssp HH
T ss_pred Hh
Confidence 54
|
Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F .... |
| >PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.09 Score=52.42 Aligned_cols=72 Identities=15% Similarity=0.073 Sum_probs=50.5
Q ss_pred HHHHHHHHCCCCEEEE-cccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcc
Q psy1056 383 YQPRATLLNFIYQIEM-IKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSL 461 (590)
Q Consensus 383 ~~a~~l~~~Gvd~i~v-~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~ 461 (590)
+.|+.+.+.|+|.+-+ ....... +.+.....+.++.+. . .|+..+||||+-.|+.+.|.+||+.|.+|+.
T Consensus 34 ~~A~~~~~~ga~~lhivDLd~a~~-----g~~~n~~~i~~i~~~---~-~~v~vGGGIrs~e~~~~~l~~Ga~rvvigT~ 104 (241)
T PRK14114 34 ELVEKLIEEGFTLIHVVDLSKAIE-----NSVENLPVLEKLSEF---A-EHIQIGGGIRSLDYAEKLRKLGYRRQIVSSK 104 (241)
T ss_pred HHHHHHHHCCCCEEEEEECCCccc-----CCcchHHHHHHHHhh---c-CcEEEecCCCCHHHHHHHHHCCCCEEEECch
Confidence 5577888899998865 2221111 111133444444443 3 6999999999999999999999999999985
Q ss_pred cc
Q psy1056 462 LA 463 (590)
Q Consensus 462 l~ 463 (590)
..
T Consensus 105 a~ 106 (241)
T PRK14114 105 VL 106 (241)
T ss_pred hh
Confidence 43
|
|
| >COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.48 Score=45.77 Aligned_cols=116 Identities=13% Similarity=0.152 Sum_probs=80.3
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEe--cccc-CcHHHHHHHHCCCCEEEEcccccccC
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIG--GNVL-FGYQPRATLLNFIYQIEMIKFIKKEY 406 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~--g~v~-s~~~a~~l~~~Gvd~i~v~~~~~~~~ 406 (590)
+..+.++.+.+. ++++.+-++-=..+| .+.++.+|+.+|+.++++ |..- ..-.++.+.++|+|++-|+-+.
T Consensus 17 ~Ai~~a~~v~~~-~diiEvGTpLik~eG-~~aV~~lr~~~pd~~IvAD~Kt~D~G~~e~~ma~~aGAd~~tV~g~A---- 90 (217)
T COG0269 17 EAIEIAEEVADY-VDIIEVGTPLIKAEG-MRAVRALRELFPDKIIVADLKTADAGAIEARMAFEAGADWVTVLGAA---- 90 (217)
T ss_pred HHHHHHHHhhhc-ceEEEeCcHHHHHhh-HHHHHHHHHHCCCCeEEeeeeecchhHHHHHHHHHcCCCEEEEEecC----
Confidence 344455556566 888877553222233 479999999999998885 3332 3446788999999999543222
Q ss_pred CCccccccchhHHHHHHHHHhcCCCcEEecC-CCCCHHHHHHHHH-cCCCEEEEC
Q psy1056 407 PDMQVIGRNGTAVYRVAEYASRRGVPVIADG-GVQSVGHVMKALA-LGASTAMMG 459 (590)
Q Consensus 407 ~~~~~~g~~~~~l~~~~~~~~~~~v~iia~G-Gi~~~~di~kala-lGA~~v~~g 459 (590)
...++..+.+.+++++..+..+= |.+++.+.++=+. +|.|.+.+=
T Consensus 91 --------~~~TI~~~i~~A~~~~~~v~iDl~~~~~~~~~~~~l~~~gvd~~~~H 137 (217)
T COG0269 91 --------DDATIKKAIKVAKEYGKEVQIDLIGVWDPEQRAKWLKELGVDQVILH 137 (217)
T ss_pred --------CHHHHHHHHHHHHHcCCeEEEEeecCCCHHHHHHHHHHhCCCEEEEE
Confidence 33456666667777777666654 9999999999999 999999443
|
|
| >PRK12653 fructose-6-phosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.66 Score=45.51 Aligned_cols=122 Identities=15% Similarity=0.163 Sum_probs=81.2
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCC
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPD 408 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~ 408 (590)
+...+.+..+.+.+-+ +.|-.+- ...| +..++.++++ ++++-+=-|-|.++|..+..+|+++| ++..+|-
T Consensus 66 e~mi~ea~~l~~~~~n-i~IKIP~-T~~G-l~A~~~L~~~--GI~vn~T~vfs~~Qa~~Aa~aGa~yI--spyvgR~--- 135 (220)
T PRK12653 66 EGMVNDARKLRSIIAD-IVVKVPV-TAEG-LAAIKMLKAE--GIPTLGTAVYGAAQGLLSALAGAEYV--APYVNRI--- 135 (220)
T ss_pred HHHHHHHHHHHHhCCC-EEEEeCC-CHHH-HHHHHHHHHc--CCCeeEEEecCHHHHHHHHhcCCcEE--EeecChH---
Confidence 3445556666666544 4443321 1122 6778888777 78887777889999999999999988 4444443
Q ss_pred cccccc-chhHHHHHHHHHhcC--CCcEEecCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 409 MQVIGR-NGTAVYRVAEYASRR--GVPVIADGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 409 ~~~~g~-~~~~l~~~~~~~~~~--~v~iia~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
.+.|. ....+.++.+..+.. +..|++ ..+|++.++..++.+|||.+-+...+
T Consensus 136 -~~~g~dg~~~i~~i~~~~~~~~~~tkILa-AS~r~~~~v~~~~~~G~d~vTip~~v 190 (220)
T PRK12653 136 -DAQGGSGIQTVTDLQQLLKMHAPQAKVLA-ASFKTPRQALDCLLAGCESITLPLDV 190 (220)
T ss_pred -hhcCCChHHHHHHHHHHHHhcCCCcEEEE-EecCCHHHHHHHHHcCCCEEECCHHH
Confidence 33455 444555666555443 233444 58999999999999999999887655
|
|
| >PRK12656 fructose-6-phosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.92 Score=44.52 Aligned_cols=122 Identities=18% Similarity=0.234 Sum_probs=80.1
Q ss_pred hhHHHHHHHHHH-cCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCC
Q psy1056 329 EADKNRLKLLSQ-AGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYP 407 (590)
Q Consensus 329 ~~~~e~~~~li~-~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~ 407 (590)
+...+.+..+.+ .+ +-+.|-.+- ... -+..++.++++ ++++-+=-|.|.++|..+.++|+++| ++..+|.
T Consensus 67 ~~mi~eA~~l~~~~~-~nv~VKIP~-T~~-Gl~Ai~~L~~~--Gi~vn~T~ifs~~Qa~~Aa~aGa~yv--sPyvgRi-- 137 (222)
T PRK12656 67 EGILKDAHEIRRQCG-DDVYIKVPV-TPA-GLAAIKTLKAE--GYHITATAIYTVFQGLLAIEAGADYL--APYYNRM-- 137 (222)
T ss_pred HHHHHHHHHHHHHhC-CCEEEEeCC-CHH-HHHHHHHHHHC--CCceEEeeeCCHHHHHHHHHCCCCEE--ecccchh--
Confidence 344455666653 34 323333221 111 26678888777 78887767889999999999999987 4444443
Q ss_pred Ccccccc-chhHHHHHHHHHhcC--CCcEEecCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 408 DMQVIGR-NGTAVYRVAEYASRR--GVPVIADGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 408 ~~~~~g~-~~~~l~~~~~~~~~~--~v~iia~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
.+.|. ....+.++....... +..|++ .-+|++.++..|+.+|||.+-+...+
T Consensus 138 --~d~g~D~~~~i~~i~~~~~~~~~~tkILa-AS~r~~~~v~~a~~~G~d~vTvp~~v 192 (222)
T PRK12656 138 --ENLNIDSNAVIGQLAEAIDRENSDSKILA-ASFKNVAQVNKAFALGAQAVTAGPDV 192 (222)
T ss_pred --hhcCCCHHHHHHHHHHHHHhcCCCCEEEE-EecCCHHHHHHHHHcCCCEEecCHHH
Confidence 34455 444455555555433 344444 57999999999999999999888655
|
|
| >COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.45 Score=46.33 Aligned_cols=109 Identities=14% Similarity=0.149 Sum_probs=77.1
Q ss_pred HHHHHHHHHcCCcEEEEecCCCchhh---HHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCC
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGNSIY---QIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPD 408 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~~~~---~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~ 408 (590)
.+.++.+++.|+..+.+-........ ....+..+.+++ ++|+++. +..+.+.+.|+|+| |.+..
T Consensus 24 ~~~ve~al~~Gv~~vQlR~K~~~~~~~~~~a~~~~~lc~~~-~v~liIN-----d~~dlA~~~~AdGV----HlGq~--- 90 (211)
T COG0352 24 LEWVEAALKGGVTAVQLREKDLSDEEYLALAEKLRALCQKY-GVPLIIN-----DRVDLALAVGADGV----HLGQD--- 90 (211)
T ss_pred HHHHHHHHhCCCeEEEEecCCCChHHHHHHHHHHHHHHHHh-CCeEEec-----CcHHHHHhCCCCEE----EcCCc---
Confidence 67888999999999988665544322 345667777777 7888873 35566678999999 54433
Q ss_pred ccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 409 MQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 409 ~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
-..+.+.++.+. -..|....+.+-.++.+|..+|||+|.+|+.|.
T Consensus 91 -------D~~~~~ar~~~~---~~~iIG~S~h~~eea~~A~~~g~DYv~~Gpifp 135 (211)
T COG0352 91 -------DMPLAEARELLG---PGLIIGLSTHDLEEALEAEELGADYVGLGPIFP 135 (211)
T ss_pred -------ccchHHHHHhcC---CCCEEEeecCCHHHHHHHHhcCCCEEEECCcCC
Confidence 112334444432 235555678899999999999999999999994
|
|
| >PRK06852 aldolase; Validated | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.35 Score=49.60 Aligned_cols=118 Identities=12% Similarity=-0.004 Sum_probs=69.9
Q ss_pred HHHHHHcC------CcEEEEecCCCch--hhHHHHHHHHH---HhCCCceEEe-----c-cccC-------cHHHHHHHH
Q psy1056 335 LKLLSQAG------VDVVILDSSQGNS--IYQIEMIKFIK---KEYPDMQVIG-----G-NVLF-------GYQPRATLL 390 (590)
Q Consensus 335 ~~~li~~g------ad~i~V~~~~G~~--~~~l~~i~~i~---~~~~~vpvi~-----g-~v~s-------~~~a~~l~~ 390 (590)
++..+..| ++.+.++..-|.. ...+..+..+. +.| ++|+++ | ++.. ...++.+.+
T Consensus 121 VeeAvrlG~~~~~~AdAV~v~v~~Gs~~E~~ml~~l~~v~~ea~~~-GlPll~~~yprG~~i~~~~~~~~ia~aaRiaaE 199 (304)
T PRK06852 121 VEQVVEFKENSGLNILGVGYTIYLGSEYESEMLSEAAQIIYEAHKH-GLIAVLWIYPRGKAVKDEKDPHLIAGAAGVAAC 199 (304)
T ss_pred HHHHHhcCCccCCCceEEEEEEecCCHHHHHHHHHHHHHHHHHHHh-CCcEEEEeeccCcccCCCccHHHHHHHHHHHHH
Confidence 44455656 8888887765532 22333333333 455 788874 2 2222 223577888
Q ss_pred CCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCH-HHH----HHHHH-cCCCEEEECccc
Q psy1056 391 NFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSV-GHV----MKALA-LGASTAMMGSLL 462 (590)
Q Consensus 391 ~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~-~di----~kala-lGA~~v~~g~~l 462 (590)
+|||+|++...+.+. . | ..+.+.++.+.|. .+||+.+||=+.+ .|+ -.|+. .||..+.+||-.
T Consensus 200 LGADIVKv~y~~~~~----~--g-~~e~f~~vv~~~g--~vpVviaGG~k~~~~e~L~~v~~ai~~aGa~Gv~~GRNI 268 (304)
T PRK06852 200 LGADFVKVNYPKKEG----A--N-PAELFKEAVLAAG--RTKVVCAGGSSTDPEEFLKQLYEQIHISGASGNATGRNI 268 (304)
T ss_pred HcCCEEEecCCCcCC----C--C-CHHHHHHHHHhCC--CCcEEEeCCCCCCHHHHHHHHHHHHHHcCCceeeechhh
Confidence 999999775433211 0 0 2344555544431 4899999988753 233 34777 899999999865
|
|
| >TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.55 Score=47.05 Aligned_cols=120 Identities=14% Similarity=0.119 Sum_probs=72.6
Q ss_pred HHHHHHHHHcCCcEEEEec-------CCCchhhHHHHHHHHHHhCC-CceEEe----c------cccCcHHHHHHHHCC-
Q psy1056 332 KNRLKLLSQAGVDVVILDS-------SQGNSIYQIEMIKFIKKEYP-DMQVIG----G------NVLFGYQPRATLLNF- 392 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~-------~~G~~~~~l~~i~~i~~~~~-~vpvi~----g------~v~s~~~a~~l~~~G- 392 (590)
...+......|++++-++. .+|..++....+-++|+... ++.+.+ | +..-.+.++.++..|
T Consensus 92 ~aal~iA~a~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~r~~l~~~v~i~adV~~kh~~~l~~~~~~e~a~~~~~~~~ 171 (257)
T TIGR00259 92 VAALAIAMAVGAKFIRVNVLTGVYASDQGIIEGNAGELIRYKKLLGSEVKILADIVVKHAVHLGNRDLESIALDTVERGL 171 (257)
T ss_pred HHHHHHHHHhCCCEEEEccEeeeEecccccccccHHHHHHHHHHcCCCcEEEeceeecccCcCCCCCHHHHHHHHHHhcC
Confidence 3445555667999887643 34544444444444555532 454442 1 112235677777666
Q ss_pred CCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 393 IYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 393 vd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
+|++.|+-..+-. .. ..+.+..+++.. .++|++..||+ |+..+.+++.. ||++.+|+.|
T Consensus 172 aDavivtG~~TG~---~~----d~~~l~~vr~~~--~~~PvllggGv-t~eNv~e~l~~-adGviVgS~~ 230 (257)
T TIGR00259 172 ADAVILSGKTTGT---EV----DLELLKLAKETV--KDTPVLAGSGV-NLENVEELLSI-ADGVIVATTI 230 (257)
T ss_pred CCEEEECcCCCCC---CC----CHHHHHHHHhcc--CCCeEEEECCC-CHHHHHHHHhh-CCEEEECCCc
Confidence 9999654322211 01 233344444322 24899999998 89999999987 9999999988
|
Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis. |
| >PRK07315 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.81 Score=47.00 Aligned_cols=126 Identities=13% Similarity=0.077 Sum_probs=81.4
Q ss_pred HHHHHHHHHcCCcEEEEecCCCchhhHHHHH---HHHHHhCCCceEE------ec--------cc-cCcHHHHHHHHCCC
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGNSIYQIEMI---KFIKKEYPDMQVI------GG--------NV-LFGYQPRATLLNFI 393 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~~~~~l~~i---~~i~~~~~~vpvi------~g--------~v-~s~~~a~~l~~~Gv 393 (590)
.+.+...++.|++.+.++.++-..+.-++.. ..+...+ ++++= .| .. .++++|+++.+.|+
T Consensus 89 ~~~i~~ai~~GftSVm~d~S~l~~eEni~~t~~v~~~a~~~-gv~vE~ElG~i~g~ed~~~g~s~~t~peea~~f~~tgv 167 (293)
T PRK07315 89 YEDALECIEVGYTSIMFDGSHLPVEENLKLAKEVVEKAHAK-GISVEAEVGTIGGEEDGIIGKGELAPIEDAKAMVETGI 167 (293)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHc-CCEEEEecCcccCcCccccCccCCCCHHHHHHHHHcCC
Confidence 4566777889999999988775443333333 3333333 34332 11 12 48999999999999
Q ss_pred CEEEEcccccccCCCccc-cc-cchhHHHHHHHHHhcCCCcEEecCC--CCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 394 YQIEMIKFIKKEYPDMQV-IG-RNGTAVYRVAEYASRRGVPVIADGG--VQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 394 d~i~v~~~~~~~~~~~~~-~g-~~~~~l~~~~~~~~~~~v~iia~GG--i~~~~di~kalalGA~~v~~g~~l~ 463 (590)
|++-+++.+.+.. +.+ .. +.+..|.++++... ++|+++=|| | +..++.+++..|++.|-+++.+.
T Consensus 168 D~LAv~iG~vHG~--y~t~~k~l~~e~L~~i~~~~~--~iPlVlhGGSGi-~~e~~~~~i~~Gi~KiNv~T~i~ 236 (293)
T PRK07315 168 DFLAAGIGNIHGP--YPENWEGLDLDHLEKLTEAVP--GFPIVLHGGSGI-PDDQIQEAIKLGVAKVNVNTECQ 236 (293)
T ss_pred CEEeecccccccc--CCCCCCcCCHHHHHHHHHhcc--CCCEEEECCCCC-CHHHHHHHHHcCCCEEEEccHHH
Confidence 9997765444220 111 11 13444555554431 499999888 8 67889999999999999998874
|
|
| >COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.58 E-value=2.2 Score=41.71 Aligned_cols=54 Identities=22% Similarity=0.206 Sum_probs=37.7
Q ss_pred CCcEEEEecCCCchhhH-HHHHHHHHHhCCCceEEec-cccCcHHHHHHHHCCCCEEEE
Q psy1056 342 GVDVVILDSSQGNSIYQ-IEMIKFIKKEYPDMQVIGG-NVLFGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 342 gad~i~V~~~~G~~~~~-l~~i~~i~~~~~~vpvi~g-~v~s~~~a~~l~~~Gvd~i~v 398 (590)
|..++-+..+.|..... .+.++..+.. .++++| ++.|+|+|+++.++|||.|.+
T Consensus 164 g~~~~YlEagsga~~Pv~~e~v~~v~~~---~~LivGGGIrs~E~A~~~a~agAD~IVt 219 (240)
T COG1646 164 GMPVVYLEAGSGAGDPVPVEMVSRVLSD---TPLIVGGGIRSPEQAREMAEAGADTIVT 219 (240)
T ss_pred CCeEEEEEecCCCCCCcCHHHHHHhhcc---ceEEEcCCcCCHHHHHHHHHcCCCEEEE
Confidence 77777777666544332 4555555544 477765 556999999999999999943
|
|
| >PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.5 Score=45.83 Aligned_cols=111 Identities=14% Similarity=0.154 Sum_probs=70.0
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHH---HHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccC
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKF---IKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEY 406 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~---i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~ 406 (590)
...+.++.+.+.|++.++++..........+.++. +...+ ++++++. +..+.+.++|+|++ +....
T Consensus 22 ~~~~~~~~~~~~gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~-----~~~~~a~~~gad~v----h~~~~- 90 (212)
T PRK00043 22 DLLEVVEAALEGGVTLVQLREKGLDTRERLELARALKELCRRY-GVPLIVN-----DRVDLALAVGADGV----HLGQD- 90 (212)
T ss_pred cHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHh-CCeEEEe-----ChHHHHHHcCCCEE----ecCcc-
Confidence 35677888999999999998765443333334433 33344 6777762 56788889999998 22111
Q ss_pred CCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 407 PDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 407 ~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
. .....++.. ...+. +.+--+.|..++.+|..+|||.|.+|+.|.
T Consensus 91 --------~-~~~~~~~~~-~~~~~--~~g~~~~t~~e~~~a~~~gaD~v~~~~~~~ 135 (212)
T PRK00043 91 --------D-LPVADARAL-LGPDA--IIGLSTHTLEEAAAALAAGADYVGVGPIFP 135 (212)
T ss_pred --------c-CCHHHHHHH-cCCCC--EEEEeCCCHHHHHHHhHcCCCEEEECCccC
Confidence 0 011122222 12223 332345688999999999999999997774
|
|
| >TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein | Back alignment and domain information |
|---|
Probab=94.43 E-value=3.6 Score=40.36 Aligned_cols=57 Identities=16% Similarity=0.145 Sum_probs=43.5
Q ss_pred CCcEEEEecCCCchhhH-HHHHHHHHHhCCCceEEe-ccccCcHHHHHHHHCCCCEEEE
Q psy1056 342 GVDVVILDSSQGNSIYQ-IEMIKFIKKEYPDMQVIG-GNVLFGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 342 gad~i~V~~~~G~~~~~-l~~i~~i~~~~~~vpvi~-g~v~s~~~a~~l~~~Gvd~i~v 398 (590)
|..++-+..+.|..... .+.++.+++..++.|+++ |++-+.++++.+.++|||.|.|
T Consensus 149 g~~~vYlE~gs~~g~~v~~e~i~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVV 207 (223)
T TIGR01768 149 GMPIIYLEAGSGAPEPVPPELVAEVKKVLDKARLFVGGGIRSVEKAREMAEAGADTIVT 207 (223)
T ss_pred CCcEEEEEecCCCCCCcCHHHHHHHHHHcCCCCEEEecCCCCHHHHHHHHHcCCCEEEE
Confidence 78888887665544333 567888888765688865 4566999999999999999955
|
This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired. |
| >TIGR00736 nifR3_rel_arch TIM-barrel protein, putative | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.24 Score=48.92 Aligned_cols=69 Identities=14% Similarity=0.176 Sum_probs=54.4
Q ss_pred hHHHHHHHHHHcCCcEEEEecCC-CchhhHHHHHHHHHHhCCCceEE-eccccCcHHHHHHHHCCCCEEEE
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQ-GNSIYQIEMIKFIKKEYPDMQVI-GGNVLFGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~-G~~~~~l~~i~~i~~~~~~vpvi-~g~v~s~~~a~~l~~~Gvd~i~v 398 (590)
+..+.++.+.++|++.++|+... |...--++.++.+++.++++||| -|+|.|.++|++..++|||++-|
T Consensus 149 ~~~~~a~~l~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~~GAd~Vmv 219 (231)
T TIGR00736 149 DELIDALNLVDDGFDGIHVDAMYPGKPYADMDLLKILSEEFNDKIIIGNNSIDDIESAKEMLKAGADFVSV 219 (231)
T ss_pred hHHHHHHHHHHcCCCEEEEeeCCCCCchhhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHHHhCCCeEEE
Confidence 45678889999999999997432 21112368899999987558888 58888999999999999999954
|
Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins. |
| >PRK06806 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=94.24 E-value=2.1 Score=43.74 Aligned_cols=131 Identities=11% Similarity=0.047 Sum_probs=82.4
Q ss_pred eEeeccchhHHHHHHHHHHcCCcEEEEecCCCc-----hhhHHHHHHHHHHhCCCceEEe--ccccCcHHHHHHHHCCCC
Q psy1056 322 GAAIGTREADKNRLKLLSQAGVDVVILDSSQGN-----SIYQIEMIKFIKKEYPDMQVIG--GNVLFGYQPRATLLNFIY 394 (590)
Q Consensus 322 ~a~i~~~~~~~e~~~~li~~gad~i~V~~~~G~-----~~~~l~~i~~i~~~~~~vpvi~--g~v~s~~~a~~l~~~Gvd 394 (590)
..++...+.....++..-+.+.++|. ..+++. ...+...+....+.. ++||.+ ....+.+.+++++++|++
T Consensus 22 Afn~~n~e~~~avi~aAe~~~~Pvii-~~~~~~~~~~~~~~~~~~~~~~a~~~-~vpv~lHlDH~~~~e~i~~Al~~G~t 99 (281)
T PRK06806 22 AFSVANMEMVMGAIKAAEELNSPIIL-QIAEVRLNHSPLHLIGPLMVAAAKQA-KVPVAVHFDHGMTFEKIKEALEIGFT 99 (281)
T ss_pred EEEeCCHHHHHHHHHHHHHhCCCEEE-EcCcchhccCChHHHHHHHHHHHHHC-CCCEEEECCCCCCHHHHHHHHHcCCC
Confidence 44555555555667777777877654 333322 123345556666666 688874 466689999999999999
Q ss_pred EEEEc--ccccccCCCccccccchhHHHHHHHHHhcCCCcEEecC---C------------CCCHHHHHHHHH-cCCCEE
Q psy1056 395 QIEMI--KFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADG---G------------VQSVGHVMKALA-LGASTA 456 (590)
Q Consensus 395 ~i~v~--~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~G---G------------i~~~~di~kala-lGA~~v 456 (590)
.|-+. -...++ ....-.++.+.+...++|+=+++ | ..++.++.++.. .|+|++
T Consensus 100 sVm~d~s~~~~~e---------ni~~t~~v~~~a~~~gv~veaE~ghlG~~d~~~~~~g~s~t~~eea~~f~~~tg~DyL 170 (281)
T PRK06806 100 SVMFDGSHLPLEE---------NIQKTKEIVELAKQYGATVEAEIGRVGGSEDGSEDIEMLLTSTTEAKRFAEETDVDAL 170 (281)
T ss_pred EEEEcCCCCCHHH---------HHHHHHHHHHHHHHcCCeEEEEeeeECCccCCcccccceeCCHHHHHHHHHhhCCCEE
Confidence 88441 111111 22223345666666777776654 2 468888887774 599999
Q ss_pred EE--Ccccc
Q psy1056 457 MM--GSLLA 463 (590)
Q Consensus 457 ~~--g~~l~ 463 (590)
.+ |+.+.
T Consensus 171 AvaiG~~hg 179 (281)
T PRK06806 171 AVAIGNAHG 179 (281)
T ss_pred EEccCCCCC
Confidence 88 88773
|
|
| >PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.25 Score=49.04 Aligned_cols=74 Identities=9% Similarity=0.066 Sum_probs=50.0
Q ss_pred cHHHHHHHHCCCCEEEE-cccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECc
Q psy1056 382 GYQPRATLLNFIYQIEM-IKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGS 460 (590)
Q Consensus 382 ~~~a~~l~~~Gvd~i~v-~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~ 460 (590)
.+.|+.+.+.|++.+-+ ...... +.+.....+.++.+. .-.|+-.+||||+..|+.+.|.+||+.|.+|+
T Consensus 33 ~~~a~~~~~~ga~~lhivDLd~a~------~~~~n~~~i~~i~~~---~~~~v~vGGGIrs~e~~~~~l~~Ga~kvvigt 103 (232)
T PRK13586 33 IEIASKLYNEGYTRIHVVDLDAAE------GVGNNEMYIKEISKI---GFDWIQVGGGIRDIEKAKRLLSLDVNALVFST 103 (232)
T ss_pred HHHHHHHHHCCCCEEEEEECCCcC------CCcchHHHHHHHHhh---CCCCEEEeCCcCCHHHHHHHHHCCCCEEEECc
Confidence 35677788899998865 211110 111133333333332 22499999999999999999999999999998
Q ss_pred cccC
Q psy1056 461 LLAG 464 (590)
Q Consensus 461 ~l~~ 464 (590)
....
T Consensus 104 ~a~~ 107 (232)
T PRK13586 104 IVFT 107 (232)
T ss_pred hhhC
Confidence 6643
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.063 Score=57.28 Aligned_cols=83 Identities=5% Similarity=0.073 Sum_probs=62.0
Q ss_pred ccCceeeEEeeCCCCCCeEEEEEecchhhccccccccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcC
Q psy1056 210 CHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILND 289 (590)
Q Consensus 210 ~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~ 289 (590)
.++.+.+.|+++ |+++..+........ ....+.+ +.. +..++++++++.+++..+.+.... +||+|+
T Consensus 297 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~~-~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~ 363 (382)
T TIGR03415 297 DRRDTWLFTIDK--------QVRRRDAKLPVQAWA-AEQEVES-LEA--APTVINPDTLMRDVLAARHRTGGA-ILLVEN 363 (382)
T ss_pred hcccceeEeecc--------ceecccchHhHhhcc-cccchhh-hcc--cCcccCCCCcHHHHHHHHhcCCCC-eEEeeC
Confidence 356677778774 788877765221100 1234666 555 788999999999999999988866 888886
Q ss_pred CCceEEEEeeccccccc
Q psy1056 290 KGELIALIARTDLKKSR 306 (590)
Q Consensus 290 ~g~l~Giit~~dll~~~ 306 (590)
|+++|+|++.+++..+
T Consensus 364 -~~~~g~~~~~~~~~~~ 379 (382)
T TIGR03415 364 -GRIVGVIGDDNIYHAL 379 (382)
T ss_pred -CeEEEEEeHHHHHHHH
Confidence 9999999999998765
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.69 Score=45.33 Aligned_cols=112 Identities=14% Similarity=0.105 Sum_probs=70.5
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEe---ccc------c--CcHHHHHHHHCCCCEEE
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIG---GNV------L--FGYQPRATLLNFIYQIE 397 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~---g~v------~--s~~~a~~l~~~Gvd~i~ 397 (590)
....+.++...++|+..+.++ ..+.++.+++.. ++|++. +.. . +.+.++.+.++|+|+|.
T Consensus 27 ~~i~~~a~~~~~~G~~~~~~~--------~~~~~~~i~~~~-~iPil~~~~~~~~~~~~~ig~~~~~~~~a~~aGad~I~ 97 (219)
T cd04729 27 EIMAAMALAAVQGGAVGIRAN--------GVEDIRAIRARV-DLPIIGLIKRDYPDSEVYITPTIEEVDALAAAGADIIA 97 (219)
T ss_pred HHHHHHHHHHHHCCCeEEEcC--------CHHHHHHHHHhC-CCCEEEEEecCCCCCCceeCCCHHHHHHHHHcCCCEEE
Confidence 345678888999999887641 135666666653 678762 222 1 34588999999999884
Q ss_pred EcccccccCCCccccccchhHHHHHHHHHhcCC-CcEEecCCCCCHHHHHHHHHcCCCEEEEC
Q psy1056 398 MIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRG-VPVIADGGVQSVGHVMKALALGASTAMMG 459 (590)
Q Consensus 398 v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~-v~iia~GGi~~~~di~kalalGA~~v~~g 459 (590)
+.. .... . . ....+.++.+.+++.+ +|++. ++.|..++.++..+|+|.+.+.
T Consensus 98 ~~~-~~~~---~-p---~~~~~~~~i~~~~~~g~~~iiv--~v~t~~ea~~a~~~G~d~i~~~ 150 (219)
T cd04729 98 LDA-TDRP---R-P---DGETLAELIKRIHEEYNCLLMA--DISTLEEALNAAKLGFDIIGTT 150 (219)
T ss_pred EeC-CCCC---C-C---CCcCHHHHHHHHHHHhCCeEEE--ECCCHHHHHHHHHcCCCEEEcc
Confidence 311 1100 0 0 0012233333333334 88888 8899999999999999998543
|
This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates. |
| >TIGR00693 thiE thiamine-phosphate pyrophosphorylase | Back alignment and domain information |
|---|
Probab=94.14 E-value=1.3 Score=42.31 Aligned_cols=112 Identities=15% Similarity=0.159 Sum_probs=72.4
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCchhhHH---HHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccC
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNSIYQI---EMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEY 406 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~~~~l---~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~ 406 (590)
...+.++.+++.|++.+++...+.+..... ..+..+.+.+ +.++++.+ ..+.+.+.|+|++ +.+..
T Consensus 14 ~~~~~~~~~~~~g~~~v~lR~~~~~~~~~~~~~~~l~~~~~~~-~~~l~i~~-----~~~la~~~g~~Gv----Hl~~~- 82 (196)
T TIGR00693 14 DLLNRVEAALKGGVTLVQLRDKGSNTRERLALAEKLQELCRRY-GVPFIVND-----RVDLALALGADGV----HLGQD- 82 (196)
T ss_pred cHHHHHHHHHhcCCCEEEEecCCCCHHHHHHHHHHHHHHHHHh-CCeEEEEC-----HHHHHHHcCCCEE----ecCcc-
Confidence 355678889999999998866543333333 3444444455 68888743 5667778999998 32211
Q ss_pred CCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccC
Q psy1056 407 PDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAG 464 (590)
Q Consensus 407 ~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~ 464 (590)
.. ....++.... -..+....+.|..++.+|..+|||++.+|+.|..
T Consensus 83 --------~~-~~~~~r~~~~---~~~~ig~s~h~~~e~~~a~~~g~dyi~~~~v~~t 128 (196)
T TIGR00693 83 --------DL-PASEARALLG---PDKIIGVSTHNLEELAEAEAEGADYIGFGPIFPT 128 (196)
T ss_pred --------cC-CHHHHHHhcC---CCCEEEEeCCCHHHHHHHhHcCCCEEEECCccCC
Confidence 00 0112232221 1234456899999999999999999999998853
|
This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI. |
| >PRK13957 indole-3-glycerol-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.091 Score=52.26 Aligned_cols=71 Identities=15% Similarity=0.134 Sum_probs=49.2
Q ss_pred cHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEE-ECc
Q psy1056 382 GYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAM-MGS 460 (590)
Q Consensus 382 ~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~-~g~ 460 (590)
.+-|+...++||.+|.| .+... + +|....-+..++. ..++||+.-+.|-++.++..|.++|||+|. +.+
T Consensus 64 ~~~A~~y~~~GA~aISV--lTe~~---~--F~Gs~~~l~~v~~---~v~~PvL~KDFIid~~QI~ea~~~GADavLLI~~ 133 (247)
T PRK13957 64 VQIAKTYETLGASAISV--LTDQS---Y--FGGSLEDLKSVSS---ELKIPVLRKDFILDEIQIREARAFGASAILLIVR 133 (247)
T ss_pred HHHHHHHHHCCCcEEEE--EcCCC---c--CCCCHHHHHHHHH---hcCCCEEeccccCCHHHHHHHHHcCCCEEEeEHh
Confidence 45677888999999944 33222 1 1114444444443 346999999999999999999999999993 334
Q ss_pred cc
Q psy1056 461 LL 462 (590)
Q Consensus 461 ~l 462 (590)
.|
T Consensus 134 ~L 135 (247)
T PRK13957 134 IL 135 (247)
T ss_pred hC
Confidence 44
|
|
| >COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.57 Score=46.69 Aligned_cols=113 Identities=23% Similarity=0.236 Sum_probs=68.5
Q ss_pred HHHHHHHcCCcEEEEecCCCch--hhHHHHHHHHH---HhCCCceEEe------ccc-----c----CcHHHHHHHHCCC
Q psy1056 334 RLKLLSQAGVDVVILDSSQGNS--IYQIEMIKFIK---KEYPDMQVIG------GNV-----L----FGYQPRATLLNFI 393 (590)
Q Consensus 334 ~~~~li~~gad~i~V~~~~G~~--~~~l~~i~~i~---~~~~~vpvi~------g~v-----~----s~~~a~~l~~~Gv 393 (590)
..+..+..|++++.++..-|.. ...++.+..+. ..| ++|+++ +.+ . ....++...+.|+
T Consensus 102 ~ve~ai~lgadAV~~~Vy~Gse~e~~~i~~~~~v~~~a~~~-Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGA 180 (265)
T COG1830 102 TVEDAIRLGADAVGATVYVGSETEREMIENISQVVEDAHEL-GMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGA 180 (265)
T ss_pred eHHHHHhCCCcEEEEEEecCCcchHHHHHHHHHHHHHHHHc-CCceEEEEeccCCcccccccccHHHHHHHHHHHHHhcC
Confidence 3556678899998777644322 22344444333 345 678774 122 2 2344557788999
Q ss_pred CEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCC-HHH-----HHHHHHcCCCEEEECccc
Q psy1056 394 YQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQS-VGH-----VMKALALGASTAMMGSLL 462 (590)
Q Consensus 394 d~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~-~~d-----i~kalalGA~~v~~g~~l 462 (590)
|.|++..-. ..++..++.+. .++||+.+||=++ +.+ +..|+..||..+.+||-+
T Consensus 181 DIiK~~ytg------------~~e~F~~vv~~---~~vpVviaGG~k~~~~~~~l~~~~~ai~aGa~G~~~GRNi 240 (265)
T COG1830 181 DIIKTKYTG------------DPESFRRVVAA---CGVPVVIAGGPKTETEREFLEMVTAAIEAGAMGVAVGRNI 240 (265)
T ss_pred CeEeecCCC------------ChHHHHHHHHh---CCCCEEEeCCCCCCChHHHHHHHHHHHHccCcchhhhhhh
Confidence 999652111 11223344443 4599999999888 322 234788899999999755
|
|
| >PRK06801 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.95 Score=46.29 Aligned_cols=124 Identities=13% Similarity=0.061 Sum_probs=78.5
Q ss_pred HHHHHHHHHcCCcEEEEecCCCchh-hH--HHHHHHHHHhCCCceEE--eccc-----------------cCcHHHHHHH
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGNSI-YQ--IEMIKFIKKEYPDMQVI--GGNV-----------------LFGYQPRATL 389 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~~~-~~--l~~i~~i~~~~~~vpvi--~g~v-----------------~s~~~a~~l~ 389 (590)
.+.+...++.|++.+.++.++-..+ .+ ...+..+.+.+ +++|= +|.+ .++++|+++.
T Consensus 87 ~e~i~~Ai~~GftSVm~D~S~l~~eeNi~~t~~v~~~a~~~-gv~VE~ElG~vgg~e~~v~~~~~~~~~~T~pe~a~~f~ 165 (286)
T PRK06801 87 FEAVVRALRLGFSSVMFDGSTLEYEENVRQTREVVKMCHAV-GVSVEAELGAVGGDEGGALYGEADSAKFTDPQLARDFV 165 (286)
T ss_pred HHHHHHHHHhCCcEEEEcCCCCCHHHHHHHHHHHHHHHHHc-CCeEEeecCcccCCCCCcccCCcccccCCCHHHHHHHH
Confidence 4556677888999998887664322 21 22233333333 44431 1111 1458889888
Q ss_pred -HCCCCEEEEcccccccCCCccccc-cchhHHHHHHHHHhcCCCcEEecCC--CCCHHHHHHHHHcCCCEEEECccc
Q psy1056 390 -LNFIYQIEMIKFIKKEYPDMQVIG-RNGTAVYRVAEYASRRGVPVIADGG--VQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 390 -~~Gvd~i~v~~~~~~~~~~~~~~g-~~~~~l~~~~~~~~~~~v~iia~GG--i~~~~di~kalalGA~~v~~g~~l 462 (590)
+.|+|++-+++.+++.. +.+.. +.+..+.++++ ..++|+++=|| |. ..++.++..+|++-|-+++.+
T Consensus 166 ~~tgvD~LAvaiGt~Hg~--y~~~~~l~~e~l~~i~~---~~~~PLVlHGGSgi~-~e~~~~~i~~Gi~KINv~T~~ 236 (286)
T PRK06801 166 DRTGIDALAVAIGNAHGK--YKGEPKLDFARLAAIHQ---QTGLPLVLHGGSGIS-DADFRRAIELGIHKINFYTGM 236 (286)
T ss_pred HHHCcCEEEeccCCCCCC--CCCCCCCCHHHHHHHHH---hcCCCEEEECCCCCC-HHHHHHHHHcCCcEEEehhHH
Confidence 79999998877766541 11111 13334444443 34699999887 74 678999999999999998877
|
|
| >PRK12655 fructose-6-phosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=93.76 E-value=1.8 Score=42.45 Aligned_cols=122 Identities=15% Similarity=0.134 Sum_probs=80.3
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCC
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPD 408 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~ 408 (590)
+...+.+..+.+.+-+ ++|-.+- ...| ++.++.++++ ++++-+=-|.|.++|..+..+|+++| ++..+|.
T Consensus 66 e~mi~eA~~l~~~~~n-v~IKIP~-T~~G-l~Ai~~L~~~--GI~vn~T~vfs~~Qa~~Aa~aGa~yI--spyvgR~--- 135 (220)
T PRK12655 66 QGMVEEAKRLRNAIPG-IVVKIPV-TAEG-LAAIKKLKKE--GIPTLGTAVYSAAQGLLAALAGAKYV--APYVNRV--- 135 (220)
T ss_pred HHHHHHHHHHHHhCCC-EEEEeCC-CHHH-HHHHHHHHHC--CCceeEeEecCHHHHHHHHHcCCeEE--EeecchH---
Confidence 3444556666665433 4443321 1123 6788888777 78887777889999999999999988 3334443
Q ss_pred cccccc-chhHHHHHHHHHhcC--CCcEEecCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 409 MQVIGR-NGTAVYRVAEYASRR--GVPVIADGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 409 ~~~~g~-~~~~l~~~~~~~~~~--~v~iia~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
.+.|. ....+.++.+..+.. +..|++ ..+|++.++..++.+|||.+-+...+
T Consensus 136 -~~~g~dg~~~i~~~~~~~~~~~~~tkILa-AS~r~~~~v~~~~~~G~d~vTip~~v 190 (220)
T PRK12655 136 -DAQGGDGIRMVQELQTLLEMHAPESMVLA-ASFKTPRQALDCLLAGCQSITLPLDV 190 (220)
T ss_pred -hHcCCCHHHHHHHHHHHHHhcCCCcEEEE-EecCCHHHHHHHHHcCCCEEECCHHH
Confidence 22344 444455565555443 344444 58999999999999999999887655
|
|
| >COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.65 E-value=1.8 Score=41.47 Aligned_cols=109 Identities=17% Similarity=0.088 Sum_probs=73.4
Q ss_pred HHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEE--ecc------c---cCcHHHHHHHHCCCCEEEEccc
Q psy1056 333 NRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVI--GGN------V---LFGYQPRATLLNFIYQIEMIKF 401 (590)
Q Consensus 333 e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi--~g~------v---~s~~~a~~l~~~Gvd~i~v~~~ 401 (590)
..+.+..+.|+-.+-++ -++.|+.++... ++|+| +|. | .+.++...|.++|++.|-+. +
T Consensus 37 ~mA~Aa~~gGAvgiR~~--------gv~dIkai~~~v-~vPIIGIiKrd~~~s~v~ITptlkeVd~L~~~Ga~IIA~D-a 106 (229)
T COG3010 37 AMALAAEQGGAVGIRIE--------GVEDIKAIRAVV-DVPIIGIIKRDYPDSPVRITPTLKEVDALAEAGADIIAFD-A 106 (229)
T ss_pred HHHHHHHhCCcceEeec--------chhhHHHHHhhC-CCCeEEEEecCCCCCCceecccHHHHHHHHHCCCcEEEee-c
Confidence 35566667787776542 256788888887 78887 331 1 27899999999999988442 3
Q ss_pred ccccCCCccccccchh-HHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccC
Q psy1056 402 IKKEYPDMQVIGRNGT-AVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAG 464 (590)
Q Consensus 402 ~~~~~~~~~~~g~~~~-~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~ 464 (590)
+.|.+ +. .+.++....+..+.-++| -+.|..|..-|..+|+|+| |+-|.+
T Consensus 107 T~R~R---------P~~~~~~~i~~~k~~~~l~MA--D~St~ee~l~a~~~G~D~I--GTTLsG 157 (229)
T COG3010 107 TDRPR---------PDGDLEELIARIKYPGQLAMA--DCSTFEEGLNAHKLGFDII--GTTLSG 157 (229)
T ss_pred ccCCC---------CcchHHHHHHHhhcCCcEEEe--ccCCHHHHHHHHHcCCcEE--eccccc
Confidence 33431 11 344444444444566777 5779999999999999998 554433
|
|
| >TIGR01163 rpe ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=93.61 E-value=1.2 Score=43.08 Aligned_cols=119 Identities=10% Similarity=-0.023 Sum_probs=75.1
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCch----hhHHHHHHHHHHhCCCceEE--eccccCcHHHHHHHHCCCCEEEEccccc
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNS----IYQIEMIKFIKKEYPDMQVI--GGNVLFGYQPRATLLNFIYQIEMIKFIK 403 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~----~~~l~~i~~i~~~~~~vpvi--~g~v~s~~~a~~l~~~Gvd~i~v~~~~~ 403 (590)
...+.++.+.+.|+|.++++...|.. ....+.++.+++.. +.|+. +.--...+.++.+.++|+|++.+....
T Consensus 12 ~~~~~~~~~~~~g~d~i~~~~~Dg~~~~~~~~~~~~v~~i~~~~-~~~v~v~lm~~~~~~~~~~~~~~gadgv~vh~~~- 89 (210)
T TIGR01163 12 RLGEEVKAVEEAGADWIHVDVMDGHFVPNLTFGPPVLEALRKYT-DLPIDVHLMVENPDRYIEDFAEAGADIITVHPEA- 89 (210)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCCCCCCcccCHHHHHHHHhcC-CCcEEEEeeeCCHHHHHHHHHHcCCCEEEEccCC-
Confidence 45678888999999999997443322 23367888888653 45542 111123456778889999998432111
Q ss_pred ccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 404 KEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 404 ~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
... .....+.++..++.++..-...++.+..++++.++|.+.+++..
T Consensus 90 -----------~~~-~~~~~~~~~~~g~~~~~~~~~~t~~e~~~~~~~~~d~i~~~~~~ 136 (210)
T TIGR01163 90 -----------SEH-IHRLLQLIKDLGAKAGIVLNPATPLEFLEYVLPDVDLVLLMSVN 136 (210)
T ss_pred -----------chh-HHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhhCCEEEEEEEc
Confidence 111 11222344444555555445678899999999999999877655
|
This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants. |
| >PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=93.61 E-value=6.2 Score=39.06 Aligned_cols=56 Identities=27% Similarity=0.288 Sum_probs=40.4
Q ss_pred CCcEEEEecCCCchhh-HHHHHHHHHHhCCCc-eEEec-cccCcHHHHHHHHCCCCEEEE
Q psy1056 342 GVDVVILDSSQGNSIY-QIEMIKFIKKEYPDM-QVIGG-NVLFGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 342 gad~i~V~~~~G~~~~-~l~~i~~i~~~~~~v-pvi~g-~v~s~~~a~~l~~~Gvd~i~v 398 (590)
|...+.+..+.+.... -.+.++.+++.. +. |+++| ++-+.++++++..+|||++.|
T Consensus 154 g~~~vYle~gs~~g~~~~~e~I~~v~~~~-~~~pvivGGGIrs~e~a~~~l~~GAD~VVV 212 (232)
T PRK04169 154 GMPIVYLEYGGGAGDPVPPEMVKAVKKAL-DITPLIYGGGIRSPEQARELMAAGADTIVV 212 (232)
T ss_pred CCCeEEEECCCCCCCCCCHHHHHHHHHhc-CCCcEEEECCCCCHHHHHHHHHhCCCEEEE
Confidence 6777777655433221 156788888876 45 88865 556999999999999999965
|
|
| >PRK12376 putative translaldolase; Provisional | Back alignment and domain information |
|---|
Probab=93.60 E-value=2.5 Score=41.95 Aligned_cols=123 Identities=12% Similarity=0.109 Sum_probs=80.1
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCchh--hHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHC----CCCEEEEccccc
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNSI--YQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLN----FIYQIEMIKFIK 403 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~~--~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~----Gvd~i~v~~~~~ 403 (590)
...+.+..+.+.+-+ +.|-.+--..+ .-++.++.+.+. ++++-+--|.|..++..+.++ |+++| ++..+
T Consensus 72 ~mv~eA~~l~~~~~n-v~VKIP~T~~~G~~gl~Ai~~L~~~--GI~vn~T~vfs~~Qa~~a~~A~ag~ga~yi--spfvg 146 (236)
T PRK12376 72 TMEKEAEKIASLGEN-VYVKIPITNTKGESTIPLIKKLSAD--GVKLNVTAIFTIEQVKEVVDALTPGVPAIV--SVFAG 146 (236)
T ss_pred HHHHHHHHHHHhCCC-eEEEECCcCccchhHHHHHHHHHHC--CCeEEEeeecCHHHHHHHHHHhcCCCCeEE--EEecc
Confidence 344556666666544 33332211111 126678888777 788877678899999866665 68887 44444
Q ss_pred ccCCCcccccc-chhHHHHHHHHHhcC-CCcEEecCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 404 KEYPDMQVIGR-NGTAVYRVAEYASRR-GVPVIADGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 404 ~~~~~~~~~g~-~~~~l~~~~~~~~~~-~v~iia~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
|- .+.|. ....+.++++..... +..|++ .-+|++.++.+|+.+|||.+-++.-+
T Consensus 147 R~----dd~g~D~~~~i~~i~~i~~~~~~tkILa-ASiR~~~~v~~a~~~Gad~vTvp~~v 202 (236)
T PRK12376 147 RI----ADTGVDPVPLMKEALAICHSKPGVELLW-ASPREVYNIIQADQLGCDIITVTPDV 202 (236)
T ss_pred hh----hhcCCCcHHHHHHHHHHHHhCCCcEEEE-EecCCHHHHHHHHHcCCCEEEcCHHH
Confidence 43 34566 555566666665432 455655 57999999999999999999888655
|
|
| >PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.51 Score=49.45 Aligned_cols=125 Identities=14% Similarity=0.058 Sum_probs=66.7
Q ss_pred HHHHHHcCCcEEEEecCCC---c---hhhHHHHHHH---HHHhCCCceEEeccc-c--------------------CcHH
Q psy1056 335 LKLLSQAGVDVVILDSSQG---N---SIYQIEMIKF---IKKEYPDMQVIGGNV-L--------------------FGYQ 384 (590)
Q Consensus 335 ~~~li~~gad~i~V~~~~G---~---~~~~l~~i~~---i~~~~~~vpvi~g~v-~--------------------s~~~ 384 (590)
++.+++.|+|++-+...-+ . .......+.. -...+ ++|+++ ++ . -...
T Consensus 112 ve~a~~~GAdAVk~lv~~~~d~~~~~~~~~~~~l~rv~~ec~~~-giPlll-E~l~y~~~~~~~~~~~~a~~~p~~V~~a 189 (340)
T PRK12858 112 VRRIKEAGADAVKLLLYYRPDEDDAINDRKHAFVERVGAECRAN-DIPFFL-EPLTYDGKGSDKKAEEFAKVKPEKVIKT 189 (340)
T ss_pred HHHHHHcCCCEEEEEEEeCCCcchHHHHHHHHHHHHHHHHHHHc-CCceEE-EEeccCCCccccccccccccCHHHHHHH
Confidence 4567889999887654321 1 1122223333 33344 788765 21 0 1234
Q ss_pred HHHHHH--CCCCEEEEcccccccC-CCccc--cccc-hhHHHHHHHHHhcCCCcEEe-cCCCCCHHHHH----HHHHcCC
Q psy1056 385 PRATLL--NFIYQIEMIKFIKKEY-PDMQV--IGRN-GTAVYRVAEYASRRGVPVIA-DGGVQSVGHVM----KALALGA 453 (590)
Q Consensus 385 a~~l~~--~Gvd~i~v~~~~~~~~-~~~~~--~g~~-~~~l~~~~~~~~~~~v~iia-~GGi~~~~di~----kalalGA 453 (590)
++.+.+ +|||.+++.....-.. .|+.+ .-++ .++...+.+.....++|+|. +||. +..+.. .|+..||
T Consensus 190 ~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~~~P~vvlsgG~-~~~~f~~~l~~A~~aGa 268 (340)
T PRK12858 190 MEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDATDLPFIFLSAGV-SPELFRRTLEFACEAGA 268 (340)
T ss_pred HHHHhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhCCCCEEEECCCC-CHHHHHHHHHHHHHcCC
Confidence 566774 9999998833222110 01110 0111 21222344444445688666 8887 555444 4778899
Q ss_pred --CEEEECccc
Q psy1056 454 --STAMMGSLL 462 (590)
Q Consensus 454 --~~v~~g~~l 462 (590)
..|.+||..
T Consensus 269 ~f~Gvl~GRni 279 (340)
T PRK12858 269 DFSGVLCGRAT 279 (340)
T ss_pred CccchhhhHHH
Confidence 999999866
|
|
| >COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.081 Score=54.76 Aligned_cols=64 Identities=23% Similarity=0.347 Sum_probs=57.7
Q ss_pred ccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCC-CceEEEEeecccccccCCCC
Q psy1056 247 DLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDK-GELIALIARTDLKKSRDYPD 310 (590)
Q Consensus 247 ~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~-g~l~Giit~~dll~~~~~~~ 310 (590)
..+|+|+|+++.++..+..+++.+++.+.+...-+.++|+..++ ++++|++..+|+++......
T Consensus 199 ~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~ 263 (423)
T COG4536 199 NLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKN 263 (423)
T ss_pred cceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccC
Confidence 47899999999999999999999999999999999999998654 77999999999999876443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 590 | ||||
| 1b3o_A | 514 | Ternary Complex Of Human Type-Ii Inosine Monophosph | 1e-145 | ||
| 1jr1_A | 514 | Crystal Structure Of Inosine Monophosphate Dehydrog | 1e-144 | ||
| 1jcn_A | 514 | Binary Complex Of Human Type-I Inosine Monophosphat | 1e-144 | ||
| 4af0_B | 556 | Crystal Structure Of Cryptococcal Inosine Monophosp | 1e-114 | ||
| 4af0_A | 556 | Crystal Structure Of Cryptococcal Inosine Monophosp | 1e-113 | ||
| 3tsb_A | 511 | Crystal Structure Of Inosine-5'-Monophosphate Dehyd | 3e-56 | ||
| 1vrd_A | 494 | Crystal Structure Of Inosine-5'-Monophosphate Dehyd | 3e-56 | ||
| 4fxs_A | 496 | Inosine 5'-Monophosphate Dehydrogenase From Vibrio | 1e-51 | ||
| 3usb_A | 511 | Crystal Structure Of Bacillus Anthracis Inosine Mon | 3e-50 | ||
| 2cu0_A | 486 | Crystal Structure Of Inosine-5'-Monophosphate Dehyd | 1e-48 | ||
| 3zfh_A | 510 | Crystal Structure Of Pseudomonas Aeruginosa Inosine | 4e-48 | ||
| 4avf_A | 490 | Crystal Structure Of Pseudomonas Aeruginosa Inosine | 5e-48 | ||
| 1zfj_A | 491 | Inosine Monophosphate Dehydrogenase (Impdh; Ec 1.1. | 1e-43 | ||
| 4fez_A | 388 | Inosine 5'-Monophosphate Dehydrogenase From Vibrio | 1e-37 | ||
| 4fo4_A | 366 | Inosine 5'-Monophosphate Dehydrogenase From Vibrio | 4e-33 | ||
| 1eep_A | 404 | 2.4 A Resolution Crystal Structure Of Borrelia Burg | 1e-32 | ||
| 3ffs_A | 400 | The Crystal Structure Of Cryptosporidium Parvum Ino | 2e-29 | ||
| 1me8_A | 503 | Inosine Monophosphate Dehydrogenase (Impdh) From Tr | 4e-29 | ||
| 1me7_A | 503 | Inosine Monophosphate Dehydrogenase (Impdh) From Tr | 1e-28 | ||
| 3khj_A | 361 | C. Parvum Inosine Monophosphate Dehydrogenase Bound | 1e-27 | ||
| 3r2g_A | 361 | Crystal Structure Of Inosine 5' Monophosphate Dehyd | 4e-15 | ||
| 2a7r_A | 366 | Crystal Structure Of Human Guanosine Monophosphate | 1e-14 | ||
| 2bzn_A | 351 | Crystal Structure Of Human Guanosine Monophosphate | 2e-14 | ||
| 2ble_A | 367 | Structure Of Human Guanosine Monophosphate Reductas | 4e-13 | ||
| 1pvn_A | 376 | The Crystal Structure Of The Complex Between Imp De | 5e-12 | ||
| 1lrt_A | 376 | Crystal Structure Of Ternary Complex Of Tritrichomo | 7e-12 | ||
| 1ypf_A | 336 | Crystal Structure Of Guac (Ba5705) From Bacillus An | 8e-12 | ||
| 3kh5_A | 280 | Crystal Structure Of Protein Mj1225 From Methanocal | 2e-05 | ||
| 2qr6_A | 393 | Crystal Structure Of Imp DehydrogenaseGMP REDUCTASE | 3e-04 |
| >pdb|1B3O|A Chain A, Ternary Complex Of Human Type-Ii Inosine Monophosphate Dehydrogenase With 6-Cl-Imp And Selenazole Adenine Dinucleotide Length = 514 | Back alignment and structure |
|
| >pdb|1JR1|A Chain A, Crystal Structure Of Inosine Monophosphate Dehydrogenase In Complex With Mycophenolic Acid Length = 514 | Back alignment and structure |
|
| >pdb|1JCN|A Chain A, Binary Complex Of Human Type-I Inosine Monophosphate Dehydrogenase With 6-Cl-Imp Length = 514 | Back alignment and structure |
|
| >pdb|4AF0|B Chain B, Crystal Structure Of Cryptococcal Inosine Monophosphate Dehydrogenase Length = 556 | Back alignment and structure |
|
| >pdb|4AF0|A Chain A, Crystal Structure Of Cryptococcal Inosine Monophosphate Dehydrogenase Length = 556 | Back alignment and structure |
|
| >pdb|3TSB|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate Dehydrogenase From Bacillus Anthracis Str. Ames Length = 511 | Back alignment and structure |
|
| >pdb|1VRD|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate Dehydrogenase (Tm1347) From Thermotoga Maritima At 2.18 A Resolution Length = 494 | Back alignment and structure |
|
| >pdb|4FXS|A Chain A, Inosine 5'-Monophosphate Dehydrogenase From Vibrio Cholerae Complexed With Imp And Mycophenolic Acid Length = 496 | Back alignment and structure |
|
| >pdb|3USB|A Chain A, Crystal Structure Of Bacillus Anthracis Inosine Monophosphate Dehydrogenase In The Complex With Imp Length = 511 | Back alignment and structure |
|
| >pdb|2CU0|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate Dehydrogenase From Pyrococcus Horikoshii Ot3 Length = 486 | Back alignment and structure |
|
| >pdb|3ZFH|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-monophosphate Dehydrogenase Length = 510 | Back alignment and structure |
|
| >pdb|4AVF|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'- Monophosphate Dehydrogenase Length = 490 | Back alignment and structure |
|
| >pdb|1ZFJ|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh; Ec 1.1.1.205) From Streptococcus Pyogenes Length = 491 | Back alignment and structure |
|
| >pdb|4FEZ|A Chain A, Inosine 5'-Monophosphate Dehydrogenase From Vibrio Cholerae, Deletion Mutant Length = 388 | Back alignment and structure |
|
| >pdb|4FO4|A Chain A, Inosine 5'-Monophosphate Dehydrogenase From Vibrio Cholerae, Deletion Mutant, Complexed With Imp And Mycophenolic Acid Length = 366 | Back alignment and structure |
|
| >pdb|1EEP|A Chain A, 2.4 A Resolution Crystal Structure Of Borrelia Burgdorferi Inosine 5'- Monphosphate Dehydrogenase In Complex With A Sulfate Ion Length = 404 | Back alignment and structure |
|
| >pdb|3FFS|A Chain A, The Crystal Structure Of Cryptosporidium Parvum Inosine-5'- Monophosphate Dehydrogenase Length = 400 | Back alignment and structure |
|
| >pdb|1ME8|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From Tritrichomonas Foetus With Rvp Bound Length = 503 | Back alignment and structure |
|
| >pdb|1ME7|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From Tritrichomonas Foetus With Rvp And Moa Bound Length = 503 | Back alignment and structure |
|
| >pdb|3KHJ|A Chain A, C. Parvum Inosine Monophosphate Dehydrogenase Bound By Inhibitor C64 Length = 361 | Back alignment and structure |
|
| >pdb|3R2G|A Chain A, Crystal Structure Of Inosine 5' Monophosphate Dehydrogenase From Legionella Pneumophila Length = 361 | Back alignment and structure |
|
| >pdb|2A7R|A Chain A, Crystal Structure Of Human Guanosine Monophosphate Reductase 2 (Gmpr2) Length = 366 | Back alignment and structure |
|
| >pdb|2BZN|A Chain A, Crystal Structure Of Human Guanosine Monophosphate Reductase 2 Gmpr2 In Complex With Imp Length = 351 | Back alignment and structure |
|
| >pdb|2BLE|A Chain A, Structure Of Human Guanosine Monophosphate Reductase Gmpr1 In Complex With Gmp Length = 367 | Back alignment and structure |
|
| >pdb|1PVN|A Chain A, The Crystal Structure Of The Complex Between Imp Dehydrogenase Catalytic Domain And A Transition State Analogue Mzp Length = 376 | Back alignment and structure |
|
| >pdb|1LRT|A Chain A, Crystal Structure Of Ternary Complex Of Tritrichomonas Foetus Inosine-5'-Monophosphate Dehydrogenase: Structural Characterization Of Nad+ Site In Microbial Enzyme Length = 376 | Back alignment and structure |
|
| >pdb|1YPF|A Chain A, Crystal Structure Of Guac (Ba5705) From Bacillus Anthracis At 1.8 A Resolution Length = 336 | Back alignment and structure |
|
| >pdb|3KH5|A Chain A, Crystal Structure Of Protein Mj1225 From Methanocaldococcus Jannaschii, A Putative Archaeal Homolog Of G-Ampk. Length = 280 | Back alignment and structure |
|
| >pdb|2QR6|A Chain A, Crystal Structure Of Imp DehydrogenaseGMP REDUCTASE-Like Protein (Np_599840.1) From Corynebacterium Glutamicum Atcc 13032 Kitasato At 1.50 A Resolution Length = 393 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 590 | |||
| 1jcn_A | 514 | Inosine monophosphate dehydrogenase I; IMPD, IMPDH | 1e-175 | |
| 1jcn_A | 514 | Inosine monophosphate dehydrogenase I; IMPD, IMPDH | 2e-80 | |
| 1jcn_A | 514 | Inosine monophosphate dehydrogenase I; IMPD, IMPDH | 2e-18 | |
| 1me8_A | 503 | Inosine-5'-monophosphate dehydrogenase; alpha beta | 1e-109 | |
| 1me8_A | 503 | Inosine-5'-monophosphate dehydrogenase; alpha beta | 4e-51 | |
| 1vrd_A | 494 | Inosine-5'-monophosphate dehydrogenase; TM1347, st | 1e-100 | |
| 1vrd_A | 494 | Inosine-5'-monophosphate dehydrogenase; TM1347, st | 1e-49 | |
| 3usb_A | 511 | Inosine-5'-monophosphate dehydrogenase; structural | 2e-99 | |
| 3usb_A | 511 | Inosine-5'-monophosphate dehydrogenase; structural | 2e-48 | |
| 2cu0_A | 486 | Inosine-5'-monophosphate dehydrogenase; structural | 7e-96 | |
| 2cu0_A | 486 | Inosine-5'-monophosphate dehydrogenase; structural | 4e-39 | |
| 4fxs_A | 496 | Inosine-5'-monophosphate dehydrogenase; structural | 4e-82 | |
| 4fxs_A | 496 | Inosine-5'-monophosphate dehydrogenase; structural | 2e-49 | |
| 4fxs_A | 496 | Inosine-5'-monophosphate dehydrogenase; structural | 1e-14 | |
| 1zfj_A | 491 | Inosine monophosphate dehydrogenase; IMPDH, CBS do | 9e-82 | |
| 1zfj_A | 491 | Inosine monophosphate dehydrogenase; IMPDH, CBS do | 1e-48 | |
| 1zfj_A | 491 | Inosine monophosphate dehydrogenase; IMPDH, CBS do | 1e-14 | |
| 1eep_A | 404 | Inosine 5'-monophosphate dehydrogenase; alpha-beta | 7e-63 | |
| 1eep_A | 404 | Inosine 5'-monophosphate dehydrogenase; alpha-beta | 1e-22 | |
| 1eep_A | 404 | Inosine 5'-monophosphate dehydrogenase; alpha-beta | 2e-12 | |
| 4fo4_A | 366 | Inosine 5'-monophosphate dehydrogenase; structural | 4e-57 | |
| 4fo4_A | 366 | Inosine 5'-monophosphate dehydrogenase; structural | 9e-32 | |
| 3ffs_A | 400 | Inosine-5-monophosphate dehydrogenase; beta-alpha | 5e-57 | |
| 3ffs_A | 400 | Inosine-5-monophosphate dehydrogenase; beta-alpha | 5e-22 | |
| 3r2g_A | 361 | Inosine 5'-monophosphate dehydrogenase; structural | 8e-57 | |
| 3r2g_A | 361 | Inosine 5'-monophosphate dehydrogenase; structural | 8e-33 | |
| 2c6q_A | 351 | GMP reductase 2; TIM barrel, metal-binding, NADP, | 1e-56 | |
| 2c6q_A | 351 | GMP reductase 2; TIM barrel, metal-binding, NADP, | 5e-30 | |
| 3khj_A | 361 | Inosine-5-monophosphate dehydrogenase; enzyme-inhi | 7e-53 | |
| 3khj_A | 361 | Inosine-5-monophosphate dehydrogenase; enzyme-inhi | 2e-27 | |
| 1ypf_A | 336 | GMP reductase; GUAC, purines, pyrimidines, nucleos | 3e-50 | |
| 1ypf_A | 336 | GMP reductase; GUAC, purines, pyrimidines, nucleos | 1e-29 | |
| 2qr6_A | 393 | IMP dehydrogenase/GMP reductase; NP_599840.1, G re | 6e-36 | |
| 2qr6_A | 393 | IMP dehydrogenase/GMP reductase; NP_599840.1, G re | 2e-15 | |
| 2yzq_A | 282 | Putative uncharacterized protein PH1780; sheet/hel | 9e-30 | |
| 2yzq_A | 282 | Putative uncharacterized protein PH1780; sheet/hel | 3e-21 | |
| 3kh5_A | 280 | Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a | 1e-20 | |
| 3kh5_A | 280 | Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a | 5e-08 | |
| 3kh5_A | 280 | Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a | 3e-07 | |
| 3kh5_A | 280 | Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a | 1e-06 | |
| 3ddj_A | 296 | CBS domain-containing protein; structural genomics | 2e-19 | |
| 3ddj_A | 296 | CBS domain-containing protein; structural genomics | 2e-13 | |
| 1vr9_A | 213 | CBS domain protein/ACT domain protein; structural | 3e-19 | |
| 1vr9_A | 213 | CBS domain protein/ACT domain protein; structural | 4e-06 | |
| 3kpb_A | 122 | Uncharacterized protein MJ0100; CBS domain, S-aden | 7e-18 | |
| 3kpb_A | 122 | Uncharacterized protein MJ0100; CBS domain, S-aden | 4e-09 | |
| 2ef7_A | 133 | Hypothetical protein ST2348; CBS-domain, structura | 2e-16 | |
| 2ef7_A | 133 | Hypothetical protein ST2348; CBS-domain, structura | 7e-08 | |
| 2qrd_G | 334 | Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, | 2e-16 | |
| 2qrd_G | 334 | Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, | 7e-11 | |
| 3fv6_A | 159 | YQZB protein; CBS domain dimer, metabolism regulat | 7e-14 | |
| 3fv6_A | 159 | YQZB protein; CBS domain dimer, metabolism regulat | 3e-05 | |
| 3fv6_A | 159 | YQZB protein; CBS domain dimer, metabolism regulat | 6e-04 | |
| 1pvm_A | 184 | Conserved hypothetical protein TA0289; structural | 9e-14 | |
| 1pvm_A | 184 | Conserved hypothetical protein TA0289; structural | 2e-07 | |
| 2p9m_A | 138 | Hypothetical protein MJ0922; structural genomics, | 1e-13 | |
| 2p9m_A | 138 | Hypothetical protein MJ0922; structural genomics, | 2e-08 | |
| 2o16_A | 160 | Acetoin utilization protein ACUB, putative; struct | 5e-13 | |
| 2o16_A | 160 | Acetoin utilization protein ACUB, putative; struct | 2e-09 | |
| 2o16_A | 160 | Acetoin utilization protein ACUB, putative; struct | 2e-04 | |
| 2o16_A | 160 | Acetoin utilization protein ACUB, putative; struct | 2e-04 | |
| 2v8q_E | 330 | 5'-AMP-activated protein kinase subunit gamma-1; p | 6e-13 | |
| 2v8q_E | 330 | 5'-AMP-activated protein kinase subunit gamma-1; p | 1e-05 | |
| 3t4n_C | 323 | Nuclear protein SNF4; CBS domain, nucleotide bindi | 1e-12 | |
| 3t4n_C | 323 | Nuclear protein SNF4; CBS domain, nucleotide bindi | 3e-10 | |
| 3t4n_C | 323 | Nuclear protein SNF4; CBS domain, nucleotide bindi | 1e-06 | |
| 2uv4_A | 152 | 5'-AMP-activated protein kinase subunit gamma-1; t | 2e-11 | |
| 2uv4_A | 152 | 5'-AMP-activated protein kinase subunit gamma-1; t | 1e-08 | |
| 2nyc_A | 144 | Nuclear protein SNF4; bateman2 domain, AMP kinase, | 3e-11 | |
| 2nyc_A | 144 | Nuclear protein SNF4; bateman2 domain, AMP kinase, | 1e-07 | |
| 1y0e_A | 223 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 3e-11 | |
| 1y0e_A | 223 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 1e-06 | |
| 1pbj_A | 125 | Hypothetical protein; structural genomics, domain, | 4e-11 | |
| 1pbj_A | 125 | Hypothetical protein; structural genomics, domain, | 6e-07 | |
| 1pbj_A | 125 | Hypothetical protein; structural genomics, domain, | 3e-05 | |
| 3gby_A | 128 | Uncharacterized protein CT1051; CBS domain, struct | 2e-10 | |
| 3gby_A | 128 | Uncharacterized protein CT1051; CBS domain, struct | 5e-04 | |
| 1o50_A | 157 | CBS domain-containing predicted protein TM0935; CB | 4e-10 | |
| 1o50_A | 157 | CBS domain-containing predicted protein TM0935; CB | 5e-08 | |
| 2rih_A | 141 | Conserved protein with 2 CBS domains; bateman doma | 7e-10 | |
| 2rih_A | 141 | Conserved protein with 2 CBS domains; bateman doma | 2e-06 | |
| 2rc3_A | 135 | CBS domain; in SITU proteolysis, BR, structural ge | 2e-09 | |
| 2rc3_A | 135 | CBS domain; in SITU proteolysis, BR, structural ge | 7e-06 | |
| 2rc3_A | 135 | CBS domain; in SITU proteolysis, BR, structural ge | 1e-04 | |
| 2emq_A | 157 | Hypothetical conserved protein; CBS domains, NPPSF | 3e-09 | |
| 2emq_A | 157 | Hypothetical conserved protein; CBS domains, NPPSF | 3e-05 | |
| 2emq_A | 157 | Hypothetical conserved protein; CBS domains, NPPSF | 1e-04 | |
| 1yxy_A | 234 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 3e-09 | |
| 1yxy_A | 234 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 6e-07 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 5e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-06 | |
| 2yzi_A | 138 | Hypothetical protein PH0107; sheet/helix/sheet/she | 1e-08 | |
| 2yzi_A | 138 | Hypothetical protein PH0107; sheet/helix/sheet/she | 2e-05 | |
| 2yzi_A | 138 | Hypothetical protein PH0107; sheet/helix/sheet/she | 8e-05 | |
| 3ctu_A | 156 | CBS domain protein; structural genomics, PSI-2, pr | 2e-08 | |
| 3ctu_A | 156 | CBS domain protein; structural genomics, PSI-2, pr | 5e-05 | |
| 3ctu_A | 156 | CBS domain protein; structural genomics, PSI-2, pr | 2e-04 | |
| 4fry_A | 157 | Putative signal-transduction protein with CBS DOM; | 3e-08 | |
| 4fry_A | 157 | Putative signal-transduction protein with CBS DOM; | 3e-06 | |
| 4fry_A | 157 | Putative signal-transduction protein with CBS DOM; | 3e-04 | |
| 3lqn_A | 150 | CBS domain protein; csgid, structural genomics, un | 4e-08 | |
| 3lqn_A | 150 | CBS domain protein; csgid, structural genomics, un | 9e-05 | |
| 3lqn_A | 150 | CBS domain protein; csgid, structural genomics, un | 6e-04 | |
| 1y5h_A | 133 | Hypothetical protein RV2626C; CBS domain, unknown | 5e-08 | |
| 1y5h_A | 133 | Hypothetical protein RV2626C; CBS domain, unknown | 2e-05 | |
| 1y5h_A | 133 | Hypothetical protein RV2626C; CBS domain, unknown | 1e-04 | |
| 3igs_A | 232 | N-acetylmannosamine-6-phosphate 2-epimerase 2; ene | 6e-08 | |
| 1yav_A | 159 | Hypothetical protein BSU14130; cystathionine beta | 7e-08 | |
| 1yav_A | 159 | Hypothetical protein BSU14130; cystathionine beta | 2e-04 | |
| 1yav_A | 159 | Hypothetical protein BSU14130; cystathionine beta | 7e-04 | |
| 3fhm_A | 165 | Uncharacterized protein ATU1752; CBS domain, proka | 9e-08 | |
| 3fhm_A | 165 | Uncharacterized protein ATU1752; CBS domain, proka | 9e-05 | |
| 3fhm_A | 165 | Uncharacterized protein ATU1752; CBS domain, proka | 2e-04 | |
| 3q58_A | 229 | N-acetylmannosamine-6-phosphate 2-epimerase; TIM b | 4e-07 | |
| 3sl7_A | 180 | CBS domain-containing protein CBSX2; CBS-PAIR prot | 2e-06 | |
| 3sl7_A | 180 | CBS domain-containing protein CBSX2; CBS-PAIR prot | 1e-05 | |
| 3l2b_A | 245 | Probable manganase-dependent inorganic pyrophospha | 4e-06 | |
| 2pfi_A | 164 | Chloride channel protein CLC-Ka; cystathionine bet | 1e-05 | |
| 2pfi_A | 164 | Chloride channel protein CLC-Ka; cystathionine bet | 4e-05 | |
| 2pfi_A | 164 | Chloride channel protein CLC-Ka; cystathionine bet | 1e-04 | |
| 3fio_A | 70 | A cystathionine beta-synthase domain protein fused | 3e-05 | |
| 3vkj_A | 368 | Isopentenyl-diphosphate delta-isomerase; type 2 is | 4e-05 | |
| 1p4c_A | 380 | L(+)-mandelate dehydrogenase; TIM barrel, hydroxy | 4e-05 | |
| 1vcf_A | 332 | Isopentenyl-diphosphate delta-isomerase; TIM barre | 4e-05 | |
| 1p0k_A | 349 | Isopentenyl-diphosphate delta-isomerase; terpene b | 7e-05 | |
| 1kbi_A | 511 | Cytochrome B2, L-LCR; flavocytochrome B2, electron | 7e-05 | |
| 2nli_A | 368 | Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid | 8e-05 | |
| 1gox_A | 370 | (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu | 8e-05 | |
| 2nzl_A | 392 | Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G | 9e-05 | |
| 3sr7_A | 365 | Isopentenyl-diphosphate delta-isomerase; isopenten | 1e-04 | |
| 2j9l_A | 185 | Chloride channel protein 5; ION channel, ION trans | 1e-04 | |
| 3sgz_A | 352 | Hydroxyacid oxidase 2; flavoprotein, homology, INH | 2e-04 |
| >1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* Length = 514 | Back alignment and structure |
|---|
Score = 504 bits (1301), Expect = e-175
Identities = 242/396 (61%), Positives = 298/396 (75%), Gaps = 34/396 (8%)
Query: 211 HGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLE 270
HGF G P+TE G +G KL+GIVTSRD+DFL + + +VMT E++ A AG++L+
Sbjct: 137 HGFSGIPITETGTMGSKLVGIVTSRDIDFLAEK-DHTTLLSEVMTPRIELVVAPAGVTLK 195
Query: 271 EANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREA 330
EAN IL++SKKGKLPI+ND EL+A+IARTDLKK+RDYP +SKD QL+ GAA+GTRE
Sbjct: 196 EANEILQRSKKGKLPIVNDCDELVAIIARTDLKKNRDYPLASKDSQKQLLCGAAVGTRED 255
Query: 331 DKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLL 390
DK RL LL+QAGVDV++LDSSQGNS+YQI M+ +IK++YP +QVIGGNV+ Q + L+
Sbjct: 256 DKYRLDLLTQAGVDVIVLDSSQGNSVYQIAMVHYIKQKYPHLQVIGGNVVTAAQAKN-LI 314
Query: 391 NF---------------IYQIEMIKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVI 434
+ I Q M GR GTAVY+VAEYA R GVP+I
Sbjct: 315 DAGVDGLRVGMGCGSICITQEVM------------ACGRPQGTAVYKVAEYARRFGVPII 362
Query: 435 ADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSR 494
ADGG+Q+VGHV+KALALGAST MMGSLLA T+EAPGEYFFSDGVRLKKYRGMGSL+AM +
Sbjct: 363 ADGGIQTVGHVVKALALGASTVMMGSLLAATTEAPGEYFFSDGVRLKKYRGMGSLDAMEK 422
Query: 495 KDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSN 554
RYF +E DK+K+AQGVSG+I DKGS+ +F+PYL G++HGCQDIGA+SLS
Sbjct: 423 SSSSQ---KRYF-SEGDKVKIAQGVSGSIQDKGSIQKFVPYLIAGIQHGCQDIGARSLSV 478
Query: 555 LRAMMYSGELKFEKRTLCAQNEGSVHGLYSYEKRLF 590
LR+MMYSGELKFEKRT+ AQ EG VHGL+SYEKRL+
Sbjct: 479 LRSMMYSGELKFEKRTMSAQIEGGVHGLHSYEKRLY 514
|
| >1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* Length = 514 | Back alignment and structure |
|---|
Score = 261 bits (669), Expect = 2e-80
Identities = 123/244 (50%), Positives = 151/244 (61%), Gaps = 47/244 (19%)
Query: 1 IIHHNCTPEYQANEVLKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGK 60
IHHNCTPE+QANEV KVK ++ GFI DPV ++PS T+G VL+ K +HGF G P+TE G
Sbjct: 90 FIHHNCTPEFQANEVRKVKNFEQGFITDPVVLSPSHTVGDVLEAKMRHGFSGIPITETGT 149
Query: 61 LGEKLLGIVTSRDVDFLENSANMDLKIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAI 120
+G KL+GIVTSRD+DFL EKD ++ L++ +T LV +P + I
Sbjct: 150 MGSKLVGIVTSRDIDFLA---------EKDHTTLLSEVMTPRIELVVAPAGVTLKEANEI 200
Query: 121 --------------AMALCGGI------------------------GAAIGTREADKYRL 142
L I GAA+GTRE DKYRL
Sbjct: 201 LQRSKKGKLPIVNDCDELVAIIARTDLKKNRDYPLASKDSQKQLLCGAAVGTREDDKYRL 260
Query: 143 KLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDG 202
LL+QAGVDV++LDSSQGNS+YQI M+ YIK++YP +QVIGGNVVT QAKNLIDAGVDG
Sbjct: 261 DLLTQAGVDVIVLDSSQGNSVYQIAMVHYIKQKYPHLQVIGGNVVTAAQAKNLIDAGVDG 320
Query: 203 LRVG 206
LRVG
Sbjct: 321 LRVG 324
|
| >1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* Length = 514 | Back alignment and structure |
|---|
Score = 87.6 bits (218), Expect = 2e-18
Identities = 33/42 (78%), Positives = 37/42 (88%)
Query: 88 EKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIG 129
E DL+S LT+KITL PL+SSPMDTVTE+DMAIAMAL GGIG
Sbjct: 48 EVDLTSALTRKITLKTPLISSPMDTVTEADMAIAMALMGGIG 89
|
| >1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* Length = 503 | Back alignment and structure |
|---|
Score = 334 bits (859), Expect = e-109
Identities = 131/502 (26%), Positives = 204/502 (40%), Gaps = 94/502 (18%)
Query: 88 EKDLSSPLTK-------KITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKY 140
+LS+PL K +I L PLVS+ M +V+ MAIA+A GGI
Sbjct: 30 NVNLSTPLVKFQKGQQSEINLKIPLVSAIMQSVSGEKMAIALAREGGIS----------- 78
Query: 141 RLKLLSQAGVDVVILDSSQGN-SI-YQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDA 198
I G+ SI Q M+ +K V + + D
Sbjct: 79 ------------FI----FGSQSIESQAAMVHAVKNFKAGFVV---SDSNVKPDQTFADV 119
Query: 199 GVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVN 258
L + VT++G LLG+VT RD + K+ +MT +
Sbjct: 120 ----LAISQR--TTHNTVAVTDDGTPHGVLLGLVTQRDYPIDLT--QTETKVSDMMTPFS 171
Query: 259 EIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQ 318
++++A L EAN I+ + K LPI++D L ++ R D +S+ + D +
Sbjct: 172 KLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIVFRKDYDRSQVCHNELVDSQKR 231
Query: 319 LIVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPD-MQVIGG 377
+VGA I TR+ + R+ L +AG DV+ +DSS G S +Q I +I+++Y D ++V G
Sbjct: 232 YLVGAGINTRDFRE-RVPALVEAGADVLCIDSSDGFSEWQKITIGWIREKYGDKVKVGAG 290
Query: 378 NVLFGYQPRATLLNFIYQIEM-IKFIKKEYPDMQV---------------IGR-NGTAVY 420
N+ F Y + FIK + IGR TAV
Sbjct: 291 NI-------VDGEGFRYLADAGADFIK-------IGIGGGSICITREQKGIGRGQATAVI 336
Query: 421 RVAEYASR------RGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFF 474
V ++ +PV +DGG+ H+ ALA+GA M+G A E+P
Sbjct: 337 DVVAERNKYFEETGIYIPVCSDGGIVYDYHMTLALAMGADFIMLGRYFARFEESPTRKVT 396
Query: 475 SDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLP 534
+G +K+Y G GS A + RY KL +GV + G + +
Sbjct: 397 INGSVMKEYWGEGSSRARNW--------QRYDLGGKQKLSFEEGVDSYVPYAGKLKDNVE 448
Query: 535 YLQCGLKHGCQDIGAKSLSNLR 556
+K + GA ++ L+
Sbjct: 449 ASLNKVKSTMCNCGALTIPQLQ 470
|
| >1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* Length = 503 | Back alignment and structure |
|---|
Score = 182 bits (465), Expect = 4e-51
Identities = 62/245 (25%), Positives = 100/245 (40%), Gaps = 50/245 (20%)
Query: 1 IIHHNCTPEYQANEVLKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGK 60
I + + E QA V VK +K GF+ + P T VL + ++ VT++G
Sbjct: 79 FIFGSQSIESQAAMVHAVKNFKAGFVVSDSNVKPDQTFADVLAISQRTTHNTVAVTDDGT 138
Query: 61 LGEKLLGIVTSRDVDFLENSANMDLKIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAI 120
LLG+VT RD + ++ +T + LV++ DT I
Sbjct: 139 PHGVLLGLVTQRDYPI----------DLTQTETKVSDMMTPFSKLVTAHQDTKLSEANKI 188
Query: 121 AMA--------------LCGGI------------------------GAAIGTREADKYRL 142
L + GA I TR+ + R+
Sbjct: 189 IWEKKLNALPIIDDDQHLRYIVFRKDYDRSQVCHNELVDSQKRYLVGAGINTRDFRE-RV 247
Query: 143 KLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPD-MQVIGGNVVTTDQAKNLIDAGVD 201
L +AG DV+ +DSS G S +Q I +I+++Y D ++V GN+V + + L DAG D
Sbjct: 248 PALVEAGADVLCIDSSDGFSEWQKITIGWIREKYGDKVKVGAGNIVDGEGFRYLADAGAD 307
Query: 202 GLRVG 206
+++G
Sbjct: 308 FIKIG 312
|
| >1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 Length = 494 | Back alignment and structure |
|---|
Score = 311 bits (800), Expect = e-100
Identities = 149/512 (29%), Positives = 240/512 (46%), Gaps = 129/512 (25%)
Query: 88 EKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQ 147
+ + + LT++I + PLVS+ MDTVTE+ +A A+A GG IG
Sbjct: 35 DVKIDTRLTRQIRINIPLVSAAMDTVTEAALAKALAREGG----IG-------------- 76
Query: 148 AGVDVVI---LDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGLR 204
+I L + Q + +KK + + +T + +A +
Sbjct: 77 -----IIHKNLTPDE-----QARQVSIVKKTENGIIY---DPITVTPDMTVKEA----ID 119
Query: 205 VGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQ 264
+ + + G PV + +L+G++T+RDV F +N + KI+ +MT ++I A
Sbjct: 120 LMAE--YKIGGLPVVDEEG---RLVGLLTNRDVRFEKN---LSKKIKDLMTPREKLIVAP 171
Query: 265 AGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAA 324
ISLE+A IL + + KLP+++ +L+ LI D+ ++P++++DE +L+VGAA
Sbjct: 172 PDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIMSVIEHPNAARDEKGRLLVGAA 231
Query: 325 IGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQ 384
+GT R++ L +AGVDV+++D++ G+S V+
Sbjct: 232 VGTSPETMERVEKLVKAGVDVIVIDTAHGHSR---------------------RVI---- 266
Query: 385 PRATLLNFIYQIEMIKFIKKEYPDMQVIGRN----------------------------- 415
E ++ IK +YPD+ V+ N
Sbjct: 267 ------------ETLEMIKADYPDLPVVAGNVATPEGTEALIKAGADAVKVGVGPGSICT 314
Query: 416 -------G----TAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAG 464
G TAV +E A + VP+IADGG++ G ++KALA GA + M+GS+ AG
Sbjct: 315 TRVVAGVGVPQLTAVMECSEVARKYDVPIIADGGIRYSGDIVKALAAGAESVMVGSIFAG 374
Query: 465 TSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIV 524
T EAPGE G + K YRGMGSL AM G+A DRY +K V +G+ G +
Sbjct: 375 TEEAPGETILYQGRKYKAYRGMGSLGAMRS---GSA--DRYGQEGENKF-VPEGIEGMVP 428
Query: 525 DKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLR 556
KG+V + L GL+ G IGA+++ L+
Sbjct: 429 YKGTVKDVVHQLVGGLRSGMGYIGARTIKELQ 460
|
| >1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 Length = 494 | Back alignment and structure |
|---|
Score = 178 bits (454), Expect = 1e-49
Identities = 75/244 (30%), Positives = 117/244 (47%), Gaps = 52/244 (21%)
Query: 1 IIHHNCTPEYQANEVLKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGK 60
IIH N TP+ QA +V VKK ++G I DP+ + P T+ + + + ++ G PV +
Sbjct: 77 IIHKNLTPDEQARQVSIVKKTENGIIYDPITVTPDMTVKEAIDLMAEYKIGGLPVVDEEG 136
Query: 61 LGEKLLGIVTSRDVDFLENSANMDLKIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAI 120
+L+G++T+RDV F EK+LS + +T L+ +P D E I
Sbjct: 137 ---RLVGLLTNRDVRF-----------EKNLSKKIKDLMTPREKLIVAPPDISLEKAKEI 182
Query: 121 AMA--------------LCGGI------------------------GAAIGTREADKYRL 142
L G I GAA+GT R+
Sbjct: 183 LHQHRIEKLPLVSKDNKLVGLITIKDIMSVIEHPNAARDEKGRLLVGAAVGTSPETMERV 242
Query: 143 KLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDG 202
+ L +AGVDV+++D++ G+S IE ++ IK +YPD+ V+ GNV T + + LI AG D
Sbjct: 243 EKLVKAGVDVIVIDTAHGHSRRVIETLEMIKADYPDLPVVAGNVATPEGTEALIKAGADA 302
Query: 203 LRVG 206
++VG
Sbjct: 303 VKVG 306
|
| >3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* Length = 511 | Back alignment and structure |
|---|
Score = 310 bits (797), Expect = 2e-99
Identities = 152/512 (29%), Positives = 233/512 (45%), Gaps = 128/512 (25%)
Query: 88 EKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQ 147
E + + L++ + L PL+S+ MDTVTE+DMAIAMA GG +G
Sbjct: 53 EVSVKTVLSESLQLNIPLISAGMDTVTEADMAIAMARQGG----LG-------------- 94
Query: 148 AGVDVVI---LDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGLR 204
+I + Q Q E + +K+ + + + DA
Sbjct: 95 -----IIHKNMSIEQ-----QAEQVDKVKRSESGVIS---DPFFLTPEHQVYDA----EH 137
Query: 205 VGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQ 264
+ + G PV N KL+GI+T+RD+ F+++ +KI VMT +I+A
Sbjct: 138 LMGK--YRISGVPVVNNLDER-KLVGIITNRDMRFIQD---YSIKISDVMTKEQ-LITAP 190
Query: 265 AGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAA 324
G +L EA IL+K K KLP++++ G L LI D++K ++P+S+KD+ +L+VGAA
Sbjct: 191 VGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDIEKVIEFPNSAKDKQGRLLVGAA 250
Query: 325 IGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQ 384
+G R+ L +A VD ++LD++ G+S V+
Sbjct: 251 VGVTADAMTRIDALVKASVDAIVLDTAHGHSQ---------------------GVI---- 285
Query: 385 PRATLLNFIYQIEMIKFIKKEYPDMQVIGRN----------------------------- 415
+ +K ++ +YP + +I N
Sbjct: 286 ------------DKVKEVRAKYPSLNIIAGNVATAEATKALIEAGANVVKVGIGPGSICT 333
Query: 416 -------G----TAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAG 464
G TAVY A A + G+PVIADGG++ G ++KALA GA M+GS+ AG
Sbjct: 334 TRVVAGVGVPQLTAVYDCATEARKHGIPVIADGGIKYSGDMVKALAAGAHVVMLGSMFAG 393
Query: 465 TSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIV 524
+E+PGE G + K YRGMGS+ AM + G+ DRYF KL V +G+ G +
Sbjct: 394 VAESPGETEIYQGRQFKVYRGMGSVGAMEK---GSK--DRYFQEGNKKL-VPEGIEGRVP 447
Query: 525 DKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLR 556
KG + + L GL+ G GA+ L LR
Sbjct: 448 YKGPLADTVHQLVGGLRAGMGYCGAQDLEFLR 479
|
| >3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* Length = 511 | Back alignment and structure |
|---|
Score = 175 bits (446), Expect = 2e-48
Identities = 67/244 (27%), Positives = 108/244 (44%), Gaps = 51/244 (20%)
Query: 1 IIHHNCTPEYQANEVLKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGK 60
IIH N + E QA +V KVK+ + G I DP + P + + ++ G PV N
Sbjct: 95 IIHKNMSIEQQAEQVDKVKRSESGVISDPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLD 154
Query: 61 LGEKLLGIVTSRDVDFLENSANMDLKIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAI 120
KL+GI+T+RD+ F +D S ++ +T L+++P+ T I
Sbjct: 155 ER-KLVGIITNRDMRF-----------IQDYSIKISDVMT-KEQLITAPVGTTLSEAEKI 201
Query: 121 AMA--------------LCGGI------------------------GAAIGTREADKYRL 142
L G I GAA+G R+
Sbjct: 202 LQKYKIEKLPLVDNNGVLQGLITIKDIEKVIEFPNSAKDKQGRLLVGAAVGVTADAMTRI 261
Query: 143 KLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDG 202
L +A VD ++LD++ G+S I+ +K ++ +YP + +I GNV T + K LI+AG +
Sbjct: 262 DALVKASVDAIVLDTAHGHSQGVIDKVKEVRAKYPSLNIIAGNVATAEATKALIEAGANV 321
Query: 203 LRVG 206
++VG
Sbjct: 322 VKVG 325
|
| >2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 Length = 486 | Back alignment and structure |
|---|
Score = 300 bits (771), Expect = 7e-96
Identities = 142/513 (27%), Positives = 241/513 (46%), Gaps = 138/513 (26%)
Query: 88 EKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQ 147
+ D+S+ +T + L P++S+ MDTVTE +MA+AMA GG+G
Sbjct: 33 DVDVSTRITPNVKLNIPILSAAMDTVTEWEMAVAMAREGGLG------------------ 74
Query: 148 AGVDVVI---LDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGLR 204
VI + + Q+E +K +K+ + +V+T + + A L
Sbjct: 75 -----VIHRNMGIEE-----QVEQVKRVKRAERLIVE---DVITIAPDETVDFA----LF 117
Query: 205 VGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQ 264
+ HG G PV E+ K+ +GI+T +D+ ++++MT E+I+
Sbjct: 118 LMEK--HGIDGLPVVEDEKV----VGIITKKDIAA-----REGKLVKELMTK--EVITVP 164
Query: 265 AGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAA 324
I +EEA I+ +++ +LP+++++G+L+ LI +DL + Y ++ +DEN +L+V AA
Sbjct: 165 ESIEVEEALKIMIENRIDRLPVVDERGKLVGLITMSDLVARKKYKNAVRDENGELLVAAA 224
Query: 325 IGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQ 384
+ + R L +AGVDV+++D++ +++
Sbjct: 225 VSPFDIK--RAIELDKAGVDVIVVDTAHAHNL---------------------KA----- 256
Query: 385 PRATLLNFIYQIEMIKFIKKEYPDMQVIGRN----------------------------- 415
I+ +K ++++ D I N
Sbjct: 257 -----------IKSMKEMRQKV-DADFIVGNIANPKAVDDLTFADAVKVGIGPGSICTTR 304
Query: 416 -----G----TAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTS 466
G TAV VA+ A G+ VIADGG++ G ++KA+A GA M+G+LLAGT
Sbjct: 305 IVAGVGVPQITAVAMVADRAQEYGLYVIADGGIRYSGDIVKAIAAGADAVMLGNLLAGTK 364
Query: 467 EAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYF---HNEMDKLKVAQGVSGAI 523
EAPG+ +G + K+YRGMGSL AM + GGA +RY+ + + K V +GV G +
Sbjct: 365 EAPGKEVIINGRKYKQYRGMGSLGAMMK--GGA---ERYYQGGYMKTRKF-VPEGVEGVV 418
Query: 524 VDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLR 556
+G+V L L GLK G +GA+++ L+
Sbjct: 419 PYRGTVSEVLYQLVGGLKAGMGYVGARNIRELK 451
|
| >2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 Length = 486 | Back alignment and structure |
|---|
Score = 148 bits (377), Expect = 4e-39
Identities = 53/244 (21%), Positives = 98/244 (40%), Gaps = 62/244 (25%)
Query: 1 IIHHNCTPEYQANEVLKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGK 60
+IH N E Q +V +VK+ + + D + IAP T+ L + ++HG G PV E+
Sbjct: 75 VIHRNMGIEEQVEQVKRVKRAERLIVEDVITIAPDETVDFALFLMEKHGIDGLPVVEDE- 133
Query: 61 LGEKLLGIVTSRDVDFLENSANMDLKIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAI 120
K++GI+T +D+ + +TK +++ P E + I
Sbjct: 134 ---KVVGIITKKDIAA-----REGKLV----KELMTK------EVITVPESIEVEEALKI 175
Query: 121 AMA--------------LCGGI------------------------GAAIGTREADKYRL 142
+ L G I AA+ + R
Sbjct: 176 MIENRIDRLPVVDERGKLVGLITMSDLVARKKYKNAVRDENGELLVAAAVSPFDIK--RA 233
Query: 143 KLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDG 202
L +AGVDV+++D++ +++ I+ +K ++++ D I GN+ +L D
Sbjct: 234 IELDKAGVDVIVVDTAHAHNLKAIKSMKEMRQKV-DADFIVGNIANPKAVDDL--TFADA 290
Query: 203 LRVG 206
++VG
Sbjct: 291 VKVG 294
|
| >4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} Length = 496 | Back alignment and structure |
|---|
Score = 265 bits (679), Expect = 4e-82
Identities = 119/387 (30%), Positives = 180/387 (46%), Gaps = 89/387 (22%)
Query: 211 HGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLE 270
HGF GFPV +L+GI+T RDV F+ + + + VMT + + + G +
Sbjct: 118 HGFAGFPVVTENN---ELVGIITGRDVRFVTD---LTKSVAAVMTPKERLATVKEGATGA 171
Query: 271 EANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREA 330
E + K++ K+ ++ND+ +L +I D K+ P++ KDE +L VGAA+G
Sbjct: 172 EVQEKMHKARVEKILVVNDEFQLKGMITAKDFHKAESKPNACKDEQGRLRVGAAVGAAPG 231
Query: 331 DKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLL 390
++ R+K L +AGVDV+++DSS G+S VL
Sbjct: 232 NEERVKALVEAGVDVLLIDSSHGHSE---------------------GVL---------- 260
Query: 391 NFIYQIEMIKFIKKEYPDMQVIGRN----------------------------------- 415
+ I+ + YP +++IG N
Sbjct: 261 ------QRIRETRAAYPHLEIIGGNVATAEGARALIEAGVSAVKVGIGPGSICTTRIVTG 314
Query: 416 -G----TAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAPG 470
G TA+ A A+ G+PVIADGG++ G + KA+A GAS M+GS+ AGT EAPG
Sbjct: 315 VGVPQITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMVGSMFAGTEEAPG 374
Query: 471 EYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLK-VAQGVSGAIVDKGSV 529
E G K YRGMGSL AMS+ G++ DRYF + K V +G+ G I KG +
Sbjct: 375 EVILYQGRSYKAYRGMGSLGAMSK---GSS--DRYFQTDNAADKLVPEGIEGRIAYKGHL 429
Query: 530 LRFLPYLQCGLKHGCQDIGAKSLSNLR 556
+ GL+ G+ ++ +LR
Sbjct: 430 KEIIHQQMGGLRSCMGLTGSATVEDLR 456
|
| >4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} Length = 496 | Back alignment and structure |
|---|
Score = 178 bits (453), Expect = 2e-49
Identities = 71/244 (29%), Positives = 110/244 (45%), Gaps = 52/244 (21%)
Query: 1 IIHHNCTPEYQANEVLKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGK 60
IH N + E QA +V +VK ++ G + PV + P T+ V+++ HGF GFPV
Sbjct: 71 FIHKNMSIEQQAAQVHQVKIFEAGVVTHPVTVRPEQTIADVMELTHYHGFAGFPVVTENN 130
Query: 61 LGEKLLGIVTSRDVDFLENSANMDLKIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAI 120
+L+GI+T RDV F DL+ + +T L +
Sbjct: 131 ---ELVGIITGRDVRF-----------VTDLTKSVAAVMTPKERLATVKEGATGAEVQEK 176
Query: 121 --------------AMALCGGI------------------------GAAIGTREADKYRL 142
L G I GAA+G ++ R+
Sbjct: 177 MHKARVEKILVVNDEFQLKGMITAKDFHKAESKPNACKDEQGRLRVGAAVGAAPGNEERV 236
Query: 143 KLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDG 202
K L +AGVDV+++DSS G+S ++ I+ + YP +++IGGNV T + A+ LI+AGV
Sbjct: 237 KALVEAGVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEAGVSA 296
Query: 203 LRVG 206
++VG
Sbjct: 297 VKVG 300
|
| >4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} Length = 496 | Back alignment and structure |
|---|
Score = 75.6 bits (187), Expect = 1e-14
Identities = 24/42 (57%), Positives = 30/42 (71%)
Query: 88 EKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIG 129
DL + LTK I L P+VS+ MDTVTE+ +AIA+A GGIG
Sbjct: 29 TADLRTRLTKNIALNIPMVSASMDTVTEARLAIALAQEGGIG 70
|
| >1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 Length = 491 | Back alignment and structure |
|---|
Score = 263 bits (676), Expect = 9e-82
Identities = 112/389 (28%), Positives = 179/389 (46%), Gaps = 91/389 (23%)
Query: 211 HGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLE 270
+ G P+ E KL+GI+T+RD+ F+ + + I + MT+ + +++A G LE
Sbjct: 119 YRISGVPIVETLANR-KLVGIITNRDMRFISD---YNAPISEHMTSEH-LVTAAVGTDLE 173
Query: 271 EANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREA 330
A IL + + KLP++++ G L LI D++K ++P ++KDE +L+V AA+G
Sbjct: 174 TAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIEFPHAAKDEFGRLLVAAAVGVTSD 233
Query: 331 DKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLL 390
R + L +AG D +++D++ G+S VL
Sbjct: 234 TFERAEALFEAGADAIVIDTAHGHSA---------------------GVL---------- 262
Query: 391 NFIYQIEMIKFIKKEYPDMQVIGRN----------------------------------- 415
I I+ +P+ +I N
Sbjct: 263 ------RKIAEIRAHFPNRTLIAGNIATAEGARALYDAGVDVVKVGIGPGSICTTRVVAG 316
Query: 416 -G----TAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAPG 470
G TA+Y A A G +IADGG++ G ++KALA G + M+GS+ AGT EAPG
Sbjct: 317 VGVPQVTAIYDAAAVAREYGKTIIADGGIKYSGDIVKALAAGGNAVMLGSMFAGTDEAPG 376
Query: 471 EYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYF---HNEMDKLKVAQGVSGAIVDKG 527
E G + K YRGMGS+ AM + G++ DRYF NE +KL V +G+ G + KG
Sbjct: 377 ETEIYQGRKYKTYRGMGSIAAMKK---GSS--DRYFQGSVNEANKL-VPEGIEGRVAYKG 430
Query: 528 SVLRFLPYLQCGLKHGCQDIGAKSLSNLR 556
+ + + G++ G +GA + L
Sbjct: 431 AASDIVFQMLGGIRSGMGYVGAGDIQELH 459
|
| >1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 Length = 491 | Back alignment and structure |
|---|
Score = 175 bits (447), Expect = 1e-48
Identities = 64/244 (26%), Positives = 112/244 (45%), Gaps = 51/244 (20%)
Query: 1 IIHHNCTPEYQANEVLKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGK 60
+IH N + QA EV KVK+ ++G I DP + P + + ++ +++ G P+ E
Sbjct: 72 VIHKNMSITEQAEEVRKVKRSENGVIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLA 131
Query: 61 LGEKLLGIVTSRDVDFLENSANMDLKIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAI 120
KL+GI+T+RD+ F D ++P+++ +T + LV++ + T E+ I
Sbjct: 132 NR-KLVGIITNRDMRF-----------ISDYNAPISEHMT-SEHLVTAAVGTDLETAERI 178
Query: 121 AMA--------------LCGGI------------------------GAAIGTREADKYRL 142
L G I AA+G R
Sbjct: 179 LHEHRIEKLPLVDNSGRLSGLITIKDIEKVIEFPHAAKDEFGRLLVAAAVGVTSDTFERA 238
Query: 143 KLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDG 202
+ L +AG D +++D++ G+S + I I+ +P+ +I GN+ T + A+ L DAGVD
Sbjct: 239 EALFEAGADAIVIDTAHGHSAGVLRKIAEIRAHFPNRTLIAGNIATAEGARALYDAGVDV 298
Query: 203 LRVG 206
++VG
Sbjct: 299 VKVG 302
|
| >1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 Length = 491 | Back alignment and structure |
|---|
Score = 75.6 bits (187), Expect = 1e-14
Identities = 21/42 (50%), Positives = 29/42 (69%)
Query: 88 EKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIG 129
E DL + L +TL P++++ MDTVT S MAIA+A GG+G
Sbjct: 30 EVDLKTKLADNLTLNIPIITAAMDTVTGSKMAIAIARAGGLG 71
|
| >1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1 Length = 404 | Back alignment and structure |
|---|
Score = 211 bits (540), Expect = 7e-63
Identities = 104/388 (26%), Positives = 164/388 (42%), Gaps = 110/388 (28%)
Query: 218 VTENG------KLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEE 271
VTE+ K G +GI+ +++ +IEKV T ++
Sbjct: 53 VTESQMAIAIAKEGG--IGIIH-KNMSIEAQRK----EIEKVKT-----------YKFQK 94
Query: 272 ANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREAD 331
+ + K I K L A + + D+P++ KD NN+L VGAA+
Sbjct: 95 TINTNGDTNEQKPEIFTAKQHLEKSDAYKNAEHKEDFPNACKDLNNKLRVGAAVSIDIDT 154
Query: 332 KNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLN 391
R++ L +A VD++++DS+ G+S +
Sbjct: 155 IERVEELVKAHVDILVIDSAHGHST---------------------RI------------ 181
Query: 392 FIYQIEMIKFIKKEYPDMQVIGRN------------------------------------ 415
IE+IK IK +YP++ +I N
Sbjct: 182 ----IELIKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLKVGIGPGSICTTRIVAGV 237
Query: 416 G----TAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAPGE 471
G TA+ V E + + +IADGG++ G V+KA+A GA + M+G+L AGT E+P E
Sbjct: 238 GVPQITAICDVYEACNNTNICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAGTKESPSE 297
Query: 472 YFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYF---HNEMDKLKVAQGVSGAIVDKGS 528
+G + K Y GMGS+ AM R G+ RYF +NE KL V +G+ G + G
Sbjct: 298 EIIYNGKKFKSYVGMGSISAMKR---GSK--SRYFQLENNEPKKL-VPEGIEGMVPYSGK 351
Query: 529 VLRFLPYLQCGLKHGCQDIGAKSLSNLR 556
+ L L+ GL G +GA ++S+L+
Sbjct: 352 LKDILTQLKGGLMSGMGYLGAATISDLK 379
|
| >1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1 Length = 404 | Back alignment and structure |
|---|
Score = 99.6 bits (249), Expect = 1e-22
Identities = 43/199 (21%), Positives = 72/199 (36%), Gaps = 47/199 (23%)
Query: 17 KVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLL---------G 67
K+ G I + I ++ ++K + +K
Sbjct: 62 IAKEGGIGIIHKNMSIEAQRK--EIEKVKTYKFQKTINTNGDTNE-QKPEIFTAKQHLEK 118
Query: 68 IVTSRDVDFLENSANMDLKIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGG 127
++ E P K V
Sbjct: 119 SDAYKN-------------AEHKEDFPNACKDLNNKLRV--------------------- 144
Query: 128 IGAAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVV 187
GAA+ R++ L +A VD++++DS+ G+S IE+IK IK +YP++ +I GN+V
Sbjct: 145 -GAAVSIDIDTIERVEELVKAHVDILVIDSAHGHSTRIIELIKKIKTKYPNLDLIAGNIV 203
Query: 188 TTDQAKNLIDAGVDGLRVG 206
T + A +LI G D L+VG
Sbjct: 204 TKEAALDLISVGADCLKVG 222
|
| >1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1 Length = 404 | Back alignment and structure |
|---|
Score = 68.4 bits (168), Expect = 2e-12
Identities = 41/149 (27%), Positives = 62/149 (41%), Gaps = 27/149 (18%)
Query: 88 EKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIG----------AAIGTREA 137
E L + LTK I+L P +SS MDTVTES MAIA+A GGIG +
Sbjct: 28 EVSLKTQLTKNISLNIPFLSSAMDTVTESQMAIAIAKEGGIGIIHKNMSIEAQRKEIEKV 87
Query: 138 DKYRLKLLSQAGVDVVILDSSQGNSIYQIE---MIKYIKK--EYP----DMQ-------V 181
Y+ + D + +E K + ++P D+
Sbjct: 88 KTYKFQKTINTNGDTNEQKPEIFTAKQHLEKSDAYKNAEHKEDFPNACKDLNNKLRVGAA 147
Query: 182 IGGNVVTTDQAKNLIDAGVDGLRVGS-HG 209
+ ++ T ++ + L+ A VD L + S HG
Sbjct: 148 VSIDIDTIERVEELVKAHVDILVIDSAHG 176
|
| >4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4fez_A Length = 366 | Back alignment and structure |
|---|
Score = 195 bits (498), Expect = 4e-57
Identities = 96/376 (25%), Positives = 153/376 (40%), Gaps = 105/376 (27%)
Query: 242 NSANMDLKIEKVMTNVNEIISAQAGISLEEANV----ILEKSKKGKLPIL---------- 287
N+ +M ++ +T + ++ A ++ L K+ +P++
Sbjct: 2 NAMHMLRIAKEALTFDD-VLLVPAHSTVLPNTADLRTRLTKNIALNIPMVSASMDTVTEA 60
Query: 288 ------NDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQA 341
+G + + +++ K L VGAA+G ++ R+K L +A
Sbjct: 61 RLAIALAQEGGIGFIHKNMSIEQQAAQVHQVKISG-GLRVGAAVGAAPGNEERVKALVEA 119
Query: 342 GVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKF 401
GVDV+++DSS G+S VL + I+
Sbjct: 120 GVDVLLIDSSHGHSE---------------------GVL----------------QRIRE 142
Query: 402 IKKEYPDMQVIGRN------------------------------------G----TAVYR 421
+ YP +++IG N G TA+
Sbjct: 143 TRAAYPHLEIIGGNVATAEGARALIEAGVSAVKVGIGPGSICTTRIVTGVGVPQITAIAD 202
Query: 422 VAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLK 481
A A+ G+PVIADGG++ G + KA+A GAS M+GS+ AGT EAPGE G K
Sbjct: 203 AAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMVGSMFAGTEEAPGEVILYQGRSYK 262
Query: 482 KYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLK-VAQGVSGAIVDKGSVLRFLPYLQCGL 540
YRGMGSL AMS+ G++ DRYF + K V +G+ G I KG + + GL
Sbjct: 263 AYRGMGSLGAMSK---GSS--DRYFQTDNAADKLVPEGIEGRIAYKGHLKEIIHQQMGGL 317
Query: 541 KHGCQDIGAKSLSNLR 556
+ G+ ++ +LR
Sbjct: 318 RSCMGLTGSATVEDLR 333
|
| >4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4fez_A Length = 366 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 9e-32
Identities = 62/164 (37%), Positives = 91/164 (55%), Gaps = 28/164 (17%)
Query: 70 TSRDVDFLENSANMDLKIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGI- 128
T DV L + + L DL + LTK I L P+VS+ MDTVTE+ +AIA+A GGI
Sbjct: 15 TFDDV-LLVPAHSTVLPNTADLRTRLTKNIALNIPMVSASMDTVTEARLAIALAQEGGIG 73
Query: 129 --------------------------GAAIGTREADKYRLKLLSQAGVDVVILDSSQGNS 162
GAA+G ++ R+K L +AGVDV+++DSS G+S
Sbjct: 74 FIHKNMSIEQQAAQVHQVKISGGLRVGAAVGAAPGNEERVKALVEAGVDVLLIDSSHGHS 133
Query: 163 IYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGLRVG 206
++ I+ + YP +++IGGNV T + A+ LI+AGV ++VG
Sbjct: 134 EGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEAGVSAVKVG 177
|
| >3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} Length = 400 | Back alignment and structure |
|---|
Score = 195 bits (499), Expect = 5e-57
Identities = 99/355 (27%), Positives = 146/355 (41%), Gaps = 103/355 (29%)
Query: 245 NMDL--KIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDL 302
NMD+ ++ +V+ V IS P N E
Sbjct: 74 NMDMESQVNEVLK-VKNWISNLEKNE--------------STPDQNLDKESTDGKDTKSN 118
Query: 303 KKSRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMI 362
Y + + D +L VGAAIG E + R KLL +AGVDV++LDS+ G+S+
Sbjct: 119 NNIDAYSNENLDNKGRLRVGAAIGVNEIE--RAKLLVEAGVDVIVLDSAHGHSL------ 170
Query: 363 KFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRN------- 415
N+ I +K IK + ++ VI N
Sbjct: 171 ---------------NI----------------IRTLKEIKSKM-NIDVIVGNVVTEEAT 198
Query: 416 -----------------------------G----TAVYRVAEYASRRGVPVIADGGVQSV 442
G TA+ + + AS+ G+P+IADGG++
Sbjct: 199 KELIENGADGIKVGIGPGSICTTRIVAGVGVPQITAIEKCSSVASKFGIPIIADGGIRYS 258
Query: 443 GHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAM 502
G + KALA+GAS+ M+GS+LAGT E+PGE K YRGMGS+ AM G+
Sbjct: 259 GDIGKALAVGASSVMIGSILAGTEESPGEKELIGDTVYKYYRGMGSVGAMKS---GSG-- 313
Query: 503 DRYFHNEMDKLK-VAQGVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLR 556
DRYF + + K V +G+ G + KG + + L GL+ +G+ S+ L
Sbjct: 314 DRYFQEKRPENKMVPEGIEGRVKYKGEMEGVVYQLVGGLRSCMGYLGSASIEELW 368
|
| >3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} Length = 400 | Back alignment and structure |
|---|
Score = 97.6 bits (244), Expect = 5e-22
Identities = 56/202 (27%), Positives = 86/202 (42%), Gaps = 24/202 (11%)
Query: 13 NEV-LKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTS 71
EV L+ K K+ ++ P+ + T+ + L G + E + V
Sbjct: 27 REVSLETKLTKNVSLKIPLISSAMDTVTEHLMAVGMARLGGIGIIHKNMDMESQVNEVLK 86
Query: 72 RDVDFLENSANMDLKIEK----DLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGG 127
+N + K E +L T + G
Sbjct: 87 V-----KNWISNLEKNESTPDQNLDKESTDGKDT--------KSNNNIDAYSNENLDNKG 133
Query: 128 ---IGAAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGG 184
+GAAIG E + R KLL +AGVDV++LDS+ G+S+ I +K IK + ++ VI G
Sbjct: 134 RLRVGAAIGVNEIE--RAKLLVEAGVDVIVLDSAHGHSLNIIRTLKEIKSKM-NIDVIVG 190
Query: 185 NVVTTDQAKNLIDAGVDGLRVG 206
NVVT + K LI+ G DG++VG
Sbjct: 191 NVVTEEATKELIENGADGIKVG 212
|
| >3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp} Length = 361 | Back alignment and structure |
|---|
Score = 194 bits (495), Expect = 8e-57
Identities = 78/374 (20%), Positives = 139/374 (37%), Gaps = 86/374 (22%)
Query: 232 VTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKG 291
SR V ++ K+ N+ +ISA E ++ KG
Sbjct: 22 HESRRVVET----TSTDRLGKLTLNLP-VISANMDTITESNMANF----------MHSKG 66
Query: 292 ELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVVILDSS 351
+ AL ++++ K V ++G E + R + L AG D +D +
Sbjct: 67 AMGALHRFMTIEENIQEFKKCKGP-----VFVSVGCTENELQRAEALRDAGADFFCVDVA 121
Query: 352 QGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKE------ 405
++ Y + +K +++ ++ GNV AT ++
Sbjct: 122 HAHAKYVGKTLKSLRQLLGSRCIMAGNV-------ATY-------AGADYLASCGADIIK 167
Query: 406 ------------------YPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMK 447
P + T + + ++ADGG+++ G ++K
Sbjct: 168 AGIGGGSVCSTRIKTGFGVP--ML-----TCIQDCSRAD----RSIVADGGIKTSGDIVK 216
Query: 448 ALALGASTAMMGSLLAGTSEAPGEYF-FSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYF 506
ALA GA M+G +LAG++ PGE F DG ++K+YRGM S E A + +
Sbjct: 217 ALAFGADFVMIGGMLAGSAPTPGEVFQKDDGSKVKRYRGMASRE----------AQEAFL 266
Query: 507 HNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRAMMYSGELKF 566
+ A+GV+ + K + + + GL+ G GA S+S L+ +L +
Sbjct: 267 GQMHEWK-TAEGVATEVPFKENPDGIIADIIGGLRSGLTYAGADSISELQR-----KLNY 320
Query: 567 EKRTLCAQNEGSVH 580
T + E H
Sbjct: 321 VIVTQAGRIESLPH 334
|
| >3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp} Length = 361 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 8e-33
Identities = 36/143 (25%), Positives = 63/143 (44%), Gaps = 23/143 (16%)
Query: 87 IEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIG----------------- 129
+ + S+ K+TL P++S+ MDT+TES+MA M G +G
Sbjct: 27 VVETTSTDRLGKLTLNLPVISANMDTITESNMANFMHSKGAMGALHRFMTIEENIQEFKK 86
Query: 130 ------AAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIG 183
++G E + R + L AG D +D + ++ Y + +K +++ ++
Sbjct: 87 CKGPVFVSVGCTENELQRAEALRDAGADFFCVDVAHAHAKYVGKTLKSLRQLLGSRCIMA 146
Query: 184 GNVVTTDQAKNLIDAGVDGLRVG 206
GNV T A L G D ++ G
Sbjct: 147 GNVATYAGADYLASCGADIIKAG 169
|
| >2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A* Length = 351 | Back alignment and structure |
|---|
Score = 193 bits (493), Expect = 1e-56
Identities = 79/372 (21%), Positives = 139/372 (37%), Gaps = 85/372 (22%)
Query: 227 KLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPI 286
G+V +DF + + + +E+ S + +PI
Sbjct: 10 HSSGLVPRGSLDF---KDVLLRPKRSTLKSRSEV-DLTRSFSFRNSKQTYSG-----VPI 60
Query: 287 LND---------------KGELIALIART-DLKKSRDYPDSSKDENNQLIVGAAIGTREA 330
+ K L + + L + +++ ++ + + A+ GT +
Sbjct: 61 IAANMDTVGTFEMAKVLCKFSLFTAVHKHYSLVQWQEFA--GQNPDCLEHLAASSGTGSS 118
Query: 331 DKNRLKLLSQA--GVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRAT 388
D +L+ + +A V + LD + G S + +E +K ++K +P ++ GNV T
Sbjct: 119 DFEQLEQILEAIPQVKYICLDVANGYSEHFVEFVKDVRKRFPQHTIMAGNV-------VT 171
Query: 389 LLNFIYQIEMIKFIKKE------------------------YPDMQVIGRNGTAVYRVAE 424
EM++ + YP Q+ +AV A+
Sbjct: 172 G-------EMVEELILSGADIIKVGIGPGSVCTTRKKTGVGYP--QL-----SAVMECAD 217
Query: 425 YASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYR 484
A +I+DGG G V KA GA M+G +LAG SE+ GE DG + K +
Sbjct: 218 AAHGLKGHIISDGGCSCPGDVAKAFGAGADFVMLGGMLAGHSESGGELIERDGKKYKLFY 277
Query: 485 GMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCGLKHGC 544
GM S AM + GG + Y ++G + + KG V + + G++ C
Sbjct: 278 GMSSEMAMKKYAGG---VAEYR--------ASEGKTVEVPFKGDVEHTIRDILGGIRSTC 326
Query: 545 QDIGAKSLSNLR 556
+GA L L
Sbjct: 327 TYVGAAKLKELS 338
|
| >2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A* Length = 351 | Back alignment and structure |
|---|
Score = 120 bits (302), Expect = 5e-30
Identities = 40/183 (21%), Positives = 72/183 (39%), Gaps = 43/183 (23%)
Query: 64 KLLGIVTSRDVDFLENSANMDLKIEKDLSS------------PLTKKITLAAPLVSSPMD 111
G+V +DF + L S +K+ P++++ MD
Sbjct: 10 HSSGLVPRGSLDF---KDVLLRPKRSTLKSRSEVDLTRSFSFRNSKQTYSGVPIIAANMD 66
Query: 112 TVTESDMAIAMALCGGI--------------------------GAAIGTREADKYRLKLL 145
TV +MA + A+ GT +D +L+ +
Sbjct: 67 TVGTFEMAKVLCKFSLFTAVHKHYSLVQWQEFAGQNPDCLEHLAASSGTGSSDFEQLEQI 126
Query: 146 SQA--GVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGL 203
+A V + LD + G S + +E +K ++K +P ++ GNVVT + + LI +G D +
Sbjct: 127 LEAIPQVKYICLDVANGYSEHFVEFVKDVRKRFPQHTIMAGNVVTGEMVEELILSGADII 186
Query: 204 RVG 206
+VG
Sbjct: 187 KVG 189
|
| >3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} Length = 361 | Back alignment and structure |
|---|
Score = 183 bits (467), Expect = 7e-53
Identities = 98/372 (26%), Positives = 160/372 (43%), Gaps = 104/372 (27%)
Query: 233 TSRDVDFLENSANM---DLKIEKVMTN----VNEIISAQAGISLEEANVILEKSKKGKLP 285
T D+ + N + + ++ +E +T +IS+ + E + + ++ G +
Sbjct: 14 TFEDILLVPNYSEVLPREVSLETKLTKNVSLKIPLISSAMDT-VTEHLMAVGMARLGGIG 72
Query: 286 ILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDV 345
I++ D++ + K+ L VGAAIG E + R KLL +AGVDV
Sbjct: 73 IIHKN---------MDMESQVNEVLKVKNSG-GLRVGAAIGVNEIE--RAKLLVEAGVDV 120
Query: 346 VILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKE 405
++LDS+ G+S+ N++ +K IK +
Sbjct: 121 IVLDSAHGHSL---------------------NII----------------RTLKEIKSK 143
Query: 406 YPDMQVIGRN------------------------------------G----TAVYRVAEY 425
++ VI N G TA+ + +
Sbjct: 144 M-NIDVIVGNVVTEEATKELIENGADGIKVGIGPGSICTTRIVAGVGVPQITAIEKCSSV 202
Query: 426 ASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRG 485
AS+ G+P+IADGG++ G + KALA+GAS+ M+GS+LAGT E+PGE K YRG
Sbjct: 203 ASKFGIPIIADGGIRYSGDIGKALAVGASSVMIGSILAGTEESPGEKELIGDTVYKYYRG 262
Query: 486 MGSLEAMSRKDGGAAAMDRYFHNEMDKLK-VAQGVSGAIVDKGSVLRFLPYLQCGLKHGC 544
MGS+ AM G+ DRYF + + K V +G+ G + KG + + L GL+
Sbjct: 263 MGSVGAMKS---GSG--DRYFQEKRPENKMVPEGIEGRVKYKGEMEGVVYQLVGGLRSCM 317
Query: 545 QDIGAKSLSNLR 556
+G+ S+ L
Sbjct: 318 GYLGSASIEELW 329
|
| >3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} Length = 361 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 2e-27
Identities = 64/167 (38%), Positives = 90/167 (53%), Gaps = 37/167 (22%)
Query: 70 TSRDVDFLENSANM---DLKIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCG 126
T D+ + N + + ++ +E L TK ++L PL+SS MDTVTE MA+ MA G
Sbjct: 14 TFEDILLVPNYSEVLPREVSLETKL----TKNVSLKIPLISSAMDTVTEHLMAVGMARLG 69
Query: 127 GI---------------------------GAAIGTREADKYRLKLLSQAGVDVVILDSSQ 159
GI GAAIG E + R KLL +AGVDV++LDS+
Sbjct: 70 GIGIIHKNMDMESQVNEVLKVKNSGGLRVGAAIGVNEIE--RAKLLVEAGVDVIVLDSAH 127
Query: 160 GNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGLRVG 206
G+S+ I +K IK + ++ VI GNVVT + K LI+ G DG++VG
Sbjct: 128 GHSLNIIRTLKEIKSKM-NIDVIVGNVVTEEATKELIENGADGIKVG 173
|
| >1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A* Length = 336 | Back alignment and structure |
|---|
Score = 175 bits (447), Expect = 3e-50
Identities = 77/378 (20%), Positives = 137/378 (36%), Gaps = 96/378 (25%)
Query: 231 IVTSR-DVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILND 289
IV SR + D + + K + ++ A ++E ++
Sbjct: 27 IVNSRSECD-------TTVTLGKHKFKLP-VVPANMQTIIDE-----------RIATYLA 67
Query: 290 KGELIALIARTDLKKSRDYPDSSKDENNQ-LIVGAAIGTREADKNRLKLLSQAGV--DVV 346
+ ++ R +K +D ++ LI ++G +E + ++ L+ + + +
Sbjct: 68 ENNYFYIMHRFQPEK---RISFIRDMQSRGLIASISVGVKEDEYEFVQQLAAEHLTPEYI 124
Query: 347 ILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKE- 405
+D + G+S I MI+ IKK P+ VI GNV T E ++ ++
Sbjct: 125 TIDIAHGHSNAVINMIQHIKKHLPESFVIAGNV-------GT-------PEAVRELENAG 170
Query: 406 -----------------------YPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSV 442
Q+ A+ A+ A P+IADGG+++
Sbjct: 171 ADATKVGIGPGKVCITKIKTGFGTGGWQL-----AALRWCAKAA---SKPIIADGGIRTN 222
Query: 443 GHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAM 502
G V K++ GA+ M+GSL AG E+PGE DG K+Y G S K
Sbjct: 223 GDVAKSIRFGATMVMIGSLFAGHEESPGETIEKDGKLYKEYFGSASEFQKGEK------- 275
Query: 503 DRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRAMMYSG 562
K +G + KGS+ L ++ L+ G L ++R
Sbjct: 276 -----------KNVEGKKMFVEHKGSLEDTLIEMEQDLQSSISYAGGTKLDSIR------ 318
Query: 563 ELKFEKRTLCAQNEGSVH 580
+ + N V+
Sbjct: 319 TVDYVVVKNSIFNGDKVY 336
|
| >1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A* Length = 336 | Back alignment and structure |
|---|
Score = 118 bits (299), Expect = 1e-29
Identities = 35/146 (23%), Positives = 62/146 (42%), Gaps = 28/146 (19%)
Query: 88 EKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGI------------------- 128
E D + L K P+V + M T+ + +A +A
Sbjct: 33 ECDTTVTLGK-HKFKLPVVPANMQTIIDERIATYLAENNYFYIMHRFQPEKRISFIRDMQ 91
Query: 129 ------GAAIGTREADKYRLKLLSQAGV--DVVILDSSQGNSIYQIEMIKYIKKEYPDMQ 180
++G +E + ++ L+ + + + +D + G+S I MI++IKK P+
Sbjct: 92 SRGLIASISVGVKEDEYEFVQQLAAEHLTPEYITIDIAHGHSNAVINMIQHIKKHLPESF 151
Query: 181 VIGGNVVTTDQAKNLIDAGVDGLRVG 206
VI GNV T + + L +AG D +VG
Sbjct: 152 VIAGNVGTPEAVRELENAGADATKVG 177
|
| >2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032} Length = 393 | Back alignment and structure |
|---|
Score = 138 bits (348), Expect = 6e-36
Identities = 46/292 (15%), Positives = 89/292 (30%), Gaps = 56/292 (19%)
Query: 243 SANMDLKIEKVM------------TNVNEIISAQAGISLEEANVILEKSKKGKLPILNDK 290
+ D N + A + A VI + +
Sbjct: 72 NHPSDALASPEFVIEMGKQGGLGVINAEGLWGRHADLDEAIAKVIAAYEEGDQAAATRTL 131
Query: 291 GELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVVILDS 350
EL A + + ++ +++ + ++ +AG D++++
Sbjct: 132 QELHAA---PLDTELLSERIAQVRDSGEIVAVRVSPQNVRE--IAPIVIKAGADLLVIQG 186
Query: 351 SQGNSIYQIEMIKFIK----KEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEY 406
+ ++ + + + D+ VI G V + +
Sbjct: 187 TLISAEHVNTGGEALNLKEFIGSLDVPVIAGGV-------ND-------YTTALHMMRTG 232
Query: 407 PDMQVIGRNG--------------TAVYRVAEYASR-------RGVPVIADGGVQSVGHV 445
++G TA+ VA R V +IADG +++ G V
Sbjct: 233 AVGIIVGGGENTNSLALGMEVSMATAIADVAAARRDYLDETGGRYVHIIADGSIENSGDV 292
Query: 446 MKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDG 497
+KA+A GA ++GS LA EA G+ +F V G + D
Sbjct: 293 VKAIACGADAVVLGSPLARAEEAAGKGYFWPAVAAHPRFPRGVVTESVDLDE 344
|
| >2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032} Length = 393 | Back alignment and structure |
|---|
Score = 77.6 bits (191), Expect = 2e-15
Identities = 36/234 (15%), Positives = 76/234 (32%), Gaps = 28/234 (11%)
Query: 3 HHNCTPEYQANEV--LKVKKYKHGFIRDPVCIAP--STTLGKVLQMKKQHGFCGF--PVT 56
H N + + V ++ + + D + + T K + F P
Sbjct: 12 HENLYFQGMRDHVEIGIGREARRTYSLDDISVVSSRRTRSSKDVDTTWHIDAYKFDLPFM 71
Query: 57 --------------ENGKLGEKLLGIVTSRD--VDFLENSANMDLKIEKDLSSPLTKKIT 100
E GK G LG++ + + + I
Sbjct: 72 NHPSDALASPEFVIEMGKQG--GLGVINAEGLWGRHADLDEAIAKVIAAYEEGDQAAATR 129
Query: 101 LAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQG 160
L ++P+DT S+ + G I A + + + ++ +AG D++++ +
Sbjct: 130 TLQELHAAPLDTELLSERIAQVRDSGEIVAVRVSPQNVREIAPIVIKAGADLLVIQGTLI 189
Query: 161 NSIYQIEMIKYIK----KEYPDMQVIGGNVVTTDQAKNLIDAGVDGLRVGSHGC 210
++ + + + D+ VI G V A +++ G G+ VG
Sbjct: 190 SAEHVNTGGEALNLKEFIGSLDVPVIAGGVNDYTTALHMMRTGAVGIIVGGGEN 243
|
| >2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 9e-30
Identities = 34/258 (13%), Positives = 93/258 (36%), Gaps = 27/258 (10%)
Query: 211 HGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLE 270
+ FPV KL+GI++ + + + ++ ++ ++ + +L+
Sbjct: 30 YKVRSFPVVNKEG---KLVGIISVKRILVNPDEE----QLAMLVKR--DVPVVKENDTLK 80
Query: 271 EANVILEKSKKGKLPILNDKGELIALIARTDLKKS----RDYPDSSKDENNQLIVGAAIG 326
+A ++ + ++ +++ KG+ + ++ D+ + + + E + +
Sbjct: 81 KAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFAKSEKYKGVEIEPYYQRYVSIVW 140
Query: 327 TREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPR 386
K LK L + + + S+GN + ++ ++ + + +
Sbjct: 141 EGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTELAASSEEE 200
Query: 387 ATLLNFIYQIEMIKFIK------KEYPDMQVIG-RNGTAVYRVAEYASRRGV---PVI-A 435
L + + ++ E VI V+ VA ++ + PVI
Sbjct: 201 WILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRG 260
Query: 436 DG---GVQSVGHVMKALA 450
+G G+ ++K L
Sbjct: 261 EGDLIGLIRDFDLLKVLV 278
|
| >2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282 | Back alignment and structure |
|---|
Score = 92.9 bits (231), Expect = 3e-21
Identities = 46/320 (14%), Positives = 106/320 (33%), Gaps = 67/320 (20%)
Query: 20 KYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDFLEN 79
+ K ++PV I T L++ K++ FPV KL+GI++ + + +
Sbjct: 2 RVKTIMTQNPVTITLPATRNYALELFKKYKVRSFPVVNKEG---KLVGIISVKRILVNPD 58
Query: 80 SANMDLKIEKDL-----SSPLTKKITL-------AAPLVSSPMD---TVTESDMAIAMAL 124
+ + +++D+ + L K L +V S +T D+
Sbjct: 59 EEQLAMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFA 118
Query: 125 CGGI-------------GAAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKY 171
+ + K LK L + + + S+GN + ++
Sbjct: 119 KSEKYKGVEIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDL 178
Query: 172 IKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGI 231
++ + + + + + ++++ L
Sbjct: 179 LRDSEIVRIMKSTELAASSEEEWILESHPTLLFEKFEL---------------------- 216
Query: 232 VTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKG 291
+ + ++MT ++I A +++ E + + K +LP++ +G
Sbjct: 217 ------------QLPNKPVAEIMT--RDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEG 262
Query: 292 ELIALIARTDLKKSRDYPDS 311
+LI LI DL K +
Sbjct: 263 DLIGLIRDFDLLKVLVKSKA 282
|
| >3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280 | Back alignment and structure |
|---|
Score = 91.4 bits (227), Expect = 1e-20
Identities = 57/297 (19%), Positives = 118/297 (39%), Gaps = 54/297 (18%)
Query: 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV-DFLENSANMDL 85
+ V + P+TT+ K L ++ + PV G K++GI+TS D+ DF+ + +L
Sbjct: 12 KKIVTVYPTTTIRKALMTMNENKYRRLPVVNAGN--NKVVGIITSMDIVDFMGGGSKYNL 69
Query: 86 KIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLL 145
EK + L ++ + T+ E + I A+ +
Sbjct: 70 IREKHERNFLAAINEPVREIMEENVITLKE-NADIDEAI------------------ETF 110
Query: 146 SQAGVDVVILDSSQGNSIYQI---EMIKYIKKEYPDMQVIGG----NVVTTDQAKNLIDA 198
V + + + I I ++I+ + + + +VI +V+ + L D
Sbjct: 111 LTKNVGGAPIVNDENQLISLITERDVIRALLDKIDENEVIDDYITRDVIVATPGERLKDV 170
Query: 199 GVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDV-------------DFLENSAN 245
+ +GF PV G+L +GI+TS D
Sbjct: 171 -ARTMV-----RNGFRRLPVVSEGRL----VGIITSTDFIKLLGSDWAFNHMQTGNVREI 220
Query: 246 MDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDL 302
++++E++M ++I+A+ G L++ I+ + G LP++++ + +I D+
Sbjct: 221 TNVRMEEIMKR--DVITAKEGDKLKKIAEIMVTNDIGALPVVDENLRIKGIITEKDV 275
|
| >3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280 | Back alignment and structure |
|---|
Score = 53.6 bits (129), Expect = 5e-08
Identities = 24/110 (21%), Positives = 46/110 (41%), Gaps = 20/110 (18%)
Query: 211 HGFCGFPVTENGKLGEKLLGIVTSRDV----------------DFLENSANMDLKIEKVM 254
+ + PV G K++GI+TS D+ A ++ + ++M
Sbjct: 33 NKYRRLPVVNAGN--NKVVGIITSMDIVDFMGGGSKYNLIREKHERNFLAAINEPVREIM 90
Query: 255 TNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304
+I+ + ++EA G PI+ND+ +LI+LI D+ +
Sbjct: 91 EE--NVITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLITERDVIR 138
|
| >3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 3e-07
Identities = 20/117 (17%), Positives = 40/117 (34%), Gaps = 6/117 (5%)
Query: 1 IIHHNCTPEYQANEVLKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGK 60
+I +++ + + RD + P L V + ++GF PV G
Sbjct: 130 LITERDVIRALLDKIDENEVIDDYITRDVIVATPGERLKDVARTMVRNGFRRLPVVSEG- 188
Query: 61 LGEKLLGIVTSRDVDFLENSANMDLKIEKDLSSPLTKKITLAAPLVSSPMDTVTESD 117
+L+GI+TS D ++ + + ++ + T E D
Sbjct: 189 ---RLVGIITSTDF--IKLLGSDWAFNHMQTGNVREITNVRMEEIMKRDVITAKEGD 240
|
| >3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 1e-06
Identities = 22/95 (23%), Positives = 47/95 (49%), Gaps = 7/95 (7%)
Query: 211 HGFCGFPVTENGKLGEKLLGIVTSRDV-DFLENSANMDLKIEKVMTNVNEIISAQAGISL 269
G P+ + +L+ ++T RDV L + + + I+ +T ++I A G L
Sbjct: 113 KNVGGAPIVNDE---NQLISLITERDVIRALLDKIDENEVIDDYITR--DVIVATPGERL 167
Query: 270 EEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304
++ + ++ +LP++++ G L+ +I TD K
Sbjct: 168 KDVARTMVRNGFRRLPVVSE-GRLVGIITSTDFIK 201
|
| >3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296 | Back alignment and structure |
|---|
Score = 88.3 bits (219), Expect = 2e-19
Identities = 56/308 (18%), Positives = 99/308 (32%), Gaps = 52/308 (16%)
Query: 26 IRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDL 85
I++P ++ LG + + G V K+ G++T+RD+ S D
Sbjct: 27 IKNPPILSKEDRLGSAFKKINEGGIGRIIVANE-----KIEGLLTTRDLLSTVESYCKDS 81
Query: 86 KIEKDLSSPLTKKITLAA---PLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRL 142
+ DL T I P+ AI + + G+ DK
Sbjct: 82 CSQGDLYHISTTPIIDYMTPNPVTVYNTSDEFT---AINIMVTRNFGSLPVVDINDKPV- 137
Query: 143 KLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQV---IGGNVVTTDQAKNLIDAG 199
G+ + + E + K V + V T + L A
Sbjct: 138 ------GI------------VTEREFLLLYKDLDEIFPVKVFMSTKVQTIYKEVRLDQA- 178
Query: 200 VDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDV--------DFLENSANMDLKIE 251
V + GF PV ++ K++GIVT + D L+ ++
Sbjct: 179 VKLMLR-----RGFRRLPVIDDDN---KVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVVK 230
Query: 252 KVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDS 311
VM +++ S+ A + + G L ILN + +I DL + +
Sbjct: 231 DVMVT--NLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALHHILV 288
Query: 312 SKDENNQL 319
+ +L
Sbjct: 289 MEKFKEKL 296
|
| >3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296 | Back alignment and structure |
|---|
Score = 70.2 bits (172), Expect = 2e-13
Identities = 21/155 (13%), Positives = 57/155 (36%), Gaps = 14/155 (9%)
Query: 211 HGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLE 270
F PV + +K +GIVT R+ L + ++ M+ ++ + + L+
Sbjct: 122 RNFGSLPVVDIN---DKPVGIVTEREFLLLYKDLDEIFPVKVFMST--KVQTIYKEVRLD 176
Query: 271 EANVILEKSKKGKLPILNDKGELIALIARTDLKKS--RDYPDSSKDENNQLIVGAAIGT- 327
+A ++ + +LP+++D +++ ++ + K + D +V + T
Sbjct: 177 QAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVVKDVMVTN 236
Query: 328 -----READ-KNRLKLLSQAGVDVVILDSSQGNSI 356
A + + +++ +
Sbjct: 237 LVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIR 271
|
| >1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 Length = 213 | Back alignment and structure |
|---|
Score = 85.6 bits (212), Expect = 3e-19
Identities = 13/152 (8%), Positives = 55/152 (36%), Gaps = 11/152 (7%)
Query: 211 HGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLE 270
+ V + G+V D+ ++D + ++ ++
Sbjct: 42 YQTNECIVKDREG---HFRGVVNKEDLLD----LDLDSSVFNKVSL--PDFFVHEEDNIT 92
Query: 271 EANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREA 330
A ++ + ++ LP+++++ L ++ D ++ + + V
Sbjct: 93 HALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIEALAMDVPGIRFSVLLEDKP-GE 151
Query: 331 DKNRLKLLSQAGVDVV-ILDSSQGNSIYQIEM 361
+ + L+ + ++++ ++ + G+ ++ +
Sbjct: 152 LRKVVDALALSNINILSVITTRSGDGKREVLI 183
|
| >1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 Length = 213 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 4e-06
Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 6/71 (8%)
Query: 10 YQANEVLKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIV 69
+ + +KVKK+ +D + S T+ + L +Q+ V + G+V
Sbjct: 7 HHHHHHMKVKKW---VTQDFPMVEESATVRECLHRMRQYQTNECIVKDREG---HFRGVV 60
Query: 70 TSRDVDFLENS 80
D+ L+
Sbjct: 61 NKEDLLDLDLD 71
|
| >3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A* Length = 122 | Back alignment and structure |
|---|
Score = 78.7 bits (195), Expect = 7e-18
Identities = 22/95 (23%), Positives = 44/95 (46%), Gaps = 9/95 (9%)
Query: 211 HGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMT-NVNEIISAQAGISL 269
H P+ + KL+GI+TS D+ A IE++MT NV I+A +
Sbjct: 30 HNINHLPIVDEHG---KLVGIITSWDIAKAL--AQNKKTIEEIMTRNV---ITAHEDEPV 81
Query: 270 EEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304
+ + + K +P+++D ++ ++ D+ +
Sbjct: 82 DHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDISR 116
|
| >3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A* Length = 122 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 4e-09
Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 26 IRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDL 85
+ P+ + ++ + ++ +H P+ + KL+GI+TS D+ A
Sbjct: 8 SKPPITAHSNISIMEAAKILIKHNINHLPIVDEHG---KLVGIITSWDIAKAL--AQNKK 62
Query: 86 KIE 88
IE
Sbjct: 63 TIE 65
|
| >2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133 | Back alignment and structure |
|---|
Score = 75.3 bits (186), Expect = 2e-16
Identities = 23/106 (21%), Positives = 48/106 (45%), Gaps = 7/106 (6%)
Query: 211 HGFCGFPVTENGKLGEKLLGIVTSRDVDF-LENSANMDLKIEKVMTNVNEIISAQAGISL 269
V + K +GI+T RD+ + +++ K E+ MT +I+ + +
Sbjct: 33 KNIGSVIVVDGNKP----VGIITERDIVKAIGKGKSLETKAEEFMTA--SLITIREDSPI 86
Query: 270 EEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDE 315
A ++ + LP+++DKG L +I+ D+ ++ D + E
Sbjct: 87 TGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDDMFETMGE 132
|
| >2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 7e-08
Identities = 10/64 (15%), Positives = 24/64 (37%), Gaps = 5/64 (7%)
Query: 26 IRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDF-LENSANMD 84
+ + L + ++ + V + K +GI+T RD+ + +++
Sbjct: 11 KTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGN----KPVGIITERDIVKAIGKGKSLE 66
Query: 85 LKIE 88
K E
Sbjct: 67 TKAE 70
|
| >2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334 | Back alignment and structure |
|---|
Score = 79.9 bits (197), Expect = 2e-16
Identities = 40/330 (12%), Positives = 102/330 (30%), Gaps = 86/330 (26%)
Query: 30 VCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD-VDFL----------- 77
+ + + L + + P+ ++ K G++T D V+ +
Sbjct: 35 IVFDVTLFVKTSLSLLTLNNIVSAPLWDSEA--NKFAGLLTMADFVNVIKYYYQSSSFPE 92
Query: 78 ------ENSANMDLKIEK-------------------DLSSPLTKKITLAAPLVSSPMDT 112
+ ++E+ D ++K PL+ +T
Sbjct: 93 AIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGET 152
Query: 113 VTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYI 172
+E +++ L+Q IL N + +
Sbjct: 153 GSEMIVSV------------------------LTQYR----ILKFISMNCKETAMLRVPL 184
Query: 173 KKEYPDMQVIGGNVVTTDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIV 232
+ N+ T + D +++ + P+ + LL +
Sbjct: 185 NQMTIGTWS---NLATASMETKVYDV----IKMLAE--KNISAVPIVNSEG---TLLNVY 232
Query: 233 TSRDVDFLENS---ANMDLKIEKVMT----NVNEIISAQAGISLEEANVILEKSKKGKLP 285
S DV L +N+DL + + + N + + + +A L+ ++ S+ +L
Sbjct: 233 ESVDVMHLIQDGDYSNLDLSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLF 292
Query: 286 ILNDKGELIALIARTDLKKSRDYPDSSKDE 315
++++ +L +++ D+ Y ++
Sbjct: 293 VVDENLKLEGILSLADILNYIIYDKTTTPG 322
|
| >2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334 | Back alignment and structure |
|---|
Score = 63.0 bits (153), Expect = 7e-11
Identities = 19/120 (15%), Positives = 41/120 (34%), Gaps = 15/120 (12%)
Query: 1 IIHHNCTPEYQANEVLKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGK 60
+ + + A + + + G + + T + V++M + P+ +
Sbjct: 167 LKFISMNCKETAMLRVPLNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEG 226
Query: 61 LGEKLLGIVTSRDVDFLENS---ANMDLKIEKDLSSPLTKKITLAAPLVSSPMDTVTESD 117
LL + S DV L +N+DL + + L K+ + T +D
Sbjct: 227 ---TLLNVYESVDVMHLIQDGDYSNLDLSVGEA----LLKRPANFDGVH-----TCRATD 274
|
| >3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* Length = 159 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 7e-14
Identities = 15/99 (15%), Positives = 39/99 (39%), Gaps = 8/99 (8%)
Query: 211 HGFCGFPVTENGKLGEKLLGIVTSRDVDF--LENSANMDLKIEKVMTNVNEIISAQAGIS 268
V + L+G+++ +D+ + + + +MT + I +
Sbjct: 45 EDVGTLFVVDRDA---VLVGVLSRKDLLRASIGQQELTSVPVHIIMTRMPNITVCRREDY 101
Query: 269 LEEANVILEKSKKGKLPILNDKG---ELIALIARTDLKK 304
+ + L + + LP++ D E+I + +T++ K
Sbjct: 102 VMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMTK 140
|
| >3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* Length = 159 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 3e-05
Identities = 7/63 (11%), Positives = 21/63 (33%), Gaps = 5/63 (7%)
Query: 28 DPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDF--LENSANMDL 85
PV I + ++ + V + L+G+++ +D+ + +
Sbjct: 25 IPVVIHENVSVYDAICTMFLEDVGTLFVVDRDA---VLVGVLSRKDLLRASIGQQELTSV 81
Query: 86 KIE 88
+
Sbjct: 82 PVH 84
|
| >3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* Length = 159 | Back alignment and structure |
|---|
Score = 39.6 bits (93), Expect = 6e-04
Identities = 6/47 (12%), Positives = 18/47 (38%)
Query: 28 DPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74
+ + + + + PV ++ G +++G VT ++
Sbjct: 92 NITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNM 138
|
| >1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184 | Back alignment and structure |
|---|
Score = 69.0 bits (169), Expect = 9e-14
Identities = 18/129 (13%), Positives = 47/129 (36%), Gaps = 15/129 (11%)
Query: 211 HGFCGFPVTENGKLGEKLLGIVTSRDV---DFLENSANMDLKIEKVMTNVNEIISAQAGI 267
+ G V ++ +G+++ R + N ++ I VM I ++
Sbjct: 38 NHLYGLVVKDDN---GNDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRK--PIPKVKSDY 92
Query: 268 SLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSS-------KDENNQLI 320
+++ L ++ + +++D G ++ ++ TDL + + + L
Sbjct: 93 DVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLSRASITDILLSHRTKDYQHLC 152
Query: 321 VGAAIGTRE 329
+G E
Sbjct: 153 PKCGVGVLE 161
|
| >1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 2e-07
Identities = 6/63 (9%), Positives = 24/63 (38%), Gaps = 3/63 (4%)
Query: 12 ANEVLKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTS 71
+ + + + +TT+ +++ ++ G V ++ +G+++
Sbjct: 2 PRGGHMFMRVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDD---NGNDVGLLSE 58
Query: 72 RDV 74
R +
Sbjct: 59 RSI 61
|
| >2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} Length = 138 | Back alignment and structure |
|---|
Score = 66.9 bits (164), Expect = 1e-13
Identities = 23/102 (22%), Positives = 52/102 (50%), Gaps = 12/102 (11%)
Query: 211 HGFCGFPVTENGKLGEKLLGIVTSRDVDF--LENSANMDLKIEKVMTNVNEIISAQAGIS 268
+ PV ++ K++GIVT+ D+ + + + ++ I VMT ++I+ S
Sbjct: 37 YKISSLPVIDDEN---KVIGIVTTTDIGYNLIRDKYTLETTIGDVMTK--DVITIHEDAS 91
Query: 269 LEEANVILEKSKK-----GKLPILNDKGELIALIARTDLKKS 305
+ EA ++ S K +LP+++ +L+ +I+ D+ ++
Sbjct: 92 ILEAIKKMDISGKKEEIINQLPVVDKNNKLVGIISDGDIIRT 133
|
| >2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} Length = 138 | Back alignment and structure |
|---|
Score = 52.6 bits (127), Expect = 2e-08
Identities = 13/77 (16%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Query: 14 EVLKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73
+ LK K K ++ + + + + ++ PV ++ K++GIVT+ D
Sbjct: 3 DTLKNIKVKDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDDEN---KVIGIVTTTD 59
Query: 74 VDF--LENSANMDLKIE 88
+ + + + ++ I
Sbjct: 60 IGYNLIRDKYTLETTIG 76
|
| >2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Length = 160 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 5e-13
Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 18/105 (17%)
Query: 211 HGFCGFPVT-ENGKLGEKLLGIVTSRDVDFLENSA----------NMDLKIEKVMTNVNE 259
P+ N KL LGIV+ RD+ + S+ + + +VM +
Sbjct: 34 LDIRHVPIVDANKKL----LGIVSQRDLLAAQESSLQRSAQGDSLAFETPLFEVMHT--D 87
Query: 260 IISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304
+ S L+E+ + ++K K G LP++ K L+ +I +D
Sbjct: 88 VTSVAPQAGLKESAIYMQKHKIGCLPVV-AKDVLVGIITDSDFVT 131
|
| >2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Length = 160 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 2e-09
Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 5/67 (7%)
Query: 15 VLKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVT-ENGKLGEKLLGIVTSRD 73
+ + K + R P + + TL + + P+ N KLLGIV+ RD
Sbjct: 1 MSLMIKVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANK----KLLGIVSQRD 56
Query: 74 VDFLENS 80
+ + S
Sbjct: 57 LLAAQES 63
|
| >2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Length = 160 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 2e-04
Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 4/48 (8%)
Query: 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74
D +AP L + ++H PV L+GI+T D
Sbjct: 86 TDVTSVAPQAGLKESAIYMQKHKIGCLPVVAKD----VLVGIITDSDF 129
|
| >2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Length = 160 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 2e-04
Identities = 13/83 (15%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 245 NMDLKIEKVMT-NVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLK 303
++ +K+E +MT + + +L +A ++E +PI++ +L+ ++++ DL
Sbjct: 2 SLMIKVEDMMTRHP---HTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLL 58
Query: 304 KSRDYPDSSKDENNQLIVGAAIG 326
+++ + + L +
Sbjct: 59 AAQESSLQRSAQGDSLAFETPLF 81
|
| >2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330 | Back alignment and structure |
|---|
Score = 69.2 bits (169), Expect = 6e-13
Identities = 35/288 (12%), Positives = 97/288 (33%), Gaps = 27/288 (9%)
Query: 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD-VDFL-ENSANMD 84
V S + K +G P+ ++ K + +G++T D ++ L +
Sbjct: 45 SKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKK--QSFVGMLTITDFINILHRYYKSAL 102
Query: 85 LKIEKDLSSPLTKKITLAAPLVSSPMDTVTESDM---AIAMALCGGIGAAIGTREADKYR 141
++I + + + P+ ++ + A++ + I
Sbjct: 103 VQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNT 162
Query: 142 LKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVD 201
L +L+ ++ + E + +E N+ + A +
Sbjct: 163 LYILTHK--RILKFLKLFITEFPKPEFMSKSLEELQIG--TYANIAMVRTTTPVYVA-LG 217
Query: 202 GLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFL---ENSANMDLKIEKVMTN-- 256
H PV + +++ I + DV L + N+D+ + K + +
Sbjct: 218 IFVQ-----HRVSALPVVDEKG---RVVDIYSKFDVINLAAEKTYNNLDVSVTKALQHRS 269
Query: 257 --VNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDL 302
++ +LE L +++ +L ++++ + +++ +D+
Sbjct: 270 HYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDI 317
|
| >2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330 | Back alignment and structure |
|---|
Score = 46.9 bits (111), Expect = 1e-05
Identities = 26/156 (16%), Positives = 54/156 (34%), Gaps = 17/156 (10%)
Query: 158 SQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGLRVGSHGCHGFCGFP 217
S IY++E K +Q +V +L DA + + H P
Sbjct: 100 SALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAV---SSLIRNKIHRL---P 153
Query: 218 VTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNE---------IISAQAGIS 268
V + L I+T + + + + M+ E I +
Sbjct: 154 VIDPES--GNTLYILTHKRILKFLKLFITEFPKPEFMSKSLEELQIGTYANIAMVRTTTP 211
Query: 269 LEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304
+ A I + + LP++++KG ++ + ++ D+
Sbjct: 212 VYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVIN 247
|
| >3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323 | Back alignment and structure |
|---|
Score = 68.4 bits (167), Expect = 1e-12
Identities = 38/291 (13%), Positives = 97/291 (33%), Gaps = 37/291 (12%)
Query: 30 VCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV-----DFLENSANMD 84
+ + S + K L + Q+ P+ ++ + G++T+ D + N +
Sbjct: 43 IVLDTSLLVKKSLNVLLQNSIVSAPLWDSKT--SRFAGLLTTTDFINVIQYYFSNPDKFE 100
Query: 85 LKIEKDLSSPLTKKITLAAPLVS----SPMDTVTESDMAIAMALCGGI-GAAIGTREADK 139
L + L + L + P + E A L + ++ +
Sbjct: 101 LVDKLQLDGLKDIERALGVDQLDTASIHPSRPLFE---ACLKMLESRSGRIPLIDQDEET 157
Query: 140 YRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAG 199
+R ++S + + ++ E + N+ + +ID
Sbjct: 158 HREIVVSV----LTQYRILKFVALNCRETHFLKIPIGDLNIITQDNMKSCQMTTPVIDV- 212
Query: 200 VDGLRVGSHGCHGFCGFP-VTENGKLGEKLLGIVTSRDVDFLENSA---NMDLKIEKVMT 255
+ L P + ENG L + + + DV L ++ L + + +
Sbjct: 213 IQMLTQ-----GRVSSVPIIDENGYL----INVYEAYDVLGLIKGGIYNDLSLSVGEALM 263
Query: 256 NVNE----IISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDL 302
++ + + L + K++ + +++D G L+ ++ +D+
Sbjct: 264 RRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDI 314
|
| >3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323 | Back alignment and structure |
|---|
Score = 60.7 bits (147), Expect = 3e-10
Identities = 35/289 (12%), Positives = 89/289 (30%), Gaps = 46/289 (15%)
Query: 87 IEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLS 146
++ L + + L +VS+P+ S A + I ++
Sbjct: 45 LDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRFAGLLTTTDFINV-----------IQYYF 93
Query: 147 QAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGLRVG 206
++D Q + + IE + + D I + + ++++ + +
Sbjct: 94 SNPDKFELVDKLQLDGLKDIERALGV--DQLDTASIHPSRPLFEACLKMLESRSGRIPLI 151
Query: 207 SHGCHGFCGFPVTENGKLGEKLLGIVTSRDV-----DFLENSANMDLKIEKVMTNVNE-I 260
+ E ++ ++T + + + + I + + +
Sbjct: 152 DQ-----------DEETHREIVVSVLTQYRILKFVALNCRETHFLKIPIGDLNIITQDNM 200
Query: 261 ISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLI 320
S Q + + +L + + +PI+++ G LI + D+ + L
Sbjct: 201 KSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLG---LIKGGIYNDLSLS 257
Query: 321 VGAAIGTREADKNR-------------LKLLSQAGVDVVILDSSQGNSI 356
VG A+ R D + + +A V + G +
Sbjct: 258 VGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLV 306
|
| >3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 1e-06
Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 11/103 (10%)
Query: 16 LKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFP-VTENGKLGEKLLGIVTSRDV 74
+ + + +T + V+QM Q P + ENG L+ + + DV
Sbjct: 187 IPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENG----YLINVYEAYDV 242
Query: 75 DFLENSANMDLKIEKDLSSPLTKKITLAAPLVSSPMDTVTESD 117
L I DLS + + + + T T++D
Sbjct: 243 LGLIKG-----GIYNDLSLSVGEALM-RRSDDFEGVYTCTKND 279
|
| >2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144 | Back alignment and structure |
|---|
Score = 60.6 bits (148), Expect = 3e-11
Identities = 15/100 (15%), Positives = 39/100 (39%), Gaps = 12/100 (12%)
Query: 211 HGFCGFPVT-ENGKLGEKLLGIVTSRDVDFLENS---ANMDLKIEKVMT----NVNEIIS 262
P+ ENG L + + + DV L ++ L + + + + + +
Sbjct: 40 GRVSSVPIIDENGYL----INVYEAYDVLGLIKGGIYNDLSLSVGEALMRRSDDFEGVYT 95
Query: 263 AQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDL 302
L + K++ + +++D G L+ ++ +D+
Sbjct: 96 CTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDI 135
|
| >2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 1e-07
Identities = 20/102 (19%), Positives = 36/102 (35%), Gaps = 11/102 (10%)
Query: 17 KVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVT-ENGKLGEKLLGIVTSRDVD 75
+ + +T + V+QM Q P+ ENG L+ + + DV
Sbjct: 9 PIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENG----YLINVYEAYDVL 64
Query: 76 FLENSANMDLKIEKDLSSPLTKKITLAAPLVSSPMDTVTESD 117
L + I DLS + + + + T T++D
Sbjct: 65 GL-----IKGGIYNDLSLSVGEALMRRSDDFEGVY-TCTKND 100
|
| >1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 Length = 223 | Back alignment and structure |
|---|
Score = 62.3 bits (151), Expect = 3e-11
Identities = 20/134 (14%), Positives = 46/134 (34%), Gaps = 15/134 (11%)
Query: 334 RLKLLSQAGVDVVILDSSQGN--SIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLN 391
+ L ++ +V+ LD++ E++ +I+ P+++++ AT+
Sbjct: 80 EVDELIESQCEVIALDATLQQRPKETLDELVSYIRTHAPNVEIMADI--------ATVEE 131
Query: 392 FIYQIE----MIKFIKKEY-PDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVM 446
I Y Q + + VIA+G V +
Sbjct: 132 AKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIAEGNVITPDMYK 191
Query: 447 KALALGASTAMMGS 460
+ + LG +++G
Sbjct: 192 RVMDLGVHCSVVGG 205
|
| >1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 Length = 223 | Back alignment and structure |
|---|
Score = 49.2 bits (117), Expect = 1e-06
Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 141 RLKLLSQAGVDVVILDSSQGN--SIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDA 198
+ L ++ +V+ LD++ E++ YI+ P+ I ++ T ++AKN
Sbjct: 80 EVDELIESQCEVIALDATLQQRPKETLDELVSYIRTHAPN-VEIMADIATVEEAKNAARL 138
Query: 199 GVDGLRVGSHG 209
G D + HG
Sbjct: 139 GFDYIGTTLHG 149
|
| >1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 Length = 125 | Back alignment and structure |
|---|
Score = 59.8 bits (146), Expect = 4e-11
Identities = 21/94 (22%), Positives = 45/94 (47%), Gaps = 9/94 (9%)
Query: 211 HGFCGFPVTENGKLGEKLLGIVTSRDVD--FLENSANMDLKIEKVMTNVNEIISAQAGIS 268
+ V + G +GIVT+ DV E ++K+ +VM ++++ +
Sbjct: 30 NAKGSSVVVKEGVR----VGIVTTWDVLEAIAEGDDLAEVKVWEVME--RDLVTISPRAT 83
Query: 269 LEEANVILEKSKKGKLPILNDKGELIALIARTDL 302
++EA + K+ +L + + E+I +I+ TD+
Sbjct: 84 IKEAAEKMVKNVVWRLLVE-EDDEIIGVISATDI 116
|
| >1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 Length = 125 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 6e-07
Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 7/59 (11%)
Query: 16 LKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74
++V+ D I + +L VL+ ++ V + G +GIVT+ DV
Sbjct: 1 MRVEDVMV---TDVDTIDITASLEDVLRNYVENAKGSSVVVKEG----VRVGIVTTWDV 52
|
| >1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 Length = 125 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 3e-05
Identities = 10/48 (20%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74
RD V I+P T+ + + ++ V E+ +++G++++ D+
Sbjct: 73 RDLVTISPRATIKEAAEKMVKNVVWRLLVEEDD----EIIGVISATDI 116
|
| >3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} Length = 128 | Back alignment and structure |
|---|
Score = 58.2 bits (141), Expect = 2e-10
Identities = 14/93 (15%), Positives = 38/93 (40%), Gaps = 7/93 (7%)
Query: 211 HGFCGFPVTENGKLGEKLLGIVTSRDV-DFLENSANMDLKIEKVMTNVNEIISAQAGISL 269
G PV + + LG+V + + + + K+ + + + S + G L
Sbjct: 34 SGCACAPVLDGERY----LGMVHLSRLLEGRKGWPTVKEKLGEELLE--TVRSYRPGEQL 87
Query: 270 EEANVILEKSKKGKLPILNDKGELIALIARTDL 302
+ + + +K +P+ ++ G +++R +
Sbjct: 88 FDNLISVAAAKCSVVPLADEDGRYEGVVSRKRI 120
|
| >3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} Length = 128 | Back alignment and structure |
|---|
Score = 39.3 bits (92), Expect = 5e-04
Identities = 8/63 (12%), Positives = 18/63 (28%), Gaps = 5/63 (7%)
Query: 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV-DFLENSANMDL 85
D + + G PV + + LG+V + + + +
Sbjct: 13 TDYPVFTLGGSTADAARRLAASGCACAPVLDGE----RYLGMVHLSRLLEGRKGWPTVKE 68
Query: 86 KIE 88
K+
Sbjct: 69 KLG 71
|
| >1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 4e-10
Identities = 12/110 (10%), Positives = 36/110 (32%), Gaps = 25/110 (22%)
Query: 211 HGFCGFPVT-ENGKLGEKLLGIVTSRDV-----------------DFLENSANMDLKIEK 252
+ KL +G++ + + +
Sbjct: 45 DPVTRTVYVARDNKL----VGMIPVMHLLKVSGFHFFGFIPKEELIRSSMKRLIAKNASE 100
Query: 253 VMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDL 302
+M + + LEEA ++ + ++P++++KGE++ + ++
Sbjct: 101 IMLDP---VYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEI 147
|
| >1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 5e-08
Identities = 11/116 (9%), Positives = 37/116 (31%), Gaps = 16/116 (13%)
Query: 10 YQANEVLKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVT-ENGKLGEKLLGI 68
+ + +KVK P + T + +++ + + KL+G+
Sbjct: 7 HHHHHHMKVKDVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDN----KLVGM 62
Query: 69 VTSRDV---------DFLENSANMDLKIEKDLSSPLTKKITLAAPLVSSPMDTVTE 115
+ + F+ + +++ ++ ++ + P+ + E
Sbjct: 63 IPVMHLLKVSGFHFFGFIPKEELIRSSMKRLIAKNASEIML--DPVYVHMDTPLEE 116
|
| >2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A Length = 141 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 7e-10
Identities = 14/92 (15%), Positives = 36/92 (39%), Gaps = 5/92 (5%)
Query: 217 PVTENGKLGEKLLGIVTSRD-VDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVI 275
+T + + +V+ RD + + ++D + + I+ + A
Sbjct: 40 VLTARDNPK-RPVAVVSERDILRAVAQRLDLDGPAMPIANSP---ITVLDTDPVHVAAEK 95
Query: 276 LEKSKKGKLPILNDKGELIALIARTDLKKSRD 307
+ + + ++N GEL+ +++ DL R
Sbjct: 96 MRRHNIRHVVVVNKNGELVGVLSIRDLCFERA 127
|
| >2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A Length = 141 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 2e-06
Identities = 13/71 (18%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Query: 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD-VDFLENSANMDL 85
R PV + + T+ +V ++ +T + + +V+ RD + + ++D
Sbjct: 13 RPPVSLPETATIREVATELAKNRVGLAVLTARDNPK-RPVAVVSERDILRAVAQRLDLDG 71
Query: 86 KIEKDLSSPLT 96
+SP+T
Sbjct: 72 PAMPIANSPIT 82
|
| >2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1 Length = 135 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 2e-09
Identities = 29/131 (22%), Positives = 60/131 (45%), Gaps = 16/131 (12%)
Query: 179 MQVIGGNVVTTDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVD 238
+Q G VV ++ +A + + + G V ++ KL +GI+T RD
Sbjct: 12 LQEKGHTVVAIGPDDSVFNA-MQKMAADNIGA-----LLVMKDEKL----VGILTERDFS 61
Query: 239 ---FLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIA 295
+L + D +++++MT ++ + E+ ++ + + LP+L D G++I
Sbjct: 62 RKSYLLDKPVKDTQVKEIMT--RQVAYVDLNNTNEDCMALITEMRVRHLPVL-DDGKVIG 118
Query: 296 LIARTDLKKSR 306
L++ DL K
Sbjct: 119 LLSIGDLVKDA 129
|
| >2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1 Length = 135 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 7e-06
Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 4/60 (6%)
Query: 15 VLKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74
+ VK V I P ++ +Q V ++ KL+GI+T RD
Sbjct: 5 MKTVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDE----KLVGILTERDF 60
|
| >2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1 Length = 135 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 1e-04
Identities = 8/48 (16%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Query: 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74
R + + T + + + PV ++G K++G+++ D+
Sbjct: 82 RQVAYVDLNNTNEDCMALITEMRVRHLPVLDDG----KVIGLLSIGDL 125
|
| >2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 3e-09
Identities = 20/102 (19%), Positives = 40/102 (39%), Gaps = 14/102 (13%)
Query: 211 HGFCGFPVTENGKLGEKLLGIVTSRDV-------DFLENSANMDLKIEKVMTNVNEIISA 263
G+ PV + KL G+++ + + +E +K+E+VM I
Sbjct: 42 TGYSAIPVLDTSY---KLHGLISMTMMMDAILGLERIEFERLETMKVEEVMNR--NIPRL 96
Query: 264 QAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKS 305
+ SL +A ++ + + ND G + R ++ K
Sbjct: 97 RLDDSLMKAVGLIVN--HPFVCVENDDGYFAGIFTRREVLKQ 136
|
| >2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 3e-05
Identities = 15/77 (19%), Positives = 37/77 (48%)
Query: 240 LENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIAR 299
E++ M + ++ + +++ Q G L+ A ++L K+ +P+L+ +L LI+
Sbjct: 3 WEHNEFMQMTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISM 62
Query: 300 TDLKKSRDYPDSSKDEN 316
T + + + + E
Sbjct: 63 TMMMDAILGLERIEFER 79
|
| >2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 1e-04
Identities = 11/89 (12%), Positives = 32/89 (35%), Gaps = 5/89 (5%)
Query: 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLK 86
+ P L L + + G+ PV + KL G+++ + ++ ++
Sbjct: 21 DKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSY---KLHGLISMTMM--MDAILGLERI 75
Query: 87 IEKDLSSPLTKKITLAAPLVSSPMDTVTE 115
+ L + +++ D++ +
Sbjct: 76 EFERLETMKVEEVMNRNIPRLRLDDSLMK 104
|
| >1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5 Length = 234 | Back alignment and structure |
|---|
Score = 56.5 bits (136), Expect = 3e-09
Identities = 22/143 (15%), Positives = 49/143 (34%), Gaps = 27/143 (18%)
Query: 330 ADKNRLKLLSQAGVDVVILDSSQ---GNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPR 386
A + L+ + V+ +D ++ + + I+ +K++YP+ ++
Sbjct: 89 ATMTEVDQLAALNIAVIAMDCTKRDRHDGLDIASFIRQVKEKYPNQLLMAD--------- 139
Query: 387 ATLLNFIYQIEMIKFIKKEYPDMQVIGRNG---------TAVYRVAEYASRRGVPVIADG 437
I + + D +G + E + G+ VIA+G
Sbjct: 140 ------ISTFDEGLVAHQAGIDFVGTTLSGYTPYSRQEAGPDVALIEALCKAGIAVIAEG 193
Query: 438 GVQSVGHVMKALALGASTAMMGS 460
+ S K LG + ++G
Sbjct: 194 KIHSPEEAKKINDLGVAGIVVGG 216
|
| >1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5 Length = 234 | Back alignment and structure |
|---|
Score = 49.9 bits (119), Expect = 6e-07
Identities = 14/72 (19%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 141 RLKLLSQAGVDVVILDSSQ---GNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLID 197
+ L+ + V+ +D ++ + + I+ +K++YP+ Q++ ++ T D+
Sbjct: 93 EVDQLAALNIAVIAMDCTKRDRHDGLDIASFIRQVKEKYPN-QLLMADISTFDEGLVAHQ 151
Query: 198 AGVDGLRVGSHG 209
AG+D + G
Sbjct: 152 AGIDFVGTTLSG 163
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 58.3 bits (140), Expect = 5e-09
Identities = 98/691 (14%), Positives = 188/691 (27%), Gaps = 239/691 (34%)
Query: 3 HHNCTPE-----YQANEVLKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTE 57
HH+ E YQ ++L V ++ F+ + C K +Q
Sbjct: 4 HHHMDFETGEHQYQYKDILSV--FEDAFVDNFDC--------KDVQ-------------- 39
Query: 58 NGKLGEKLLGIVTSRDVDFLENSANMDLKIEKDLSSPLTKKITLAAPLVSSPMDTVTESD 117
+ I++ ++D + S + ++ + L L+S + V +
Sbjct: 40 -----DMPKSILSKEEIDHIIMSKD-----------AVSGTLRLFWTLLSKQEEMVQK-- 81
Query: 118 MAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYP 177
+ Y+ L+S I + S+ I+ + Y
Sbjct: 82 -------------FVEEVLRINYKF-LMSP------IKTEQRQPSMMTRMYIEQRDRLYN 121
Query: 178 DMQVIG-GNVVTTDQAKNLIDAGVDGLRVGSH-GCHGFCGFPVTENGKLGEKLLGIVTSR 235
D QV NV L A + LR + G G GK + +
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQA-LLELRPAKNVLIDGVLGS-----GK---TWVALDVCL 172
Query: 236 DVDFLENSAN----MDL----KIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPIL 287
++L E V+ + +++ Q + + + S KL I
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY-QIDPNWTSRS---DHSSNIKLRIH 228
Query: 288 NDKGELIALIARTDLKKS----RDYPDS---------------SKDENNQLIVGAAIGTR 328
+ + EL L+ + + ++ ++ + + AA T
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH 288
Query: 329 EA---------DKNRLKLLSQAGVDVVILD-SSQGNSI--YQIEMIKFIKKEYPDM---- 372
+ LL + +D D + + ++ +I ++
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKY-LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW 347
Query: 373 ---------QVIGG--NVLFG------YQ-----------PRATL----LNFIYQIEMI- 399
+I NVL + P L + I M+
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV 407
Query: 400 --KFIKK------------EYPDMQVIGR----NGTAVYR--VAEYASRRG------VPV 433
K K P + + + N A++R V Y + +P
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP 467
Query: 434 IADGGV-QSVGHVMKALALGASTAMMGSLL------------AGTSEAPGEYFFSDGVRL 480
D +GH +K + + + T+ + +L
Sbjct: 468 YLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL 527
Query: 481 KKYRGMGSLEAMSRKDGGAAAMDRYF---HNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQ 537
K Y+ Y + ++L ++L FLP
Sbjct: 528 KFYK-------------------PYICDNDPKYERL------------VNAILDFLP--- 553
Query: 538 CGLKHGCQDIGAKSLSNLR-AMMYSGELKFE 567
K I +K LR A+M E FE
Sbjct: 554 ---KIEENLICSKYTDLLRIALMAEDEAIFE 581
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.1 bits (116), Expect = 4e-06
Identities = 70/440 (15%), Positives = 136/440 (30%), Gaps = 117/440 (26%)
Query: 235 RDV--DFLEN-SANMDLK-IEKVMTNVNEIISAQAGISLEEANVIL-EKSKKGK----LP 285
+D+ F + N D K ++ + ++ +S EE + I+ K
Sbjct: 19 KDILSVFEDAFVDNFDCKDVQDMPKSI---------LSKEEIDHIIMSKDAVSGTLRLFW 69
Query: 286 ILNDKGE-LIALIARTDLKKSRDYP---DSSKDENNQ--LIVGAAIGTREADKN------ 333
L K E ++ L+ +Y K E Q ++ I R+ N
Sbjct: 70 TLLSKQEEMVQKFVEEVLRI--NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127
Query: 334 -----RLKLLSQ---------------------AGVDVVILDSSQGNSI-----YQIEMI 362
RL+ + +G V LD + ++I +
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL 187
Query: 363 KFIKKEYPDMQVIGGNVLF-----GYQPRA-TLLNFIYQIEMIK------FIKKEYPDMQ 410
P+ + L + R+ N +I I+ K Y +
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247
Query: 411 VIGRNGTAVY--RVAEY---ASR-----RGVPVIADGGVQSVGHV-MKALALGASTAMMG 459
++ N V + + + R V + H+ + ++ + +
Sbjct: 248 LVLLN---VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304
Query: 460 SLLA-----GTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLK 514
SLL + P E ++ RL S+ A S +DG A D + H DKL
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNPRRL-------SIIAESIRDG-LATWDNWKHVNCDKLT 356
Query: 515 VAQGVSGAIVDKGSVLRFLPYLQCGL--KHGCQDIGAKSLSNLRAMMYSGEL-----KFE 567
S +++ + R + + + + I LS + + ++ K
Sbjct: 357 TIIESSLNVLEP-AEYRKM-FDRLSVFPPS--AHIPTILLSLIWFDVIKSDVMVVVNKLH 412
Query: 568 KRTLCAQN--EG--SVHGLY 583
K +L + E S+ +Y
Sbjct: 413 KYSLVEKQPKESTISIPSIY 432
|
| >2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 Length = 138 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 1e-08
Identities = 18/109 (16%), Positives = 42/109 (38%), Gaps = 10/109 (9%)
Query: 211 HGFCGFPVTENGKLGEKLLGIVTSRDVD--FLENSANMDLKIEKVMTNVNEIISAQAGIS 268
V + ++G T D+ + D+ +E++MT +I+A
Sbjct: 36 FDVGSLVVINDD---GNVVGFFTKSDIIRRVIVPGLPYDIPVERIMT--RNLITANVNTP 90
Query: 269 LEEANVILEKSKKGKLPILNDKGELIALIARTDLKK--SRDYPDSSKDE 315
L E + + + + I ++G+++ + +DL + R + E
Sbjct: 91 LGEVLRKMAEHRIKHILIE-EEGKIVGIFTLSDLLEASRRRLETAISAE 138
|
| >2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 Length = 138 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 2e-05
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74
R+ + +T LG+VL+ +H + E G K++GI T D+
Sbjct: 80 RNLITANVNTPLGEVLRKMAEHRIKHILIEEEG----KIVGIFTLSDL 123
|
| >2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 Length = 138 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 8e-05
Identities = 7/48 (14%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Query: 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74
+ + + PST++ + ++ + V + ++G T D+
Sbjct: 15 KKLLGVKPSTSVQEASRLMMEFDVGSLVVIND---DGNVVGFFTKSDI 59
|
| >4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria} Length = 157 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 3e-08
Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 12/106 (11%)
Query: 217 PVTENGKLGEKLLGIVTSRDVD---FLENSANMDLKIEKVMTNVNEIISAQAGISLEEAN 273
V + + GIVT RD L+ ++ ++E++MT ++ + S +E
Sbjct: 48 LVVDGDDI----AGIVTERDYARKVVLQERSSKATRVEEIMT--AKVRYVEPSQSTDECM 101
Query: 274 VILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQL 319
++ + + LP+L D G+LI LI+ DL KS + +QL
Sbjct: 102 ALMTEHRMRHLPVL-DGGKLIGLISIGDLVKSV--IADQQFTISQL 144
|
| >4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria} Length = 157 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 3e-06
Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 4/67 (5%)
Query: 8 PEYQANEVLKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLG 67
P + V ++ K K R + + + +++ + G V + + G
Sbjct: 2 PGSMSTTVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVDGD----DIAG 57
Query: 68 IVTSRDV 74
IVT RD
Sbjct: 58 IVTERDY 64
|
| >4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria} Length = 157 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 3e-04
Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74
+ PS + + + + +H PV + G KL+G+++ D+
Sbjct: 86 AKVRYVEPSQSTDECMALMTEHRMRHLPVLDGG----KLIGLISIGDL 129
|
| >3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 4e-08
Identities = 18/102 (17%), Positives = 41/102 (40%), Gaps = 14/102 (13%)
Query: 211 HGFCGFPVTENGKLGEKLLGIVTSRDV-------DFLENSANMDLKIEKVMTNVNEIISA 263
G+ PV + KL G++++ + + +E ++K+E+VM +I
Sbjct: 46 SGYSAIPVLDPMY---KLHGLISTAMILDGILGLERIEFERLEEMKVEQVMKQ--DIPVL 100
Query: 264 QAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKS 305
+ S +A + + +N+ G ++ R + K
Sbjct: 101 KLEDSFAKALEMTID--HPFICAVNEDGYFEGILTRRAILKL 140
|
| >3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 9e-05
Identities = 15/71 (21%), Positives = 32/71 (45%)
Query: 246 MDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKS 305
+ ++ +M + ++ Q G LE A ++L KS +P+L+ +L LI+ +
Sbjct: 13 QQIFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMILDG 72
Query: 306 RDYPDSSKDEN 316
+ + E
Sbjct: 73 ILGLERIEFER 83
|
| >3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150 | Back alignment and structure |
|---|
Score = 39.7 bits (93), Expect = 6e-04
Identities = 12/89 (13%), Positives = 31/89 (34%), Gaps = 5/89 (5%)
Query: 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLK 86
+ L L + + G+ PV + KL G++++ + L+ ++
Sbjct: 25 EKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMY---KLHGLISTAMI--LDGILGLERI 79
Query: 87 IEKDLSSPLTKKITLAAPLVSSPMDTVTE 115
+ L +++ V D+ +
Sbjct: 80 EFERLEEMKVEQVMKQDIPVLKLEDSFAK 108
|
| >1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A Length = 133 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 5e-08
Identities = 15/95 (15%), Positives = 41/95 (43%), Gaps = 9/95 (9%)
Query: 211 HGFCGFPVTENGKLGEKLLGIVTSRDVD---FLENSANMDLKIEKVMTNVNEIISAQAGI 267
H P+ + ++L G++T RD+ ++ + I A
Sbjct: 37 HDIGALPICGDD---DRLHGMLTDRDIVIKGLAAGLDPNTATAGELAR--DSIYYVDANA 91
Query: 268 SLEEANVILEKSKKGKLPILNDKGELIALIARTDL 302
S++E ++E+ + ++P++++ L+ ++ D+
Sbjct: 92 SIQEMLNVMEEHQVRRVPVISE-HRLVGIVTEADI 125
|
| >1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A Length = 133 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 2e-05
Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74
C+ TL Q ++H P+ + ++L G++T RD+
Sbjct: 16 AGVTCVGEHETLTAAAQYMREHDIGALPICGD---DDRLHGMLTDRDI 60
|
| >1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A Length = 133 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 1e-04
Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74
+ + ++ ++L + ++H PV +L+GIVT D+
Sbjct: 82 DSIYYVDANASIQEMLNVMEEHQVRRVPVISEH----RLVGIVTEADI 125
|
| >3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} Length = 232 | Back alignment and structure |
|---|
Score = 52.8 bits (126), Expect = 6e-08
Identities = 19/135 (14%), Positives = 44/135 (32%), Gaps = 12/135 (8%)
Query: 340 QAGVDVVILD-SSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEM 398
QAG ++ +D +++ + ++ I + + + +++ + + +
Sbjct: 99 QAGAAIIAVDGTARQRPVAVEALLARIHHHH---LLTMADC-------SSVDDGLACQRL 148
Query: 399 -IKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAM 457
I + + G VIA+G S +A+ GA
Sbjct: 149 GADIIGTTMSGYTTPDTPEEPDLPLVKALHDAGCRVIAEGRYNSPALAAEAIRYGAWAVT 208
Query: 458 MGSLLAGTSEAPGEY 472
+GS + G Y
Sbjct: 209 VGSAITRLEHICGWY 223
|
| >1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 7e-08
Identities = 14/99 (14%), Positives = 36/99 (36%), Gaps = 14/99 (14%)
Query: 211 HGFCGFPVTENGKLGEKLLGIVTSRDV-------DFLENSANMDLKIEKVMTNVNEIISA 263
G+ PV + +L G++ + + + +E + +E+VM +I
Sbjct: 45 TGYTAIPVLDPSY---RLHGLIGTNMIMNSIFGLERIEFEKLDQITVEEVMLT--DIPRL 99
Query: 264 QAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDL 302
+ + ++ G + + ND+ + R +
Sbjct: 100 HINDPIMKGFGMVIN--NGFVCVENDEQVFEGIFTRRVV 136
|
| >1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 2e-04
Identities = 15/71 (21%), Positives = 32/71 (45%)
Query: 246 MDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKS 305
++ + + M +++ Q G +LE A ++L K+ +P+L+ L LI + S
Sbjct: 12 LEATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNS 71
Query: 306 RDYPDSSKDEN 316
+ + E
Sbjct: 72 IFGLERIEFEK 82
|
| >1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159 | Back alignment and structure |
|---|
Score = 39.7 bits (93), Expect = 7e-04
Identities = 10/89 (11%), Positives = 30/89 (33%), Gaps = 5/89 (5%)
Query: 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLK 86
+ L L + + G+ PV + +L G++ + + + + ++
Sbjct: 24 DKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSY---RLHGLIGTNMI--MNSIFGLERI 78
Query: 87 IEKDLSSPLTKKITLAAPLVSSPMDTVTE 115
+ L +++ L D + +
Sbjct: 79 EFEKLDQITVEEVMLTDIPRLHINDPIMK 107
|
| >3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} Length = 165 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 9e-08
Identities = 26/151 (17%), Positives = 57/151 (37%), Gaps = 31/151 (20%)
Query: 179 MQVIGGNVVTTDQAKNLIDA-------GVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGI 231
+ G +VVT ++ +A + + VT+ +LGI
Sbjct: 30 LDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAV-------------VVTDADG---VVLGI 73
Query: 232 VTSRDVDF---LENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILN 288
T RD+ + +A++ + MT ++ Q + ++ I+ + +P+
Sbjct: 74 FTERDLVKAVAGQGAASLQQSVSVAMT--KNVVRCQHNSTTDQLMEIMTGGRFRHVPVE- 130
Query: 289 DKGELIALIARTDLKKSRDYPDSSKDENNQL 319
+ G L +I+ D+ K+R + E +
Sbjct: 131 ENGRLAGIISIGDVVKARI--GEIEAEAEHI 159
|
| >3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} Length = 165 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 9e-05
Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74
++ V ++T +++++ F PV ENG +L GI++ DV
Sbjct: 101 KNVVRCQHNSTTDQLMEIMTGGRFRHVPVEENG----RLAGIISIGDV 144
|
| >3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} Length = 165 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 2e-04
Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
Query: 17 KVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74
VK RD V + P ++G+ H VT+ +LGI T RD+
Sbjct: 25 FVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADG---VVLGIFTERDL 79
|
| >3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} Length = 229 | Back alignment and structure |
|---|
Score = 50.0 bits (119), Expect = 4e-07
Identities = 23/141 (16%), Positives = 46/141 (32%), Gaps = 12/141 (8%)
Query: 334 RLKLLSQAGVDVVILDS-SQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNF 392
+ L+QAG D++ D+ + + ++ I+ + + +T+
Sbjct: 93 DVDALAQAGADIIAFDASFRSRPVDIDSLLTRIRLHG---LLAMADC-------STVNEG 142
Query: 393 IYQIEM-IKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALAL 451
I + I+FI + S G VIA+G + A+
Sbjct: 143 ISCHQKGIEFIGTTLSGYTGPITPVEPDLAMVTQLSHAGCRVIAEGRYNTPALAANAIEH 202
Query: 452 GASTAMMGSLLAGTSEAPGEY 472
GA +GS + +
Sbjct: 203 GAWAVTVGSAITRIEHICQWF 223
|
| >3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} Length = 180 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 2e-06
Identities = 22/122 (18%), Positives = 45/122 (36%), Gaps = 36/122 (29%)
Query: 211 HGFCGFPVT-ENGKLGEKLLGIVTSRDV-----------------------------DFL 240
G PV +N L +G+V+ D+
Sbjct: 35 KKVTGLPVIDDNWTL----VGVVSDYDLLALDSISGRSQNDTNLFPDVDSTWKTFNELQK 90
Query: 241 ENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIART 300
S + +MT + + +LE+A +L ++K +LP+++ G+LI ++ R
Sbjct: 91 LISKTYGKVVGDLMT--PSPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRG 148
Query: 301 DL 302
++
Sbjct: 149 NV 150
|
| >3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} Length = 180 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 1e-05
Identities = 18/93 (19%), Positives = 38/93 (40%), Gaps = 8/93 (8%)
Query: 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVT-ENGKLGEKLLGIVTSRDV---DFLENSAN 82
++ + PST++ L++ + G PV +N L+G+V+ D+ D + +
Sbjct: 14 QNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNW----TLVGVVSDYDLLALDSISGRSQ 69
Query: 83 MDLKIEKDLSSPLTKKITLAAPLVSSPMDTVTE 115
D + D+ S L + + V +
Sbjct: 70 NDTNLFPDVDSTWKTFNELQKLISKTYGKVVGD 102
|
| >3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A* Length = 245 | Back alignment and structure |
|---|
Score = 47.6 bits (112), Expect = 4e-06
Identities = 38/279 (13%), Positives = 84/279 (30%), Gaps = 56/279 (20%)
Query: 26 IRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDL 85
+ +AP +L + + PV + LLG++++ ++
Sbjct: 14 MDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNN---HLLGMLSTSNIT---------- 60
Query: 86 KIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLL 145
I + L S D A A E + K++
Sbjct: 61 --------ATYMDIWDSNILAKSATSLDNILDTLSAEAQNIN-------EERKVFPGKVV 105
Query: 146 SQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGLRV 205
A + + ++I + I G+ + LI+ V L V
Sbjct: 106 VAA--------------MQAESLKEFISE---GDIAIAGD--RAEIQAELIELKVSLLIV 146
Query: 206 GSHGCHGFCGFPVTENGKLGEKLLGI-VTSRDVDFLENSANMDLKIEKVMTNVNE-IISA 263
G ++ K I V + D S + + + +++
Sbjct: 147 TG-------GHTPSKEIIELAKKNNITVITTPHDSFTASRLIVQSLPVDYVMTKDNLVAV 199
Query: 264 QAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDL 302
+E+ V + +++ P++++ +++ IAR L
Sbjct: 200 STDDLVEDVKVTMSETRYSNYPVIDENNKVVGSIARFHL 238
|
| >2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens} Length = 164 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 1e-05
Identities = 15/101 (14%), Positives = 31/101 (30%), Gaps = 2/101 (1%)
Query: 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD-VDFLENSANMDL 85
+A T L +V+++ +P+ E+ + L+GIV V L+
Sbjct: 21 HSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQ-ILVGIVQRAQLVQALQAEPPSRA 79
Query: 86 KIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCG 126
+ + + P+ + T L
Sbjct: 80 PGHQQCLQDILARGCPTEPVTLTLFSETTLHQAQNLFKLLN 120
|
| >2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens} Length = 164 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 4e-05
Identities = 12/104 (11%), Positives = 38/104 (36%), Gaps = 12/104 (11%)
Query: 211 HGFCGFPVTENGKLGEKLLGIVTSRDV------DFLENSANMDLKIEKVMTNVNEI---- 260
+P+ E+ + L+GIV + + + ++ ++
Sbjct: 42 TDVTEYPLVESTESQ-ILVGIVQRAQLVQALQAEPPSRAPGHQQCLQDILARGCPTEPVT 100
Query: 261 ISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304
++ + +L +A + + L + +G + ++ ++KK
Sbjct: 101 LTLFSETTLHQAQNLFKLLNLQSLFVT-SRGRAVGCVSWVEMKK 143
|
| >2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens} Length = 164 | Back alignment and structure |
|---|
Score = 42.3 bits (99), Expect = 1e-04
Identities = 9/72 (12%), Positives = 20/72 (27%), Gaps = 4/72 (5%)
Query: 3 HHNCTPEYQANEVLKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLG 62
+ + + + TTL + + K VT G
Sbjct: 74 EPPSRAPGHQQCLQDILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTSRG--- 130
Query: 63 EKLLGIVTSRDV 74
+ +G V+ ++
Sbjct: 131 -RAVGCVSWVEM 141
|
| >3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A* Length = 368 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 4e-05
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 426 ASRRGVPVIADGGVQSVGHVMKALALGASTAMMG 459
S ++ GG++S KA+ALGA A M
Sbjct: 263 YSVPDSFLVGSGGIRSGLDAAKAIALGADIAGMA 296
|
| >1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A* Length = 380 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 4e-05
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 430 GVPVIADGGVQSVGHVMKALALGASTAMMG 459
G PV+ D G + ++KALALGA ++G
Sbjct: 278 GKPVLIDSGFRRGSDIVKALALGAEAVLLG 307
|
| >1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A* Length = 332 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 4e-05
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 430 GVPVIADGGVQSVGHVMKALALGASTAMMG 459
+P++A GGV + KALALGA +
Sbjct: 256 HLPLVASGGVYTGTDGAKALALGADLLAVA 285
|
| >1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A* Length = 349 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 7e-05
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 426 ASRRGVPVIADGGVQSVGHVMKALALGASTAMMG 459
+ +IA GG+Q V KA+ALGAS M
Sbjct: 247 SEFPASTMIASGGLQDALDVAKAIALGASCTGMA 280
|
| >1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A* Length = 511 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 7e-05
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 418 AVYRVAEYASRRGV----PVIADGGVQSVGHVMKALALGASTAMMG 459
+ +R + V DGGV+ V+KAL LGA +G
Sbjct: 387 VLAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLG 432
|
| >2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A* Length = 368 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 8e-05
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 431 VPVIADGGVQSVGHVMKALALGASTAMMG 459
VP++ D GV+ HV KALA GA +G
Sbjct: 285 VPIVFDSGVRRGEHVAKALASGADVVALG 313
|
| >1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0 Length = 370 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 8e-05
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 431 VPVIADGGVQSVGHVMKALALGASTAMMG 459
+PV DGGV+ V KALALGA+ +G
Sbjct: 281 IPVFLDGGVRRGTDVFKALALGAAGVFIG 309
|
| >2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A* Length = 392 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 9e-05
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 431 VPVIADGGVQSVGHVMKALALGASTAMMG 459
V V DGGV+ V+KALALGA +G
Sbjct: 308 VEVFLDGGVRKGTDVLKALALGAKAVFVG 336
|
| >3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans} Length = 365 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 1e-04
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 417 TAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMG 459
TA + V ++A GG++ ++KAL LGA +
Sbjct: 265 TAQVLLNAQPLMDKVEILASGGIRHPLDIIKALVLGAKAVGLS 307
|
| >2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A* Length = 185 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 1e-04
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV-DFLENSANMD 84
P + T + V+ + ++ G VT NG +LLGI+T +DV + AN D
Sbjct: 116 LSPFTVTDLTPMEIVVDIFRKLGLRQCLVTHNG----RLLGIITKKDVLKHIAQMANQD 170
|
| >3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A* Length = 352 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 2e-04
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 431 VPVIADGGVQSVGHVMKALALGASTAMMG 459
+ V DGGV++ V+KALALGA +G
Sbjct: 273 IEVYMDGGVRTGTDVLKALALGARCIFLG 301
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 590 | |||
| 4af0_A | 556 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 100.0 | |
| 4fxs_A | 496 | Inosine-5'-monophosphate dehydrogenase; structural | 100.0 | |
| 4avf_A | 490 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 100.0 | |
| 3usb_A | 511 | Inosine-5'-monophosphate dehydrogenase; structural | 100.0 | |
| 1me8_A | 503 | Inosine-5'-monophosphate dehydrogenase; alpha beta | 100.0 | |
| 1jcn_A | 514 | Inosine monophosphate dehydrogenase I; IMPD, IMPDH | 100.0 | |
| 2cu0_A | 486 | Inosine-5'-monophosphate dehydrogenase; structural | 100.0 | |
| 1vrd_A | 494 | Inosine-5'-monophosphate dehydrogenase; TM1347, st | 100.0 | |
| 1zfj_A | 491 | Inosine monophosphate dehydrogenase; IMPDH, CBS do | 100.0 | |
| 3ffs_A | 400 | Inosine-5-monophosphate dehydrogenase; beta-alpha | 100.0 | |
| 4fo4_A | 366 | Inosine 5'-monophosphate dehydrogenase; structural | 100.0 | |
| 3khj_A | 361 | Inosine-5-monophosphate dehydrogenase; enzyme-inhi | 100.0 | |
| 3r2g_A | 361 | Inosine 5'-monophosphate dehydrogenase; structural | 100.0 | |
| 1eep_A | 404 | Inosine 5'-monophosphate dehydrogenase; alpha-beta | 100.0 | |
| 2c6q_A | 351 | GMP reductase 2; TIM barrel, metal-binding, NADP, | 100.0 | |
| 1ypf_A | 336 | GMP reductase; GUAC, purines, pyrimidines, nucleos | 100.0 | |
| 2qr6_A | 393 | IMP dehydrogenase/GMP reductase; NP_599840.1, G re | 99.93 | |
| 4af0_A | 556 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 99.89 | |
| 3kh5_A | 280 | Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a | 99.87 | |
| 2yzq_A | 282 | Putative uncharacterized protein PH1780; sheet/hel | 99.86 | |
| 3ddj_A | 296 | CBS domain-containing protein; structural genomics | 99.86 | |
| 3sr7_A | 365 | Isopentenyl-diphosphate delta-isomerase; isopenten | 99.82 | |
| 3ddj_A | 296 | CBS domain-containing protein; structural genomics | 99.82 | |
| 3usb_A | 511 | Inosine-5'-monophosphate dehydrogenase; structural | 99.8 | |
| 3t4n_C | 323 | Nuclear protein SNF4; CBS domain, nucleotide bindi | 99.79 | |
| 2v8q_E | 330 | 5'-AMP-activated protein kinase subunit gamma-1; p | 99.79 | |
| 3vkj_A | 368 | Isopentenyl-diphosphate delta-isomerase; type 2 is | 99.77 | |
| 2qrd_G | 334 | Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, | 99.77 | |
| 4fxs_A | 496 | Inosine-5'-monophosphate dehydrogenase; structural | 99.76 | |
| 2nli_A | 368 | Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid | 99.75 | |
| 3t4n_C | 323 | Nuclear protein SNF4; CBS domain, nucleotide bindi | 99.75 | |
| 3sgz_A | 352 | Hydroxyacid oxidase 2; flavoprotein, homology, INH | 99.74 | |
| 4avf_A | 490 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 99.72 | |
| 4esy_A | 170 | CBS domain containing membrane protein; structural | 99.7 | |
| 1me8_A | 503 | Inosine-5'-monophosphate dehydrogenase; alpha beta | 99.7 | |
| 1p4c_A | 380 | L(+)-mandelate dehydrogenase; TIM barrel, hydroxy | 99.7 | |
| 2nzl_A | 392 | Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G | 99.69 | |
| 1kbi_A | 511 | Cytochrome B2, L-LCR; flavocytochrome B2, electron | 99.68 | |
| 3l2b_A | 245 | Probable manganase-dependent inorganic pyrophospha | 99.67 | |
| 1gox_A | 370 | (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu | 99.65 | |
| 1vrd_A | 494 | Inosine-5'-monophosphate dehydrogenase; TM1347, st | 99.65 | |
| 1vcf_A | 332 | Isopentenyl-diphosphate delta-isomerase; TIM barre | 99.64 | |
| 1p0k_A | 349 | Isopentenyl-diphosphate delta-isomerase; terpene b | 99.64 | |
| 1vr9_A | 213 | CBS domain protein/ACT domain protein; structural | 99.63 | |
| 1jcn_A | 514 | Inosine monophosphate dehydrogenase I; IMPD, IMPDH | 99.63 | |
| 3nqr_A | 127 | Magnesium and cobalt efflux protein CORC; structur | 99.6 | |
| 3lfr_A | 136 | Putative metal ION transporter; CBS, AMP, PSI, MCS | 99.59 | |
| 3lhh_A | 172 | CBS domain protein; structural genomics, PSI-2, pr | 99.59 | |
| 3i8n_A | 130 | Uncharacterized protein VP2912; APC64273.1, vibrio | 99.59 | |
| 3lv9_A | 148 | Putative transporter; CBS domain, PSI, MCSG, struc | 99.59 | |
| 3k6e_A | 156 | CBS domain protein; streptococcus pneumoniae TIGR4 | 99.58 | |
| 1vr9_A | 213 | CBS domain protein/ACT domain protein; structural | 99.57 | |
| 3jtf_A | 129 | Magnesium and cobalt efflux protein; CBS domain, C | 99.57 | |
| 3oi8_A | 156 | Uncharacterized protein; structural genomics, PSI- | 99.57 | |
| 1ea0_A | 1479 | Glutamate synthase [NADPH] large chain; oxidoreduc | 99.56 | |
| 3gby_A | 128 | Uncharacterized protein CT1051; CBS domain, struct | 99.56 | |
| 2rih_A | 141 | Conserved protein with 2 CBS domains; bateman doma | 99.56 | |
| 3hf7_A | 130 | Uncharacterized CBS-domain protein; CSB-domain PAI | 99.55 | |
| 1zfj_A | 491 | Inosine monophosphate dehydrogenase; IMPDH, CBS do | 99.54 | |
| 2p9m_A | 138 | Hypothetical protein MJ0922; structural genomics, | 99.54 | |
| 2cu0_A | 486 | Inosine-5'-monophosphate dehydrogenase; structural | 99.54 | |
| 3kpb_A | 122 | Uncharacterized protein MJ0100; CBS domain, S-aden | 99.53 | |
| 3oco_A | 153 | Hemolysin-like protein containing CBS domains; str | 99.53 | |
| 3fv6_A | 159 | YQZB protein; CBS domain dimer, metabolism regulat | 99.53 | |
| 3k2v_A | 149 | Putative D-arabinose 5-phosphate isomerase; KPSF-l | 99.53 | |
| 4esy_A | 170 | CBS domain containing membrane protein; structural | 99.53 | |
| 1ofd_A | 1520 | Ferredoxin-dependent glutamate synthase 2; oxidore | 99.53 | |
| 3kxr_A | 205 | Magnesium transporter, putative; cystathionine bet | 99.53 | |
| 4gqw_A | 152 | CBS domain-containing protein CBSX1, chloroplasti; | 99.52 | |
| 2ef7_A | 133 | Hypothetical protein ST2348; CBS-domain, structura | 99.52 | |
| 3lqn_A | 150 | CBS domain protein; csgid, structural genomics, un | 99.5 | |
| 2yzi_A | 138 | Hypothetical protein PH0107; sheet/helix/sheet/she | 99.5 | |
| 1y5h_A | 133 | Hypothetical protein RV2626C; CBS domain, unknown | 99.5 | |
| 1pbj_A | 125 | Hypothetical protein; structural genomics, domain, | 99.49 | |
| 3ocm_A | 173 | Putative membrane protein; structural genomics, PS | 99.49 | |
| 2o16_A | 160 | Acetoin utilization protein ACUB, putative; struct | 99.49 | |
| 3ctu_A | 156 | CBS domain protein; structural genomics, PSI-2, pr | 99.49 | |
| 2uv4_A | 152 | 5'-AMP-activated protein kinase subunit gamma-1; t | 99.49 | |
| 1pvm_A | 184 | Conserved hypothetical protein TA0289; structural | 99.49 | |
| 3sl7_A | 180 | CBS domain-containing protein CBSX2; CBS-PAIR prot | 99.48 | |
| 2emq_A | 157 | Hypothetical conserved protein; CBS domains, NPPSF | 99.47 | |
| 2rc3_A | 135 | CBS domain; in SITU proteolysis, BR, structural ge | 99.47 | |
| 3fhm_A | 165 | Uncharacterized protein ATU1752; CBS domain, proka | 99.45 | |
| 2nyc_A | 144 | Nuclear protein SNF4; bateman2 domain, AMP kinase, | 99.43 | |
| 1o50_A | 157 | CBS domain-containing predicted protein TM0935; CB | 99.43 | |
| 1yav_A | 159 | Hypothetical protein BSU14130; cystathionine beta | 99.43 | |
| 4fry_A | 157 | Putative signal-transduction protein with CBS DOM; | 99.42 | |
| 3kh5_A | 280 | Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a | 99.42 | |
| 2pfi_A | 164 | Chloride channel protein CLC-Ka; cystathionine bet | 99.38 | |
| 2yvy_A | 278 | MGTE, Mg2+ transporter MGTE; membrane protein, tra | 99.36 | |
| 2oux_A | 286 | Magnesium transporter; 10001B, structural genomics | 99.35 | |
| 2j9l_A | 185 | Chloride channel protein 5; ION channel, ION trans | 99.34 | |
| 3k6e_A | 156 | CBS domain protein; streptococcus pneumoniae TIGR4 | 99.33 | |
| 2yzq_A | 282 | Putative uncharacterized protein PH1780; sheet/hel | 99.31 | |
| 2zy9_A | 473 | Mg2+ transporter MGTE; membrane protien, metal tra | 99.29 | |
| 2d4z_A | 250 | Chloride channel protein; CLC chloride channel cyt | 99.29 | |
| 3jtf_A | 129 | Magnesium and cobalt efflux protein; CBS domain, C | 99.28 | |
| 1ep3_A | 311 | Dihydroorotate dehydrogenase B (PYRD subunit); het | 99.28 | |
| 3bo9_A | 326 | Putative nitroalkan dioxygenase; TM0800, structura | 99.27 | |
| 3org_A | 632 | CMCLC; transporter, transport protein; 3.50A {Cyan | 99.26 | |
| 3pc3_A | 527 | CG1753, isoform A; CBS, synthase, PLP, heme, amino | 99.24 | |
| 2e6f_A | 314 | Dihydroorotate dehydrogenase; chagas disease, pyri | 99.23 | |
| 1jub_A | 311 | Dihydroorotate dehydrogenase A; homodimer, alpha-b | 99.23 | |
| 3nqr_A | 127 | Magnesium and cobalt efflux protein CORC; structur | 99.23 | |
| 3kpb_A | 122 | Uncharacterized protein MJ0100; CBS domain, S-aden | 99.22 | |
| 2v8q_E | 330 | 5'-AMP-activated protein kinase subunit gamma-1; p | 99.2 | |
| 3sl7_A | 180 | CBS domain-containing protein CBSX2; CBS-PAIR prot | 99.2 | |
| 3lfr_A | 136 | Putative metal ION transporter; CBS, AMP, PSI, MCS | 99.2 | |
| 3fhm_A | 165 | Uncharacterized protein ATU1752; CBS domain, proka | 99.19 | |
| 3oi8_A | 156 | Uncharacterized protein; structural genomics, PSI- | 99.19 | |
| 2rih_A | 141 | Conserved protein with 2 CBS domains; bateman doma | 99.18 | |
| 3fv6_A | 159 | YQZB protein; CBS domain dimer, metabolism regulat | 99.18 | |
| 3k2v_A | 149 | Putative D-arabinose 5-phosphate isomerase; KPSF-l | 99.18 | |
| 4gqw_A | 152 | CBS domain-containing protein CBSX1, chloroplasti; | 99.17 | |
| 3lv9_A | 148 | Putative transporter; CBS domain, PSI, MCSG, struc | 99.17 | |
| 2qrd_G | 334 | Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, | 99.17 | |
| 3kxr_A | 205 | Magnesium transporter, putative; cystathionine bet | 99.17 | |
| 2p9m_A | 138 | Hypothetical protein MJ0922; structural genomics, | 99.15 | |
| 3gby_A | 128 | Uncharacterized protein CT1051; CBS domain, struct | 99.15 | |
| 2yzi_A | 138 | Hypothetical protein PH0107; sheet/helix/sheet/she | 99.14 | |
| 3q58_A | 229 | N-acetylmannosamine-6-phosphate 2-epimerase; TIM b | 99.14 | |
| 3i8n_A | 130 | Uncharacterized protein VP2912; APC64273.1, vibrio | 99.14 | |
| 2ef7_A | 133 | Hypothetical protein ST2348; CBS-domain, structura | 99.14 | |
| 3hf7_A | 130 | Uncharacterized CBS-domain protein; CSB-domain PAI | 99.14 | |
| 3lqn_A | 150 | CBS domain protein; csgid, structural genomics, un | 99.13 | |
| 3ctu_A | 156 | CBS domain protein; structural genomics, PSI-2, pr | 99.12 | |
| 3lhh_A | 172 | CBS domain protein; structural genomics, PSI-2, pr | 99.12 | |
| 2uva_G | 2060 | Fatty acid synthase beta subunits; fungal, dehydra | 99.12 | |
| 2o16_A | 160 | Acetoin utilization protein ACUB, putative; struct | 99.11 | |
| 1y5h_A | 133 | Hypothetical protein RV2626C; CBS domain, unknown | 99.1 | |
| 3oco_A | 153 | Hemolysin-like protein containing CBS domains; str | 99.09 | |
| 2rc3_A | 135 | CBS domain; in SITU proteolysis, BR, structural ge | 99.09 | |
| 1pvm_A | 184 | Conserved hypothetical protein TA0289; structural | 99.09 | |
| 1pbj_A | 125 | Hypothetical protein; structural genomics, domain, | 99.09 | |
| 2nyc_A | 144 | Nuclear protein SNF4; bateman2 domain, AMP kinase, | 99.08 | |
| 4fry_A | 157 | Putative signal-transduction protein with CBS DOM; | 99.08 | |
| 3igs_A | 232 | N-acetylmannosamine-6-phosphate 2-epimerase 2; ene | 99.08 | |
| 3i65_A | 415 | Dihydroorotate dehydrogenase homolog, mitochondria | 99.08 | |
| 1o50_A | 157 | CBS domain-containing predicted protein TM0935; CB | 99.07 | |
| 2d4z_A | 250 | Chloride channel protein; CLC chloride channel cyt | 99.07 | |
| 3bw2_A | 369 | 2-nitropropane dioxygenase; TIM barrel, oxidoreduc | 99.06 | |
| 2gjl_A | 328 | Hypothetical protein PA1024; 2-nitropropane dioxyg | 99.04 | |
| 2emq_A | 157 | Hypothetical conserved protein; CBS domains, NPPSF | 99.04 | |
| 1tv5_A | 443 | Dhodehase, dihydroorotate dehydrogenase homolog, m | 99.03 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 99.03 | |
| 3ocm_A | 173 | Putative membrane protein; structural genomics, PS | 99.03 | |
| 1yav_A | 159 | Hypothetical protein BSU14130; cystathionine beta | 99.03 | |
| 2pfi_A | 164 | Chloride channel protein CLC-Ka; cystathionine bet | 99.01 | |
| 4ef8_A | 354 | Dihydroorotate dehydrogenase; phenyl isothiocyanat | 99.0 | |
| 2oux_A | 286 | Magnesium transporter; 10001B, structural genomics | 98.99 | |
| 3zwt_A | 367 | Dihydroorotate dehydrogenase (quinone), mitochond; | 98.99 | |
| 2zy9_A | 473 | Mg2+ transporter MGTE; membrane protien, metal tra | 98.98 | |
| 2j9l_A | 185 | Chloride channel protein 5; ION channel, ION trans | 98.98 | |
| 2uv4_A | 152 | 5'-AMP-activated protein kinase subunit gamma-1; t | 98.98 | |
| 1y0e_A | 223 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 98.97 | |
| 2yvy_A | 278 | MGTE, Mg2+ transporter MGTE; membrane protein, tra | 98.97 | |
| 2z6i_A | 332 | Trans-2-enoyl-ACP reductase II; fatty acid synthes | 98.95 | |
| 3org_A | 632 | CMCLC; transporter, transport protein; 3.50A {Cyan | 98.92 | |
| 3oix_A | 345 | Putative dihydroorotate dehydrogenase; dihydrooro | 98.9 | |
| 1f76_A | 336 | Dihydroorotate dehydrogenase; monomer, alpha-beta- | 98.84 | |
| 3lab_A | 217 | Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) | 98.8 | |
| 3pc3_A | 527 | CG1753, isoform A; CBS, synthase, PLP, heme, amino | 98.8 | |
| 1vhn_A | 318 | Putative flavin oxidoreducatase; structural genomi | 98.8 | |
| 1yxy_A | 234 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 98.78 | |
| 3tsm_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 98.74 | |
| 4e38_A | 232 | Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho | 98.73 | |
| 3ghd_A | 70 | A cystathionine beta-synthase domain protein FUSE | 98.7 | |
| 3qja_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 98.66 | |
| 3ghd_A | 70 | A cystathionine beta-synthase domain protein FUSE | 98.64 | |
| 1wa3_A | 205 | 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, | 98.51 | |
| 1wv2_A | 265 | Thiazole moeity, thiazole biosynthesis protein THI | 98.5 | |
| 3l2b_A | 245 | Probable manganase-dependent inorganic pyrophospha | 98.5 | |
| 3b0p_A | 350 | TRNA-dihydrouridine synthase; TIM barrel, oxidored | 98.48 | |
| 2uv8_G | 2051 | Fatty acid synthase subunit beta (FAS1); fatty aci | 98.46 | |
| 1vzw_A | 244 | Phosphoribosyl isomerase A; histidine biosynthesis | 98.44 | |
| 3hgj_A | 349 | Chromate reductase; TIM barrel, oxidoreductase; HE | 98.44 | |
| 2y88_A | 244 | Phosphoribosyl isomerase A; aromatic amino acid bi | 98.42 | |
| 1z41_A | 338 | YQJM, probable NADH-dependent flavin oxidoreductas | 98.4 | |
| 1ka9_F | 252 | Imidazole glycerol phosphtate synthase; riken stru | 98.4 | |
| 1thf_D | 253 | HISF protein; thermophIle, TIM-barrel, histidine b | 98.4 | |
| 3gr7_A | 340 | NADPH dehydrogenase; flavin, FMN, beta-alpha-barre | 98.36 | |
| 1vc4_A | 254 | Indole-3-glycerol phosphate synthase; lyase, trypt | 98.36 | |
| 1wbh_A | 214 | KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} | 98.34 | |
| 1vhc_A | 224 | Putative KHG/KDPG aldolase; structural genomics, u | 98.34 | |
| 1h5y_A | 253 | HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py | 98.32 | |
| 3l5l_A | 363 | Xenobiotic reductase A; TIM barrel, oxidoreductase | 98.31 | |
| 1mzh_A | 225 | Deoxyribose-phosphate aldolase; alpha-beta barrel, | 98.31 | |
| 1qop_A | 268 | Tryptophan synthase alpha chain; lyase, carbon-oxy | 98.3 | |
| 3o07_A | 291 | Pyridoxine biosynthesis protein SNZ1; (beta/alpha) | 98.3 | |
| 3tjx_A | 354 | Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh | 98.28 | |
| 3nav_A | 271 | Tryptophan synthase alpha chain; alpha subunit, st | 98.28 | |
| 1yad_A | 221 | Regulatory protein TENI; TIM barrel, transcription | 98.28 | |
| 3tdn_A | 247 | FLR symmetric alpha-beta TIM barrel; symmetric sup | 98.27 | |
| 2htm_A | 268 | Thiazole biosynthesis protein THIG; thiamin biosyn | 98.27 | |
| 1mxs_A | 225 | KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a | 98.26 | |
| 3vnd_A | 267 | TSA, tryptophan synthase alpha chain; psychrophili | 98.24 | |
| 2w6r_A | 266 | Imidazole glycerol phosphate synthase subunit HISF | 98.24 | |
| 1pii_A | 452 | N-(5'phosphoribosyl)anthranilate isomerase; bifunc | 98.23 | |
| 1i4n_A | 251 | Indole-3-glycerol phosphate synthase; thermostable | 98.22 | |
| 4adt_A | 297 | Pyridoxine biosynthetic enzyme PDX1 homologue, PU; | 98.21 | |
| 1rd5_A | 262 | Tryptophan synthase alpha chain, chloroplast; hydr | 98.21 | |
| 1geq_A | 248 | Tryptophan synthase alpha-subunit; hyperthermophIl | 98.17 | |
| 3fio_A | 70 | A cystathionine beta-synthase domain protein fused | 98.16 | |
| 3fio_A | 70 | A cystathionine beta-synthase domain protein fused | 98.16 | |
| 3f4w_A | 211 | Putative hexulose 6 phosphate synthase; humps, mal | 98.15 | |
| 2ekc_A | 262 | AQ_1548, tryptophan synthase alpha chain; structur | 98.12 | |
| 1vyr_A | 364 | Pentaerythritol tetranitrate reductase; oxidoreduc | 98.08 | |
| 3ngj_A | 239 | Deoxyribose-phosphate aldolase; lyase, structural | 98.06 | |
| 2gou_A | 365 | Oxidoreductase, FMN-binding; OLD yeallow enzyme, f | 98.05 | |
| 2v82_A | 212 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l | 98.04 | |
| 3jr2_A | 218 | Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon | 98.03 | |
| 1jvn_A | 555 | Glutamine, bifunctional histidine biosynthesis pro | 98.02 | |
| 2zbt_A | 297 | Pyridoxal biosynthesis lyase PDXS; pyridoxine bios | 98.02 | |
| 3oa3_A | 288 | Aldolase; structural genomics, seattle structural | 98.01 | |
| 3kru_A | 343 | NADH:flavin oxidoreductase/NADH oxidase; homotetra | 97.99 | |
| 3l5a_A | 419 | NADH/flavin oxidoreductase/NADH oxidase; OLD yello | 97.98 | |
| 2r14_A | 377 | Morphinone reductase; H-tunnelling, flavoprotein, | 97.97 | |
| 2nv1_A | 305 | Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-b | 97.95 | |
| 1xm3_A | 264 | Thiazole biosynthesis protein THIG; structural gen | 97.95 | |
| 3o63_A | 243 | Probable thiamine-phosphate pyrophosphorylase; thi | 97.95 | |
| 4e38_A | 232 | Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho | 97.92 | |
| 1icp_A | 376 | OPR1, 12-oxophytodienoate reductase 1; beta-alpha- | 97.92 | |
| 1qo2_A | 241 | Molecule: N-((5-phosphoribosyl)-formimino)-5-amino | 97.88 | |
| 3gka_A | 361 | N-ethylmaleimide reductase; decode biostructures, | 97.87 | |
| 4ab4_A | 362 | Xenobiotic reductase B; oxidoreductase, OLD yellow | 97.87 | |
| 2fli_A | 220 | Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr | 97.86 | |
| 4a29_A | 258 | Engineered retro-aldol enzyme RA95.0; de novo prot | 97.86 | |
| 1ujp_A | 271 | Tryptophan synthase alpha chain; riken structural | 97.84 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 97.82 | |
| 2hsa_B | 402 | 12-oxophytodienoate reductase 3; alpha beta 8 barr | 97.82 | |
| 2qjg_A | 273 | Putative aldolase MJ0400; beta-alpha barrel, lyase | 97.79 | |
| 2yw3_A | 207 | 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deox | 97.79 | |
| 3zen_D | 3089 | Fatty acid synthase; transferase, mycolic acid bio | 97.77 | |
| 3qja_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 97.76 | |
| 4gj1_A | 243 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 97.73 | |
| 2yw3_A | 207 | 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deox | 97.72 | |
| 1xi3_A | 215 | Thiamine phosphate pyrophosphorylase; structural g | 97.71 | |
| 2tps_A | 227 | Protein (thiamin phosphate synthase); thiamin bios | 97.7 | |
| 3aty_A | 379 | Tcoye, prostaglandin F2A synthase; alpha/beta barr | 97.7 | |
| 3inp_A | 246 | D-ribulose-phosphate 3-epimerase; IDP02542, isomer | 97.66 | |
| 3ovp_A | 228 | Ribulose-phosphate 3-epimerase; iron binding, isom | 97.6 | |
| 3ajx_A | 207 | 3-hexulose-6-phosphate synthase; HPS, OMPDC supraf | 97.57 | |
| 2yzr_A | 330 | Pyridoxal biosynthesis lyase PDXS; redox protein, | 97.56 | |
| 2h6r_A | 219 | Triosephosphate isomerase; beta-alpha barrel; 2.30 | 97.54 | |
| 3ceu_A | 210 | Thiamine phosphate pyrophosphorylase; TIM barrel-l | 97.49 | |
| 2agk_A | 260 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 97.48 | |
| 3lab_A | 217 | Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) | 97.48 | |
| 2f6u_A | 234 | GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate sy | 97.47 | |
| 3tsm_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 97.43 | |
| 1viz_A | 240 | PCRB protein homolog; structural genomics, unknown | 97.42 | |
| 3r12_A | 260 | Deoxyribose-phosphate aldolase; TIM beta/alpha-bar | 97.4 | |
| 1ub3_A | 220 | Aldolase protein; schiff base, deoxyribose phospha | 97.39 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 97.39 | |
| 1vhc_A | 224 | Putative KHG/KDPG aldolase; structural genomics, u | 97.39 | |
| 1tqj_A | 230 | Ribulose-phosphate 3-epimerase; beta-alpha barrel | 97.38 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 97.37 | |
| 1rpx_A | 230 | Protein (ribulose-phosphate 3-epimerase); chloropl | 97.35 | |
| 3tdn_A | 247 | FLR symmetric alpha-beta TIM barrel; symmetric sup | 97.35 | |
| 1wbh_A | 214 | KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} | 97.34 | |
| 3glc_A | 295 | Aldolase LSRF; TIM barrel, lyase, schiff base; HET | 97.27 | |
| 1h1y_A | 228 | D-ribulose-5-phosphate 3-epimerase; oxidative pent | 97.27 | |
| 1mxs_A | 225 | KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a | 97.23 | |
| 3nl6_A | 540 | Thiamine biosynthetic bifunctional enzyme; thiamin | 97.22 | |
| 1w8s_A | 263 | FBP aldolase, fructose-bisphosphate aldolase class | 97.21 | |
| 3ndo_A | 231 | Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid | 97.19 | |
| 3vzx_A | 228 | Heptaprenylglyceryl phosphate synthase; biosynthes | 97.19 | |
| 2v82_A | 212 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l | 97.11 | |
| 1vcv_A | 226 | Probable deoxyribose-phosphate aldolase; DERA, hyp | 97.11 | |
| 3kts_A | 192 | Glycerol uptake operon antiterminator regulatory; | 97.09 | |
| 3w01_A | 235 | Heptaprenylglyceryl phosphate synthase; biosynthes | 97.09 | |
| 2p10_A | 286 | MLL9387 protein; putative phosphonopyruvate hydrol | 97.06 | |
| 1ka9_F | 252 | Imidazole glycerol phosphtate synthase; riken stru | 97.03 | |
| 1vc4_A | 254 | Indole-3-glycerol phosphate synthase; lyase, trypt | 97.02 | |
| 3ctl_A | 231 | D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p | 96.98 | |
| 2z6i_A | 332 | Trans-2-enoyl-ACP reductase II; fatty acid synthes | 96.98 | |
| 3cu2_A | 237 | Ribulose-5-phosphate 3-epimerase; YP_718263.1, rib | 96.96 | |
| 1qap_A | 296 | Quinolinic acid phosphoribosyltransferase; glycosy | 96.94 | |
| 2gjl_A | 328 | Hypothetical protein PA1024; 2-nitropropane dioxyg | 96.9 | |
| 3ffs_A | 400 | Inosine-5-monophosphate dehydrogenase; beta-alpha | 96.88 | |
| 3vk5_A | 286 | MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {S | 96.86 | |
| 1hg3_A | 225 | Triosephosphate isomerase; thermostability, tetram | 96.84 | |
| 1w0m_A | 226 | TIM, triosephosphate isomerase; glycolysis, glucon | 96.83 | |
| 1x1o_A | 286 | Nicotinate-nucleotide pyrophosphorylase; transfera | 96.81 | |
| 2a4a_A | 281 | Deoxyribose-phosphate aldolase; lyase, TIM beta/al | 96.81 | |
| 2w6r_A | 266 | Imidazole glycerol phosphate synthase subunit HISF | 96.8 | |
| 1thf_D | 253 | HISF protein; thermophIle, TIM-barrel, histidine b | 96.8 | |
| 2b7n_A | 273 | Probable nicotinate-nucleotide pyrophosphorylase; | 96.78 | |
| 3exr_A | 221 | RMPD (hexulose-6-phosphate synthase); beta barrel, | 96.77 | |
| 3tjl_A | 407 | NADPH dehydrogenase; OLD yellow enzyme, flavin mon | 96.76 | |
| 3paj_A | 320 | Nicotinate-nucleotide pyrophosphorylase, carboxyl; | 96.73 | |
| 2czd_A | 208 | Orotidine 5'-phosphate decarboxylase; pyrimidine b | 96.69 | |
| 3tha_A | 252 | Tryptophan synthase alpha chain; structural genomi | 96.68 | |
| 1n7k_A | 234 | Deoxyribose-phosphate aldolase; A.pernix, tetramer | 96.63 | |
| 1p1x_A | 260 | Deoxyribose-phosphate aldolase; alpha-beta barrel, | 96.63 | |
| 4a3u_A | 358 | NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET | 96.6 | |
| 1qpo_A | 284 | Quinolinate acid phosphoribosyl transferase; type | 96.59 | |
| 1qo2_A | 241 | Molecule: N-((5-phosphoribosyl)-formimino)-5-amino | 96.57 | |
| 1to3_A | 304 | Putative aldolase YIHT; beta-alpha barrel, structu | 96.55 | |
| 1q6o_A | 216 | Humps, 3-keto-L-gulonate 6-phosphate decarboxylase | 96.53 | |
| 2jbm_A | 299 | Nicotinate-nucleotide pyrophosphorylase; NAD, enzy | 96.52 | |
| 3tqv_A | 287 | Nicotinate-nucleotide pyrophosphorylase; glycosylt | 96.51 | |
| 3c2e_A | 294 | Nicotinate-nucleotide pyrophosphorylase; qprtase, | 96.51 | |
| 1tqx_A | 227 | D-ribulose-5-phosphate 3-epimerase, putative; stru | 96.48 | |
| 1o4u_A | 285 | Type II quinolic acid phosphoribosyltransferase; s | 96.43 | |
| 3gnn_A | 298 | Nicotinate-nucleotide pyrophosphorylase; decode bi | 96.33 | |
| 1h5y_A | 253 | HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py | 96.31 | |
| 3l0g_A | 300 | Nicotinate-nucleotide pyrophosphorylase; ssgcid, N | 96.3 | |
| 3q58_A | 229 | N-acetylmannosamine-6-phosphate 2-epimerase; TIM b | 96.28 | |
| 4a29_A | 258 | Engineered retro-aldol enzyme RA95.0; de novo prot | 96.26 | |
| 3igs_A | 232 | N-acetylmannosamine-6-phosphate 2-epimerase 2; ene | 96.21 | |
| 2y88_A | 244 | Phosphoribosyl isomerase A; aromatic amino acid bi | 96.2 | |
| 1i4n_A | 251 | Indole-3-glycerol phosphate synthase; thermostable | 96.2 | |
| 1vzw_A | 244 | Phosphoribosyl isomerase A; histidine biosynthesis | 96.12 | |
| 4adt_A | 297 | Pyridoxine biosynthetic enzyme PDX1 homologue, PU; | 95.94 | |
| 1ub3_A | 220 | Aldolase protein; schiff base, deoxyribose phospha | 95.79 | |
| 3iv3_A | 332 | Tagatose 1,6-diphosphate aldolase 2; TIM barrel, p | 95.66 | |
| 1pii_A | 452 | N-(5'phosphoribosyl)anthranilate isomerase; bifunc | 95.62 | |
| 3cwo_X | 237 | Beta/alpha-barrel protein based on 1THF and 1TMY; | 95.53 | |
| 1y0e_A | 223 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 95.48 | |
| 3s1x_A | 223 | Probable transaldolase; alpha-beta barrel, conform | 95.46 | |
| 3o07_A | 291 | Pyridoxine biosynthesis protein SNZ1; (beta/alpha) | 95.29 | |
| 3jr2_A | 218 | Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon | 95.09 | |
| 3f4w_A | 211 | Putative hexulose 6 phosphate synthase; humps, mal | 95.0 | |
| 3ajx_A | 207 | 3-hexulose-6-phosphate synthase; HPS, OMPDC supraf | 94.86 | |
| 3r8r_A | 212 | Transaldolase; pentose phosphate pathway, schiff b | 94.86 | |
| 2qr6_A | 393 | IMP dehydrogenase/GMP reductase; NP_599840.1, G re | 94.75 | |
| 3khj_A | 361 | Inosine-5-monophosphate dehydrogenase; enzyme-inhi | 94.72 | |
| 4gj1_A | 243 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 94.67 | |
| 1mdl_A | 359 | Mandelate racemase; isomerase, mandelate pathway, | 94.66 | |
| 2ovl_A | 371 | Putative racemase; structural genomics, PSI-2, pro | 94.56 | |
| 4gbu_A | 400 | NADPH dehydrogenase 1; alpha/beta barrel, enenone | 94.45 | |
| 2tps_A | 227 | Protein (thiamin phosphate synthase); thiamin bios | 94.32 | |
| 1rvk_A | 382 | Isomerase/lactonizing enzyme; enolase superfamily, | 94.22 | |
| 1yxy_A | 234 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 94.22 | |
| 1vkf_A | 188 | Glycerol uptake operon antiterminator-related Pro; | 94.2 | |
| 2pgw_A | 384 | Muconate cycloisomerase; enolase superfamily, octa | 94.19 | |
| 2og9_A | 393 | Mandelate racemase/muconate lactonizing enzyme; NY | 94.17 | |
| 1viz_A | 240 | PCRB protein homolog; structural genomics, unknown | 94.15 | |
| 2zbt_A | 297 | Pyridoxal biosynthesis lyase PDXS; pyridoxine bios | 94.13 | |
| 3ngj_A | 239 | Deoxyribose-phosphate aldolase; lyase, structural | 94.02 | |
| 1wv2_A | 265 | Thiazole moeity, thiazole biosynthesis protein THI | 93.66 | |
| 3vnd_A | 267 | TSA, tryptophan synthase alpha chain; psychrophili | 93.61 | |
| 4eiv_A | 297 | Deoxyribose-phosphate aldolase; chemotherapy, brai | 93.39 | |
| 1xi3_A | 215 | Thiamine phosphate pyrophosphorylase; structural g | 93.38 | |
| 3o63_A | 243 | Probable thiamine-phosphate pyrophosphorylase; thi | 93.29 | |
| 1tqj_A | 230 | Ribulose-phosphate 3-epimerase; beta-alpha barrel | 93.26 | |
| 2nql_A | 388 | AGR_PAT_674P, isomerase/lactonizing enzyme; enolas | 93.19 | |
| 4fo4_A | 366 | Inosine 5'-monophosphate dehydrogenase; structural | 93.15 | |
| 1jvn_A | 555 | Glutamine, bifunctional histidine biosynthesis pro | 93.13 | |
| 1vr6_A | 350 | Phospho-2-dehydro-3-deoxyheptonate aldolase; TM034 | 93.11 | |
| 2rdx_A | 379 | Mandelate racemase/muconate lactonizing enzyme, P; | 93.09 | |
| 1qop_A | 268 | Tryptophan synthase alpha chain; lyase, carbon-oxy | 93.01 | |
| 2oz8_A | 389 | MLL7089 protein; structural genomics, unknown func | 92.98 | |
| 1tzz_A | 392 | Hypothetical protein L1841; structural genomics, m | 92.93 | |
| 1nu5_A | 370 | Chloromuconate cycloisomerase; enzyme, dehalogenat | 92.87 | |
| 1h1y_A | 228 | D-ribulose-5-phosphate 3-epimerase; oxidative pent | 92.75 | |
| 3oa3_A | 288 | Aldolase; structural genomics, seattle structural | 92.62 | |
| 3nvt_A | 385 | 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; | 92.49 | |
| 2pp0_A | 398 | L-talarate/galactarate dehydratase; enolase superf | 92.42 | |
| 3stp_A | 412 | Galactonate dehydratase, putative; PSI biology, st | 92.3 | |
| 2qgy_A | 391 | Enolase from the environmental genome shotgun sequ | 92.27 | |
| 1vli_A | 385 | Spore coat polysaccharide biosynthesis protein SP; | 92.25 | |
| 3iwp_A | 287 | Copper homeostasis protein CUTC homolog; conserved | 92.14 | |
| 2gdq_A | 382 | YITF; mandelate racemase/muconate lactonizing enzy | 92.13 | |
| 2wqp_A | 349 | Polysialic acid capsule biosynthesis protein SIAC; | 91.86 | |
| 2p8b_A | 369 | Mandelate racemase/muconate lactonizing enzyme fam | 91.82 | |
| 3ru6_A | 303 | Orotidine 5'-phosphate decarboxylase; structural g | 91.8 | |
| 3r2g_A | 361 | Inosine 5'-monophosphate dehydrogenase; structural | 91.72 | |
| 3ozy_A | 389 | Putative mandelate racemase; beta-alpha barrel, en | 91.4 | |
| 3rcy_A | 433 | Mandelate racemase/muconate lactonizing enzyme-LI | 91.4 | |
| 1tkk_A | 366 | Similar to chloromuconate cycloisomerase; epimeras | 91.38 | |
| 2qdd_A | 378 | Mandelate racemase/muconate lactonizing enzyme; en | 91.24 | |
| 1tv5_A | 443 | Dhodehase, dihydroorotate dehydrogenase homolog, m | 91.07 | |
| 3tfx_A | 259 | Orotidine 5'-phosphate decarboxylase; PSI-biology, | 91.02 | |
| 3b0p_A | 350 | TRNA-dihydrouridine synthase; TIM barrel, oxidored | 90.86 | |
| 2fli_A | 220 | Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr | 90.85 | |
| 1zco_A | 262 | 2-dehydro-3-deoxyphosphoheptonate aldolase; arabin | 90.84 | |
| 1f76_A | 336 | Dihydroorotate dehydrogenase; monomer, alpha-beta- | 90.77 | |
| 4dwd_A | 393 | Mandelate racemase/muconate lactonizing enzyme, C | 90.76 | |
| 3i65_A | 415 | Dihydroorotate dehydrogenase homolog, mitochondria | 90.56 | |
| 3zwt_A | 367 | Dihydroorotate dehydrogenase (quinone), mitochond; | 90.54 | |
| 3t05_A | 606 | Pyruvate kinase, PK; tetramer, glycolysis, transfe | 90.44 | |
| 3r12_A | 260 | Deoxyribose-phosphate aldolase; TIM beta/alpha-bar | 90.43 | |
| 3ugv_A | 390 | Enolase; enzyme function initiative, EFI, lyase; 2 | 90.36 | |
| 3i4k_A | 383 | Muconate lactonizing enzyme; structural genomics, | 90.24 | |
| 2qde_A | 397 | Mandelate racemase/muconate lactonizing enzyme FA | 90.22 | |
| 1n7k_A | 234 | Deoxyribose-phosphate aldolase; A.pernix, tetramer | 90.19 | |
| 2yyu_A | 246 | Orotidine 5'-phosphate decarboxylase; TIM barrel, | 90.15 | |
| 3gr7_A | 340 | NADPH dehydrogenase; flavin, FMN, beta-alpha-barre | 90.15 | |
| 3m47_A | 228 | Orotidine 5'-phosphate decarboxylase; orotidine 5' | 90.06 | |
| 1rpx_A | 230 | Protein (ribulose-phosphate 3-epimerase); chloropl | 90.03 | |
| 3tj4_A | 372 | Mandelate racemase; enolase, dehydratase, enzyme f | 90.02 | |
| 3dg3_A | 367 | Muconate cycloisomerase; muconate lactonizing enzy | 90.02 | |
| 1eix_A | 245 | Orotidine 5'-monophosphate decarboxylase; alpha-be | 90.0 | |
| 3toy_A | 383 | Mandelate racemase/muconate lactonizing enzyme FA | 89.97 | |
| 1mzh_A | 225 | Deoxyribose-phosphate aldolase; alpha-beta barrel, | 89.82 | |
| 3g8r_A | 350 | Probable spore coat polysaccharide biosynthesis P; | 89.79 | |
| 3ctl_A | 231 | D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p | 89.71 | |
| 1wx0_A | 223 | Transaldolase; structural genomics, riken structur | 89.7 | |
| 1vcv_A | 226 | Probable deoxyribose-phosphate aldolase; DERA, hyp | 89.7 | |
| 3i6e_A | 385 | Muconate cycloisomerase I; structural genomics, NY | 89.61 | |
| 3o1n_A | 276 | 3-dehydroquinate dehydratase; structural genomics, | 89.58 | |
| 2hjp_A | 290 | Phosphonopyruvate hydrolase; phosporus-Ca cleavage | 89.49 | |
| 3jva_A | 354 | Dipeptide epimerase; enolase superfamily, isomeras | 89.43 | |
| 2zad_A | 345 | Muconate cycloisomerase; muconate lactonizing enzy | 89.31 | |
| 4h3d_A | 258 | 3-dehydroquinate dehydratase; structural genomics, | 89.23 | |
| 2hzg_A | 401 | Mandelate racemase/muconate lactonizing enzyme/EN | 89.13 | |
| 3m5v_A | 301 | DHDPS, dihydrodipicolinate synthase; TIM barrel, c | 89.09 | |
| 3noy_A | 366 | 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; | 89.0 | |
| 2yxb_A | 161 | Coenzyme B12-dependent mutase; alpha/beta, structu | 88.99 | |
| 1xky_A | 301 | Dihydrodipicolinate synthase; TIM barrel, , lysine | 88.86 | |
| 4e4u_A | 412 | Mandalate racemase/muconate lactonizing enzyme; ma | 88.85 | |
| 2ehh_A | 294 | DHDPS, dihydrodipicolinate synthase; structural ge | 88.78 | |
| 2b7n_A | 273 | Probable nicotinate-nucleotide pyrophosphorylase; | 88.76 | |
| 1l6w_A | 220 | Fructose-6-phosphate aldolase 1; alpha-beta barrel | 88.72 | |
| 3hqn_D | 499 | Pyruvate kinase, PK; TIM barrel, T-state enzyme, t | 88.63 | |
| 2agk_A | 260 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 88.61 | |
| 3cpr_A | 304 | Dihydrodipicolinate synthetase; (beta/alpha)8-barr | 88.56 | |
| 3go2_A | 409 | Putative L-alanine-DL-glutamate epimerase; structu | 88.41 | |
| 1ypf_A | 336 | GMP reductase; GUAC, purines, pyrimidines, nucleos | 88.41 | |
| 2yxg_A | 289 | DHDPS, dihydrodipicolinate synthase; MJ0244, TIM b | 88.37 | |
| 3b4u_A | 294 | Dihydrodipicolinate synthase; structural genomics, | 88.32 | |
| 1vs1_A | 276 | 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha | 88.29 | |
| 2yci_X | 271 | 5-methyltetrahydrofolate corrinoid/iron sulfur PR | 88.23 | |
| 3l21_A | 304 | DHDPS, dihydrodipicolinate synthase; DAPA, dimer, | 88.19 | |
| 3eoo_A | 298 | Methylisocitrate lyase; seattle structural genomic | 88.11 | |
| 2r8w_A | 332 | AGR_C_1641P; APC7498, dihydrodipicolinate synthase | 88.07 | |
| 4e5t_A | 404 | Mandelate racemase / muconate lactonizing enzyme, | 88.06 | |
| 2o56_A | 407 | Putative mandelate racemase; dehydratase, structur | 88.02 | |
| 1vpx_A | 230 | Protein (transaldolase (EC 2.2.1.2)); TM0295, stru | 88.0 | |
| 3eez_A | 378 | Putative mandelate racemase/muconate lactonizing e | 87.81 | |
| 3my9_A | 377 | Muconate cycloisomerase; structural genomics, PSI- | 87.78 | |
| 3sjn_A | 374 | Mandelate racemase/muconate lactonizing protein; e | 87.76 | |
| 3flu_A | 297 | DHDPS, dihydrodipicolinate synthase; TIM barrel, b | 87.75 | |
| 3dz1_A | 313 | Dihydrodipicolinate synthase; lysine biosynthesis, | 87.72 | |
| 2gl5_A | 410 | Putative dehydratase protein; structural genomics, | 87.71 | |
| 3ih1_A | 305 | Methylisocitrate lyase; alpha-beta structure, TIM- | 87.54 | |
| 3rr1_A | 405 | GALD, putative D-galactonate dehydratase; enolase, | 87.46 | |
| 2vp8_A | 318 | Dihydropteroate synthase 2; RV1207 transferase, fo | 87.4 | |
| 2qq6_A | 410 | Mandelate racemase/muconate lactonizing enzyme- li | 87.35 | |
| 2htm_A | 268 | Thiazole biosynthesis protein THIG; thiamin biosyn | 87.34 | |
| 3sr7_A | 365 | Isopentenyl-diphosphate delta-isomerase; isopenten | 87.32 | |
| 3mqt_A | 394 | Mandelate racemase/muconate lactonizing protein; P | 87.29 | |
| 1a3w_A | 500 | Pyruvate kinase; allosteric regulation, tranferase | 87.24 | |
| 3ndo_A | 231 | Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid | 87.1 | |
| 2ox4_A | 403 | Putative mandelate racemase; enolase, dehydratase, | 87.01 | |
| 3si9_A | 315 | DHDPS, dihydrodipicolinate synthase; structural ge | 86.98 | |
| 2poz_A | 392 | Putative dehydratase; octamer, structural genomics | 86.97 | |
| 2h9a_B | 310 | CO dehydrogenase/acetyl-COA synthase, iron- sulfur | 86.92 | |
| 3fok_A | 307 | Uncharacterized protein CGL0159; CGL0159 ,brevibac | 86.89 | |
| 3tr9_A | 314 | Dihydropteroate synthase; biosynthesis of cofactor | 86.88 | |
| 4dye_A | 398 | Isomerase; enolase family protein, EFI, enzym func | 86.87 | |
| 2hxt_A | 441 | L-fuconate dehydratase; enolase superfamily, D-ery | 86.83 | |
| 1jub_A | 311 | Dihydroorotate dehydrogenase A; homodimer, alpha-b | 86.8 | |
| 1z41_A | 338 | YQJM, probable NADH-dependent flavin oxidoreductas | 86.78 | |
| 1s2w_A | 295 | Phosphoenolpyruvate phosphomutase; phosphonopyruva | 86.73 | |
| 1zlp_A | 318 | PSR132, petal death protein; TIM-barrel, helix swa | 86.69 | |
| 3qze_A | 314 | DHDPS, dihydrodipicolinate synthase; alpha beta ba | 86.6 | |
| 1o5k_A | 306 | DHDPS, dihydrodipicolinate synthase; TM1521, struc | 86.58 | |
| 2vef_A | 314 | Dihydropteroate synthase; antibiotic resistance, t | 86.52 | |
| 2ps2_A | 371 | Putative mandelate racemase/muconate lactonizing e | 86.5 | |
| 3q45_A | 368 | Mandelate racemase/muconate lactonizing enzyme FA | 86.45 | |
| 3p3b_A | 392 | Mandelate racemase/muconate lactonizing protein; e | 86.42 | |
| 2jbm_A | 299 | Nicotinate-nucleotide pyrophosphorylase; NAD, enzy | 86.42 | |
| 3tak_A | 291 | DHDPS, dihydrodipicolinate synthase; TIM barrel, l | 86.41 | |
| 3b4u_A | 294 | Dihydrodipicolinate synthase; structural genomics, | 86.38 | |
| 3mkc_A | 394 | Racemase; metabolic process, PSI2, NYSGXRC, struct | 86.37 | |
| 2ojp_A | 292 | DHDPS, dihydrodipicolinate synthase; dimer, lysine | 86.32 | |
| 3na8_A | 315 | Putative dihydrodipicolinate synthetase; lyase; HE | 86.3 | |
| 2e6f_A | 314 | Dihydroorotate dehydrogenase; chagas disease, pyri | 86.28 | |
| 3sbf_A | 401 | Mandelate racemase / muconate lactonizing enzyme; | 86.26 | |
| 3bw2_A | 369 | 2-nitropropane dioxygenase; TIM barrel, oxidoreduc | 86.2 | |
| 2v9d_A | 343 | YAGE; dihydrodipicolinic acid synthase, N-acetyl n | 86.2 | |
| 2wkj_A | 303 | N-acetylneuraminate lyase; directed evolution, sia | 86.18 | |
| 3vk5_A | 286 | MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {S | 86.16 | |
| 3tji_A | 422 | Mandelate racemase/muconate lactonizing enzyme, N | 86.13 | |
| 1ep3_A | 311 | Dihydroorotate dehydrogenase B (PYRD subunit); het | 85.97 | |
| 3vav_A | 275 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 85.9 | |
| 3bjs_A | 428 | Mandelate racemase/muconate lactonizing enzyme; en | 85.81 | |
| 1xg4_A | 295 | Probable methylisocitrate lyase; 2-methylisocitrat | 85.66 | |
| 3s5o_A | 307 | 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; | 85.66 | |
| 3fs2_A | 298 | 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, | 85.58 | |
| 1qpo_A | 284 | Quinolinate acid phosphoribosyl transferase; type | 85.5 | |
| 1nsj_A | 205 | PRAI, phosphoribosyl anthranilate isomerase; therm | 85.49 | |
| 1p0k_A | 349 | Isopentenyl-diphosphate delta-isomerase; terpene b | 85.47 | |
| 2rfg_A | 297 | Dihydrodipicolinate synthase; beta barrel, amino-a | 85.41 | |
| 3hgj_A | 349 | Chromate reductase; TIM barrel, oxidoreductase; HE | 85.39 | |
| 2qiw_A | 255 | PEP phosphonomutase; structural genomics, joint ce | 85.35 | |
| 3fkr_A | 309 | L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL f | 85.32 | |
| 4dbe_A | 222 | Orotidine 5'-phosphate decarboxylase; TIM barrel, | 85.26 | |
| 1vcf_A | 332 | Isopentenyl-diphosphate delta-isomerase; TIM barre | 85.25 | |
| 3b8i_A | 287 | PA4872 oxaloacetate decarboxylase; alpha/beta barr | 85.03 | |
| 3bo9_A | 326 | Putative nitroalkan dioxygenase; TM0800, structura | 85.02 | |
| 3ve9_A | 215 | Orotidine-5'-phosphate decarboxylase; TIM barrel f | 85.0 | |
| 2vc6_A | 292 | MOSA, dihydrodipicolinate synthase; DHDPS, TIM bar | 84.93 | |
| 1dbt_A | 239 | Orotidine 5'-phosphate decarboxylase; UMP, TIM bar | 84.92 | |
| 3daq_A | 292 | DHDPS, dihydrodipicolinate synthase; lysine biosyn | 84.88 | |
| 1o4u_A | 285 | Type II quinolic acid phosphoribosyltransferase; s | 84.88 | |
| 3ddm_A | 392 | Putative mandelate racemase/muconate lactonizing e | 84.83 | |
| 1chr_A | 370 | Chloromuconate cycloisomerase; 3.00A {Ralstonia eu | 84.8 |
| >4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-101 Score=813.04 Aligned_cols=477 Identities=50% Similarity=0.787 Sum_probs=330.5
Q ss_pred EEEeccccccccCCCCCCC-CccCCcccccccccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHH
Q psy1056 67 GIVTSRDVDFLENSANMDL-KIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLL 145 (590)
Q Consensus 67 GivT~~Did~l~~~~~~~~-~~~~~~~~~l~~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l 145 (590)
+-+||+ |+++.|+++++ |+++++++++++++.+++|+++++||||++..|+++|++.||+||||+|++
T Consensus 58 ~GLTfD--DVlLvP~~s~v~p~~Vdl~t~lt~~i~L~iPlvSA~MDTVTe~~MAIamAr~GGiGvIH~n~s--------- 126 (556)
T 4af0_A 58 GGLTYN--DFLVLPGHINFPASDVSLQSKATKNIVLNTPFLSSPMDTVTEDRMAIALALHGGLGIIHHNCS--------- 126 (556)
T ss_dssp CSCCGG--GEEECCCCCCSCGGGCCCCEEEETTEEESSCEEECCCTTTCSHHHHHHHHHTTCEEEECCSSC---------
T ss_pred CCCChh--hEEEccCCCCCCcccceeeeeccCCcEeCCCEEecCcccccCHHHHHHHHHCCCeEEEcCCCC---------
Confidence 459999 99999999999 889999999999999999999999999999999999999999999999998
Q ss_pred HHcCCcEEEEcCCCCchHHHHHHHHHhhhcCCCcccccccccc--hHHHHHHHHHhccccccccccccCceeeEEeeCCC
Q psy1056 146 SQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVT--TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGK 223 (590)
Q Consensus 146 ~~~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~im~~~~~~--~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~ 223 (590)
.+.|.++++++|+ +... ++.+|++. +.|+.++.++| .+++++.+||++++.
T Consensus 127 ----------------ie~Qa~~V~~VKr-~e~g-~i~dPvtl~P~~Tv~da~~l~---------~~~~isgvpVvd~g~ 179 (556)
T 4af0_A 127 ----------------AEEQAAMVRRVKK-YENG-FITDPLCLGPDATVGDVLEIK---------AKFGFCGVPITETGE 179 (556)
T ss_dssp ----------------HHHHHHHHHHHHH-CCC-----------------------------------------------
T ss_pred ----------------HHHHHHHHHHHHh-cccC-ccCCCeEcCCCCCHHHHHHHH---------HHhCCCccccccccC
Confidence 9999999999998 7776 77777777 99999999999 999999999999866
Q ss_pred CCCeEEEEEecchhhccccccccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccc
Q psy1056 224 LGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLK 303 (590)
Q Consensus 224 ~~~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll 303 (590)
.+++|+||||.+|++|.. .+.+|+++|++ +++|++++.++++|.++|.++++..|||||++|+|+|+||++|++
T Consensus 180 ~~~kLvGIvT~RD~rf~d----~~~~V~evMT~--~lvt~~~~~~leeA~~iL~~~kieklpVVd~~g~LvGlIT~kDi~ 253 (556)
T 4af0_A 180 PDSKLLGIVTGRDVQFQD----AETPIKSVMTT--EVVTGSSPITLEKANSLLRETKKGKLPIVDSNGHLVSLVARSDLL 253 (556)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCEEEEEEecccccccc----cceEhhhhccc--ceEEecCCCCHHHHHHHHHHccccceeEEccCCcEEEEEEechhh
Confidence 668999999999999842 35899999999 999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCc-ccCCceEEeEeeccchhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCc
Q psy1056 304 KSRDYPDSSK-DENNQLIVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFG 382 (590)
Q Consensus 304 ~~~~~~~~~~-d~~~~l~v~a~i~~~~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~ 382 (590)
+...|+++.+ |..++++++++++...+..+++..|+++|+|+++||+++|+..++++.++++++.+|+++||+|||.|+
T Consensus 254 k~~~~p~A~k~d~~grL~VgAAVgv~~d~~eR~~aLv~AGvD~iviD~ahGhs~~v~~~i~~ik~~~p~~~viaGNVaT~ 333 (556)
T 4af0_A 254 KNQNYPYASKVPESKQLYCGAAIGTRPGDKDRLKLLAEAGLDVVVLDSSQGNSVYQIEFIKWIKQTYPKIDVIAGNVVTR 333 (556)
T ss_dssp ----CTTCCBCTTTCCBCCEEEECSSHHHHHHHHHHHHTTCCEEEECCSCCCSHHHHHHHHHHHHHCTTSEEEEEEECSH
T ss_pred hhhhCCcchhcchhhceeeEEEeccCccHHHHHHHHHhcCCcEEEEeccccccHHHHHHHHHHHhhCCcceEEeccccCH
Confidence 9999999876 788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCCEEEE-----cccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEE
Q psy1056 383 YQPRATLLNFIYQIEM-----IKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTA 456 (590)
Q Consensus 383 ~~a~~l~~~Gvd~i~v-----~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v 456 (590)
+.|+.|+++|||+|+| ++|+||. .+|.|+ |++++.+|++++.+.++||||||||++++||+||||+|||+|
T Consensus 334 e~a~~Li~aGAD~vkVGiGpGSiCtTr~---v~GvG~PQ~tAi~~~a~~a~~~~vpvIADGGI~~sGDi~KAlaaGAd~V 410 (556)
T 4af0_A 334 EQAAQLIAAGADGLRIGMGSGSICITQE---VMAVGRPQGTAVYAVAEFASRFGIPCIADGGIGNIGHIAKALALGASAV 410 (556)
T ss_dssp HHHHHHHHHTCSEEEECSSCSTTBCCTT---TCCSCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHcCCCEEeecCCCCccccccc---ccCCCCcHHHHHHHHHHHHHHcCCCEEecCCcCcchHHHHHhhcCCCEE
Confidence 9999999999999999 9999999 999999 999999999999999999999999999999999999999999
Q ss_pred EECccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccC-----------CCcccchhhhccccceeecccceeEEee
Q psy1056 457 MMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDG-----------GAAAMDRYFHNEMDKLKVAQGVSGAIVD 525 (590)
Q Consensus 457 ~~g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~-----------~~~~~~~~~~~~~~~~~~~eg~~~~~~~ 525 (590)
|+|++|++|+||||++++.+|++||.||||||.+||.+... ..+++.+|||++..+.++|||+|+.|||
T Consensus 411 MlGsllAGt~EsPGe~~~~~G~~~K~YrGMgS~~Am~~~~~~~~~~~~~~~~~~~~s~dRyfq~~~~~~v~EGveg~Vpy 490 (556)
T 4af0_A 411 MMGGLLAGTTESPGEYFYHEGKRVKVYRGMGSIEAMEHTQRGSASGKRSILGLDNAATARYFSEADAVKVAQGVSGDVAD 490 (556)
T ss_dssp EESTTTTTBTTSSSCCEEETTEEEEEEECTTSHHHHTTC------------CCSCSSEEECCCBSSSSCBCCBCEEEEEC
T ss_pred EEchhhccccCCCCcEEEECCEEEEeecccccHHHHHhcccCCcccccccccccccchhhhcccccccccCCccEEeccC
Confidence 99999999999999999999999999999999999975321 1246788999998888999999999999
Q ss_pred CCchhchHHHHHhhhhhhCcccCcCcHHHHHHhhccCceEEEEEecCccccCCCCcccccccccC
Q psy1056 526 KGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRAMMYSGELKFEKRTLCAQNEGSVHGLYSYEKRLF 590 (590)
Q Consensus 526 ~~~~~~~~~~~~~~l~~~m~~~G~~~i~~l~~~~~~~~~~~~~~~~~~~~e~~~h~~~~~~~~~~ 590 (590)
||+|.++|++|.++||++|+|+||+||+|||++.++|+++|+++|++|++|||||||+||+||||
T Consensus 491 kG~v~~~i~~l~gGlrs~m~y~Ga~~i~el~~~a~~g~~rf~~iT~ag~~Es~~Hdv~s~~K~l~ 555 (556)
T 4af0_A 491 KGSINKFVPYLFTGLQHSLQDAAIKSVSELHSCARSGSLRFELRTASAQLEGGVHGLNSYTKRLF 555 (556)
T ss_dssp CBCHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHTCSCEEECCCC------------------
T ss_pred CCcHHHHHHHHHHHHHHhhhccCCCcHHHHHHhhhccCceEEEEChhhhhhcCCCccceeeeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999998
|
| >4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-81 Score=679.07 Aligned_cols=457 Identities=33% Similarity=0.503 Sum_probs=411.7
Q ss_pred EeccccccccCCCCCCC-CccCCcccccccccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHH
Q psy1056 69 VTSRDVDFLENSANMDL-KIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQ 147 (590)
Q Consensus 69 vT~~Did~l~~~~~~~~-~~~~~~~~~l~~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~ 147 (590)
+|++ |+++.|+++++ |+++++++++++.+.++.|+++++|++++++.|++++++.||+|++|+|.+
T Consensus 11 ~t~~--d~~~~p~~~~~~~~~~~~~t~lt~~i~l~iPivsa~MdtVTe~~ma~a~a~~GGiGvI~~n~s----------- 77 (496)
T 4fxs_A 11 LTFD--DVLLVPAHSTVLPNTADLRTRLTKNIALNIPMVSASMDTVTEARLAIALAQEGGIGFIHKNMS----------- 77 (496)
T ss_dssp CCGG--GEEECCCCCCCCGGGCBCCEEEETTEEESSSEEECCCTTTCSHHHHHHHHHHTCEEEECSSSC-----------
T ss_pred cCcc--cEEEecCccccccccccccceeccccccCCCceecCcchhhHHHHHHHHHHcCCcceecCCCC-----------
Confidence 7999 99999999999 889999999999999999999999999999999999999999999999987
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHhhhcCCCcccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCC
Q psy1056 148 AGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKL 224 (590)
Q Consensus 148 ~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~ 224 (590)
.+.+.+++++++. +.. +|..++.+ ++++.++++.| .+++++++||+|+
T Consensus 78 --------------~e~qa~~V~~Vk~-~~~--~m~~d~v~v~~~~tv~ea~~~m---------~~~~~s~~PVvd~--- 128 (496)
T 4fxs_A 78 --------------IEQQAAQVHQVKI-FEA--GVVTHPVTVRPEQTIADVMELT---------HYHGFAGFPVVTE--- 128 (496)
T ss_dssp --------------HHHHHHHHHHHHH-CCC----CBCCCCBCSSSBHHHHHHHH---------TSSCCCEEEEECS---
T ss_pred --------------HHHHHHHHHhccc-ccc--ccccCceEECCCCCHHHHHHHH---------HHcCCcEEEEEcc---
Confidence 7777888888876 443 56555555 99999999999 9999999999998
Q ss_pred CCeEEEEEecchhhccccccccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 225 GEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 225 ~~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
+++++||||.+|+++... ...+++++|++.++++++++++++.+++++|.+++++.+||+|++|+++|+||.+|+++
T Consensus 129 ~~~lvGiVt~rDL~~~~~---~~~~v~diM~p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~G~l~GiIT~~DIl~ 205 (496)
T 4fxs_A 129 NNELVGIITGRDVRFVTD---LTKSVAAVMTPKERLATVKEGATGAEVQEKMHKARVEKILVVNDEFQLKGMITAKDFHK 205 (496)
T ss_dssp SSBEEEEEEHHHHTTCCC---TTSBGGGTSEEGGGCCEEECC----CGGGTCC---CCCEEEECTTSBCCEEECCC----
T ss_pred CCEEEEEEEHHHHhhccc---CCCcHHHHhcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEeehHhHHHH
Confidence 699999999999986543 35889999993234899999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCcccCCceEEeEeeccchhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHH
Q psy1056 305 SRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQ 384 (590)
Q Consensus 305 ~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~ 384 (590)
...++...++..+++++++.++...+..+.++.++++|+++++++.++|+...+.+.++++++.+|++|+++|++.+.+.
T Consensus 206 ~~~~p~a~~d~~grL~v~aavG~~~d~~~~a~~l~~aG~d~I~id~a~g~~~~~~~~i~~ir~~~p~~~Vi~g~v~t~e~ 285 (496)
T 4fxs_A 206 AESKPNACKDEQGRLRVGAAVGAAPGNEERVKALVEAGVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEG 285 (496)
T ss_dssp -CCCTTCCBCTTSCBCCEEECCSSSCCHHHHHHHHHTTCSEEEEECSCTTSHHHHHHHHHHHHHCTTCCEEEEEECSHHH
T ss_pred hhcccchhhhcccceeeeeeeccccchHHHHHHHHhccCceEEeccccccchHHHHHHHHHHHHCCCceEEEcccCcHHH
Confidence 99999988889999999999999888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCEEEE-----cccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEE
Q psy1056 385 PRATLLNFIYQIEM-----IKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMM 458 (590)
Q Consensus 385 a~~l~~~Gvd~i~v-----~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~ 458 (590)
|+.|.++|||+|.| +.|+++. .++||. +.+++.++.++++..++|||++|||+++.|++||+++|||+||+
T Consensus 286 a~~l~~aGaD~I~Vg~g~Gs~~~tr~---~~g~g~p~~~~i~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GAd~V~i 362 (496)
T 4fxs_A 286 ARALIEAGVSAVKVGIGPGSICTTRI---VTGVGVPQITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMV 362 (496)
T ss_dssp HHHHHHHTCSEEEECSSCCTTBCHHH---HHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHhCCCEEEECCCCCcCccccc---ccCCCccHHHHHHHHHHHhccCCCeEEEeCCCCCHHHHHHHHHcCCCeEEe
Confidence 99999999999998 4788888 889998 99999999988877789999999999999999999999999999
Q ss_pred CccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccc--cceeecccceeEEeeCCchhchHHHH
Q psy1056 459 GSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEM--DKLKVAQGVSGAIVDKGSVLRFLPYL 536 (590)
Q Consensus 459 g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~--~~~~~~eg~~~~~~~~~~~~~~~~~~ 536 (590)
|++|++|+||||++++++|++||.||||||++||.+ |+.+|||++. .+.++|||+++.|||||++.++|++|
T Consensus 363 Gs~f~~t~Espg~~~~~~g~~~k~~~gm~s~~a~~~------~~~~r~~~~~~~~~~~~~eg~~~~v~~~g~~~~~~~~~ 436 (496)
T 4fxs_A 363 GSMFAGTEEAPGEVILYQGRSYKAYRGMGSLGAMSK------GSSDRYFQTDNAADKLVPEGIEGRIAYKGHLKEIIHQQ 436 (496)
T ss_dssp STTTTTBTTSSSCCEESSSCEEEEEECTTSHHHHHS------SSCCSTTTC---CCCCCCSBCEEEEECCBCHHHHHHHH
T ss_pred cHHHhcCCCCCcceeeeCCeEeeeecccchHHHHhc------cccccccccccccccccCCccEEeCCCCCCHHHHHHHH
Confidence 999999999999999999999999999999999974 7889999864 35789999999999999999999999
Q ss_pred HhhhhhhCcccCcCcHHHHHHhhccCceEEEEEecCccccCCCCcccc
Q psy1056 537 QCGLKHGCQDIGAKSLSNLRAMMYSGELKFEKRTLCAQNEGSVHGLYS 584 (590)
Q Consensus 537 ~~~l~~~m~~~G~~~i~~l~~~~~~~~~~~~~~~~~~~~e~~~h~~~~ 584 (590)
.++||++|+|+||+||+|||++ ++|+++|++|++||||||+..
T Consensus 437 ~~~l~~~~~~~g~~~i~~l~~~-----~~~~~~~~~~~~e~~~h~~~~ 479 (496)
T 4fxs_A 437 MGGLRSCMGLTGSATVEDLRTK-----AQFVRISGAGMKESHVHDVQI 479 (496)
T ss_dssp HHHHHHHHHHHTCSBHHHHHHH-----CCEEECCHHHHHHHSCCSSCC
T ss_pred HHHHHHHHHhcCcCcHHHHHhC-----CeEEEEccchhhccCCCcccc
Confidence 9999999999999999999998 899999999999999999873
|
| >4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-79 Score=667.22 Aligned_cols=458 Identities=34% Similarity=0.488 Sum_probs=282.9
Q ss_pred EeccccccccCCCCCCC-CccCCcccccccccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHH
Q psy1056 69 VTSRDVDFLENSANMDL-KIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQ 147 (590)
Q Consensus 69 vT~~Did~l~~~~~~~~-~~~~~~~~~l~~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~ 147 (590)
+||+ |+++.|+++++ |+++++++++++.+.++.|+++++|+++++..|++++++.||+|++|++.+
T Consensus 10 ~t~~--d~~~~p~~~~~~~~~~~~~t~lt~~i~l~iPivsa~M~tVTe~~lA~ala~~GGiGvI~~~~~----------- 76 (490)
T 4avf_A 10 LTFD--DVLLIPGYSEVLPKDVSLKTRLTRGIELNIPLVSAAMDTVTEARLAIAMAQEGGIGIIHKNMG----------- 76 (490)
T ss_dssp CCGG--GEEECCCCBCSCGGGSCCCEEEETTEEESSSEEECSCTTTCSHHHHHHHHHHTSEEEECCSSC-----------
T ss_pred CCcc--eEEEeCCCCcccccceeeecccccCcccCCCccccchhhhCHHHHHHHHHHcCCCccccCCCC-----------
Confidence 7999 99999999999 889999999999999999999999999999999999999999999999887
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHhhhcCCCcccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCC
Q psy1056 148 AGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKL 224 (590)
Q Consensus 148 ~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~ 224 (590)
.+.+.+++++++. +.. +|..++.+ ++++.++++.| .+++++++||+|+
T Consensus 77 --------------~e~~a~~v~~vk~-~~~--~m~~~~v~v~~~~tv~ea~~~m---------~~~~~s~~pVvd~--- 127 (490)
T 4avf_A 77 --------------IEQQAAEVRKVKK-HET--AIVRDPVTVTPSTKIIELLQMA---------REYGFSGFPVVEQ--- 127 (490)
T ss_dssp --------------HHHHHHHHHHHHH-CCC-------------------------------------------------
T ss_pred --------------HHHHHHHhhhhcc-ccc--CcccCceEeCCCCcHHHHHHHH---------HHhCCCEEEEEEC---
Confidence 6677777777776 443 56555544 99999999999 9999999999995
Q ss_pred CCeEEEEEecchhhccccccccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 225 GEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 225 ~~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
++++||||.+|+++... ...+|+++|+++.+++++++++++.+++++|.+++++.+||+|++|+++|+||.+|+++
T Consensus 128 -g~lvGIVt~rDl~~~~~---~~~~V~~vMtp~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~ 203 (490)
T 4avf_A 128 -GELVGIVTGRDLRVKPN---AGDTVAAIMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDENFYLRGLVTFRDIEK 203 (490)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -CEEEEEEEhHHhhhccc---cCCcHHHHhccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHhhh
Confidence 89999999999986543 35889999994235899999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCcccCCceEEeEeeccchhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHH
Q psy1056 305 SRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQ 384 (590)
Q Consensus 305 ~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~ 384 (590)
...++...++..+++++++.++...+..+.++.++++|+++++++.++|+...+.+.++++++.+|++|+++|++.+.+.
T Consensus 204 ~~~~p~a~kd~~grl~v~aavG~~~~~~~~a~~l~~aG~d~I~id~a~g~~~~~~~~v~~i~~~~p~~~Vi~g~v~t~e~ 283 (490)
T 4avf_A 204 AKTYPLASKDEQGRLRVGAAVGTGADTGERVAALVAAGVDVVVVDTAHGHSKGVIERVRWVKQTFPDVQVIGGNIATAEA 283 (490)
T ss_dssp ---CTTCCBCTTSCBCCEEEECSSTTHHHHHHHHHHTTCSEEEEECSCCSBHHHHHHHHHHHHHCTTSEEEEEEECSHHH
T ss_pred hccCcchhhhccCcceeeeeeccccchHHHHHHHhhcccceEEecccCCcchhHHHHHHHHHHHCCCceEEEeeeCcHHH
Confidence 99999998899999999999999888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCEEEE-----cccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEE
Q psy1056 385 PRATLLNFIYQIEM-----IKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMM 458 (590)
Q Consensus 385 a~~l~~~Gvd~i~v-----~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~ 458 (590)
|+.|.++|||+|.| ++|+++. ..+||. +.+++.++.++++..++|||++|||+++.|++|||++|||+||+
T Consensus 284 a~~l~~aGaD~I~vg~g~Gs~~~t~~---~~g~g~p~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kal~~GAd~V~v 360 (490)
T 4avf_A 284 AKALAEAGADAVKVGIGPGSICTTRI---VAGVGVPQISAIANVAAALEGTGVPLIADGGIRFSGDLAKAMVAGAYCVMM 360 (490)
T ss_dssp HHHHHHTTCSEEEECSSCSTTCHHHH---HTCBCCCHHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHcCCCEEEECCCCCcCCCccc---cCCCCccHHHHHHHHHHHhccCCCcEEEeCCCCCHHHHHHHHHcCCCeeee
Confidence 99999999999998 5788887 888999 99999999988877789999999999999999999999999999
Q ss_pred CccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhcccc---ceeecccceeEEeeCCchhchHHH
Q psy1056 459 GSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMD---KLKVAQGVSGAIVDKGSVLRFLPY 535 (590)
Q Consensus 459 g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~---~~~~~eg~~~~~~~~~~~~~~~~~ 535 (590)
|++|++++|||+++++++|++||.||||||++||.+ .+|+.+|||++.. +++++||+++.|||||++.++|++
T Consensus 361 Gs~~~~~~Esp~~~~~~~g~~~k~~~gm~s~~a~~~----~~~~~~r~~~~~~~~~~~~~~eg~~~~v~~~g~~~~~~~~ 436 (490)
T 4avf_A 361 GSMFAGTEEAPGEIELFQGRSYKSYRGMGSLGAMSG----SQGSSDRYFQDASAGAEKLVPEGIEGRVPYKGALSAIVHQ 436 (490)
T ss_dssp CTTTTTBTTSSSCEEEETTEEEEC-------------------------------------------CBCCBCHHHHHHH
T ss_pred cHHHhcCCCCCCceEeECCeEeeeecCcccHHHHhh----cccccchhhcccccccccccCCCcEEcCCcCCCHHHHHHH
Confidence 999999999999999999999999999999999953 1578999998653 478999999999999999999999
Q ss_pred HHhhhhhhCcccCcCcHHHHHHhhccCceEEEEEecCccccCCCCcccc
Q psy1056 536 LQCGLKHGCQDIGAKSLSNLRAMMYSGELKFEKRTLCAQNEGSVHGLYS 584 (590)
Q Consensus 536 ~~~~l~~~m~~~G~~~i~~l~~~~~~~~~~~~~~~~~~~~e~~~h~~~~ 584 (590)
|.++||++|+|+||+||+|||++ ++|+++|++|++||||||+..
T Consensus 437 ~~~~lr~~~~~~g~~~i~~l~~~-----~~~~~~~~~~~~e~~~h~~~~ 480 (490)
T 4avf_A 437 LMGGLRAAMGYTGSADIQQMRTQ-----PQFVRITGAGMAESHVHDVQI 480 (490)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHS-----CCEEEECCC------------
T ss_pred HHHHHHHHHHhcCcCcHHHHHhC-----CEEEEEccchhhcCCCCcccc
Confidence 99999999999999999999998 899999999999999999873
|
| >3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-77 Score=651.46 Aligned_cols=458 Identities=34% Similarity=0.505 Sum_probs=385.4
Q ss_pred EeccccccccCCCCCCC-CccCCcccccccccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHH
Q psy1056 69 VTSRDVDFLENSANMDL-KIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQ 147 (590)
Q Consensus 69 vT~~Did~l~~~~~~~~-~~~~~~~~~l~~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~ 147 (590)
+|++ |+++.|+++++ |+++++++++++.+.++.|+++++|+++++..|++++++.||+|++|++.+
T Consensus 35 ~t~~--d~~~~p~~~~~~~~~~~~~t~lt~~i~l~iPivsa~MdtvTe~~lAia~a~~GgiGvIh~~~~----------- 101 (511)
T 3usb_A 35 LTFD--DVLLVPAKSDVLPREVSVKTVLSESLQLNIPLISAGMDTVTEADMAIAMARQGGLGIIHKNMS----------- 101 (511)
T ss_dssp CCGG--GEEECCCCCCCCTTTSBCCEEEETTEEESSSEEECSCTTTCSHHHHHHHHHHTCEEEECSSSC-----------
T ss_pred cceE--EEEEECCcccccccceEeeeEeecccccCCCccccCchhhcHHHHHHHHHhcCCceeecccCC-----------
Confidence 8999 99999999998 889999999999999999999999999999999999999999999999887
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHhhhcCCCcccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCC
Q psy1056 148 AGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKL 224 (590)
Q Consensus 148 ~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~ 224 (590)
.+.+.+++++++. ... +|..++.+ ++++.++++.| .+++++++||+|++ .
T Consensus 102 --------------~~~q~~~V~~V~~-~~~--~m~~d~v~l~~~~tv~ea~~~m---------~~~~~s~~pVvd~g-~ 154 (511)
T 3usb_A 102 --------------IEQQAEQVDKVKR-SES--GVISDPFFLTPEHQVYDAEHLM---------GKYRISGVPVVNNL-D 154 (511)
T ss_dssp --------------HHHHHHHHHHHHT-SSS--CSSSSCCCBCTTSBHHHHHHHH---------HHHCCSEEEEESCT-T
T ss_pred --------------HHHHHHHHHHhhc-ccc--ccccCCEEECCCCCHHHHHHHH---------HHcCCcEEEEEecC-C
Confidence 6677777888876 433 45444444 99999999999 99999999999851 1
Q ss_pred CCeEEEEEecchhhccccccccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 225 GEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 225 ~~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
+++++|+||.+|+++... ...+|+++|++ .+++++++++++.+++++|.+++++.+||+|++|+++|+||.+|+++
T Consensus 155 ~~~lvGiVt~rDl~~~~~---~~~~V~~vM~~-~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe~g~l~GiIT~~Dil~ 230 (511)
T 3usb_A 155 ERKLVGIITNRDMRFIQD---YSIKISDVMTK-EQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDIEK 230 (511)
T ss_dssp TCBEEEEEEHHHHTTCCC---SSSBHHHHCCC-CCCCCEETTCCHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHH
T ss_pred CCEEEEEEEehHhhhhcc---CCCcHHHhccc-CCCEEECCCCCHHHHHHHHHHcCCCEEEEEeCCCCEeeeccHHHHHH
Confidence 389999999999987432 45899999995 47899999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCcccCCceEEeEeeccchhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHH
Q psy1056 305 SRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQ 384 (590)
Q Consensus 305 ~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~ 384 (590)
...++...++..+++++++.++...+..+++..++++|+++++++.++|+..++++.++++++.+|++|+++|+|.+.+.
T Consensus 231 ~~~~p~a~~D~~~rl~V~aavg~~~d~~era~aLveaGvd~I~Id~a~g~~~~v~~~i~~i~~~~~~~~vi~g~v~t~e~ 310 (511)
T 3usb_A 231 VIEFPNSAKDKQGRLLVGAAVGVTADAMTRIDALVKASVDAIVLDTAHGHSQGVIDKVKEVRAKYPSLNIIAGNVATAEA 310 (511)
T ss_dssp HHHCTTCCBCTTSCBCCEEEECSSTTHHHHHHHHHHTTCSEEEEECSCTTSHHHHHHHHHHHHHCTTSEEEEEEECSHHH
T ss_pred hhhcccchhhhccceeeeeeeeeccchHHHHHHHHhhccceEEecccccchhhhhhHHHHHHHhCCCceEEeeeeccHHH
Confidence 99998888888899999999998888899999999999999999999999999999999999999889999999999999
Q ss_pred HHHHHHCCCCEEEE-----cccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEE
Q psy1056 385 PRATLLNFIYQIEM-----IKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMM 458 (590)
Q Consensus 385 a~~l~~~Gvd~i~v-----~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~ 458 (590)
|+.|.++|+|+|+| ++|+++. .+|||. +.+++.++++++...++||||+|||+++.|++|||++||++||+
T Consensus 311 a~~~~~aGad~i~vg~g~gsi~~~~~---~~g~g~p~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GA~~V~v 387 (511)
T 3usb_A 311 TKALIEAGANVVKVGIGPGSICTTRV---VAGVGVPQLTAVYDCATEARKHGIPVIADGGIKYSGDMVKALAAGAHVVML 387 (511)
T ss_dssp HHHHHHHTCSEEEECSSCSTTCCHHH---HHCCCCCHHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHhCCCEEEECCCCcccccccc---ccCCCCCcHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHhCchhhee
Confidence 99999999999998 7788888 889999 99999999988887789999999999999999999999999999
Q ss_pred CccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecccceeEEeeCCchhchHHHHHh
Q psy1056 459 GSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQC 538 (590)
Q Consensus 459 g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~~~~~~~~~~ 538 (590)
|++|++++||||++++++|+.||.||||||.+||.+ |+.+|||++..+.++|||+++.+||+|++.++|++|.+
T Consensus 388 Gs~~~~~~es~g~~~~~~g~~~k~~~gm~s~~a~~~------~~~~r~~~~~~~~~~~eG~~~~~~~~~~~~~~~~~~~~ 461 (511)
T 3usb_A 388 GSMFAGVAESPGETEIYQGRQFKVYRGMGSVGAMEK------GSKDRYFQEGNKKLVPEGIEGRVPYKGPLADTVHQLVG 461 (511)
T ss_dssp STTTTTBTTSSSCEEECSSSEEEC----------------------------------------CBCCBCHHHHHHHHHH
T ss_pred cHHHhcCccCchhhhhccCeeeeeeeccccHHHHhc------ccccchhccccccccCCCcEEeCCCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999974 78999999877788999999999999999999999999
Q ss_pred hhhhhCcccCcCcHHHHHHhhccCceEEEEEecCccccCCCCcccc
Q psy1056 539 GLKHGCQDIGAKSLSNLRAMMYSGELKFEKRTLCAQNEGSVHGLYS 584 (590)
Q Consensus 539 ~l~~~m~~~G~~~i~~l~~~~~~~~~~~~~~~~~~~~e~~~h~~~~ 584 (590)
+||++|+|+||++|+|||++ ++|+++|++|++||||||+..
T Consensus 462 ~lr~~m~~~G~~~i~~l~~~-----~~~~~~~~~~~~e~~~h~~~~ 502 (511)
T 3usb_A 462 GLRAGMGYCGAQDLEFLREN-----AQFIRMSGAGLLESHPHHVQI 502 (511)
T ss_dssp HHHHHHHHTTCSBHHHHHHH-----CCEEECCHHHHC---------
T ss_pred HHHHHHHhcCcccHHHHHhC-----CeEEEEcccccccCCCCCCCc
Confidence 99999999999999999998 999999999999999999874
|
| >1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-73 Score=622.41 Aligned_cols=458 Identities=28% Similarity=0.361 Sum_probs=299.0
Q ss_pred EeccccccccCCCCCC--C-CccCCccccccc-------ccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcch
Q psy1056 69 VTSRDVDFLENSANMD--L-KIEKDLSSPLTK-------KITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREAD 138 (590)
Q Consensus 69 vT~~Did~l~~~~~~~--~-~~~~~~~~~l~~-------~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~ 138 (590)
+|++ |+++.|++++ + |+++++++++++ .+.+..|+++++|++++++.++++++..|++|++|++.+
T Consensus 10 ~t~~--d~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~iP~vsa~m~~vt~~~la~~la~~gg~G~I~~~~~-- 85 (503)
T 1me8_A 10 HTFN--EYLLIPGLSTVDCIPSNVNLSTPLVKFQKGQQSEINLKIPLVSAIMQSVSGEKMAIALAREGGISFIFGSQS-- 85 (503)
T ss_dssp CCGG--GEEECCCCCCTTCCGGGCBCCEECSCEETTCCCSCEESSSEEECSCTTTCSHHHHHHHHHTTCEEEECCSSC--
T ss_pred cccc--cEEEcCCCCCCccCCCcceeeeeccccccccccceeecCceEeccchhhhHHHHHHHHHhCCCcceeeCCCC--
Confidence 8999 9999999999 7 899999999998 899999999999999999999999999999999999876
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCchHHHHHHHHHhhhcCCCcccccccccc---hHHHHHHHHHhccccccccccccCcee
Q psy1056 139 KYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCG 215 (590)
Q Consensus 139 ~~~~~~l~~~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~ 215 (590)
.+.+.+.+.+++. +.. .|..++.+ ++++.++++.| .++++++
T Consensus 86 -----------------------~e~~~~~v~~V~~-~e~--gM~~~~~~v~~~~tv~eal~~m---------~~~~~s~ 130 (503)
T 1me8_A 86 -----------------------IESQAAMVHAVKN-FKA--GFVVSDSNVKPDQTFADVLAIS---------QRTTHNT 130 (503)
T ss_dssp -----------------------HHHHHHHHHHHHT-TTC----------------------------------------
T ss_pred -----------------------HHHHHHHHhhhhh-ccc--CcccCCeEECCCCcHHHHHHHH---------HHcCceE
Confidence 5666667777776 321 16665555 99999999999 9999999
Q ss_pred eEEeeCCCCC---CeEEEEEecchhhccccccccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCc
Q psy1056 216 FPVTENGKLG---EKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGE 292 (590)
Q Consensus 216 ~pVvd~~~~~---~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~ 292 (590)
+||+|+ + ++++|+||.+|+++. ......+|+++|++..+++++++++++.+|+++|.+++++.+||+|++|+
T Consensus 131 ~pVvd~---~~~~g~lvGiVt~~Dl~~~--~~~~~~~V~diM~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe~g~ 205 (503)
T 1me8_A 131 VAVTDD---GTPHGVLLGLVTQRDYPID--LTQTETKVSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQH 205 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEC---CCcCCeEEEEEEHHHHHhh--hccccCcHHHHhCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcCCCe
Confidence 999997 5 799999999999863 12346889999998222999999999999999999999999999999999
Q ss_pred eEEEEeecccccccCCCCCCcccCCceEEeEeeccchhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCC-
Q psy1056 293 LIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPD- 371 (590)
Q Consensus 293 l~Giit~~dll~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~- 371 (590)
++|+||.+||++...+.....+..+++.+++.++. .+..+.++.+.+.|++++.++.++|+..++.+.++++++.+|+
T Consensus 206 lvGiIT~~Dil~~~~~~~~~~d~~~~l~v~a~v~~-~~~~e~~~~l~e~gv~~l~Vd~~~g~~~~~~~~i~~lk~~~~~~ 284 (503)
T 1me8_A 206 LRYIVFRKDYDRSQVCHNELVDSQKRYLVGAGINT-RDFRERVPALVEAGADVLCIDSSDGFSEWQKITIGWIREKYGDK 284 (503)
T ss_dssp ----------------CCCCBCTTSCBCCEEEECS-SSHHHHHHHHHHHTCSEEEECCSCCCSHHHHHHHHHHHHHHGGG
T ss_pred EEEEEEecHHHHhhhcccchhccccccccccccCc-hhHHHHHHHHHhhhccceEEecccCcccchhhHHHHHHHhCCCC
Confidence 99999999999998877766677778777777776 5667788999999999999999999998899999999999887
Q ss_pred ceEEeccccCcHHHHHHHHCCCCEEEE-----cccccccCCCcccccc-chhHHHHHHHHHhcC------CCcEEecCCC
Q psy1056 372 MQVIGGNVLFGYQPRATLLNFIYQIEM-----IKFIKKEYPDMQVIGR-NGTAVYRVAEYASRR------GVPVIADGGV 439 (590)
Q Consensus 372 vpvi~g~v~s~~~a~~l~~~Gvd~i~v-----~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~------~v~iia~GGi 439 (590)
+|+++|++.+.++|+.|+++|+|+|+| ++|++|. +.+||. +++++.++++++... ++|||+||||
T Consensus 285 ~~Vi~G~V~t~~~a~~l~~aGad~I~Vg~~~g~~~~~r~---~~~~g~p~~~~l~~v~~~~~~~~~~~~~~ipvia~GGi 361 (503)
T 1me8_A 285 VKVGAGNIVDGEGFRYLADAGADFIKIGIGGGSICITRE---QKGIGRGQATAVIDVVAERNKYFEETGIYIPVCSDGGI 361 (503)
T ss_dssp SCEEEEEECSHHHHHHHHHHTCSEEEECSSCSTTCCSTT---TTCCCCCHHHHHHHHHHHHHHHHHHHSEECCEEEESCC
T ss_pred ceEeeccccCHHHHHHHHHhCCCeEEecccCCcCccccc---ccCCCCchHHHHHHHHHHHHHHhhhcCCCceEEEeCCC
Confidence 999999999999999999999999998 4477888 899999 999999998887654 6999999999
Q ss_pred CCHHHHHHHHHcCCCEEEECccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhh-hccccceeeccc
Q psy1056 440 QSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYF-HNEMDKLKVAQG 518 (590)
Q Consensus 440 ~~~~di~kalalGA~~v~~g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~-~~~~~~~~~~eg 518 (590)
++|.|++|||+|||++||+|++|++++|||++.++.+|+.||.||||||.+||.. +|| |++..+.+++||
T Consensus 362 ~~~~di~kAlalGA~~V~iG~~~~~~~E~~~~~~~~~g~~~k~~~g~~s~~~~~~---------~~~~~~~~~~~~~~eg 432 (503)
T 1me8_A 362 VYDYHMTLALAMGADFIMLGRYFARFEESPTRKVTINGSVMKEYWGEGSSRARNW---------QRYDLGGKQKLSFEEG 432 (503)
T ss_dssp CSHHHHHHHHHTTCSEEEESHHHHTBTTSSSCEEEETTEEEEEEECTTSHHHHCC-----------------------CC
T ss_pred CCHHHHHHHHHcCCCEEEECchhhccccCCCceEEECCeEEEeecCccchhHhhc---------cccccccccceecccc
Confidence 9999999999999999999999999999999999999999999999999999852 566 654456789999
Q ss_pred ceeEEeeCCchhchHHHHHhhhhhhCcccCcCcHHHHHHhhccCceEEEEEecCccccCCCCcccccccc
Q psy1056 519 VSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRAMMYSGELKFEKRTLCAQNEGSVHGLYSYEKR 588 (590)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~l~~~m~~~G~~~i~~l~~~~~~~~~~~~~~~~~~~~e~~~h~~~~~~~~ 588 (590)
+++.+||||++.++|++|.++||++|+|+||+||+||+++ ++|+++|++|++||||||++++.+.
T Consensus 433 ~~~~~~~~~~v~~~~~~~~~~l~~~m~~~G~~~i~~l~~~-----~~~~~~~~~~~~e~~~~~~~~~~~~ 497 (503)
T 1me8_A 433 VDSYVPYAGKLKDNVEASLNKVKSTMCNCGALTIPQLQSK-----AKITLVSSVSIVEGGAHDVIVKDRI 497 (503)
T ss_dssp CEEEEECCBCHHHHHHHHHHHHHHHHHHTTCSBHHHHHHH-----CCEEECCTTCSTTTSCCSCC-----
T ss_pred eeEecCCCCcHHHHHHHHHHHHHHHHHhcCcchHHHHHhC-----CCEEEEcccccccCCCccceeeccC
Confidence 9999999999999999999999999999999999999998 8999999999999999999987654
|
| >1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-69 Score=593.44 Aligned_cols=476 Identities=59% Similarity=0.902 Sum_probs=329.9
Q ss_pred EEeccccccccCCCCCCC-CccCCcccccccccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHH
Q psy1056 68 IVTSRDVDFLENSANMDL-KIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLS 146 (590)
Q Consensus 68 ivT~~Did~l~~~~~~~~-~~~~~~~~~l~~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~ 146 (590)
-+|++ |+++.|.++.+ |..+++.+.+++.+.+..|+++++|+++++..++..++..|+.+++|.+.+
T Consensus 29 alt~d--dvlLmp~~s~~~p~~v~l~~eLt~~~~~~iP~vsa~md~~t~~~la~~ia~~gg~gii~~~~t---------- 96 (514)
T 1jcn_A 29 DLTYN--DFLILPGFIDFIADEVDLTSALTRKITLKTPLISSPMDTVTEADMAIAMALMGGIGFIHHNCT---------- 96 (514)
T ss_dssp CCCGG--GEEECCCCCCSCGGGCBCCEESSSSCEESSCEEECCCTTTCSHHHHHHHHHTTCEEEECCSSC----------
T ss_pred ccccC--cEEeccCccCCCcceeEEEeeccCCeeEeceEEEEehhhhhhhhHHHHHHhcCCeeEEecCCC----------
Confidence 37888 88888999998 888888899998899999999999999999999999999999999987655
Q ss_pred HcCCcEEEEcCCCCchHHHHHHHHHhhhcCCCcccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCC
Q psy1056 147 QAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGK 223 (590)
Q Consensus 147 ~~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~ 223 (590)
.+.+.+.+++++. .. ++|..++.+ ++++.++++.| .+++++.+||+|++.
T Consensus 97 ---------------~e~~~~~v~~v~~-~~--~im~~~~~~v~~~~tv~ea~~~m---------~~~~~~~~pVvd~~~ 149 (514)
T 1jcn_A 97 ---------------PEFQANEVRKVKN-FE--QGFITDPVVLSPSHTVGDVLEAK---------MRHGFSGIPITETGT 149 (514)
T ss_dssp ---------------HHHHHHHHHHHHT-CC--TTSCSSCCCCCC--------------------------CEESCC---
T ss_pred ---------------HHHHHHHHHhhhh-hh--hccccCCEEECCCCCHHHHHHHH---------HhcCCCEEEEEeCCC
Confidence 4555555666654 33 366555444 89999999999 999999999998611
Q ss_pred CCCeEEEEEecchhhccccccccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccc
Q psy1056 224 LGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLK 303 (590)
Q Consensus 224 ~~~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll 303 (590)
.+++++|+||.+|+++... .....+++++|++..+++++++++++.+++++|.+++++.+||+|++|+++|+||++|++
T Consensus 150 ~~~~lvGiVt~~Dl~~~~~-~~~~~~v~~vm~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll 228 (514)
T 1jcn_A 150 MGSKLVGIVTSRDIDFLAE-KDHTTLLSEVMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAIIARTDLK 228 (514)
T ss_dssp -----CCEECTTTTC-----------------CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEESSSSCCC----CCCCS
T ss_pred cCCEEEEEEEHHHHHhhhh-ccCCCCHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCCcccEECCCCeEEEEEEHHHHH
Confidence 1279999999999986431 124578999998534689999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCcccCCceEEeEeeccchhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcH
Q psy1056 304 KSRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGY 383 (590)
Q Consensus 304 ~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~ 383 (590)
+...++...++..+++.++++++......+.++.++++|+++++++.++|++....+.++++++.+|++|+++|++.+.+
T Consensus 229 ~~~~~~~~~~~~~~rl~vga~vG~~~~~~~~a~~~~~aG~d~v~i~~~~G~~~~~~~~i~~i~~~~~~~pvi~~~v~t~~ 308 (514)
T 1jcn_A 229 KNRDYPLASKDSQKQLLCGAAVGTREDDKYRLDLLTQAGVDVIVLDSSQGNSVYQIAMVHYIKQKYPHLQVIGGNVVTAA 308 (514)
T ss_dssp SCCCCTTCCBCTTSCBCCEEEECSSTTHHHHHHHHHHTTCSEEEECCSCCCSHHHHHHHHHHHHHCTTCEEEEEEECSHH
T ss_pred HHhhCcchhcccCCceeeeeEecCchhhHHHHHHHHHcCCCEEEeeccCCcchhHHHHHHHHHHhCCCCceEecccchHH
Confidence 99998887777778888888888777788899999999999999999999988888999999999988999999999999
Q ss_pred HHHHHHHCCCCEEEEc-----ccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEE
Q psy1056 384 QPRATLLNFIYQIEMI-----KFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAM 457 (590)
Q Consensus 384 ~a~~l~~~Gvd~i~v~-----~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~ 457 (590)
.|+.|.++|||+|+|+ .|+++. ..+||. +...+..+++.+...++|||++|||+++.|++||+++|||+|+
T Consensus 309 ~a~~l~~aGad~I~vg~~~G~~~~t~~---~~~~g~~~~~~~~~~~~~~~~~~ipVia~GGI~~~~di~kala~GAd~V~ 385 (514)
T 1jcn_A 309 QAKNLIDAGVDGLRVGMGCGSICITQE---VMACGRPQGTAVYKVAEYARRFGVPIIADGGIQTVGHVVKALALGASTVM 385 (514)
T ss_dssp HHHHHHHHTCSEEEECSSCSCCBTTBC---CCSCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHcCCCEEEECCCCCccccccc---ccCCCccchhHHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHcCCCeee
Confidence 9999999999999983 345666 778898 8888888888887778999999999999999999999999999
Q ss_pred ECccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecccceeEEeeCCchhchHHHHH
Q psy1056 458 MGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQ 537 (590)
Q Consensus 458 ~g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~~~~~~~~~ 537 (590)
+|++|+++.|+|++..+++|++||.||||+|.+||... +|+.+|||++..+.+++||+++.+|++|++.++|++|.
T Consensus 386 iG~~~l~~~e~~~~~~~~~g~~~k~~~g~~s~~~~~~~----~~~~~~~~~~~~~~~~~~gv~~~~~~~g~~~~~i~~l~ 461 (514)
T 1jcn_A 386 MGSLLAATTEAPGEYFFSDGVRLKKYRGMGSLDAMEKS----SSSQKRYFSEGDKVKIAQGVSGSIQDKGSIQKFVPYLI 461 (514)
T ss_dssp ESTTTTTSTTSSCC------------------------------------------------------CCCHHHHHHHHH
T ss_pred ECHHHHcCCcCCcceEeECCEEEEEecCcCCHHHHhhc----cccchhhccccccceecccceecCCCcccHHHHHHHHH
Confidence 99999999999999999999999999999999998741 25678999876667799999999999999999999999
Q ss_pred hhhhhhCcccCcCcHHHHHHhhccCceEEEEEecCccccCCCCcccccccccC
Q psy1056 538 CGLKHGCQDIGAKSLSNLRAMMYSGELKFEKRTLCAQNEGSVHGLYSYEKRLF 590 (590)
Q Consensus 538 ~~l~~~m~~~G~~~i~~l~~~~~~~~~~~~~~~~~~~~e~~~h~~~~~~~~~~ 590 (590)
++||++|+|+||+||+||++++++|.++|+++|++|++||||||+++|+|++|
T Consensus 462 ~~l~~~m~~~G~~~i~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 514 (514)
T 1jcn_A 462 AGIQHGCQDIGARSLSVLRSMMYSGELKFEKRTMSAQIEGGVHGLHSYEKRLY 514 (514)
T ss_dssp HHHHHHHHHHTCSBHHHHHHHHHTTCSCEEECCSSCCC---------------
T ss_pred HHHHHHHHhhCcccHHHHHhhcccCceEEEEechhhhhccCCceeEeeccCCC
Confidence 99999999999999999999999999999999999999999999999999987
|
| >2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-66 Score=566.27 Aligned_cols=452 Identities=32% Similarity=0.474 Sum_probs=301.5
Q ss_pred EeccccccccCCCCCCC-CccCCcccccccccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHH
Q psy1056 69 VTSRDVDFLENSANMDL-KIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQ 147 (590)
Q Consensus 69 vT~~Did~l~~~~~~~~-~~~~~~~~~l~~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~ 147 (590)
+|++ |+++.|+++++ ++++++.+.+++.+.+..|+++++|+++++..++.+++..||+|++|++.+
T Consensus 15 ~~~d--d~~~~p~~~~~~~~~v~l~t~lt~~l~l~~PIi~a~m~~vt~~ela~ava~~GglG~i~~~~~----------- 81 (486)
T 2cu0_A 15 YTFD--DVLLIPQATEVEPKDVDVSTRITPNVKLNIPILSAAMDTVTEWEMAVAMAREGGLGVIHRNMG----------- 81 (486)
T ss_dssp CCGG--GEEECCCCCSSCSTTCBCCEEEETTEEESSSEEECCCTTTCSHHHHHHHHHTTCEEEECSSSC-----------
T ss_pred cCcc--CEEEcCCcCCCCcceEEEEeeecCCcccccceEEccceeecHHHHHHHHHhcCCceeecCCCC-----------
Confidence 8999 89999999999 889999999999999999999999999999999999999999999998765
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHhhhcCCCcccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCC
Q psy1056 148 AGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKL 224 (590)
Q Consensus 148 ~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~ 224 (590)
.+.+.+++.++++ +. ++|..++.+ ++++.++++.| .+++++++||+++
T Consensus 82 --------------~e~~~~~I~~v~~-~~--~~m~~~~~~v~~~~tv~ea~~~~---------~~~~~~~~pVvd~--- 132 (486)
T 2cu0_A 82 --------------IEEQVEQVKRVKR-AE--RLIVEDVITIAPDETVDFALFLM---------EKHGIDGLPVVED--- 132 (486)
T ss_dssp --------------HHHHHHHHHHHHT-CC--------------------------------------------------
T ss_pred --------------HHHHHHHHHhhcc-hh--hccccCceEECCCCCHHHHHHHH---------HHcCCcEEEEEEC---
Confidence 4555566666665 43 256666655 88999999999 9999999999986
Q ss_pred CCeEEEEEecchhhccccccccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 225 GEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 225 ~~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
++++|+||.+|+++ . ...+++++|++ +++++++++++.+++++|.+++++.+||+|++|+++|+||.+|+++
T Consensus 133 -~~lvGivt~~Dl~~--~---~~~~v~~im~~--~~~~v~~~~~l~eal~~m~~~~~~~lpVVde~g~lvGiiT~~Dil~ 204 (486)
T 2cu0_A 133 -EKVVGIITKKDIAA--R---EGKLVKELMTK--EVITVPESIEVEEALKIMIENRIDRLPVVDERGKLVGLITMSDLVA 204 (486)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -CEEEEEEEHHHhcc--C---CCCCHHHHccC--CCeEECCcCcHHHHHHHHHHcCCCEEEEEecCCeEEEEEEHHHHHH
Confidence 89999999999986 1 35789999998 8999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCcccCCceEEeEeeccchhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHH
Q psy1056 305 SRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQ 384 (590)
Q Consensus 305 ~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~ 384 (590)
...+.....+..+.+.+...++. .+ .+.+..+.+.|++.++++..+|++.++++.++++++.+ ++|+++|++.++++
T Consensus 205 ~~~~~~~~~~~~g~~~v~~~~~~-~~-~~~a~~l~~~gvd~lvvdta~G~~~~~L~~I~~l~~~~-~vpvi~k~v~~~~~ 281 (486)
T 2cu0_A 205 RKKYKNAVRDENGELLVAAAVSP-FD-IKRAIELDKAGVDVIVVDTAHAHNLKAIKSMKEMRQKV-DADFIVGNIANPKA 281 (486)
T ss_dssp --CCTTCCBCTTSCBCCEEEECT-TC-HHHHHHHHHTTCSEEEEECSCCCCHHHHHHHHHHHHTC-CSEEEEEEECCHHH
T ss_pred hhhccccccccCCceeecceech-hh-HHHHHHHHHhcCCceEEEecCCcEeehhhHHHHHHHHh-CCccccCCcCCHHH
Confidence 98876555555666666666665 44 67788899999999999999999988999999999998 89999999999999
Q ss_pred HHHHHHCCCCEEEE-----cccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEE
Q psy1056 385 PRATLLNFIYQIEM-----IKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMM 458 (590)
Q Consensus 385 a~~l~~~Gvd~i~v-----~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~ 458 (590)
++.|. |+|+|+| ++|++|. +.+||. +.+++.++++.+...++|||++|||+++.|++|||++|||+|++
T Consensus 282 a~~l~--G~d~v~vg~g~g~~~~~r~---~~~~g~~~~~~l~~~~~~~~~~~vpVia~GGi~~~~di~kalalGA~~v~~ 356 (486)
T 2cu0_A 282 VDDLT--FADAVKVGIGPGSICTTRI---VAGVGVPQITAVAMVADRAQEYGLYVIADGGIRYSGDIVKAIAAGADAVML 356 (486)
T ss_dssp HTTCT--TSSEEEECSSCSTTBCHHH---HTCCCCCHHHHHHHHHHHHHHHTCEEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHhh--CCCeEEEeeeeccceeeeE---EeecCcchHHHHHHHHHHHHHcCCcEEecCCCCCHHHHHHHHHcCCCceee
Confidence 99988 9999998 7788888 899999 99999999888876789999999999999999999999999999
Q ss_pred CccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccc---cceeecccceeEEeeCCchhchHHH
Q psy1056 459 GSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEM---DKLKVAQGVSGAIVDKGSVLRFLPY 535 (590)
Q Consensus 459 g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~---~~~~~~eg~~~~~~~~~~~~~~~~~ 535 (590)
|++|++++|||++.++.+|+.||.||||||.+||.+ |+.+|||+.. ...+++||+++.+||+|++.+++++
T Consensus 357 g~~~~~~~e~~~~~~~~~g~~~k~~~g~~~~~a~~~------~~~~r~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 430 (486)
T 2cu0_A 357 GNLLAGTKEAPGKEVIINGRKYKQYRGMGSLGAMMK------GGAERYYQGGYMKTRKFVPEGVEGVVPYRGTVSEVLYQ 430 (486)
T ss_dssp STTTTTBTTCCSCEEEETTEEEEEEECTTSHHHHTC----------------CCCCSCSSCCBCEEEEECCBCHHHHHHH
T ss_pred ChhhhcCccCchhheeeCCcEEEEeecCCCHHHHhc------ccccccccccccccccccccceEEeecccCCHHHHHHH
Confidence 999999999999999999999999999999999975 5788898721 2346899999999999999999999
Q ss_pred HHhhhhhhCcccCcCcHHHHHHhhccCceEEEEEecCccccCCCCccccccccc
Q psy1056 536 LQCGLKHGCQDIGAKSLSNLRAMMYSGELKFEKRTLCAQNEGSVHGLYSYEKRL 589 (590)
Q Consensus 536 ~~~~l~~~m~~~G~~~i~~l~~~~~~~~~~~~~~~~~~~~e~~~h~~~~~~~~~ 589 (590)
|.++||++|+|+||++++||++. ..|+++|++|++||||||+++++++.
T Consensus 431 l~~~lr~~m~~~G~~~~~~l~~~-----~~~~~~~~~~~~e~~~~~~~~~~~~~ 479 (486)
T 2cu0_A 431 LVGGLKAGMGYVGARNIRELKEK-----GEFVIITHAGIKESHPHDIIITNEAP 479 (486)
T ss_dssp HHHHHHHHHHHTTCSBHHHHHHH-----CCEEECCHHHHHHHSCCSSCCSCCCC
T ss_pred HHHHHHHhcccCCcCCHHHHHhh-----CCEEEEcccccccCCCcccceeccCC
Confidence 99999999999999999999998 89999999999999999999887754
|
| >1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-65 Score=561.94 Aligned_cols=462 Identities=34% Similarity=0.496 Sum_probs=281.7
Q ss_pred EeccccccccCCCCCCC-CccCCcccccccccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHH
Q psy1056 69 VTSRDVDFLENSANMDL-KIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQ 147 (590)
Q Consensus 69 vT~~Did~l~~~~~~~~-~~~~~~~~~l~~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~ 147 (590)
+|+. |+++.|.++++ |.++++++.+++.+.+..|+++++|+++++..+++++++.||+|++|++.+
T Consensus 17 ~~~~--dvll~p~~s~~~p~~v~~~~eLt~~~~l~iP~is~~m~~v~~~~lA~al~~~GglG~i~~~~~----------- 83 (494)
T 1vrd_A 17 LTFD--DVLLVPQYSEVLPKDVKIDTRLTRQIRINIPLVSAAMDTVTEAALAKALAREGGIGIIHKNLT----------- 83 (494)
T ss_dssp CCGG--GEEECCCCCCCCGGGSCCCEESSSSCEESSSEEECCCTTTCSHHHHHHHHTTTCEEEECSSSC-----------
T ss_pred cccc--cEEeccccccCCCCceEEEehhhCCCccCceeEecchHHHhHHHHHHHHHHcCCceEEecCCC-----------
Confidence 8899 88888999999 889999999998999999999999999999999999999999999998876
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHhhhcCCCcccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCC
Q psy1056 148 AGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKL 224 (590)
Q Consensus 148 ~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~ 224 (590)
.+.+...+.++++ .. ++|..++.+ ++++.++++.| .+++++.+||+|+
T Consensus 84 --------------~e~~~~~v~~v~~-~~--~iM~~~~~~v~~~~tv~ea~~~m---------~~~~~~~~pVvd~--- 134 (494)
T 1vrd_A 84 --------------PDEQARQVSIVKK-TE--NGIIYDPITVTPDMTVKEAIDLM---------AEYKIGGLPVVDE--- 134 (494)
T ss_dssp --------------HHHHHHHHHHHHT-C---------------------------------------------------
T ss_pred --------------hHHHHHHHHhhhh-Hh--hcCccCCeEECCCCCHHHHHHHH---------HHcCceEEEEEcC---
Confidence 4445555666654 33 367766655 88999999999 9999999999997
Q ss_pred CCeEEEEEecchhhccccccccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 225 GEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 225 ~~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
+++++|+||.+|+++... ...+++++|++..+++++++++++.+++++|.+++++.+||+|++|+++|+||..|+++
T Consensus 135 ~~~lvGivt~~Dl~~~~~---~~~~v~~im~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~ 211 (494)
T 1vrd_A 135 EGRLVGLLTNRDVRFEKN---LSKKIKDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIMS 211 (494)
T ss_dssp -----------------------------------------------------------------------------CHH
T ss_pred CCEEEEEEEHHHHHhhcC---CCCcHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHh
Confidence 689999999999986432 35789999985447899999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCcccCCceEEeEeeccchhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHH
Q psy1056 305 SRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQ 384 (590)
Q Consensus 305 ~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~ 384 (590)
...++...++..+++.+++.++......+.+..++++|++.+.++..+|+.....+.++++++.+|++|+++|++.+.++
T Consensus 212 ~~~~~~~~~D~~~~l~vga~ig~~~~~~~~a~~l~~aGvd~v~i~~~~G~~~~~~e~i~~i~~~~p~~pvi~g~~~t~e~ 291 (494)
T 1vrd_A 212 VIEHPNAARDEKGRLLVGAAVGTSPETMERVEKLVKAGVDVIVIDTAHGHSRRVIETLEMIKADYPDLPVVAGNVATPEG 291 (494)
T ss_dssp HHTCTTCCBCTTSCBCCEEEECSSTTHHHHHHHHHHTTCSEEEECCSCCSSHHHHHHHHHHHHHCTTSCEEEEEECSHHH
T ss_pred hhccccccccchhhhccccccCcCHhHHHHHHHHHHhCCCEEEEEecCCchHHHHHHHHHHHHHCCCceEEeCCcCCHHH
Confidence 99888777777778888888887777888999999999999999999998888899999999999889999999999999
Q ss_pred HHHHHHCCCCEEEEcc-----cccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEE
Q psy1056 385 PRATLLNFIYQIEMIK-----FIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMM 458 (590)
Q Consensus 385 a~~l~~~Gvd~i~v~~-----~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~ 458 (590)
|+.|.++|+|+|.|+. |+++. +.+||. +..++.++++.+...++|||++|||+++.|++|||++|||+|++
T Consensus 292 a~~l~~~G~d~I~v~~~~G~~~~~~~---~~~~g~p~~~~l~~v~~~~~~~~ipvia~GGI~~~~di~kala~GAd~V~i 368 (494)
T 1vrd_A 292 TEALIKAGADAVKVGVGPGSICTTRV---VAGVGVPQLTAVMECSEVARKYDVPIIADGGIRYSGDIVKALAAGAESVMV 368 (494)
T ss_dssp HHHHHHTTCSEEEECSSCSTTCHHHH---HHCCCCCHHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHcCCCEEEEcCCCCccccccc---cCCCCccHHHHHHHHHHHHhhcCCCEEEECCcCCHHHHHHHHHcCCCEEEE
Confidence 9999999999998854 33455 677888 88888888887766689999999999999999999999999999
Q ss_pred CccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecccceeEEeeCCchhchHHHHHh
Q psy1056 459 GSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQC 538 (590)
Q Consensus 459 g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~~~~~~~~~~ 538 (590)
|++|+++.|||++.++++|..||.||||||..||.. |+.++||+...+.+++||+++.+|+++++.+++++|..
T Consensus 369 Gr~~l~~~e~~~~~~~~~~~~~k~~~g~~~~~a~~~------g~~~~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~l~~ 442 (494)
T 1vrd_A 369 GSIFAGTEEAPGETILYQGRKYKAYRGMGSLGAMRS------GSADRYGQEGENKFVPEGIEGMVPYKGTVKDVVHQLVG 442 (494)
T ss_dssp SHHHHTBTTSSSEEEEETTEEEEECBCCC-------------------------------CBCCEECCBCHHHHHHHHHH
T ss_pred CHHHhcCCcCCcceEEECCEEEEEEeccchHHHHhh------ccccchhhcccccccCCcceEccCcCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999875 67889997544456899999999999999999999999
Q ss_pred hhhhhCcccCcCcHHHHHHhhccCceEEEEEecCccccCCCCccccccccc
Q psy1056 539 GLKHGCQDIGAKSLSNLRAMMYSGELKFEKRTLCAQNEGSVHGLYSYEKRL 589 (590)
Q Consensus 539 ~l~~~m~~~G~~~i~~l~~~~~~~~~~~~~~~~~~~~e~~~h~~~~~~~~~ 589 (590)
+||++|+++|+.++.||+.. ..|+++|.++++||||||+++++++.
T Consensus 443 ~l~~~~~~~G~~~~~~l~~~-----~~~~~~~~~~~~e~~~~~~~~~~~~~ 488 (494)
T 1vrd_A 443 GLRSGMGYIGARTIKELQEK-----AVFVKITPAGVKESHPHDIIITKESP 488 (494)
T ss_dssp HHHHHHHHHTCSSHHHHHHH-----CCEEECC-------------------
T ss_pred HHHHHhhhcCCCCHHHHHhh-----CCEEEEcccccccCCCccceeeccCC
Confidence 99999999999999999998 88999999999999999999988754
|
| >1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-62 Score=540.05 Aligned_cols=461 Identities=29% Similarity=0.453 Sum_probs=402.7
Q ss_pred EeccccccccCCCCCCC-CccCCcccccccccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHH
Q psy1056 69 VTSRDVDFLENSANMDL-KIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQ 147 (590)
Q Consensus 69 vT~~Did~l~~~~~~~~-~~~~~~~~~l~~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~ 147 (590)
+|++ |+++.|.++.+ |+++++++++++.+.++.|+++++|+++++..++.+++..||+|+++.+.+
T Consensus 12 ~~~~--d~~~~p~~~~~~p~~v~~~t~lt~~l~~~~Piv~a~M~~vt~~eLa~av~~~Gg~G~i~~~~~----------- 78 (491)
T 1zfj_A 12 YTFD--DVLLIPAESHVLPNEVDLKTKLADNLTLNIPIITAAMDTVTGSKMAIAIARAGGLGVIHKNMS----------- 78 (491)
T ss_dssp CCGG--GEEECCCCCCSCGGGCCCCEEEETTEEESSSEEECCCTTTCSHHHHHHHHHTTCEEEECCSSC-----------
T ss_pred CChh--hEEeccCcCCcCccccccchhhhhcceecCceEecCchhccHHHHHHHHHHcCCceEEeCCCC-----------
Confidence 8999 89999999998 889999999999899999999999999999999999999999999987654
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHhhhcCCCcccccccccc---hHHHHHHHHHhccccccccccccCceeeEEee--CC
Q psy1056 148 AGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTE--NG 222 (590)
Q Consensus 148 ~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd--~~ 222 (590)
.+.+.+++++++. +. ++|..++.+ ++++.++++.| .+++++++||++ +
T Consensus 79 --------------~e~~~~~i~~v~~-~~--~im~~~~~~v~~~~tv~ea~~~m---------~~~~~~~~pVvd~~~- 131 (491)
T 1zfj_A 79 --------------ITEQAEEVRKVKR-SE--NGVIIDPFFLTPEHKVSEAEELM---------QRYRISGVPIVETLA- 131 (491)
T ss_dssp --------------HHHHHHHHHHHHH-HT--TTTSSSCCCBCSSSBHHHHHHHH---------HHTTCSEEEEESCTT-
T ss_pred --------------HHHHHHHHHHHhh-HH--hcCcCCCeEECCCCcHHHHHHHH---------HHcCCCEEEEEEeCC-
Confidence 3344444555554 32 377776665 88999999999 999999999998 6
Q ss_pred CCCCeEEEEEecchhhccccccccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccc
Q psy1056 223 KLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDL 302 (590)
Q Consensus 223 ~~~~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dl 302 (590)
+++++|+||.+|++.... ...+++++|++ .+++++++++++.+++++|.+++++.+||+|++|+++|++|..|+
T Consensus 132 --~~~lvGivt~~Dl~~~~~---~~~~v~~im~~-~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGivt~~Di 205 (491)
T 1zfj_A 132 --NRKLVGIITNRDMRFISD---YNAPISEHMTS-EHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDI 205 (491)
T ss_dssp --TCBEEEEEEHHHHHHCSC---SSSBTTTSCCC-SCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHH
T ss_pred --CCEEEEEEEHHHHhhhcc---CCCcHHHHcCC-CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHH
Confidence 699999999999985432 35889999984 257899999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCcccCCceEEeEeeccchhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCc
Q psy1056 303 KKSRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFG 382 (590)
Q Consensus 303 l~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~ 382 (590)
++....+....+..+.+.++..++......+.+..+.++|++.++++.+.|+....++.++++++.+|++|++.|++.+.
T Consensus 206 l~~~~~~~~~~d~~~~~~vg~~i~~~~~~~~~a~~l~~~G~d~ivi~~a~g~~~~~~~~i~~l~~~~p~~pvi~G~v~t~ 285 (491)
T 1zfj_A 206 EKVIEFPHAAKDEFGRLLVAAAVGVTSDTFERAEALFEAGADAIVIDTAHGHSAGVLRKIAEIRAHFPNRTLIAGNIATA 285 (491)
T ss_dssp HHHHHCTTCCBCTTSCBCCEEEECSSTTHHHHHHHHHHHTCSEEEECCSCTTCHHHHHHHHHHHHHCSSSCEEEEEECSH
T ss_pred HHHHhccccccCcCCcEEEEEeccCchhHHHHHHHHHHcCCCeEEEeeecCcchhHHHHHHHHHHHCCCCcEeCCCccCH
Confidence 99988766666666666777777776777888999999999999999988888888899999999998999999999999
Q ss_pred HHHHHHHHCCCCEEEEc-----ccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEE
Q psy1056 383 YQPRATLLNFIYQIEMI-----KFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTA 456 (590)
Q Consensus 383 ~~a~~l~~~Gvd~i~v~-----~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v 456 (590)
+.++.+.++|+|+|+|+ .|+++. +.+||. +..++.+++..+...++|||++|||+++.|++||+++||++|
T Consensus 286 ~~a~~~~~~Gad~I~vg~g~g~~~~tr~---~~~~~~p~~~~l~~~~~~~~~~~ipvia~GGi~~~~di~kal~~GA~~v 362 (491)
T 1zfj_A 286 EGARALYDAGVDVVKVGIGPGSICTTRV---VAGVGVPQVTAIYDAAAVAREYGKTIIADGGIKYSGDIVKALAAGGNAV 362 (491)
T ss_dssp HHHHHHHHTTCSEEEECSSCCTTBCHHH---HTCCCCCHHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHcCCCEEEECccCCcceEEee---ecCCCCCcHHHHHHHHHHHhhcCCCEEeeCCCCCHHHHHHHHHcCCcce
Confidence 99999999999999995 477777 788888 888898888877667899999999999999999999999999
Q ss_pred EECccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccc---cceeecccceeEEeeCCchhchH
Q psy1056 457 MMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEM---DKLKVAQGVSGAIVDKGSVLRFL 533 (590)
Q Consensus 457 ~~g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~---~~~~~~eg~~~~~~~~~~~~~~~ 533 (590)
++|++|..++|+|++.++.+|++||.||||+|.+||.+ |+.+|||... ....++||+++.+|+++++.+++
T Consensus 363 ~vG~~~~~~~e~~~~~~~~~g~~~k~~~g~~~~~a~~~------~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~ 436 (491)
T 1zfj_A 363 MLGSMFAGTDEAPGETEIYQGRKYKTYRGMGSIAAMKK------GSSDRYFQGSVNEANKLVPEGIEGRVAYKGAASDIV 436 (491)
T ss_dssp EESTTTTTBSSCCCCEEEETTEEEEEEECTTSHHHHCC--------------------CCCCCSBCEEEEECCBCHHHHH
T ss_pred eeCHHhhCCCcCcceEEEECCEEEEEEecccCHHHHhc------cccccccccccccccccCcCcceEecCcCCCHHHHH
Confidence 99999999999999999999999999999999999975 5778888632 23457999999999999999999
Q ss_pred HHHHhhhhhhCcccCcCcHHHHHHhhccCceEEEEEecCccccCCCCccccccccc
Q psy1056 534 PYLQCGLKHGCQDIGAKSLSNLRAMMYSGELKFEKRTLCAQNEGSVHGLYSYEKRL 589 (590)
Q Consensus 534 ~~~~~~l~~~m~~~G~~~i~~l~~~~~~~~~~~~~~~~~~~~e~~~h~~~~~~~~~ 589 (590)
++|..+||++|+++||+++.+|++. ..|+++|+++++||||||+++|+++.
T Consensus 437 ~~l~~~l~~~~~~~G~~~~~~l~~~-----~~~~~~~~~~~~e~~~~~~~~~~~~~ 487 (491)
T 1zfj_A 437 FQMLGGIRSGMGYVGAGDIQELHEN-----AQFVEMSGAGLIESHPHDVQITNEAP 487 (491)
T ss_dssp HHHHHHHHHHHHHTTCSSHHHHHHH-----CCEEECCHHHHHHHSCCSSCCSSCBT
T ss_pred HHHHHHHHHHhhhcCcccHHHHHhc-----CcEEEEcccccccCCCccceeeccCC
Confidence 9999999999999999999999998 88999999999999999999998864
|
| >3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-60 Score=500.91 Aligned_cols=376 Identities=32% Similarity=0.427 Sum_probs=268.7
Q ss_pred EEEEeccccccccCCCCCCC-CccCCcccccccccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHH
Q psy1056 66 LGIVTSRDVDFLENSANMDL-KIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKL 144 (590)
Q Consensus 66 vGivT~~Did~l~~~~~~~~-~~~~~~~~~l~~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~ 144 (590)
---+|++ |+++.|+++++ ++++++++++++.+.++.|+++++|+++++..|++++++.||+|++|.+.+
T Consensus 7 ~~~~t~d--dvll~P~~~~~~~~~v~l~t~lt~~l~l~~PIi~a~M~~Vs~~~lA~Ava~aGGlGvi~~~~~-------- 76 (400)
T 3ffs_A 7 GKGLTFE--DILLVPNYSEVLPREVSLETKLTKNVSLKIPLISSAMDTVTEHLMAVGMARLGGIGIIHKNMD-------- 76 (400)
T ss_dssp EEECCGG--GEEECCCCBCSCGGGCCCCEESSSSCEESSSEEECSCTTTCSSHHHHHHHTTTCEEEECSSSC--------
T ss_pred ccCCCce--eEEEecCCCccCHHHccCccchhcccCCCCCEEeCCCCCcCcHHHHHHHHHCCCEEEeCCCCC--------
Confidence 3458999 99999999998 889999999999999999999999999999999999999999999999877
Q ss_pred HHHcCCcEEEEcCCCCchHHHHHHHHHhhhcCCCcccccccccchHHHHHHHHHhccccccccccccCceeeEEeeCCCC
Q psy1056 145 LSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKL 224 (590)
Q Consensus 145 l~~~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~im~~~~~~~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~ 224 (590)
.+.+.++++++|. +... ++.. |+.
T Consensus 77 -----------------~e~~~~~i~~vk~-~~~g-~~~~--------------------------------P~~----- 100 (400)
T 3ffs_A 77 -----------------MESQVNEVLKVKN-WISN-LEKN--------------------------------EST----- 100 (400)
T ss_dssp -----------------HHHHHHHHHHHHC-CC-----------------------------------------------
T ss_pred -----------------HHHHHHHHHHHHh-hccC-cccC--------------------------------CCC-----
Confidence 7777778887775 2211 0000 110
Q ss_pred CCeEEEEEecchhhccccccccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 225 GEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 225 ~~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
|. . +++ ++..++++ .+|+.+
T Consensus 101 ------------------------~~-----~--nL~--~~~~~~~~---------------------------~~~~~~ 120 (400)
T 3ffs_A 101 ------------------------PD-----Q--NLD--KESTDGKD---------------------------TKSNNN 120 (400)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------------------------cc-----c--ccc--CCCCCHHH---------------------------HHHHHH
Confidence 00 0 111 01111111 455556
Q ss_pred ccCCCCCCcccCCceEEeEeeccchhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHH
Q psy1056 305 SRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQ 384 (590)
Q Consensus 305 ~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~ 384 (590)
...++...++..+++.+++.++... .+.++.++++|++++++++++|++..+.+.++++++.+ ++|+++|+|.|.+.
T Consensus 121 ~~~~p~~~~d~~g~l~v~~~v~~~~--~e~~~~lveaGvdvIvldta~G~~~~~~e~I~~ik~~~-~i~Vi~g~V~t~e~ 197 (400)
T 3ffs_A 121 IDAYSNENLDNKGRLRVGAAIGVNE--IERAKLLVEAGVDVIVLDSAHGHSLNIIRTLKEIKSKM-NIDVIVGNVVTEEA 197 (400)
T ss_dssp --CCTTCCBCTTSSBCCEEEECCC---CHHHHHHHHHTCSEEEECCSCCSBHHHHHHHHHHHTTC-CCEEEEEEECSHHH
T ss_pred hhhCcchhhccccceeEEeecCCCH--HHHHHHHHHcCCCEEEEeCCCCCcccHHHHHHHHHhcC-CCeEEEeecCCHHH
Confidence 6666666666677777788887664 78899999999999999999999888899999999988 89999999999999
Q ss_pred HHHHHHCCCCEEEE-----cccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEE
Q psy1056 385 PRATLLNFIYQIEM-----IKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMM 458 (590)
Q Consensus 385 a~~l~~~Gvd~i~v-----~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~ 458 (590)
|+.+.++|||+|.+ ++|+++. ..++|. +.+++.++++.+...++||||+|||+++.|++|||++||++||+
T Consensus 198 A~~a~~aGAD~I~vG~g~Gs~~~tr~---~~g~g~p~~~al~~v~~~~~~~~IPVIA~GGI~~~~di~kalalGAd~V~v 274 (400)
T 3ffs_A 198 TKELIENGADGIKVGIGPGSICTTRI---VAGVGVPQITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMI 274 (400)
T ss_dssp HHHHHHTTCSEEEECC---------C---CSCBCCCHHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHTTTCSEEEE
T ss_pred HHHHHHcCCCEEEEeCCCCcCccccc---ccccchhHHHHHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCCCEEEE
Confidence 99999999999988 3567777 778888 88889999888766789999999999999999999999999999
Q ss_pred CccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccc--cceeecccceeEEeeCCchhchHHHH
Q psy1056 459 GSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEM--DKLKVAQGVSGAIVDKGSVLRFLPYL 536 (590)
Q Consensus 459 g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~--~~~~~~eg~~~~~~~~~~~~~~~~~~ 536 (590)
|++|++|+|||++.++.+|++||.||||||++||.+ |+.+|||++. .+.+++||+++.|||+|++.++|.++
T Consensus 275 Gt~f~~t~Es~~~~~~~~g~~~k~y~Gm~s~~am~~------~~~~ry~~~~~~~~~~~~eG~~~~v~~~g~~~~~~~~~ 348 (400)
T 3ffs_A 275 GSILAGTEESPGEKELIGDTVYKYYRGMGSVGAMKS------GSGDRYFQEKRPENKMVPEGIEGRVKYKGEMEGVVYQL 348 (400)
T ss_dssp CGGGTTBTTSSCCEEESSSSEEEC-----------------------------------------CEECCBCHHHHHHHH
T ss_pred ChHHhcCCCCCchhhhcCCeeeeeecCcchHHHHhc------cccchhhcccccccccCCCCcEEecCCCCCHHHHHHHH
Confidence 999999999999999999999999999999999964 7889999863 45789999999999999999999999
Q ss_pred HhhhhhhCcccCcCcHHHHHHhhccCceEEEEEecCccccCCCCcccc
Q psy1056 537 QCGLKHGCQDIGAKSLSNLRAMMYSGELKFEKRTLCAQNEGSVHGLYS 584 (590)
Q Consensus 537 ~~~l~~~m~~~G~~~i~~l~~~~~~~~~~~~~~~~~~~~e~~~h~~~~ 584 (590)
.++||++|+|+|++||+|||++ ++|+++|++|++||||||+..
T Consensus 349 ~~glr~~~~y~G~~~i~el~~~-----~~f~~~t~~~~~e~~~h~~~~ 391 (400)
T 3ffs_A 349 VGGLRSCMGYLGSASIEELWKK-----SSYVEITTSGLRESHVHDVEI 391 (400)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHH-----CCEEECCC-------------
T ss_pred HHHHHHhhhhcCcccHHHHHhC-----CeEEEEccchhhcCCCCCccc
Confidence 9999999999999999999998 999999999999999999873
|
| >4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-58 Score=478.25 Aligned_cols=334 Identities=35% Similarity=0.496 Sum_probs=284.8
Q ss_pred EeccccccccCCCCCCC-CccCCcccccccccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHH
Q psy1056 69 VTSRDVDFLENSANMDL-KIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQ 147 (590)
Q Consensus 69 vT~~Did~l~~~~~~~~-~~~~~~~~~l~~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~ 147 (590)
+|++ |+++.|.++++ ++++++++++++.+.++.|+++++|+++++..++.++++.||+|++|.+.+
T Consensus 14 ~~fd--dv~lvp~~~~~~~~~vdl~t~lt~~~~l~~Pii~apM~~vs~~~lA~avA~aGGlg~i~~~~s----------- 80 (366)
T 4fo4_A 14 LTFD--DVLLVPAHSTVLPNTADLRTRLTKNIALNIPMVSASMDTVTEARLAIALAQEGGIGFIHKNMS----------- 80 (366)
T ss_dssp CCGG--GEEECCCCCCCCGGGCBCCEEEETTEEESSSEEECCCTTTCSHHHHHHHHHTTCEEEECSSSC-----------
T ss_pred CCcc--eEEEECCCCCCChhhcccceecccccccCCCEEeCCCCCCChHHHHHHHHHcCCceEeecCCC-----------
Confidence 7899 88889999998 889999999998899999999999999999999999999999999987654
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHhhhcCCCcccccccccchHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCe
Q psy1056 148 AGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEK 227 (590)
Q Consensus 148 ~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~im~~~~~~~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~ 227 (590)
.+.+.+.++++++
T Consensus 81 --------------~e~~~~~i~~vk~----------------------------------------------------- 93 (366)
T 4fo4_A 81 --------------IEQQAAQVHQVKI----------------------------------------------------- 93 (366)
T ss_dssp --------------HHHHHHHHHHHHT-----------------------------------------------------
T ss_pred --------------HHHHHHHHHHHHh-----------------------------------------------------
Confidence 3333333333321
Q ss_pred EEEEEecchhhccccccccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccC
Q psy1056 228 LLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRD 307 (590)
Q Consensus 228 lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~ 307 (590)
.
T Consensus 94 -------------------------------~------------------------------------------------ 94 (366)
T 4fo4_A 94 -------------------------------S------------------------------------------------ 94 (366)
T ss_dssp -------------------------------T------------------------------------------------
T ss_pred -------------------------------c------------------------------------------------
Confidence 0
Q ss_pred CCCCCcccCCceEEeEeeccchhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHH
Q psy1056 308 YPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRA 387 (590)
Q Consensus 308 ~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~ 387 (590)
+++.+++.++...+..+.++.++++|++++++++++|++..+++.++++++.+|++|+++|++.|.+.|++
T Consensus 95 ---------~~l~vga~vg~~~~~~~~~~~lieaGvd~I~idta~G~~~~~~~~I~~ik~~~p~v~Vi~G~v~t~e~A~~ 165 (366)
T 4fo4_A 95 ---------GGLRVGAAVGAAPGNEERVKALVEAGVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARA 165 (366)
T ss_dssp ---------TSCCCEEECCSCTTCHHHHHHHHHTTCSEEEEECSCTTSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHH
T ss_pred ---------CceeEEEEeccChhHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHhcCCCceEeeeeCCHHHHHH
Confidence 01112223333334567889999999999999999999888899999999999999999999999999999
Q ss_pred HHHCCCCEEEE-----cccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcc
Q psy1056 388 TLLNFIYQIEM-----IKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSL 461 (590)
Q Consensus 388 l~~~Gvd~i~v-----~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~ 461 (590)
|.++|||+|.+ ++|+++. ..+||. +.+++.+++++++..++|||++|||+++.|++|||++|||+||+|++
T Consensus 166 a~~aGAD~I~vG~gpGs~~~tr~---~~g~g~p~~~~l~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~vGs~ 242 (366)
T 4fo4_A 166 LIEAGVSAVKVGIGPGSICTTRI---VTGVGVPQITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMVGSM 242 (366)
T ss_dssp HHHHTCSEEEECSSCSTTBCHHH---HHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEESTT
T ss_pred HHHcCCCEEEEecCCCCCCCccc---ccCcccchHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChH
Confidence 99999999998 5677777 788998 89999999888777789999999999999999999999999999999
Q ss_pred ccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccc--cceeecccceeEEeeCCchhchHHHHHhh
Q psy1056 462 LAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEM--DKLKVAQGVSGAIVDKGSVLRFLPYLQCG 539 (590)
Q Consensus 462 l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~--~~~~~~eg~~~~~~~~~~~~~~~~~~~~~ 539 (590)
|++++|||++.++++|++||.||||||.+||.+ |+.+|||++. .+.++|||+++.|||||++.++|.++.++
T Consensus 243 f~~t~Esp~~~~~~~g~~~k~y~gm~s~~am~~------~~~~ry~~~~~~~~~~~~eg~~~~v~~~g~~~~~~~~~~~g 316 (366)
T 4fo4_A 243 FAGTEEAPGEVILYQGRSYKAYRGMGSLGAMSK------GSSDRYFQTDNAADKLVPEGIEGRIAYKGHLKEIIHQQMGG 316 (366)
T ss_dssp TTTBTTSSSCCEEETTEEEEEEECTTSHHHHCC---------------------CCCSBCEEEEECCBCHHHHHHHHHHH
T ss_pred hhcCCCCCchhhhhCCceeEEeeccccHHHHhc------ccccchhccccccccccCCCcEEecCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999974 6889999864 35789999999999999999999999999
Q ss_pred hhhhCcccCcCcHHHHHHhhccCceEEEEEecCccccCCCCcccc
Q psy1056 540 LKHGCQDIGAKSLSNLRAMMYSGELKFEKRTLCAQNEGSVHGLYS 584 (590)
Q Consensus 540 l~~~m~~~G~~~i~~l~~~~~~~~~~~~~~~~~~~~e~~~h~~~~ 584 (590)
||++|+|+|++||+|||++ ++|+++|++|++||||||+..
T Consensus 317 lr~~~~y~g~~~~~~~~~~-----~~f~~~t~~~~~e~~~h~~~~ 356 (366)
T 4fo4_A 317 LRSCMGLTGSATVEDLRTK-----AQFVRISGAGMKESHVHDVQI 356 (366)
T ss_dssp HHHHHHHHTCSBHHHHHHH-----CCEEECCHHHHHHHSCCSSCC
T ss_pred HHHhhhccCcccHHHHHhC-----CeEEEEccchhhccCCCCCcc
Confidence 9999999999999999998 999999999999999999874
|
| >3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-55 Score=458.04 Aligned_cols=332 Identities=36% Similarity=0.475 Sum_probs=250.9
Q ss_pred EEeccccccccCCCCCCC-CccCCcccccccccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHH
Q psy1056 68 IVTSRDVDFLENSANMDL-KIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLS 146 (590)
Q Consensus 68 ivT~~Did~l~~~~~~~~-~~~~~~~~~l~~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~ 146 (590)
-+|++ |+++.|+++++ ++++++++++++.+.++.|+++++|+++++..++.++++.||+|++|++.+
T Consensus 12 ~~~fd--dv~l~p~~~~~~~~~vdl~t~l~~~~~l~~Pii~apM~~vt~~~lA~avA~~GGlgii~~~~s---------- 79 (361)
T 3khj_A 12 GLTFE--DILLVPNYSEVLPREVSLETKLTKNVSLKIPLISSAMDTVTEHLMAVGMARLGGIGIIHKNMD---------- 79 (361)
T ss_dssp CCCGG--GEEECCCCBCCCGGGCCCCEESSSSCEESSSEEECSSTTTCSHHHHHHHHHTTCEEEECSSSC----------
T ss_pred CCCcc--eEEEECCCCCCCHHHccCceecccccccCCCEEeecCCCCCcHHHHHHHHHcCCCeEEecCCC----------
Confidence 38999 88889999988 889999999998899999999999999999999999999999999987654
Q ss_pred HcCCcEEEEcCCCCchHHHHHHHHHhhhcCCCcccccccccchHHHHHHHHHhccccccccccccCceeeEEeeCCCCCC
Q psy1056 147 QAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGE 226 (590)
Q Consensus 147 ~~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~im~~~~~~~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~ 226 (590)
.+.+.+.+++++. .
T Consensus 80 ---------------~e~~~~~I~~vk~-~-------------------------------------------------- 93 (361)
T 3khj_A 80 ---------------MESQVNEVLKVKN-S-------------------------------------------------- 93 (361)
T ss_dssp ---------------HHHHHHHHHHHHH-T--------------------------------------------------
T ss_pred ---------------HHHHHHHHHHHHh-c--------------------------------------------------
Confidence 2222222222221 0
Q ss_pred eEEEEEecchhhccccccccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccccc
Q psy1056 227 KLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSR 306 (590)
Q Consensus 227 ~lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~ 306 (590)
T Consensus 94 -------------------------------------------------------------------------------- 93 (361)
T 3khj_A 94 -------------------------------------------------------------------------------- 93 (361)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCcccCCceEEeEeeccchhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHH
Q psy1056 307 DYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPR 386 (590)
Q Consensus 307 ~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~ 386 (590)
.++.++++++... .+.++.++++|+++++++.++|++..+.+.++++++.+ ++|+++|++.+.+.|+
T Consensus 94 ----------~~~pvga~ig~~~--~e~a~~l~eaGad~I~ld~a~G~~~~~~~~i~~i~~~~-~~~Vivg~v~t~e~A~ 160 (361)
T 3khj_A 94 ----------GGLRVGAAIGVNE--IERAKLLVEAGVDVIVLDSAHGHSLNIIRTLKEIKSKM-NIDVIVGNVVTEEATK 160 (361)
T ss_dssp ----------TCCCCEEEECTTC--HHHHHHHHHTTCSEEEECCSCCSBHHHHHHHHHHHHHC-CCEEEEEEECSHHHHH
T ss_pred ----------cCceEEEEeCCCH--HHHHHHHHHcCcCeEEEeCCCCCcHHHHHHHHHHHHhc-CCcEEEccCCCHHHHH
Confidence 0001122222222 57788899999999999999999888899999999998 8999999999999999
Q ss_pred HHHHCCCCEEEE-----cccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECc
Q psy1056 387 ATLLNFIYQIEM-----IKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGS 460 (590)
Q Consensus 387 ~l~~~Gvd~i~v-----~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~ 460 (590)
.+.++|+|+|.| ++|+++. ..+||. +.+++.++++.+...++|||++|||+++.|++|||++|||+||+|+
T Consensus 161 ~l~~aGaD~I~VG~~~Gs~~~tr~---~~g~g~p~~~~i~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~vGs 237 (361)
T 3khj_A 161 ELIENGADGIKVGIGPGSICTTRI---VAGVGVPQITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMIGS 237 (361)
T ss_dssp HHHHTTCSEEEECSSCCTTCCHHH---HTCBCCCHHHHHHHHHHHHHHHTCCEEEESCCCSHHHHHHHHHHTCSEEEEST
T ss_pred HHHHcCcCEEEEecCCCcCCCccc---ccCCCCCcHHHHHHHHHHHhhcCCeEEEECCCCCHHHHHHHHHcCCCEEEECh
Confidence 999999999998 4677777 788988 8889999988776668999999999999999999999999999999
Q ss_pred cccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccc--cceeecccceeEEeeCCchhchHHHHHh
Q psy1056 461 LLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEM--DKLKVAQGVSGAIVDKGSVLRFLPYLQC 538 (590)
Q Consensus 461 ~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~--~~~~~~eg~~~~~~~~~~~~~~~~~~~~ 538 (590)
+|++++|||+++++.+|++||.||||||.+||.+ |+.+|||++. .+.+++||+++.|||||++.++|.++.+
T Consensus 238 ~~~~t~Esp~~~~~~~g~~~k~y~gm~s~~a~~~------~~~~~y~~~~~~~~~~~~eg~~~~v~~~g~~~~~~~~~~~ 311 (361)
T 3khj_A 238 ILAGTEESPGEKELIGDTVYKYYRGMGSVGAMKS------GSGDRYFQEKRPENKMVPEGIEGRVKYKGEMEGVVYQLVG 311 (361)
T ss_dssp TTTTBTTSSCEEEEETTEEEEEC---------------------------------------CEEECCBCHHHHHHHHHH
T ss_pred hhhcCCcCCcchhhcCCeEEEEeeccchHHHHhc------cchhhhhcccccccccCCCccEEeCCCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999964 6889999864 4578999999999999999999999999
Q ss_pred hhhhhCcccCcCcHHHHHHhhccCceEEEEEecCccccCCCCcccc
Q psy1056 539 GLKHGCQDIGAKSLSNLRAMMYSGELKFEKRTLCAQNEGSVHGLYS 584 (590)
Q Consensus 539 ~l~~~m~~~G~~~i~~l~~~~~~~~~~~~~~~~~~~~e~~~h~~~~ 584 (590)
+||++|+|+|++||+|||++ ++|+++|++|++||||||+..
T Consensus 312 gl~~~~~~~g~~~~~~~~~~-----~~~~~~~~~~~~e~~~h~~~~ 352 (361)
T 3khj_A 312 GLRSCMGYLGSASIEELWKK-----SSYVEITTSGLRESHVHDVEI 352 (361)
T ss_dssp HHHHHHHHTTCSSHHHHHHH-----CCEEECCC-------------
T ss_pred HHHHhhhhcCCccHHHHHhC-----CeEEEEccchhhcCCCCCccc
Confidence 99999999999999999998 999999999999999999873
|
| >3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-52 Score=433.14 Aligned_cols=237 Identities=26% Similarity=0.328 Sum_probs=199.6
Q ss_pred eccchhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccc--
Q psy1056 325 IGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFI-- 402 (590)
Q Consensus 325 i~~~~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~-- 402 (590)
++......+.++.++++|++++.+|.++|+...+.+.++++++.+|++|+++|++.|+++|+.|+++|||+|+|+++.
T Consensus 95 ~g~~~~~~e~~~~a~~aGvdvI~id~a~G~~~~~~e~I~~ir~~~~~~~Vi~G~V~T~e~A~~a~~aGaD~I~Vg~g~G~ 174 (361)
T 3r2g_A 95 VGCTENELQRAEALRDAGADFFCVDVAHAHAKYVGKTLKSLRQLLGSRCIMAGNVATYAGADYLASCGADIIKAGIGGGS 174 (361)
T ss_dssp ECSSHHHHHHHHHHHHTTCCEEEEECSCCSSHHHHHHHHHHHHHHTTCEEEEEEECSHHHHHHHHHTTCSEEEECCSSSS
T ss_pred cCCCHHHHHHHHHHHHcCCCEEEEeCCCCCcHhHHHHHHHHHHhcCCCeEEEcCcCCHHHHHHHHHcCCCEEEEcCCCCc
Confidence 344456678899999999999999999999888889999999998899999999999999999999999999985443
Q ss_pred ---cccCCCcccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCCCCCCCceEee-cC
Q psy1056 403 ---KKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFS-DG 477 (590)
Q Consensus 403 ---~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~~es~~~~~~~-~g 477 (590)
++. ..++|. +.+++.++.+.+ . |||++|||+++.|++|||++|||+||+|++|++++|||+++++. ||
T Consensus 175 ~~~tr~---~~g~g~p~l~aI~~~~~~~---~-PVIAdGGI~~~~di~kALa~GAd~V~iGr~f~~t~Espg~~~~~~~g 247 (361)
T 3r2g_A 175 VCSTRI---KTGFGVPMLTCIQDCSRAD---R-SIVADGGIKTSGDIVKALAFGADFVMIGGMLAGSAPTPGEVFQKDDG 247 (361)
T ss_dssp CHHHHH---HHCCCCCHHHHHHHHTTSS---S-EEEEESCCCSHHHHHHHHHTTCSEEEESGGGTTBTTSSSCEEECTTS
T ss_pred Cccccc---cCCccHHHHHHHHHHHHhC---C-CEEEECCCCCHHHHHHHHHcCCCEEEEChHHhCCccCCceeEEecCC
Confidence 333 456777 666666655332 2 99999999999999999999999999999999999999999999 99
Q ss_pred eeeeeeeccccHHHHhcccCCCcccchhhhccc-cceeecccceeEEeeCCchhchHHHHHhhhhhhCcccCcCcHHHHH
Q psy1056 478 VRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEM-DKLKVAQGVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLR 556 (590)
Q Consensus 478 ~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~-~~~~~~eg~~~~~~~~~~~~~~~~~~~~~l~~~m~~~G~~~i~~l~ 556 (590)
++||.||||||. +.+|||++. .+.+++||+++.|||+|++.++|.+|.++||++|+|+|++||+|||
T Consensus 248 ~~~k~y~Gm~s~------------~~~~~~~~~~~~~~~~eG~~~~v~~~g~~~~~~~~~~~glr~~m~y~G~~~i~~l~ 315 (361)
T 3r2g_A 248 SKVKRYRGMASR------------EAQEAFLGQMHEWKTAEGVATEVPFKENPDGIIADIIGGLRSGLTYAGADSISELQ 315 (361)
T ss_dssp CEEEEESCCHHH------------HHHHHHTTCCSTTCCSCCCCEEEECBCCHHHHHHHHHHHHHHHHHHTTCSSHHHHH
T ss_pred eEEEEEecCCCc------------chhhhhhccccccccCCcceeecCCCCCHHHHHHHHHHHHHHHhhhcCcccHHHHH
Confidence 999999999993 346778643 3445999999999999999999999999999999999999999999
Q ss_pred HhhccCceEEEEEecCccccCCCCccccc
Q psy1056 557 AMMYSGELKFEKRTLCAQNEGSVHGLYSY 585 (590)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~e~~~h~~~~~ 585 (590)
++ ++|+++|++|++||||||+..=
T Consensus 316 ~~-----~~~~~~~~~~~~e~~~h~~~~~ 339 (361)
T 3r2g_A 316 RK-----LNYVIVTQAGRIESLPHKLLEG 339 (361)
T ss_dssp HT-----CCEEECCSTTC-----------
T ss_pred hC-----CeEEEEccchhhccCCcccccc
Confidence 98 9999999999999999998743
|
| >1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-43 Score=374.27 Aligned_cols=385 Identities=33% Similarity=0.466 Sum_probs=251.2
Q ss_pred EeccccccccCCCCCCC-CccCCcccccccccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHH
Q psy1056 69 VTSRDVDFLENSANMDL-KIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQ 147 (590)
Q Consensus 69 vT~~Did~l~~~~~~~~-~~~~~~~~~l~~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~ 147 (590)
.+++ |+++.|+...+ ++++++++.+.+...++.|++.++|...++..++.+++..||+|+++.+.+
T Consensus 10 ~~fd--~v~l~p~~~~~~~~~vdlst~l~~g~~l~~Pii~Apm~~~~~~ela~a~a~aGglg~i~~~~s----------- 76 (404)
T 1eep_A 10 LTFD--DVSLIPRKSSVLPSEVSLKTQLTKNISLNIPFLSSAMDTVTESQMAIAIAKEGGIGIIHKNMS----------- 76 (404)
T ss_dssp CCGG--GEEECCCCCCSCGGGCCCCEESSSSCEESSSEEECCCTTTCSHHHHHHHHHHTSEEEECSSSC-----------
T ss_pred CCcc--cEEEccCCCCcCccccccceeccCCcccCCCEEeCCCCCCCCHHHHHHHHHCCCEEEECCCCC-----------
Confidence 5778 67777998886 688999999887788899999999999999999999999999999986554
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHhhhcCCCcccccccccchHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCe
Q psy1056 148 AGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEK 227 (590)
Q Consensus 148 ~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~im~~~~~~~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~ 227 (590)
.+.....+..++. +. . . +
T Consensus 77 --------------~e~~~~~~~~~~~-~~-----------------------------------~-------~----~- 94 (404)
T 1eep_A 77 --------------IEAQRKEIEKVKT-YK-----------------------------------F-------Q----K- 94 (404)
T ss_dssp --------------HHHHHHHHHHHHT-CC--------------------------------------------------
T ss_pred --------------HHHHHHHHHHHHh-hc-----------------------------------c-------C----C-
Confidence 2223333322222 00 0 0 1
Q ss_pred EEEEEecchhhccccccccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccC
Q psy1056 228 LLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRD 307 (590)
Q Consensus 228 lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~ 307 (590)
|+++.+|+.+.. . ++.+.++..++++ +.+++.....
T Consensus 95 --g~~~~~~~~~~~---------~-------~l~~~~~~~~~~~--------------------------~~~~~~~~~~ 130 (404)
T 1eep_A 95 --TINTNGDTNEQK---------P-------EIFTAKQHLEKSD--------------------------AYKNAEHKED 130 (404)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred --Cceecccccccc---------c-------cccccCCCCCHHH--------------------------HHHHHHHhhh
Confidence 455555543210 0 1111111111111 1222222223
Q ss_pred CCCCCcccCCceEEeEeeccchhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHH
Q psy1056 308 YPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRA 387 (590)
Q Consensus 308 ~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~ 387 (590)
++...++..+++.++++++......+.+..++++|++++.++.++|++....+.++++++.+|++|++++++.+.++|+.
T Consensus 131 ~p~~~~~~~~~~~~~~~i~~~~~~~~~a~~~~~~G~d~i~i~~~~g~~~~~~e~i~~ir~~~~~~pviv~~v~~~~~a~~ 210 (404)
T 1eep_A 131 FPNACKDLNNKLRVGAAVSIDIDTIERVEELVKAHVDILVIDSAHGHSTRIIELIKKIKTKYPNLDLIAGNIVTKEAALD 210 (404)
T ss_dssp CTTCCBCTTSCBCCEEEECSCTTHHHHHHHHHHTTCSEEEECCSCCSSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHH
T ss_pred cchhhhhcccCceEEEEeCCChhHHHHHHHHHHCCCCEEEEeCCCCChHHHHHHHHHHHHHCCCCeEEEcCCCcHHHHHH
Confidence 33223334445556777776556677888899999999999888888888889999999999889999999999999999
Q ss_pred HHHCCCCEEEEcc-----cccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcc
Q psy1056 388 TLLNFIYQIEMIK-----FIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSL 461 (590)
Q Consensus 388 l~~~Gvd~i~v~~-----~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~ 461 (590)
+.++|+|+|.|+. ++++. ..+||. +...+.++.+.+...++|||++|||+++.|++||+++|||+|++|++
T Consensus 211 a~~~Gad~I~vg~~~G~~~~~~~---~~~~g~p~~~~l~~v~~~~~~~~ipVia~GGI~~~~d~~~ala~GAd~V~iG~~ 287 (404)
T 1eep_A 211 LISVGADCLKVGIGPGSICTTRI---VAGVGVPQITAICDVYEACNNTNICIIADGGIRFSGDVVKAIAAGADSVMIGNL 287 (404)
T ss_dssp HHTTTCSEEEECSSCSTTSHHHH---HHCCCCCHHHHHHHHHHHHTTSSCEEEEESCCCSHHHHHHHHHHTCSEEEECHH
T ss_pred HHhcCCCEEEECCCCCcCcCccc---cCCCCcchHHHHHHHHHHHhhcCceEEEECCCCCHHHHHHHHHcCCCHHhhCHH
Confidence 9999999998832 23333 456777 77788888887765689999999999999999999999999999999
Q ss_pred ccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhcc---ccceeecccceeEEeeCCchhchHHHHHh
Q psy1056 462 LAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNE---MDKLKVAQGVSGAIVDKGSVLRFLPYLQC 538 (590)
Q Consensus 462 l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~---~~~~~~~eg~~~~~~~~~~~~~~~~~~~~ 538 (590)
|+.+.|||++..+++|+.||.||||++.++|.+ |+.++|++. ..+.++++|+++.+|++|+|.++|++|..
T Consensus 288 ~l~~~e~~~~~~~~~g~~~k~~~g~~~~g~~~~------g~~~~~~~g~~~~~~~l~~~g~~~~v~~~~~v~~~~~~l~~ 361 (404)
T 1eep_A 288 FAGTKESPSEEIIYNGKKFKSYVGMGSISAMKR------GSKSRYFQLENNEPKKLVPEGIEGMVPYSGKLKDILTQLKG 361 (404)
T ss_dssp HHTBTTSSSCEEEETTEEEEC------------------------------------------CEECCBCHHHHHHHHHH
T ss_pred HhcCCCCCcchhhhCCeEEeecCCCCCHHHHhh------ccccchhcccccccccccCceeEEeccCCccHHHHHHHHHH
Confidence 999999999999999999999999999999875 566788762 12456799999999999999999999999
Q ss_pred hhhhhCcccCcCcHHHHHHhhccCceEEEEEecCccccCCCCcccccc
Q psy1056 539 GLKHGCQDIGAKSLSNLRAMMYSGELKFEKRTLCAQNEGSVHGLYSYE 586 (590)
Q Consensus 539 ~l~~~m~~~G~~~i~~l~~~~~~~~~~~~~~~~~~~~e~~~h~~~~~~ 586 (590)
+|+++|+|+|+++++||++. ..|+++|+++++||||||+++|+
T Consensus 362 el~~~m~~~G~~~i~~l~~~-----~~~~~~~~~~~~e~~~~~~~~~~ 404 (404)
T 1eep_A 362 GLMSGMGYLGAATISDLKIN-----SKFVKISHSSLKESHPHDVFSIT 404 (404)
T ss_dssp HHHHHHHHHTCSSHHHHHHS-----CCEEECCCC--------------
T ss_pred HHHHHHHHhCCCCHHHHhhc-----CcEEEEchhhhccCcCceeeecC
Confidence 99999999999999999998 89999999999999999999874
|
| >2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-42 Score=355.99 Aligned_cols=223 Identities=28% Similarity=0.379 Sum_probs=199.7
Q ss_pred HHHHHHHHHHc--CCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcc-----ccc
Q psy1056 331 DKNRLKLLSQA--GVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIK-----FIK 403 (590)
Q Consensus 331 ~~e~~~~li~~--gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~-----~~~ 403 (590)
..+.++.+++. |++++.++.++|+...+.+.++++++.+|++|+++|++.|.++|+++.++|||+|+|+. |++
T Consensus 119 ~~~~~~~l~~~~~g~~~i~i~~~~g~~~~~~~~i~~lr~~~~~~~vi~g~v~t~e~A~~a~~aGaD~I~v~~g~G~~~~~ 198 (351)
T 2c6q_A 119 DFEQLEQILEAIPQVKYICLDVANGYSEHFVEFVKDVRKRFPQHTIMAGNVVTGEMVEELILSGADIIKVGIGPGSVCTT 198 (351)
T ss_dssp HHHHHHHHHHHCTTCCEEEEECSCTTBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHTTCSEEEECSSCSTTBCH
T ss_pred HHHHHHHHHhccCCCCEEEEEecCCCcHHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHhCCCEEEECCCCCcCcCc
Confidence 34567777776 89999999888888888899999999998899999999999999999999999999854 334
Q ss_pred ccCCCcccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCCCCCCCceEeecCeeeee
Q psy1056 404 KEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKK 482 (590)
Q Consensus 404 ~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~~es~~~~~~~~g~~~k~ 482 (590)
+. +.+||. +++++.++++.+...++|||++|||++|.|++|||+||||+|++|++|+.++|||++.++++|+.||.
T Consensus 199 r~---~~g~~~p~~~~l~~v~~~~~~~~ipvIa~GGI~~g~di~kAlalGA~~V~vG~~fl~~~Es~~~~~~~~g~~~k~ 275 (351)
T 2c6q_A 199 RK---KTGVGYPQLSAVMECADAAHGLKGHIISDGGCSCPGDVAKAFGAGADFVMLGGMLAGHSESGGELIERDGKKYKL 275 (351)
T ss_dssp HH---HHCBCCCHHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBTTSCSCEEEETTEEEEE
T ss_pred cc---cCCCCccHHHHHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCceeccHHHhcCccCcchhhhhcCeeeee
Confidence 66 788998 88999999888766689999999999999999999999999999999999999999999999999999
Q ss_pred eeccccHHHHhcccCCCcccchhhhccccceeecccceeEEeeCCchhchHHHHHhhhhhhCcccCcCcHHHHHHhhccC
Q psy1056 483 YRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRAMMYSG 562 (590)
Q Consensus 483 ~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~~~~~~~~~~~l~~~m~~~G~~~i~~l~~~~~~~ 562 (590)
||||||.+||... +|+.++|+ .+||+|+.+||+|++.++|++|.++||++|+|+||+||+||+++
T Consensus 276 ~~g~~~~~a~~~~----~g~~~~~~-------~~~g~~~~~~~~g~v~~~~~~l~~~l~~~m~~~G~~~i~~l~~~---- 340 (351)
T 2c6q_A 276 FYGMSSEMAMKKY----AGGVAEYR-------ASEGKTVEVPFKGDVEHTIRDILGGIRSTCTYVGAAKLKELSRR---- 340 (351)
T ss_dssp EECTTBHHHHHHH----SSSCCTTC-------CCCBCEEEEECCBCHHHHHHHHHHHHHHHHHHHTCSBGGGHHHH----
T ss_pred ccccccHhhhhcc----cccccccc-------cccceEEEeeccCcHHHHHHHHHHHHHHHHHHcCCCCHHHHhhC----
Confidence 9999999999753 35566665 46999999999999999999999999999999999999999998
Q ss_pred ceEEEEEecC
Q psy1056 563 ELKFEKRTLC 572 (590)
Q Consensus 563 ~~~~~~~~~~ 572 (590)
..|+++|++
T Consensus 341 -~~~v~~~~~ 349 (351)
T 2c6q_A 341 -TTFIRVTQQ 349 (351)
T ss_dssp -CCEEEC---
T ss_pred -CcEEEEecC
Confidence 899999975
|
| >1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-34 Score=296.48 Aligned_cols=224 Identities=27% Similarity=0.298 Sum_probs=166.8
Q ss_pred hhHHHHHHHHHHcC--CcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccC
Q psy1056 329 EADKNRLKLLSQAG--VDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEY 406 (590)
Q Consensus 329 ~~~~e~~~~li~~g--ad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~ 406 (590)
.+..+.++.+.+.+ ++++.++.++|+.....+.++++++.++..|++.|++.+.++|+++.++|||+|.++.+.++..
T Consensus 105 ~~~~~~a~~~~~~g~~~~~i~i~~~~G~~~~~~~~i~~lr~~~~~~~vi~G~v~s~e~A~~a~~aGad~Ivvs~hgG~~~ 184 (336)
T 1ypf_A 105 EDEYEFVQQLAAEHLTPEYITIDIAHGHSNAVINMIQHIKKHLPESFVIAGNVGTPEAVRELENAGADATKVGIGPGKVC 184 (336)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEEECSSCCSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHHTCSEEEECSSCSTTC
T ss_pred HHHHHHHHHHHhcCCCCCEEEEECCCCCcHHHHHHHHHHHHhCCCCEEEECCcCCHHHHHHHHHcCCCEEEEecCCCcee
Confidence 34456677888888 8999998888877778899999999997778888889999999999999999998866554431
Q ss_pred C--Ccccccc---chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCCCCCCCceEeecCeeee
Q psy1056 407 P--DMQVIGR---NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLK 481 (590)
Q Consensus 407 ~--~~~~~g~---~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~~es~~~~~~~~g~~~k 481 (590)
+ ...+||. +...+.++++ ..++|||++|||+++.|++|||++|||+|++|++|++|+|||++.++++|+.||
T Consensus 185 ~~~~~~~~g~~g~~~~~l~~v~~---~~~ipVIa~GGI~~g~Dv~kalalGAdaV~iGr~~l~t~Es~~~~~~~~g~~~k 261 (336)
T 1ypf_A 185 ITKIKTGFGTGGWQLAALRWCAK---AASKPIIADGGIRTNGDVAKSIRFGATMVMIGSLFAGHEESPGETIEKDGKLYK 261 (336)
T ss_dssp HHHHHHSCSSTTCHHHHHHHHHH---TCSSCEEEESCCCSTHHHHHHHHTTCSEEEESGGGTTCTTSSSCCC--------
T ss_pred ecccccCcCCchhHHHHHHHHHH---HcCCcEEEeCCCCCHHHHHHHHHcCCCEEEeChhhhccccCCCceeeeCCeEee
Confidence 0 0234443 3444555544 347999999999999999999999999999999999999999999999999999
Q ss_pred eeeccccHHHHhcccCCCcccchhhhccccceeecccceeEEeeCCchhchHHHHHhhhhhhCcccCcCcHHHHHHhhcc
Q psy1056 482 KYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRAMMYS 561 (590)
Q Consensus 482 ~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~~~~~~~~~~~l~~~m~~~G~~~i~~l~~~~~~ 561 (590)
.||||++.+++.. ...+||+++.+|++|++.+++++|..+||++|+++|+++++||++
T Consensus 262 ~~~g~~~~~~~g~------------------~~~~~g~~~~~~~~g~~~~~~~~l~~el~~~m~~~G~~~i~el~~---- 319 (336)
T 1ypf_A 262 EYFGSASEFQKGE------------------KKNVEGKKMFVEHKGSLEDTLIEMEQDLQSSISYAGGTKLDSIRT---- 319 (336)
T ss_dssp ---------------------------------CTTSCCSSSSCCCCHHHHHHHHHHHHHHHHHHTTSSBGGGGGG----
T ss_pred eeecccchhhccC------------------ccccccceeeecccccHHHHHHHHHHHHHHHHHHhCcccHHHhCc----
Confidence 9999999876321 135899999999999999999999999999999999999999975
Q ss_pred CceEEEEEecCccccCCC
Q psy1056 562 GELKFEKRTLCAQNEGSV 579 (590)
Q Consensus 562 ~~~~~~~~~~~~~~e~~~ 579 (590)
..|+++|.+++.|+..
T Consensus 320 --~~~~~~~~~~~~~~~~ 335 (336)
T 1ypf_A 320 --VDYVVVKNSIFNGDKV 335 (336)
T ss_dssp --CCEEECSCCC------
T ss_pred --CCEEEEccccccCCCC
Confidence 5899999999999753
|
| >2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.9e-24 Score=228.29 Aligned_cols=192 Identities=23% Similarity=0.248 Sum_probs=150.1
Q ss_pred HHHHHHHHHcCCcEEEEecCC-----CchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcc--cccc
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQ-----GNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIK--FIKK 404 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~-----G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~--~~~~ 404 (590)
.+.+..+.++|++++.++... +.+......+.++++.+ ++|+++|++.|+++|+.+.++|+|+|.|+. ++++
T Consensus 168 ~e~a~~~~~agad~i~i~~~~~~~~~~~~~~~~~~i~~l~~~~-~~pvi~ggi~t~e~a~~~~~~Gad~i~vg~Gg~~~~ 246 (393)
T 2qr6_A 168 REIAPIVIKAGADLLVIQGTLISAEHVNTGGEALNLKEFIGSL-DVPVIAGGVNDYTTALHMMRTGAVGIIVGGGENTNS 246 (393)
T ss_dssp HHHHHHHHHTTCSEEEEECSSCCSSCCCC-----CHHHHHHHC-SSCEEEECCCSHHHHHHHHTTTCSEEEESCCSCCHH
T ss_pred HHHHHHHHHCCCCEEEEeCCccccccCCCcccHHHHHHHHHhc-CCCEEECCcCCHHHHHHHHHcCCCEEEECCCccccc
Confidence 455666778899999887432 12222344578888888 799999999999999999999999999865 5666
Q ss_pred cCCCcccccc-chhHHHHHHHHH----hcCC---CcEEecCCCCCHHHHHHHHHcCCCEEEECccccCCCCCCCceEeec
Q psy1056 405 EYPDMQVIGR-NGTAVYRVAEYA----SRRG---VPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSD 476 (590)
Q Consensus 405 ~~~~~~~~g~-~~~~l~~~~~~~----~~~~---v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~~es~~~~~~~~ 476 (590)
. +.+||. +..++.++.+.+ .+.+ +|||++|||+++.|++|||++|||+|++|++|+.+.|||++.
T Consensus 247 ~---~~~~g~~~~~~l~~v~~~~~~~~~~~~~~~ipvia~GGI~~~~dv~kalalGA~~V~iG~~~l~~~es~~~~---- 319 (393)
T 2qr6_A 247 L---ALGMEVSMATAIADVAAARRDYLDETGGRYVHIIADGSIENSGDVVKAIACGADAVVLGSPLARAEEAAGKG---- 319 (393)
T ss_dssp H---HTSCCCCHHHHHHHHHHHHHHHHHHHTSCCCEEEECSSCCSHHHHHHHHHHTCSEEEECGGGGGSTTCTTTT----
T ss_pred c---cCCCCCChHHHHHHHHHHHHHhHhhcCCcceEEEEECCCCCHHHHHHHHHcCCCEEEECHHHHcCCCCCCce----
Confidence 6 778999 888998887762 2122 999999999999999999999999999999999999999985
Q ss_pred CeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecccceeEEee----CCchh----------chHHHHHhhhhh
Q psy1056 477 GVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVD----KGSVL----------RFLPYLQCGLKH 542 (590)
Q Consensus 477 g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~eg~~~~~~~----~~~~~----------~~~~~~~~~l~~ 542 (590)
.+|||++.+. .+++|++..+|. .+.+. +++++|..+||+
T Consensus 320 -----~~~g~~~~~~----------------------~~~~Gv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~el~~ 372 (393)
T 2qr6_A 320 -----YFWPAVAAHP----------------------RFPRGVVTESVDLDEAAPSLEQILHGPSTMPWGVENFEGGLKR 372 (393)
T ss_dssp -----EECCGGGGCS----------------------SSCCCCCEECC----CCCCHHHHHHCCCSCTTSSSCHHHHHHH
T ss_pred -----EEEecccCcc----------------------cCCCccccccccccccchhHHHHhccchhHHHHHHHHHHHHHH
Confidence 2588887532 256677665543 33333 444688999999
Q ss_pred hCcccCcCcHHHHHHh
Q psy1056 543 GCQDIGAKSLSNLRAM 558 (590)
Q Consensus 543 ~m~~~G~~~i~~l~~~ 558 (590)
+|+|+||+|++||++.
T Consensus 373 ~m~~~G~~~i~el~~~ 388 (393)
T 2qr6_A 373 ALAKCGYTDLKSFQKV 388 (393)
T ss_dssp HHHHHTCSBHHHHTTC
T ss_pred HHHHhCCCCHHHHhhc
Confidence 9999999999999865
|
| >4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B* | Back alignment and structure |
|---|
Probab=99.89 E-value=9.1e-24 Score=224.16 Aligned_cols=193 Identities=54% Similarity=0.893 Sum_probs=92.8
Q ss_pred CcCCCCCHHHHHHHHHhhhcccCccccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccccccccCC
Q psy1056 1 IIHHNCTPEYQANEVLKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENS 80 (590)
Q Consensus 1 ~~~~~~~~~~~~~~~~~vk~~~~~m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Did~l~~~ 80 (590)
|||||||+++|+++|++||+++++|..+|+|++|+.|+.||+++|.+++++++||+|++...++|+||+|.+|+++.
T Consensus 120 vIH~n~sie~Qa~~V~~VKr~e~g~i~dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~rf~--- 196 (556)
T 4af0_A 120 IIHHNCSAEEQAAMVRRVKKYENGFITDPLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQFQ--- 196 (556)
T ss_dssp EECCSSCHHHHHHHHHHHHHCCC---------------------------------------------------------
T ss_pred EEcCCCCHHHHHHHHHHHHhcccCccCCCeEcCCCCCHHHHHHHHHHhCCCccccccccCcCCEEEEEEeccccccc---
Confidence 69999999999999999999999999999999999999999999999999999999986556899999999987662
Q ss_pred CCCCCCccCCcccccccccccCCceeeCCCCCCchHHHHH-HHHH-------------cCC-------------------
Q psy1056 81 ANMDLKIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAI-AMAL-------------CGG------------------- 127 (590)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~piv~~~~~tv~~~~~~~-~~~~-------------~G~------------------- 127 (590)
+..+++.+.+ +. .++..+.++..+++..+ .-.+ .|.
T Consensus 197 ---------d~~~~V~evM-T~-~lvt~~~~~~leeA~~iL~~~kieklpVVd~~g~LvGlIT~kDi~k~~~~p~A~k~d 265 (556)
T 4af0_A 197 ---------DAETPIKSVM-TT-EVVTGSSPITLEKANSLLRETKKGKLPIVDSNGHLVSLVARSDLLKNQNYPYASKVP 265 (556)
T ss_dssp ------------------------------------------------------------------------CTTCCBCT
T ss_pred ---------ccceEhhhhc-cc-ceEEecCCCCHHHHHHHHHHccccceeEEccCCcEEEEEEechhhhhhhCCcchhcc
Confidence 2223333222 22 23333333222211111 0000 010
Q ss_pred ------eeEecCCCcchHHHHHHHHHcCCcEEEEcCCCCchHHHHHHHHHhhhcCCCcccccccccchHHHHHHHHHhcc
Q psy1056 128 ------IGAAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVD 201 (590)
Q Consensus 128 ------~gi~~~~~~d~~~~~~~l~~~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~im~~~~~~~~~~~~a~~~m~~ 201 (590)
.|..-....++.+|+..|+++|+|+|++|++||+.+.+.+.+++++..+|..+++..|+.+.+..+++++..||
T Consensus 266 ~~grL~VgAAVgv~~d~~eR~~aLv~AGvD~iviD~ahGhs~~v~~~i~~ik~~~p~~~viaGNVaT~e~a~~Li~aGAD 345 (556)
T 4af0_A 266 ESKQLYCGAAIGTRPGDKDRLKLLAEAGLDVVVLDSSQGNSVYQIEFIKWIKQTYPKIDVIAGNVVTREQAAQLIAAGAD 345 (556)
T ss_dssp TTCCBCCEEEECSSHHHHHHHHHHHHTTCCEEEECCSCCCSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHHTCS
T ss_pred hhhceeeEEEeccCccHHHHHHHHHhcCCcEEEEeccccccHHHHHHHHHHHhhCCcceEEeccccCHHHHHHHHHcCCC
Confidence 11111223467999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccc
Q psy1056 202 GLRVGS 207 (590)
Q Consensus 202 ~~~v~~ 207 (590)
++|||+
T Consensus 346 ~vkVGi 351 (556)
T 4af0_A 346 GLRIGM 351 (556)
T ss_dssp EEEECS
T ss_pred EEeecC
Confidence 999996
|
| >3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=5.5e-22 Score=200.03 Aligned_cols=244 Identities=21% Similarity=0.323 Sum_probs=160.7
Q ss_pred CccccCCEEECCCCCHHHHHHHHHHcCccceeeccC-CcccceeEEEEeccccccccCCCCC-CC-Cc--cC----Cccc
Q psy1056 23 HGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTEN-GKLGEKLLGIVTSRDVDFLENSANM-DL-KI--EK----DLSS 93 (590)
Q Consensus 23 ~~m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~-~~~~~~lvGivT~~Did~l~~~~~~-~~-~~--~~----~~~~ 93 (590)
.+|.++++++++++|+.+|+++|.+++++++||+|+ + |+++|++|.+|+--++...+. .+ .. .. ....
T Consensus 8 ~i~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpV~d~~~---~~~~Givt~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (280)
T 3kh5_A 8 IAQNKKIVTVYPTTTIRKALMTMNENKYRRLPVVNAGN---NKVVGIITSMDIVDFMGGGSKYNLIREKHERNFLAAINE 84 (280)
T ss_dssp TSCCSCCCCBCTTSBHHHHHHHHHHHCCCEEEEECTTT---CBEEEEEEHHHHHHHTTTSGGGHHHHTTSTTCHHHHTTS
T ss_pred HhcCCCcEEECCCCcHHHHHHHHHhCCCcEeeEEECCC---CeEEEEEEHHHHHHHhcccchhhhhhhccccchhHHhhh
Confidence 468889999999999999999999999999999996 4 799999999964222111100 00 00 00 0122
Q ss_pred ccccccccCCceeeCCCCCCchHHHHHHHHHc--CCeeEecCCCcchHHHHHHHHHcCCcEEEEcCCCCchHHHHHHHHH
Q psy1056 94 PLTKKITLAAPLVSSPMDTVTESDMAIAMALC--GGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKY 171 (590)
Q Consensus 94 ~l~~~~~~~~piv~~~~~tv~~~~~~~~~~~~--G~~gi~~~~~~d~~~~~~~l~~~~~dvv~~~~~~~~~~~~~~~v~~ 171 (590)
++.+ ++.+.++...+..++.+ ... .+... +.+.++..+.. ++.+- ........+..
T Consensus 85 ~v~~-im~~~~~~v~~~~~~~~-a~~-~~~~~~~~~~~Vvd~~~~---------------~~Giv----t~~dl~~~~~~ 142 (280)
T 3kh5_A 85 PVRE-IMEENVITLKENADIDE-AIE-TFLTKNVGGAPIVNDENQ---------------LISLI----TERDVIRALLD 142 (280)
T ss_dssp BGGG-TSBCSCCCEETTCBHHH-HHH-HHHHTTCSEEEEECTTCB---------------EEEEE----EHHHHHHHHGG
T ss_pred hHHH-hcCCCCEEECCCCCHHH-HHH-HHHhCCCCEEEEEcCCCE---------------EEEEE----EHHHHHHHHhh
Confidence 3332 33332322222223222 221 12222 22333322110 00000 01111111111
Q ss_pred -hhhcCCCcccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhccccc----
Q psy1056 172 -IKKEYPDMQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENS---- 243 (590)
Q Consensus 172 -vk~~~~~~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~~---- 243 (590)
.....+..++|..++.+ ++++.++++.| .+++++.+||++ +|+++|++|.+|+......
T Consensus 143 ~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~---------~~~~~~~~~Vv~----~~~~~Givt~~dl~~~~~~~~~~ 209 (280)
T 3kh5_A 143 KIDENEVIDDYITRDVIVATPGERLKDVARTM---------VRNGFRRLPVVS----EGRLVGIITSTDFIKLLGSDWAF 209 (280)
T ss_dssp GSCTTCBSGGGCBCSCCCBCTTCBHHHHHHHH---------HHHTCSEEEEEE----TTEEEEEEEHHHHHHHHTSHHHH
T ss_pred cCCCCCCHHHHhCCCCeEECCCCcHHHHHHHH---------HHcCCCEEEEEE----CCEEEEEEEHHHHHHHHhhhhhh
Confidence 11112445688766655 88999999999 999999999995 4999999999999722111
Q ss_pred ---------cccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccccc
Q psy1056 244 ---------ANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSR 306 (590)
Q Consensus 244 ---------~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~ 306 (590)
.....+++++|++ +++++++++++.+|++.|.+++++++||+|++|+++|+||.+|+++.+
T Consensus 210 ~~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~~~Givt~~dil~~l 279 (280)
T 3kh5_A 210 NHMQTGNVREITNVRMEEIMKR--DVITAKEGDKLKKIAEIMVTNDIGALPVVDENLRIKGIITEKDVLKYF 279 (280)
T ss_dssp HHHHSCCTHHHHHCBHHHHSBS--SCCCBCTTCBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHHHHGGGG
T ss_pred hhhcccchhhhhCCcHHHHhcC--CCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCeEEEEEeHHHHHHhh
Confidence 1135789999998 999999999999999999999999999999999999999999999864
|
| >2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.8e-21 Score=196.66 Aligned_cols=237 Identities=22% Similarity=0.267 Sum_probs=148.2
Q ss_pred hhhcccCccccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccccccccCCCCCCCCccCCcccccc
Q psy1056 17 KVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKDLSSPLT 96 (590)
Q Consensus 17 ~vk~~~~~m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Did~l~~~~~~~~~~~~~~~~~l~ 96 (590)
+|+++ |+++++++++++|+.+|+++|.+++++++||+|++ |+++|++|.+ |++..+. ..++.
T Consensus 2 ~v~~i---m~~~~~~v~~~~~~~~a~~~~~~~~~~~~pV~d~~---~~~~Giv~~~--dl~~~~~----------~~~v~ 63 (282)
T 2yzq_A 2 RVKTI---MTQNPVTITLPATRNYALELFKKYKVRSFPVVNKE---GKLVGIISVK--RILVNPD----------EEQLA 63 (282)
T ss_dssp BHHHH---SEESCCCEESSCC------------CCEEEEECTT---CCEEEEEESS--CC--------------------
T ss_pred chHHh---ccCCCeEECCCCcHHHHHHHHHHcCCCeEEEEcCC---CcEEEEEEHH--HHHhhhc----------cCCHH
Confidence 34555 99999999999999999999999999999999965 7999999999 4442211 11222
Q ss_pred cccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHHcCCcEEEEcCCCCchHHHHHHHH-Hhh--
Q psy1056 97 KKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIK-YIK-- 173 (590)
Q Consensus 97 ~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~~~~dvv~~~~~~~~~~~~~~~v~-~vk-- 173 (590)
+ ++...++...+.+++.+....+.-...+.+.++..+.. ++ |. ....+.++ .+.
T Consensus 64 ~-~m~~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~~~---------------~~------Gi-it~~di~~~~~~~~ 120 (282)
T 2yzq_A 64 M-LVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGK---------------PV------GI-LTVGDIIRRYFAKS 120 (282)
T ss_dssp C-CCBSCCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSC---------------EE------EE-EEHHHHHHHTTTTC
T ss_pred H-HcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCE---------------EE------EE-EEHHHHHHHHHhcc
Confidence 2 22232333333333332222211112222333321100 00 10 01111112 111
Q ss_pred ---hcCCCcccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhh------ccc
Q psy1056 174 ---KEYPDMQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVD------FLE 241 (590)
Q Consensus 174 ---~~~~~~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~------~~~ 241 (590)
...+..++|..++.+ ++++.++++.| .+++++++||+++ +++++|++|.+|+. ...
T Consensus 121 ~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~---------~~~~~~~l~Vvd~---~~~~~Giit~~dl~~~~~~~~~~ 188 (282)
T 2yzq_A 121 EKYKGVEIEPYYQRYVSIVWEGTPLKAALKAL---------LLSNSMALPVVDS---EGNLVGIVDETDLLRDSEIVRIM 188 (282)
T ss_dssp SGGGGCBSTTTSBSCCCCEETTSBHHHHHHHH---------HTCSSSEEEEECT---TSCEEEEEEGGGGGGCGGGCC--
T ss_pred CCcccCcHHHHhCCCCEEECCCCCHHHHHHHH---------HHcCCcEEEEEcC---CCeEEEEEEHHHHhhhhhhhhhh
Confidence 113445688766655 88999999999 9999999999997 68999999999997 211
Q ss_pred c--------------------------ccccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEE
Q psy1056 242 N--------------------------SANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIA 295 (590)
Q Consensus 242 ~--------------------------~~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~G 295 (590)
. ......+++++|++ +++++++++++.+|+++|.+++++++||+|++|+++|
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvG 266 (282)
T 2yzq_A 189 KSTELAASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTR--DVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIG 266 (282)
T ss_dssp ------------------------------CCCBGGGTCBS--SCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTTEEEE
T ss_pred ccchhhhhhhhhhhcccchHHHHhHhhhhhccCCHHHhcCC--CCceeCCCCCHHHHHHHHHHcCcceeEEECCCCCEEE
Confidence 0 11235789999998 9999999999999999999999999999998899999
Q ss_pred EEeecccccccCC
Q psy1056 296 LIARTDLKKSRDY 308 (590)
Q Consensus 296 iit~~dll~~~~~ 308 (590)
+||++|+++....
T Consensus 267 iit~~Dil~~~~~ 279 (282)
T 2yzq_A 267 LIRDFDLLKVLVK 279 (282)
T ss_dssp EEEHHHHGGGGCC
T ss_pred EEeHHHHHHHHHh
Confidence 9999999987653
|
| >3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-21 Score=199.23 Aligned_cols=238 Identities=16% Similarity=0.212 Sum_probs=176.5
Q ss_pred hhhcccCccccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccccccccCCCCCCCCccCCcccccc
Q psy1056 17 KVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKDLSSPLT 96 (590)
Q Consensus 17 ~vk~~~~~m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Did~l~~~~~~~~~~~~~~~~~l~ 96 (590)
+|++. |+++++++++++|+.+|+++|.+++++++||+| + +++|++|.+|+.-.+...
T Consensus 21 ~V~di---m~~~~~~v~~~~~v~~a~~~m~~~~~~~~~V~d-~----~l~GivT~~Di~~~~~~~--------------- 77 (296)
T 3ddj_A 21 NIETL---MIKNPPILSKEDRLGSAFKKINEGGIGRIIVAN-E----KIEGLLTTRDLLSTVESY--------------- 77 (296)
T ss_dssp SGGGT---CEESCCEECTTSBHHHHHHHTTGGGCCEEEEES-S----SEEEEEEHHHHHGGGTTC---------------
T ss_pred CHHHh---ccCCCcEECCCccHHHHHHHHHHCCCceEEEEC-C----eEEEEEeHHHHHHHhccc---------------
Confidence 56666 999999999999999999999999999999999 6 999999999532211000
Q ss_pred cccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHHcCCcEEEEcCCCCchHHHHHHHHHhhhcC
Q psy1056 97 KKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEY 176 (590)
Q Consensus 97 ~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~~~~dvv~~~~~~~~~~~~~~~v~~vk~~~ 176 (590)
.+. ... ....... .. .
T Consensus 78 ------~~~-----~~~------------------------------------------------~~~~~~~----~~-~ 93 (296)
T 3ddj_A 78 ------CKD-----SCS------------------------------------------------QGDLYHI----ST-T 93 (296)
T ss_dssp ------C--------CC------------------------------------------------HHHHHHH----HT-S
T ss_pred ------ccc-----ccc------------------------------------------------chhhHHH----hc-c
Confidence 000 000 0000000 01 2
Q ss_pred CCcccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhccccccccccchhhc
Q psy1056 177 PDMQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKV 253 (590)
Q Consensus 177 ~~~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~~~~~~~~V~~i 253 (590)
+..++|+.++.+ ++++.++++.| .+++++++||+|+ +++++|++|.+|+...........++.++
T Consensus 94 ~v~~im~~~~~~v~~~~~~~~a~~~m---------~~~~~~~lpVvd~---~~~lvGivt~~dl~~~~~~~~~~~~v~~~ 161 (296)
T 3ddj_A 94 PIIDYMTPNPVTVYNTSDEFTAINIM---------VTRNFGSLPVVDI---NDKPVGIVTEREFLLLYKDLDEIFPVKVF 161 (296)
T ss_dssp BGGGTSEESCCCEETTSCHHHHHHHH---------HHHTCSEEEEECT---TSCEEEEEEHHHHGGGGGGSCCCCBHHHH
T ss_pred cHHHhccCCCEEEcCCCCHHHHHHHH---------HHcCCCEEEEEcC---CCcEEEEEeHHHHHHhhhcccccccHHHh
Confidence 334578776655 88999999999 9999999999988 69999999999998433322345799999
Q ss_pred cccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCC-----------CCCCcccCCceEEe
Q psy1056 254 MTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDY-----------PDSSKDENNQLIVG 322 (590)
Q Consensus 254 m~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~-----------~~~~~d~~~~l~v~ 322 (590)
|++ +++++++++++.++++.|.+++++.+||+|++|+++|+||.+|+++.... .....+....- .
T Consensus 162 m~~--~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~v~~~m~~~--~ 237 (296)
T 3ddj_A 162 MST--KVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVVKDVMVTN--L 237 (296)
T ss_dssp SBC--SCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHHHHTCTHHHHTCBHHHHSBCC--C
T ss_pred hcC--CCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHHHHhhcChhhhcCcCHHHHhCCC--C
Confidence 998 99999999999999999999999999999999999999999999887531 11111111110 1
Q ss_pred EeeccchhHHHHHHHHHHcCCcEEEEecCCCchhh
Q psy1056 323 AAIGTREADKNRLKLLSQAGVDVVILDSSQGNSIY 357 (590)
Q Consensus 323 a~i~~~~~~~e~~~~li~~gad~i~V~~~~G~~~~ 357 (590)
..+....+..+.++.|.+.+...+.|...+|...|
T Consensus 238 ~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~~~G 272 (296)
T 3ddj_A 238 VTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRG 272 (296)
T ss_dssp CBCCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEE
T ss_pred eEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEE
Confidence 23445667788999999999988877665665544
|
| >3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.82 E-value=6.2e-21 Score=198.33 Aligned_cols=181 Identities=12% Similarity=0.139 Sum_probs=134.2
Q ss_pred EEeEeeccchhHHHHHHHHHHcCCcEEEEec--------CCCch--hhHHHHHHHHHHhCCCceEEeccc---cCcHHHH
Q psy1056 320 IVGAAIGTREADKNRLKLLSQAGVDVVILDS--------SQGNS--IYQIEMIKFIKKEYPDMQVIGGNV---LFGYQPR 386 (590)
Q Consensus 320 ~v~a~i~~~~~~~e~~~~li~~gad~i~V~~--------~~G~~--~~~l~~i~~i~~~~~~vpvi~g~v---~s~~~a~ 386 (590)
++.++++......+..+.+-..++|.+.++. ++|++ ..+++.++++++.+ ++||++|++ .++++|+
T Consensus 146 ~~ianig~~~~~e~~~~~ve~~~adal~ihln~~qe~~~p~Gd~~~~~~~~~I~~l~~~~-~~PVivK~vg~g~s~e~A~ 224 (365)
T 3sr7_A 146 LLATNIGLDKPYQAGLQAVRDLQPLFLQVHINLMQELLMPEGEREFRSWKKHLSDYAKKL-QLPFILKEVGFGMDVKTIQ 224 (365)
T ss_dssp CEEEEEETTSCHHHHHHHHHHHCCSCEEEEECHHHHHTSSSSCCCCHHHHHHHHHHHHHC-CSCEEEEECSSCCCHHHHH
T ss_pred cEEEEeCCCCCHHHHHHHHHhcCCCEEEEeccccccccCCCCCCcHHHHHHHHHHHHHhh-CCCEEEEECCCCCCHHHHH
Confidence 3456666544333444444456777766654 24655 35789999999998 799999999 6999999
Q ss_pred HHHHCCCCEEEEccccccc---------C--CCcccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCC
Q psy1056 387 ATLLNFIYQIEMIKFIKKE---------Y--PDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGAS 454 (590)
Q Consensus 387 ~l~~~Gvd~i~v~~~~~~~---------~--~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~ 454 (590)
.+.++|||+|+|+...++. . ..+.+||. ++.++.+++... .++|||++|||+|+.|++|||++|||
T Consensus 225 ~l~~aGad~I~V~g~GGt~~a~ie~~r~~~~~~~~~~g~pt~~~L~~v~~~~--~~ipvia~GGI~~g~Dv~KaLalGAd 302 (365)
T 3sr7_A 225 TAIDLGVKTVDISGRGGTSFAYIENRRGGNRSYLNQWGQTTAQVLLNAQPLM--DKVEILASGGIRHPLDIIKALVLGAK 302 (365)
T ss_dssp HHHHHTCCEEECCCBC--------------CGGGTTCSCBHHHHHHHHGGGT--TTSEEEECSSCCSHHHHHHHHHHTCS
T ss_pred HHHHcCCCEEEEeCCCCcccchhhccccccccccccccccHHHHHHHHHHhc--CCCeEEEeCCCCCHHHHHHHHHcCCC
Confidence 9999999999885443321 0 12457898 888887664321 25999999999999999999999999
Q ss_pred EEEECccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecccceeEEeeCCchhchHH
Q psy1056 455 TAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLP 534 (590)
Q Consensus 455 ~v~~g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~~~~~~ 534 (590)
+|++|++|..+ ++ . .| ...+.++++
T Consensus 303 aV~ig~~~l~a--------------------~~-----~-----------------------~G-------~~~v~~~l~ 327 (365)
T 3sr7_A 303 AVGLSRTMLEL--------------------VE-----Q-----------------------HS-------VHEVIAIVN 327 (365)
T ss_dssp EEEESHHHHHH--------------------HH-----H-----------------------SC-------HHHHHHHHH
T ss_pred EEEECHHHHHH--------------------HH-----h-----------------------cC-------hHHHHHHHH
Confidence 99999988311 00 0 01 113778899
Q ss_pred HHHhhhhhhCcccCcCcHHHHHHh
Q psy1056 535 YLQCGLKHGCQDIGAKSLSNLRAM 558 (590)
Q Consensus 535 ~~~~~l~~~m~~~G~~~i~~l~~~ 558 (590)
.|..+|+..|.++|++++.||++.
T Consensus 328 ~l~~eL~~~m~~~G~~si~eL~~~ 351 (365)
T 3sr7_A 328 GWKEDLRLIMCALNCQTIAELRNV 351 (365)
T ss_dssp HHHHHHHHHHHHTTCSSTGGGGGC
T ss_pred HHHHHHHHHHHHhCCcCHHHhccC
Confidence 999999999999999999999975
|
| >3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-20 Score=191.91 Aligned_cols=179 Identities=21% Similarity=0.257 Sum_probs=144.5
Q ss_pred ccCccccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccccccccCCCCCCCCccCCcccccccccc
Q psy1056 21 YKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKDLSSPLTKKIT 100 (590)
Q Consensus 21 ~~~~m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Did~l~~~~~~~~~~~~~~~~~l~~~~~ 100 (590)
++++|.++++++++++++.+|+++|.+++++++||+|++ ++++|++|.+| ++... ....
T Consensus 95 v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~---~~lvGivt~~d--l~~~~---------------~~~~- 153 (296)
T 3ddj_A 95 IIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDIN---DKPVGIVTERE--FLLLY---------------KDLD- 153 (296)
T ss_dssp GGGTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEECTT---SCEEEEEEHHH--HGGGG---------------GGSC-
T ss_pred HHHhccCCCEEEcCCCCHHHHHHHHHHcCCCEEEEEcCC---CcEEEEEeHHH--HHHhh---------------hccc-
Confidence 445599999999999999999999999999999999876 79999999994 43100 0000
Q ss_pred cCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHHcCCcEEEEcCCCCchHHHHHHHHHhhhcCCCcc
Q psy1056 101 LAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQ 180 (590)
Q Consensus 101 ~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~ 180 (590)
.. .+..+
T Consensus 154 ~~-------------------------------------------------------------------------~~v~~ 160 (296)
T 3ddj_A 154 EI-------------------------------------------------------------------------FPVKV 160 (296)
T ss_dssp CC-------------------------------------------------------------------------CBHHH
T ss_pred cc-------------------------------------------------------------------------ccHHH
Confidence 00 00011
Q ss_pred cccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhcccc--------ccccccc
Q psy1056 181 VIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLEN--------SANMDLK 249 (590)
Q Consensus 181 im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~--------~~~~~~~ 249 (590)
+|..++.+ ++++.++++.| .+++++.+||+|+ +++++|++|.+|+..... ......+
T Consensus 161 ~m~~~~~~v~~~~~l~~~~~~m---------~~~~~~~~~Vvd~---~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~ 228 (296)
T 3ddj_A 161 FMSTKVQTIYKEVRLDQAVKLM---------LRRGFRRLPVIDD---DNKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKV 228 (296)
T ss_dssp HSBCSCCCEETTSBHHHHHHHH---------HHHTCSEEEEECT---TSCEEEEEEHHHHHHHHHHHHHHTCTHHHHTCB
T ss_pred hhcCCCeEECCCCCHHHHHHHH---------HHcCCCEEEEEcC---CCEEEEEEEHHHHHHHHHHHHhhcChhhhcCcC
Confidence 44444333 78899999999 9999999999997 699999999999972211 1123578
Q ss_pred hhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccC
Q psy1056 250 IEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRD 307 (590)
Q Consensus 250 V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~ 307 (590)
+.++|++ +++++++++++.+|+++|.+++++++||+|++|+++|+||.+||++...
T Consensus 229 v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~Dil~~l~ 284 (296)
T 3ddj_A 229 VKDVMVT--NLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALH 284 (296)
T ss_dssp HHHHSBC--CCCBCCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred HHHHhCC--CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEcHHHHHHHHH
Confidence 9999998 9999999999999999999999999999999999999999999998754
|
| >3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-18 Score=190.20 Aligned_cols=270 Identities=21% Similarity=0.283 Sum_probs=188.8
Q ss_pred CcCCCCCHHHHHHHHHhhhcccCccccCCEEECCCCCHHHHHHHHHHcCccceeeccC--CcccceeEEEEecccccccc
Q psy1056 1 IIHHNCTPEYQANEVLKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTEN--GKLGEKLLGIVTSRDVDFLE 78 (590)
Q Consensus 1 ~~~~~~~~~~~~~~~~~vk~~~~~m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~--~~~~~~lvGivT~~Did~l~ 78 (590)
+||+||+++.|..++++||+.+++|..+|+++++++|+.+|+++|.+++++++||+|+ + ++++|+||.+|+.+.
T Consensus 95 vIh~~~~~~~q~~~V~~V~~~~~~m~~d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~~---~~lvGiVt~rDl~~~- 170 (511)
T 3usb_A 95 IIHKNMSIEQQAEQVDKVKRSESGVISDPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDE---RKLVGIITNRDMRFI- 170 (511)
T ss_dssp EECSSSCHHHHHHHHHHHHTSSSCSSSSCCCBCTTSBHHHHHHHHHHHCCSEEEEESCTTT---CBEEEEEEHHHHTTC-
T ss_pred eecccCCHHHHHHHHHHhhccccccccCCEEECCCCCHHHHHHHHHHcCCcEEEEEecCCC---CEEEEEEEehHhhhh-
Confidence 5899999999999999999999999999999999999999999999999999999997 5 799999999954321
Q ss_pred CCCCCCCCccCCcccccccccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHHcCCcEEEEcCC
Q psy1056 79 NSANMDLKIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDSS 158 (590)
Q Consensus 79 ~~~~~~~~~~~~~~~~l~~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~~~~dvv~~~~~ 158 (590)
.+...++.
T Consensus 171 ----------~~~~~~V~-------------------------------------------------------------- 178 (511)
T 3usb_A 171 ----------QDYSIKIS-------------------------------------------------------------- 178 (511)
T ss_dssp ----------CCSSSBHH--------------------------------------------------------------
T ss_pred ----------ccCCCcHH--------------------------------------------------------------
Confidence 01111111
Q ss_pred CCchHHHHHHHHHhhhcCCCcccccc-cccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEec
Q psy1056 159 QGNSIYQIEMIKYIKKEYPDMQVIGG-NVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTS 234 (590)
Q Consensus 159 ~~~~~~~~~~v~~vk~~~~~~~im~~-~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~ 234 (590)
++|+. ++.+ +.++.++++.| .++++..+||+|+ +++++|+||.
T Consensus 179 ---------------------~vM~~~~~vtv~~~~~l~eal~~m---------~~~~i~~lpVVDe---~g~l~GiIT~ 225 (511)
T 3usb_A 179 ---------------------DVMTKEQLITAPVGTTLSEAEKIL---------QKYKIEKLPLVDN---NGVLQGLITI 225 (511)
T ss_dssp ---------------------HHCCCCCCCCEETTCCHHHHHHHH---------HHHTCSEEEEECT---TSBEEEEEEH
T ss_pred ---------------------HhcccCCCEEECCCCCHHHHHHHH---------HHcCCCEEEEEeC---CCCEeeeccH
Confidence 13332 2222 67888999999 9999999999998 7999999999
Q ss_pred chhhccccccccccchhhccccCCCee--EEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCCCCCC
Q psy1056 235 RDVDFLENSANMDLKIEKVMTNVNEII--SAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSS 312 (590)
Q Consensus 235 ~Dl~~~~~~~~~~~~V~~im~~~~~~~--tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~~~~~ 312 (590)
+|+....... ..+++.+.+ .++ .+.......+.++.+.+.+.+.+.|-..++...+++ ++++...
T Consensus 226 ~Dil~~~~~p---~a~~D~~~r--l~V~aavg~~~d~~era~aLveaGvd~I~Id~a~g~~~~v~---~~i~~i~----- 292 (511)
T 3usb_A 226 KDIEKVIEFP---NSAKDKQGR--LLVGAAVGVTADAMTRIDALVKASVDAIVLDTAHGHSQGVI---DKVKEVR----- 292 (511)
T ss_dssp HHHHHHHHCT---TCCBCTTSC--BCCEEEECSSTTHHHHHHHHHHTTCSEEEEECSCTTSHHHH---HHHHHHH-----
T ss_pred HHHHHhhhcc---cchhhhccc--eeeeeeeeeccchHHHHHHHHhhccceEEecccccchhhhh---hHHHHHH-----
Confidence 9998332221 234455554 333 344444456667778889999887766555444333 2222221
Q ss_pred cccCC-ceEEeEeeccchhHHHHHHHHHHcCCcEEEEecCCCc----------hhhHHHHHHHH---HHhCCCceEEe-c
Q psy1056 313 KDENN-QLIVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGN----------SIYQIEMIKFI---KKEYPDMQVIG-G 377 (590)
Q Consensus 313 ~d~~~-~l~v~a~i~~~~~~~e~~~~li~~gad~i~V~~~~G~----------~~~~l~~i~~i---~~~~~~vpvi~-g 377 (590)
+..+ ..++..++. ..+.+..+.++|+|.+.+....|. ....+..+..+ .+.+ ++|+|+ |
T Consensus 293 -~~~~~~~vi~g~v~----t~e~a~~~~~aGad~i~vg~g~gsi~~~~~~~g~g~p~~~~l~~v~~~~~~~-~iPVIa~G 366 (511)
T 3usb_A 293 -AKYPSLNIIAGNVA----TAEATKALIEAGANVVKVGIGPGSICTTRVVAGVGVPQLTAVYDCATEARKH-GIPVIADG 366 (511)
T ss_dssp -HHCTTSEEEEEEEC----SHHHHHHHHHHTCSEEEECSSCSTTCCHHHHHCCCCCHHHHHHHHHHHHHTT-TCCEEEES
T ss_pred -HhCCCceEEeeeec----cHHHHHHHHHhCCCEEEECCCCccccccccccCCCCCcHHHHHHHHHHHHhC-CCcEEEeC
Confidence 1111 123333443 346678889999999987432221 01123333333 3334 689996 8
Q ss_pred cccCcHHHHHHHHCCCCEEEE
Q psy1056 378 NVLFGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 378 ~v~s~~~a~~l~~~Gvd~i~v 398 (590)
++.+.+++.++..+||+++-+
T Consensus 367 GI~~~~di~kala~GA~~V~v 387 (511)
T 3usb_A 367 GIKYSGDMVKALAAGAHVVML 387 (511)
T ss_dssp CCCSHHHHHHHHHTTCSEEEE
T ss_pred CCCCHHHHHHHHHhCchhhee
Confidence 888999999999999999955
|
| >3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C | Back alignment and structure |
|---|
Probab=99.79 E-value=2.1e-19 Score=185.43 Aligned_cols=191 Identities=14% Similarity=0.180 Sum_probs=141.7
Q ss_pred hhhcccCccccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccc--eeEEEEecccc-ccccCCCCCCCCccCCccc
Q psy1056 17 KVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGE--KLLGIVTSRDV-DFLENSANMDLKIEKDLSS 93 (590)
Q Consensus 17 ~vk~~~~~m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~--~lvGivT~~Di-d~l~~~~~~~~~~~~~~~~ 93 (590)
.+.++...|.++++++++++|+.+|++.|.+++++++||+|++..++ +++|++|.+|+ .++. ..
T Consensus 112 ~i~~~~~~~~~~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~~~l~Givt~~di~~~l~-~~------------ 178 (323)
T 3t4n_C 112 DIERALGVDQLDTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVA-LN------------ 178 (323)
T ss_dssp HHHHHTTC----CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHH-HH------------
T ss_pred HHHHHhCCCCCCceEeCCCCcHHHHHHHHHhCCeeEEEEEecCCCCCccceEEEecHHHHHHHHH-hc------------
Confidence 33344455899999999999999999999999999999999761111 29999999953 1110 00
Q ss_pred ccccccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHHcCCcEEEEcCCCCchHHHHHHHHHhh
Q psy1056 94 PLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIK 173 (590)
Q Consensus 94 ~l~~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~~~~dvv~~~~~~~~~~~~~~~v~~vk 173 (590)
........
T Consensus 179 -~~~~~~~~----------------------------------------------------------------------- 186 (323)
T 3t4n_C 179 -CRETHFLK----------------------------------------------------------------------- 186 (323)
T ss_dssp -CGGGGGCC-----------------------------------------------------------------------
T ss_pred -CCchhhhh-----------------------------------------------------------------------
Confidence 00000000
Q ss_pred hcCCCccc---ccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhcc-ccc--c
Q psy1056 174 KEYPDMQV---IGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFL-ENS--A 244 (590)
Q Consensus 174 ~~~~~~~i---m~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~-~~~--~ 244 (590)
.+..++ |..++.+ ++++.++++.| .+++++++||+|+ +|+++|+||.+|+... ... .
T Consensus 187 --~~v~~~~~~m~~~~~~v~~~~~~~~~~~~m---------~~~~~~~~pVvd~---~~~~~Giit~~dl~~~~~~~~~~ 252 (323)
T 3t4n_C 187 --IPIGDLNIITQDNMKSCQMTTPVIDVIQML---------TQGRVSSVPIIDE---NGYLINVYEAYDVLGLIKGGIYN 252 (323)
T ss_dssp --SBGGGTTCSBCTTCCCBCTTSBHHHHHHHH---------HHHTCSEEEEECT---TCBEEEEEETTHHHHHHHTTHHH
T ss_pred --CcHHHcCCCCCCCcEEECCCCcHHHHHHHH---------HHcCCCEEEEECC---CCeEEEEEeHHHHHHHHhhchhh
Confidence 011113 4444433 88999999999 9999999999998 7999999999999732 211 1
Q ss_pred ccccchhhccccCC----CeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccccc
Q psy1056 245 NMDLKIEKVMTNVN----EIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSR 306 (590)
Q Consensus 245 ~~~~~V~~im~~~~----~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~ 306 (590)
....+++++|++.. +++++++++++.+|+++|.+++++++||+|++|+++|+||.+|+++..
T Consensus 253 ~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~l~Giit~~Dil~~l 318 (323)
T 3t4n_C 253 DLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYI 318 (323)
T ss_dssp HTTSBHHHHGGGSCTTCCCCEEECTTCBHHHHHHHHHHSCCCEEEEECTTSBEEEEEEHHHHHHHH
T ss_pred hccCCHHHHHhhccccCCCCEEECCCCCHHHHHHHHHHhCCCEEEEECCCCcEEEEEEHHHHHHHH
Confidence 23578999999633 589999999999999999999999999999999999999999999875
|
| >2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* | Back alignment and structure |
|---|
Probab=99.79 E-value=9.3e-19 Score=181.24 Aligned_cols=253 Identities=13% Similarity=0.165 Sum_probs=158.7
Q ss_pred cccCcc--ccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEecccc-ccccCCCCCCC-CccCCcc-cc
Q psy1056 20 KYKHGF--IRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV-DFLENSANMDL-KIEKDLS-SP 94 (590)
Q Consensus 20 ~~~~~m--~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Di-d~l~~~~~~~~-~~~~~~~-~~ 94 (590)
.++++| .++++++++++|+.+|+++|.+++++++||+|++ .++++|++|.+|+ ..+. ...... ....++. ..
T Consensus 36 ~v~dim~p~~~v~~v~~~~~v~~a~~~~~~~~~~~~pV~d~~--~~~~vGivt~~Dll~~l~-~~~~~~~~~~~~l~~~~ 112 (330)
T 2v8q_E 36 RCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSK--KQSFVGMLTITDFINILH-RYYKSALVQIYELEEHK 112 (330)
T ss_dssp BGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETT--TTEEEEEEEHHHHHHHHH-HHHHHHTTTCCCGGGCB
T ss_pred cHhhhccCCCcEEEEeCCCcHHHHHHHHHHcCCcEEEEEeCC--CCeEEEEEEHHHHHHHHH-HHHhccccchhHHhhcc
Confidence 344559 8899999999999999999999999999999864 2589999999964 2111 000000 0000000 01
Q ss_pred cc------cccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecC-CCcchHHHHHHHHHcCCcEEEEcCCCCchHHHHH
Q psy1056 95 LT------KKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIG-TREADKYRLKLLSQAGVDVVILDSSQGNSIYQIE 167 (590)
Q Consensus 95 l~------~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~-~~~d~~~~~~~l~~~~~dvv~~~~~~~~~~~~~~ 167 (590)
+. ..++.+.++...+..++.+....+.-.....+.++.. +.. ++-+= .......
T Consensus 113 ~~~~~~~~~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~---------------~~Giv----t~~dl~~ 173 (330)
T 2v8q_E 113 IETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGN---------------TLYIL----THKRILK 173 (330)
T ss_dssp HHHHHHHHSSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCC---------------EEEEE----CHHHHHH
T ss_pred HHHHHHHHhhcccCCceEeCCCCCHHHHHHHHHHCCCCeEEEEeCCCCc---------------EEEEE----cHHHHHH
Confidence 11 1122333333333333333222221222233444432 110 00000 0111111
Q ss_pred HHHHhhhcCCCcc----------ccc-ccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEe
Q psy1056 168 MIKYIKKEYPDMQ----------VIG-GNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVT 233 (590)
Q Consensus 168 ~v~~vk~~~~~~~----------im~-~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt 233 (590)
.+..-....+..+ +|+ .++.+ ++++.++++.| .+++++++||+|+ +++++|+||
T Consensus 174 ~~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~v~~~~~l~~~~~~m---------~~~~~~~~~Vvd~---~~~l~Giit 241 (330)
T 2v8q_E 174 FLKLFITEFPKPEFMSKSLEELQIGTYANIAMVRTTTPVYVALGIF---------VQHRVSALPVVDE---KGRVVDIYS 241 (330)
T ss_dssp HHHHHSCSSSCCGGGGSBHHHHTCSBCSSCCCEETTCBHHHHHHHH---------HHHCCSEEEEECT---TSBEEEEEE
T ss_pred HHHHHhhccCchhhhcCCHHHhcccCcCCceEECCCCCHHHHHHHH---------HHcCCCeEEEECC---CCcEEEEEE
Confidence 1111000000001 232 34433 88999999999 9999999999997 699999999
Q ss_pred cchhhcccc-c--cccccchhhccc------cCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 234 SRDVDFLEN-S--ANMDLKIEKVMT------NVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 234 ~~Dl~~~~~-~--~~~~~~V~~im~------~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
.+|+..... . .....++.++|. + +++++++++++.+|+++|.+++++++||+|++|+++|+||..|+++
T Consensus 242 ~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~l~Giit~~Dil~ 319 (330)
T 2v8q_E 242 KFDVINLAAEKTYNNLDVSVTKALQHRSHYFE--GVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQ 319 (330)
T ss_dssp GGGTGGGGGSSCCCCCSSBHHHHGGGCCSCCC--SCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHH
T ss_pred HHHHHHHHhccccccccCcHHHHHhccccccC--CCeEECCCCcHHHHHHHHHHCCCcEEEEEcCCCcEEEEEeHHHHHH
Confidence 999983322 1 113578999994 6 8999999999999999999999999999999999999999999998
Q ss_pred ccCC
Q psy1056 305 SRDY 308 (590)
Q Consensus 305 ~~~~ 308 (590)
....
T Consensus 320 ~~~~ 323 (330)
T 2v8q_E 320 ALVL 323 (330)
T ss_dssp HHHS
T ss_pred HHHh
Confidence 7653
|
| >3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-18 Score=181.65 Aligned_cols=162 Identities=21% Similarity=0.243 Sum_probs=126.8
Q ss_pred HHHcCCcEEEEec------CCCchh---hHHHHHHHHHHhCCCceEEeccc---cCcHHHHHHHHCCCCEEEEccccc--
Q psy1056 338 LSQAGVDVVILDS------SQGNSI---YQIEMIKFIKKEYPDMQVIGGNV---LFGYQPRATLLNFIYQIEMIKFIK-- 403 (590)
Q Consensus 338 li~~gad~i~V~~------~~G~~~---~~l~~i~~i~~~~~~vpvi~g~v---~s~~~a~~l~~~Gvd~i~v~~~~~-- 403 (590)
++++++..++++. ++|++. ++.+.++++++.+ ++||++|++ .++++|+.+.++|||+|+|+.+.+
T Consensus 146 ~~~a~al~Ihln~~~~~~~p~g~~~~~~~~~~~i~~i~~~~-~vPVivK~vG~g~s~~~A~~l~~aGad~I~V~g~GGt~ 224 (368)
T 3vkj_A 146 MIEADAIAVHLNPAQEVFQPEGEPEYQIYALEKLRDISKEL-SVPIIVKESGNGISMETAKLLYSYGIKNFDTSGQGGTN 224 (368)
T ss_dssp HTTCSEEEEECCHHHHHHSSSCCCBCBTHHHHHHHHHHTTC-SSCEEEECSSSCCCHHHHHHHHHTTCCEEECCCBTSBC
T ss_pred HhcCCCeEEEecchhhhhCCCCCchhhHHHHHHHHHHHHHc-CCCEEEEeCCCCCCHHHHHHHHhCCCCEEEEeCCCCCc
Confidence 3345555555543 245553 4789999999988 799999988 699999999999999999855443
Q ss_pred -------ccC----------CCcccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCC
Q psy1056 404 -------KEY----------PDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGT 465 (590)
Q Consensus 404 -------~~~----------~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~ 465 (590)
|.. ..+.+||. +..++.++++.+. ++|||++|||+|+.|++|||++|||+|++|++|..+
T Consensus 225 ~~~iE~~R~~~~~~~~~~~~~~~~~~g~pt~~~l~~v~~~~~--~ipvia~GGI~~~~d~~kal~lGA~~v~ig~~~l~~ 302 (368)
T 3vkj_A 225 WIAIEMIRDIRRGNWKAESAKNFLDWGVPTAASIMEVRYSVP--DSFLVGSGGIRSGLDAAKAIALGADIAGMALPVLKS 302 (368)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHTTTCSCBHHHHHHHHHHHST--TCEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHH
T ss_pred ccchhhhhcccccccchhhccccccccccHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHHHcCCCEEEEcHHHHHH
Confidence 321 12568899 8888888887654 499999999999999999999999999999988311
Q ss_pred CCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecccceeEEeeCCchhchHHHHHhhhhhhCc
Q psy1056 466 SEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCGLKHGCQ 545 (590)
Q Consensus 466 ~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~~~~~~~~~~~l~~~m~ 545 (590)
+. +| ...+.++++.|..+|+..|+
T Consensus 303 -------------------------~~------------------------~G-------~~~v~~~l~~l~~eL~~~m~ 326 (368)
T 3vkj_A 303 -------------------------AI------------------------EG-------KESLEQFFRKIIFELKAAMM 326 (368)
T ss_dssp -------------------------HH------------------------HC-------HHHHHHHHHHHHHHHHHHHH
T ss_pred -------------------------Hh------------------------cC-------hHHHHHHHHHHHHHHHHHHH
Confidence 00 01 01277889999999999999
Q ss_pred ccCcCcHHHHHHh
Q psy1056 546 DIGAKSLSNLRAM 558 (590)
Q Consensus 546 ~~G~~~i~~l~~~ 558 (590)
++|++++.||++.
T Consensus 327 ~~G~~~i~el~~~ 339 (368)
T 3vkj_A 327 LTGSKDVDALKKT 339 (368)
T ss_dssp HTTCCBHHHHHTC
T ss_pred HhCCCCHHHhccC
Confidence 9999999999965
|
| >2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* | Back alignment and structure |
|---|
Probab=99.77 E-value=9e-19 Score=181.58 Aligned_cols=256 Identities=16% Similarity=0.200 Sum_probs=157.8
Q ss_pred cccCcccc--CCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEecccc-ccccCCCCCC--CCccC-Cc-c
Q psy1056 20 KYKHGFIR--DPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV-DFLENSANMD--LKIEK-DL-S 92 (590)
Q Consensus 20 ~~~~~m~~--~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Di-d~l~~~~~~~--~~~~~-~~-~ 92 (590)
.+.++|+. +++++++++|+.+|+++|.+++++++||+|++ .++++|++|.+|+ .++.. .+.. .+... .+ .
T Consensus 23 ~v~dim~~~~~vv~v~~~~tv~~a~~~~~~~~~~~~pV~d~~--~~~~vGiv~~~Dl~~~~~~-~~~~~~~~~~~~~~~~ 99 (334)
T 2qrd_G 23 TSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSE--ANKFAGLLTMADFVNVIKY-YYQSSSFPEAIAEIDK 99 (334)
T ss_dssp BGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETT--TTEEEEEECHHHHHHHHHH-HHHHCSCGGGGGGGGS
T ss_pred chhhhCCCCCCEEEEcCCCCHHHHHHHHHHcCCeEEEEEeCC--CCeEEEEEEHHHHHHHHHH-HhhccCCccHHHHHhh
Confidence 34455975 46799999999999999999999999999874 2699999999964 22210 0000 00000 00 1
Q ss_pred ccccc------ccccCCc--eeeCCCCCCchHHHHHHHHHcC--CeeEecCCCcchHHHHHHHHHcCCcEEEEcCCCCc-
Q psy1056 93 SPLTK------KITLAAP--LVSSPMDTVTESDMAIAMALCG--GIGAAIGTREADKYRLKLLSQAGVDVVILDSSQGN- 161 (590)
Q Consensus 93 ~~l~~------~~~~~~p--iv~~~~~tv~~~~~~~~~~~~G--~~gi~~~~~~d~~~~~~~l~~~~~dvv~~~~~~~~- 161 (590)
.++.. .++...+ +...+..++.+ .+. .|...+ .+.++......+ ...++ |.
T Consensus 100 ~~~~~i~~~l~~im~~~~~~~~v~~~~~~~~-a~~-~~~~~~~~~~~Vvd~~~~~~----------~~~~~------Giv 161 (334)
T 2qrd_G 100 FRLLGLREVERKIGAIPPETIYVHPMHSLMD-ACL-AMSKSRARRIPLIDVDGETG----------SEMIV------SVL 161 (334)
T ss_dssp CBHHHHHHHHHHHTCSCSSCCCBCTTSBHHH-HHH-HHHHSCCSEEEEEEEETTTT----------EEEEE------EEE
T ss_pred hchhhHHHHHHhhccCCCceeeeCCCCcHHH-HHH-HHHHCCceEEEEEeCCCCcC----------ccceE------EEe
Confidence 11111 1122222 22222222222 221 122222 222221100000 00000 10
Q ss_pred -hHHHHHHHHH-hh----hcCCCcc---cccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEE
Q psy1056 162 -SIYQIEMIKY-IK----KEYPDMQ---VIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLL 229 (590)
Q Consensus 162 -~~~~~~~v~~-vk----~~~~~~~---im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lv 229 (590)
.......+.. .. ...+..+ +|..++.+ ++++.++++.| .+++++++||+|+ +|+++
T Consensus 162 t~~dl~~~~~~~~~~~~~~~~~v~~l~~~m~~~~~~v~~~~~~~~~~~~m---------~~~~~~~~~Vvd~---~~~~~ 229 (334)
T 2qrd_G 162 TQYRILKFISMNCKETAMLRVPLNQMTIGTWSNLATASMETKVYDVIKML---------AEKNISAVPIVNS---EGTLL 229 (334)
T ss_dssp EHHHHHHHHHHHCGGGGGCCCBGGGSSCSBCSSCCCBCTTSBHHHHHHHH---------HHHTCSEEEEECT---TCBEE
T ss_pred eHHHHHHHHHhhccchhhhhCcHHHhCCcccCCceEECCCCcHHHHHHHH---------HHcCCcEEEEEcC---CCcEE
Confidence 1111111110 00 0123334 46666554 88999999999 9999999999997 68999
Q ss_pred EEEecchhhcc-ccc--cccccchhhccccC----CCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccc
Q psy1056 230 GIVTSRDVDFL-ENS--ANMDLKIEKVMTNV----NEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDL 302 (590)
Q Consensus 230 Givt~~Dl~~~-~~~--~~~~~~V~~im~~~----~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dl 302 (590)
|+||.+|+... ... .....++.++|++. .+++++++++++.+|+++|.+++++++||+|++|+++|+||..|+
T Consensus 230 Giit~~dl~~~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~Giit~~di 309 (334)
T 2qrd_G 230 NVYESVDVMHLIQDGDYSNLDLSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADI 309 (334)
T ss_dssp EEEETHHHHHHHTTSCGGGGGSBHHHHHTTCCTTCCCCCEECTTCBHHHHHHHHHHSCCCEEEEECTTCBEEEEEEHHHH
T ss_pred EEEEHHHHHHHhhccccccccCcHHHHHhcccccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHH
Confidence 99999999732 211 12467899999831 178999999999999999999999999999999999999999999
Q ss_pred ccccCC
Q psy1056 303 KKSRDY 308 (590)
Q Consensus 303 l~~~~~ 308 (590)
++....
T Consensus 310 l~~~~~ 315 (334)
T 2qrd_G 310 LNYIIY 315 (334)
T ss_dssp HHHHHS
T ss_pred HHHHHh
Confidence 987653
|
| >4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=99.76 E-value=6.1e-18 Score=183.97 Aligned_cols=270 Identities=23% Similarity=0.350 Sum_probs=163.5
Q ss_pred CcCCCCCHHHHHHHHHhhhcccCccccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccccccccCC
Q psy1056 1 IIHHNCTPEYQANEVLKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENS 80 (590)
Q Consensus 1 ~~~~~~~~~~~~~~~~~vk~~~~~m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Did~l~~~ 80 (590)
|||+||+++.|.+.+.+||+++++|+.+|+++++++|+.+|+++|.+++++++||+|++ ++++|+||.+|+.+..
T Consensus 71 vI~~n~s~e~qa~~V~~Vk~~~~~m~~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~~---~~lvGiVt~rDL~~~~-- 145 (496)
T 4fxs_A 71 FIHKNMSIEQQAAQVHQVKIFEAGVVTHPVTVRPEQTIADVMELTHYHGFAGFPVVTEN---NELVGIITGRDVRFVT-- 145 (496)
T ss_dssp EECSSSCHHHHHHHHHHHHHCCC--CBCCCCBCSSSBHHHHHHHHTSSCCCEEEEECSS---SBEEEEEEHHHHTTCC--
T ss_pred eecCCCCHHHHHHHHHhccccccccccCceEECCCCCHHHHHHHHHHcCCcEEEEEccC---CEEEEEEEHHHHhhcc--
Confidence 58999999999999999999999999999999999999999999999999999999976 8999999999543210
Q ss_pred CCCCCCccCCcccccccccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHHcCCcEEEEcCCCC
Q psy1056 81 ANMDLKIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQG 160 (590)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~~~~dvv~~~~~~~ 160 (590)
+...++.
T Consensus 146 ---------~~~~~v~---------------------------------------------------------------- 152 (496)
T 4fxs_A 146 ---------DLTKSVA---------------------------------------------------------------- 152 (496)
T ss_dssp ---------CTTSBGG----------------------------------------------------------------
T ss_pred ---------cCCCcHH----------------------------------------------------------------
Confidence 1111122
Q ss_pred chHHHHHHHHHhhhcCCCccccc-c-cccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecc
Q psy1056 161 NSIYQIEMIKYIKKEYPDMQVIG-G-NVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSR 235 (590)
Q Consensus 161 ~~~~~~~~v~~vk~~~~~~~im~-~-~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~ 235 (590)
++|+ . ++.+ +.++.++++.| .++++..+||+|+ +|+++|+||.+
T Consensus 153 -------------------diM~p~~~~vtv~~~~~l~ea~~~m---------~~~~i~~lpVVDe---~G~l~GiIT~~ 201 (496)
T 4fxs_A 153 -------------------AVMTPKERLATVKEGATGAEVQEKM---------HKARVEKILVVND---EFQLKGMITAK 201 (496)
T ss_dssp -------------------GTSEEGGGCCEEECC----CGGGTC---------C---CCCEEEECT---TSBCCEEECCC
T ss_pred -------------------HHhcCCCCCEEECCCCCHHHHHHHH---------HHcCCCEEEEEcC---CCCEEEeehHh
Confidence 1333 1 1212 56677777888 9999999999998 79999999999
Q ss_pred hhhccccccccccchhhccccCCCeeEEc-CCCCHHHHHHHHHhcCCCcceEEcC-CCceEEEEeecccccccCCCCCCc
Q psy1056 236 DVDFLENSANMDLKIEKVMTNVNEIISAQ-AGISLEEANVILEKSKKGKLPILND-KGELIALIARTDLKKSRDYPDSSK 313 (590)
Q Consensus 236 Dl~~~~~~~~~~~~V~~im~~~~~~~tv~-~~~~l~ea~~~m~~~~~~~lpVvd~-~g~l~Giit~~dll~~~~~~~~~~ 313 (590)
|+....... ...++.-.+..-...+. ..++++.+ +.+.+.+.+.+ ++|- .+...+. .+.++...
T Consensus 202 DIl~~~~~p---~a~~d~~grL~v~aavG~~~d~~~~a-~~l~~aG~d~I-~id~a~g~~~~~---~~~i~~ir------ 267 (496)
T 4fxs_A 202 DFHKAESKP---NACKDEQGRLRVGAAVGAAPGNEERV-KALVEAGVDVL-LIDSSHGHSEGV---LQRIRETR------ 267 (496)
T ss_dssp -----CCCT---TCCBCTTSCBCCEEECCSSSCCHHHH-HHHHHTTCSEE-EEECSCTTSHHH---HHHHHHHH------
T ss_pred HHHHhhccc---chhhhcccceeeeeeeccccchHHHH-HHHHhccCceE-EeccccccchHH---HHHHHHHH------
Confidence 998432211 01111111100011222 23445554 45556677754 4432 2211000 02222211
Q ss_pred ccCCce-EEeEeeccchhHHHHHHHHHHcCCcEEEEecCCCch----------hhHHHHHHHHHH---hCCCceEEe-cc
Q psy1056 314 DENNQL-IVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNS----------IYQIEMIKFIKK---EYPDMQVIG-GN 378 (590)
Q Consensus 314 d~~~~l-~v~a~i~~~~~~~e~~~~li~~gad~i~V~~~~G~~----------~~~l~~i~~i~~---~~~~vpvi~-g~ 378 (590)
+..+.. ++..++. ..+.++.+.++|+|++.+....|.. ......+..+.+ .+ ++|+|+ |+
T Consensus 268 ~~~p~~~Vi~g~v~----t~e~a~~l~~aGaD~I~Vg~g~Gs~~~tr~~~g~g~p~~~~i~~v~~~~~~~-~iPVIa~GG 342 (496)
T 4fxs_A 268 AAYPHLEIIGGNVA----TAEGARALIEAGVSAVKVGIGPGSICTTRIVTGVGVPQITAIADAAGVANEY-GIPVIADGG 342 (496)
T ss_dssp HHCTTCCEEEEEEC----SHHHHHHHHHHTCSEEEECSSCCTTBCHHHHHCCCCCHHHHHHHHHHHHGGG-TCCEEEESC
T ss_pred HHCCCceEEEcccC----cHHHHHHHHHhCCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHhccC-CCeEEEeCC
Confidence 111111 2222332 2466788899999999885322211 112344444444 23 689996 67
Q ss_pred ccCcHHHHHHHHCCCCEEEE
Q psy1056 379 VLFGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 379 v~s~~~a~~l~~~Gvd~i~v 398 (590)
+.+.+++.++..+|||++-+
T Consensus 343 I~~~~di~kala~GAd~V~i 362 (496)
T 4fxs_A 343 IRFSGDISKAIAAGASCVMV 362 (496)
T ss_dssp CCSHHHHHHHHHTTCSEEEE
T ss_pred CCCHHHHHHHHHcCCCeEEe
Confidence 88999999999999999955
|
| >2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=4.6e-18 Score=178.04 Aligned_cols=140 Identities=20% Similarity=0.197 Sum_probs=118.4
Q ss_pred HHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEec
Q psy1056 358 QIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIAD 436 (590)
Q Consensus 358 ~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~ 436 (590)
..+.++++++.+ ++|+++|++.+.++|+.+.++|+|+|.|+.+.+++ .+||. +...+.++.+.+.. ++|||++
T Consensus 217 ~~~~i~~lr~~~-~~PvivK~v~~~e~a~~a~~~Gad~I~vs~~ggr~----~~~g~~~~~~l~~v~~~v~~-~ipVia~ 290 (368)
T 2nli_A 217 SPRDIEEIAGHS-GLPVFVKGIQHPEDADMAIKRGASGIWVSNHGARQ----LYEAPGSFDTLPAIAERVNK-RVPIVFD 290 (368)
T ss_dssp CHHHHHHHHHHS-SSCEEEEEECSHHHHHHHHHTTCSEEEECCGGGTS----CSSCCCHHHHHHHHHHHHTT-SSCEEEC
T ss_pred hHHHHHHHHHHc-CCCEEEEcCCCHHHHHHHHHcCCCEEEEcCCCcCC----CCCCCChHHHHHHHHHHhCC-CCeEEEE
Confidence 356799999988 79999999999999999999999999998877655 35677 88888888877642 5999999
Q ss_pred CCCCCHHHHHHHHHcCCCEEEECccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeec
Q psy1056 437 GGVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVA 516 (590)
Q Consensus 437 GGi~~~~di~kalalGA~~v~~g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (590)
|||+++.|++|||++|||+|++|++|. |+++..+.
T Consensus 291 GGI~~g~D~~kalalGAd~V~iGr~~l--------------------~~~~~~G~------------------------- 325 (368)
T 2nli_A 291 SGVRRGEHVAKALASGADVVALGRPVL--------------------FGLALGGW------------------------- 325 (368)
T ss_dssp SSCCSHHHHHHHHHTTCSEEEECHHHH--------------------HHHHHHHH-------------------------
T ss_pred CCCCCHHHHHHHHHcCCCEEEECHHHH--------------------HHHHhcCh-------------------------
Confidence 999999999999999999999999883 33221111
Q ss_pred ccceeEEeeCCchhchHHHHHhhhhhhCcccCcCcHHHHHHh
Q psy1056 517 QGVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRAM 558 (590)
Q Consensus 517 eg~~~~~~~~~~~~~~~~~~~~~l~~~m~~~G~~~i~~l~~~ 558 (590)
.++.++++.|..+|+..|.++|++++.||++.
T Consensus 326 ----------~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~ 357 (368)
T 2nli_A 326 ----------QGAYSVLDYFQKDLTRVMQLTGSQNVEDLKGL 357 (368)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHHHTCSSHHHHHTC
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHhCCcCHHHhccc
Confidence 12778899999999999999999999999986
|
| >3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C | Back alignment and structure |
|---|
Probab=99.75 E-value=2.2e-18 Score=177.80 Aligned_cols=246 Identities=12% Similarity=0.118 Sum_probs=167.6
Q ss_pred Ccccc--CCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEecccc-ccccCCCCCCCCccCCccccccccc
Q psy1056 23 HGFIR--DPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV-DFLENSANMDLKIEKDLSSPLTKKI 99 (590)
Q Consensus 23 ~~m~~--~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Di-d~l~~~~~~~~~~~~~~~~~l~~~~ 99 (590)
++|.. +++++++++|+.+|+++|.+++++++||+|++ .++++|++|.+|+ +++.. . ........ .+
T Consensus 34 d~m~~~~~~v~v~~~~sv~~a~~~m~~~~~~~~pV~d~~--~~~lvGilt~~Dl~~~l~~--~------~~~~~~~~-~l 102 (323)
T 3t4n_C 34 DVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSK--TSRFAGLLTTTDFINVIQY--Y------FSNPDKFE-LV 102 (323)
T ss_dssp HHSCSEEEEEEEETTSBHHHHHHHHHHTTCSCEEEEETT--TTEEEEEECHHHHHHHHHH--H------HHCGGGGG-GG
T ss_pred hhCCCCCcEEEEcCCCcHHHHHHHHHHcCCceEEEEeCC--CCeEEEEEEHHHHHHHHHH--H------HcCcchhH-HH
Confidence 35765 45689999999999999999999999999975 2599999999953 22210 0 00000000 00
Q ss_pred ccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHHcCCcEEEEcCCCCchHHHHHHHHHhhhcCCCc
Q psy1056 100 TLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDM 179 (590)
Q Consensus 100 ~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~ 179 (590)
... ....+..+....
T Consensus 103 -----------~~~------------------------------------------------~~~~v~~i~~~~------ 117 (323)
T 3t4n_C 103 -----------DKL------------------------------------------------QLDGLKDIERAL------ 117 (323)
T ss_dssp -----------GGC------------------------------------------------BHHHHHHHHHHT------
T ss_pred -----------HHH------------------------------------------------HHHHHHHHHHHh------
Confidence 000 000111111111
Q ss_pred ccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCe-----EEEEEecchhh-ccc----ccccc
Q psy1056 180 QVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEK-----LLGIVTSRDVD-FLE----NSANM 246 (590)
Q Consensus 180 ~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~-----lvGivt~~Dl~-~~~----~~~~~ 246 (590)
.+|+.++.+ ++++.++++.| .+++++++||+++ ++. ++|++|.+|+. +.. .....
T Consensus 118 ~~~~~~~v~v~~~~~l~~a~~~m---------~~~~~~~lpVvd~---~~~~~~~~l~Givt~~di~~~l~~~~~~~~~~ 185 (323)
T 3t4n_C 118 GVDQLDTASIHPSRPLFEACLKM---------LESRSGRIPLIDQ---DEETHREIVVSVLTQYRILKFVALNCRETHFL 185 (323)
T ss_dssp TC----CCCBCTTSBHHHHHHHH---------HHHTCSEEEEEEE---CTTTCCEEEEEEEEHHHHHHHHHHHCGGGGGC
T ss_pred CCCCCCceEeCCCCcHHHHHHHH---------HhCCeeEEEEEec---CCCCCccceEEEecHHHHHHHHHhcCCchhhh
Confidence 145555444 88999999999 9999999999997 453 99999999997 211 12234
Q ss_pred ccchhhc---cccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCCCC------CCcccCC
Q psy1056 247 DLKIEKV---MTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPD------SSKDENN 317 (590)
Q Consensus 247 ~~~V~~i---m~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~~~------~~~d~~~ 317 (590)
..+++++ |++ +++++++++++.+|++.|.+++++.+||+|++|+++|+||.+|+++...... ...+...
T Consensus 186 ~~~v~~~~~~m~~--~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~v~~~m~ 263 (323)
T 3t4n_C 186 KIPIGDLNIITQD--NMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLSVGEALM 263 (323)
T ss_dssp CSBGGGTTCSBCT--TCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEETTHHHHHHHTTHHHHTTSBHHHHGG
T ss_pred hCcHHHcCCCCCC--CcEEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHHHHHHhhchhhhccCCHHHHHh
Confidence 5789999 988 9999999999999999999999999999999999999999999987643221 1111111
Q ss_pred ce----EEeEeeccchhHHHHHHHHHHcCCcEEEEecCCCchhhH
Q psy1056 318 QL----IVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQ 358 (590)
Q Consensus 318 ~l----~v~a~i~~~~~~~e~~~~li~~gad~i~V~~~~G~~~~~ 358 (590)
.. .-...+....+..+.++.|.+.+...+.|...+|...|+
T Consensus 264 ~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~l~Gi 308 (323)
T 3t4n_C 264 RRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGV 308 (323)
T ss_dssp GSCTTCCCCEEECTTCBHHHHHHHHHHSCCCEEEEECTTSBEEEE
T ss_pred hccccCCCCEEECCCCCHHHHHHHHHHhCCCEEEEECCCCcEEEE
Confidence 00 001234556678888999999999887776656655443
|
| >3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=8.3e-18 Score=173.21 Aligned_cols=138 Identities=19% Similarity=0.234 Sum_probs=116.2
Q ss_pred HHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecCC
Q psy1056 360 EMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADGG 438 (590)
Q Consensus 360 ~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GG 438 (590)
+.++++++.+ ++|+++|.+.+.++|+.+.++|+|+|.|+.+.+++ ..+ +. +...+.++.+.+.. ++|||++||
T Consensus 207 ~~i~~lr~~~-~~PvivK~v~~~e~A~~a~~~GaD~I~vsn~GG~~---~d~-~~~~~~~L~~i~~av~~-~ipVia~GG 280 (352)
T 3sgz_A 207 NDLSLLQSIT-RLPIILKGILTKEDAELAMKHNVQGIVVSNHGGRQ---LDE-VSASIDALREVVAAVKG-KIEVYMDGG 280 (352)
T ss_dssp HHHHHHHHHC-CSCEEEEEECSHHHHHHHHHTTCSEEEECCGGGTS---SCS-SCCHHHHHHHHHHHHTT-SSEEEEESS
T ss_pred HHHHHHHHhc-CCCEEEEecCcHHHHHHHHHcCCCEEEEeCCCCCc---cCC-CccHHHHHHHHHHHhCC-CCeEEEECC
Confidence 6799999998 79999999999999999999999999998887766 433 55 77788888776542 599999999
Q ss_pred CCCHHHHHHHHHcCCCEEEECccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeeccc
Q psy1056 439 VQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQG 518 (590)
Q Consensus 439 i~~~~di~kalalGA~~v~~g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~eg 518 (590)
|+++.|++|||++|||+|++|++|. |+++..+.
T Consensus 281 I~~g~Dv~kaLalGA~aV~iGr~~l--------------------~~l~~~G~--------------------------- 313 (352)
T 3sgz_A 281 VRTGTDVLKALALGARCIFLGRPIL--------------------WGLACKGE--------------------------- 313 (352)
T ss_dssp CCSHHHHHHHHHTTCSEEEESHHHH--------------------HHHHHHHH---------------------------
T ss_pred CCCHHHHHHHHHcCCCEEEECHHHH--------------------HHHHhcCc---------------------------
Confidence 9999999999999999999999883 33221111
Q ss_pred ceeEEeeCCchhchHHHHHhhhhhhCcccCcCcHHHHHHh
Q psy1056 519 VSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRAM 558 (590)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~l~~~m~~~G~~~i~~l~~~ 558 (590)
..+.++++.|..+|+..|.++|++++.||++.
T Consensus 314 --------~gv~~~l~~l~~el~~~m~~~G~~~i~el~~~ 345 (352)
T 3sgz_A 314 --------DGVKEVLDILTAELHRCMTLSGCQSVAEISPD 345 (352)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHTCSBGGGCCGG
T ss_pred --------HHHHHHHHHHHHHHHHHHHHhCCCcHHHHhhh
Confidence 12778899999999999999999999999865
|
| >4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.7e-17 Score=178.75 Aligned_cols=271 Identities=25% Similarity=0.340 Sum_probs=91.8
Q ss_pred CcCCCCCHHHHHHHHHhhhcccCccccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccccccccCC
Q psy1056 1 IIHHNCTPEYQANEVLKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENS 80 (590)
Q Consensus 1 ~~~~~~~~~~~~~~~~~vk~~~~~m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Did~l~~~ 80 (590)
+||+||+++.+..++.+||+++++|..+|+++++++|+.||+++|.+++++++||+|+ ++++|+||.+|+++..
T Consensus 70 vI~~~~~~e~~a~~v~~vk~~~~~m~~~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd~----g~lvGIVt~rDl~~~~-- 143 (490)
T 4avf_A 70 IIHKNMGIEQQAAEVRKVKKHETAIVRDPVTVTPSTKIIELLQMAREYGFSGFPVVEQ----GELVGIVTGRDLRVKP-- 143 (490)
T ss_dssp EECCSSCHHHHHHHHHHHHHCCC---------------------------------------------------------
T ss_pred cccCCCCHHHHHHHhhhhcccccCcccCceEeCCCCcHHHHHHHHHHhCCCEEEEEEC----CEEEEEEEhHHhhhcc--
Confidence 5899999999999999999999999999999999999999999999999999999994 6999999999543210
Q ss_pred CCCCCCccCCcccccccccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHHcCCcEEEEcCCCC
Q psy1056 81 ANMDLKIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQG 160 (590)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~~~~dvv~~~~~~~ 160 (590)
+...++.
T Consensus 144 ---------~~~~~V~---------------------------------------------------------------- 150 (490)
T 4avf_A 144 ---------NAGDTVA---------------------------------------------------------------- 150 (490)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------ccCCcHH----------------------------------------------------------------
Confidence 0000111
Q ss_pred chHHHHHHHHHhhhcCCCccccc-c-cccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecc
Q psy1056 161 NSIYQIEMIKYIKKEYPDMQVIG-G-NVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSR 235 (590)
Q Consensus 161 ~~~~~~~~v~~vk~~~~~~~im~-~-~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~ 235 (590)
++|+ . ++.+ ++++.++++.| .++++..+||+|+ +++++|+||.+
T Consensus 151 -------------------~vMtp~~~~vtv~~~~~l~ea~~~m---------~~~~i~~lpVVDe---~g~lvGiIT~~ 199 (490)
T 4avf_A 151 -------------------AIMTPKDKLVTAREGTPLEEMKAKL---------YENRIEKMLVVDE---NFYLRGLVTFR 199 (490)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------------------HHhccCCCCEEECCCCcHHHHHHHH---------HHcCCCEEEEEcC---CCcEEEEEehH
Confidence 1333 1 1222 77888999999 9999999999998 79999999999
Q ss_pred hhhccccccccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEc-CCCceEEEEeecccccccCCCCCCcc
Q psy1056 236 DVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILN-DKGELIALIARTDLKKSRDYPDSSKD 314 (590)
Q Consensus 236 Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd-~~g~l~Giit~~dll~~~~~~~~~~d 314 (590)
|+....... ...++.-.+..-...+.......+..+.+.+.+.+.+ ++| ..+...+ ..+.++... +
T Consensus 200 Dil~~~~~p---~a~kd~~grl~v~aavG~~~~~~~~a~~l~~aG~d~I-~id~a~g~~~~---~~~~v~~i~------~ 266 (490)
T 4avf_A 200 DIEKAKTYP---LASKDEQGRLRVGAAVGTGADTGERVAALVAAGVDVV-VVDTAHGHSKG---VIERVRWVK------Q 266 (490)
T ss_dssp -------CT---TCCBCTTSCBCCEEEECSSTTHHHHHHHHHHTTCSEE-EEECSCCSBHH---HHHHHHHHH------H
T ss_pred HhhhhccCc---chhhhccCcceeeeeeccccchHHHHHHHhhcccceE-EecccCCcchh---HHHHHHHHH------H
Confidence 998432211 0011111110011223333344455556667787754 443 2222100 012222211 1
Q ss_pred cCCc-eEEeEeeccchhHHHHHHHHHHcCCcEEEEecCCCch----------hhHHHHHHHHHHhC--CCceEEe-cccc
Q psy1056 315 ENNQ-LIVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNS----------IYQIEMIKFIKKEY--PDMQVIG-GNVL 380 (590)
Q Consensus 315 ~~~~-l~v~a~i~~~~~~~e~~~~li~~gad~i~V~~~~G~~----------~~~l~~i~~i~~~~--~~vpvi~-g~v~ 380 (590)
..+. .++..++. ..+.+..+.++|+|++.+-...|.. ...++.+..+.+.. .++|+|+ |++.
T Consensus 267 ~~p~~~Vi~g~v~----t~e~a~~l~~aGaD~I~vg~g~Gs~~~t~~~~g~g~p~~~~l~~v~~~~~~~~iPVIa~GGI~ 342 (490)
T 4avf_A 267 TFPDVQVIGGNIA----TAEAAKALAEAGADAVKVGIGPGSICTTRIVAGVGVPQISAIANVAAALEGTGVPLIADGGIR 342 (490)
T ss_dssp HCTTSEEEEEEEC----SHHHHHHHHHTTCSEEEECSSCSTTCHHHHHTCBCCCHHHHHHHHHHHHTTTTCCEEEESCCC
T ss_pred HCCCceEEEeeeC----cHHHHHHHHHcCCCEEEECCCCCcCCCccccCCCCccHHHHHHHHHHHhccCCCcEEEeCCCC
Confidence 1112 12222332 3466788999999999883222211 11345555555532 1689995 7788
Q ss_pred CcHHHHHHHHCCCCEEEE
Q psy1056 381 FGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 381 s~~~a~~l~~~Gvd~i~v 398 (590)
+.+++.++.++|||++-+
T Consensus 343 ~~~di~kal~~GAd~V~v 360 (490)
T 4avf_A 343 FSGDLAKAMVAGAYCVMM 360 (490)
T ss_dssp SHHHHHHHHHHTCSEEEE
T ss_pred CHHHHHHHHHcCCCeeee
Confidence 999999999999999966
|
| >4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus} | Back alignment and structure |
|---|
Probab=99.70 E-value=4.3e-17 Score=152.40 Aligned_cols=118 Identities=21% Similarity=0.264 Sum_probs=104.2
Q ss_pred CCCcccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhcccc----------
Q psy1056 176 YPDMQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLEN---------- 242 (590)
Q Consensus 176 ~~~~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~---------- 242 (590)
.+..++|+.++.+ ++++.+|++.| .+++++++||+|+ +|+++|+||.+|+.....
T Consensus 18 ~~V~diM~~~v~~v~~~~tl~~a~~~m---------~~~~~~~~pVvd~---~g~lvGiit~~Dll~~~~~~~~~~~~~~ 85 (170)
T 4esy_A 18 VPIRDILTSPVVTVREDDTLDAVAKTM---------LEHQIGCAPVVDQ---NGHLVGIITESDFLRGSIPFWIYEASEI 85 (170)
T ss_dssp SBGGGGCCSCCCCEETTSBHHHHHHHH---------HHTTCSEEEEECT---TSCEEEEEEGGGGGGGTCCTTHHHHHHH
T ss_pred CCHHHhcCCCCcEECCcCcHHHHHHHH---------HHcCCeEEEEEcC---CccEEEEEEHHHHHHHHhhccccchhhh
Confidence 7777899998877 99999999999 9999999999998 799999999999972211
Q ss_pred --------------ccccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCC
Q psy1056 243 --------------SANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDY 308 (590)
Q Consensus 243 --------------~~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~ 308 (590)
......+++++|++ +++++++++++.+|+++|.+++++++||+| +|+++|+||++||++.+..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~v~~im~~--~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd-~g~lvGivt~~Dil~~l~~ 162 (170)
T 4esy_A 86 LSRAIPAPEVEHLFETGRKLTASAVMTQ--PVVTAAPEDSVGSIADQMRRHGIHRIPVVQ-DGVPVGIVTRRDLLKLLLL 162 (170)
T ss_dssp HTTTSCHHHHHHHHHHHTTCBHHHHCBC--CSCCBCTTSBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHTTTSCC
T ss_pred hhhccchhhHHhhhccccccchhhhccc--CcccCCcchhHHHHHHHHHHcCCcEEEEEE-CCEEEEEEEHHHHHHHHHh
Confidence 01124689999999 999999999999999999999999999998 5999999999999998654
|
| >1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=3e-17 Score=179.29 Aligned_cols=276 Identities=19% Similarity=0.184 Sum_probs=96.8
Q ss_pred CcCCCCCHHHHHHHHHhhhcccCccccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccccccccCC
Q psy1056 1 IIHHNCTPEYQANEVLKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENS 80 (590)
Q Consensus 1 ~~~~~~~~~~~~~~~~~vk~~~~~m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Did~l~~~ 80 (590)
+||+|++++++...+.+|+..+.+|+++++++++++|+.+|+++|.+++++++||+|++...++++|+||.+|+....
T Consensus 79 ~I~~~~~~e~~~~~v~~V~~~e~gM~~~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~~~g~lvGiVt~~Dl~~~~-- 156 (503)
T 1me8_A 79 FIFGSQSIESQAAMVHAVKNFKAGFVVSDSNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLVTQRDYPIDL-- 156 (503)
T ss_dssp EECCSSCHHHHHHHHHHHHTTTC---------------------------------------------------------
T ss_pred eeeCCCCHHHHHHHHhhhhhcccCcccCCeEECCCCcHHHHHHHHHHcCceEEEEEECCCcCCeEEEEEEHHHHHhhh--
Confidence 589999999999999999999777999999999999999999999999999999998621115999999999432210
Q ss_pred CCCCCCccCCcccccccccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHHcCCcEEEEcCCCC
Q psy1056 81 ANMDLKIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQG 160 (590)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~~~~dvv~~~~~~~ 160 (590)
.+...
T Consensus 157 --------~~~~~------------------------------------------------------------------- 161 (503)
T 1me8_A 157 --------TQTET------------------------------------------------------------------- 161 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------ccccC-------------------------------------------------------------------
Confidence 00000
Q ss_pred chHHHHHHHHHhhhcCCCccccccc--ccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecc
Q psy1056 161 NSIYQIEMIKYIKKEYPDMQVIGGN--VVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSR 235 (590)
Q Consensus 161 ~~~~~~~~v~~vk~~~~~~~im~~~--~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~ 235 (590)
+..++|+.+ +.+ ++++.++++.| .+++++.+||+|+ +++++|+||.+
T Consensus 162 ----------------~V~diM~~~~~~~tv~~~~sl~ea~~~m---------~~~~i~~lpVVDe---~g~lvGiIT~~ 213 (503)
T 1me8_A 162 ----------------KVSDMMTPFSKLVTAHQDTKLSEANKII---------WEKKLNALPIIDD---DQHLRYIVFRK 213 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------------cHHHHhCCCCCCEEEcCCCcHHHHHHHH---------HHcCCCEEEEEcC---CCeEEEEEEec
Confidence 001144432 222 78899999999 9999999999998 79999999999
Q ss_pred hhhccccccc-cccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCCCCCCcc
Q psy1056 236 DVDFLENSAN-MDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKD 314 (590)
Q Consensus 236 Dl~~~~~~~~-~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~~~~~~d 314 (590)
|+........ ...+...+|. ...+.. ....+..+.|.+.+++.++|--.+|...|+++.-+.++...
T Consensus 214 Dil~~~~~~~~~~d~~~~l~v----~a~v~~-~~~~e~~~~l~e~gv~~l~Vd~~~g~~~~~~~~i~~lk~~~------- 281 (503)
T 1me8_A 214 DYDRSQVCHNELVDSQKRYLV----GAGINT-RDFRERVPALVEAGADVLCIDSSDGFSEWQKITIGWIREKY------- 281 (503)
T ss_dssp --------CCCCBCTTSCBCC----EEEECS-SSHHHHHHHHHHHTCSEEEECCSCCCSHHHHHHHHHHHHHH-------
T ss_pred HHHHhhhcccchhcccccccc----ccccCc-hhHHHHHHHHHhhhccceEEecccCcccchhhHHHHHHHhC-------
Confidence 9983221110 1111222222 123445 66667788899999987655334455555443333333211
Q ss_pred cC-CceEEeEeeccchhHHHHHHHHHHcCCcEEEEecCCCc----h------hhHHHHHHHHHHhC--------CCceEE
Q psy1056 315 EN-NQLIVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGN----S------IYQIEMIKFIKKEY--------PDMQVI 375 (590)
Q Consensus 315 ~~-~~l~v~a~i~~~~~~~e~~~~li~~gad~i~V~~~~G~----~------~~~l~~i~~i~~~~--------~~vpvi 375 (590)
.. .. ++..++. ..+.+..+.++|++++.+....|. + ...+..+..+.+.. .++|+|
T Consensus 282 ~~~~~-Vi~G~V~----t~~~a~~l~~aGad~I~Vg~~~g~~~~~r~~~~~g~p~~~~l~~v~~~~~~~~~~~~~~ipvi 356 (503)
T 1me8_A 282 GDKVK-VGAGNIV----DGEGFRYLADAGADFIKIGIGGGSICITREQKGIGRGQATAVIDVVAERNKYFEETGIYIPVC 356 (503)
T ss_dssp GGGSC-EEEEEEC----SHHHHHHHHHHTCSEEEECSSCSTTCCSTTTTCCCCCHHHHHHHHHHHHHHHHHHHSEECCEE
T ss_pred CCCce-Eeecccc----CHHHHHHHHHhCCCeEEecccCCcCcccccccCCCCchHHHHHHHHHHHHHHhhhcCCCceEE
Confidence 01 12 2222332 245677888999999988332221 1 11233333332221 148888
Q ss_pred e-ccccCcHHHHHHHHCCCCEEEE
Q psy1056 376 G-GNVLFGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 376 ~-g~v~s~~~a~~l~~~Gvd~i~v 398 (590)
+ |++.+..++.+++.+||+++-+
T Consensus 357 a~GGi~~~~di~kAlalGA~~V~i 380 (503)
T 1me8_A 357 SDGGIVYDYHMTLALAMGADFIML 380 (503)
T ss_dssp EESCCCSHHHHHHHHHTTCSEEEE
T ss_pred EeCCCCCHHHHHHHHHcCCCEEEE
Confidence 5 7888999999999999999966
|
| >1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.6e-17 Score=174.96 Aligned_cols=156 Identities=14% Similarity=0.187 Sum_probs=116.9
Q ss_pred HHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecC
Q psy1056 359 IEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADG 437 (590)
Q Consensus 359 l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~G 437 (590)
.+.++++++.+ ++|+++|++.+.++|+.+.++|+|+|.|+.+.++. + +||. +...+.++.+.+ +.|||++|
T Consensus 214 ~~~i~~i~~~~-~~Pv~vkgv~t~e~a~~a~~aGad~I~vs~~gg~~---~-d~~~~~~~~l~~v~~~~---~~pVia~G 285 (380)
T 1p4c_A 214 WEALRWLRDLW-PHKLLVKGLLSAEDADRCIAEGADGVILSNHGGRQ---L-DCAISPMEVLAQSVAKT---GKPVLIDS 285 (380)
T ss_dssp HHHHHHHHHHC-CSEEEEEEECCHHHHHHHHHTTCSEEEECCGGGTS---C-TTCCCGGGTHHHHHHHH---CSCEEECS
T ss_pred HHHHHHHHHhc-CCCEEEEecCcHHHHHHHHHcCCCEEEEcCCCCCc---C-CCCcCHHHHHHHHHHHc---CCeEEEEC
Confidence 57899999998 79999999999999999999999999997766554 3 4567 888888887665 35999999
Q ss_pred CCCCHHHHHHHHHcCCCEEEECccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecc
Q psy1056 438 GVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQ 517 (590)
Q Consensus 438 Gi~~~~di~kalalGA~~v~~g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~e 517 (590)
||+++.|++|+|++|||+|++|++|. +|++..+.
T Consensus 286 GI~~~~dv~kal~~GAdaV~iGr~~l--------------------~~~~~~g~-------------------------- 319 (380)
T 1p4c_A 286 GFRRGSDIVKALALGAEAVLLGRATL--------------------YGLAARGE-------------------------- 319 (380)
T ss_dssp SCCSHHHHHHHHHTTCSCEEESHHHH--------------------HHHHHHHH--------------------------
T ss_pred CCCCHHHHHHHHHhCCcHhhehHHHH--------------------HHHHhcCH--------------------------
Confidence 99999999999999999999999882 33211100
Q ss_pred cceeEEeeCCchhchHHHHHhhhhhhCcccCcCcHHHHHHhhccCceEEEEEecCccccCCCCcccccc
Q psy1056 518 GVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRAMMYSGELKFEKRTLCAQNEGSVHGLYSYE 586 (590)
Q Consensus 518 g~~~~~~~~~~~~~~~~~~~~~l~~~m~~~G~~~i~~l~~~~~~~~~~~~~~~~~~~~e~~~h~~~~~~ 586 (590)
.++.+.++.+..+|+..|.++|++++.||++.. . ..+++.|+++||+..+.
T Consensus 320 ---------~~v~~~~~~l~~el~~~m~~~G~~~i~el~~~~-------l--~~~g~~~~~~~d~~~~~ 370 (380)
T 1p4c_A 320 ---------TGVDEVLTLLKADIDRTLAQIGCPDITSLSPDY-------L--QNEGVTNTAPVDHLIGK 370 (380)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHTCCBGGGCCGGG-------E--EEC--------------
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHhCCCCHHHhccCe-------E--EecccccccCccccccc
Confidence 127788999999999999999999999999861 2 23577899999987553
|
| >2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.8e-17 Score=174.63 Aligned_cols=140 Identities=20% Similarity=0.243 Sum_probs=116.2
Q ss_pred HHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEec
Q psy1056 358 QIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIAD 436 (590)
Q Consensus 358 ~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~ 436 (590)
..+.++++++.+ ++|+++|++.+.++|+.+.++|+|+|.|+.+.+++ .+||. +...+.++.+.+.. ++|||++
T Consensus 240 ~~~~i~~lr~~~-~~PvivKgv~~~e~A~~a~~aGad~I~vs~~ggr~----~~~g~~~~~~l~~v~~av~~-~ipVia~ 313 (392)
T 2nzl_A 240 SWEDIKWLRRLT-SLPIVAKGILRGDDAREAVKHGLNGILVSNHGARQ----LDGVPATIDVLPEIVEAVEG-KVEVFLD 313 (392)
T ss_dssp CHHHHHHHC--C-CSCEEEEEECCHHHHHHHHHTTCCEEEECCGGGTS----STTCCCHHHHHHHHHHHHTT-SSEEEEC
T ss_pred HHHHHHHHHHhh-CCCEEEEecCCHHHHHHHHHcCCCEEEeCCCCCCc----CCCCcChHHHHHHHHHHcCC-CCEEEEE
Confidence 356699999988 79999999999999999999999999998777655 35677 88888888876642 5999999
Q ss_pred CCCCCHHHHHHHHHcCCCEEEECccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeec
Q psy1056 437 GGVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVA 516 (590)
Q Consensus 437 GGi~~~~di~kalalGA~~v~~g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (590)
|||+++.|++|||++|||+|++|++|. |+++..+.
T Consensus 314 GGI~~g~Dv~kalalGAd~V~iGr~~l--------------------~~~~~~g~------------------------- 348 (392)
T 2nzl_A 314 GGVRKGTDVLKALALGAKAVFVGRPIV--------------------WGLAFQGE------------------------- 348 (392)
T ss_dssp SSCCSHHHHHHHHHTTCSEEEECHHHH--------------------HHHHHHHH-------------------------
T ss_pred CCCCCHHHHHHHHHhCCCeeEECHHHH--------------------HHHHhcCh-------------------------
Confidence 999999999999999999999999883 33322111
Q ss_pred ccceeEEeeCCchhchHHHHHhhhhhhCcccCcCcHHHHHHh
Q psy1056 517 QGVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRAM 558 (590)
Q Consensus 517 eg~~~~~~~~~~~~~~~~~~~~~l~~~m~~~G~~~i~~l~~~ 558 (590)
.++.++++.+..+|+..|.++|++++.||++.
T Consensus 349 ----------~gv~~~l~~l~~el~~~m~~~G~~~i~el~~~ 380 (392)
T 2nzl_A 349 ----------KGVQDVLEILKEEFRLAMALSGCQNVKVIDKT 380 (392)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHHHTCSBGGGCCGG
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHhCCCcHHHHhhh
Confidence 12677899999999999999999999999876
|
| >1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=8.9e-17 Score=174.85 Aligned_cols=140 Identities=16% Similarity=0.163 Sum_probs=116.0
Q ss_pred HHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCcccccc-chhHHHHHHHHHhc----CCCcE
Q psy1056 359 IEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGR-NGTAVYRVAEYASR----RGVPV 433 (590)
Q Consensus 359 l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~----~~v~i 433 (590)
.+.++++++.+ ++|+++|++.+.++|+.+.++|||+|.|+.+.+++ + +.+. +...+.++.+.+.. .++||
T Consensus 332 ~~~i~~lr~~~-~~PvivKgv~~~e~A~~a~~aGad~I~vs~hgG~~---~-d~~~~~~~~l~~v~~~v~~~~~~~~ipV 406 (511)
T 1kbi_A 332 WKDIEELKKKT-KLPIVIKGVQRTEDVIKAAEIGVSGVVLSNHGGRQ---L-DFSRAPIEVLAETMPILEQRNLKDKLEV 406 (511)
T ss_dssp HHHHHHHHHHC-SSCEEEEEECSHHHHHHHHHTTCSEEEECCTTTTS---S-TTCCCHHHHHHHHHHHHHTTTCBTTBEE
T ss_pred HHHHHHHHHHh-CCcEEEEeCCCHHHHHHHHHcCCCEEEEcCCCCcc---C-CCCCchHHHHHHHHHHHHhhccCCCcEE
Confidence 46789999988 79999999999999999999999999998776665 3 2344 66677788777642 25999
Q ss_pred EecCCCCCHHHHHHHHHcCCCEEEECccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccce
Q psy1056 434 IADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKL 513 (590)
Q Consensus 434 ia~GGi~~~~di~kalalGA~~v~~g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~ 513 (590)
|++|||+++.|++|||++|||+|++|++|. |+++..+.
T Consensus 407 ia~GGI~~g~Dv~kaLalGAdaV~iGr~~l--------------------~~~~~~G~---------------------- 444 (511)
T 1kbi_A 407 FVDGGVRRGTDVLKALCLGAKGVGLGRPFL--------------------YANSCYGR---------------------- 444 (511)
T ss_dssp EEESSCCSHHHHHHHHHHTCSEEEECHHHH--------------------HHHHHHHH----------------------
T ss_pred EEECCCCCHHHHHHHHHcCCCEEEECHHHH--------------------HHHHhcCh----------------------
Confidence 999999999999999999999999999883 33322111
Q ss_pred eecccceeEEeeCCchhchHHHHHhhhhhhCcccCcCcHHHHHHh
Q psy1056 514 KVAQGVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRAM 558 (590)
Q Consensus 514 ~~~eg~~~~~~~~~~~~~~~~~~~~~l~~~m~~~G~~~i~~l~~~ 558 (590)
.++.++++.+..+|+..|.++|++++.||++.
T Consensus 445 -------------~gv~~~l~~l~~el~~~m~~~G~~~i~el~~~ 476 (511)
T 1kbi_A 445 -------------NGVEKAIEILRDEIEMSMRLLGVTSIAELKPD 476 (511)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHTCCBGGGCCGG
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHhCCCcHHHHhHH
Confidence 12677899999999999999999999999877
|
| >3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=4.3e-16 Score=154.41 Aligned_cols=78 Identities=18% Similarity=0.327 Sum_probs=59.3
Q ss_pred EEEEEecchhhccccccccccchhhccc-cCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccccc
Q psy1056 228 LLGIVTSRDVDFLENSANMDLKIEKVMT-NVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSR 306 (590)
Q Consensus 228 lvGivt~~Dl~~~~~~~~~~~~V~~im~-~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~ 306 (590)
+..+.|..|............+++++|+ + +++++++++++.+|+++|.+++++++||+|++|+++|+||.+|+++..
T Consensus 165 ~~~i~t~~d~~~~~~~~~~~~~v~~im~~~--~~~~~~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dll~~~ 242 (245)
T 3l2b_A 165 ITVITTPHDSFTASRLIVQSLPVDYVMTKD--NLVAVSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSIARFHLISTH 242 (245)
T ss_dssp CEEEECSSCHHHHHHHGGGGSBHHHHSBCT--TCCCEETTSBHHHHHHHHHHHCCSEEEEECTTCBEEEEEECC------
T ss_pred CeEEEeCCChHHHHHHHhcCCceeeEecCC--ccEEECCCCcHHHHHHHHHhcCCceEEEEcCCCeEEEEEEHHHhhchh
Confidence 3456666676532222234588999999 6 999999999999999999999999999999999999999999999864
Q ss_pred C
Q psy1056 307 D 307 (590)
Q Consensus 307 ~ 307 (590)
.
T Consensus 243 ~ 243 (245)
T 3l2b_A 243 K 243 (245)
T ss_dssp -
T ss_pred h
Confidence 3
|
| >1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0 | Back alignment and structure |
|---|
Probab=99.65 E-value=3.7e-16 Score=164.08 Aligned_cols=139 Identities=19% Similarity=0.224 Sum_probs=115.7
Q ss_pred HHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecC
Q psy1056 359 IEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADG 437 (590)
Q Consensus 359 l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~G 437 (590)
.+.++++++.+ ++|+++|.+.+.++++.+.++|+|+|.|+.+.++. . +++. +...+.++.+.... ++|||++|
T Consensus 214 ~~~i~~l~~~~-~~pv~vK~~~~~e~a~~a~~~Gad~I~vs~~ggr~---~-~~~~~~~~~l~~v~~~~~~-~ipvia~G 287 (370)
T 1gox_A 214 WKDVAWLQTIT-SLPILVKGVITAEDARLAVQHGAAGIIVSNHGARQ---L-DYVPATIMALEEVVKAAQG-RIPVFLDG 287 (370)
T ss_dssp HHHHHHHHHHC-CSCEEEECCCSHHHHHHHHHTTCSEEEECCGGGTS---S-TTCCCHHHHHHHHHHHTTT-SSCEEEES
T ss_pred HHHHHHHHHHh-CCCEEEEecCCHHHHHHHHHcCCCEEEECCCCCcc---C-CCcccHHHHHHHHHHHhCC-CCEEEEEC
Confidence 46788999988 79999999999999999999999999998777765 3 3455 77777777765432 59999999
Q ss_pred CCCCHHHHHHHHHcCCCEEEECccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecc
Q psy1056 438 GVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQ 517 (590)
Q Consensus 438 Gi~~~~di~kalalGA~~v~~g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~e 517 (590)
||+++.|+.|+|++|||+|++|++| +||++..+.
T Consensus 288 GI~~~~D~~k~l~~GAdaV~iGr~~--------------------l~~~~~~G~-------------------------- 321 (370)
T 1gox_A 288 GVRRGTDVFKALALGAAGVFIGRPV--------------------VFSLAAEGE-------------------------- 321 (370)
T ss_dssp SCCSHHHHHHHHHHTCSEEEECHHH--------------------HHHHHHHHH--------------------------
T ss_pred CCCCHHHHHHHHHcCCCEEeecHHH--------------------HHHHhhccH--------------------------
Confidence 9999999999999999999999988 244331110
Q ss_pred cceeEEeeCCchhchHHHHHhhhhhhCcccCcCcHHHHHHh
Q psy1056 518 GVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRAM 558 (590)
Q Consensus 518 g~~~~~~~~~~~~~~~~~~~~~l~~~m~~~G~~~i~~l~~~ 558 (590)
..+.++++.+..+|+..|.++|++++.||++.
T Consensus 322 ---------~gv~~~~~~l~~el~~~m~~~G~~~i~el~~~ 353 (370)
T 1gox_A 322 ---------AGVKKVLQMMRDEFELTMALSGCRSLKEISRS 353 (370)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHTCSBTTTCCGG
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHhCCCCHHHhhhc
Confidence 12777899999999999999999999999987
|
| >1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=5.1e-16 Score=169.76 Aligned_cols=273 Identities=21% Similarity=0.290 Sum_probs=92.9
Q ss_pred CcCCCCCHHHHHHHHHhhhcccCccccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccccccccCC
Q psy1056 1 IIHHNCTPEYQANEVLKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENS 80 (590)
Q Consensus 1 ~~~~~~~~~~~~~~~~~vk~~~~~m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Did~l~~~ 80 (590)
+||++++++++...+.+|++++++|+++++++++++|+.+|+++|.+++++++||+|++ ++++|+||.+|+....
T Consensus 77 ~i~~~~~~e~~~~~v~~v~~~~~iM~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~---~~lvGivt~~Dl~~~~-- 151 (494)
T 1vrd_A 77 IIHKNLTPDEQARQVSIVKKTENGIIYDPITVTPDMTVKEAIDLMAEYKIGGLPVVDEE---GRLVGLLTNRDVRFEK-- 151 (494)
T ss_dssp EECSSSCHHHHHHHHHHHHTC-----------------------------------------------------------
T ss_pred EEecCCChHHHHHHHHhhhhHhhcCccCCeEECCCCCHHHHHHHHHHcCceEEEEEcCC---CEEEEEEEHHHHHhhc--
Confidence 47999999999999999999999999999999999999999999999999999999976 7999999999432210
Q ss_pred CCCCCCccCCcccccccccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHHcCCcEEEEcCCCC
Q psy1056 81 ANMDLKIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQG 160 (590)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~~~~dvv~~~~~~~ 160 (590)
+...++
T Consensus 152 ---------~~~~~v----------------------------------------------------------------- 157 (494)
T 1vrd_A 152 ---------NLSKKI----------------------------------------------------------------- 157 (494)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------CCCCcH-----------------------------------------------------------------
Confidence 000000
Q ss_pred chHHHHHHHHHhhhcCCCcccccc--cccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecc
Q psy1056 161 NSIYQIEMIKYIKKEYPDMQVIGG--NVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSR 235 (590)
Q Consensus 161 ~~~~~~~~v~~vk~~~~~~~im~~--~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~ 235 (590)
.++|+. ++.+ ++++.++++.| .++++..+||+|+ +++++|+||..
T Consensus 158 ------------------~~im~~~~~~~~v~~~~~l~ea~~~m---------~~~~~~~lpVVd~---~g~lvGiIt~~ 207 (494)
T 1vrd_A 158 ------------------KDLMTPREKLIVAPPDISLEKAKEIL---------HQHRIEKLPLVSK---DNKLVGLITIK 207 (494)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------------------HHHhCCCCCCeEECCCCCHHHHHHHH---------HHcCCcEEEEEcC---CCeEEEEEEHH
Confidence 013332 2222 77888999999 9999999999998 79999999999
Q ss_pred hhhccccccccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCCCCCCccc
Q psy1056 236 DVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDE 315 (590)
Q Consensus 236 Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~~~~~~d~ 315 (590)
|+....... ...++...+..--.-+.......+.+..+.+.+++.+.+--..|...+ ..+.++...... .
T Consensus 208 Dll~~~~~~---~~~~D~~~~l~vga~ig~~~~~~~~a~~l~~aGvd~v~i~~~~G~~~~---~~e~i~~i~~~~----p 277 (494)
T 1vrd_A 208 DIMSVIEHP---NAARDEKGRLLVGAAVGTSPETMERVEKLVKAGVDVIVIDTAHGHSRR---VIETLEMIKADY----P 277 (494)
T ss_dssp -CHHHHTCT---TCCBCTTSCBCCEEEECSSTTHHHHHHHHHHTTCSEEEECCSCCSSHH---HHHHHHHHHHHC----T
T ss_pred HHHhhhccc---cccccchhhhccccccCcCHhHHHHHHHHHHhCCCEEEEEecCCchHH---HHHHHHHHHHHC----C
Confidence 998322111 111111110000012334456677888888888887655222232110 112222211100 0
Q ss_pred CCceEEeEeeccchhHHHHHHHHHHcCCcEEEEecCCCc----------hhhHHHHHHHHHH---hCCCceEEe-ccccC
Q psy1056 316 NNQLIVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGN----------SIYQIEMIKFIKK---EYPDMQVIG-GNVLF 381 (590)
Q Consensus 316 ~~~l~v~a~i~~~~~~~e~~~~li~~gad~i~V~~~~G~----------~~~~l~~i~~i~~---~~~~vpvi~-g~v~s 381 (590)
.-.+.++ +. ...+.+..+.++|+|++.+....|. .......+..+++ .. ++|+++ |++.+
T Consensus 278 ~~pvi~g-~~----~t~e~a~~l~~~G~d~I~v~~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~~-~ipvia~GGI~~ 351 (494)
T 1vrd_A 278 DLPVVAG-NV----ATPEGTEALIKAGADAVKVGVGPGSICTTRVVAGVGVPQLTAVMECSEVARKY-DVPIIADGGIRY 351 (494)
T ss_dssp TSCEEEE-EE----CSHHHHHHHHHTTCSEEEECSSCSTTCHHHHHHCCCCCHHHHHHHHHHHHHTT-TCCEEEESCCCS
T ss_pred CceEEeC-Cc----CCHHHHHHHHHcCCCEEEEcCCCCccccccccCCCCccHHHHHHHHHHHHhhc-CCCEEEECCcCC
Confidence 1111222 22 2245567888999999998432220 0012233333333 33 689985 88889
Q ss_pred cHHHHHHHHCCCCEEEE
Q psy1056 382 GYQPRATLLNFIYQIEM 398 (590)
Q Consensus 382 ~~~a~~l~~~Gvd~i~v 398 (590)
.+++.+++.+|||++-+
T Consensus 352 ~~di~kala~GAd~V~i 368 (494)
T 1vrd_A 352 SGDIVKALAAGAESVMV 368 (494)
T ss_dssp HHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHcCCCEEEE
Confidence 99999999999999965
|
| >1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=5.9e-16 Score=160.49 Aligned_cols=158 Identities=21% Similarity=0.216 Sum_probs=120.7
Q ss_pred cCCcEEEEecC-------CCchh--hHHHHHHHHHHhCCCceEEeccc---cCcHHHHHHHHCCCCEEEEccccc-----
Q psy1056 341 AGVDVVILDSS-------QGNSI--YQIEMIKFIKKEYPDMQVIGGNV---LFGYQPRATLLNFIYQIEMIKFIK----- 403 (590)
Q Consensus 341 ~gad~i~V~~~-------~G~~~--~~l~~i~~i~~~~~~vpvi~g~v---~s~~~a~~l~~~Gvd~i~v~~~~~----- 403 (590)
.+++.+.++.. .++.. .+.+.++++++ + ++|+++|++ .+.++|+.+.++|+|+|+|+.+.+
T Consensus 144 ~~~~a~~i~~n~~~~~~~~~~~~~~~~~~~i~~vr~-~-~~Pv~vK~v~~g~~~e~a~~~~~~G~d~I~vs~~ggt~~~~ 221 (332)
T 1vcf_A 144 LEADALAFHVNPLQEAVQRGDTDFRGLVERLAELLP-L-PFPVMVKEVGHGLSREAALALRDLPLAAVDVAGAGGTSWAR 221 (332)
T ss_dssp HTCSEEEEECCHHHHHHTTSCCCCTTHHHHHHHHCS-C-SSCEEEECSSSCCCHHHHHHHTTSCCSEEECCCBTSCCHHH
T ss_pred cCCCceeeccchHHHHhcCCCccHHHHHHHHHHHHc-C-CCCEEEEecCCCCCHHHHHHHHHcCCCEEEeCCCCCCcchh
Confidence 35676655542 23332 35788999999 7 899999988 799999999999999998865432
Q ss_pred ----ccC-----CCcccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCCCCCCCceE
Q psy1056 404 ----KEY-----PDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYF 473 (590)
Q Consensus 404 ----~~~-----~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~~es~~~~~ 473 (590)
+.. .-+.+||. +...+.++++.+. ++|||++|||+++.|++|||++|||+|++|++|..
T Consensus 222 ~~~~r~~~~~~~~~~~~~g~~~~~~l~~v~~~~~--~ipvia~GGI~~~~d~~kal~~GAd~V~igr~~l~--------- 290 (332)
T 1vcf_A 222 VEEWVRFGEVRHPELCEIGIPTARAILEVREVLP--HLPLVASGGVYTGTDGAKALALGADLLAVARPLLR--------- 290 (332)
T ss_dssp HHHTC--------CCTTCSCBHHHHHHHHHHHCS--SSCEEEESSCCSHHHHHHHHHHTCSEEEECGGGHH---------
T ss_pred HHHhhccccchhhhHhhccccHHHHHHHHHHhcC--CCeEEEECCCCCHHHHHHHHHhCCChHhhhHHHHH---------
Confidence 320 00156777 7777777776543 59999999999999999999999999999998841
Q ss_pred eecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecccceeEEeeCCchhchHHHHHhhhhhhCcccCcCcHH
Q psy1056 474 FSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLS 553 (590)
Q Consensus 474 ~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~~~~~~~~~~~l~~~m~~~G~~~i~ 553 (590)
++ . +|. ..+.++++.+..+|+..|.++|+++++
T Consensus 291 -----------~~------~-----------------------~G~-------~gv~~~~~~l~~el~~~m~~~G~~~i~ 323 (332)
T 1vcf_A 291 -----------PA------L-----------------------EGA-------ERVAAWIGDYLEELRTALFAIGARNPK 323 (332)
T ss_dssp -----------HH------T-----------------------TCH-------HHHHHHHHHHHHHHHHHHHHHTCSSGG
T ss_pred -----------HH------h-----------------------ccH-------HHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 11 0 010 127788999999999999999999999
Q ss_pred HHHHh
Q psy1056 554 NLRAM 558 (590)
Q Consensus 554 ~l~~~ 558 (590)
||++.
T Consensus 324 el~~~ 328 (332)
T 1vcf_A 324 EARGR 328 (332)
T ss_dssp GGTTC
T ss_pred HHhhh
Confidence 99875
|
| >1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-15 Score=159.66 Aligned_cols=165 Identities=18% Similarity=0.185 Sum_probs=122.2
Q ss_pred HHHHHcCCcEEEEecCC--------Cchh--hHHHHHHHHHHhCCCceEEeccc---cCcHHHHHHHHCCCCEEEEcccc
Q psy1056 336 KLLSQAGVDVVILDSSQ--------GNSI--YQIEMIKFIKKEYPDMQVIGGNV---LFGYQPRATLLNFIYQIEMIKFI 402 (590)
Q Consensus 336 ~~li~~gad~i~V~~~~--------G~~~--~~l~~i~~i~~~~~~vpvi~g~v---~s~~~a~~l~~~Gvd~i~v~~~~ 402 (590)
..+...|++.+.++... |+.. .+.+.++++++.+ ++|+++|.+ .+.++|+.+.++|+|+|.++.+.
T Consensus 134 ~~~~~~gad~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~vr~~~-~~Pv~vK~~~~~~~~~~a~~a~~~Gad~I~v~~~g 212 (349)
T 1p0k_A 134 EAVEMIGANALQIHLNVIQEIVMPEGDRSFSGALKRIEQICSRV-SVPVIVKEVGFGMSKASAGKLYEAGAAAVDIGGYG 212 (349)
T ss_dssp HHHHHTTCSEEEEEECTTTTC--------CTTHHHHHHHHHHHC-SSCEEEEEESSCCCHHHHHHHHHHTCSEEEEEC--
T ss_pred HHHHhcCCCeEEecccchhhhcCCCCCcchHHHHHHHHHHHHHc-CCCEEEEecCCCCCHHHHHHHHHcCCCEEEEcCCC
Confidence 34556789998887542 2322 3678899999888 799999866 78999999999999999886543
Q ss_pred c---------ccCC---Ccccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCCCCCC
Q psy1056 403 K---------KEYP---DMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAP 469 (590)
Q Consensus 403 ~---------~~~~---~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~~es~ 469 (590)
+ +..+ .+.+||. +...+.++++.+ .++|||++|||+++.|+.|++++|||+|++|++|....+
T Consensus 213 gt~~~~~e~~r~~~~~~~~~~~g~~~~~~l~~v~~~~--~~ipvia~GGI~~~~d~~k~l~~GAd~V~iG~~~l~~~~-- 288 (349)
T 1p0k_A 213 GTNFSKIENLRRQRQISFFNSWGISTAASLAEIRSEF--PASTMIASGGLQDALDVAKAIALGASCTGMAGHFLKALT-- 288 (349)
T ss_dssp -------------CCGGGGTTCSCCHHHHHHHHHHHC--TTSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHHHHH--
T ss_pred CcchhhHHHhhcccchhhhhccCccHHHHHHHHHHhc--CCCeEEEECCCCCHHHHHHHHHcCCCEEEEcHHHHHHHh--
Confidence 2 3200 0145677 777777776543 269999999999999999999999999999998831110
Q ss_pred CceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecccceeEEeeCCchhchHHHHHhhhhhhCcccCc
Q psy1056 470 GEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGA 549 (590)
Q Consensus 470 ~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~~~~~~~~~~~l~~~m~~~G~ 549 (590)
+ +|. ..+.+.++.+..+|+..|.++|+
T Consensus 289 ---------------------~-------------------------~g~-------~~~~~~~~~~~~~l~~~m~~~G~ 315 (349)
T 1p0k_A 289 ---------------------D-------------------------SGE-------EGLLEEIQLILEELKLIMTVLGA 315 (349)
T ss_dssp ---------------------H-------------------------HHH-------HHHHHHHHHHHHHHHHHHHHHTC
T ss_pred ---------------------h-------------------------cCH-------HHHHHHHHHHHHHHHHHHHHhCC
Confidence 0 010 12667799999999999999999
Q ss_pred CcHHHHHHh
Q psy1056 550 KSLSNLRAM 558 (590)
Q Consensus 550 ~~i~~l~~~ 558 (590)
.++.||++.
T Consensus 316 ~~i~el~~~ 324 (349)
T 1p0k_A 316 RTIADLQKA 324 (349)
T ss_dssp CBHHHHTTC
T ss_pred CCHHHHhhC
Confidence 999999976
|
| >1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=2.8e-16 Score=152.63 Aligned_cols=158 Identities=8% Similarity=0.068 Sum_probs=101.7
Q ss_pred cccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhccccccccccchhhccc
Q psy1056 179 MQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMT 255 (590)
Q Consensus 179 ~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~~~~~~~~V~~im~ 255 (590)
.++|..++.+ ++++.+|++.| .+++++++||+|+ +++++|+||.+|+..... ..+++++|+
T Consensus 16 ~~~~~~~~~~v~~~~tv~ea~~~m---------~~~~~~~~pVvd~---~~~l~Givt~~dl~~~~~----~~~v~~im~ 79 (213)
T 1vr9_A 16 KKWVTQDFPMVEESATVRECLHRM---------RQYQTNECIVKDR---EGHFRGVVNKEDLLDLDL----DSSVFNKVS 79 (213)
T ss_dssp GGGCBSCSCEEETTCBHHHHHHHH---------HHTTSSEEEEECT---TSBEEEEEEGGGGTTSCT----TSBSGGGCB
T ss_pred HHhhcCCCeEECCCCcHHHHHHHH---------HHCCCCEEEEEcC---CCEEEEEEEHHHHHhhcC----CCcHHHHcc
Confidence 3477777665 88999999999 9999999999997 699999999999984432 468999999
Q ss_pred cCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCCCCCCcccCCceEEeEeeccchhHHHHH
Q psy1056 256 NVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREADKNRL 335 (590)
Q Consensus 256 ~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~ 335 (590)
+ +++++++++++.+|+++|.+++++++||+|++|+++|+||.+|+++.........+...++.+... .......+.+
T Consensus 80 ~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~Dil~~~~~~~~~~~~~~~l~~~~~-~~~~~l~~~~ 156 (213)
T 1vr9_A 80 L--PDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIEALAMDVPGIRFSVLLE-DKPGELRKVV 156 (213)
T ss_dssp C--TTCCEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHHHSCC------------------------
T ss_pred C--CCEEECCCCcHHHHHHHHHHhCCCEEEEEcCCCEEEEEEEHHHHHHHHHHHhcCCCCcEEEEEEeC-CCCccHHHHH
Confidence 8 999999999999999999999999999999889999999999999876644433333344332211 1122355678
Q ss_pred HHHHHcCCcEEEEecCCCch
Q psy1056 336 KLLSQAGVDVVILDSSQGNS 355 (590)
Q Consensus 336 ~~li~~gad~i~V~~~~G~~ 355 (590)
+.|.+++++.+.|.+.+|+.
T Consensus 157 ~~l~~~~~~~l~V~~~~~~~ 176 (213)
T 1vr9_A 157 DALALSNINILSVITTRSGD 176 (213)
T ss_dssp --------------------
T ss_pred HHHHHCCCcEEEEEEEecCC
Confidence 88999999999988877754
|
| >1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=4.6e-16 Score=170.77 Aligned_cols=270 Identities=27% Similarity=0.407 Sum_probs=153.0
Q ss_pred CcCCCCCHHHHHHHHHhhhcccCccccCCEEECCCCCHHHHHHHHHHcCccceeeccC---CcccceeEEEEeccccccc
Q psy1056 1 IIHHNCTPEYQANEVLKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTEN---GKLGEKLLGIVTSRDVDFL 77 (590)
Q Consensus 1 ~~~~~~~~~~~~~~~~~vk~~~~~m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~---~~~~~~lvGivT~~Did~l 77 (590)
+||.|+|++.+...+++|++++++|.++|+++++++|+.+|+++|.+++++.+||+|+ + ++++|+||.+|+...
T Consensus 90 ii~~~~t~e~~~~~v~~v~~~~~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~---~~lvGiVt~~Dl~~~ 166 (514)
T 1jcn_A 90 FIHHNCTPEFQANEVRKVKNFEQGFITDPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMG---SKLVGIVTSRDIDFL 166 (514)
T ss_dssp EECCSSCHHHHHHHHHHHHTCCTTSCSSCCCCCC-----------------CEESCC-----------CCEECTTTTC--
T ss_pred EEecCCCHHHHHHHHHhhhhhhhccccCCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcC---CEEEEEEEHHHHHhh
Confidence 4789999999999999999999999999999999999999999999999999999997 4 699999999954321
Q ss_pred cCCCCCCCCccCCcccccccccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHHcCCcEEEEcC
Q psy1056 78 ENSANMDLKIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDS 157 (590)
Q Consensus 78 ~~~~~~~~~~~~~~~~~l~~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~~~~dvv~~~~ 157 (590)
. + .+...+
T Consensus 167 ~-~--------~~~~~~--------------------------------------------------------------- 174 (514)
T 1jcn_A 167 A-E--------KDHTTL--------------------------------------------------------------- 174 (514)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred h-h--------ccCCCC---------------------------------------------------------------
Confidence 0 0 000000
Q ss_pred CCCchHHHHHHHHHhhhcCCCcccccc--cccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEE
Q psy1056 158 SQGNSIYQIEMIKYIKKEYPDMQVIGG--NVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIV 232 (590)
Q Consensus 158 ~~~~~~~~~~~v~~vk~~~~~~~im~~--~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGiv 232 (590)
..++|+. ++.+ ++++.++++.| .++++..+||+|+ +++++|+|
T Consensus 175 --------------------v~~vm~~~~~~~tv~~~~~l~ea~~~m---------~~~~~~~lpVVd~---~g~lvGiI 222 (514)
T 1jcn_A 175 --------------------LSEVMTPRIELVVAPAGVTLKEANEIL---------QRSKKGKLPIVND---CDELVAII 222 (514)
T ss_dssp --------------------------CCBCCCCEETTCCSTTTTTHH---------HHHTCSCCCEESS---SSCCC---
T ss_pred --------------------HHHHhCCCCCCeEECCCCCHHHHHHHH---------HHcCCCcccEECC---CCeEEEEE
Confidence 0113433 3333 67778888888 8899999999998 79999999
Q ss_pred ecchhhccccccccccchhhccccCCCee---EEcCCCCHHHHHHHHHhcCCCcceEEcC-CCceEEEEeecccccccCC
Q psy1056 233 TSRDVDFLENSANMDLKIEKVMTNVNEII---SAQAGISLEEANVILEKSKKGKLPILND-KGELIALIARTDLKKSRDY 308 (590)
Q Consensus 233 t~~Dl~~~~~~~~~~~~V~~im~~~~~~~---tv~~~~~l~ea~~~m~~~~~~~lpVvd~-~g~l~Giit~~dll~~~~~ 308 (590)
|.+|+....... ....+ +.. .+. .+.......+..+.+.+.+.+.+-+ |- .|.... ..++++...
T Consensus 223 t~~Dll~~~~~~---~~~~~-~~~--rl~vga~vG~~~~~~~~a~~~~~aG~d~v~i-~~~~G~~~~---~~~~i~~i~- 291 (514)
T 1jcn_A 223 ARTDLKKNRDYP---LASKD-SQK--QLLCGAAVGTREDDKYRLDLLTQAGVDVIVL-DSSQGNSVY---QIAMVHYIK- 291 (514)
T ss_dssp -CCCCSSCCCCT---TCCBC-TTS--CBCCEEEECSSTTHHHHHHHHHHTTCSEEEE-CCSCCCSHH---HHHHHHHHH-
T ss_pred EHHHHHHHhhCc---chhcc-cCC--ceeeeeEecCchhhHHHHHHHHHcCCCEEEe-eccCCcchh---HHHHHHHHH-
Confidence 999998332211 11112 222 222 2333344566677788888875543 22 222100 012232221
Q ss_pred CCCCcccCCceEEeE-eeccchhHHHHHHHHHHcCCcEEEEecCCC------------c-hhhHHHHHHHHHHhCCCceE
Q psy1056 309 PDSSKDENNQLIVGA-AIGTREADKNRLKLLSQAGVDVVILDSSQG------------N-SIYQIEMIKFIKKEYPDMQV 374 (590)
Q Consensus 309 ~~~~~d~~~~l~v~a-~i~~~~~~~e~~~~li~~gad~i~V~~~~G------------~-~~~~l~~i~~i~~~~~~vpv 374 (590)
+..+...+.. ++ ...+.+..+.++|+|.+.+....| . ....+..+..+++.+ ++|+
T Consensus 292 -----~~~~~~pvi~~~v----~t~~~a~~l~~aGad~I~vg~~~G~~~~t~~~~~~g~~~~~~~~~~~~~~~~~-~ipV 361 (514)
T 1jcn_A 292 -----QKYPHLQVIGGNV----VTAAQAKNLIDAGVDGLRVGMGCGSICITQEVMACGRPQGTAVYKVAEYARRF-GVPI 361 (514)
T ss_dssp -----HHCTTCEEEEEEE----CSHHHHHHHHHHTCSEEEECSSCSCCBTTBCCCSCCCCHHHHHHHHHHHHGGG-TCCE
T ss_pred -----HhCCCCceEeccc----chHHHHHHHHHcCCCEEEECCCCCcccccccccCCCccchhHHHHHHHHHhhC-CCCE
Confidence 1111222222 33 234668888999999998832111 1 122356666777666 7999
Q ss_pred Ee-ccccCcHHHHHHHHCCCCEEEE
Q psy1056 375 IG-GNVLFGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 375 i~-g~v~s~~~a~~l~~~Gvd~i~v 398 (590)
++ |++.+.+++.+++.+|||++-+
T Consensus 362 ia~GGI~~~~di~kala~GAd~V~i 386 (514)
T 1jcn_A 362 IADGGIQTVGHVVKALALGASTVMM 386 (514)
T ss_dssp EEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred EEECCCCCHHHHHHHHHcCCCeeeE
Confidence 95 8888999999999999999954
|
| >3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.4e-15 Score=134.71 Aligned_cols=112 Identities=13% Similarity=0.207 Sum_probs=97.0
Q ss_pred cccccc--ccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCC-CeEEEEEecchhhccccccccccchhhc
Q psy1056 180 QVIGGN--VVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLG-EKLLGIVTSRDVDFLENSANMDLKIEKV 253 (590)
Q Consensus 180 ~im~~~--~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~-~~lvGivt~~Dl~~~~~~~~~~~~V~~i 253 (590)
++|+.+ +.+ ++++.+|++.| .+++++++||+++ + ++++|++|.+|+...........+++++
T Consensus 7 diM~~~~~~~~v~~~~~~~~a~~~m---------~~~~~~~~pVvd~---~~~~~vGivt~~dl~~~~~~~~~~~~v~~~ 74 (127)
T 3nqr_A 7 DIMIPRSQMITLKRNQTLDECLDVI---------IESAHSRFPVISE---DKDHIEGILMAKDLLPFMRSDAEAFSMDKV 74 (127)
T ss_dssp HHSEEGGGCCCEETTCCHHHHHHHH---------HHHCCSEEEEESS---STTCEEEEEEGGGGGGGGSTTCCCCCHHHH
T ss_pred HhcccHHHeEEEcCCCCHHHHHHHH---------HhCCCCEEEEEcC---CCCcEEEEEEHHHHHHHHhccCCCCCHHHH
Confidence 477743 544 89999999999 9999999999997 6 7999999999998432222346889999
Q ss_pred cccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccccc
Q psy1056 254 MTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSR 306 (590)
Q Consensus 254 m~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~ 306 (590)
|+ +++++++++++.+|+++|.+++++.+||+|++|+++|+||.+|+++..
T Consensus 75 m~---~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Giit~~dll~~l 124 (127)
T 3nqr_A 75 LR---TAVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELI 124 (127)
T ss_dssp CB---CCCEEETTCBHHHHHHHHHHTTCCEEEEECTTSCEEEEEEHHHHHHHC
T ss_pred cC---CCeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHH
Confidence 96 567999999999999999999999999999999999999999999864
|
| >3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.3e-15 Score=135.19 Aligned_cols=114 Identities=11% Similarity=0.171 Sum_probs=97.4
Q ss_pred cccc--ccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCC-CeEEEEEecchhhcccc-ccccccchhh
Q psy1056 180 QVIG--GNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLG-EKLLGIVTSRDVDFLEN-SANMDLKIEK 252 (590)
Q Consensus 180 ~im~--~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~-~~lvGivt~~Dl~~~~~-~~~~~~~V~~ 252 (590)
++|+ .++.+ ++++.+|++.| .+++++++||+++ + ++++|+||.+|++.... ......++++
T Consensus 7 ~iM~~~~~~~~v~~~~~v~~a~~~m---------~~~~~~~~pVvd~---~~~~~vGivt~~dl~~~~~~~~~~~~~v~~ 74 (136)
T 3lfr_A 7 DIMVPRSQMISIKATQTPREFLPAV---------IDAAHSRYPVIGE---SHDDVLGVLLAKDLLPLILKADGDSDDVKK 74 (136)
T ss_dssp HHSEEGGGCCCEETTCCHHHHHHHH---------HHHCCSEEEEESS---STTCEEEEEEGGGGGGGGGSSSGGGCCGGG
T ss_pred hccccHHHEEEEcCCCCHHHHHHHH---------HhCCCCEEEEEcC---CCCcEEEEEEHHHHHHHHHhccCCCcCHHH
Confidence 4776 44444 89999999999 9999999999997 5 79999999999984322 2234678999
Q ss_pred ccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCC
Q psy1056 253 VMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDY 308 (590)
Q Consensus 253 im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~ 308 (590)
+|+ +++++++++++.+|+++|.+++++.+||+|++|+++|+||.+|+++.+..
T Consensus 75 ~m~---~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~~ 127 (136)
T 3lfr_A 75 LLR---PATFVPESKRLNVLLREFRANHNHMAIVIDEYGGVAGLVTIEDVLEQIVG 127 (136)
T ss_dssp TCB---CCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHTTC--
T ss_pred HcC---CCeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhC
Confidence 996 58899999999999999999999999999999999999999999987653
|
| >3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.59 E-value=2e-15 Score=141.44 Aligned_cols=117 Identities=12% Similarity=0.137 Sum_probs=101.4
Q ss_pred CCCccccc--ccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCC-CeEEEEEecchhhccccccccccc
Q psy1056 176 YPDMQVIG--GNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLG-EKLLGIVTSRDVDFLENSANMDLK 249 (590)
Q Consensus 176 ~~~~~im~--~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~-~~lvGivt~~Dl~~~~~~~~~~~~ 249 (590)
.+..++|+ .++.+ ++++.+|++.| .+++++++||+++ + ++++|+||.+|+....... ...+
T Consensus 42 ~~v~diM~~~~~~~~v~~~~~v~~a~~~m---------~~~~~~~~pVvd~---~~~~lvGivt~~dl~~~~~~~-~~~~ 108 (172)
T 3lhh_A 42 RTISSLMVPRSDIVFLDLNLPLDANLRTV---------MQSPHSRFPVCRN---NVDDMVGIISAKQLLSESIAG-ERLE 108 (172)
T ss_dssp -CTTTTSEEGGGCCCEETTSCHHHHHHHH---------HTCCCSEEEEESS---STTSEEEEEEHHHHHHHHHTT-CCCC
T ss_pred CCHHHhCccHHHeEEEcCCCCHHHHHHHH---------HhCCCCEEEEEeC---CCCeEEEEEEHHHHHHHHhhc-Cccc
Confidence 45567898 55554 88999999999 9999999999997 6 8999999999998432221 2578
Q ss_pred hhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCC
Q psy1056 250 IEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDY 308 (590)
Q Consensus 250 V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~ 308 (590)
++++| + +++++++++++.+|+++|.+++++.+||+|++|+++|+||..|+++....
T Consensus 109 v~~im-~--~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dil~~l~~ 164 (172)
T 3lhh_A 109 LVDLV-K--NCNFVPNSLSGMELLEHFRTTGSQMVFVVDEYGDLKGLVTLQDMMDALTG 164 (172)
T ss_dssp GGGGC-B--CCEEEETTCCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHT
T ss_pred HHHHh-c--CCeEeCCCCCHHHHHHHHHHcCCeEEEEEeCCCCEEEEeeHHHHHHHHhC
Confidence 99999 7 89999999999999999999999999999999999999999999987653
|
| >3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-15 Score=136.12 Aligned_cols=116 Identities=16% Similarity=0.178 Sum_probs=98.5
Q ss_pred CCCcccccc--cccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCC-CeEEEEEecchhhccccccccccc
Q psy1056 176 YPDMQVIGG--NVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLG-EKLLGIVTSRDVDFLENSANMDLK 249 (590)
Q Consensus 176 ~~~~~im~~--~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~-~~lvGivt~~Dl~~~~~~~~~~~~ 249 (590)
.+..++|+. ++.+ ++++.+|++.| .+++++++||+++ + ++++|++|.+|+...........+
T Consensus 6 ~~v~~iM~~~~~v~~v~~~~~~~~a~~~m---------~~~~~~~~pVvd~---~~~~~~Givt~~dl~~~~~~~~~~~~ 73 (130)
T 3i8n_A 6 VPVTQVMTPRPVVFRVDATMTINEFLDKH---------KDTPFSRPLVYSE---QKDNIIGFVHRLELFKMQQSGSGQKQ 73 (130)
T ss_dssp -CCTTTSCCBCCCCEEETTSBHHHHHHHT---------TTCSCSCCEEESS---STTCEEEECCHHHHHHHHHTTTTTSB
T ss_pred CCHhhCCCcHHHEEEEcCCCCHHHHHHHH---------HhCCCCEEEEEeC---CCCcEEEEEEHHHHHHHHhcCCCcCC
Confidence 345568874 3323 89999999999 9999999999997 5 899999999999844322224688
Q ss_pred hhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccccc
Q psy1056 250 IEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSR 306 (590)
Q Consensus 250 V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~ 306 (590)
++++|+ +++++++++++.+|++.|.+++++.+||+|++|+++|+||..|+++..
T Consensus 74 v~~~m~---~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~vGivt~~dil~~l 127 (130)
T 3i8n_A 74 LGAVMR---PIQVVLNNTALPKVFDQMMTHRLQLALVVDEYGTVLGLVTLEDIFEHL 127 (130)
T ss_dssp HHHHSE---ECCEEETTSCHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHH
T ss_pred HHHHhc---CCcCcCCCCcHHHHHHHHHHcCCeEEEEEcCCCCEEEEEEHHHHHHHH
Confidence 999994 688999999999999999999999999999999999999999998764
|
| >3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.3e-15 Score=138.76 Aligned_cols=115 Identities=16% Similarity=0.291 Sum_probs=100.6
Q ss_pred CCCcccccc--cccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCC-CeEEEEEecchhhccccccccccc
Q psy1056 176 YPDMQVIGG--NVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLG-EKLLGIVTSRDVDFLENSANMDLK 249 (590)
Q Consensus 176 ~~~~~im~~--~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~-~~lvGivt~~Dl~~~~~~~~~~~~ 249 (590)
.+..++|+. ++.+ ++++.++++.| .+++++++||+++ + ++++|+||.+|+....... ...+
T Consensus 23 ~~v~diM~~~~~~~~v~~~~~~~~a~~~m---------~~~~~~~~pVvd~---~~~~lvGivt~~dl~~~~~~~-~~~~ 89 (148)
T 3lv9_A 23 KKIREIMVPRTDMVCIYESDSEEKILAIL---------KEEGVTRYPVCRK---NKDDILGFVHIRDLYNQKINE-NKIE 89 (148)
T ss_dssp CBGGGTSEETTTCCCEETTCCHHHHHHHH---------HHSCCSEEEEESS---STTSEEEEEEHHHHHHHHHHH-SCCC
T ss_pred CCHHHccccHHHeEEECCCCCHHHHHHHH---------HHCCCCEEEEEcC---CCCcEEEEEEHHHHHHHHhcC-CCcc
Confidence 556678987 6655 89999999999 9999999999997 6 7999999999998432111 1578
Q ss_pred hhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccccc
Q psy1056 250 IEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSR 306 (590)
Q Consensus 250 V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~ 306 (590)
++++| + +++++++++++.+|+++|.+++++.+||+|++|+++|+||..|+++..
T Consensus 90 v~~~m-~--~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l 143 (148)
T 3lv9_A 90 LEEIL-R--DIIYISENLTIDKALERIRKEKLQLAIVVDEYGGTSGVVTIEDILEEI 143 (148)
T ss_dssp GGGTC-B--CCEEEETTSBHHHHHHHHHHHTCSEEEEECTTSSEEEEEEHHHHHHHH
T ss_pred HHHhc-C--CCeEECCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHH
Confidence 99999 7 899999999999999999999999999999999999999999998864
|
| >3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.1e-15 Score=139.11 Aligned_cols=112 Identities=17% Similarity=0.272 Sum_probs=95.3
Q ss_pred cccc--ccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhcc--c----ccccccc
Q psy1056 180 QVIG--GNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFL--E----NSANMDL 248 (590)
Q Consensus 180 ~im~--~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~--~----~~~~~~~ 248 (590)
++|. .++.+ ++++.+|++.| .+++++++||+|+ +++++|++|.+|+... . .......
T Consensus 19 ~iM~P~~~v~~v~~~~t~~~a~~~m---------~~~~~s~~pVvd~---~~~lvGiit~~Di~~~~~~~~~~~~~~~~~ 86 (156)
T 3k6e_A 19 TFLTPAKNLAVLIDTHNADHATLLL---------SQMTYTRVPVVTD---EKQFVGTIGLRDIMAYQMEHDLSQEIMADT 86 (156)
T ss_dssp GGEEETTSSCCEETTSBHHHHHHHH---------TTSSSSEEEEECC----CBEEEEEEHHHHHHHHHHHTCCHHHHTTS
T ss_pred HhCcchhHeEEECCcCCHHHHHHHH---------HHcCCcEEEEEcC---CCcEEEEEEecchhhhhhhccccccccccc
Confidence 3675 34544 99999999999 9999999999998 7999999999999722 1 1112467
Q ss_pred chhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccC
Q psy1056 249 KIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRD 307 (590)
Q Consensus 249 ~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~ 307 (590)
+++++|++ +++++++++++.+|+++|.++++ +||+|++|+++|+||.+|++++..
T Consensus 87 ~v~~im~~--~~~~v~~~~~l~~~~~~m~~~~~--lpVVd~~g~l~GiiT~~Dil~~~~ 141 (156)
T 3k6e_A 87 DIVHMTKT--DVAVVSPDFTITEVLHKLVDESF--LPVVDAEGIFQGIITRKSILKAVN 141 (156)
T ss_dssp BGGGTCBC--SCCCBCTTCCHHHHHHHTTTSSE--EEEECTTSBEEEEEEHHHHHHHHH
T ss_pred CHHHhhcC--CceecccccHHHHHHHHHHHcCC--eEEEecCCEEEEEEEHHHHHHHHH
Confidence 89999999 99999999999999999988764 999999999999999999999864
|
| >1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=5.1e-15 Score=143.68 Aligned_cols=201 Identities=16% Similarity=0.119 Sum_probs=90.5
Q ss_pred HhhhcccCccccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccccccccCCCCCCCCccCCccccc
Q psy1056 16 LKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKDLSSPL 95 (590)
Q Consensus 16 ~~vk~~~~~m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Did~l~~~~~~~~~~~~~~~~~l 95 (590)
-++-.++++|.++++++++++|+.+|+++|.+++++++||+|++ ++++|++|.+|+.... ...++
T Consensus 10 ~~~~~~~~~~~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~---~~l~Givt~~dl~~~~------------~~~~v 74 (213)
T 1vr9_A 10 HHHMKVKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDRE---GHFRGVVNKEDLLDLD------------LDSSV 74 (213)
T ss_dssp ---CBGGGGCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECTT---SBEEEEEEGGGGTTSC------------TTSBS
T ss_pred ccccCHHHhhcCCCeEECCCCcHHHHHHHHHHCCCCEEEEEcCC---CEEEEEEEHHHHHhhc------------CCCcH
Confidence 34555666799999999999999999999999999999999976 7999999999432210 00000
Q ss_pred ccccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHHcCCcEEEEcCCCCchHHHHHHHHHhhhc
Q psy1056 96 TKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKE 175 (590)
Q Consensus 96 ~~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~~~~dvv~~~~~~~~~~~~~~~v~~vk~~ 175 (590)
T Consensus 75 -------------------------------------------------------------------------------- 74 (213)
T 1vr9_A 75 -------------------------------------------------------------------------------- 74 (213)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhccccccccccchhh
Q psy1056 176 YPDMQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEK 252 (590)
Q Consensus 176 ~~~~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~~~~~~~~V~~ 252 (590)
.++|..++.+ ++++.++++.| .+++++++||+|+ +++++|+||.+|+....... ..+.+
T Consensus 75 ---~~im~~~~~~v~~~~~l~~a~~~m---------~~~~~~~lpVvd~---~g~lvGiit~~Dil~~~~~~---~~~~~ 136 (213)
T 1vr9_A 75 ---FNKVSLPDFFVHEEDNITHALLLF---------LEHQEPYLPVVDE---EMRLKGAVSLHDFLEALIEA---LAMDV 136 (213)
T ss_dssp ---GGGCBCTTCCEETTSBHHHHHHHH---------HHCCCSEEEEECT---TCBEEEEEEHHHHHHHHHHS---CC---
T ss_pred ---HHHccCCCEEECCCCcHHHHHHHH---------HHhCCCEEEEEcC---CCEEEEEEEHHHHHHHHHHH---hcCCC
Confidence 1144444333 77899999999 9999999999998 69999999999998332211 22344
Q ss_pred ccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCCCCCCcccCCceEEeEeeccchhHH
Q psy1056 253 VMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREADK 332 (590)
Q Consensus 253 im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~~~~~~d~~~~l~v~a~i~~~~~~~ 332 (590)
.|.+. .+.+.....++.++.++|.+++++.+||.+.+|.- + ...+...+. ..+..
T Consensus 137 ~~~~l-~~~~~~~~~~l~~~~~~l~~~~~~~l~V~~~~~~~-~----------------------~~~v~~~v~-~~~~~ 191 (213)
T 1vr9_A 137 PGIRF-SVLLEDKPGELRKVVDALALSNINILSVITTRSGD-G----------------------KREVLIKVD-AVDEG 191 (213)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcEEE-EEEeCCCCccHHHHHHHHHHCCCcEEEEEEEecCC-C----------------------EEEEEEEEc-cCCHH
Confidence 44430 11122444569999999999999999998654331 1 001111111 12344
Q ss_pred HHHHHHHHcCCcEEEEecCCCc
Q psy1056 333 NRLKLLSQAGVDVVILDSSQGN 354 (590)
Q Consensus 333 e~~~~li~~gad~i~V~~~~G~ 354 (590)
+.++.|.+.|++++.++..+|+
T Consensus 192 ~i~~~le~~g~~v~~~~~~~g~ 213 (213)
T 1vr9_A 192 TLIKLFESLGIKIESIEKEEGF 213 (213)
T ss_dssp ----------------------
T ss_pred HHHHHHHHCCCEEEEeecccCC
Confidence 5667777888888877666653
|
| >3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.57 E-value=5.5e-15 Score=131.35 Aligned_cols=111 Identities=14% Similarity=0.185 Sum_probs=95.4
Q ss_pred ccccc--ccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCC-CeEEEEEecchhhccccccccccchhh
Q psy1056 179 MQVIG--GNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLG-EKLLGIVTSRDVDFLENSANMDLKIEK 252 (590)
Q Consensus 179 ~~im~--~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~-~~lvGivt~~Dl~~~~~~~~~~~~V~~ 252 (590)
.++|+ .++.+ ++++.+|++.| .+++++++||+++ + ++++|+||.+|+...... ...++++
T Consensus 8 ~diM~~~~~~~~v~~~~~~~~a~~~m---------~~~~~~~~pVvd~---~~~~~~Givt~~dl~~~~~~--~~~~v~~ 73 (129)
T 3jtf_A 8 ADIMVPRSRMDLLDISQPLPQLLATI---------IETAHSRFPVYED---DRDNIIGILLAKDLLRYMLE--PALDIRS 73 (129)
T ss_dssp HHHCEEGGGCCCEETTSCHHHHHHHH---------HHSCCSEEEEESS---STTCEEEEEEGGGGGGGGTC--TTSCGGG
T ss_pred HHhCccHHHeEEECCCCCHHHHHHHH---------HHcCCCEEEEEcC---CCCcEEEEEEHHHHHhHhcc--CCcCHHH
Confidence 34777 44444 89999999999 9999999999987 5 899999999999843222 2578999
Q ss_pred ccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccccc
Q psy1056 253 VMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSR 306 (590)
Q Consensus 253 im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~ 306 (590)
+|+ +++++++++++.+|+++|.+++.+.+||+|++|+++|+||.+|+++.+
T Consensus 74 ~m~---~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~g~~~Giit~~Dil~~l 124 (129)
T 3jtf_A 74 LVR---PAVFIPEVKRLNVLLREFRASRNHLAIVIDEHGGISGLVTMEDVLEQI 124 (129)
T ss_dssp GCB---CCCEEETTCBHHHHHHHHHTSSCCEEEEECC-CCEEEEEEHHHHHHHH
T ss_pred HhC---CCeEeCCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHH
Confidence 996 578999999999999999999999999999999999999999999864
|
| >3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.1e-14 Score=134.08 Aligned_cols=113 Identities=12% Similarity=0.181 Sum_probs=97.8
Q ss_pred CCCcccccc--cccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCC-CeEEEEEecchhhccccccccccc
Q psy1056 176 YPDMQVIGG--NVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLG-EKLLGIVTSRDVDFLENSANMDLK 249 (590)
Q Consensus 176 ~~~~~im~~--~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~-~~lvGivt~~Dl~~~~~~~~~~~~ 249 (590)
.+..++|+. ++.+ ++++.++++.| .+++++++||+++ + ++++|+||.+|+....... ...+
T Consensus 38 ~~v~diM~~~~~~~~v~~~~~i~~a~~~m---------~~~~~~~~pVvd~---~~~~lvGivt~~dl~~~~~~~-~~~~ 104 (156)
T 3oi8_A 38 LEVRDAMITRSRMNVLKENDSIERITAYV---------IDTAHSRFPVIGE---DKDEVLGILHAKDLLKYMFNP-EQFH 104 (156)
T ss_dssp CBGGGTCEEGGGCCCEETTCCHHHHHHHH---------HHHCCSEEEEESS---STTCEEEEEEGGGGGGGSSCG-GGCC
T ss_pred CCHhheeeeHHHeEEECCCCCHHHHHHHH---------HHCCCCEEEEEcC---CCCcEEEEEEHHHHHHHHHcC-Cccc
Confidence 556678975 4444 99999999999 9999999999997 5 4999999999998442221 4578
Q ss_pred hhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc
Q psy1056 250 IEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKK 304 (590)
Q Consensus 250 V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~ 304 (590)
++++|+ +++++++++++.+|+++|.+++++.+||+|++|+++|+||..|+++
T Consensus 105 v~~im~---~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~g~~~Givt~~Dile 156 (156)
T 3oi8_A 105 LKSILR---PAVFVPEGKSLTALLKEFREQRNHMAIVIDEYGGTSGLVTFEDIIE 156 (156)
T ss_dssp HHHHCB---CCCEEETTSBHHHHHHHHHHTTCCEEEEECTTSSEEEEEEHHHHCC
T ss_pred HHHHcC---CCEEECCCCCHHHHHHHHHhcCCeEEEEECCCCCEEEEEEHHHhcC
Confidence 999996 5789999999999999999999999999999999999999999874
|
| >1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=2.4e-15 Score=176.46 Aligned_cols=164 Identities=17% Similarity=0.141 Sum_probs=126.8
Q ss_pred hhHHHHHHHHHHhCCCceEEecccc---CcHHHHHHHHCCCCEEEEcccccccC----CCcccccc-chhHHHHHHHHHh
Q psy1056 356 IYQIEMIKFIKKEYPDMQVIGGNVL---FGYQPRATLLNFIYQIEMIKFIKKEY----PDMQVIGR-NGTAVYRVAEYAS 427 (590)
Q Consensus 356 ~~~l~~i~~i~~~~~~vpvi~g~v~---s~~~a~~l~~~Gvd~i~v~~~~~~~~----~~~~~~g~-~~~~l~~~~~~~~ 427 (590)
..+.+.++++++.+|++|+++|.+. ....|+.+.++|||+|.|+...+... ....+||. +..+|.++.+.+.
T Consensus 978 edl~~~I~~Lk~~~~~~PV~VKlv~~~gi~~~A~~a~~AGAD~IvVsG~eGGTgasp~~~~~~~G~Pt~~aL~ev~~al~ 1057 (1479)
T 1ea0_A 978 EDLAQLIYDLKQINPDAKVTVKLVSRSGIGTIAAGVAKANADIILISGNSGGTGASPQTSIKFAGLPWEMGLSEVHQVLT 1057 (1479)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEEECCTTHHHHHHHHHHTTCSEEEEECTTCCCSSEETTHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCCChHHHHHHHHHcCCcEEEEcCCCCCCCCCchhhhcCCchhHHHHHHHHHHHHH
Confidence 3457889999999989999999886 47789999999999998854322110 01245788 7788888888764
Q ss_pred cC----CCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCCC-----------CCCCceEeecCeeeeeeeccccHHHH
Q psy1056 428 RR----GVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTS-----------EAPGEYFFSDGVRLKKYRGMGSLEAM 492 (590)
Q Consensus 428 ~~----~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~~-----------es~~~~~~~~g~~~k~~~g~~s~~a~ 492 (590)
.. ++|||++|||+|+.|++|||+|||++|++|++|..+. +||..+.+++....|.|.|
T Consensus 1058 ~~glr~~VpVIAdGGIrtG~DVakALaLGAdaV~iGTafL~a~gc~~~r~Ch~~~CP~Gvatqdp~l~~~~~g------- 1130 (1479)
T 1ea0_A 1058 LNRLRHRVRLRTDGGLKTGRDIVIAAMLGAEEFGIGTASLIAMGCIMVRQCHSNTCPVGVCVQDDKLRQKFVG------- 1130 (1479)
T ss_dssp TTTCTTTSEEEEESSCCSHHHHHHHHHTTCSEEECCHHHHHHHTCCCCCCTTTTCCTTSSSCCCTTGGGSCCC-------
T ss_pred HcCCCCCceEEEECCCCCHHHHHHHHHcCCCeeeEcHHHHHHHHHHHHhhccCCCCCceeEEeCHHHHhhcCC-------
Confidence 33 5999999999999999999999999999999885543 6676665555544433322
Q ss_pred hcccCCCcccchhhhccccceeecccceeEEeeCCchhchHHHHHhhhhhhCcccCcCcHHHHHHh
Q psy1056 493 SRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRAM 558 (590)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~~~~~~~~~~~l~~~m~~~G~~~i~~l~~~ 558 (590)
| ...|.+++..|..+||..|.++|+++++||+.+
T Consensus 1131 -------------------------g-------~e~V~n~l~~l~~ELr~~Ma~lG~~si~eL~g~ 1164 (1479)
T 1ea0_A 1131 -------------------------T-------PEKVVNLFTFLAEEVREILAGLGFRSLNEVIGR 1164 (1479)
T ss_dssp -------------------------C-------HHHHHHHHHHHHHHHHHHHHHHTCSCSGGGTTC
T ss_pred -------------------------c-------hHHHHHHHHHHHHHHHHHHHHhCCCCHHHHhCc
Confidence 1 123788899999999999999999999999655
|
| >3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.5e-15 Score=133.20 Aligned_cols=116 Identities=13% Similarity=0.156 Sum_probs=100.6
Q ss_pred CCcccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhccccc-cccccchhh
Q psy1056 177 PDMQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENS-ANMDLKIEK 252 (590)
Q Consensus 177 ~~~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~~-~~~~~~V~~ 252 (590)
+..++|..++.+ ++++.++++.| .+++++++||+++ ++++|++|.+|+...... .....++++
T Consensus 6 ~v~~~m~~~~~~v~~~~~~~~a~~~~---------~~~~~~~~~Vvd~----~~~~Givt~~dl~~~~~~~~~~~~~v~~ 72 (128)
T 3gby_A 6 TFSYLAETDYPVFTLGGSTADAARRL---------AASGCACAPVLDG----ERYLGMVHLSRLLEGRKGWPTVKEKLGE 72 (128)
T ss_dssp BGGGGCBCCSCCEETTSBHHHHHHHH---------HHHTCSEEEEEET----TEEEEEEEHHHHHTTCSSSCCTTCBCCG
T ss_pred EHHHhhcCCcceECCCCCHHHHHHHH---------HHCCCcEEEEEEC----CEEEEEEEHHHHHHHHhhCCcccCcHHH
Confidence 344588877666 89999999999 9999999999996 899999999999843222 212377999
Q ss_pred ccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccC
Q psy1056 253 VMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRD 307 (590)
Q Consensus 253 im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~ 307 (590)
+|.+ +++++++++++.++++.|.+++.+.+||+|++|+++|+||..|+++...
T Consensus 73 ~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~g~~~Giit~~dll~~l~ 125 (128)
T 3gby_A 73 ELLE--TVRSYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGVVSRKRILGFLA 125 (128)
T ss_dssp GGCB--CCCCBCTTSBGGGSHHHHHHCSSSEEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred HccC--CCcEECCCCCHHHHHHHHHhCCCcEEEEECCCCCEEEEEEHHHHHHHHH
Confidence 9998 9999999999999999999999999999999999999999999998653
|
| >2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A | Back alignment and structure |
|---|
Probab=99.56 E-value=6.7e-15 Score=132.68 Aligned_cols=115 Identities=14% Similarity=0.183 Sum_probs=99.3
Q ss_pred Ccccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCC--eEEEEEecchhhcc-ccccccccchh
Q psy1056 178 DMQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGE--KLLGIVTSRDVDFL-ENSANMDLKIE 251 (590)
Q Consensus 178 ~~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~--~lvGivt~~Dl~~~-~~~~~~~~~V~ 251 (590)
..++|..++.+ ++++.++++.| .+++++.+||+|+ ++ +++|+||.+|+... ........+++
T Consensus 7 v~~im~~~~~~v~~~~~~~~a~~~~---------~~~~~~~~~Vvd~---~~~~~~~Givt~~dl~~~~~~~~~~~~~v~ 74 (141)
T 2rih_A 7 TSELLKRPPVSLPETATIREVATEL---------AKNRVGLAVLTAR---DNPKRPVAVVSERDILRAVAQRLDLDGPAM 74 (141)
T ss_dssp GGGGCCSCCEEEETTCBHHHHHHHH---------HHHTCSEEEEEET---TEEEEEEEEEEHHHHHHHHHTTCCTTSBSG
T ss_pred HHHHhcCCCeEeCCCCcHHHHHHHH---------HHcCCCEEEEEcC---CCcceeEEEEEHHHHHHHHhcCCCCCCCHH
Confidence 34578776655 88999999999 9999999999998 57 99999999999732 22222368899
Q ss_pred hccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccC
Q psy1056 252 KVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRD 307 (590)
Q Consensus 252 ~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~ 307 (590)
++|.+ ++++++++ ++.+|+++|.+++++.+||+|++|+++|+||.+|+++...
T Consensus 75 ~~m~~--~~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~ 127 (141)
T 2rih_A 75 PIANS--PITVLDTD-PVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFERA 127 (141)
T ss_dssp GGCBC--CCEEETTS-BHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSCHH
T ss_pred HHcCC--CCeEEcCC-CHHHHHHHHHHcCCeEEEEEcCCCcEEEEEEHHHHHHHHH
Confidence 99998 99999999 9999999999999999999999999999999999988643
|
| >3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.55 E-value=4.3e-15 Score=132.39 Aligned_cols=113 Identities=13% Similarity=0.177 Sum_probs=95.2
Q ss_pred ccccc--cccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhcccc--ccccccchhh
Q psy1056 180 QVIGG--NVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLEN--SANMDLKIEK 252 (590)
Q Consensus 180 ~im~~--~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~--~~~~~~~V~~ 252 (590)
++|+. ++.+ ++++.+|++.| .+++++++||+++. +++++|++|.+|++.... ......++++
T Consensus 6 ~iM~~~~~~~~v~~~~~v~~a~~~m---------~~~~~~~~pVv~~~--~~~lvGivt~~dl~~~~~~~~~~~~~~v~~ 74 (130)
T 3hf7_A 6 DIMVPRNEIVGIDINDDWKSIVRQL---------THSPHGRIVLYRDS--LDDAISMLRVREAYRLMTEKKEFTKEIMLR 74 (130)
T ss_dssp HHSEEGGGCCEEETTSCHHHHHHHH---------HTCSSSEEEEESSS--GGGEEEEEEHHHHHHHHTSSSCCCHHHHHH
T ss_pred HhCccHHHEEEEcCCCCHHHHHHHH---------HHCCCCeEEEEcCC--CCcEEEEEEHHHHHHHHhccCccchhhHHH
Confidence 47753 3433 89999999999 99999999999641 479999999999983322 2223467999
Q ss_pred ccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccccc
Q psy1056 253 VMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSR 306 (590)
Q Consensus 253 im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~ 306 (590)
+| + +++++++++++.+|+++|.+++++.+||+|++|+++|+||.+|+++..
T Consensus 75 ~m-~--~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l 125 (130)
T 3hf7_A 75 AA-D--EIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEI 125 (130)
T ss_dssp HS-B--CCCEEETTCBHHHHHHHHHHHCCCEEEEECTTSCEEEEEEHHHHHHHH
T ss_pred hc-c--CCeEeCCCCcHHHHHHHHHhcCCeEEEEEcCCCCEEEEeeHHHHHHHH
Confidence 99 4 789999999999999999999999999999999999999999999864
|
| >1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=2.9e-13 Score=147.89 Aligned_cols=273 Identities=22% Similarity=0.282 Sum_probs=174.7
Q ss_pred CcCCCCCHHHHHHHHHhhhcccCccccCCEEECCCCCHHHHHHHHHHcCccceeecc--CCcccceeEEEEecccccccc
Q psy1056 1 IIHHNCTPEYQANEVLKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTE--NGKLGEKLLGIVTSRDVDFLE 78 (590)
Q Consensus 1 ~~~~~~~~~~~~~~~~~vk~~~~~m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd--~~~~~~~lvGivT~~Did~l~ 78 (590)
+||++|+++++.+++.++++++++|..+++++++++|+.+|+++|.+++++++||+| ++ ++++|+||.+| ++.
T Consensus 72 ~i~~~~~~e~~~~~i~~v~~~~~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~---~~lvGivt~~D--l~~ 146 (491)
T 1zfj_A 72 VIHKNMSITEQAEEVRKVKRSENGVIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLAN---RKLVGIITNRD--MRF 146 (491)
T ss_dssp EECCSSCHHHHHHHHHHHHHHTTTTSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTT---CBEEEEEEHHH--HHH
T ss_pred EEeCCCCHHHHHHHHHHHhhHHhcCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCC---CEEEEEEEHHH--Hhh
Confidence 368999999999999999999999999999999999999999999999999999998 65 79999999994 431
Q ss_pred CCCCCCCCccCCcccccccccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHHcCCcEEEEcCC
Q psy1056 79 NSANMDLKIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDSS 158 (590)
Q Consensus 79 ~~~~~~~~~~~~~~~~l~~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~~~~dvv~~~~~ 158 (590)
.. +...++
T Consensus 147 ~~---------~~~~~v--------------------------------------------------------------- 154 (491)
T 1zfj_A 147 IS---------DYNAPI--------------------------------------------------------------- 154 (491)
T ss_dssp CS---------CSSSBT---------------------------------------------------------------
T ss_pred hc---------cCCCcH---------------------------------------------------------------
Confidence 00 000011
Q ss_pred CCchHHHHHHHHHhhhcCCCcccccc-cccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEec
Q psy1056 159 QGNSIYQIEMIKYIKKEYPDMQVIGG-NVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTS 234 (590)
Q Consensus 159 ~~~~~~~~~~v~~vk~~~~~~~im~~-~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~ 234 (590)
.++|+. ++.+ ++++.++++.| .++++..+||+|+ +++++|++|.
T Consensus 155 --------------------~~im~~~~~~~v~~~~~l~~a~~~m---------~~~~~~~lpVVd~---~g~lvGivt~ 202 (491)
T 1zfj_A 155 --------------------SEHMTSEHLVTAAVGTDLETAERIL---------HEHRIEKLPLVDN---SGRLSGLITI 202 (491)
T ss_dssp --------------------TTSCCCSCCCCEETTCCHHHHHHHH---------HHTTCSEEEEECT---TSBEEEEEEH
T ss_pred --------------------HHHcCCCCCEEECCCCCHHHHHHHH---------HHcCCCEEEEEcC---CCcEEEEEEH
Confidence 124443 3222 67888999999 9999999999998 7999999999
Q ss_pred chhhccccccccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCCCCCCcc
Q psy1056 235 RDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKD 314 (590)
Q Consensus 235 ~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~~~~~~d 314 (590)
.|+....... ...++......--..+.......+....+.+.+.+.+.+--..|+.-+. .+.++......
T Consensus 203 ~Dil~~~~~~---~~~~d~~~~~~vg~~i~~~~~~~~~a~~l~~~G~d~ivi~~a~g~~~~~---~~~i~~l~~~~---- 272 (491)
T 1zfj_A 203 KDIEKVIEFP---HAAKDEFGRLLVAAAVGVTSDTFERAEALFEAGADAIVIDTAHGHSAGV---LRKIAEIRAHF---- 272 (491)
T ss_dssp HHHHHHHHCT---TCCBCTTSCBCCEEEECSSTTHHHHHHHHHHHTCSEEEECCSCTTCHHH---HHHHHHHHHHC----
T ss_pred HHHHHHHhcc---ccccCcCCcEEEEEeccCchhHHHHHHHHHHcCCCeEEEeeecCcchhH---HHHHHHHHHHC----
Confidence 9998322110 0011111000011123333334455666777788876543222221110 11111111000
Q ss_pred cCCceEEeEeeccchhHHHHHHHHHHcCCcEEEEecCCCc----------hhhHHHHHHHHHH---hCCCceEEe-cccc
Q psy1056 315 ENNQLIVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGN----------SIYQIEMIKFIKK---EYPDMQVIG-GNVL 380 (590)
Q Consensus 315 ~~~~l~v~a~i~~~~~~~e~~~~li~~gad~i~V~~~~G~----------~~~~l~~i~~i~~---~~~~vpvi~-g~v~ 380 (590)
+.-.+ +..++.. .+.+..+.+.|++.+.+....|. .....+.+..+.. .. ++|+|+ |++.
T Consensus 273 p~~pv-i~G~v~t----~~~a~~~~~~Gad~I~vg~g~g~~~~tr~~~~~~~p~~~~l~~~~~~~~~~-~ipvia~GGi~ 346 (491)
T 1zfj_A 273 PNRTL-IAGNIAT----AEGARALYDAGVDVVKVGIGPGSICTTRVVAGVGVPQVTAIYDAAAVAREY-GKTIIADGGIK 346 (491)
T ss_dssp SSSCE-EEEEECS----HHHHHHHHHTTCSEEEECSSCCTTBCHHHHTCCCCCHHHHHHHHHHHHHHT-TCEEEEESCCC
T ss_pred CCCcE-eCCCccC----HHHHHHHHHcCCCEEEECccCCcceEEeeecCCCCCcHHHHHHHHHHHhhc-CCCEEeeCCCC
Confidence 01122 2333332 35666788999999987432111 0112334444443 33 789985 7888
Q ss_pred CcHHHHHHHHCCCCEEEE
Q psy1056 381 FGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 381 s~~~a~~l~~~Gvd~i~v 398 (590)
+.+++.++..+||+++-+
T Consensus 347 ~~~di~kal~~GA~~v~v 364 (491)
T 1zfj_A 347 YSGDIVKALAAGGNAVML 364 (491)
T ss_dssp SHHHHHHHHHTTCSEEEE
T ss_pred CHHHHHHHHHcCCcceee
Confidence 999999999999999955
|
| >2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} | Back alignment and structure |
|---|
Probab=99.54 E-value=6.7e-15 Score=131.89 Aligned_cols=117 Identities=22% Similarity=0.385 Sum_probs=100.4
Q ss_pred CCCcccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchh-h-ccccccccccch
Q psy1056 176 YPDMQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDV-D-FLENSANMDLKI 250 (590)
Q Consensus 176 ~~~~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl-~-~~~~~~~~~~~V 250 (590)
.+..++|..++.+ ++++.++++.| .+++++++||+|+ +++++|++|.+|+ . ..........++
T Consensus 8 ~~v~~im~~~~~~v~~~~~~~~a~~~~---------~~~~~~~~~Vvd~---~~~~~Givt~~dl~~~~~~~~~~~~~~v 75 (138)
T 2p9m_A 8 IKVKDVMTKNVITAKRHEGVVEAFEKM---------LKYKISSLPVIDD---ENKVIGIVTTTDIGYNLIRDKYTLETTI 75 (138)
T ss_dssp CBGGGTSBCSCCCEETTSBHHHHHHHH---------HHHTCCEEEEECT---TCBEEEEEEHHHHHHHHTTTCCCSSCBH
T ss_pred CCHHHhhcCCceEECCCCcHHHHHHHH---------HHCCCcEEEEECC---CCeEEEEEEHHHHHHHHHhhcccCCcCH
Confidence 4455688776655 88999999999 9999999999997 6999999999999 6 232222346789
Q ss_pred hhccccCCCeeEEcCCCCHHHHHHHHHhcC-----CCcceEEcCCCceEEEEeeccccccc
Q psy1056 251 EKVMTNVNEIISAQAGISLEEANVILEKSK-----KGKLPILNDKGELIALIARTDLKKSR 306 (590)
Q Consensus 251 ~~im~~~~~~~tv~~~~~l~ea~~~m~~~~-----~~~lpVvd~~g~l~Giit~~dll~~~ 306 (590)
+++|.+ +++++++++++.++++.|.+++ ++.+||+|++|+++|+||..|+++..
T Consensus 76 ~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~ 134 (138)
T 2p9m_A 76 GDVMTK--DVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGIISDGDIIRTI 134 (138)
T ss_dssp HHHSCS--SCCCEETTSBHHHHHHHHTCC-----CCCEEEEECTTSBEEEEEEHHHHHHHH
T ss_pred HHHhCC--CcEEECCCCCHHHHHHHHHhcCCccccccEEEEECCCCeEEEEEEHHHHHHHH
Confidence 999998 9999999999999999999999 99999999999999999999998764
|
| >2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.4e-14 Score=157.69 Aligned_cols=265 Identities=18% Similarity=0.250 Sum_probs=90.2
Q ss_pred CcCCCCCHHHHHHHHHhhhcccCccccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccccccccCC
Q psy1056 1 IIHHNCTPEYQANEVLKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENS 80 (590)
Q Consensus 1 ~~~~~~~~~~~~~~~~~vk~~~~~m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Did~l~~~ 80 (590)
+||+||+++++...+.+|+++++.|..+++++++++|+.+++++|.+++++++||+|++ +++|+||.+ |++. .
T Consensus 75 ~i~~~~~~e~~~~~I~~v~~~~~~m~~~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~~----~lvGivt~~--Dl~~-~ 147 (486)
T 2cu0_A 75 VIHRNMGIEEQVEQVKRVKRAERLIVEDVITIAPDETVDFALFLMEKHGIDGLPVVEDE----KVVGIITKK--DIAA-R 147 (486)
T ss_dssp EECSSSCHHHHHHHHHHHHTCC----------------------------------------------------------
T ss_pred eecCCCCHHHHHHHHHhhcchhhccccCceEECCCCCHHHHHHHHHHcCCcEEEEEECC----EEEEEEEHH--Hhcc-C
Confidence 47999999999999999999999999999999999999999999999999999999874 999999999 4431 0
Q ss_pred CCCCCCccCCcccccccccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHHcCCcEEEEcCCCC
Q psy1056 81 ANMDLKIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQG 160 (590)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~~~~dvv~~~~~~~ 160 (590)
...++.
T Consensus 148 ----------~~~~v~---------------------------------------------------------------- 153 (486)
T 2cu0_A 148 ----------EGKLVK---------------------------------------------------------------- 153 (486)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------CCCCHH----------------------------------------------------------------
Confidence 000000
Q ss_pred chHHHHHHHHHhhhcCCCcccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchh
Q psy1056 161 NSIYQIEMIKYIKKEYPDMQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDV 237 (590)
Q Consensus 161 ~~~~~~~~v~~vk~~~~~~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl 237 (590)
++|+.++.+ ++++.++++.| .++++..+||+|+ +++++|++|.+|+
T Consensus 154 -------------------~im~~~~~~v~~~~~l~eal~~m---------~~~~~~~lpVVde---~g~lvGiiT~~Di 202 (486)
T 2cu0_A 154 -------------------ELMTKEVITVPESIEVEEALKIM---------IENRIDRLPVVDE---RGKLVGLITMSDL 202 (486)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------------------HHccCCCeEECCcCcHHHHHHHH---------HHcCCCEEEEEec---CCeEEEEEEHHHH
Confidence 122222211 67788899999 9999999999998 7999999999999
Q ss_pred hccccccccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCCCCCCcccCC
Q psy1056 238 DFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENN 317 (590)
Q Consensus 238 ~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~~~~~~d~~~ 317 (590)
....... ...++.+....-...+..++ .+.+..|.+.+.+.++|-...|...++++.-..++... .-
T Consensus 203 l~~~~~~---~~~~~~~g~~~v~~~~~~~~--~~~a~~l~~~gvd~lvvdta~G~~~~~L~~I~~l~~~~--------~v 269 (486)
T 2cu0_A 203 VARKKYK---NAVRDENGELLVAAAVSPFD--IKRAIELDKAGVDVIVVDTAHAHNLKAIKSMKEMRQKV--------DA 269 (486)
T ss_dssp ----CCT---TCCBCTTSCBCCEEEECTTC--HHHHHHHHHTTCSEEEEECSCCCCHHHHHHHHHHHHTC--------CS
T ss_pred HHhhhcc---ccccccCCceeecceechhh--HHHHHHHHHhcCCceEEEecCCcEeehhhHHHHHHHHh--------CC
Confidence 8443211 11122111100011233333 55677888899887644334566555554322222211 01
Q ss_pred ceEEeEeeccchhHHHHHHHHHHcCCcEEEEecCC------------Cch-hhHHHHHHHHHHhCCCceEEe-ccccCcH
Q psy1056 318 QLIVGAAIGTREADKNRLKLLSQAGVDVVILDSSQ------------GNS-IYQIEMIKFIKKEYPDMQVIG-GNVLFGY 383 (590)
Q Consensus 318 ~l~v~a~i~~~~~~~e~~~~li~~gad~i~V~~~~------------G~~-~~~l~~i~~i~~~~~~vpvi~-g~v~s~~ 383 (590)
. ++.-+++. .+.+..+. |++.+.+.... |.+ ...+..+..+...+ ++|||+ |++.+..
T Consensus 270 p-vi~k~v~~----~~~a~~l~--G~d~v~vg~g~g~~~~~r~~~~~g~~~~~~l~~~~~~~~~~-~vpVia~GGi~~~~ 341 (486)
T 2cu0_A 270 D-FIVGNIAN----PKAVDDLT--FADAVKVGIGPGSICTTRIVAGVGVPQITAVAMVADRAQEY-GLYVIADGGIRYSG 341 (486)
T ss_dssp E-EEEEEECC----HHHHTTCT--TSSEEEECSSCSTTBCHHHHTCCCCCHHHHHHHHHHHHHHH-TCEEEEESCCCSHH
T ss_pred c-cccCCcCC----HHHHHHhh--CCCeEEEeeeeccceeeeEEeecCcchHHHHHHHHHHHHHc-CCcEEecCCCCCHH
Confidence 1 23334442 23333444 99998873211 111 12234445555555 789985 7788999
Q ss_pred HHHHHHHCCCCEEEE
Q psy1056 384 QPRATLLNFIYQIEM 398 (590)
Q Consensus 384 ~a~~l~~~Gvd~i~v 398 (590)
++.+++.+|||++-+
T Consensus 342 di~kalalGA~~v~~ 356 (486)
T 2cu0_A 342 DIVKAIAAGADAVML 356 (486)
T ss_dssp HHHHHHHTTCSEEEE
T ss_pred HHHHHHHcCCCceee
Confidence 999999999999966
|
| >3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=6e-15 Score=129.23 Aligned_cols=112 Identities=18% Similarity=0.317 Sum_probs=98.4
Q ss_pred ccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhccccccccccchhhcccc
Q psy1056 180 QVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTN 256 (590)
Q Consensus 180 ~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~ 256 (590)
++|..++.+ ++++.++++.| .+++++.+||+++ +++++|++|.+|+....... ..++.++|.+
T Consensus 5 ~im~~~~~~v~~~~~~~~a~~~~---------~~~~~~~~~Vvd~---~~~~~G~vt~~dl~~~~~~~--~~~v~~~~~~ 70 (122)
T 3kpb_A 5 DILSKPPITAHSNISIMEAAKIL---------IKHNINHLPIVDE---HGKLVGIITSWDIAKALAQN--KKTIEEIMTR 70 (122)
T ss_dssp HHCCSCCCCEETTSBHHHHHHHH---------HHHTCSCEEEECT---TSBEEEEECHHHHHHHHHTT--CCBGGGTSBS
T ss_pred HhhCCCCEEeCCCCcHHHHHHHH---------HHcCCCeEEEECC---CCCEEEEEEHHHHHHHHHhc--ccCHHHHhcC
Confidence 367766655 88999999999 9999999999997 69999999999998332211 2589999998
Q ss_pred CCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccC
Q psy1056 257 VNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRD 307 (590)
Q Consensus 257 ~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~ 307 (590)
+++++++++++.+++++|.+++.+.+||+|++|+++|+||.+|+++...
T Consensus 71 --~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Givt~~dl~~~l~ 119 (122)
T 3kpb_A 71 --NVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDISRLFG 119 (122)
T ss_dssp --SCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHC
T ss_pred --CCeEECCCCCHHHHHHHHHHhCCCeEEEECCCCCEEEEEeHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999998754
|
| >3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni} | Back alignment and structure |
|---|
Probab=99.53 E-value=6.5e-15 Score=134.94 Aligned_cols=118 Identities=14% Similarity=0.186 Sum_probs=99.8
Q ss_pred CCCcccccc--cccc---hHHHHHHHHHhccccccccccccCceeeEEe-eCCCCCCeEEEEEecchhhccccccccccc
Q psy1056 176 YPDMQVIGG--NVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVT-ENGKLGEKLLGIVTSRDVDFLENSANMDLK 249 (590)
Q Consensus 176 ~~~~~im~~--~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVv-d~~~~~~~lvGivt~~Dl~~~~~~~~~~~~ 249 (590)
.+..++|+. ++.+ ++++.+|++.| .+++++++||+ ++. +++++|+||.+|+....... ...+
T Consensus 20 ~~v~~iM~~~~~~~~v~~~~~~~~a~~~m---------~~~~~~~~pVv~d~~--~~~lvGivt~~dl~~~~~~~-~~~~ 87 (153)
T 3oco_A 20 KVASDVMVDRTSMSVVDVDETIADALLLY---------LEEQYSRFPVTADND--KDKIIGYAYNYDIVRQARID-DKAK 87 (153)
T ss_dssp CBHHHHSEEGGGCCCEETTSBHHHHHHHH---------HHHCCSEEEEEETTE--EEEEEEEEEHHHHHHHHHHH-TTSB
T ss_pred CEeeeEecchhheEEEcCCCCHHHHHHHH---------HhCCCCEEEEEECCC--CCcEEEEEEHHHHHhHHhcC-CCCc
Confidence 445568874 5544 89999999999 99999999999 530 38999999999998332111 2578
Q ss_pred hhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCC
Q psy1056 250 IEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDY 308 (590)
Q Consensus 250 V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~ 308 (590)
++++| + +++++++++++.+|+++|.+++++.+||+|++|+++|+||..|+++....
T Consensus 88 v~~~m-~--~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~~vGivt~~dil~~l~~ 143 (153)
T 3oco_A 88 ISTIM-R--DIVSVPENMKVPDVMEEMSAHRVPMAIVIDEYGGTSGIITDKDVYEELFG 143 (153)
T ss_dssp GGGTC-B--CCEEEETTSBHHHHHHHHHHTTCSCEEEECTTSCEEEEECHHHHHHHHHC
T ss_pred HHHHh-C--CCeEECCCCCHHHHHHHHHHcCCcEEEEEeCCCCEEEEeeHHHHHHHHhc
Confidence 99999 7 89999999999999999999999999999999999999999999987653
|
| >3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=7.9e-15 Score=135.27 Aligned_cols=120 Identities=15% Similarity=0.149 Sum_probs=103.7
Q ss_pred CCCcccccccccc--hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhcc--ccccccccchh
Q psy1056 176 YPDMQVIGGNVVT--TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFL--ENSANMDLKIE 251 (590)
Q Consensus 176 ~~~~~im~~~~~~--~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~--~~~~~~~~~V~ 251 (590)
.+..++|..+++. ++++.+|++.| .+++++++||+|+ +++++|+||.+|+... ........++.
T Consensus 17 ~~v~~im~~~~~v~~~~~~~~a~~~m---------~~~~~~~~~Vvd~---~~~~~Givt~~dl~~~~~~~~~~~~~~v~ 84 (159)
T 3fv6_A 17 LQVKDFQSIPVVIHENVSVYDAICTM---------FLEDVGTLFVVDR---DAVLVGVLSRKDLLRASIGQQELTSVPVH 84 (159)
T ss_dssp CBGGGSCBCCCEEETTSBHHHHHHHH---------HHHTCSEEEEECT---TSCEEEEEEHHHHHHHHTSCSCTTTCBGG
T ss_pred CCHHHHcCCCEEECCCCcHHHHHHHH---------HHCCCCEEEEEcC---CCcEEEEEeHHHHHHHhhccCcccCcCHH
Confidence 5566789876644 89999999999 9999999999997 6999999999999832 22333468899
Q ss_pred hccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCC---ceEEEEeecccccccC
Q psy1056 252 KVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKG---ELIALIARTDLKKSRD 307 (590)
Q Consensus 252 ~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g---~l~Giit~~dll~~~~ 307 (590)
++|++..+++++++++++.+|+++|.+++++.+||+|++| +++|+||.+||++.+.
T Consensus 85 ~~m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~~~vGiit~~dil~~l~ 143 (159)
T 3fv6_A 85 IIMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMTKILV 143 (159)
T ss_dssp GTSEETTSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEECSSSEEEEEEEEHHHHHHHHH
T ss_pred HHHcCCCCcEEECCCCCHHHHHHHHHHcCCcEEEEEeCCCcceeEEEEEEHHHHHHHHH
Confidence 9998645788999999999999999999999999999888 9999999999998754
|
| >3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.2e-14 Score=132.45 Aligned_cols=114 Identities=13% Similarity=0.172 Sum_probs=99.3
Q ss_pred CCcccccc--cccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhcc--ccccccccc
Q psy1056 177 PDMQVIGG--NVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFL--ENSANMDLK 249 (590)
Q Consensus 177 ~~~~im~~--~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~--~~~~~~~~~ 249 (590)
+..++|.. ++.+ ++++.++++.| .+++++.+||+|+ +++++|+||.+|+... ........+
T Consensus 29 ~v~dim~~~~~~~~v~~~~~~~~a~~~m---------~~~~~~~~~Vvd~---~~~~~Givt~~dl~~~~~~~~~~~~~~ 96 (149)
T 3k2v_A 29 RVNDIMHTGDEIPHVGLQATLRDALLEI---------TRKNLGMTAICDD---DMNIIGIFTDGDLRRVFDTGVDMRDAS 96 (149)
T ss_dssp BGGGTSBCGGGSCEECTTCBHHHHHHHH---------HHHTSSEEEEECT---TCBEEEEEEHHHHHHHHCSSSCCTTCB
T ss_pred CHHHHhcCCCCCeEECCCCcHHHHHHHH---------HhCCCcEEEEECC---CCcEEEEecHHHHHHHHhcCCCcccCc
Confidence 44568887 6655 88999999999 9999999999997 6999999999999832 222235689
Q ss_pred hhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccc
Q psy1056 250 IEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKS 305 (590)
Q Consensus 250 V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~ 305 (590)
++++|++ +++++++++++.+|+++|.+++++.+||+|++ +++|+||..||+++
T Consensus 97 v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-~~~Giit~~dil~a 149 (149)
T 3k2v_A 97 IADVMTR--GGIRIRPGTLAVDALNLMQSRHITCVLVADGD-HLLGVVHMHDLLRA 149 (149)
T ss_dssp HHHHSEE--SCCEECTTCBHHHHHHHHHHHTCSEEEEEETT-EEEEEEEHHHHTCC
T ss_pred HHHHcCC--CCeEECCCCCHHHHHHHHHHcCCCEEEEecCC-EEEEEEEHHHhhcC
Confidence 9999998 99999999999999999999999999999976 99999999999863
|
| >4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.3e-14 Score=135.50 Aligned_cols=133 Identities=26% Similarity=0.298 Sum_probs=94.0
Q ss_pred CccccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccccccccCCCCCCCCccCCcccccccccccC
Q psy1056 23 HGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKDLSSPLTKKITLA 102 (590)
Q Consensus 23 ~~m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Did~l~~~~~~~~~~~~~~~~~l~~~~~~~ 102 (590)
++|+++++++++++|+.+|+++|.+++++++||+|++ |+++|+||.+| ++..... ....
T Consensus 22 diM~~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~---g~lvGiit~~D--ll~~~~~----------~~~~------ 80 (170)
T 4esy_A 22 DILTSPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQN---GHLVGIITESD--FLRGSIP----------FWIY------ 80 (170)
T ss_dssp GGCCSCCCCEETTSBHHHHHHHHHHTTCSEEEEECTT---SCEEEEEEGGG--GGGGTCC----------TTHH------
T ss_pred HhcCCCCcEECCcCcHHHHHHHHHHcCCeEEEEEcCC---ccEEEEEEHHH--HHHHHhh----------cccc------
Confidence 4499999999999999999999999999999999987 89999999995 4321000 0000
Q ss_pred CceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHHcCCcEEEEcCCCCchHHHHHHHHHhhhcCCCcccc
Q psy1056 103 APLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVI 182 (590)
Q Consensus 103 ~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~im 182 (590)
. ... . .. .... ........+.... .+..++|
T Consensus 81 ------------~-~~~--~-~~-------~~~~-------------------------~~~~~~~~~~~~~-~~v~~im 111 (170)
T 4esy_A 81 ------------E-ASE--I-LS-------RAIP-------------------------APEVEHLFETGRK-LTASAVM 111 (170)
T ss_dssp ------------H-HHH--H-HT-------TTSC-------------------------HHHHHHHHHHHTT-CBHHHHC
T ss_pred ------------c-hhh--h-hh-------hccc-------------------------hhhHHhhhccccc-cchhhhc
Confidence 0 000 0 00 0000 0001111112222 4445689
Q ss_pred cccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhh
Q psy1056 183 GGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVD 238 (590)
Q Consensus 183 ~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~ 238 (590)
+.++.+ ++++.++++.| .+++++++||+|+ |+++||||.+|+.
T Consensus 112 ~~~~~tv~~~~~l~~a~~~m---------~~~~~~~lpVvd~----g~lvGivt~~Dil 157 (170)
T 4esy_A 112 TQPVVTAAPEDSVGSIADQM---------RRHGIHRIPVVQD----GVPVGIVTRRDLL 157 (170)
T ss_dssp BCCSCCBCTTSBHHHHHHHH---------HHTTCSEEEEEET----TEEEEEEEHHHHT
T ss_pred ccCcccCCcchhHHHHHHHH---------HHcCCcEEEEEEC----CEEEEEEEHHHHH
Confidence 888776 89999999999 9999999999986 8999999999997
|
| >1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=5e-15 Score=174.10 Aligned_cols=163 Identities=18% Similarity=0.165 Sum_probs=123.2
Q ss_pred hHHHHHHHHHHhCCCceEEecccc---CcHHHHHHHHCCCCEEEEcccccccCC----Ccccccc-chhHHHHHHHHHhc
Q psy1056 357 YQIEMIKFIKKEYPDMQVIGGNVL---FGYQPRATLLNFIYQIEMIKFIKKEYP----DMQVIGR-NGTAVYRVAEYASR 428 (590)
Q Consensus 357 ~~l~~i~~i~~~~~~vpvi~g~v~---s~~~a~~l~~~Gvd~i~v~~~~~~~~~----~~~~~g~-~~~~l~~~~~~~~~ 428 (590)
.+.+.++++++.+|++||++|.+. ....|+.+.++|||+|.|+...+.... ...+||. +..+|.++.+.+..
T Consensus 1014 dl~~~I~~Lk~~~~~~PV~VKlv~~~gi~~~A~~a~kAGAD~IvVsG~eGGTgasp~~~~~~~GlPt~~aL~ev~~al~~ 1093 (1520)
T 1ofd_A 1014 DLAQLIYDLHQINPEAQVSVKLVAEIGIGTIAAGVAKANADIIQISGHDGGTGASPLSSIKHAGSPWELGVTEVHRVLME 1093 (1520)
T ss_dssp HHHHHHHHHHHHCTTSEEEEEEECSTTHHHHHHHHHHTTCSEEEEECTTCCCSSEEHHHHHHBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCEEEEecCCCChHHHHHHHHHcCCCEEEEeCCCCccCCCcchhhcCCchhHHHHHHHHHHHHHh
Confidence 357889999999989999999885 468899999999999988544321100 0245788 88888888877643
Q ss_pred C----CCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCCC-----------CCCCceEeecCeeeeeeeccccHHHHh
Q psy1056 429 R----GVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTS-----------EAPGEYFFSDGVRLKKYRGMGSLEAMS 493 (590)
Q Consensus 429 ~----~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~~-----------es~~~~~~~~g~~~k~~~g~~s~~a~~ 493 (590)
. ++|||++|||+|+.|++|||+|||++|++|++|+.+. +||..+..++....|.|.|
T Consensus 1094 ~glr~~IpVIAdGGIrtG~DVakALaLGAdaV~iGTafL~algc~~~r~Ch~~~CP~Gvatqdp~L~~~~~g-------- 1165 (1520)
T 1ofd_A 1094 NQLRDRVLLRADGGLKTGWDVVMAALMGAEEYGFGSIAMIAEGCIMARVCHTNNCPVGVATQQERLRQRFKG-------- 1165 (1520)
T ss_dssp TTCGGGCEEEEESSCCSHHHHHHHHHTTCSEEECSHHHHHHTTCCCCCCGGGTCCTTSSSCCCHHHHTTCCC--------
T ss_pred cCCCCCceEEEECCCCCHHHHHHHHHcCCCeeEEcHHHHHHHHHHHHHhccCCCCCceeEeeCHHHHhhcCC--------
Confidence 2 4999999999999999999999999999999986655 4454433333222221111
Q ss_pred cccCCCcccchhhhccccceeecccceeEEeeCCchhchHHHHHhhhhhhCcccCcCcHHHHHHh
Q psy1056 494 RKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRAM 558 (590)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~~~~~~~~~~~l~~~m~~~G~~~i~~l~~~ 558 (590)
| ...|.++++.|..+||..|.++|+++++||+.+
T Consensus 1166 ------------------------g-------~e~V~n~l~~l~~ELr~~Ma~lG~~si~eL~gr 1199 (1520)
T 1ofd_A 1166 ------------------------V-------PGQVVNFFYFIAEEVRSLLAHLGYRSLDDIIGR 1199 (1520)
T ss_dssp ------------------------C-------HHHHHHHHHHHHHHHHHHHHHHTCSCGGGTTTC
T ss_pred ------------------------c-------HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHhCc
Confidence 1 224888899999999999999999999999643
|
| >3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.8e-14 Score=137.69 Aligned_cols=126 Identities=16% Similarity=0.149 Sum_probs=108.2
Q ss_pred HHHHHHHHHhhhcCC---Ccccccccccc---hHHHHHHHHHhcccccccccccc---CceeeEEeeCCCCCCeEEEEEe
Q psy1056 163 IYQIEMIKYIKKEYP---DMQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCH---GFCGFPVTENGKLGEKLLGIVT 233 (590)
Q Consensus 163 ~~~~~~v~~vk~~~~---~~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~---~~~~~pVvd~~~~~~~lvGivt 233 (590)
....+.++.+.. ++ +.++|+.++.+ +.|+.++++.| .++ +++.+||+|+ +++++|+||
T Consensus 39 ~~e~~~i~~~l~-~~~~~v~~iM~~~~~~v~~~~tv~eal~~~---------~~~~~~~~~~~~Vvd~---~~~lvGivt 105 (205)
T 3kxr_A 39 ERQRQRFELYDQ-YSENEIGRYTDHQMLVLSDKATVAQAQRFF---------RRIELDCNDNLFIVDE---ADKYLGTVR 105 (205)
T ss_dssp HHHHHHHHHHHH-SCTTCGGGGCBCCCCEEETTCBHHHHHHHH---------HHCCCTTCCEEEEECT---TCBEEEEEE
T ss_pred HHHHHHHHHHhC-CCcchHHhhccCceEEECCCCcHHHHHHHH---------HhhCccCeeEEEEEcC---CCeEEEEEE
Confidence 345555665555 54 46789888766 89999999999 776 7899999998 799999999
Q ss_pred cchhhccccccccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccC
Q psy1056 234 SRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRD 307 (590)
Q Consensus 234 ~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~ 307 (590)
.+|+.... ...+++++|++ +++++++++++.+|+++|.+++++.+||+|++|+++|+||..|+++...
T Consensus 106 ~~dll~~~----~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~~g~lvGiIT~~Dil~~i~ 173 (205)
T 3kxr_A 106 RYDIFKHE----PHEPLISLLSE--DSRALTANTTLLDAAEAIEHSREIELPVIDDAGELIGRVTLRAATALVR 173 (205)
T ss_dssp HHHHTTSC----TTSBGGGGCCS--SCCCEETTSCHHHHHHHHHTSSCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred HHHHHhCC----CcchHHHHhcC--CCeEECCCCCHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHHH
Confidence 99997542 34789999998 9999999999999999999999999999999999999999999998754
|
| >4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.1e-14 Score=132.31 Aligned_cols=119 Identities=23% Similarity=0.365 Sum_probs=100.9
Q ss_pred CCCcccccc--cccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhcccc--------
Q psy1056 176 YPDMQVIGG--NVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLEN-------- 242 (590)
Q Consensus 176 ~~~~~im~~--~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~-------- 242 (590)
.+..++|.. ++.+ ++++.++++.| .+++++++||+|+ +++++|++|.+|+.....
T Consensus 5 ~~v~~im~~~~~~~~v~~~~~~~~a~~~~---------~~~~~~~~~Vvd~---~~~~~G~vt~~dl~~~~~~~~~~~~~ 72 (152)
T 4gqw_A 5 YTVGEFMTKKEDLHVVKPTTTVDEALELL---------VENRITGFPVIDE---DWKLVGLVSDYDLLALDSGDSTWKTF 72 (152)
T ss_dssp SBGGGTSEESTTCCCBCTTSBHHHHHHHH---------HHTTCSEEEEECT---TCBEEEEEEHHHHTTCC----CCHHH
T ss_pred EEhhhccCCCCCCeEECCCCcHHHHHHHH---------HHcCCceEEEEeC---CCeEEEEEEHHHHHHhhcccCcccch
Confidence 344568877 4544 89999999999 9999999999998 689999999999973210
Q ss_pred -------ccccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCC
Q psy1056 243 -------SANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDY 308 (590)
Q Consensus 243 -------~~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~ 308 (590)
......++.++|.+ +++++++++++.+|+++|.+++++.+||+|++|+++|+||.+|+++....
T Consensus 73 ~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Giit~~dil~~~~~ 143 (152)
T 4gqw_A 73 NAVQKLLSKTNGKLVGDLMTP--APLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITRGNVVRAALQ 143 (152)
T ss_dssp HHHHTC-----CCBHHHHSEE--SCCCEESSSBHHHHHHHHHHSSCCEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred HHHHHHHHHhccccHHHhcCC--CceEECCCCcHHHHHHHHHHCCCCEEEEECCCCcEEEEEEHHHHHHHHHh
Confidence 11235789999998 89999999999999999999999999999999999999999999997653
|
| >2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=1.2e-14 Score=129.49 Aligned_cols=116 Identities=20% Similarity=0.337 Sum_probs=99.9
Q ss_pred CCcccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhcc-ccccccccchhh
Q psy1056 177 PDMQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFL-ENSANMDLKIEK 252 (590)
Q Consensus 177 ~~~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~-~~~~~~~~~V~~ 252 (590)
+..++|..++.+ ++++.++++.| .+++++.+||+++ ++++|++|.+|+... ........++++
T Consensus 5 ~v~~im~~~~~~v~~~~~~~~a~~~~---------~~~~~~~~~Vvd~----~~~~Givt~~dl~~~~~~~~~~~~~v~~ 71 (133)
T 2ef7_A 5 IVKEYMKTQVISVTKDAKLNDIAKVM---------TEKNIGSVIVVDG----NKPVGIITERDIVKAIGKGKSLETKAEE 71 (133)
T ss_dssp BGGGTSBCSCCEEETTCBHHHHHHHH---------HHHTCSEEEEEET----TEEEEEEEHHHHHHHHHTTCCTTCBGGG
T ss_pred cHHHhccCCCEEECCCCcHHHHHHHH---------HhcCCCEEEEEEC----CEEEEEEcHHHHHHHHhcCCCcccCHHH
Confidence 344578776555 88999999999 9999999999995 899999999999732 222223578999
Q ss_pred ccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccC
Q psy1056 253 VMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRD 307 (590)
Q Consensus 253 im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~ 307 (590)
+|.+ +++++++++++.++++.|.+++.+.+||+|++|+++|+||..|+++...
T Consensus 72 ~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~ 124 (133)
T 2ef7_A 72 FMTA--SLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAID 124 (133)
T ss_dssp TSEE--CCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred HcCC--CCEEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHH
Confidence 9998 9999999999999999999999999999999999999999999998654
|
| >3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0 | Back alignment and structure |
|---|
Probab=99.50 E-value=2.4e-14 Score=130.37 Aligned_cols=116 Identities=16% Similarity=0.135 Sum_probs=98.7
Q ss_pred CCCccccc--ccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhccc-c------c
Q psy1056 176 YPDMQVIG--GNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLE-N------S 243 (590)
Q Consensus 176 ~~~~~im~--~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~-~------~ 243 (590)
.+..++|. .++.+ ++++.+|++.| .+++++++||+|+ +++++|+||.+|+.... . .
T Consensus 15 ~~v~~im~~~~~~~~v~~~~~l~~a~~~~---------~~~~~~~~pVvd~---~~~~~Givt~~dl~~~~~~~~~~~~~ 82 (150)
T 3lqn_A 15 IFVKDLMISSEKVAHVQIGNGLEHALLVL---------VKSGYSAIPVLDP---MYKLHGLISTAMILDGILGLERIEFE 82 (150)
T ss_dssp CBHHHHSEEGGGSCCBCTTSBHHHHHHHH---------HHHTCSEEEEECT---TCBEEEEEEHHHHHHHTBCSSSBCGG
T ss_pred CChhhcccCCCceEEECCCCcHHHHHHHH---------HHcCCcEEEEECC---CCCEEEEEEHHHHHHHHHhhcccchh
Confidence 44456887 34544 88999999999 9999999999997 69999999999997221 1 1
Q ss_pred cccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccC
Q psy1056 244 ANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRD 307 (590)
Q Consensus 244 ~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~ 307 (590)
.....++.++|.+ +++++++++++.+|+++|.++++ +||+|++|+++|+||..|+++...
T Consensus 83 ~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~~g~~~Giit~~dil~~l~ 142 (150)
T 3lqn_A 83 RLEEMKVEQVMKQ--DIPVLKLEDSFAKALEMTIDHPF--ICAVNEDGYFEGILTRRAILKLLN 142 (150)
T ss_dssp GGGGCBGGGTCBS--SCCEEETTCBHHHHHHHHHHCSE--EEEECTTCBEEEEEEHHHHHHHHH
T ss_pred HHhcCCHHHHhcC--CCceeCCCCCHHHHHHHHHhCCE--EEEECCCCcEEEEEEHHHHHHHHH
Confidence 2246889999998 99999999999999999999987 999999999999999999998754
|
| >2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=2.6e-14 Score=128.13 Aligned_cols=117 Identities=14% Similarity=0.270 Sum_probs=101.0
Q ss_pred CCcccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhh--ccccccccccchh
Q psy1056 177 PDMQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVD--FLENSANMDLKIE 251 (590)
Q Consensus 177 ~~~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~--~~~~~~~~~~~V~ 251 (590)
+..++|..++.+ ++++.++++.| .+++++.+||+|+ +++++|+||.+|+. ..........++.
T Consensus 8 ~v~~im~~~~~~v~~~~~~~~a~~~~---------~~~~~~~~~Vvd~---~~~~~Givt~~dl~~~~~~~~~~~~~~v~ 75 (138)
T 2yzi_A 8 PIKVYMTKKLLGVKPSTSVQEASRLM---------MEFDVGSLVVIND---DGNVVGFFTKSDIIRRVIVPGLPYDIPVE 75 (138)
T ss_dssp BGGGTCBCCCCEECTTSBHHHHHHHH---------HHHTCSEEEEECT---TSCEEEEEEHHHHHHHTTTTCCCTTSBGG
T ss_pred hHHHHhcCCCeEECCCCcHHHHHHHH---------HHcCCCEEEEEcC---CCcEEEEEeHHHHHHHHHhcCCcccCCHH
Confidence 344578776655 88999999999 9999999999997 69999999999995 2322223468899
Q ss_pred hccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCC
Q psy1056 252 KVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDY 308 (590)
Q Consensus 252 ~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~ 308 (590)
++|.+ +++++++++++.+|+++|.+++++++ |+|++|+++|+||..|+++....
T Consensus 76 ~~m~~--~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~~g~~~Giit~~dil~~~~~ 129 (138)
T 2yzi_A 76 RIMTR--NLITANVNTPLGEVLRKMAEHRIKHI-LIEEEGKIVGIFTLSDLLEASRR 129 (138)
T ss_dssp GTCBC--SCCEEETTSBHHHHHHHHHHHTCSEE-EEEETTEEEEEEEHHHHHHHHHC
T ss_pred HHhhC--CCeEECCCCcHHHHHHHHHhcCCCEE-EECCCCCEEEEEEHHHHHHHHHH
Confidence 99998 99999999999999999999999999 99989999999999999987653
|
| >1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A | Back alignment and structure |
|---|
Probab=99.50 E-value=2.1e-14 Score=127.81 Aligned_cols=114 Identities=15% Similarity=0.308 Sum_probs=98.4
Q ss_pred cccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhh--cccc-ccccccchhh
Q psy1056 179 MQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVD--FLEN-SANMDLKIEK 252 (590)
Q Consensus 179 ~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~--~~~~-~~~~~~~V~~ 252 (590)
.++|..++.+ ++++.++++.| .+++++++||+|+ +++++|++|.+|+. .... ......++++
T Consensus 11 ~~im~~~~~~v~~~~~~~~a~~~~---------~~~~~~~~~Vvd~---~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~ 78 (133)
T 1y5h_A 11 RDIMNAGVTCVGEHETLTAAAQYM---------REHDIGALPICGD---DDRLHGMLTDRDIVIKGLAAGLDPNTATAGE 78 (133)
T ss_dssp HHHSEETCCCEETTSBHHHHHHHH---------HHHTCSEEEEECG---GGBEEEEEEHHHHHHTTGGGTCCTTTSBHHH
T ss_pred HHHhcCCceEeCCCCCHHHHHHHH---------HHhCCCeEEEECC---CCeEEEEEeHHHHHHHHHhcCCCccccCHHH
Confidence 3477766555 88999999999 9999999999987 69999999999997 2222 2223588999
Q ss_pred ccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccC
Q psy1056 253 VMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRD 307 (590)
Q Consensus 253 im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~ 307 (590)
+|.+ +++++++++++.+++++|.+++.+.+||+|+ |+++|+||.+|+++...
T Consensus 79 ~m~~--~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-g~~~Giit~~dil~~l~ 130 (133)
T 1y5h_A 79 LARD--SIYYVDANASIQEMLNVMEEHQVRRVPVISE-HRLVGIVTEADIARHLP 130 (133)
T ss_dssp HHTT--CCCCEETTCCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHTCC
T ss_pred HhcC--CCEEECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHHH
Confidence 9998 9999999999999999999999999999998 99999999999998753
|
| >1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=2.6e-14 Score=125.57 Aligned_cols=112 Identities=22% Similarity=0.252 Sum_probs=97.2
Q ss_pred ccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhcc--ccccccccchhhcc
Q psy1056 180 QVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFL--ENSANMDLKIEKVM 254 (590)
Q Consensus 180 ~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~--~~~~~~~~~V~~im 254 (590)
++|..++.+ ++++.++++.| .+++++.+||+|+ ++++|++|.+|+... ........++.++|
T Consensus 5 ~~m~~~~~~v~~~~~~~~a~~~~---------~~~~~~~~~Vvd~----~~~~G~it~~dl~~~~~~~~~~~~~~v~~~m 71 (125)
T 1pbj_A 5 DVMVTDVDTIDITASLEDVLRNY---------VENAKGSSVVVKE----GVRVGIVTTWDVLEAIAEGDDLAEVKVWEVM 71 (125)
T ss_dssp HHCBCSCCEEETTCBHHHHHHHH---------HHHCCCEEEEEET----TEEEEEEEHHHHHHHHHHTCCTTTSBHHHHC
T ss_pred HhcCCCceEECCCCcHHHHHHHH---------HHcCCCEEEEEeC----CeeEEEEeHHHHHHHHhcCCcccccCHHHHc
Confidence 367666554 88999999999 9999999999995 999999999999732 22222468899999
Q ss_pred ccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccC
Q psy1056 255 TNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRD 307 (590)
Q Consensus 255 ~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~ 307 (590)
.+ +++++++++++.++++.|.+++++.+||+|+ |+++|+||.+|+++...
T Consensus 72 ~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~~~~Gvit~~dl~~~l~ 121 (125)
T 1pbj_A 72 ER--DLVTISPRATIKEAAEKMVKNVVWRLLVEED-DEIIGVISATDILRAKM 121 (125)
T ss_dssp BC--GGGEECTTSCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHHC
T ss_pred CC--CCeEECCCCCHHHHHHHHHhcCCcEEEEEEC-CEEEEEEEHHHHHHHHH
Confidence 98 9999999999999999999999999999998 99999999999998754
|
| >3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.49 E-value=5.1e-14 Score=132.03 Aligned_cols=117 Identities=14% Similarity=0.133 Sum_probs=98.4
Q ss_pred CCCcccccc--cccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCC-CeEEEEEecchhhccccccccccc
Q psy1056 176 YPDMQVIGG--NVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLG-EKLLGIVTSRDVDFLENSANMDLK 249 (590)
Q Consensus 176 ~~~~~im~~--~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~-~~lvGivt~~Dl~~~~~~~~~~~~ 249 (590)
.+..++|+. ++.+ ++++.++++.| .+++++++||+++ + ++++|+||.+|++...... ...+
T Consensus 36 ~~v~diM~~~~~v~~v~~~~tv~ea~~~m---------~~~~~~~~pVvd~---~~~~lvGivt~~Dl~~~~~~~-~~~~ 102 (173)
T 3ocm_A 36 RSIRSIMTPRTDVSWVNIDDDAATIRQQL---------TAAPHSFFPVCRG---SLDEVVGIGRAKDLVADLITE-GRVR 102 (173)
T ss_dssp SCSTTTSEEGGGCCCEETTSCHHHHHHHH---------HHSSCSEEEEESS---STTSEEEEEEHHHHHHHHHHH-SSCC
T ss_pred CCHHHhCCcHHHeEEEeCCCCHHHHHHHH---------HhCCCCEEEEEeC---CCCCEEEEEEHHHHHHHHhcC-Ccch
Confidence 556779963 4444 89999999999 9999999999987 5 7999999999998432111 2467
Q ss_pred hhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCCC
Q psy1056 250 IEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYP 309 (590)
Q Consensus 250 V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~~ 309 (590)
++ |.+ +++++++++++.+|+++|.+++++.+||+|++|+++|+||..|+++.+...
T Consensus 103 v~--~~~--~~~~v~~~~~l~~al~~m~~~~~~~~~Vvde~g~lvGiIT~~Dil~~l~~~ 158 (173)
T 3ocm_A 103 RN--RLR--DPIIVHESIGILRLMDTLKRSRGQLVLVADEFGAIEGLVTPIDVFEAIAGE 158 (173)
T ss_dssp GG--GSB--CCCEECGGGCHHHHHHHHHHSTTCCEEEECTTCCEEEEECHHHHHHHHHCC
T ss_pred hH--hcC--CCeEECCCCcHHHHHHHHHHcCCeEEEEEeCCCCEEEEEeHHHHHHHHhCc
Confidence 77 445 889999999999999999999999999999999999999999999987643
|
| >2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=2.9e-14 Score=131.64 Aligned_cols=116 Identities=22% Similarity=0.320 Sum_probs=99.1
Q ss_pred CCcccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhccc----------cc
Q psy1056 177 PDMQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLE----------NS 243 (590)
Q Consensus 177 ~~~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~----------~~ 243 (590)
+..++|..++.+ ++++.+|++.| .+++++.+||+|+ +++++|+||.+|+.... ..
T Consensus 6 ~v~dim~~~~~~v~~~~tl~~a~~~m---------~~~~~~~~pVvd~---~~~lvGivt~~dl~~~~~~~~~~~~~~~~ 73 (160)
T 2o16_A 6 KVEDMMTRHPHTLLRTHTLNDAKHLM---------EALDIRHVPIVDA---NKKLLGIVSQRDLLAAQESSLQRSAQGDS 73 (160)
T ss_dssp BGGGTSEESCCCBCTTSBHHHHHHHH---------HHHTCSEEEEECT---TCBEEEEEEHHHHHHHHHHHCC-------
T ss_pred cHHHHhcCCCeEECCCCcHHHHHHHH---------HHcCCCEEEEEcC---CCcEEEEEeHHHHHHHHHHhhcccccccc
Confidence 344588776655 88999999999 9999999999997 69999999999997321 11
Q ss_pred cccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccC
Q psy1056 244 ANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRD 307 (590)
Q Consensus 244 ~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~ 307 (590)
.....++.++|.+ +++++++++++.+|+++|.+++++.+||+|+ |+++|+||.+||++...
T Consensus 74 ~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~lvGiit~~dil~~~~ 134 (160)
T 2o16_A 74 LAFETPLFEVMHT--DVTSVAPQAGLKESAIYMQKHKIGCLPVVAK-DVLVGIITDSDFVTIAI 134 (160)
T ss_dssp --CCCBHHHHSCS--CEEEBCTTSBHHHHHHHHHHTTCSCEEEEET-TEEEEEECHHHHHHHHH
T ss_pred hhcccCHHHHhcC--CCeEECCCCCHHHHHHHHHHhCCCEEEEEEC-CEEEEEEEHHHHHHHHH
Confidence 2246889999998 9999999999999999999999999999998 99999999999998643
|
| >1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A | Back alignment and structure |
|---|
Probab=99.49 E-value=6.1e-14 Score=132.59 Aligned_cols=116 Identities=15% Similarity=0.264 Sum_probs=100.5
Q ss_pred Ccccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhcc-c--cccccccchh
Q psy1056 178 DMQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFL-E--NSANMDLKIE 251 (590)
Q Consensus 178 ~~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~-~--~~~~~~~~V~ 251 (590)
..++|..++.+ ++++.+|++.| .+++++++||+++ +++++|++|.+|+... . .......+++
T Consensus 11 v~~im~~~~~~v~~~~~l~ea~~~~---------~~~~~~~~pVvd~---~g~~vGivt~~dl~~~~~~~~~~~~~~~v~ 78 (184)
T 1pvm_A 11 VEKIMNSNFKTVNWNTTVFDAVKIM---------NENHLYGLVVKDD---NGNDVGLLSERSIIKRFIPRNKKPDEVPIR 78 (184)
T ss_dssp GGGTSBTTCCEEETTCBHHHHHHHH---------HHHTCCEEEEECT---TSCEEEEEEHHHHHHHTGGGCCCGGGSBGG
T ss_pred HHHhcCCCCeEECCCCcHHHHHHHH---------HHcCCCEEEEEcC---CCcEEEEEeHHHHHHHHhhcccCcccCCHH
Confidence 34578776655 88999999999 9999999999987 6899999999999732 2 1123457899
Q ss_pred hccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccC
Q psy1056 252 KVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRD 307 (590)
Q Consensus 252 ~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~ 307 (590)
++|.+ +++++++++++.+|+++|.+++.+.+||+|++|+++|+||..||++...
T Consensus 79 ~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Givt~~dll~~~~ 132 (184)
T 1pvm_A 79 LVMRK--PIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLS 132 (184)
T ss_dssp GTSBS--SCCEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTTSC
T ss_pred HHhCC--CCcEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHHH
Confidence 99998 9999999999999999999999999999999899999999999998643
|
| >3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.3e-14 Score=134.32 Aligned_cols=114 Identities=20% Similarity=0.359 Sum_probs=98.6
Q ss_pred ccccc--cccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhccc---c---------
Q psy1056 180 QVIGG--NVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLE---N--------- 242 (590)
Q Consensus 180 ~im~~--~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~---~--------- 242 (590)
++|.. ++.+ ++++.+|++.| .+++++++||+|+ +++++|+||.+|+.... .
T Consensus 8 dim~~~~~~~~v~~~~~l~~a~~~m---------~~~~~~~~pVvd~---~~~~~Givt~~dl~~~~~~~~~~~~~~~~~ 75 (180)
T 3sl7_A 8 DFMTPRQNLHVVKPSTSVDDALELL---------VEKKVTGLPVIDD---NWTLVGVVSDYDLLALDSISGRSQNDTNLF 75 (180)
T ss_dssp HHSEEGGGCCCBCTTSBHHHHHHHH---------HHHTCSEEEEECT---TCBEEEEEEHHHHTCC--------------
T ss_pred HhcCCCCCceeeCCCCcHHHHHHHH---------HHcCCCeEEEECC---CCeEEEEEEHHHHHhhhhhccccCCccccc
Confidence 47766 4544 89999999999 9999999999998 69999999999997321 0
Q ss_pred -----------------ccccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccc
Q psy1056 243 -----------------SANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKS 305 (590)
Q Consensus 243 -----------------~~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~ 305 (590)
......+++++|++ +++++++++++.+|+++|.+++++.+||+|++|+++|+||.+|+++.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dil~~ 153 (180)
T 3sl7_A 76 PDVDSTWKTFNELQKLISKTYGKVVGDLMTP--SPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVVRA 153 (180)
T ss_dssp -----CCCSHHHHHHHHHTTTTCBHHHHSEE--SCCCEETTSBHHHHHHHHTTSTTCEEEEECTTCBEEEEEEHHHHHHH
T ss_pred ccccchhhhhHHHHHHHhccccccHHHHhCC--CceEeCCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHH
Confidence 01235789999998 89999999999999999999999999999999999999999999987
Q ss_pred cC
Q psy1056 306 RD 307 (590)
Q Consensus 306 ~~ 307 (590)
..
T Consensus 154 ~~ 155 (180)
T 3sl7_A 154 AL 155 (180)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=99.47 E-value=6.1e-14 Score=128.56 Aligned_cols=117 Identities=17% Similarity=0.166 Sum_probs=99.9
Q ss_pred CCCcccccc--cccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhcc-cc------c
Q psy1056 176 YPDMQVIGG--NVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFL-EN------S 243 (590)
Q Consensus 176 ~~~~~im~~--~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~-~~------~ 243 (590)
.+..++|.. ++.+ ++++.+|++.| .+++++++||+|+ +++++|+||.+|+... .. .
T Consensus 11 ~~v~~im~~~~~~~~v~~~~~~~~a~~~m---------~~~~~~~~pVvd~---~~~~~Givt~~dl~~~~~~~~~~~~~ 78 (157)
T 2emq_A 11 MTVKPFLIPADKVAHVQPGNYLDHALLVL---------TKTGYSAIPVLDT---SYKLHGLISMTMMMDAILGLERIEFE 78 (157)
T ss_dssp CBSTTTCEEGGGSCCBCTTSBHHHHHHHH---------HHSSSSEEEEECT---TCCEEEEEEHHHHHHHSBCSSSBCGG
T ss_pred CcHHhhccCCccceEECCCCcHHHHHHHH---------HHCCceEEEEEcC---CCCEEEEeeHHHHHHHHhcccccchH
Confidence 455568875 5544 88999999999 9999999999997 6999999999999732 11 1
Q ss_pred cccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCC
Q psy1056 244 ANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDY 308 (590)
Q Consensus 244 ~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~ 308 (590)
.....++.++|.+ +++++++++++.+|+++|.++++ +||+|++|+++|+||.+|+++....
T Consensus 79 ~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~~g~~~Giit~~dil~~~~~ 139 (157)
T 2emq_A 79 RLETMKVEEVMNR--NIPRLRLDDSLMKAVGLIVNHPF--VCVENDDGYFAGIFTRREVLKQLNK 139 (157)
T ss_dssp GGGTCBGGGTCBC--CCCEEETTSBHHHHHHHHHHSSE--EEEECSSSSEEEEEEHHHHHHHHHH
T ss_pred HhcCCcHHHHhCC--CCceecCCCcHHHHHHHHhhCCE--EEEEcCCCeEEEEEEHHHHHHHHHH
Confidence 2246789999998 99999999999999999999988 9999999999999999999987653
|
| >2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=5e-14 Score=125.82 Aligned_cols=112 Identities=23% Similarity=0.362 Sum_probs=96.7
Q ss_pred cccc---ccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhc-cc-c-ccccccch
Q psy1056 180 QVIG---GNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDF-LE-N-SANMDLKI 250 (590)
Q Consensus 180 ~im~---~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~-~~-~-~~~~~~~V 250 (590)
++|. .++.+ ++++.++++.| .+++++++||+|+ ++++|++|.+|+.. .. . ......++
T Consensus 10 ~im~~~~~~~~~v~~~~~~~~a~~~~---------~~~~~~~~~Vvd~----~~~~Givt~~dl~~~~~~~~~~~~~~~v 76 (135)
T 2rc3_A 10 HLLQEKGHTVVAIGPDDSVFNAMQKM---------AADNIGALLVMKD----EKLVGILTERDFSRKSYLLDKPVKDTQV 76 (135)
T ss_dssp HHHHHHCCCCCEECTTSBHHHHHHHH---------HHHTCSEEEEEET----TEEEEEEEHHHHHHHGGGSSSCGGGSBG
T ss_pred HHHhcCCCCcEEECCCCcHHHHHHHH---------HhcCCCEEEEEEC----CEEEEEEehHHHHHHHHHcCCCcccCCH
Confidence 4676 55544 88999999999 9999999999985 89999999999972 22 1 12346889
Q ss_pred hhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccC
Q psy1056 251 EKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRD 307 (590)
Q Consensus 251 ~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~ 307 (590)
.++|.+ +++++++++++.+|+++|.+++++.+||+| +|+++|+||.+|+++...
T Consensus 77 ~~~m~~--~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Giit~~dll~~~~ 130 (135)
T 2rc3_A 77 KEIMTR--QVAYVDLNNTNEDCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDAI 130 (135)
T ss_dssp GGTSBC--SCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHH
T ss_pred HHhccC--CCeEECCCCcHHHHHHHHHHhCCCEEEEEe-CCEEEEEEEHHHHHHHHH
Confidence 999998 999999999999999999999999999999 799999999999998653
|
| >3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.45 E-value=6.1e-14 Score=130.10 Aligned_cols=115 Identities=21% Similarity=0.284 Sum_probs=99.3
Q ss_pred cccccc---cccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhcc-ccc--cccccc
Q psy1056 179 MQVIGG---NVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFL-ENS--ANMDLK 249 (590)
Q Consensus 179 ~~im~~---~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~-~~~--~~~~~~ 249 (590)
.++|.. ++.+ ++++.+|++.| .+++++.+||+|+ +++++|+||.+|+... ... .....+
T Consensus 27 ~dim~~~~~~~~~v~~~~~l~~a~~~~---------~~~~~~~~~Vvd~---~~~~~Givt~~dl~~~~~~~~~~~~~~~ 94 (165)
T 3fhm_A 27 KDLLDRKGRDVVTVGPDVSIGEAAGTL---------HAHKIGAVVVTDA---DGVVLGIFTERDLVKAVAGQGAASLQQS 94 (165)
T ss_dssp HHHHHHHCSCCCEECTTSBHHHHHHHH---------HHHTCSEEEEECT---TSCEEEEEEHHHHHHHHHHHGGGGGTSB
T ss_pred HHHhccCCCCCeEECCCCCHHHHHHHH---------HHcCCCEEEEEcC---CCeEEEEEEHHHHHHHHHhcCCccccCC
Confidence 447764 3433 88999999999 9999999999998 6999999999999722 111 234688
Q ss_pred hhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCC
Q psy1056 250 IEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDY 308 (590)
Q Consensus 250 V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~ 308 (590)
+.++|.+ +++++++++++.+|+++|.+++++.+||+|+ |+++|+||..||++....
T Consensus 95 v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~~~Giit~~dil~~~~~ 150 (165)
T 3fhm_A 95 VSVAMTK--NVVRCQHNSTTDQLMEIMTGGRFRHVPVEEN-GRLAGIISIGDVVKARIG 150 (165)
T ss_dssp GGGTSBS--SCCCBCTTCBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHTTC
T ss_pred HHHHhcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHHHH
Confidence 9999998 9999999999999999999999999999998 999999999999998654
|
| >2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A | Back alignment and structure |
|---|
Probab=99.43 E-value=1.1e-13 Score=124.51 Aligned_cols=114 Identities=14% Similarity=0.239 Sum_probs=95.0
Q ss_pred cccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhcc-ccc--cccccchhhcc
Q psy1056 181 VIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFL-ENS--ANMDLKIEKVM 254 (590)
Q Consensus 181 im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~-~~~--~~~~~~V~~im 254 (590)
+|..++.+ ++++.++++.| .+++++.+||+|+ +++++|++|.+|+... ... .....++.++|
T Consensus 16 ~~~~~~~~v~~~~~~~~a~~~~---------~~~~~~~~~Vvd~---~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m 83 (144)
T 2nyc_A 16 ITQDNMKSCQMTTPVIDVIQML---------TQGRVSSVPIIDE---NGYLINVYEAYDVLGLIKGGIYNDLSLSVGEAL 83 (144)
T ss_dssp CBCSSCCCBCTTSBHHHHHHHH---------HHHTCSEEEEECT---TCBEEEEEEHHHHHHHHHTC----CCSBHHHHH
T ss_pred CCCCCceEECCCCcHHHHHHHH---------HHcCcceeeEEcC---CCcEEEEEcHHHHHHHhcccccccCCccHHHHH
Confidence 56555554 88999999999 9999999999997 6999999999999832 111 12357899999
Q ss_pred ccCC----CeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccccc
Q psy1056 255 TNVN----EIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSR 306 (590)
Q Consensus 255 ~~~~----~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~ 306 (590)
.+.. +++++++++++.+++++|.+++.+.+||+|++|+++|+||.+|+++..
T Consensus 84 ~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l 139 (144)
T 2nyc_A 84 MRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYI 139 (144)
T ss_dssp HHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHH
T ss_pred hcCccccCCCeEECCCCcHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHH
Confidence 8521 578999999999999999999999999999999999999999998864
|
| >1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=1.2e-13 Score=126.87 Aligned_cols=112 Identities=13% Similarity=0.197 Sum_probs=96.9
Q ss_pred ccccccccc---hHHHHHHHHHhccccccccccccCcee-eEEeeCCCCCCeEEEEEecchhhccc--------------
Q psy1056 180 QVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCG-FPVTENGKLGEKLLGIVTSRDVDFLE-------------- 241 (590)
Q Consensus 180 ~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~-~pVvd~~~~~~~lvGivt~~Dl~~~~-------------- 241 (590)
++|..++.+ ++++.+|++.| .+++++. +||+|+ + +++|+||.+|+....
T Consensus 20 ~im~~~~~~v~~~~tl~ea~~~m---------~~~~~~~~~~Vvd~---~-~~vGivt~~dl~~~~~~~~~~~~~~~~~~ 86 (157)
T 1o50_A 20 KLISLKPTVVEEDTPIEEIVDRI---------LEDPVTRTVYVARD---N-KLVGMIPVMHLLKVSGFHFFGFIPKEELI 86 (157)
T ss_dssp TSSCCCCEEECTTCBHHHHHHHH---------HHSTTCCEEEEEET---T-EEEEEEEHHHHHHHHHHHHHCCCC-----
T ss_pred hcccCCCceECCCCCHHHHHHHH---------HhCCCCccEEEEEC---C-EEEEEEEHHHHHHHHhhhHHhhhccHHHH
Confidence 478776655 88999999999 9999999 999998 5 999999999997321
Q ss_pred ---cccccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccC
Q psy1056 242 ---NSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRD 307 (590)
Q Consensus 242 ---~~~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~ 307 (590)
.......+++++|.+ ++++++++++.+|+++|.+++++.+||+|++|+++|+||..|+++...
T Consensus 87 ~~~~~~~~~~~v~~im~~---~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dll~~l~ 152 (157)
T 1o50_A 87 RSSMKRLIAKNASEIMLD---PVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALW 152 (157)
T ss_dssp --CCCCCSSCBHHHHCBC---CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred HHHHHHHcCCcHHHHcCC---CeEECCCCCHHHHHHHHHHCCCcEEEEEcCCCEEEEEEEHHHHHHHHH
Confidence 012346789999984 789999999999999999999999999998999999999999998653
|
| >1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=8.8e-14 Score=128.05 Aligned_cols=114 Identities=13% Similarity=0.120 Sum_probs=97.6
Q ss_pred Ccccccc--cccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhcc-cc-c-----cc
Q psy1056 178 DMQVIGG--NVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFL-EN-S-----AN 245 (590)
Q Consensus 178 ~~~im~~--~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~-~~-~-----~~ 245 (590)
..++|.. ++.+ ++++.++++.| .+++++.+||+|+ +++++|+||.+|+... .. . ..
T Consensus 16 v~~im~~~~~~~~v~~~~~l~~a~~~m---------~~~~~~~~pVvd~---~~~lvGivt~~dl~~~~~~~~~~~~~~~ 83 (159)
T 1yav_A 16 VGQFMIEADKVAHVQVGNNLEHALLVL---------TKTGYTAIPVLDP---SYRLHGLIGTNMIMNSIFGLERIEFEKL 83 (159)
T ss_dssp HHHHSEEGGGSCCEETTCBHHHHHHHH---------HHHCCSEEEEECT---TCBEEEEEEHHHHHHHHBCSSSBCGGGT
T ss_pred HHHHhCCccceEEECCCCcHHHHHHHH---------HhCCCcEEEEECC---CCCEEEEeEHHHHHHHhhhhcccchhhh
Confidence 3457766 5554 88999999999 9999999999998 6899999999999732 11 1 12
Q ss_pred cccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccC
Q psy1056 246 MDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRD 307 (590)
Q Consensus 246 ~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~ 307 (590)
...++.++|.+ +++++.+++++.+|+++|.++++ +||+|++|+++|+||.+|+++...
T Consensus 84 ~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~--lpVvd~~g~~vGiit~~dil~~~~ 141 (159)
T 1yav_A 84 DQITVEEVMLT--DIPRLHINDPIMKGFGMVINNGF--VCVENDEQVFEGIFTRRVVLKELN 141 (159)
T ss_dssp TTSBHHHHSBC--SCCEEETTSBHHHHHHHTTTCSE--EEEECTTCBEEEEEEHHHHHHHHH
T ss_pred ccCCHHHhcCC--CCceEcCCCCHHHHHHHHHhCCE--EEEEeCCCeEEEEEEHHHHHHHHH
Confidence 46889999998 99999999999999999999987 999999999999999999998754
|
| >4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.4e-13 Score=126.38 Aligned_cols=105 Identities=27% Similarity=0.389 Sum_probs=92.7
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhc-c-cc-ccccccchhhccccCCCeeEEcC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDF-L-EN-SANMDLKIEKVMTNVNEIISAQA 265 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~-~-~~-~~~~~~~V~~im~~~~~~~tv~~ 265 (590)
++++.+|++.| .+++++.+||++ +++++|++|.+|+.. . .. ......+++++|++ +++++++
T Consensus 29 ~~~~~~a~~~~---------~~~~~~~~~V~~----~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~--~~~~v~~ 93 (157)
T 4fry_A 29 NDFVYDAIKLM---------AEKGIGALLVVD----GDDIAGIVTERDYARKVVLQERSSKATRVEEIMTA--KVRYVEP 93 (157)
T ss_dssp TSBHHHHHHHH---------HHHTCSEEEEES----SSSEEEEEEHHHHHHHSGGGTCCSSSCBHHHHSBS--SCCCBCT
T ss_pred CCcHHHHHHHH---------HHcCCCEEEEee----CCEEEEEEEHHHHHHHHHhccCCccccCHHHHcCC--CCcEECC
Confidence 89999999999 999999999965 499999999999972 2 21 12246899999998 9999999
Q ss_pred CCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCCC
Q psy1056 266 GISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYP 309 (590)
Q Consensus 266 ~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~~ 309 (590)
++++.+|+++|.+++++.+||+| +|+++|+||.+|+++.....
T Consensus 94 ~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Giit~~dil~~l~~~ 136 (157)
T 4fry_A 94 SQSTDECMALMTEHRMRHLPVLD-GGKLIGLISIGDLVKSVIAD 136 (157)
T ss_dssp TSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHHH
Confidence 99999999999999999999999 79999999999999986543
|
| >3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.3e-13 Score=138.47 Aligned_cols=164 Identities=16% Similarity=0.228 Sum_probs=125.0
Q ss_pred CCcccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhcc-ccccccccchhh
Q psy1056 177 PDMQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFL-ENSANMDLKIEK 252 (590)
Q Consensus 177 ~~~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~-~~~~~~~~~V~~ 252 (590)
+..++|..++.+ ++++.++++.| .+++++++||+|+ +++++|++|.+|+... ........++++
T Consensus 85 ~v~~im~~~~~~v~~~~~~~~a~~~~---------~~~~~~~~~Vvd~---~~~~~Givt~~dl~~~~~~~~~~~~~v~~ 152 (280)
T 3kh5_A 85 PVREIMEENVITLKENADIDEAIETF---------LTKNVGGAPIVND---ENQLISLITERDVIRALLDKIDENEVIDD 152 (280)
T ss_dssp BGGGTSBCSCCCEETTCBHHHHHHHH---------HHTTCSEEEEECT---TCBEEEEEEHHHHHHHHGGGSCTTCBSGG
T ss_pred hHHHhcCCCCEEECCCCCHHHHHHHH---------HhCCCCEEEEEcC---CCEEEEEEEHHHHHHHHhhcCCCCCCHHH
Confidence 445688877655 88999999999 9999999999998 7999999999999832 222223458999
Q ss_pred ccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCCCC----------------CCcccC
Q psy1056 253 VMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPD----------------SSKDEN 316 (590)
Q Consensus 253 im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~~~----------------~~~d~~ 316 (590)
+|++ +++++++++++.++++.|.+++++.+||+ ++|+++|+||.+|+++...... ...+..
T Consensus 153 ~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv-~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m 229 (280)
T 3kh5_A 153 YITR--DVIVATPGERLKDVARTMVRNGFRRLPVV-SEGRLVGIITSTDFIKLLGSDWAFNHMQTGNVREITNVRMEEIM 229 (280)
T ss_dssp GCBC--SCCCBCTTCBHHHHHHHHHHHTCSEEEEE-ETTEEEEEEEHHHHHHHHTSHHHHHHHHSCCTHHHHHCBHHHHS
T ss_pred HhCC--CCeEECCCCcHHHHHHHHHHcCCCEEEEE-ECCEEEEEEEHHHHHHHHhhhhhhhhhcccchhhhhCCcHHHHh
Confidence 9998 99999999999999999999999999999 6899999999999998764210 001111
Q ss_pred CceEEeEeeccchhHHHHHHHHHHcCCcEEEEecCCCchhh
Q psy1056 317 NQLIVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNSIY 357 (590)
Q Consensus 317 ~~l~v~a~i~~~~~~~e~~~~li~~gad~i~V~~~~G~~~~ 357 (590)
.+- ...+.+..+..+.++.|.+.+...+.|...+|...|
T Consensus 230 ~~~--~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~~~G 268 (280)
T 3kh5_A 230 KRD--VITAKEGDKLKKIAEIMVTNDIGALPVVDENLRIKG 268 (280)
T ss_dssp BSS--CCCBCTTCBHHHHHHHHHHHTCCEEEEECTTCBEEE
T ss_pred cCC--CEEECCCCCHHHHHHHHHHCCCCEEEEECCCCeEEE
Confidence 010 123445567778888888888887777655554433
|
| >2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=3.1e-13 Score=124.55 Aligned_cols=117 Identities=11% Similarity=0.212 Sum_probs=97.0
Q ss_pred Ccccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhccc-cc-----ccccc
Q psy1056 178 DMQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLE-NS-----ANMDL 248 (590)
Q Consensus 178 ~~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~-~~-----~~~~~ 248 (590)
..++|..++.+ ++++.+|++.| .+++++++||+|+. .+++++|+||.+|+.... .. .....
T Consensus 15 v~dim~~~~~~v~~~~~~~~a~~~~---------~~~~~~~~pVvd~~-~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~ 84 (164)
T 2pfi_A 15 VEHFMNHSITTLAKDTPLEEVVKVV---------TSTDVTEYPLVEST-ESQILVGIVQRAQLVQALQAEPPSRAPGHQQ 84 (164)
T ss_dssp HHHHCBCCCCCEETTCBHHHHHHHH---------HTCCCSEEEEESCT-TTCBEEEEEEHHHHHHHHHC-------CCCC
T ss_pred HHHHcCCCCeEECCCCcHHHHHHHH---------HhCCCCceeEEecC-CCCEEEEEEEHHHHHHHHHhhccccCCcccc
Confidence 34578776655 88999999999 99999999999840 048999999999997321 11 01246
Q ss_pred chhhccccCCC------eeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccC
Q psy1056 249 KIEKVMTNVNE------IISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRD 307 (590)
Q Consensus 249 ~V~~im~~~~~------~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~ 307 (590)
++.++|.+ + ++++++++++.+|+++|.+++++.+||+| +|+++|+||.+|+++...
T Consensus 85 ~v~~~m~~--~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~l~Giit~~dil~~~~ 146 (164)
T 2pfi_A 85 CLQDILAR--GCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTS-RGRAVGCVSWVEMKKAIS 146 (164)
T ss_dssp BHHHHHHT--TCCCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHHHHHH
T ss_pred hhhhhhcc--cccccCCceEECCCCcHHHHHHHHHHhCCCEEEEEE-CCEEEEEEEHHHHHHHHH
Confidence 89999987 6 78999999999999999999999999999 799999999999998754
|
| >2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A | Back alignment and structure |
|---|
Probab=99.36 E-value=1.1e-12 Score=132.54 Aligned_cols=125 Identities=12% Similarity=0.239 Sum_probs=104.6
Q ss_pred HHHHHHHhhhcC---CCcccccccccc---hHHHHHHHHHhcccccccccccc-----CceeeEEeeCCCCCCeEEEEEe
Q psy1056 165 QIEMIKYIKKEY---PDMQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCH-----GFCGFPVTENGKLGEKLLGIVT 233 (590)
Q Consensus 165 ~~~~v~~vk~~~---~~~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~-----~~~~~pVvd~~~~~~~lvGivt 233 (590)
....+..+.. + ...++|+.++.+ +.++.++++.| .++ +++.+||+++ +++++|+||
T Consensus 122 ~~~~i~~~l~-~~~~~v~~iM~~~~~~v~~~~tv~ea~~~~---------~~~~~~~~~~~~~~Vvd~---~~~lvGivt 188 (278)
T 2yvy_A 122 TRAEVEALAR-YEEDEAGGLMTPEYVAVREGMTVEEVLRFL---------RRAAPDAETIYYIYVVDE---KGRLKGVLS 188 (278)
T ss_dssp HHHHHHHHHH-SCTTBGGGTCBSCCCEECTTSBHHHHHHHH---------HHHTTTCSCSSEEEEECT---TCBEEEEEE
T ss_pred HHHHHHHHHC-CCcchHHhhcCCCceEECCCCcHHHHHHHH---------HHccCCccceeEEEEECC---CCCEEEEEE
Confidence 3444444444 3 345689877666 88999999999 765 7899999998 699999999
Q ss_pred cchhhccccccccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCC
Q psy1056 234 SRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDY 308 (590)
Q Consensus 234 ~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~ 308 (590)
.+|+.... ...+++++|.+ +++++++++++.+++++|.+++++.+||+|++|+++|+||..|+++....
T Consensus 189 ~~dll~~~----~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivT~~Dil~~i~~ 257 (278)
T 2yvy_A 189 LRDLIVAD----PRTRVAEIMNP--KVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEA 257 (278)
T ss_dssp HHHHHHSC----TTCBSTTTSBS--SCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHC--
T ss_pred HHHHhcCC----CCCcHHHHhCC--CCeEEeCCCCHHHHHHHHHhcCCCEEEEEeCCCeEEEEEEHHHHHHHHHH
Confidence 99998542 35789999998 99999999999999999999999999999999999999999999987653
|
| >2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=99.35 E-value=6.4e-13 Score=134.81 Aligned_cols=123 Identities=16% Similarity=0.257 Sum_probs=104.7
Q ss_pred HHHHHHhhhcCCC---cccccccccc---hHHHHHHHHHhcccccccccccc-----CceeeEEeeCCCCCCeEEEEEec
Q psy1056 166 IEMIKYIKKEYPD---MQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCH-----GFCGFPVTENGKLGEKLLGIVTS 234 (590)
Q Consensus 166 ~~~v~~vk~~~~~---~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~-----~~~~~pVvd~~~~~~~lvGivt~ 234 (590)
...++.+.. ++. .++|+.++.+ ++++.++++.| .++ +++++||+|+ +++++|+||.
T Consensus 125 ~~~i~~ll~-~~~~~v~~iM~~~~~~v~~~~tv~ea~~~~---------~~~~~~~~~~~~~pVvd~---~~~lvGivt~ 191 (286)
T 2oux_A 125 AGEIKELLH-YEDETAGAIMTTEFVSIVANQTVRSAMYVL---------KNQADMAETIYYVYVVDQ---ENHLVGVISL 191 (286)
T ss_dssp HHHHHHHTT-SCTTBHHHHCBSCCCEECSSSBHHHHHHHH---------HHHCSSCSCCSEEEEECT---TCBEEEEEEH
T ss_pred HHHHHHHhc-CChHHHHHhCCCCceEECCCCcHHHHHHHH---------HHcccCccceeEEEEEcC---CCeEEEEEEH
Confidence 444555543 443 4588877665 88999999999 776 7888999998 6999999999
Q ss_pred chhhccccccccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccC
Q psy1056 235 RDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRD 307 (590)
Q Consensus 235 ~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~ 307 (590)
+|+.... ...+++++|.+ +++++++++++.+|+++|.+++++.+||+|++|+++|+||..|+++...
T Consensus 192 ~dll~~~----~~~~v~~im~~--~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIT~~Dil~~i~ 258 (286)
T 2oux_A 192 RDLIVND----DDTLIADILNE--RVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVID 258 (286)
T ss_dssp HHHTTSC----TTSBHHHHSBS--CCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred HHHHcCC----CCCcHHHHcCC--CCeeecCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHHH
Confidence 9998542 35789999998 9999999999999999999999999999999999999999999998754
|
| >2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=6e-13 Score=125.26 Aligned_cols=104 Identities=20% Similarity=0.303 Sum_probs=91.9
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEe--eCCCCCCeEEEEEecchhhcc-cc-----------------------
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVT--ENGKLGEKLLGIVTSRDVDFL-EN----------------------- 242 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVv--d~~~~~~~lvGivt~~Dl~~~-~~----------------------- 242 (590)
++++.+|++.| .+++++++||+ |+ +++++|+||.+|+... ..
T Consensus 33 ~~~~~~a~~~~---------~~~~~~~~pVv~~d~---~~~lvGiit~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (185)
T 2j9l_A 33 SMTVEDVETII---------SETTYSGFPVVVSRE---SQRLVGFVLRRDLIISIENARKKQDGVVSTSIIYFTEHSPPL 100 (185)
T ss_dssp CEEHHHHHHHH---------HHCCCSEEEEESCTT---TCBEEEEEEHHHHHHHHHHHHTSCSCCCTTCEEECSSSCCCC
T ss_pred CccHHHHHHHH---------HhcCCCceeEEEECC---CCeEEEEEEHHHHHHHHHhhcccCCCccccceeecccCCccc
Confidence 88999999999 99999999999 66 6999999999999722 11
Q ss_pred --ccccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccC
Q psy1056 243 --SANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRD 307 (590)
Q Consensus 243 --~~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~ 307 (590)
......++.++|.+ +++++++++++.+|+++|.+++++.+||+| +|+++|+||.+|+++...
T Consensus 101 ~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd-~g~~vGiit~~dll~~l~ 164 (185)
T 2j9l_A 101 PPYTPPTLKLRNILDL--SPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NGRLLGIITKKDVLKHIA 164 (185)
T ss_dssp CTTCCCCEECGGGEES--SCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHH
T ss_pred ccccccCccHHHhhCc--CCeEeCCCCCHHHHHHHHHhCCCcEEEEEE-CCEEEEEEEHHHHHHHHH
Confidence 01235789999998 999999999999999999999999999999 899999999999998754
|
| >3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.2e-12 Score=118.71 Aligned_cols=119 Identities=11% Similarity=0.209 Sum_probs=88.2
Q ss_pred hhcccCccc--cCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccccccccCCCCCCCCccCCccccc
Q psy1056 18 VKKYKHGFI--RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKDLSSPL 95 (590)
Q Consensus 18 vk~~~~~m~--~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Did~l~~~~~~~~~~~~~~~~~l 95 (590)
.+..+++|+ ++++++++++|+.+|+++|.+++++++||+|++ ++++|++|.+|+...+.
T Consensus 14 ~~~~~~iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~---~~lvGiit~~Di~~~~~---------------- 74 (156)
T 3k6e_A 14 LGQEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDE---KQFVGTIGLRDIMAYQM---------------- 74 (156)
T ss_dssp HTTGGGGEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC----CBEEEEEEHHHHHHHHH----------------
T ss_pred hccHHHhCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcCC---CcEEEEEEecchhhhhh----------------
Confidence 445556698 488999999999999999999999999999986 79999999994311100
Q ss_pred ccccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHHcCCcEEEEcCCCCchHHHHHHHHHhhhc
Q psy1056 96 TKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKE 175 (590)
Q Consensus 96 ~~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~~~~dvv~~~~~~~~~~~~~~~v~~vk~~ 175 (590)
.... .. .....
T Consensus 75 ~~~~--------------~~------------------------------------------------------~~~~~- 85 (156)
T 3k6e_A 75 EHDL--------------SQ------------------------------------------------------EIMAD- 85 (156)
T ss_dssp HHTC--------------CH------------------------------------------------------HHHTT-
T ss_pred hccc--------------cc------------------------------------------------------ccccc-
Confidence 0000 00 00001
Q ss_pred CCCcccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhh
Q psy1056 176 YPDMQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVD 238 (590)
Q Consensus 176 ~~~~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~ 238 (590)
.+..++|..++.+ ++++.++++.| .++++ +||+|+ +|+++||||.+|+.
T Consensus 86 ~~v~~im~~~~~~v~~~~~l~~~~~~m---------~~~~~--lpVVd~---~g~l~GiiT~~Dil 137 (156)
T 3k6e_A 86 TDIVHMTKTDVAVVSPDFTITEVLHKL---------VDESF--LPVVDA---EGIFQGIITRKSIL 137 (156)
T ss_dssp SBGGGTCBCSCCCBCTTCCHHHHHHHT---------TTSSE--EEEECT---TSBEEEEEEHHHHH
T ss_pred cCHHHhhcCCceecccccHHHHHHHHH---------HHcCC--eEEEec---CCEEEEEEEHHHHH
Confidence 2333477776655 88999999999 87765 999998 79999999999997
|
| >2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=3.7e-12 Score=128.08 Aligned_cols=111 Identities=21% Similarity=0.219 Sum_probs=96.3
Q ss_pred cccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhc-ccc--ccccccchhh
Q psy1056 179 MQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDF-LEN--SANMDLKIEK 252 (590)
Q Consensus 179 ~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~-~~~--~~~~~~~V~~ 252 (590)
.++|..++.+ ++++.++++.| .+++++.+||+|+ +++++|++|.+|+.. ... ......++++
T Consensus 63 ~~~m~~~~~~v~~~~~l~~a~~~m---------~~~~~~~~~Vvd~---~~~~~Giit~~di~~~~~~~~~~~~~~~v~~ 130 (282)
T 2yzq_A 63 AMLVKRDVPVVKENDTLKKAAKLM---------LEYDYRRVVVVDS---KGKPVGILTVGDIIRRYFAKSEKYKGVEIEP 130 (282)
T ss_dssp -CCCBSCCCEEETTSBHHHHHHHH---------HHHTCSEEEEECT---TSCEEEEEEHHHHHHHTTTTCSGGGGCBSTT
T ss_pred HHHcCCCCcEECCCCcHHHHHHHH---------HHcCCCEEEEEcC---CCEEEEEEEHHHHHHHHHhccCCcccCcHHH
Confidence 3477665444 88999999999 9999999999998 689999999999974 322 1223578999
Q ss_pred ccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccc
Q psy1056 253 VMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLK 303 (590)
Q Consensus 253 im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll 303 (590)
+|.+ +++++++++++.++++.|.+++++.+||+|++|+++|++|..|++
T Consensus 131 ~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~~Giit~~dl~ 179 (282)
T 2yzq_A 131 YYQR--YVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLL 179 (282)
T ss_dssp TSBS--CCCCEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEEGGGGG
T ss_pred HhCC--CCEEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHh
Confidence 9998 999999999999999999999999999999999999999999999
|
| >2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A | Back alignment and structure |
|---|
Probab=99.29 E-value=4.4e-12 Score=137.46 Aligned_cols=127 Identities=12% Similarity=0.238 Sum_probs=108.9
Q ss_pred hHHHHHHHHHhhhcCCC---cccccccccc---hHHHHHHHHHhcccccccccccc-----CceeeEEeeCCCCCCeEEE
Q psy1056 162 SIYQIEMIKYIKKEYPD---MQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCH-----GFCGFPVTENGKLGEKLLG 230 (590)
Q Consensus 162 ~~~~~~~v~~vk~~~~~---~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~-----~~~~~pVvd~~~~~~~lvG 230 (590)
...+...++.+.+ ++. .++|+.++.+ +.+++++++.| .++ +++++||+|+ +++++|
T Consensus 139 ~~~~~~~i~~~l~-~~~~~v~~iM~~~~v~v~~~~tv~ea~~~~---------~~~~~~~~~~~~ipVvd~---~~~lvG 205 (473)
T 2zy9_A 139 DPRTRAEVEALAR-YEEDEAGGLMTPEYVAVREGMTVEEVLRFL---------RRAAPDAETIYYIYVVDE---KGRLKG 205 (473)
T ss_dssp CHHHHHHHHHHHT-SCTTBSTTTCBSCEEEECTTCBHHHHHHHH---------HHHGGGCSEEEEEEEECT---TSBEEE
T ss_pred CHHHHHHHHHHhc-CCCCCHHHhCCCCceEeCCCCcHHHHHHHH---------HhccCCcCceeEEEEECC---CCcEEE
Confidence 4456666777765 543 5689887766 88999999999 765 5899999998 699999
Q ss_pred EEecchhhccccccccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccC
Q psy1056 231 IVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRD 307 (590)
Q Consensus 231 ivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~ 307 (590)
++|.+|+.... .+.+++++|++ ++++++++++++++++.|.+++++.+||+|++|+++|+||.+|+++...
T Consensus 206 iVt~~Dll~~~----~~~~v~dim~~--~~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe~g~lvGiIT~~Dil~~i~ 276 (473)
T 2zy9_A 206 VLSLRDLIVAD----PRTRVAEIMNP--KVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLE 276 (473)
T ss_dssp EEEHHHHHHSC----TTSBGGGTSBS--SCCCEESSSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred EEEHHHHhcCC----CCCcHHHHhCC--CCeEEeCCCcHHHHHHHHHhcCCcEEEEEcCCCEEEEEEehHhhHHHHH
Confidence 99999998542 35789999998 9999999999999999999999999999999999999999999998754
|
| >2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.29 E-value=2.3e-12 Score=127.70 Aligned_cols=119 Identities=14% Similarity=0.223 Sum_probs=96.4
Q ss_pred CCCcccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhcc-c-c----cc--
Q psy1056 176 YPDMQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFL-E-N----SA-- 244 (590)
Q Consensus 176 ~~~~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~-~-~----~~-- 244 (590)
..+.++|+.++++ ++++.++.++| .+++++++|||++. .+++++|+||.+||... . . ..
T Consensus 13 ~~v~diMt~~vvtv~~~~tv~~~~~lm---------~~~~~~~~PVVd~~-~~~~LvGiIt~~dl~~~l~~~~~~~~~~~ 82 (250)
T 2d4z_A 13 IQVGDIMVRDVTSIASTSTYGDLLHVL---------RQTKLKFFPFVDTP-DTNTLLGSIDRTEVEGLLQRRISAYRRQP 82 (250)
T ss_dssp CBTTSSSBSSCCCEETTCBHHHHHHHH---------HHCCCSEEEEESCT-TTCBEEEEEEHHHHHHHHHHHHHTTSSSC
T ss_pred CChHHhcCCCCeEECCCCCHHHHHHHH---------HhcCCCEEEEEecC-CCCeEEEEEEHHHHHHHHHHhhhhhhhhh
Confidence 3455799998877 89999999999 99999999999861 02589999999999721 0 0 00
Q ss_pred --------------------------------------------------------------------------------
Q psy1056 245 -------------------------------------------------------------------------------- 244 (590)
Q Consensus 245 -------------------------------------------------------------------------------- 244 (590)
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (250)
T 2d4z_A 83 AAAAEADEEGRNGETGASFTGEAESSFAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQKKQKGTGQ 162 (250)
T ss_dssp CCCCCBCCC-----------------------------------------------------------------------
T ss_pred hhhhcccccccccccccccccCCcceeeeccccccccccccCccccCCcccCCccccccccccccccccccccccccccc
Confidence
Q ss_pred --------------------ccccch--h-hccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecc
Q psy1056 245 --------------------NMDLKI--E-KVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTD 301 (590)
Q Consensus 245 --------------------~~~~~V--~-~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~d 301 (590)
.+..+| . .+|.+ .++++.+++++.++..+|.+.+++++||++ +|+|+||||++|
T Consensus 163 ~~~~~~~~i~~~~~~~~~~~~l~~~Vdl~~~~md~--sP~tv~~~tsL~~v~~LF~~lglr~l~V~~-~GrLVGIVTrkD 239 (250)
T 2d4z_A 163 VASRFEEMLTLEEIYRWEQREKNVVVNFETCRIDQ--SPFQLVEGTSLQKTHTLFSLLGLDRAYVTS-MGKLVGVVALAE 239 (250)
T ss_dssp ----CCSCCBHHHHHHHHHHHTTCBCCTTSSCEEC--CSCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHH
T ss_pred cCcccccccChhhhhhHHHHhcCceeccccccccC--CCeEECCCCcHHHHHHHHHHhCCeEEEEEE-CCEEEEEEEHHH
Confidence 011222 2 36888 999999999999999999999999999997 699999999999
Q ss_pred cccccC
Q psy1056 302 LKKSRD 307 (590)
Q Consensus 302 ll~~~~ 307 (590)
|++++.
T Consensus 240 l~kai~ 245 (250)
T 2d4z_A 240 IQAAIE 245 (250)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998764
|
| >3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.28 E-value=9.2e-12 Score=110.32 Aligned_cols=112 Identities=18% Similarity=0.218 Sum_probs=84.7
Q ss_pred hhhcccCccc--cCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccccccccCCCCCCCCccCCcccc
Q psy1056 17 KVKKYKHGFI--RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKDLSSP 94 (590)
Q Consensus 17 ~vk~~~~~m~--~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Did~l~~~~~~~~~~~~~~~~~ 94 (590)
+|+++ |+ .+++++++++|+.+|+++|.+++++++||+|++ .++++|++|.+ |++.... +...+
T Consensus 6 ~v~di---M~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~--~~~~~Givt~~--dl~~~~~--------~~~~~ 70 (129)
T 3jtf_A 6 TVADI---MVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYEDD--RDNIIGILLAK--DLLRYML--------EPALD 70 (129)
T ss_dssp BHHHH---CEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESSS--TTCEEEEEEGG--GGGGGGT--------CTTSC
T ss_pred CHHHh---CccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCC--CCcEEEEEEHH--HHHhHhc--------cCCcC
Confidence 45555 99 778999999999999999999999999999872 15999999999 4431000 00000
Q ss_pred cccccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHHcCCcEEEEcCCCCchHHHHHHHHHhhh
Q psy1056 95 LTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKK 174 (590)
Q Consensus 95 l~~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~~~~dvv~~~~~~~~~~~~~~~v~~vk~ 174 (590)
+
T Consensus 71 v------------------------------------------------------------------------------- 71 (129)
T 3jtf_A 71 I------------------------------------------------------------------------------- 71 (129)
T ss_dssp G-------------------------------------------------------------------------------
T ss_pred H-------------------------------------------------------------------------------
Confidence 0
Q ss_pred cCCCcccccccccc--hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhh
Q psy1056 175 EYPDMQVIGGNVVT--TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVD 238 (590)
Q Consensus 175 ~~~~~~im~~~~~~--~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~ 238 (590)
.++|..++.+ ++++.++++.| .+++.+.+||+|+ +|+++|+||..|+.
T Consensus 72 ----~~~m~~~~~v~~~~~l~~~~~~m---------~~~~~~~~pVvd~---~g~~~Giit~~Dil 121 (129)
T 3jtf_A 72 ----RSLVRPAVFIPEVKRLNVLLREF---------RASRNHLAIVIDE---HGGISGLVTMEDVL 121 (129)
T ss_dssp ----GGGCBCCCEEETTCBHHHHHHHH---------HTSSCCEEEEECC----CCEEEEEEHHHHH
T ss_pred ----HHHhCCCeEeCCCCcHHHHHHHH---------HhcCCeEEEEEeC---CCCEEEEEEHHHHH
Confidence 1134333222 77889999999 9999999999998 69999999999997
|
| >1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=5.6e-11 Score=121.85 Aligned_cols=166 Identities=17% Similarity=0.129 Sum_probs=114.6
Q ss_pred hHHHHHHHHHH-cCCcEEEEecC-----CC------chhhHHHHHHHHHHhCCCceEEecc---ccC-cHHHHHHHHCCC
Q psy1056 330 ADKNRLKLLSQ-AGVDVVILDSS-----QG------NSIYQIEMIKFIKKEYPDMQVIGGN---VLF-GYQPRATLLNFI 393 (590)
Q Consensus 330 ~~~e~~~~li~-~gad~i~V~~~-----~G------~~~~~l~~i~~i~~~~~~vpvi~g~---v~s-~~~a~~l~~~Gv 393 (590)
+..+.++.+.+ +|+|.+.++.. +| +...+.+.++.+++.. ++|+++|- +.+ .+.++.+.++|+
T Consensus 112 ~~~~~a~~~~~~~g~d~iei~~~~p~~~~g~~~~g~~~~~~~eii~~v~~~~-~~pv~vk~~~~~~~~~~~a~~l~~~G~ 190 (311)
T 1ep3_A 112 DYVAVCAKIGDAANVKAIELNISCPNVKHGGQAFGTDPEVAAALVKACKAVS-KVPLYVKLSPNVTDIVPIAKAVEAAGA 190 (311)
T ss_dssp HHHHHHHHHTTSTTEEEEEEECCSEEGGGTTEEGGGCHHHHHHHHHHHHHHC-SSCEEEEECSCSSCSHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccCCCCEEEEeCCCCCCCCchhhhcCCHHHHHHHHHHHHHhc-CCCEEEEECCChHHHHHHHHHHHHcCC
Confidence 44455666666 89999988753 11 2345678899999887 68998863 334 345899999999
Q ss_pred CEEEEcc-------cc-cccC------CCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEEC
Q psy1056 394 YQIEMIK-------FI-KKEY------PDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMG 459 (590)
Q Consensus 394 d~i~v~~-------~~-~~~~------~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g 459 (590)
|+|.++. +. ++.. .++.+.......+..+++..+..++|||++|||+++.|+.+++++|||+|++|
T Consensus 191 d~i~v~~~~~g~~i~~~~~~~~~~~~~~g~~g~~~~~~~~~~i~~i~~~~~ipvia~GGI~~~~d~~~~l~~GAd~V~vg 270 (311)
T 1ep3_A 191 DGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQVAQDVDIPIIGMGGVANAQDVLEMYMAGASAVAVG 270 (311)
T ss_dssp SEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHHHHHHHHHHHTTCSSCEEECSSCCSHHHHHHHHHHTCSEEEEC
T ss_pred CEEEEeCCCcccccCcccCCccccCCCCcccCccchHHHHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence 9998832 11 1100 00111000011223344444445799999999999999999999999999999
Q ss_pred ccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecccceeEEeeCCchhchHHHHHhh
Q psy1056 460 SLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCG 539 (590)
Q Consensus 460 ~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~~~~~~~~~~~ 539 (590)
+.|... | .++..+..+
T Consensus 271 ~~~l~~---p-------------------------------------------------------------~~~~~i~~~ 286 (311)
T 1ep3_A 271 TANFAD---P-------------------------------------------------------------FVCPKIIDK 286 (311)
T ss_dssp THHHHC---T-------------------------------------------------------------THHHHHHHH
T ss_pred HHHHcC---c-------------------------------------------------------------HHHHHHHHH
Confidence 988311 0 136788889
Q ss_pred hhhhCcccCcCcHHHHHHhhc
Q psy1056 540 LKHGCQDIGAKSLSNLRAMMY 560 (590)
Q Consensus 540 l~~~m~~~G~~~i~~l~~~~~ 560 (590)
++..|...|++|++||+..+.
T Consensus 287 l~~~~~~~g~~~~~~~~g~~~ 307 (311)
T 1ep3_A 287 LPELMDQYRIESLESLIQEVK 307 (311)
T ss_dssp HHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHhChhc
Confidence 999999999999999998743
|
| >3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8} | Back alignment and structure |
|---|
Probab=99.27 E-value=3.9e-10 Score=116.25 Aligned_cols=126 Identities=22% Similarity=0.194 Sum_probs=92.1
Q ss_pred HHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccc
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQV 411 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~ 411 (590)
.+.++.+.+.|++++.++.. .+ .+.++++++. +++++. .+.+.+.++.+.++|+|+|.+.. ....|..|
T Consensus 92 ~~~~~~~~~~g~d~V~l~~g--~p---~~~~~~l~~~--g~~v~~-~v~s~~~a~~a~~~GaD~i~v~g---~~~GG~~G 160 (326)
T 3bo9_A 92 DDLVKVCIEEKVPVVTFGAG--NP---TKYIRELKEN--GTKVIP-VVASDSLARMVERAGADAVIAEG---MESGGHIG 160 (326)
T ss_dssp HHHHHHHHHTTCSEEEEESS--CC---HHHHHHHHHT--TCEEEE-EESSHHHHHHHHHTTCSCEEEEC---TTSSEECC
T ss_pred HHHHHHHHHCCCCEEEECCC--Cc---HHHHHHHHHc--CCcEEE-EcCCHHHHHHHHHcCCCEEEEEC---CCCCccCC
Confidence 45677788899999887543 33 3455666664 677765 78899999999999999996632 11111111
Q ss_pred ccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCCCCCCCce
Q psy1056 412 IGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEY 472 (590)
Q Consensus 412 ~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~~es~~~~ 472 (590)
.. +...+.++. +..++|||++|||+++.|+++++++||++|++|+.|..+.||+++.
T Consensus 161 -~~~~~~ll~~i~---~~~~iPviaaGGI~~~~dv~~al~~GA~gV~vGs~~~~~~e~~~~~ 218 (326)
T 3bo9_A 161 -EVTTFVLVNKVS---RSVNIPVIAAGGIADGRGMAAAFALGAEAVQMGTRFVASVESDVHP 218 (326)
T ss_dssp -SSCHHHHHHHHH---HHCSSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHTBSSCCSCH
T ss_pred -CccHHHHHHHHH---HHcCCCEEEECCCCCHHHHHHHHHhCCCEEEechHHHcCccccccH
Confidence 12 333344443 3347999999999999999999999999999999999999998763
|
| >3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.6e-12 Score=144.21 Aligned_cols=116 Identities=9% Similarity=0.122 Sum_probs=96.8
Q ss_pred Cccccc--ccccc---hHHHHHHHHHhcccccccccc-ccCceeeEEeeCCCCCCeEEEEEecchhhcccccc-------
Q psy1056 178 DMQVIG--GNVVT---TDQAKNLIDAGVDGLRVGSHG-CHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSA------- 244 (590)
Q Consensus 178 ~~~im~--~~~~~---~~~~~~a~~~m~~~~~v~~~~-~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~~~------- 244 (590)
..++|+ +++.+ +++++++.+.| . +++++++||+|+ +++++|+||.+|++......
T Consensus 455 V~diM~p~~~v~~v~~~~t~~e~~~~~---------~~~~~~~~~PVvd~---~~~lvGiVt~~DL~~~l~~~~~~~~~~ 522 (632)
T 3org_A 455 AREIMHPIEGEPHLFPDSEPQHIKGIL---------EKFPNRLVFPVIDA---NGYLLGAISRKEIVDRLQHVLEDVPEP 522 (632)
T ss_dssp HHHHCBCTTTSCCBCSSSCHHHHHHHH---------HHSTTCCEECBBCT---TCBBCCEESHHHHTTTTTTC-------
T ss_pred HHHHhhcCCCceEecCCCcHHHHHHHH---------HhcCCcceEEEEec---CCeEEEEEEHHHHHHHHHHHhhhcccc
Confidence 346888 66665 89999999999 9 899999999998 79999999999998321100
Q ss_pred ------------------------------------------ccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCC
Q psy1056 245 ------------------------------------------NMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKG 282 (590)
Q Consensus 245 ------------------------------------------~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~ 282 (590)
....+++++|++ +++++++++++.+++++|.+++++
T Consensus 523 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt~--~pitV~~~~~l~ea~~~M~~~~i~ 600 (632)
T 3org_A 523 IAGHRTLVLLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDV--SPIVVTSYSLVRQLHFLFVMLMPS 600 (632)
T ss_dssp ------------------------------------------------CCSCCC--CCCEEETTCBHHHHHHHHHHTCCS
T ss_pred cccccceeccCHHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhcC--CCceecCCCcHHHHHHHHHhcCCC
Confidence 000137889999 999999999999999999999999
Q ss_pred cceEEcCCCceEEEEeecccccccCC
Q psy1056 283 KLPILNDKGELIALIARTDLKKSRDY 308 (590)
Q Consensus 283 ~lpVvd~~g~l~Giit~~dll~~~~~ 308 (590)
++||+ ++|+++|+||++|+++....
T Consensus 601 ~lpVv-e~G~lvGIVT~~Dll~~~~~ 625 (632)
T 3org_A 601 MIYVT-ERGKLVGIVEREDVAYGYSN 625 (632)
T ss_dssp EEEEE-ETTEEEEEEEGGGTEECCCC
T ss_pred EEEEE-ECCEEEEEEehhhHHHHHhh
Confidence 99999 78999999999999998664
|
| >3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=3.4e-12 Score=140.46 Aligned_cols=117 Identities=16% Similarity=0.133 Sum_probs=99.9
Q ss_pred CCcccccccccc---h-HHHHHHHHHhccccccccccccCceeeEEee-CCCCCCeEEEEEecchhh--ccccccccccc
Q psy1056 177 PDMQVIGGNVVT---T-DQAKNLIDAGVDGLRVGSHGCHGFCGFPVTE-NGKLGEKLLGIVTSRDVD--FLENSANMDLK 249 (590)
Q Consensus 177 ~~~~im~~~~~~---~-~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd-~~~~~~~lvGivt~~Dl~--~~~~~~~~~~~ 249 (590)
+..++|+.++.+ + +++.++++.| .+++++++||+| + +++++||||.+||+ +.........+
T Consensus 385 ~V~diM~~~~vtv~~~~~tv~ea~~~m---------~~~~~~~lpVvd~~---~g~lvGiVt~~Dll~~l~~~~~~~~~~ 452 (527)
T 3pc3_A 385 AIAELELPAPPVILKSDATVGEAIALM---------KKHRVDQLPVVDQD---DGSVLGVVGQETLITQIVSMNRQQSDP 452 (527)
T ss_dssp BGGGGCCCCCSCCEETTCBHHHHHHHH---------HHHTCSEEEEECTT---TCCEEEEEEHHHHHHHHHHHCCCTTSB
T ss_pred cHHHhCcCCCeEEcCCCCcHHHHHHHH---------HHcCCCeEEEEECC---CCEEEEEEEHHHHHHHHHhccCcCCCc
Confidence 345688877766 7 8999999999 999999999999 6 68999999999997 22222334689
Q ss_pred hhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCC----CceEEEEeecccccccCCC
Q psy1056 250 IEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDK----GELIALIARTDLKKSRDYP 309 (590)
Q Consensus 250 V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~----g~l~Giit~~dll~~~~~~ 309 (590)
|+++|++ +++++++++++.+++++|.++++ +||+|++ |+++||||+.||++.+...
T Consensus 453 V~~im~~--~~~~v~~~~~l~~a~~~m~~~~~--~pVVd~~~~~~g~lvGIVT~~Dll~~l~~~ 512 (527)
T 3pc3_A 453 AIKALNK--RVIRLNESEILGKLARVLEVDPS--VLILGKNPAGKVELKALATKLDVTTFIAAG 512 (527)
T ss_dssp GGGGEET--TCCEEETTSBHHHHHHHHTTCSE--EEEEEECSSSCEEEEEEEEHHHHHHHHHTC
T ss_pred HHHHhcC--CCeEECCCCcHHHHHHHHhhCCE--EEEEeCCcccCCeEEEEEEHHHHHHHHHhc
Confidence 9999998 99999999999999999977775 7999984 9999999999999987653
|
| >2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.7e-11 Score=125.91 Aligned_cols=166 Identities=17% Similarity=0.089 Sum_probs=117.6
Q ss_pred hhHHHHHHHHHHcCCc---EEEEecCC----------CchhhHHHHHHHHHHhCCCceEEecccc--CcHH----HHHHH
Q psy1056 329 EADKNRLKLLSQAGVD---VVILDSSQ----------GNSIYQIEMIKFIKKEYPDMQVIGGNVL--FGYQ----PRATL 389 (590)
Q Consensus 329 ~~~~e~~~~li~~gad---~i~V~~~~----------G~~~~~l~~i~~i~~~~~~vpvi~g~v~--s~~~----a~~l~ 389 (590)
++..+.++.+.++|+| .+.++.+. ++.+...+.++.+++.. ++|+++|-.. +.++ |+.+.
T Consensus 106 ~~~~~~a~~~~~~g~d~~~~iein~~~P~~~g~~~~g~~~~~~~~ii~~vr~~~-~~Pv~vK~~~~~~~~~~~~~a~~~~ 184 (314)
T 2e6f_A 106 EENVAMVRRLAPVAQEKGVLLELNLSCPNVPGKPQVAYDFEAMRTYLQQVSLAY-GLPFGVKMPPYFDIAHFDTAAAVLN 184 (314)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEEEECCCCCSTTCCCGGGSHHHHHHHHHHHHHHH-CSCEEEEECCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcCceEEEEcCCCCCCCchhhcCCHHHHHHHHHHHHHhc-CCCEEEEECCCCCHHHHHHHHHHHH
Confidence 4556778888888999 89998642 13345678889998876 6899987544 4455 78888
Q ss_pred HCC-CCEEEEccccc--------ccCCCc---cc-ccc-----chhHHHHHHHHHhcC-CCcEEecCCCCCHHHHHHHHH
Q psy1056 390 LNF-IYQIEMIKFIK--------KEYPDM---QV-IGR-----NGTAVYRVAEYASRR-GVPVIADGGVQSVGHVMKALA 450 (590)
Q Consensus 390 ~~G-vd~i~v~~~~~--------~~~~~~---~~-~g~-----~~~~l~~~~~~~~~~-~v~iia~GGi~~~~di~kala 450 (590)
++| +|+|.++..+. +..... .. +|+ .+.++..+.+..+.. ++|||+.|||+|+.|+.++++
T Consensus 185 ~aG~~d~i~v~~~~~~~~~i~~~~~~~~~~~~~~~gG~sg~~~~p~~~~~i~~v~~~~~~ipvi~~GGI~~~~da~~~l~ 264 (314)
T 2e6f_A 185 EFPLVKFVTCVNSVGNGLVIDAESESVVIKPKQGFGGLGGKYILPTALANVNAFYRRCPDKLVFGCGGVYSGEDAFLHIL 264 (314)
T ss_dssp TCTTEEEEEECCCEEEEECEETTTTEESCCGGGGEEEEESGGGHHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHH
T ss_pred hcCCceEEEEeCCCCccccccCCCCCcccccCcCCCccCcccccHHHHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHH
Confidence 999 99998743321 000000 01 122 122333344443444 799999999999999999999
Q ss_pred cCCCEEEECccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecccceeEEeeCCchh
Q psy1056 451 LGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVL 530 (590)
Q Consensus 451 lGA~~v~~g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~~ 530 (590)
+|||+|++|+.|.. + | |
T Consensus 265 ~GAd~V~ig~~~l~--~-----------------~--------------------------------------p------ 281 (314)
T 2e6f_A 265 AGASMVQVGTALQE--E-----------------G--------------------------------------P------ 281 (314)
T ss_dssp HTCSSEEECHHHHH--H-----------------C--------------------------------------T------
T ss_pred cCCCEEEEchhhHh--c-----------------C--------------------------------------c------
Confidence 99999999998831 0 0 0
Q ss_pred chHHHHHhhhhhhCcccCcCcHHHHHHh
Q psy1056 531 RFLPYLQCGLKHGCQDIGAKSLSNLRAM 558 (590)
Q Consensus 531 ~~~~~~~~~l~~~m~~~G~~~i~~l~~~ 558 (590)
.++..+..+|+..|...|+++++||+..
T Consensus 282 ~~~~~i~~~l~~~~~~~g~~~i~~~~g~ 309 (314)
T 2e6f_A 282 GIFTRLEDELLEIMARKGYRTLEEFRGR 309 (314)
T ss_dssp THHHHHHHHHHHHHHHHTCCSSTTTTTC
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHhch
Confidence 2478899999999999999999999875
|
| >1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=3e-11 Score=123.98 Aligned_cols=166 Identities=15% Similarity=0.136 Sum_probs=117.3
Q ss_pred hhHHHHHHHHHHcCCc-EEEEecC--C--------CchhhHHHHHHHHHHhCCCceEEecccc--CcHH----HHHHHHC
Q psy1056 329 EADKNRLKLLSQAGVD-VVILDSS--Q--------GNSIYQIEMIKFIKKEYPDMQVIGGNVL--FGYQ----PRATLLN 391 (590)
Q Consensus 329 ~~~~e~~~~li~~gad-~i~V~~~--~--------G~~~~~l~~i~~i~~~~~~vpvi~g~v~--s~~~----a~~l~~~ 391 (590)
++..+.++.+.++|+| .+.++.+ + ++.+...+.++++++.. ++|+++|-.. +.++ |+.+.++
T Consensus 106 ~~~~~~a~~~~~~g~d~~iein~~~P~~~g~~~~g~~~e~~~~iv~~vr~~~-~~Pv~vKi~~~~~~~~~~~~a~~~~~~ 184 (311)
T 1jub_A 106 AENIAMLKKIQESDFSGITELNLSCPNVPGEPQLAYDFEATEKLLKEVFTFF-TKPLGVKLPPYFDLVHFDIMAEILNQF 184 (311)
T ss_dssp HHHHHHHHHHHHSCCCSEEEEESCCCCSSSCCCGGGCHHHHHHHHHHHTTTC-CSCEEEEECCCCSHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhcCCCeEEEEeccCCCCCCcccccCCHHHHHHHHHHHHHhc-CCCEEEEECCCCCHHHHHHHHHHHHHc
Confidence 4566788888899999 9999864 1 13345578888888876 7899987544 3333 7788889
Q ss_pred CCCEEEEcccc--------cccCCCc---ccc-cc-----chhHHHHHHHHHhcC--CCcEEecCCCCCHHHHHHHHHcC
Q psy1056 392 FIYQIEMIKFI--------KKEYPDM---QVI-GR-----NGTAVYRVAEYASRR--GVPVIADGGVQSVGHVMKALALG 452 (590)
Q Consensus 392 Gvd~i~v~~~~--------~~~~~~~---~~~-g~-----~~~~l~~~~~~~~~~--~v~iia~GGi~~~~di~kalalG 452 (590)
|+|+|.++..+ .+..... ..+ |+ .+.++..+++..+.. ++|||+.|||+|+.|+.+++++|
T Consensus 185 G~d~i~v~~~~~~g~~i~~~~~~~~~~~~~~~gG~sg~~~~~~~~~~i~~v~~~~~~~ipvi~~GGI~~~~da~~~l~~G 264 (311)
T 1jub_A 185 PLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCG 264 (311)
T ss_dssp CCCEEEECCCEEEEECEETTTTEESCSGGGGEEEEESGGGHHHHHHHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHHT
T ss_pred CCcEEEecCCCCcCceeccCCCCcccccCCCCCccccccccHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcC
Confidence 99999874332 0000000 011 11 112344445554445 69999999999999999999999
Q ss_pred CCEEEECccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecccceeEEeeCCchhch
Q psy1056 453 ASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRF 532 (590)
Q Consensus 453 A~~v~~g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~~~~ 532 (590)
||+|++|+.|.. + | -.+
T Consensus 265 Ad~V~vg~~~l~--~-----------------~--------------------------------------------p~~ 281 (311)
T 1jub_A 265 ATMLQIGTALHK--E-----------------G--------------------------------------------PAI 281 (311)
T ss_dssp CSEEEECHHHHH--H-----------------C--------------------------------------------THH
T ss_pred CCEEEEchHHHh--c-----------------C--------------------------------------------cHH
Confidence 999999998831 0 0 024
Q ss_pred HHHHHhhhhhhCcccCcCcHHHHHHh
Q psy1056 533 LPYLQCGLKHGCQDIGAKSLSNLRAM 558 (590)
Q Consensus 533 ~~~~~~~l~~~m~~~G~~~i~~l~~~ 558 (590)
+..+..+|+..|...|++|++||+..
T Consensus 282 ~~~i~~~l~~~l~~~g~~si~e~~g~ 307 (311)
T 1jub_A 282 FDRIIKELEEIMNQKGYQSIADFHGK 307 (311)
T ss_dssp HHHHHHHHHHHHHHHTCCSGGGTTTC
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHhCh
Confidence 77889999999999999999999865
|
| >3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.5e-11 Score=108.65 Aligned_cols=53 Identities=21% Similarity=0.439 Sum_probs=45.3
Q ss_pred hhhcccCccccC--CEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEecccc
Q psy1056 17 KVKKYKHGFIRD--PVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74 (590)
Q Consensus 17 ~vk~~~~~m~~~--~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Di 74 (590)
+|+++ |.++ ++++++++|+.+|+++|.+++++++||+|++ .|+++|++|.+|+
T Consensus 4 ~v~di---M~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~--~~~~vGivt~~dl 58 (127)
T 3nqr_A 4 RVRDI---MIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISED--KDHIEGILMAKDL 58 (127)
T ss_dssp BHHHH---SEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSS--TTCEEEEEEGGGG
T ss_pred CHHHh---cccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcCC--CCcEEEEEEHHHH
Confidence 35555 9954 9999999999999999999999999999863 1499999999943
|
| >3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.3e-11 Score=107.83 Aligned_cols=51 Identities=24% Similarity=0.438 Sum_probs=46.4
Q ss_pred hhhcccCccccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 17 KVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 17 ~vk~~~~~m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
+|++. |.++++++++++|+.+|+++|.+++++.+||+|++ |+++|++|.+|
T Consensus 2 ~v~~i---m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~---~~~~G~vt~~d 52 (122)
T 3kpb_A 2 LVKDI---LSKPPITAHSNISIMEAAKILIKHNINHLPIVDEH---GKLVGIITSWD 52 (122)
T ss_dssp BHHHH---CCSCCCCEETTSBHHHHHHHHHHHTCSCEEEECTT---SBEEEEECHHH
T ss_pred chHHh---hCCCCEEeCCCCcHHHHHHHHHHcCCCeEEEECCC---CCEEEEEEHHH
Confidence 34555 99999999999999999999999999999999976 79999999994
|
| >2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* | Back alignment and structure |
|---|
Probab=99.20 E-value=2e-11 Score=125.84 Aligned_cols=170 Identities=14% Similarity=0.114 Sum_probs=125.4
Q ss_pred cccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhh-cccc-------ccccccc
Q psy1056 181 VIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVD-FLEN-------SANMDLK 249 (590)
Q Consensus 181 im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~-~~~~-------~~~~~~~ 249 (590)
+|..++.+ ++++.++++.| .+++++++||+|++ +++++|++|.+|+. +... ......+
T Consensus 123 im~~~~~~v~~~~~~~~a~~~~---------~~~~~~~~~Vvd~~--~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~ 191 (330)
T 2v8q_E 123 DSFKPLVCISPNASLFDAVSSL---------IRNKIHRLPVIDPE--SGNTLYILTHKRILKFLKLFITEFPKPEFMSKS 191 (330)
T ss_dssp SSCCCCCCBCTTSBHHHHHHHH---------HHHTCSCEEEECTT--TCCEEEEECHHHHHHHHHHHSCSSSCCGGGGSB
T ss_pred cccCCceEeCCCCCHHHHHHHH---------HHCCCCeEEEEeCC--CCcEEEEEcHHHHHHHHHHHhhccCchhhhcCC
Confidence 56666655 88999999999 99999999999841 28999999999997 2211 1113466
Q ss_pred hhhc--cc-cCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCCCCC------CcccC----
Q psy1056 250 IEKV--MT-NVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDS------SKDEN---- 316 (590)
Q Consensus 250 V~~i--m~-~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~~~~------~~d~~---- 316 (590)
++++ |+ + +++++++++++.++++.|.+++++.+||+|++|+++|+||.+|+++....... ..+..
T Consensus 192 v~~~~v~~~~--~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~l~Giit~~dl~~~~~~~~~~~~~~~v~~~~~~~~ 269 (330)
T 2v8q_E 192 LEELQIGTYA--NIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVSVTKALQHRS 269 (330)
T ss_dssp HHHHTCSBCS--SCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEGGGTGGGGGSSCCCCCSSBHHHHGGGCC
T ss_pred HHHhcccCcC--CceEECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEHHHHHHHHhccccccccCcHHHHHhccc
Confidence 7776 65 5 89999999999999999999999999999999999999999999987653210 00111
Q ss_pred ---CceEEeEeeccchhHHHHHHHHHHcCCcEEEEecCCCchhhH---HHHHHHHH
Q psy1056 317 ---NQLIVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQ---IEMIKFIK 366 (590)
Q Consensus 317 ---~~l~v~a~i~~~~~~~e~~~~li~~gad~i~V~~~~G~~~~~---l~~i~~i~ 366 (590)
.. ...+....+..+.+..|.+.+...+.|...+|...|+ .+.++.+.
T Consensus 270 ~~~~~---~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~l~Giit~~Dil~~~~ 322 (330)
T 2v8q_E 270 HYFEG---VLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQALV 322 (330)
T ss_dssp SCCCS---CCEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred cccCC---CeEECCCCcHHHHHHHHHHCCCcEEEEEcCCCcEEEEEeHHHHHHHHH
Confidence 11 1233455677788999999999988776666655553 34444443
|
| >3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.5e-11 Score=113.47 Aligned_cols=141 Identities=20% Similarity=0.248 Sum_probs=91.9
Q ss_pred hhhcccCcccc--CCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccccccc-cCCCCCCCCccCCccc
Q psy1056 17 KVKKYKHGFIR--DPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDFL-ENSANMDLKIEKDLSS 93 (590)
Q Consensus 17 ~vk~~~~~m~~--~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Did~l-~~~~~~~~~~~~~~~~ 93 (590)
+|+++ |.+ +++++++++|+.+|+++|.+++++++||+|++ ++++|+||.+|+.-+ ..... .
T Consensus 5 ~v~di---m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~---~~~~Givt~~dl~~~~~~~~~----------~ 68 (180)
T 3sl7_A 5 TVGDF---MTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDN---WTLVGVVSDYDLLALDSISGR----------S 68 (180)
T ss_dssp BHHHH---SEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT---CBEEEEEEHHHHTCC-----------------
T ss_pred eHHHh---cCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEECCC---CeEEEEEEHHHHHhhhhhccc----------c
Confidence 44555 998 89999999999999999999999999999976 799999999953211 00000 0
Q ss_pred ccccccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHHcCCcEEEEcCCCCchHHHHHHHHHhh
Q psy1056 94 PLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIK 173 (590)
Q Consensus 94 ~l~~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~~~~dvv~~~~~~~~~~~~~~~v~~vk 173 (590)
..... +......... .+.... ..+....
T Consensus 69 ~~~~~------~~~~~~~~~~-----------------------~~~~~~-----------------------~~~~~~~ 96 (180)
T 3sl7_A 69 QNDTN------LFPDVDSTWK-----------------------TFNELQ-----------------------KLISKTY 96 (180)
T ss_dssp ------------------CCC-----------------------SHHHHH-----------------------HHHHTTT
T ss_pred CCccc------ccccccchhh-----------------------hhHHHH-----------------------HHHhccc
Confidence 00000 0000000000 000000 0001111
Q ss_pred hcCCCcccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhh
Q psy1056 174 KEYPDMQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVD 238 (590)
Q Consensus 174 ~~~~~~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~ 238 (590)
. .+..++|..++.+ ++++.++++.| .+++++.+||+++ +|+++|+||.+|+.
T Consensus 97 ~-~~v~~~m~~~~~~v~~~~~l~~a~~~m---------~~~~~~~lpVvd~---~g~~vGiit~~dil 151 (180)
T 3sl7_A 97 G-KVVGDLMTPSPLVVRDSTNLEDAARLL---------LETKFRRLPVVDA---DGKLIGILTRGNVV 151 (180)
T ss_dssp T-CBHHHHSEESCCCEETTSBHHHHHHHH---------TTSTTCEEEEECT---TCBEEEEEEHHHHH
T ss_pred c-ccHHHHhCCCceEeCCCCcHHHHHHHH---------HHcCCCEEEEECC---CCeEEEEEEHHHHH
Confidence 1 2333477766544 88999999999 9999999999997 69999999999997
|
| >3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.9e-11 Score=108.22 Aligned_cols=115 Identities=16% Similarity=0.185 Sum_probs=86.3
Q ss_pred hhhcccCccc--cCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccccccccCCCCCCCCccCCcccc
Q psy1056 17 KVKKYKHGFI--RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKDLSSP 94 (590)
Q Consensus 17 ~vk~~~~~m~--~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Did~l~~~~~~~~~~~~~~~~~ 94 (590)
+|+++ |+ ++++++++++|+.+|+++|.+++++++||+|++ .++++|++|.+| ++..... .....
T Consensus 4 ~v~~i---M~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~--~~~~vGivt~~d--l~~~~~~-----~~~~~-- 69 (136)
T 3lfr_A 4 QVRDI---MVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGES--HDDVLGVLLAKD--LLPLILK-----ADGDS-- 69 (136)
T ss_dssp BHHHH---SEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSS--TTCEEEEEEGGG--GGGGGGS-----SSGGG--
T ss_pred ChHhc---cccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCC--CCcEEEEEEHHH--HHHHHHh-----ccCCC--
Confidence 35555 98 678999999999999999999999999999863 149999999994 4310000 00000
Q ss_pred cccccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHHcCCcEEEEcCCCCchHHHHHHHHHhhh
Q psy1056 95 LTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKK 174 (590)
Q Consensus 95 l~~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~~~~dvv~~~~~~~~~~~~~~~v~~vk~ 174 (590)
T Consensus 70 -------------------------------------------------------------------------------- 69 (136)
T 3lfr_A 70 -------------------------------------------------------------------------------- 69 (136)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCcccccccccc--hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhh
Q psy1056 175 EYPDMQVIGGNVVT--TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVD 238 (590)
Q Consensus 175 ~~~~~~im~~~~~~--~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~ 238 (590)
.+..++|+.++++ ++++.++++.| .+++++.+||+|+ +|+++|+||.+|+.
T Consensus 70 -~~v~~~m~~~~~v~~~~~l~~~~~~m---------~~~~~~~~~Vvd~---~g~lvGiit~~Dil 122 (136)
T 3lfr_A 70 -DDVKKLLRPATFVPESKRLNVLLREF---------RANHNHMAIVIDE---YGGVAGLVTIEDVL 122 (136)
T ss_dssp -CCGGGTCBCCCEEETTCBHHHHHHHH---------HHHTCCEEEEECT---TSCEEEEEEHHHHH
T ss_pred -cCHHHHcCCCeEECCCCcHHHHHHHH---------HhcCCeEEEEEeC---CCCEEEEEEHHHHH
Confidence 1111245443333 78899999999 9999999999998 69999999999997
|
| >3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.19 E-value=2.9e-11 Score=111.90 Aligned_cols=111 Identities=26% Similarity=0.337 Sum_probs=84.9
Q ss_pred cccc---CCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccccccccCCCCCCCCccCCcccccccccc
Q psy1056 24 GFIR---DPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKDLSSPLTKKIT 100 (590)
Q Consensus 24 ~m~~---~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Did~l~~~~~~~~~~~~~~~~~l~~~~~ 100 (590)
+|.+ +++++++++|+.+|+++|.+++++++||+|++ |+++|++|.+| ++.. +....
T Consensus 29 im~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~---~~~~Givt~~d--l~~~---------------~~~~~- 87 (165)
T 3fhm_A 29 LLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDAD---GVVLGIFTERD--LVKA---------------VAGQG- 87 (165)
T ss_dssp HHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECTT---SCEEEEEEHHH--HHHH---------------HHHHG-
T ss_pred HhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCC---CeEEEEEEHHH--HHHH---------------HHhcC-
Confidence 3885 79999999999999999999999999999976 79999999994 3210 00000
Q ss_pred cCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHHcCCcEEEEcCCCCchHHHHHHHHHhhhcCCCcc
Q psy1056 101 LAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQ 180 (590)
Q Consensus 101 ~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~ 180 (590)
. .... .+..+
T Consensus 88 ----------------------~-----------------------------------------------~~~~-~~v~~ 97 (165)
T 3fhm_A 88 ----------------------A-----------------------------------------------ASLQ-QSVSV 97 (165)
T ss_dssp ----------------------G-----------------------------------------------GGGT-SBGGG
T ss_pred ----------------------C-----------------------------------------------cccc-CCHHH
Confidence 0 0000 12223
Q ss_pred cccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhh
Q psy1056 181 VIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVD 238 (590)
Q Consensus 181 im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~ 238 (590)
+|..++.+ ++++.++++.| .+++++.+||+|+ |+++|+||.+|+.
T Consensus 98 ~m~~~~~~v~~~~~l~~a~~~m---------~~~~~~~lpVvd~----g~~~Giit~~dil 145 (165)
T 3fhm_A 98 AMTKNVVRCQHNSTTDQLMEIM---------TGGRFRHVPVEEN----GRLAGIISIGDVV 145 (165)
T ss_dssp TSBSSCCCBCTTCBHHHHHHHH---------HHHTCSEEEEEET----TEEEEEEEHHHHH
T ss_pred HhcCCCeEECCCCcHHHHHHHH---------HHcCCCEEEEEEC----CEEEEEEEHHHHH
Confidence 55554443 78999999999 9999999999997 8999999999998
|
| >3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.19 E-value=2.6e-11 Score=111.28 Aligned_cols=52 Identities=15% Similarity=0.371 Sum_probs=45.5
Q ss_pred cccCcccc--CCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 20 KYKHGFIR--DPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 20 ~~~~~m~~--~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
.++++|++ +++++++++|+.+|+++|.+++++++||+|++ .++++|++|.+|
T Consensus 39 ~v~diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~--~~~lvGivt~~d 92 (156)
T 3oi8_A 39 EVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGED--KDEVLGILHAKD 92 (156)
T ss_dssp BGGGTCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSS--TTCEEEEEEGGG
T ss_pred CHhheeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCC--CCcEEEEEEHHH
Confidence 34456997 78999999999999999999999999999975 139999999994
|
| >2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A | Back alignment and structure |
|---|
Probab=99.18 E-value=3e-11 Score=108.49 Aligned_cols=110 Identities=17% Similarity=0.226 Sum_probs=85.5
Q ss_pred CccccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccc--eeEEEEeccccccccCCCCCCCCccCCcccccccccc
Q psy1056 23 HGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGE--KLLGIVTSRDVDFLENSANMDLKIEKDLSSPLTKKIT 100 (590)
Q Consensus 23 ~~m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~--~lvGivT~~Did~l~~~~~~~~~~~~~~~~~l~~~~~ 100 (590)
++|.++++++++++|+.+|+++|.+++++++||+|++ + +++|++|.+|+.-.+.. ..+..
T Consensus 9 ~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~---~~~~~~Givt~~dl~~~~~~-------~~~~~-------- 70 (141)
T 2rih_A 9 ELLKRPPVSLPETATIREVATELAKNRVGLAVLTARD---NPKRPVAVVSERDILRAVAQ-------RLDLD-------- 70 (141)
T ss_dssp GGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETT---EEEEEEEEEEHHHHHHHHHT-------TCCTT--------
T ss_pred HHhcCCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcCC---CcceeEEEEEHHHHHHHHhc-------CCCCC--------
Confidence 3499999999999999999999999999999999987 7 99999999943211000 00000
Q ss_pred cCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHHcCCcEEEEcCCCCchHHHHHHHHHhhhcCCCcc
Q psy1056 101 LAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQ 180 (590)
Q Consensus 101 ~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~ 180 (590)
.+..+
T Consensus 71 ---------------------------------------------------------------------------~~v~~ 75 (141)
T 2rih_A 71 ---------------------------------------------------------------------------GPAMP 75 (141)
T ss_dssp ---------------------------------------------------------------------------SBSGG
T ss_pred ---------------------------------------------------------------------------CCHHH
Confidence 11112
Q ss_pred cccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhh
Q psy1056 181 VIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVD 238 (590)
Q Consensus 181 im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~ 238 (590)
+|..++.+ + ++.++++.| .+++++.+||+|+ +|+++|+||.+|+.
T Consensus 76 ~m~~~~~~v~~~-~l~~a~~~m---------~~~~~~~l~Vvd~---~g~~~Giit~~dll 123 (141)
T 2rih_A 76 IANSPITVLDTD-PVHVAAEKM---------RRHNIRHVVVVNK---NGELVGVLSIRDLC 123 (141)
T ss_dssp GCBCCCEEETTS-BHHHHHHHH---------HHHTCSEEEEECT---TSCEEEEEEHHHHH
T ss_pred HcCCCCeEEcCC-CHHHHHHHH---------HHcCCeEEEEEcC---CCcEEEEEEHHHHH
Confidence 55444433 7 899999999 9999999999997 69999999999997
|
| >3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=4.4e-11 Score=109.95 Aligned_cols=51 Identities=16% Similarity=0.187 Sum_probs=45.1
Q ss_pred cccCccccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEecccc
Q psy1056 20 KYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74 (590)
Q Consensus 20 ~~~~~m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Di 74 (590)
.++++|.+ ++++++++|+.+|+++|.+++++++||+|++ |+++|++|.+|+
T Consensus 18 ~v~~im~~-~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~---~~~~Givt~~dl 68 (159)
T 3fv6_A 18 QVKDFQSI-PVVIHENVSVYDAICTMFLEDVGTLFVVDRD---AVLVGVLSRKDL 68 (159)
T ss_dssp BGGGSCBC-CCEEETTSBHHHHHHHHHHHTCSEEEEECTT---SCEEEEEEHHHH
T ss_pred CHHHHcCC-CEEECCCCcHHHHHHHHHHCCCCEEEEEcCC---CcEEEEEeHHHH
Confidence 44455987 6799999999999999999999999999976 799999999953
|
| >3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=3e-11 Score=109.74 Aligned_cols=51 Identities=14% Similarity=0.177 Sum_probs=46.2
Q ss_pred ccCcccc--CCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEecccc
Q psy1056 21 YKHGFIR--DPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74 (590)
Q Consensus 21 ~~~~m~~--~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Di 74 (590)
++++|.+ +++++++++|+.+|+++|.+++++.+||+|++ |+++|++|.+|+
T Consensus 30 v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~---~~~~Givt~~dl 82 (149)
T 3k2v_A 30 VNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDDD---MNIIGIFTDGDL 82 (149)
T ss_dssp GGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTT---CBEEEEEEHHHH
T ss_pred HHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCC---CcEEEEecHHHH
Confidence 3344999 99999999999999999999999999999976 799999999953
|
| >4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.9e-11 Score=110.68 Aligned_cols=127 Identities=19% Similarity=0.246 Sum_probs=88.9
Q ss_pred ccCcccc--CCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccccccccCCCCCCCCccCCcccccccc
Q psy1056 21 YKHGFIR--DPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKDLSSPLTKK 98 (590)
Q Consensus 21 ~~~~m~~--~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Did~l~~~~~~~~~~~~~~~~~l~~~ 98 (590)
++++|.+ +++++++++|+.+|+++|.+++++++||+|++ ++++|++|.+| ++...... .. ...+.
T Consensus 7 v~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~---~~~~G~vt~~d--l~~~~~~~-----~~-~~~~~-- 73 (152)
T 4gqw_A 7 VGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDED---WKLVGLVSDYD--LLALDSGD-----ST-WKTFN-- 73 (152)
T ss_dssp GGGTSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECTT---CBEEEEEEHHH--HTTCC---------C-CHHHH--
T ss_pred hhhccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeCC---CeEEEEEEHHH--HHHhhccc-----Cc-ccchH--
Confidence 3445998 89999999999999999999999999999986 79999999994 43110000 00 00000
Q ss_pred cccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHHcCCcEEEEcCCCCchHHHHHHHHHhhhcCCC
Q psy1056 99 ITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPD 178 (590)
Q Consensus 99 ~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~ 178 (590)
.... +. ..... .+.
T Consensus 74 -----------------------~~~~-------------------~~-----------------------~~~~~-~~v 87 (152)
T 4gqw_A 74 -----------------------AVQK-------------------LL-----------------------SKTNG-KLV 87 (152)
T ss_dssp -----------------------HHHT-------------------C----------------------------C-CBH
T ss_pred -----------------------HHHH-------------------HH-----------------------HHhcc-ccH
Confidence 0000 00 00000 122
Q ss_pred cccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhh
Q psy1056 179 MQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVD 238 (590)
Q Consensus 179 ~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~ 238 (590)
.++|..++.+ ++++.++++.| .+++++.+||+++ +|+++|+||.+|+.
T Consensus 88 ~~~m~~~~~~v~~~~~l~~a~~~~---------~~~~~~~l~Vvd~---~g~~~Giit~~dil 138 (152)
T 4gqw_A 88 GDLMTPAPLVVEEKTNLEDAAKIL---------LETKYRRLPVVDS---DGKLVGIITRGNVV 138 (152)
T ss_dssp HHHSEESCCCEESSSBHHHHHHHH---------HHSSCCEEEEECT---TSBEEEEEEHHHHH
T ss_pred HHhcCCCceEECCCCcHHHHHHHH---------HHCCCCEEEEECC---CCcEEEEEEHHHHH
Confidence 2366655444 88999999999 9999999999997 69999999999997
|
| >3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630} | Back alignment and structure |
|---|
Probab=99.17 E-value=3.6e-11 Score=109.01 Aligned_cols=112 Identities=19% Similarity=0.248 Sum_probs=85.7
Q ss_pred ccCcccc--CCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccccccccCCCCCCCCccCCcccccccc
Q psy1056 21 YKHGFIR--DPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKDLSSPLTKK 98 (590)
Q Consensus 21 ~~~~m~~--~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Did~l~~~~~~~~~~~~~~~~~l~~~ 98 (590)
++++|++ +++++++++|+.+|+++|.+++++++||+|++ .|+++|++|.+ |++.. +...
T Consensus 25 v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~--~~~lvGivt~~--dl~~~---------------~~~~ 85 (148)
T 3lv9_A 25 IREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRKN--KDDILGFVHIR--DLYNQ---------------KINE 85 (148)
T ss_dssp GGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESSS--TTSEEEEEEHH--HHHHH---------------HHHH
T ss_pred HHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCC--CCcEEEEEEHH--HHHHH---------------HhcC
Confidence 3456999 99999999999999999999999999999873 14999999999 44310 0000
Q ss_pred cccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHHcCCcEEEEcCCCCchHHHHHHHHHhhhcCCC
Q psy1056 99 ITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPD 178 (590)
Q Consensus 99 ~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~ 178 (590)
. ..+.
T Consensus 86 ~---------------------------------------------------------------------------~~~v 90 (148)
T 3lv9_A 86 N---------------------------------------------------------------------------KIEL 90 (148)
T ss_dssp S---------------------------------------------------------------------------CCCG
T ss_pred C---------------------------------------------------------------------------CccH
Confidence 0 0111
Q ss_pred cccccccccc--hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhh
Q psy1056 179 MQVIGGNVVT--TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVD 238 (590)
Q Consensus 179 ~~im~~~~~~--~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~ 238 (590)
.++|..++.+ ++++.++++.| .+++++.+||+|+ +|+++|+||..|+.
T Consensus 91 ~~~m~~~~~v~~~~~l~~~~~~m---------~~~~~~~l~Vvd~---~g~~~Giit~~dil 140 (148)
T 3lv9_A 91 EEILRDIIYISENLTIDKALERI---------RKEKLQLAIVVDE---YGGTSGVVTIEDIL 140 (148)
T ss_dssp GGTCBCCEEEETTSBHHHHHHHH---------HHHTCSEEEEECT---TSSEEEEEEHHHHH
T ss_pred HHhcCCCeEECCCCCHHHHHHHH---------HhcCCeEEEEEeC---CCCEEEEEEHHHHH
Confidence 2255222222 78899999999 9999999999998 79999999999997
|
| >2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* | Back alignment and structure |
|---|
Probab=99.17 E-value=2.6e-11 Score=125.18 Aligned_cols=165 Identities=9% Similarity=0.082 Sum_probs=121.3
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCC-e----EEEEEecchhhc-ccc----ccccccchhh---ccc
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGE-K----LLGIVTSRDVDF-LEN----SANMDLKIEK---VMT 255 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~-~----lvGivt~~Dl~~-~~~----~~~~~~~V~~---im~ 255 (590)
++++.++++.| .+++++++||+++ ++ + ++|++|.+|+.. ... ......++++ +|.
T Consensus 125 ~~~~~~a~~~~---------~~~~~~~~~Vvd~---~~~~~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~v~~l~~~m~ 192 (334)
T 2qrd_G 125 MHSLMDACLAM---------SKSRARRIPLIDV---DGETGSEMIVSVLTQYRILKFISMNCKETAMLRVPLNQMTIGTW 192 (334)
T ss_dssp TSBHHHHHHHH---------HHSCCSEEEEEEE---ETTTTEEEEEEEEEHHHHHHHHHHHCGGGGGCCCBGGGSSCSBC
T ss_pred CCcHHHHHHHH---------HHCCceEEEEEeC---CCCcCccceEEEeeHHHHHHHHHhhccchhhhhCcHHHhCCccc
Confidence 78899999999 9999999999986 34 4 999999999972 211 1123578899 588
Q ss_pred cCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCCCCC------CcccCCc----eEEeEee
Q psy1056 256 NVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDS------SKDENNQ----LIVGAAI 325 (590)
Q Consensus 256 ~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~~~~------~~d~~~~----l~v~a~i 325 (590)
+ +++++++++++.+|++.|.+++++.+||+|++|+++|+||.+|+++....... ..+.... ..-...+
T Consensus 193 ~--~~~~v~~~~~~~~~~~~m~~~~~~~~~Vvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~v 270 (334)
T 2qrd_G 193 S--NLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDYSNLDLSVGEALLKRPANFDGVHTC 270 (334)
T ss_dssp S--SCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEETHHHHHHHTTSCGGGGGSBHHHHHTTCCTTCCCCCEE
T ss_pred C--CceEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHHHHhhccccccccCcHHHHHhcccccCCCCEEE
Confidence 8 99999999999999999999999999999999999999999999986543210 0010000 0001234
Q ss_pred ccchhHHHHHHHHHHcCCcEEEEecCCCchhhH---HHHHHHHHH
Q psy1056 326 GTREADKNRLKLLSQAGVDVVILDSSQGNSIYQ---IEMIKFIKK 367 (590)
Q Consensus 326 ~~~~~~~e~~~~li~~gad~i~V~~~~G~~~~~---l~~i~~i~~ 367 (590)
....+..+.++.|.+.+...+.|...+|...|+ .+.++.+..
T Consensus 271 ~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~Giit~~dil~~~~~ 315 (334)
T 2qrd_G 271 RATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYIIY 315 (334)
T ss_dssp CTTCBHHHHHHHHHHSCCCEEEEECTTCBEEEEEEHHHHHHHHHS
T ss_pred CCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHHHHHHHh
Confidence 556677888999999999877776555655443 344444443
|
| >3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.1e-10 Score=112.29 Aligned_cols=107 Identities=15% Similarity=0.214 Sum_probs=86.8
Q ss_pred cCccccCCEEECCCCCHHHHHHHHHHc---CccceeeccCCcccceeEEEEeccccccccCCCCCCCCccCCcccccccc
Q psy1056 22 KHGFIRDPVCIAPSTTLGKVLQMKKQH---GFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKDLSSPLTKK 98 (590)
Q Consensus 22 ~~~m~~~~vtv~~~~ti~eA~~lM~~~---~i~~lpVvd~~~~~~~lvGivT~~Did~l~~~~~~~~~~~~~~~~~l~~~ 98 (590)
.++|+.+++++++++|+.+|++.|.++ +++.+||+|++ ++++|++|.+ |++..+ ...++
T Consensus 57 ~~iM~~~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~~---~~lvGivt~~--dll~~~----------~~~~v--- 118 (205)
T 3kxr_A 57 GRYTDHQMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEA---DKYLGTVRRY--DIFKHE----------PHEPL--- 118 (205)
T ss_dssp GGGCBCCCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECTT---CBEEEEEEHH--HHTTSC----------TTSBG---
T ss_pred HhhccCceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcCC---CeEEEEEEHH--HHHhCC----------CcchH---
Confidence 357999999999999999999999997 89999999987 8999999999 554210 00011
Q ss_pred cccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHHcCCcEEEEcCCCCchHHHHHHHHHhhhcCCC
Q psy1056 99 ITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPD 178 (590)
Q Consensus 99 ~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~ 178 (590)
T Consensus 119 -------------------------------------------------------------------------------- 118 (205)
T 3kxr_A 119 -------------------------------------------------------------------------------- 118 (205)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhh
Q psy1056 179 MQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVD 238 (590)
Q Consensus 179 ~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~ 238 (590)
.++|..++.+ ++++.++++.| .++++..+||+|+ +|+++|+||..|+.
T Consensus 119 ~~im~~~~~~v~~~~~l~~a~~~m---------~~~~~~~lpVVD~---~g~lvGiIT~~Dil 169 (205)
T 3kxr_A 119 ISLLSEDSRALTANTTLLDAAEAI---------EHSREIELPVIDD---AGELIGRVTLRAAT 169 (205)
T ss_dssp GGGCCSSCCCEETTSCHHHHHHHH---------HTSSCSEEEEECT---TSBEEEEEEHHHHH
T ss_pred HHHhcCCCeEECCCCCHHHHHHHH---------HhcCCCEEEEEcC---CCeEEEEEEHHHHH
Confidence 1245443333 77889999999 9999999999998 79999999999997
|
| >2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} | Back alignment and structure |
|---|
Probab=99.15 E-value=5.9e-11 Score=105.92 Aligned_cols=49 Identities=16% Similarity=0.337 Sum_probs=45.3
Q ss_pred CccccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEecccc
Q psy1056 23 HGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74 (590)
Q Consensus 23 ~~m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Di 74 (590)
++|.++++++++++|+.+|+++|.+++++++||+|++ |+++|++|.+|+
T Consensus 12 ~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~---~~~~Givt~~dl 60 (138)
T 2p9m_A 12 DVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDDE---NKVIGIVTTTDI 60 (138)
T ss_dssp GTSBCSCCCEETTSBHHHHHHHHHHHTCCEEEEECTT---CBEEEEEEHHHH
T ss_pred HhhcCCceEECCCCcHHHHHHHHHHCCCcEEEEECCC---CeEEEEEEHHHH
Confidence 4599999999999999999999999999999999976 799999999954
|
| >3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} | Back alignment and structure |
|---|
Probab=99.15 E-value=4.6e-11 Score=105.47 Aligned_cols=47 Identities=15% Similarity=0.101 Sum_probs=44.2
Q ss_pred CccccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 23 HGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 23 ~~m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
++|.++++++++++|+.+|+++|.+++++++||+|++ +++|++|.+|
T Consensus 9 ~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~----~~~Givt~~d 55 (128)
T 3gby_A 9 YLAETDYPVFTLGGSTADAARRLAASGCACAPVLDGE----RYLGMVHLSR 55 (128)
T ss_dssp GGCBCCSCCEETTSBHHHHHHHHHHHTCSEEEEEETT----EEEEEEEHHH
T ss_pred HhhcCCcceECCCCCHHHHHHHHHHCCCcEEEEEECC----EEEEEEEHHH
Confidence 3499999999999999999999999999999999985 9999999994
|
| >2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.14 E-value=8e-11 Score=105.10 Aligned_cols=50 Identities=16% Similarity=0.300 Sum_probs=45.8
Q ss_pred cCccccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEecccc
Q psy1056 22 KHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74 (590)
Q Consensus 22 ~~~m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Di 74 (590)
+++|.++++++++++|+.+|+++|.+++++++||+|++ |+++|++|.+|+
T Consensus 10 ~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~---~~~~Givt~~dl 59 (138)
T 2yzi_A 10 KVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDD---GNVVGFFTKSDI 59 (138)
T ss_dssp GGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECTT---SCEEEEEEHHHH
T ss_pred HHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC---CcEEEEEeHHHH
Confidence 34599999999999999999999999999999999966 799999999954
|
| >3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.14 E-value=2.7e-10 Score=111.18 Aligned_cols=123 Identities=17% Similarity=0.141 Sum_probs=89.1
Q ss_pred HHHHHHHHHcCCcEEEEecCCC-chhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCcc
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQG-NSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQ 410 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G-~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~ 410 (590)
.+.+..+.++|+|++.++.+.. .+....+.++.+++. +.++++ ++.+.+.++++.++|+|+|-+... . ++
T Consensus 91 ~~~i~~~~~aGad~I~l~~~~~~~p~~l~~~i~~~~~~--g~~v~~-~v~t~eea~~a~~~Gad~Ig~~~~---g---~t 161 (229)
T 3q58_A 91 LQDVDALAQAGADIIAFDASFRSRPVDIDSLLTRIRLH--GLLAMA-DCSTVNEGISCHQKGIEFIGTTLS---G---YT 161 (229)
T ss_dssp HHHHHHHHHHTCSEEEEECCSSCCSSCHHHHHHHHHHT--TCEEEE-ECSSHHHHHHHHHTTCSEEECTTT---T---SS
T ss_pred HHHHHHHHHcCCCEEEECccccCChHHHHHHHHHHHHC--CCEEEE-ecCCHHHHHHHHhCCCCEEEecCc---c---CC
Confidence 4556778899999999988754 334566777877765 666665 899999999999999999933211 1 11
Q ss_pred cccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccC
Q psy1056 411 VIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAG 464 (590)
Q Consensus 411 ~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~ 464 (590)
+.+. ....+..+.+.... ++|+|++|||.|+.|+.+++++|||+|++|+.|..
T Consensus 162 ~~~~~~~~~~~li~~l~~~-~ipvIA~GGI~t~~d~~~~~~~GadgV~VGsai~~ 215 (229)
T 3q58_A 162 GPITPVEPDLAMVTQLSHA-GCRVIAEGRYNTPALAANAIEHGAWAVTVGSAITR 215 (229)
T ss_dssp SSCCCSSCCHHHHHHHHTT-TCCEEEESSCCSHHHHHHHHHTTCSEEEECHHHHC
T ss_pred CCCcCCCCCHHHHHHHHHc-CCCEEEECCCCCHHHHHHHHHcCCCEEEEchHhcC
Confidence 1111 11112233333333 79999999999999999999999999999999964
|
| >3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.9e-11 Score=108.38 Aligned_cols=50 Identities=14% Similarity=0.197 Sum_probs=43.1
Q ss_pred cCcccc--CCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 22 KHGFIR--DPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 22 ~~~m~~--~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
+++|++ +++++++++|+.+|+++|.+++++++||+|++ .|+++|++|.+|
T Consensus 9 ~~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~--~~~~~Givt~~d 60 (130)
T 3i8n_A 9 TQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQ--KDNIIGFVHRLE 60 (130)
T ss_dssp TTTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESSS--TTCEEEECCHHH
T ss_pred hhCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCC--CCcEEEEEEHHH
Confidence 345994 46699999999999999999999999999863 159999999994
|
| >2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.14 E-value=6e-11 Score=105.24 Aligned_cols=110 Identities=17% Similarity=0.296 Sum_probs=84.7
Q ss_pred CccccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccccccccCCCCCCCCccCCcccccccccccC
Q psy1056 23 HGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKDLSSPLTKKITLA 102 (590)
Q Consensus 23 ~~m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Did~l~~~~~~~~~~~~~~~~~l~~~~~~~ 102 (590)
++|.++++++++++|+.+|+++|.+++++.+||+| + |+++|++|.+|+.-.+... ....
T Consensus 8 ~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~---~~~~Givt~~dl~~~~~~~-------~~~~---------- 66 (133)
T 2ef7_A 8 EYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVD-G---NKPVGIITERDIVKAIGKG-------KSLE---------- 66 (133)
T ss_dssp GTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEE-T---TEEEEEEEHHHHHHHHHTT-------CCTT----------
T ss_pred HhccCCCEEECCCCcHHHHHHHHHhcCCCEEEEEE-C---CEEEEEEcHHHHHHHHhcC-------CCcc----------
Confidence 44999999999999999999999999999999999 5 6999999999532111000 0000
Q ss_pred CceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHHcCCcEEEEcCCCCchHHHHHHHHHhhhcCCCcccc
Q psy1056 103 APLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVI 182 (590)
Q Consensus 103 ~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~im 182 (590)
.+..++|
T Consensus 67 -------------------------------------------------------------------------~~v~~~~ 73 (133)
T 2ef7_A 67 -------------------------------------------------------------------------TKAEEFM 73 (133)
T ss_dssp -------------------------------------------------------------------------CBGGGTS
T ss_pred -------------------------------------------------------------------------cCHHHHc
Confidence 0111244
Q ss_pred cccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhh
Q psy1056 183 GGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVD 238 (590)
Q Consensus 183 ~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~ 238 (590)
..++.+ ++++.++++.| .+++++.+||+++ +|+++|+||.+|+.
T Consensus 74 ~~~~~~v~~~~~l~~~~~~~---------~~~~~~~l~Vvd~---~g~~~Giit~~dll 120 (133)
T 2ef7_A 74 TASLITIREDSPITGALALM---------RQFNIRHLPVVDD---KGNLKGIISIRDIT 120 (133)
T ss_dssp EECCCCEETTSBHHHHHHHH---------HHHTCSEEEEECT---TSCEEEEEEHHHHH
T ss_pred CCCCEEECCCCCHHHHHHHH---------HHcCCCEEEEECC---CCeEEEEEEHHHHH
Confidence 443333 78899999999 9999999999997 69999999999997
|
| >3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.14 E-value=2.8e-11 Score=107.44 Aligned_cols=53 Identities=8% Similarity=0.154 Sum_probs=44.8
Q ss_pred hhhcccCccc--cCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEecccc
Q psy1056 17 KVKKYKHGFI--RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74 (590)
Q Consensus 17 ~vk~~~~~m~--~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Di 74 (590)
+|+++ |+ ++++++++++|+.+|+++|.+++++++||+|++ .++++|++|.+|+
T Consensus 3 ~v~~i---M~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~--~~~lvGivt~~dl 57 (130)
T 3hf7_A 3 SVNDI---MVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDS--LDDAISMLRVREA 57 (130)
T ss_dssp BHHHH---SEEGGGCCEEETTSCHHHHHHHHHTCSSSEEEEESSS--GGGEEEEEEHHHH
T ss_pred CHHHh---CccHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCC--CCcEEEEEEHHHH
Confidence 34555 87 478999999999999999999999999999752 1699999999943
|
| >3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0 | Back alignment and structure |
|---|
Probab=99.13 E-value=7.7e-11 Score=106.88 Aligned_cols=55 Identities=20% Similarity=0.333 Sum_probs=48.2
Q ss_pred HHHhhhcccCccc--cCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEecccc
Q psy1056 14 EVLKVKKYKHGFI--RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74 (590)
Q Consensus 14 ~~~~vk~~~~~m~--~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Di 74 (590)
.-.+|+++ |. .+++++++++|+.+|+++|.+++++++||+|++ |+++|++|.+|+
T Consensus 13 ~~~~v~~i---m~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~~---~~~~Givt~~dl 69 (150)
T 3lqn_A 13 QQIFVKDL---MISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPM---YKLHGLISTAMI 69 (150)
T ss_dssp HHCBHHHH---SEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECTT---CBEEEEEEHHHH
T ss_pred hcCChhhc---ccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECCC---CCEEEEEEHHHH
Confidence 33466666 99 569999999999999999999999999999976 799999999953
|
| >3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.12 E-value=6.4e-11 Score=110.51 Aligned_cols=112 Identities=21% Similarity=0.255 Sum_probs=86.0
Q ss_pred cccCccc--cCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccccccccCCCCCCCCccCCccccccc
Q psy1056 20 KYKHGFI--RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKDLSSPLTK 97 (590)
Q Consensus 20 ~~~~~m~--~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Did~l~~~~~~~~~~~~~~~~~l~~ 97 (590)
.++++|+ ++++++++++|+.+|+++|.+++++++||+|++ .++++|++|.+ |++... ..
T Consensus 43 ~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~--~~~lvGivt~~--dl~~~~---------------~~ 103 (172)
T 3lhh_A 43 TISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNN--VDDMVGIISAK--QLLSES---------------IA 103 (172)
T ss_dssp CTTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESSS--TTSEEEEEEHH--HHHHHH---------------HT
T ss_pred CHHHhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCC--CCeEEEEEEHH--HHHHHH---------------hh
Confidence 3445699 788999999999999999999999999999862 14999999999 443100 00
Q ss_pred ccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHHcCCcEEEEcCCCCchHHHHHHHHHhhhcCC
Q psy1056 98 KITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYP 177 (590)
Q Consensus 98 ~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~ 177 (590)
+ .+ .+
T Consensus 104 ----------------------------~------~~-----------------------------------------~~ 108 (172)
T 3lhh_A 104 ----------------------------G------ER-----------------------------------------LE 108 (172)
T ss_dssp ----------------------------T------CC-----------------------------------------CC
T ss_pred ----------------------------c------Cc-----------------------------------------cc
Confidence 0 00 11
Q ss_pred Ccccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhh
Q psy1056 178 DMQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVD 238 (590)
Q Consensus 178 ~~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~ 238 (590)
..++| .++.+ ++++.++++.| .+++++.+||+|+ +|+++||||..|+.
T Consensus 109 v~~im-~~~~~v~~~~~l~~a~~~m---------~~~~~~~~pVvd~---~g~lvGiit~~Dil 159 (172)
T 3lhh_A 109 LVDLV-KNCNFVPNSLSGMELLEHF---------RTTGSQMVFVVDE---YGDLKGLVTLQDMM 159 (172)
T ss_dssp GGGGC-BCCEEEETTCCHHHHHHHH---------HHHTCSEEEEECT---TSCEEEEEEHHHHH
T ss_pred HHHHh-cCCeEeCCCCCHHHHHHHH---------HHcCCeEEEEEeC---CCCEEEEeeHHHHH
Confidence 11255 33333 78899999999 9999999999998 79999999999997
|
| >2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G* | Back alignment and structure |
|---|
Probab=99.12 E-value=3.7e-10 Score=139.40 Aligned_cols=95 Identities=8% Similarity=-0.082 Sum_probs=63.2
Q ss_pred ccCcHHHHHH----HHCCCCEEEE-cccccccCCCcccc-ccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHH---
Q psy1056 379 VLFGYQPRAT----LLNFIYQIEM-IKFIKKEYPDMQVI-GRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKAL--- 449 (590)
Q Consensus 379 v~s~~~a~~l----~~~Gvd~i~v-~~~~~~~~~~~~~~-g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kal--- 449 (590)
+.+..+|+++ .++|+|+|.+ ... +....|..|+ ......+..+.+..+..++|||++|||.++.|+++||
T Consensus 699 v~~~~~a~~~v~~l~~aG~D~iV~~q~~-G~eaGGH~g~~d~~~~~l~lv~~i~~~~~ipviaaGGI~~g~~i~aaltg~ 777 (2060)
T 2uva_G 699 KPGSVDAIQQVINIAKANPTFPIILQWT-GGRGGGHHSFEDFHQPILLMYSRIRKCSNIVLVAGSGFGGSEDTYPYLTGS 777 (2060)
T ss_dssp CCCSHHHHHHHHHHHHHCTTSCEEEEEC-CTTSSSSCCSCCSHHHHHHHHHHHHTSTTEEEEEESSCCSHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEeeeE-cccCCCCCCcccccchHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHhcCc
Confidence 4444555544 8899998841 111 1111111111 0112223344455555679999999999999999999
Q ss_pred --------HcCCCEEEECccccCCCCCCCceEe
Q psy1056 450 --------ALGASTAMMGSLLAGTSEAPGEYFF 474 (590)
Q Consensus 450 --------alGA~~v~~g~~l~~~~es~~~~~~ 474 (590)
+||||+|+||++|+.|.||+.+-.+
T Consensus 778 ws~~~g~palGAdgV~~GT~f~~t~Ea~~s~~~ 810 (2060)
T 2uva_G 778 WSTKFGYPPMPFDGCMFGSRMMTAKEAHTSKQA 810 (2060)
T ss_dssp GGGTTTSCCCCCSCEEESGGGGGBTTSCCCHHH
T ss_pred chhhcCCCCCCCCEEEEchhhhcCcCCCCCHHH
Confidence 9999999999999999999977433
|
| >2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.11 E-value=6.6e-11 Score=108.92 Aligned_cols=50 Identities=26% Similarity=0.459 Sum_probs=45.7
Q ss_pred cCccccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEecccc
Q psy1056 22 KHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74 (590)
Q Consensus 22 ~~~m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Di 74 (590)
+++|.++++++++++|+.+|+++|.+++++++||+|++ |+++|+||.+|+
T Consensus 8 ~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~---~~lvGivt~~dl 57 (160)
T 2o16_A 8 EDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDAN---KKLLGIVSQRDL 57 (160)
T ss_dssp GGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT---CBEEEEEEHHHH
T ss_pred HHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC---CcEEEEEeHHHH
Confidence 34499999999999999999999999999999999976 799999999953
|
| >1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A | Back alignment and structure |
|---|
Probab=99.10 E-value=5.3e-11 Score=105.60 Aligned_cols=53 Identities=21% Similarity=0.471 Sum_probs=47.2
Q ss_pred HhhhcccCccccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEecccc
Q psy1056 16 LKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74 (590)
Q Consensus 16 ~~vk~~~~~m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Di 74 (590)
.+|+++ |.++++++++++|+.+|+++|.+++++++||+|++ ++++|++|.+|+
T Consensus 8 ~~v~~i---m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~---~~~~Givt~~dl 60 (133)
T 1y5h_A 8 TTARDI---MNAGVTCVGEHETLTAAAQYMREHDIGALPICGDD---DRLHGMLTDRDI 60 (133)
T ss_dssp CCHHHH---SEETCCCEETTSBHHHHHHHHHHHTCSEEEEECGG---GBEEEEEEHHHH
T ss_pred cCHHHH---hcCCceEeCCCCCHHHHHHHHHHhCCCeEEEECCC---CeEEEEEeHHHH
Confidence 345555 99999999999999999999999999999999876 799999999953
|
| >3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni} | Back alignment and structure |
|---|
Probab=99.09 E-value=4.9e-11 Score=108.91 Aligned_cols=112 Identities=17% Similarity=0.271 Sum_probs=85.8
Q ss_pred hhhcccCcccc--CCEEECCCCCHHHHHHHHHHcCccceeec-cCCcccceeEEEEeccccccccCCCCCCCCccCCccc
Q psy1056 17 KVKKYKHGFIR--DPVCIAPSTTLGKVLQMKKQHGFCGFPVT-ENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKDLSS 93 (590)
Q Consensus 17 ~vk~~~~~m~~--~~vtv~~~~ti~eA~~lM~~~~i~~lpVv-d~~~~~~~lvGivT~~Did~l~~~~~~~~~~~~~~~~ 93 (590)
+|+++ |++ +++++++++|+.+|+++|.+++++++||+ |++ .|+++|++|.+ |++..
T Consensus 21 ~v~~i---M~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~--~~~lvGivt~~--dl~~~-------------- 79 (153)
T 3oco_A 21 VASDV---MVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADND--KDKIIGYAYNY--DIVRQ-------------- 79 (153)
T ss_dssp BHHHH---SEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTE--EEEEEEEEEHH--HHHHH--------------
T ss_pred EeeeE---ecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCC--CCcEEEEEEHH--HHHhH--------------
Confidence 45555 996 89999999999999999999999999999 541 16999999999 44310
Q ss_pred ccccccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHHcCCcEEEEcCCCCchHHHHHHHHHhh
Q psy1056 94 PLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIK 173 (590)
Q Consensus 94 ~l~~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~~~~dvv~~~~~~~~~~~~~~~v~~vk 173 (590)
+... .
T Consensus 80 -~~~~---------------------------~----------------------------------------------- 84 (153)
T 3oco_A 80 -ARID---------------------------D----------------------------------------------- 84 (153)
T ss_dssp -HHHH---------------------------T-----------------------------------------------
T ss_pred -HhcC---------------------------C-----------------------------------------------
Confidence 0000 0
Q ss_pred hcCCCcccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhh
Q psy1056 174 KEYPDMQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVD 238 (590)
Q Consensus 174 ~~~~~~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~ 238 (590)
. .+..++| .++.+ ++++.++++.| .++++..+||+++ +|+++|+||..|+.
T Consensus 85 ~-~~v~~~m-~~~~~v~~~~~l~~~~~~m---------~~~~~~~lpVvd~---~g~~vGivt~~dil 138 (153)
T 3oco_A 85 K-AKISTIM-RDIVSVPENMKVPDVMEEM---------SAHRVPMAIVIDE---YGGTSGIITDKDVY 138 (153)
T ss_dssp T-SBGGGTC-BCCEEEETTSBHHHHHHHH---------HHTTCSCEEEECT---TSCEEEEECHHHHH
T ss_pred C-CcHHHHh-CCCeEECCCCCHHHHHHHH---------HHcCCcEEEEEeC---CCCEEEEeeHHHHH
Confidence 0 1112355 33333 78899999999 9999999999998 79999999999997
|
| >2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.09 E-value=1.4e-10 Score=103.18 Aligned_cols=51 Identities=29% Similarity=0.427 Sum_probs=45.8
Q ss_pred hhhcccCccc---cCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEecccc
Q psy1056 17 KVKKYKHGFI---RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74 (590)
Q Consensus 17 ~vk~~~~~m~---~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Di 74 (590)
+|+++ |. ++++++++++|+.+|+++|.+++++++||+| + |+++|++|.+|+
T Consensus 7 ~v~~i---m~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~---~~~~Givt~~dl 60 (135)
T 2rc3_A 7 TVKHL---LQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMK-D---EKLVGILTERDF 60 (135)
T ss_dssp BHHHH---HHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEE-T---TEEEEEEEHHHH
T ss_pred eHHHH---HhcCCCCcEEECCCCcHHHHHHHHHhcCCCEEEEEE-C---CEEEEEEehHHH
Confidence 45555 98 8999999999999999999999999999999 4 699999999953
|
| >1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A | Back alignment and structure |
|---|
Probab=99.09 E-value=1.7e-10 Score=108.78 Aligned_cols=113 Identities=15% Similarity=0.219 Sum_probs=86.8
Q ss_pred CccccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccccccccCCCCCCCCccCCcccccccccccC
Q psy1056 23 HGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKDLSSPLTKKITLA 102 (590)
Q Consensus 23 ~~m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Did~l~~~~~~~~~~~~~~~~~l~~~~~~~ 102 (590)
++|.++++++++++|+.+|+++|.+++++++||+|++ |+++|++|.+| ++..+.. . . ...
T Consensus 13 ~im~~~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~---g~~vGivt~~d--l~~~~~~-----~-------~-~~~-- 72 (184)
T 1pvm_A 13 KIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDN---GNDVGLLSERS--IIKRFIP-----R-------N-KKP-- 72 (184)
T ss_dssp GTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECTT---SCEEEEEEHHH--HHHHTGG-----G-------C-CCG--
T ss_pred HhcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC---CcEEEEEeHHH--HHHHHhh-----c-------c-cCc--
Confidence 4499999999999999999999999999999999876 79999999994 4311000 0 0 000
Q ss_pred CceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHHcCCcEEEEcCCCCchHHHHHHHHHhhhcCCCcccc
Q psy1056 103 APLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVI 182 (590)
Q Consensus 103 ~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~im 182 (590)
.. .+..++|
T Consensus 73 ----------------------------------------------------------------------~~-~~v~~im 81 (184)
T 1pvm_A 73 ----------------------------------------------------------------------DE-VPIRLVM 81 (184)
T ss_dssp ----------------------------------------------------------------------GG-SBGGGTS
T ss_pred ----------------------------------------------------------------------cc-CCHHHHh
Confidence 00 1122355
Q ss_pred cccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhh
Q psy1056 183 GGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVD 238 (590)
Q Consensus 183 ~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~ 238 (590)
..++.+ ++++.++++.| .+++++.+||+|+ +|+++|+||.+|+.
T Consensus 82 ~~~~~~v~~~~~l~~a~~~m---------~~~~~~~lpVvd~---~g~~~Givt~~dll 128 (184)
T 1pvm_A 82 RKPIPKVKSDYDVKDVAAYL---------SENGLERCAVVDD---PGRVVGIVTLTDLS 128 (184)
T ss_dssp BSSCCEEETTCBHHHHHHHH---------HHHTCSEEEEECT---TCCEEEEEEHHHHT
T ss_pred CCCCcEECCCCCHHHHHHHH---------HHcCCcEEEEEcC---CCeEEEEEEHHHHH
Confidence 544433 78899999999 9999999999998 69999999999997
|
| >1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.09 E-value=8.6e-11 Score=102.85 Aligned_cols=51 Identities=25% Similarity=0.272 Sum_probs=45.9
Q ss_pred hhhcccCccccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEecccc
Q psy1056 17 KVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74 (590)
Q Consensus 17 ~vk~~~~~m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Di 74 (590)
+|+++ |.++++++++++|+.+|+++|.+++++.+||+| + |+++|++|.+|+
T Consensus 2 ~v~~~---m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~---~~~~G~it~~dl 52 (125)
T 1pbj_A 2 RVEDV---MVTDVDTIDITASLEDVLRNYVENAKGSSVVVK-E---GVRVGIVTTWDV 52 (125)
T ss_dssp CHHHH---CBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEE-T---TEEEEEEEHHHH
T ss_pred CHHHh---cCCCceEECCCCcHHHHHHHHHHcCCCEEEEEe-C---CeeEEEEeHHHH
Confidence 35555 999999999999999999999999999999999 5 699999999943
|
| >2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A | Back alignment and structure |
|---|
Probab=99.08 E-value=7.5e-11 Score=105.83 Aligned_cols=55 Identities=16% Similarity=0.171 Sum_probs=48.4
Q ss_pred hhhcccCccccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEecccc
Q psy1056 17 KVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74 (590)
Q Consensus 17 ~vk~~~~~m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Di 74 (590)
++++..-+|.++++++++++|+.+|+++|.+++++++||+|++ |+++|++|.+|+
T Consensus 9 ~v~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~---~~~~Givt~~dl 63 (144)
T 2nyc_A 9 PIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDEN---GYLINVYEAYDV 63 (144)
T ss_dssp BGGGSSCCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT---CBEEEEEEHHHH
T ss_pred chhhcCCCCCCCceEECCCCcHHHHHHHHHHcCcceeeEEcCC---CcEEEEEcHHHH
Confidence 4555433699999999999999999999999999999999976 799999999953
|
| >4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.1e-10 Score=106.77 Aligned_cols=51 Identities=20% Similarity=0.356 Sum_probs=44.0
Q ss_pred hhhcccCccc------cCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEecccc
Q psy1056 17 KVKKYKHGFI------RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74 (590)
Q Consensus 17 ~vk~~~~~m~------~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Di 74 (590)
+|+++ |. ++++++++++|+.+|+++|.+++++.+||+|+ |+++|++|.+|+
T Consensus 8 ~v~di---m~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~~----~~~~Givt~~dl 64 (157)
T 4fry_A 8 TVAQI---LKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVDG----DDIAGIVTERDY 64 (157)
T ss_dssp BHHHH---HHHSTTTTCCCCEEETTSBHHHHHHHHHHHTCSEEEEESS----SSEEEEEEHHHH
T ss_pred HHHHH---HhcccccCCCCeEECCCCcHHHHHHHHHHcCCCEEEEeeC----CEEEEEEEHHHH
Confidence 45555 88 44599999999999999999999999999764 599999999953
|
| >3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=99.08 E-value=7.6e-10 Score=108.29 Aligned_cols=124 Identities=16% Similarity=0.103 Sum_probs=88.8
Q ss_pred HHHHHHHHHcCCcEEEEecCCCc-hhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCcc
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGN-SIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQ 410 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~-~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~ 410 (590)
.+.+..+.++|+|++.++.+... +....+.++.+++. +.++++ ++.+.+.++++.++|+|+|-+.+..... +..
T Consensus 91 ~~~i~~~~~~Gad~V~l~~~~~~~p~~l~~~i~~~~~~--g~~v~~-~v~t~eea~~a~~~Gad~Ig~~~~g~t~--~~~ 165 (232)
T 3igs_A 91 LDDVDALAQAGAAIIAVDGTARQRPVAVEALLARIHHH--HLLTMA-DCSSVDDGLACQRLGADIIGTTMSGYTT--PDT 165 (232)
T ss_dssp HHHHHHHHHHTCSEEEEECCSSCCSSCHHHHHHHHHHT--TCEEEE-ECCSHHHHHHHHHTTCSEEECTTTTSSS--SSC
T ss_pred HHHHHHHHHcCCCEEEECccccCCHHHHHHHHHHHHHC--CCEEEE-eCCCHHHHHHHHhCCCCEEEEcCccCCC--CCC
Confidence 45567788999999999887542 34566777777765 666655 8999999999999999999332211000 000
Q ss_pred ccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccC
Q psy1056 411 VIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAG 464 (590)
Q Consensus 411 ~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~ 464 (590)
..+.....+.++. .. ++|+|++|||.|+.|+.+++++|||+|++|+.|..
T Consensus 166 ~~~~~~~~i~~l~---~~-~ipvIA~GGI~t~~d~~~~~~~GadgV~VGsal~~ 215 (232)
T 3igs_A 166 PEEPDLPLVKALH---DA-GCRVIAEGRYNSPALAAEAIRYGAWAVTVGSAITR 215 (232)
T ss_dssp CSSCCHHHHHHHH---HT-TCCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHC
T ss_pred CCCCCHHHHHHHH---hc-CCcEEEECCCCCHHHHHHHHHcCCCEEEEehHhcC
Confidence 0111333333333 33 79999999999999999999999999999999964
|
| >3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=8.4e-10 Score=115.82 Aligned_cols=174 Identities=18% Similarity=0.180 Sum_probs=113.2
Q ss_pred EEeEeeccc-------hhHHHHHHHHHHcCCcEEEEecCCCc---------hhhHHHHHHHHHHhC--------------
Q psy1056 320 IVGAAIGTR-------EADKNRLKLLSQAGVDVVILDSSQGN---------SIYQIEMIKFIKKEY-------------- 369 (590)
Q Consensus 320 ~v~a~i~~~-------~~~~e~~~~li~~gad~i~V~~~~G~---------~~~~l~~i~~i~~~~-------------- 369 (590)
+++.+++.. +++.+.++.+.+. +|++.||.+-.+ .+.+.+.++.+++..
T Consensus 183 ~vgvnIg~nk~t~~~~~Dy~~~a~~l~~~-ad~ieiNiScPNt~Gl~~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~~~~ 261 (415)
T 3i65_A 183 IVGVSIGKNKDTVNIVDDLKYCINKIGRY-ADYIAINVSSPNTPGLRDNQEAGKLKNIILSVKEEIDNLEKNNIMNDEFL 261 (415)
T ss_dssp EEEEEECCCTTCSCHHHHHHHHHHHHGGG-CSEEEEECCCCC--------CCHHHHHHHHHHHHHHHHHHHHCCSCHHHH
T ss_pred eEEEEeccccCccccHHHHHHHHHHHHhh-CCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHhhccccccccccc
Confidence 456666543 2344445555444 999999875322 223345666666531
Q ss_pred -----CCce-EEeccccC------cHHHHHHHHCCCCEEEEcccccccC---------CCcccccc---chhHHHHHHHH
Q psy1056 370 -----PDMQ-VIGGNVLF------GYQPRATLLNFIYQIEMIKFIKKEY---------PDMQVIGR---NGTAVYRVAEY 425 (590)
Q Consensus 370 -----~~vp-vi~g~v~s------~~~a~~l~~~Gvd~i~v~~~~~~~~---------~~~~~~g~---~~~~l~~~~~~ 425 (590)
.++| |.+|=-.. .+-|+.+.++|+|+|.+++.+.++. .|+.|... +...+.++++.
T Consensus 262 ~~~~~~~~P~V~VKi~pd~~~~~i~~iA~~a~~aGaDgIiv~Ntt~~r~dl~~~~~~~GGlSG~a~~p~al~~I~~v~~~ 341 (415)
T 3i65_A 262 WFNTTKKKPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNY 341 (415)
T ss_dssp CCSSSSSCCEEEEEECSCCCHHHHHHHHHHHHHHTCSEEEECCCBSCCCCCGGGTTCCSEEEEGGGHHHHHHHHHHHHHH
T ss_pred ccccCCCCCeEEEEecCCCCHHHHHHHHHHHHHcCCcEEEEeCCCcccccccccccccCCcCCccchHHHHHHHHHHHHH
Confidence 2578 78774442 3457888999999997765443220 01112111 12233444433
Q ss_pred HhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchh
Q psy1056 426 ASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRY 505 (590)
Q Consensus 426 ~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~ 505 (590)
+. .++|||+.|||+|+.|+.+++.+|||+|++|+.+. |.|
T Consensus 342 v~-~~iPIIg~GGI~s~eDa~e~l~aGAd~VqIgra~l-------------------~~G-------------------- 381 (415)
T 3i65_A 342 TN-KQIPIIASGGIFSGLDALEKIEAGASVCQLYSCLV-------------------FNG-------------------- 381 (415)
T ss_dssp TT-TCSCEEECSSCCSHHHHHHHHHHTEEEEEESHHHH-------------------HHG--------------------
T ss_pred hC-CCCCEEEECCCCCHHHHHHHHHcCCCEEEEcHHHH-------------------hcC--------------------
Confidence 22 15999999999999999999999999999999872 111
Q ss_pred hhccccceeecccceeEEeeCCchhchHHHHHhhhhhhCcccCcCcHHHHHHh
Q psy1056 506 FHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRAM 558 (590)
Q Consensus 506 ~~~~~~~~~~~eg~~~~~~~~~~~~~~~~~~~~~l~~~m~~~G~~~i~~l~~~ 558 (590)
-.++..+..+|+..|...|+.+|+|++..
T Consensus 382 ------------------------P~~~~~i~~~L~~~l~~~G~~si~e~~G~ 410 (415)
T 3i65_A 382 ------------------------MKSAVQIKRELNHLLYQRGYYNLKEAIGR 410 (415)
T ss_dssp ------------------------GGHHHHHHHHHHHHHHHTTCSSSTTTTTT
T ss_pred ------------------------HHHHHHHHHHHHHHHHHcCCCCHHHHhCh
Confidence 02477888999999999999999999865
|
| >1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.07 E-value=2.2e-10 Score=104.86 Aligned_cols=52 Identities=15% Similarity=0.258 Sum_probs=46.7
Q ss_pred HhhhcccCccccCCEEECCCCCHHHHHHHHHHcCccc-eeeccCCcccceeEEEEecccc
Q psy1056 16 LKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCG-FPVTENGKLGEKLLGIVTSRDV 74 (590)
Q Consensus 16 ~~vk~~~~~m~~~~vtv~~~~ti~eA~~lM~~~~i~~-lpVvd~~~~~~~lvGivT~~Di 74 (590)
.+|+++ |.++++++++++|+.+|+++|.++++++ +||+|++ +++|++|.+|+
T Consensus 16 ~~v~~i---m~~~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~~----~~vGivt~~dl 68 (157)
T 1o50_A 16 KDVCKL---ISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDN----KLVGMIPVMHL 68 (157)
T ss_dssp HHHTTS---SCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETT----EEEEEEEHHHH
T ss_pred ccHhhc---ccCCCceECCCCCHHHHHHHHHhCCCCccEEEEECC----EEEEEEEHHHH
Confidence 345555 9999999999999999999999999999 9999985 99999999953
|
| >2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.07 E-value=1e-10 Score=115.84 Aligned_cols=51 Identities=27% Similarity=0.432 Sum_probs=45.6
Q ss_pred CccccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEecccc
Q psy1056 23 HGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74 (590)
Q Consensus 23 ~~m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Di 74 (590)
++|+++++|+++++|+.+|+++|.+++++++||||++ ..++++|+||.+|+
T Consensus 17 diMt~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~-~~~~LvGiIt~~dl 67 (250)
T 2d4z_A 17 DIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTP-DTNTLLGSIDRTEV 67 (250)
T ss_dssp SSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCT-TTCBEEEEEEHHHH
T ss_pred HhcCCCCeEECCCCCHHHHHHHHHhcCCCEEEEEecC-CCCeEEEEEEHHHH
Confidence 4499999999999999999999999999999999963 11589999999975
|
| >3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=9.3e-09 Score=107.87 Aligned_cols=131 Identities=19% Similarity=0.168 Sum_probs=92.1
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcc-c-c---ccc
Q psy1056 331 DKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIK-F-I---KKE 405 (590)
Q Consensus 331 ~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~-~-~---~~~ 405 (590)
..+.++.+.+.|++++.++..... .+.++.+++. +++++. .+.+.+.++.+.++|+|+|.+.. . . +..
T Consensus 111 ~~~~~~~~~~~g~~~V~~~~g~~~----~~~i~~~~~~--g~~v~~-~v~t~~~a~~a~~~GaD~i~v~g~~~GGh~g~~ 183 (369)
T 3bw2_A 111 YDAKLAVLLDDPVPVVSFHFGVPD----REVIARLRRA--GTLTLV-TATTPEEARAVEAAGADAVIAQGVEAGGHQGTH 183 (369)
T ss_dssp HHHHHHHHHHSCCSEEEEESSCCC----HHHHHHHHHT--TCEEEE-EESSHHHHHHHHHTTCSEEEEECTTCSEECCCS
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCc----HHHHHHHHHC--CCeEEE-ECCCHHHHHHHHHcCCCEEEEeCCCcCCcCCCc
Confidence 456778888999999988653321 3456666664 677665 68899999999999999997621 1 0 000
Q ss_pred CCCc--ccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCCCCCCCc
Q psy1056 406 YPDM--QVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAPGE 471 (590)
Q Consensus 406 ~~~~--~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~~es~~~ 471 (590)
.... .+++. +...+.++ .+..++|||++|||+++.++.+++++|||+|++|+.|..+.|++..
T Consensus 184 ~~~~~~~~~~~~~~~~l~~i---~~~~~iPViaaGGI~~~~~~~~~l~~GAd~V~vGs~~~~~~e~~~~ 249 (369)
T 3bw2_A 184 RDSSEDDGAGIGLLSLLAQV---REAVDIPVVAAGGIMRGGQIAAVLAAGADAAQLGTAFLATDESGAP 249 (369)
T ss_dssp SCCGGGTTCCCCHHHHHHHH---HHHCSSCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHTSTTCCCC
T ss_pred ccccccccccccHHHHHHHH---HHhcCceEEEECCCCCHHHHHHHHHcCCCEEEEChHHhCCcccCcc
Confidence 0000 01112 23333333 3335799999999999999999999999999999999999998765
|
| >2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=2.1e-09 Score=111.01 Aligned_cols=128 Identities=23% Similarity=0.226 Sum_probs=94.2
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCcc
Q psy1056 331 DKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQ 410 (590)
Q Consensus 331 ~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~ 410 (590)
..+.++.+.+.|++++.++.. .+ .+.++++++. +++++. .+.+.++++.+.++|+|+|.+. +....|..
T Consensus 85 ~~~~~~~~~~~g~d~V~~~~g--~p---~~~~~~l~~~--gi~vi~-~v~t~~~a~~~~~~GaD~i~v~---g~~~GG~~ 153 (328)
T 2gjl_A 85 YAEYRAAIIEAGIRVVETAGN--DP---GEHIAEFRRH--GVKVIH-KCTAVRHALKAERLGVDAVSID---GFECAGHP 153 (328)
T ss_dssp HHHHHHHHHHTTCCEEEEEES--CC---HHHHHHHHHT--TCEEEE-EESSHHHHHHHHHTTCSEEEEE---CTTCSBCC
T ss_pred HHHHHHHHHhcCCCEEEEcCC--Cc---HHHHHHHHHc--CCCEEe-eCCCHHHHHHHHHcCCCEEEEE---CCCCCcCC
Confidence 356778888999999988653 23 3556667665 688874 6889999999999999999652 11100111
Q ss_pred cccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCCCCCCCc
Q psy1056 411 VIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAPGE 471 (590)
Q Consensus 411 ~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~~es~~~ 471 (590)
|. ....+..+.+..+..++|||++|||+++.++.+++++|||+|++|+.|..+.||+++
T Consensus 154 --G~~~~~~~~~l~~v~~~~~iPviaaGGI~~~~~v~~al~~GAdgV~vGs~~~~~~e~~~~ 213 (328)
T 2gjl_A 154 --GEDDIPGLVLLPAAANRLRVPIIASGGFADGRGLVAALALGADAINMGTRFLATRECPIH 213 (328)
T ss_dssp --CSSCCCHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHTSSSSCSC
T ss_pred --CCccccHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEECHHHHcCcccccc
Confidence 11 112333344444445799999999999999999999999999999999999998776
|
| >2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=99.04 E-value=2e-10 Score=104.85 Aligned_cols=50 Identities=22% Similarity=0.383 Sum_probs=45.4
Q ss_pred cCcccc--CCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEecccc
Q psy1056 22 KHGFIR--DPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74 (590)
Q Consensus 22 ~~~m~~--~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Di 74 (590)
+++|.+ +++++++++|+.+|+++|.+++++++||+|++ |+++|++|.+|+
T Consensus 14 ~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~---~~~~Givt~~dl 65 (157)
T 2emq_A 14 KPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTS---YKLHGLISMTMM 65 (157)
T ss_dssp TTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTT---CCEEEEEEHHHH
T ss_pred HhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcCC---CCEEEEeeHHHH
Confidence 345987 89999999999999999999999999999976 799999999953
|
| >1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=99.03 E-value=1e-09 Score=116.75 Aligned_cols=125 Identities=17% Similarity=0.108 Sum_probs=85.8
Q ss_pred Cce-EEeccccC--cHH----HHHHHHCCCCEEEEcccccccCC---------CccccccchhHHHHHHHHHhcC--CCc
Q psy1056 371 DMQ-VIGGNVLF--GYQ----PRATLLNFIYQIEMIKFIKKEYP---------DMQVIGRNGTAVYRVAEYASRR--GVP 432 (590)
Q Consensus 371 ~vp-vi~g~v~s--~~~----a~~l~~~Gvd~i~v~~~~~~~~~---------~~~~~g~~~~~l~~~~~~~~~~--~v~ 432 (590)
++| |++|--.. .++ |+.+.++|+|+|.++..+....+ |+.|....+.++..+++..+.. ++|
T Consensus 296 ~~P~V~vKispd~~~ed~~~iA~~~~~aGaDgI~v~ntt~~~~d~~~~~~~~GGlSG~~~~~~sl~~i~~v~~~v~~~iP 375 (443)
T 1tv5_A 296 KKPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIP 375 (443)
T ss_dssp SCCEEEEEECSCCCHHHHHHHHHHHHHTTCSEEEECCCBSCCCCCGGGTTCCSEEEEHHHHHHHHHHHHHHHHHTTTCSC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEECCCcccccccccccccCCcCCCcchHHHHHHHHHHHHHcCCCCc
Confidence 578 88774432 224 88899999999988654432100 1111111111222333333333 699
Q ss_pred EEecCCCCCHHHHHHHHHcCCCEEEECccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccc
Q psy1056 433 VIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDK 512 (590)
Q Consensus 433 iia~GGi~~~~di~kalalGA~~v~~g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~ 512 (590)
||+.|||+|+.|+.+++++|||+|++|+.|. |.|
T Consensus 376 VIg~GGI~s~~DA~e~l~aGAd~Vqigrall-------------------~~g--------------------------- 409 (443)
T 1tv5_A 376 IIASGGIFSGLDALEKIEAGASVCQLYSCLV-------------------FNG--------------------------- 409 (443)
T ss_dssp EEEESSCCSHHHHHHHHHTTEEEEEESHHHH-------------------HHG---------------------------
T ss_pred EEEECCCCCHHHHHHHHHcCCCEEEEcHHHH-------------------hcC---------------------------
Confidence 9999999999999999999999999999872 001
Q ss_pred eeecccceeEEeeCCchhchHHHHHhhhhhhCcccCcCcHHHHHHh
Q psy1056 513 LKVAQGVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRAM 558 (590)
Q Consensus 513 ~~~~eg~~~~~~~~~~~~~~~~~~~~~l~~~m~~~G~~~i~~l~~~ 558 (590)
-.++..+..+|+..|...|+.+++|++..
T Consensus 410 -----------------P~l~~~i~~~l~~~l~~~G~~si~e~~G~ 438 (443)
T 1tv5_A 410 -----------------MKSAVQIKRELNHLLYQRGYYNLKEAIGR 438 (443)
T ss_dssp -----------------GGHHHHHHHHHHHHHHHHTCSSSGGGTTT
T ss_pred -----------------hHHHHHHHHHHHHHHHHhCCCCHHHHhhh
Confidence 02477888899999999999999999865
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=1.3e-09 Score=129.02 Aligned_cols=174 Identities=17% Similarity=0.144 Sum_probs=119.2
Q ss_pred EEeEee--cc-chhHHHHHHHHHHcCCcEEEEecC--C------------CchhhHHHHHHHHHHhCCCceEEeccccCc
Q psy1056 320 IVGAAI--GT-READKNRLKLLSQAGVDVVILDSS--Q------------GNSIYQIEMIKFIKKEYPDMQVIGGNVLFG 382 (590)
Q Consensus 320 ~v~a~i--~~-~~~~~e~~~~li~~gad~i~V~~~--~------------G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~ 382 (590)
.+.+++ +. ..+..+.++.+.++|+|++.++.+ + .+...+.+.++++++.. ++|+++|-..+.
T Consensus 636 ~~i~~i~~g~~~~~~~~~a~~~~~~g~d~iein~~~P~~~~~~~~G~~~~~~~~~~~~iv~~v~~~~-~~Pv~vK~~~~~ 714 (1025)
T 1gte_A 636 IVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQAV-QIPFFAKLTPNV 714 (1025)
T ss_dssp EEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCBCCCC-----SBGGGCHHHHHHHHHHHHHHC-SSCEEEEECSCS
T ss_pred CeEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCcccccccCHHHHHHHHHHHHHhh-CCceEEEeCCCh
Confidence 455555 32 345556777777899999999853 1 12244678899999887 799999876643
Q ss_pred ----HHHHHHHHCCCCEEEEcccc-------------------cccC-CCccccccchhHHHHHHHHHhcC-CCcEEecC
Q psy1056 383 ----YQPRATLLNFIYQIEMIKFI-------------------KKEY-PDMQVIGRNGTAVYRVAEYASRR-GVPVIADG 437 (590)
Q Consensus 383 ----~~a~~l~~~Gvd~i~v~~~~-------------------~~~~-~~~~~~g~~~~~l~~~~~~~~~~-~v~iia~G 437 (590)
+.|+.+.++|+|+|.+++.. .+.. +++.+-...+.++..+.+..+.. ++|||++|
T Consensus 715 ~~~~~~a~~~~~~G~d~i~v~Nt~~~~~~~~~~~~~~~~~~~~gr~~~gg~sg~~~~~~~~~~v~~v~~~~~~ipvi~~G 794 (1025)
T 1gte_A 715 TDIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVTTIARALPGFPILATG 794 (1025)
T ss_dssp SCHHHHHHHHHHHTCSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCCEEEESGGGHHHHHHHHHHHHHHSTTCCEEEES
T ss_pred HHHHHHHHHHHHcCCCEEEEeccccccccccccccccccccccccccCCCCCcccchhHHHHHHHHHHHHcCCCCEEEec
Confidence 44889999999999883211 0000 00111000011122233333334 69999999
Q ss_pred CCCCHHHHHHHHHcCCCEEEECccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecc
Q psy1056 438 GVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQ 517 (590)
Q Consensus 438 Gi~~~~di~kalalGA~~v~~g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~e 517 (590)
||+|+.|+.++|++|||+|++|+.+.. ++
T Consensus 795 GI~s~~da~~~l~~Ga~~v~vg~~~l~-------------------~~-------------------------------- 823 (1025)
T 1gte_A 795 GIDSAESGLQFLHSGASVLQVCSAVQN-------------------QD-------------------------------- 823 (1025)
T ss_dssp SCCSHHHHHHHHHTTCSEEEESHHHHT-------------------SC--------------------------------
T ss_pred CcCCHHHHHHHHHcCCCEEEEeecccc-------------------CC--------------------------------
Confidence 999999999999999999999998831 01
Q ss_pred cceeEEeeCCchhchHHHHHhhhhhhCcccCcCcHHHHHH
Q psy1056 518 GVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRA 557 (590)
Q Consensus 518 g~~~~~~~~~~~~~~~~~~~~~l~~~m~~~G~~~i~~l~~ 557 (590)
-.+++.+..+|+..|...|+.+++||+.
T Consensus 824 ------------~~~~~~~~~~l~~~l~~~G~~~i~~l~g 851 (1025)
T 1gte_A 824 ------------FTVIQDYCTGLKALLYLKSIEELQGWDG 851 (1025)
T ss_dssp ------------TTHHHHHHHHHHHHHHHTTCGGGTTSBT
T ss_pred ------------ccHHHHHHHHHHHHHHHcCCCCHHHHhC
Confidence 0347788899999999999999999876
|
| >3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.03 E-value=4.7e-10 Score=104.90 Aligned_cols=53 Identities=15% Similarity=0.204 Sum_probs=45.3
Q ss_pred hcccCccc--cCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 19 KKYKHGFI--RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 19 k~~~~~m~--~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
.+++++|+ ++++++++++|+.+|+++|.+++++++||+|++ .++++|+||.+|
T Consensus 36 ~~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~--~~~lvGivt~~D 90 (173)
T 3ocm_A 36 RSIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGS--LDEVVGIGRAKD 90 (173)
T ss_dssp SCSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSS--TTSEEEEEEHHH
T ss_pred CCHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCC--CCCEEEEEEHHH
Confidence 34456797 478899999999999999999999999999853 159999999994
|
| >1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.03 E-value=2.7e-10 Score=104.45 Aligned_cols=52 Identities=17% Similarity=0.399 Sum_probs=46.8
Q ss_pred hhhcccCcccc--CCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEecccc
Q psy1056 17 KVKKYKHGFIR--DPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74 (590)
Q Consensus 17 ~vk~~~~~m~~--~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Di 74 (590)
+|+++ |.+ +++++++++|+.+|+++|.+++++++||+|++ |+++|++|.+|+
T Consensus 15 ~v~~i---m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~---~~lvGivt~~dl 68 (159)
T 1yav_A 15 TVGQF---MIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPS---YRLHGLIGTNMI 68 (159)
T ss_dssp BHHHH---SEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTT---CBEEEEEEHHHH
T ss_pred hHHHH---hCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECCC---CCEEEEeEHHHH
Confidence 45554 988 89999999999999999999999999999976 799999999953
|
| >2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.01 E-value=2.3e-10 Score=105.11 Aligned_cols=52 Identities=21% Similarity=0.438 Sum_probs=46.7
Q ss_pred hhhcccCccccCCEEECCCCCHHHHHHHHHHcCccceeeccC--CcccceeEEEEecccc
Q psy1056 17 KVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTEN--GKLGEKLLGIVTSRDV 74 (590)
Q Consensus 17 ~vk~~~~~m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~--~~~~~~lvGivT~~Di 74 (590)
+|+++ |.++++++++++|+.+|+++|.+++++++||+|+ + |+++|++|.+|+
T Consensus 14 ~v~di---m~~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~---~~~~Givt~~dl 67 (164)
T 2pfi_A 14 RVEHF---MNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTES---QILVGIVQRAQL 67 (164)
T ss_dssp BHHHH---CBCCCCCEETTCBHHHHHHHHHTCCCSEEEEESCTTT---CBEEEEEEHHHH
T ss_pred CHHHH---cCCCCeEECCCCcHHHHHHHHHhCCCCceeEEecCCC---CEEEEEEEHHHH
Confidence 45555 9999999999999999999999999999999996 5 799999999953
|
| >4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=9.8e-10 Score=113.75 Aligned_cols=166 Identities=16% Similarity=0.053 Sum_probs=110.2
Q ss_pred hhHHHHHHHHH---HcCCcEEEEecC--C--C------chhhHHHHHHHHHHhCCCceEEecccc--CcHH----HHHHH
Q psy1056 329 EADKNRLKLLS---QAGVDVVILDSS--Q--G------NSIYQIEMIKFIKKEYPDMQVIGGNVL--FGYQ----PRATL 389 (590)
Q Consensus 329 ~~~~e~~~~li---~~gad~i~V~~~--~--G------~~~~~l~~i~~i~~~~~~vpvi~g~v~--s~~~----a~~l~ 389 (590)
+++.+.++.+. +.++|.+.+|.+ + | +.+.+.+.++.+++.. ++||.+|--. +.++ ++.+.
T Consensus 139 ~d~~~~a~~l~~~~~~g~d~ielNisCPn~~gg~~l~~~~e~~~~il~av~~~~-~~PV~vKi~p~~d~~~~~~~a~~~~ 217 (354)
T 4ef8_A 139 RENVEMCKRLAAVATEKGVILELNLSCPNVPGKPQVAYDFDAMRQCLTAVSEVY-PHSFGVKMPPYFDFAHFDAAAEILN 217 (354)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEEEECSSCCSTTSCCGGGSHHHHHHHHHHHHHHC-CSCEEEEECCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhcCCCEEEEeCCCCCCCCchhhccCHHHHHHHHHHHHHhh-CCCeEEEecCCCCHHHHHHHHHHHH
Confidence 34455566665 568999999864 2 1 2344567888888887 7899987444 2222 33444
Q ss_pred HCC-CCEEEEcccc---------ccc-----C---CCccccccchhHHHHHHHHHhcC-CCcEEecCCCCCHHHHHHHHH
Q psy1056 390 LNF-IYQIEMIKFI---------KKE-----Y---PDMQVIGRNGTAVYRVAEYASRR-GVPVIADGGVQSVGHVMKALA 450 (590)
Q Consensus 390 ~~G-vd~i~v~~~~---------~~~-----~---~~~~~~g~~~~~l~~~~~~~~~~-~v~iia~GGi~~~~di~kala 450 (590)
++| +|+|.+.+.+ ++. . .|+.|-.+.+.++..+.+..+.. ++|||+.|||+|+.|+.+++.
T Consensus 218 ~~Gg~d~I~~~NT~~~g~~idi~~~~~~~~~~~~~gGlSG~~i~p~a~~~i~~v~~~~~~ipII~~GGI~s~~da~~~l~ 297 (354)
T 4ef8_A 218 EFPKVQFITCINSIGNGLVIDAETESVVIKPKQGFGGLGGRYVLPTALANINAFYRRCPGKLIFGCGGVYTGEDAFLHVL 297 (354)
T ss_dssp TCTTEEEEEECCCEEEEECEETTTTEESCSGGGGEEEEEGGGGHHHHHHHHHHHHHHCTTSEEEEESCCCSHHHHHHHHH
T ss_pred hCCCccEEEEecccCcceeeeccCCccccccccccCCCCCCCCchHHHHHHHHHHHhCCCCCEEEECCcCCHHHHHHHHH
Confidence 787 9999653211 110 0 00111111122333344443333 599999999999999999999
Q ss_pred cCCCEEEECccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecccceeEEeeCCchh
Q psy1056 451 LGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVL 530 (590)
Q Consensus 451 lGA~~v~~g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~~ 530 (590)
+|||+||+|+.+. |.| -
T Consensus 298 aGAd~V~vgra~l-------------------~~G--------------------------------------------P 314 (354)
T 4ef8_A 298 AGASMVQVGTALQ-------------------EEG--------------------------------------------P 314 (354)
T ss_dssp HTEEEEEECHHHH-------------------HHC--------------------------------------------T
T ss_pred cCCCEEEEhHHHH-------------------HhC--------------------------------------------H
Confidence 9999999999772 000 0
Q ss_pred chHHHHHhhhhhhCcccCcCcHHHHHHh
Q psy1056 531 RFLPYLQCGLKHGCQDIGAKSLSNLRAM 558 (590)
Q Consensus 531 ~~~~~~~~~l~~~m~~~G~~~i~~l~~~ 558 (590)
.++.++..+|+..|...|+.+++||+..
T Consensus 315 ~~~~~i~~~l~~~m~~~G~~si~el~G~ 342 (354)
T 4ef8_A 315 SIFERLTSELLGVMAKKRYQTLDEFRGK 342 (354)
T ss_dssp THHHHHHHHHHHHHHHHTCCSGGGTTTC
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 2477889999999999999999999876
|
| >2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=98.99 E-value=4.5e-10 Score=113.75 Aligned_cols=106 Identities=22% Similarity=0.349 Sum_probs=85.4
Q ss_pred CccccCCEEECCCCCHHHHHHHHHHc-----CccceeeccCCcccceeEEEEeccccccccCCCCCCCCccCCccccccc
Q psy1056 23 HGFIRDPVCIAPSTTLGKVLQMKKQH-----GFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKDLSSPLTK 97 (590)
Q Consensus 23 ~~m~~~~vtv~~~~ti~eA~~lM~~~-----~i~~lpVvd~~~~~~~lvGivT~~Did~l~~~~~~~~~~~~~~~~~l~~ 97 (590)
++|+++++++++++|+.+|++.|.++ +++++||+|++ ++++|++|.+ +++..+ ...++
T Consensus 141 ~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~---~~lvGivt~~--dll~~~----------~~~~v-- 203 (286)
T 2oux_A 141 AIMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQE---NHLVGVISLR--DLIVND----------DDTLI-- 203 (286)
T ss_dssp HHCBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTT---CBEEEEEEHH--HHTTSC----------TTSBH--
T ss_pred HhCCCCceEECCCCcHHHHHHHHHHcccCccceeEEEEEcCC---CeEEEEEEHH--HHHcCC----------CCCcH--
Confidence 46999999999999999999999998 88999999976 7999999999 554210 00000
Q ss_pred ccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHHcCCcEEEEcCCCCchHHHHHHHHHhhhcCC
Q psy1056 98 KITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYP 177 (590)
Q Consensus 98 ~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~ 177 (590)
.
T Consensus 204 ---------------------------------------------------------------------------~---- 204 (286)
T 2oux_A 204 ---------------------------------------------------------------------------A---- 204 (286)
T ss_dssp ---------------------------------------------------------------------------H----
T ss_pred ---------------------------------------------------------------------------H----
Confidence 0
Q ss_pred Ccccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhh
Q psy1056 178 DMQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVD 238 (590)
Q Consensus 178 ~~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~ 238 (590)
++|..++.+ ++++.++++.| .++++..+||+|+ +|+++|+||..|+.
T Consensus 205 --~im~~~~~~v~~~~~l~ea~~~m---------~~~~~~~lpVVd~---~g~lvGiIT~~Dil 254 (286)
T 2oux_A 205 --DILNERVISVHVGDDQEDVAQTI---------RDYDFLAVPVTDY---DDHLLGIVTVDDII 254 (286)
T ss_dssp --HHSBSCCCCEETTSBHHHHHHHH---------HHHTCSEEEEECT---TCBEEEEEEHHHHH
T ss_pred --HHcCCCCeeecCCCCHHHHHHHH---------HHcCCcEEEEEcC---CCeEEEEEEHHHHH
Confidence 144333333 78899999999 9999999999998 79999999999997
|
| >3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ... | Back alignment and structure |
|---|
Probab=98.99 E-value=5.9e-09 Score=108.66 Aligned_cols=156 Identities=13% Similarity=0.073 Sum_probs=102.2
Q ss_pred HcCCcEEEEecCC----Cc-----hhhHHHHHHHHHHh---C---CCceEEeccccC------cHHHHHHHHCCCCEEEE
Q psy1056 340 QAGVDVVILDSSQ----GN-----SIYQIEMIKFIKKE---Y---PDMQVIGGNVLF------GYQPRATLLNFIYQIEM 398 (590)
Q Consensus 340 ~~gad~i~V~~~~----G~-----~~~~l~~i~~i~~~---~---~~vpvi~g~v~s------~~~a~~l~~~Gvd~i~v 398 (590)
...+|.+.++.+- |. ...+.+.++.+++. . .++||++|--.. .+-|+.+.++|+|+|.+
T Consensus 174 ~~~ad~ielNisCPn~~G~~~l~~~~~l~~ll~av~~~~~~~~~~~~~Pv~vKi~p~~~~~~~~~ia~~~~~aGadgi~v 253 (367)
T 3zwt_A 174 GPLADYLVVNVSSPNTAGLRSLQGKAELRRLLTKVLQERDGLRRVHRPAVLVKIAPDLTSQDKEDIASVVKELGIDGLIV 253 (367)
T ss_dssp GGGCSEEEEECCCTTSTTGGGGGSHHHHHHHHHHHHHHHHTSCGGGCCEEEEEECSCCCHHHHHHHHHHHHHHTCCEEEE
T ss_pred hhhCCEEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHhhccccCCceEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 3468999998642 21 12234555555542 1 268999885442 23578888999999977
Q ss_pred ccccc-ccC----------CCccccccchhHHHHHHHHHhcC--CCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCC
Q psy1056 399 IKFIK-KEY----------PDMQVIGRNGTAVYRVAEYASRR--GVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGT 465 (590)
Q Consensus 399 ~~~~~-~~~----------~~~~~~g~~~~~l~~~~~~~~~~--~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~ 465 (590)
+..+. +.. .|+.|-.+.+.++..+.+..+.. ++|||+.|||+|+.|+.+++.+|||+||+|+.+.
T Consensus 254 ~ntt~~r~~~~~~~~~~~~gGlSG~~i~p~a~~~v~~i~~~v~~~ipvI~~GGI~s~~da~~~l~~GAd~V~vgra~l-- 331 (367)
T 3zwt_A 254 TNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQLYTALT-- 331 (367)
T ss_dssp CCCBSCCCTTCCCTTTTSSSEEEEGGGHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHH--
T ss_pred eCCCcccccccccccccccCCcCCcccchhHHHHHHHHHHHcCCCceEEEECCCCCHHHHHHHHHcCCCEEEECHHHH--
Confidence 54331 110 01111111111223333333333 6999999999999999999999999999999772
Q ss_pred CCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecccceeEEeeCCchhchHHHHHhhhhhhCc
Q psy1056 466 SEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCGLKHGCQ 545 (590)
Q Consensus 466 ~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~~~~~~~~~~~l~~~m~ 545 (590)
|.| -.++..+..+|+..|.
T Consensus 332 -----------------~~g--------------------------------------------P~~~~~i~~~l~~~m~ 350 (367)
T 3zwt_A 332 -----------------FWG--------------------------------------------PPVVGKVKRELEALLK 350 (367)
T ss_dssp -----------------HHC--------------------------------------------THHHHHHHHHHHHHHH
T ss_pred -----------------hcC--------------------------------------------cHHHHHHHHHHHHHHH
Confidence 001 0247788899999999
Q ss_pred ccCcCcHHHHHHh
Q psy1056 546 DIGAKSLSNLRAM 558 (590)
Q Consensus 546 ~~G~~~i~~l~~~ 558 (590)
..|+.+++|++..
T Consensus 351 ~~G~~~i~e~~G~ 363 (367)
T 3zwt_A 351 EQGFGGVTDAIGA 363 (367)
T ss_dssp HTTCSSHHHHTTG
T ss_pred HcCCCCHHHhhCc
Confidence 9999999999865
|
| >2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A | Back alignment and structure |
|---|
Probab=98.98 E-value=8.4e-10 Score=119.54 Aligned_cols=126 Identities=20% Similarity=0.305 Sum_probs=98.4
Q ss_pred cCCCCCHHHHHHHHHhhhccc-----CccccCCEEECCCCCHHHHHHHHHHc-----CccceeeccCCcccceeEEEEec
Q psy1056 2 IHHNCTPEYQANEVLKVKKYK-----HGFIRDPVCIAPSTTLGKVLQMKKQH-----GFCGFPVTENGKLGEKLLGIVTS 71 (590)
Q Consensus 2 ~~~~~~~~~~~~~~~~vk~~~-----~~m~~~~vtv~~~~ti~eA~~lM~~~-----~i~~lpVvd~~~~~~~lvGivT~ 71 (590)
+|+.|+. .+...+..+.++. ++|+++++++++++|+.+|++.|+++ +++++||+|++ ++++|++|.
T Consensus 134 ll~~l~~-~~~~~i~~~l~~~~~~v~~iM~~~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~---~~lvGiVt~ 209 (473)
T 2zy9_A 134 LKDLLDP-RTRAEVEALARYEEDEAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEK---GRLKGVLSL 209 (473)
T ss_dssp HTTSSCH-HHHHHHHHHHTSCTTBSTTTCBSCEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECTT---SBEEEEEEH
T ss_pred HHhcCCH-HHHHHHHHHhcCCCCCHHHhCCCCceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECCC---CcEEEEEEH
Confidence 4567776 4556666676665 58999999999999999999999986 68999999986 799999999
Q ss_pred cccccccCCCCCCCCccCCcccccccccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHHcCCc
Q psy1056 72 RDVDFLENSANMDLKIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVD 151 (590)
Q Consensus 72 ~Did~l~~~~~~~~~~~~~~~~~l~~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~~~~d 151 (590)
+ |++..+ ...++
T Consensus 210 ~--Dll~~~----------~~~~v-------------------------------------------------------- 221 (473)
T 2zy9_A 210 R--DLIVAD----------PRTRV-------------------------------------------------------- 221 (473)
T ss_dssp H--HHHHSC----------TTSBG--------------------------------------------------------
T ss_pred H--HHhcCC----------CCCcH--------------------------------------------------------
Confidence 9 554210 00111
Q ss_pred EEEEcCCCCchHHHHHHHHHhhhcCCCcccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeE
Q psy1056 152 VVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKL 228 (590)
Q Consensus 152 vv~~~~~~~~~~~~~~~v~~vk~~~~~~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~l 228 (590)
.++|++++.+ ++++.++++.| .++++..+||+|+ +|++
T Consensus 222 ---------------------------~dim~~~~~~v~~~~~l~ea~~~m---------~~~~~~~lpVVDe---~g~l 262 (473)
T 2zy9_A 222 ---------------------------AEIMNPKVVYVRTDTDQEEVARLM---------ADYDFTVLPVVDE---EGRL 262 (473)
T ss_dssp ---------------------------GGTSBSSCCCEESSSBHHHHHHHH---------HHHTCSEEEEECT---TSBE
T ss_pred ---------------------------HHHhCCCCeEEeCCCcHHHHHHHH---------HhcCCcEEEEEcC---CCEE
Confidence 1245433333 77889999999 9999999999998 7999
Q ss_pred EEEEecchhh
Q psy1056 229 LGIVTSRDVD 238 (590)
Q Consensus 229 vGivt~~Dl~ 238 (590)
+|+||.+|+.
T Consensus 263 vGiIT~~Dil 272 (473)
T 2zy9_A 263 VGIVTVDDVL 272 (473)
T ss_dssp EEEEEHHHHH
T ss_pred EEEEehHhhH
Confidence 9999999997
|
| >2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=2.7e-10 Score=106.97 Aligned_cols=53 Identities=23% Similarity=0.401 Sum_probs=46.4
Q ss_pred HhhhcccCccccC----CEEE--CCCCCHHHHHHHHHHcCccceeec--cCCcccceeEEEEecccc
Q psy1056 16 LKVKKYKHGFIRD----PVCI--APSTTLGKVLQMKKQHGFCGFPVT--ENGKLGEKLLGIVTSRDV 74 (590)
Q Consensus 16 ~~vk~~~~~m~~~----~vtv--~~~~ti~eA~~lM~~~~i~~lpVv--d~~~~~~~lvGivT~~Di 74 (590)
.+|+++ |.++ ++++ ++++|+.+|+++|.+++++++||+ |++ |+++|++|.+|+
T Consensus 11 ~~v~di---m~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~---~~lvGiit~~dl 71 (185)
T 2j9l_A 11 TLAMDV---MKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRES---QRLVGFVLRRDL 71 (185)
T ss_dssp CBHHHH---SBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTT---CBEEEEEEHHHH
T ss_pred CcHHHH---hcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECCC---CeEEEEEEHHHH
Confidence 345555 9987 7889 999999999999999999999999 665 799999999964
|
| >1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=98.97 E-value=7.2e-09 Score=100.80 Aligned_cols=128 Identities=13% Similarity=0.182 Sum_probs=90.7
Q ss_pred HHHHHHHHHcCCcEEEEecCCCch--hhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEccc-ccccCCC
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGNS--IYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKF-IKKEYPD 408 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~~--~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~-~~~~~~~ 408 (590)
.+.++.+.++|++.++++...... ..+.+.++.+++.+|+.++++ ++.+.++++++.++|+|+|.+... .+.. .
T Consensus 78 ~~~i~~~~~~Gad~v~l~~~~~~~p~~~~~~~i~~~~~~~~~~~v~~-~~~t~~e~~~~~~~G~d~i~~~~~g~t~~--~ 154 (223)
T 1y0e_A 78 SKEVDELIESQCEVIALDATLQQRPKETLDELVSYIRTHAPNVEIMA-DIATVEEAKNAARLGFDYIGTTLHGYTSY--T 154 (223)
T ss_dssp HHHHHHHHHHTCSEEEEECSCSCCSSSCHHHHHHHHHHHCTTSEEEE-ECSSHHHHHHHHHTTCSEEECTTTTSSTT--S
T ss_pred HHHHHHHHhCCCCEEEEeeecccCcccCHHHHHHHHHHhCCCceEEe-cCCCHHHHHHHHHcCCCEEEeCCCcCcCC--C
Confidence 355667788999999987654221 245678899999887777765 788999999999999999944221 1111 0
Q ss_pred ccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 409 MQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 409 ~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
.... .....+..+++..+..++|+|++|||+|+.++.+++++|||+|++|+.|.
T Consensus 155 ~~~~-~~~~~~~~~~~~~~~~~ipvia~GGI~~~~~~~~~~~~Gad~v~vG~al~ 208 (223)
T 1y0e_A 155 QGQL-LYQNDFQFLKDVLQSVDAKVIAEGNVITPDMYKRVMDLGVHCSVVGGAIT 208 (223)
T ss_dssp TTCC-TTHHHHHHHHHHHHHCCSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHH
T ss_pred CCCC-CCcccHHHHHHHHhhCCCCEEEecCCCCHHHHHHHHHcCCCEEEEChHHc
Confidence 0000 01112233444444457999999999999999999999999999999884
|
| >2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A | Back alignment and structure |
|---|
Probab=98.97 E-value=9.3e-10 Score=110.92 Aligned_cols=107 Identities=20% Similarity=0.264 Sum_probs=86.0
Q ss_pred cCccccCCEEECCCCCHHHHHHHHHHc-----CccceeeccCCcccceeEEEEeccccccccCCCCCCCCccCCcccccc
Q psy1056 22 KHGFIRDPVCIAPSTTLGKVLQMKKQH-----GFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKDLSSPLT 96 (590)
Q Consensus 22 ~~~m~~~~vtv~~~~ti~eA~~lM~~~-----~i~~lpVvd~~~~~~~lvGivT~~Did~l~~~~~~~~~~~~~~~~~l~ 96 (590)
.++|+++++++++++|+.+|++.|.++ +++++||+|++ ++++|++|.+ +++..+ ..
T Consensus 138 ~~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~~---~~lvGivt~~--dll~~~----------~~---- 198 (278)
T 2yvy_A 138 GGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEK---GRLKGVLSLR--DLIVAD----------PR---- 198 (278)
T ss_dssp GGTCBSCCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECTT---CBEEEEEEHH--HHHHSC----------TT----
T ss_pred HhhcCCCceEECCCCcHHHHHHHHHHccCCccceeEEEEECCC---CCEEEEEEHH--HHhcCC----------CC----
Confidence 357999999999999999999999997 79999999976 7999999999 554210 00
Q ss_pred cccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHHcCCcEEEEcCCCCchHHHHHHHHHhhhcC
Q psy1056 97 KKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEY 176 (590)
Q Consensus 97 ~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~~~~dvv~~~~~~~~~~~~~~~v~~vk~~~ 176 (590)
.
T Consensus 199 -------------------------------------------------------------------------------~ 199 (278)
T 2yvy_A 199 -------------------------------------------------------------------------------T 199 (278)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred -------------------------------------------------------------------------------C
Confidence 0
Q ss_pred CCcccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhh
Q psy1056 177 PDMQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVD 238 (590)
Q Consensus 177 ~~~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~ 238 (590)
+..++|..++.+ ++++.++++.| .++++..+||+|+ +|+++|+||..|+.
T Consensus 200 ~v~~im~~~~~~v~~~~~l~~a~~~m---------~~~~~~~lpVvd~---~g~lvGivT~~Dil 252 (278)
T 2yvy_A 200 RVAEIMNPKVVYVRTDTDQEEVARLM---------ADYDFTVLPVVDE---EGRLVGIVTVDDVL 252 (278)
T ss_dssp BSTTTSBSSCCCEETTSBHHHHHHHH---------HHHTCSEEEEECT---TSBEEEEEEHHHHH
T ss_pred cHHHHhCCCCeEEeCCCCHHHHHHHH---------HhcCCCEEEEEeC---CCeEEEEEEHHHHH
Confidence 011244433333 77889999999 9999999999998 69999999999997
|
| >2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=6.7e-09 Score=107.35 Aligned_cols=127 Identities=20% Similarity=0.145 Sum_probs=92.4
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCcc
Q psy1056 331 DKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQ 410 (590)
Q Consensus 331 ~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~ 410 (590)
..+.++.+.+.|++.+.++.. .+. +.++.+++. ++|+++ .+.+.+.++.+.++|+|+|.+.. ....+..
T Consensus 77 ~~~~~~~a~~~g~d~V~~~~g--~p~---~~i~~l~~~--g~~v~~-~v~~~~~a~~~~~~GaD~i~v~g---~~~GG~~ 145 (332)
T 2z6i_A 77 VEDIVDLVIEEGVKVVTTGAG--NPS---KYMERFHEA--GIIVIP-VVPSVALAKRMEKIGADAVIAEG---MEAGGHI 145 (332)
T ss_dssp HHHHHHHHHHTTCSEEEECSS--CGG---GTHHHHHHT--TCEEEE-EESSHHHHHHHHHTTCSCEEEEC---TTSSEEC
T ss_pred HHHHHHHHHHCCCCEEEECCC--ChH---HHHHHHHHc--CCeEEE-EeCCHHHHHHHHHcCCCEEEEEC---CCCCCCC
Confidence 456788888999999988653 332 345566654 688876 47899999999999999996631 1100111
Q ss_pred ccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCCCCCCCc
Q psy1056 411 VIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAPGE 471 (590)
Q Consensus 411 ~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~~es~~~ 471 (590)
|...+...+.++. +..++|||++|||.++.++.+++++|||+|++|+.|..+.|++..
T Consensus 146 g~~~~~~ll~~i~---~~~~iPViaaGGI~~~~~~~~al~~GAdgV~vGs~~l~~~e~~~~ 203 (332)
T 2z6i_A 146 GKLTTMTLVRQVA---TAISIPVIAAGGIADGEGAAAGFMLGAEAVQVGTRFVVAKESNAH 203 (332)
T ss_dssp CSSCHHHHHHHHH---HHCSSCEEEESSCCSHHHHHHHHHTTCSEEEECHHHHTBTTCCSC
T ss_pred CCccHHHHHHHHH---HhcCCCEEEECCCCCHHHHHHHHHcCCCEEEecHHHhcCcccccc
Confidence 1011333333443 334799999999999999999999999999999999999999843
|
| >3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=98.92 E-value=7.7e-10 Score=124.15 Aligned_cols=53 Identities=13% Similarity=0.279 Sum_probs=47.3
Q ss_pred HhhhcccCccc--cCCEEECCCCCHHHHHHHHH-HcCccceeeccCCcccceeEEEEecccc
Q psy1056 16 LKVKKYKHGFI--RDPVCIAPSTTLGKVLQMKK-QHGFCGFPVTENGKLGEKLLGIVTSRDV 74 (590)
Q Consensus 16 ~~vk~~~~~m~--~~~vtv~~~~ti~eA~~lM~-~~~i~~lpVvd~~~~~~~lvGivT~~Di 74 (590)
.+|++. |+ ++++++++++|+.|++++|. +++++++||+|++ ++++|++|.+|+
T Consensus 453 ~~V~di---M~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~~---~~lvGiVt~~DL 508 (632)
T 3org_A 453 MTAREI---MHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDAN---GYLLGAISRKEI 508 (632)
T ss_dssp SBHHHH---CBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCTT---CBBCCEESHHHH
T ss_pred CcHHHH---hhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEecC---CeEEEEEEHHHH
Confidence 345555 99 89999999999999999999 8999999999976 799999999964
|
| >3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.90 E-value=2.9e-09 Score=109.87 Aligned_cols=166 Identities=17% Similarity=0.155 Sum_probs=109.0
Q ss_pred hhHHHHHHHHHHcCCc-EEEEecC--C--C------chhhHHHHHHHHHHhCCCceEEecccc---CcHHHHHHHHCCCC
Q psy1056 329 EADKNRLKLLSQAGVD-VVILDSS--Q--G------NSIYQIEMIKFIKKEYPDMQVIGGNVL---FGYQPRATLLNFIY 394 (590)
Q Consensus 329 ~~~~e~~~~li~~gad-~i~V~~~--~--G------~~~~~l~~i~~i~~~~~~vpvi~g~v~---s~~~a~~l~~~Gvd 394 (590)
+++.+.++.+.+++++ .+.++.+ + | +.+.+.+.++.+++.. ++||.+|=-. ..+-++.+.++|++
T Consensus 141 ~d~~~~a~~l~~~g~~d~ielNisCPn~~G~~~l~~~~e~l~~il~av~~~~-~~PV~vKi~p~~~~~~~a~~~~~aga~ 219 (345)
T 3oix_A 141 EETHTILXMVEASKYQGLVELNLSCPNVPGXPQIAYDFETTDQILSEVFTYF-TKPLGIKLPPYFDIVHFDQAAAIFNXY 219 (345)
T ss_dssp HHHHHHHHHHHHSSCCSEEEEECSCCCSTTCCCGGGCHHHHHHHHHHHTTTC-CSCEEEEECCCCCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhccCCCcEEEEecCCCCcCCchhhcCCHHHHHHHHHHHHHHh-CCCeEEEECCCCCHHHHHHHHHHhCCC
Confidence 4555667777778876 9999864 2 1 2244567777777766 6899987433 34455666777777
Q ss_pred EEEE---c--------ccccccCC-Cccc-ccc-----chhHHHHHHHHHhcC--CCcEEecCCCCCHHHHHHHHHcCCC
Q psy1056 395 QIEM---I--------KFIKKEYP-DMQV-IGR-----NGTAVYRVAEYASRR--GVPVIADGGVQSVGHVMKALALGAS 454 (590)
Q Consensus 395 ~i~v---~--------~~~~~~~~-~~~~-~g~-----~~~~l~~~~~~~~~~--~v~iia~GGi~~~~di~kalalGA~ 454 (590)
+|++ . ++..+..- .-.. .|+ .+.++..+.+..+.. ++|||+.|||+|+.|+.+++.+|||
T Consensus 220 ~i~~int~nt~g~~~~i~~~~~~~~~~~~~gGlSG~ai~p~a~~~v~~i~~~~~~~ipIIg~GGI~s~~da~~~l~aGAd 299 (345)
T 3oix_A 220 PLTFVNCINSIGNGLVIEDETVVIXPKNGFGGIGGDYVKPTALANVHAFYKRLNPSIQIIGTGGVXTGRDAFEHILCGAS 299 (345)
T ss_dssp CCSEEEECCCEEEEECEETTEESCSGGGGEEEEEEGGGHHHHHHHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHHTCS
T ss_pred ceEEEEeecccccceeeccCccccccccccCCcCCccccHHHHHHHHHHHHHcCCCCcEEEECCCCChHHHHHHHHhCCC
Confidence 6643 1 11111000 0001 122 111233444444444 5999999999999999999999999
Q ss_pred EEEECccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecccceeEEeeCCchhchHH
Q psy1056 455 TAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLP 534 (590)
Q Consensus 455 ~v~~g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~~~~~~ 534 (590)
+|++|+.|. |.| -.++.
T Consensus 300 ~V~igra~~-------------------~~g--------------------------------------------P~~~~ 316 (345)
T 3oix_A 300 MVQIGTALH-------------------QEG--------------------------------------------PQIFK 316 (345)
T ss_dssp EEEESHHHH-------------------HHC--------------------------------------------THHHH
T ss_pred EEEEChHHH-------------------hcC--------------------------------------------hHHHH
Confidence 999999862 011 02477
Q ss_pred HHHhhhhhhCcccCcCcHHHHHHh
Q psy1056 535 YLQCGLKHGCQDIGAKSLSNLRAM 558 (590)
Q Consensus 535 ~~~~~l~~~m~~~G~~~i~~l~~~ 558 (590)
.+..+|+..|...|+++++|++..
T Consensus 317 ~i~~~L~~~l~~~G~~si~e~~G~ 340 (345)
T 3oix_A 317 RITKELXAIMTEKGYETLEDFRGK 340 (345)
T ss_dssp HHHHHHHHHHHHHTCCSGGGTTTC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHhH
Confidence 888999999999999999999865
|
| >1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=98.84 E-value=1.4e-08 Score=105.20 Aligned_cols=131 Identities=15% Similarity=0.052 Sum_probs=84.4
Q ss_pred HHHHHHHHHHcCCcEEEEecCC----Cc-----hhhHHHHHHHHHHhC--------CCceEEeccccC------cHHHHH
Q psy1056 331 DKNRLKLLSQAGVDVVILDSSQ----GN-----SIYQIEMIKFIKKEY--------PDMQVIGGNVLF------GYQPRA 387 (590)
Q Consensus 331 ~~e~~~~li~~gad~i~V~~~~----G~-----~~~~l~~i~~i~~~~--------~~vpvi~g~v~s------~~~a~~ 387 (590)
..+.++.+. .++|.+.++.+. |. .....+.++++++.. +++|+++|-... .+-|+.
T Consensus 155 ~~~aa~~~~-~g~d~iein~~sP~~~g~~~~~~~~~~~~il~~vr~~~~~~~~~~g~~~Pv~vKi~~~~~~~~~~~~a~~ 233 (336)
T 1f76_A 155 YLICMEKIY-AYAGYIAINISSPNTPGLRTLQYGEALDDLLTAIKNKQNDLQAMHHKYVPIAVKIAPDLSEEELIQVADS 233 (336)
T ss_dssp HHHHHHHHG-GGCSEEEEECCCSSSTTGGGGGSHHHHHHHHHHHHHHHHHHHHHHTSCCCEEEECCSCCCHHHHHHHHHH
T ss_pred HHHHHHHHh-ccCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHHhhhhcccccCceEEEecCCCCHHHHHHHHHH
Confidence 334444443 489999888632 11 233457778887765 268999985442 333789
Q ss_pred HHHCCCCEEEEcccccccCC-----Ccccc-cc--------chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCC
Q psy1056 388 TLLNFIYQIEMIKFIKKEYP-----DMQVI-GR--------NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGA 453 (590)
Q Consensus 388 l~~~Gvd~i~v~~~~~~~~~-----~~~~~-g~--------~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA 453 (590)
+.++|+|+|.|+..+....+ ....+ |+ +...+.++++.+. .++|||++|||+|+.|+.++|++||
T Consensus 234 l~~~Gvd~i~vsn~~~~~~~~~~~~~~~~~gg~~g~~~~~~~~~~i~~i~~~~~-~~ipVi~~GGI~~~~da~~~l~~GA 312 (336)
T 1f76_A 234 LVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLSLELN-GRLPIIGVGGIDSVIAAREKIAAGA 312 (336)
T ss_dssp HHHTTCSEEEECCCBCCCTTSTTSTTTTCSSEEEEGGGHHHHHHHHHHHHHHHT-TSSCEEEESSCCSHHHHHHHHHHTC
T ss_pred HHHcCCcEEEEeCCcccccccccccccccCCCcCCchhHHHHHHHHHHHHHHhC-CCCCEEEECCCCCHHHHHHHHHCCC
Confidence 99999999988654311100 00111 11 1122333443332 1699999999999999999999999
Q ss_pred CEEEECcccc
Q psy1056 454 STAMMGSLLA 463 (590)
Q Consensus 454 ~~v~~g~~l~ 463 (590)
|+|++|+.|.
T Consensus 313 d~V~igr~~l 322 (336)
T 1f76_A 313 SLVQIYSGFI 322 (336)
T ss_dssp SEEEESHHHH
T ss_pred CEEEeeHHHH
Confidence 9999999873
|
| >3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=4.7e-09 Score=115.42 Aligned_cols=50 Identities=24% Similarity=0.407 Sum_probs=45.7
Q ss_pred ccCccccCCEEECCC-CCHHHHHHHHHHcCccceeecc-CCcccceeEEEEeccc
Q psy1056 21 YKHGFIRDPVCIAPS-TTLGKVLQMKKQHGFCGFPVTE-NGKLGEKLLGIVTSRD 73 (590)
Q Consensus 21 ~~~~m~~~~vtv~~~-~ti~eA~~lM~~~~i~~lpVvd-~~~~~~~lvGivT~~D 73 (590)
++++|++++++++++ +|+.+|+++|.+++++++||+| ++ ++++|+||.+|
T Consensus 386 V~diM~~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~---g~lvGiVt~~D 437 (527)
T 3pc3_A 386 IAELELPAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDD---GSVLGVVGQET 437 (527)
T ss_dssp GGGGCCCCCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTT---CCEEEEEEHHH
T ss_pred HHHhCcCCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCC---CEEEEEEEHHH
Confidence 344599999999999 9999999999999999999999 55 79999999994
|
| >1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=98.80 E-value=2e-08 Score=103.12 Aligned_cols=125 Identities=12% Similarity=0.096 Sum_probs=87.9
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCC----------C-----chhhHHHHHHHHHHhCCCceEEec---cccC---cHHHHH
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQ----------G-----NSIYQIEMIKFIKKEYPDMQVIGG---NVLF---GYQPRA 387 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~----------G-----~~~~~l~~i~~i~~~~~~vpvi~g---~v~s---~~~a~~ 387 (590)
+...+.++.+.++ +|.+.++..- | +...+.+.++.+++.+ +.||.+| ++.. .+.|+.
T Consensus 71 ~~~~~aa~~a~~~-~d~Iein~gcP~~~~r~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~G~~~~~~~~~a~~ 148 (318)
T 1vhn_A 71 NELSEAARILSEK-YKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKSV-SGKFSVKTRLGWEKNEVEEIYRI 148 (318)
T ss_dssp HHHHHHHHHHTTT-CSEEEEEECCCCHHHHHTTCGGGGGSCHHHHHHHHHHHHHHC-SSEEEEEEESCSSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHh-CCEEEEECCCCcHhcCCCCcccchhhCHHHHHHHHHHHHHhh-CCCEEEEecCCCChHHHHHHHHH
Confidence 3455677777778 9999988522 1 2345678899999988 5899988 4432 268999
Q ss_pred HHHCCCCEEEEcccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHH-cCCCEEEECccccC
Q psy1056 388 TLLNFIYQIEMIKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALA-LGASTAMMGSLLAG 464 (590)
Q Consensus 388 l~~~Gvd~i~v~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kala-lGA~~v~~g~~l~~ 464 (590)
+.++|+|+|.|...+... ++. |. ....+.+++ + ++|||++|||+|+.|+.++++ .|||+||+|+++..
T Consensus 149 l~~~G~d~i~v~g~~~~~--~~~--~~~~~~~i~~i~----~-~ipVi~~GgI~s~~da~~~l~~~gad~V~iGR~~l~ 218 (318)
T 1vhn_A 149 LVEEGVDEVFIHTRTVVQ--SFT--GRAEWKALSVLE----K-RIPTFVSGDIFTPEDAKRALEESGCDGLLVARGAIG 218 (318)
T ss_dssp HHHTTCCEEEEESSCTTT--TTS--SCCCGGGGGGSC----C-SSCEEEESSCCSHHHHHHHHHHHCCSEEEESGGGTT
T ss_pred HHHhCCCEEEEcCCCccc--cCC--CCcCHHHHHHHH----c-CCeEEEECCcCCHHHHHHHHHcCCCCEEEECHHHHh
Confidence 999999999774221111 111 11 222222222 2 699999999999999999999 79999999998853
|
| >1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=98.78 E-value=3.9e-08 Score=96.32 Aligned_cols=124 Identities=16% Similarity=0.275 Sum_probs=89.1
Q ss_pred HHHHHHHHHcCCcEEEEecCCCc-h--hhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEE--EcccccccC
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGN-S--IYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIE--MIKFIKKEY 406 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~-~--~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~--v~~~~~~~~ 406 (590)
.+.++.+.++|++.+.++..... . ....+.++.+++.+|+.++++ ++.+.++++.+.++|+|+|. +...+...
T Consensus 91 ~~~i~~~~~~Gad~V~l~~~~~~~~~~~~~~~~i~~i~~~~~~~~v~~-~~~t~~ea~~a~~~Gad~i~~~v~g~~~~~- 168 (234)
T 1yxy_A 91 MTEVDQLAALNIAVIAMDCTKRDRHDGLDIASFIRQVKEKYPNQLLMA-DISTFDEGLVAHQAGIDFVGTTLSGYTPYS- 168 (234)
T ss_dssp HHHHHHHHTTTCSEEEEECCSSCCTTCCCHHHHHHHHHHHCTTCEEEE-ECSSHHHHHHHHHTTCSEEECTTTTSSTTS-
T ss_pred HHHHHHHHHcCCCEEEEcccccCCCCCccHHHHHHHHHHhCCCCeEEE-eCCCHHHHHHHHHcCCCEEeeeccccCCCC-
Confidence 45677889999999998765322 1 245678899999887777655 78899999999999999982 21111100
Q ss_pred CCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 407 PDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 407 ~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
.++. +.. +..+++.... ++|++++|||+|+.++.+++++|||+|++|+.|.
T Consensus 169 ~~~~--~~~---~~~i~~~~~~-~ipvia~GGI~s~~~~~~~~~~Gad~v~vGsal~ 219 (234)
T 1yxy_A 169 RQEA--GPD---VALIEALCKA-GIAVIAEGKIHSPEEAKKINDLGVAGIVVGGAIT 219 (234)
T ss_dssp CCSS--SCC---HHHHHHHHHT-TCCEEEESCCCSHHHHHHHHTTCCSEEEECHHHH
T ss_pred cCCC--CCC---HHHHHHHHhC-CCCEEEECCCCCHHHHHHHHHCCCCEEEEchHHh
Confidence 0011 112 2233444434 7999999999999999999999999999999884
|
| >3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=98.74 E-value=2.3e-07 Score=92.21 Aligned_cols=182 Identities=12% Similarity=0.076 Sum_probs=119.6
Q ss_pred EcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCCCCCCcccCCceEEeEeeccchhHHHHHHHHHHcC
Q psy1056 263 AQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAG 342 (590)
Q Consensus 263 v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~g 342 (590)
+.++....+..+.+.+.+...+=|+++.+.+-| +..||........ -.++..-.+ . + ...+......|
T Consensus 75 i~~~~dp~~~A~~y~~~GA~~IsVltd~~~f~G--s~~~L~~ir~~v~------lPVl~Kdfi-~--d-~~qi~ea~~~G 142 (272)
T 3tsm_A 75 IRPDFDPPALAKAYEEGGAACLSVLTDTPSFQG--APEFLTAARQACS------LPALRKDFL-F--D-PYQVYEARSWG 142 (272)
T ss_dssp SCSSCCHHHHHHHHHHTTCSEEEEECCSTTTCC--CHHHHHHHHHTSS------SCEEEESCC-C--S-THHHHHHHHTT
T ss_pred cCCCCCHHHHHHHHHHCCCCEEEEeccccccCC--CHHHHHHHHHhcC------CCEEECCcc-C--C-HHHHHHHHHcC
Confidence 456778888999999999999999987776666 4455533321100 011111001 1 1 12355677899
Q ss_pred CcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHH
Q psy1056 343 VDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRV 422 (590)
Q Consensus 343 ad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~ 422 (590)
+|.+.+..+--....+.+.++..+. + ++.+++ +|.+.++++++.++|+|.|-+ +.|. ............++
T Consensus 143 AD~VlLi~a~L~~~~l~~l~~~a~~-l-Gl~~lv-evh~~eEl~~A~~~ga~iIGi---nnr~---l~t~~~dl~~~~~L 213 (272)
T 3tsm_A 143 ADCILIIMASVDDDLAKELEDTAFA-L-GMDALI-EVHDEAEMERALKLSSRLLGV---NNRN---LRSFEVNLAVSERL 213 (272)
T ss_dssp CSEEEEETTTSCHHHHHHHHHHHHH-T-TCEEEE-EECSHHHHHHHTTSCCSEEEE---ECBC---TTTCCBCTHHHHHH
T ss_pred CCEEEEcccccCHHHHHHHHHHHHH-c-CCeEEE-EeCCHHHHHHHHhcCCCEEEE---CCCC---CccCCCChHHHHHH
Confidence 9999987764332333444444444 4 666665 889999999999999998833 2233 22223323333344
Q ss_pred HHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCCC
Q psy1056 423 AEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTS 466 (590)
Q Consensus 423 ~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~~ 466 (590)
.+... .++|+|+.|||+|+.|+.++..+||++|.+|+.|..+.
T Consensus 214 ~~~ip-~~~~vIaesGI~t~edv~~l~~~Ga~gvLVG~almr~~ 256 (272)
T 3tsm_A 214 AKMAP-SDRLLVGESGIFTHEDCLRLEKSGIGTFLIGESLMRQH 256 (272)
T ss_dssp HHHSC-TTSEEEEESSCCSHHHHHHHHTTTCCEEEECHHHHTSS
T ss_pred HHhCC-CCCcEEEECCCCCHHHHHHHHHcCCCEEEEcHHHcCCc
Confidence 44433 26899999999999999999999999999999997654
|
| >4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} | Back alignment and structure |
|---|
Probab=98.73 E-value=1.2e-07 Score=91.90 Aligned_cols=108 Identities=19% Similarity=0.244 Sum_probs=88.6
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCC
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPD 408 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~ 408 (590)
+...+.++.+++.|++.+.+...... ..+.|+.+++.+|+..+.+|+|.+.++++.++++|+++| ++.+..
T Consensus 46 ~~a~~~a~al~~gGi~~iEvt~~t~~---a~e~I~~l~~~~~~~~iGaGTVlt~~~a~~Ai~AGA~fI-vsP~~~----- 116 (232)
T 4e38_A 46 EDIIPLGKVLAENGLPAAEITFRSDA---AVEAIRLLRQAQPEMLIGAGTILNGEQALAAKEAGATFV-VSPGFN----- 116 (232)
T ss_dssp GGHHHHHHHHHHTTCCEEEEETTSTT---HHHHHHHHHHHCTTCEEEEECCCSHHHHHHHHHHTCSEE-ECSSCC-----
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCCC---HHHHHHHHHHhCCCCEEeECCcCCHHHHHHHHHcCCCEE-EeCCCC-----
Confidence 35678899999999999999765433 478899999999888888999999999999999999999 433221
Q ss_pred ccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEE
Q psy1056 409 MQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMM 458 (590)
Q Consensus 409 ~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~ 458 (590)
.++.+++.+.++|+++ |+.|+.|+.+|+.+|||.|-+
T Consensus 117 -----------~~vi~~~~~~gi~~ip--Gv~TptEi~~A~~~Gad~vK~ 153 (232)
T 4e38_A 117 -----------PNTVRACQEIGIDIVP--GVNNPSTVEAALEMGLTTLKF 153 (232)
T ss_dssp -----------HHHHHHHHHHTCEEEC--EECSHHHHHHHHHTTCCEEEE
T ss_pred -----------HHHHHHHHHcCCCEEc--CCCCHHHHHHHHHcCCCEEEE
Confidence 2344555556899999 899999999999999999954
|
| >3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.70 E-value=1e-08 Score=80.61 Aligned_cols=43 Identities=26% Similarity=0.486 Sum_probs=40.1
Q ss_pred CCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEecccc
Q psy1056 28 DPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74 (590)
Q Consensus 28 ~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Di 74 (590)
.+++++|++|+.||+++|.+++++++||+|++ +++||+|.+|+
T Consensus 1 k~vtv~p~~tv~ea~~~M~~~~i~~~~V~d~~----~lvGIvT~~Di 43 (70)
T 3ghd_A 1 KAIVVQPKDTVDRVAKILSRNKAGSAVVMEGD----EILGVVTERDI 43 (70)
T ss_dssp CEEEECTTCBHHHHHHHHHHTTCSEEEEEETT----EEEEEEEHHHH
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEECC----EEEEEEEHHHH
Confidence 36899999999999999999999999999975 99999999965
|
| >3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=1.1e-07 Score=94.86 Aligned_cols=180 Identities=11% Similarity=0.132 Sum_probs=109.7
Q ss_pred EcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEe-ecccccccCCCCCCcccCCceEEeEeeccchhHHHHHHHHHHc
Q psy1056 263 AQAGISLEEANVILEKSKKGKLPILNDKGELIALIA-RTDLKKSRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQA 341 (590)
Q Consensus 263 v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit-~~dll~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~ 341 (590)
+.++....+..+.+.+.+...+=|+++++.+-|-.. ...+.+.... .++.. ....+ ...+......
T Consensus 68 i~~~~~p~~~A~~y~~~GA~~isvltd~~~f~Gs~~~l~~ir~~v~l---------Pvl~k-dfiid---~~qv~~A~~~ 134 (272)
T 3qja_A 68 LATIADPAKLAQAYQDGGARIVSVVTEQRRFQGSLDDLDAVRASVSI---------PVLRK-DFVVQ---PYQIHEARAH 134 (272)
T ss_dssp -----CHHHHHHHHHHTTCSEEEEECCGGGHHHHHHHHHHHHHHCSS---------CEEEE-SCCCS---HHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHcCCCEEEEecChhhcCCCHHHHHHHHHhCCC---------CEEEC-ccccC---HHHHHHHHHc
Confidence 455667788888899999999999887766655322 1111111111 11111 01111 1235566789
Q ss_pred CCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHH
Q psy1056 342 GVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYR 421 (590)
Q Consensus 342 gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~ 421 (590)
|+|.+++-.+.-....+.+.++..++ + ++.+++ ++.+.+++.++.++|+|+|-+. .+. ....+.....+.+
T Consensus 135 GAD~VlLi~a~l~~~~l~~l~~~a~~-l-Gl~~lv-ev~t~ee~~~A~~~Gad~IGv~---~r~---l~~~~~dl~~~~~ 205 (272)
T 3qja_A 135 GADMLLLIVAALEQSVLVSMLDRTES-L-GMTALV-EVHTEQEADRALKAGAKVIGVN---ARD---LMTLDVDRDCFAR 205 (272)
T ss_dssp TCSEEEEEGGGSCHHHHHHHHHHHHH-T-TCEEEE-EESSHHHHHHHHHHTCSEEEEE---SBC---TTTCCBCTTHHHH
T ss_pred CCCEEEEecccCCHHHHHHHHHHHHH-C-CCcEEE-EcCCHHHHHHHHHCCCCEEEEC---CCc---ccccccCHHHHHH
Confidence 99999885433222233444555444 4 666665 8889999999999999999543 222 1111222233333
Q ss_pred HHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCC
Q psy1056 422 VAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGT 465 (590)
Q Consensus 422 ~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~ 465 (590)
+.+... .++|+|+.|||+|+.|+.+++.+||++|.+|+.|..+
T Consensus 206 l~~~v~-~~~pvVaegGI~t~edv~~l~~~GadgvlVGsal~~a 248 (272)
T 3qja_A 206 IAPGLP-SSVIRIAESGVRGTADLLAYAGAGADAVLVGEGLVTS 248 (272)
T ss_dssp HGGGSC-TTSEEEEESCCCSHHHHHHHHHTTCSEEEECHHHHTC
T ss_pred HHHhCc-ccCEEEEECCCCCHHHHHHHHHcCCCEEEEcHHHhCC
Confidence 332221 1699999999999999999999999999999999644
|
| >3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.3e-08 Score=80.03 Aligned_cols=60 Identities=22% Similarity=0.346 Sum_probs=50.4
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhh--cc-ccccccccchhhccccCCCeeEE
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVD--FL-ENSANMDLKIEKVMTNVNEIISA 263 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~--~~-~~~~~~~~~V~~im~~~~~~~tv 263 (590)
++++.+|++.| .+++++++||+|+ ++++||+|.+|+. .. ........+|+++|++ +++|+
T Consensus 8 ~~tv~ea~~~M---------~~~~i~~~~V~d~----~~lvGIvT~~Di~~~~~~~~~~~~~~~V~~iMt~--~~iTV 70 (70)
T 3ghd_A 8 KDTVDRVAKIL---------SRNKAGSAVVMEG----DEILGVVTERDILDKVVAKGKNPKEVKVEEIMTK--NPVKI 70 (70)
T ss_dssp TCBHHHHHHHH---------HHTTCSEEEEEET----TEEEEEEEHHHHHHHTTTTTCCGGGCBGGGTCEE--CTTCC
T ss_pred CCcHHHHHHHH---------HHcCCCEEEEEEC----CEEEEEEEHHHHHHHHHhcCCCcccCCHHHhcCC--CCeEC
Confidence 88999999999 9999999999986 8999999999996 22 2333356899999998 87764
|
| >1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A | Back alignment and structure |
|---|
Probab=98.51 E-value=5.3e-07 Score=86.32 Aligned_cols=130 Identities=16% Similarity=0.092 Sum_probs=89.9
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCC-CceEEeccccCcHHHHHHHHCCCCEEEEcccccc---
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYP-DMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKK--- 404 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~-~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~--- 404 (590)
++..+.++.+.+.|++.+.++.... ...+.++.+++.+| +.++.++.+.+.++++.+.++|+|+| ++.....
T Consensus 22 ~~~~~~~~~~~~~G~~~iev~~~~~---~~~~~i~~ir~~~~~~~~ig~~~v~~~~~~~~a~~~Gad~i-v~~~~~~~~~ 97 (205)
T 1wa3_A 22 EEAKEKALAVFEGGVHLIEITFTVP---DADTVIKELSFLKEKGAIIGAGTVTSVEQCRKAVESGAEFI-VSPHLDEEIS 97 (205)
T ss_dssp HHHHHHHHHHHHTTCCEEEEETTST---THHHHHHHTHHHHHTTCEEEEESCCSHHHHHHHHHHTCSEE-ECSSCCHHHH
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCh---hHHHHHHHHHHHCCCCcEEEecccCCHHHHHHHHHcCCCEE-EcCCCCHHHH
Confidence 3455678888899999999876542 33556788887765 57777888889999999999999999 7322210
Q ss_pred ----------------cCC-------Cccccccc---hhHHHHHHHHHhcC-CCcEEecCCCCCHHHHHHHHHcCCCEEE
Q psy1056 405 ----------------EYP-------DMQVIGRN---GTAVYRVAEYASRR-GVPVIADGGVQSVGHVMKALALGASTAM 457 (590)
Q Consensus 405 ----------------~~~-------~~~~~g~~---~~~l~~~~~~~~~~-~v~iia~GGi~~~~di~kalalGA~~v~ 457 (590)
..+ |....... ...+..+.+..... ++|++++|||. +.++.+.+.+||++|.
T Consensus 98 ~~~~~~g~~vi~g~~t~~e~~~a~~~Gad~vk~~~~~~~g~~~~~~l~~~~~~~pvia~GGI~-~~~~~~~~~~Ga~~v~ 176 (205)
T 1wa3_A 98 QFCKEKGVFYMPGVMTPTELVKAMKLGHTILKLFPGEVVGPQFVKAMKGPFPNVKFVPTGGVN-LDNVCEWFKAGVLAVG 176 (205)
T ss_dssp HHHHHHTCEEECEECSHHHHHHHHHTTCCEEEETTHHHHHHHHHHHHHTTCTTCEEEEBSSCC-TTTHHHHHHHTCSCEE
T ss_pred HHHHHcCCcEECCcCCHHHHHHHHHcCCCEEEEcCccccCHHHHHHHHHhCCCCcEEEcCCCC-HHHHHHHHHCCCCEEE
Confidence 000 00000111 11123334444444 69999999995 7899999999999999
Q ss_pred ECcccc
Q psy1056 458 MGSLLA 463 (590)
Q Consensus 458 ~g~~l~ 463 (590)
+|+.+.
T Consensus 177 vGs~i~ 182 (205)
T 1wa3_A 177 VGSALV 182 (205)
T ss_dssp ECHHHH
T ss_pred ECcccc
Confidence 999884
|
| >1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1 | Back alignment and structure |
|---|
Probab=98.50 E-value=4e-07 Score=88.31 Aligned_cols=121 Identities=18% Similarity=0.163 Sum_probs=81.8
Q ss_pred HHHHHHH-c-CCcEEEEecC------CCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEccccccc
Q psy1056 334 RLKLLSQ-A-GVDVVILDSS------QGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKE 405 (590)
Q Consensus 334 ~~~~li~-~-gad~i~V~~~------~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~ 405 (590)
.++...+ . +-+.+-+..- ..+....++..+.+.+. +..++.--+.++..++++.++|++++-. .....
T Consensus 92 ~a~lare~~~~~~~iKlEv~~d~~~llpD~~~tv~aa~~L~~~--Gf~Vlpy~~dd~~~akrl~~~G~~aVmP--lg~pI 167 (265)
T 1wv2_A 92 TCRLARELLDGHNLVKLEVLADQKTLFPNVVETLKAAEQLVKD--GFDVMVYTSDDPIIARQLAEIGCIAVMP--LAGLI 167 (265)
T ss_dssp HHHHHHTTTTSCCEEEECCBSCTTTCCBCHHHHHHHHHHHHTT--TCEEEEEECSCHHHHHHHHHSCCSEEEE--CSSST
T ss_pred HHHHHHHHcCCCCeEEEEeecCccccCcCHHHHHHHHHHHHHC--CCEEEEEeCCCHHHHHHHHHhCCCEEEe--CCccC
Confidence 3444444 3 5666665442 13344455566666554 4555544677899999999999999922 01111
Q ss_pred CCCcccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccC
Q psy1056 406 YPDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAG 464 (590)
Q Consensus 406 ~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~ 464 (590)
-+|.|+ ++..+..+.+ ..++|||++|||.+|.|+++|+.||||+|++|+.+..
T Consensus 168 ---GsG~Gi~~~~lI~~I~e---~~~vPVI~eGGI~TPsDAa~AmeLGAdgVlVgSAI~~ 221 (265)
T 1wv2_A 168 ---GSGLGICNPYNLRIILE---EAKVPVLVDAGVGTASDAAIAMELGCEAVLMNTAIAH 221 (265)
T ss_dssp ---TCCCCCSCHHHHHHHHH---HCSSCBEEESCCCSHHHHHHHHHHTCSEEEESHHHHT
T ss_pred ---CCCCCcCCHHHHHHHHh---cCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEChHHhC
Confidence 123355 6555555544 3469999999999999999999999999999999974
|
| >3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=6.2e-07 Score=88.10 Aligned_cols=60 Identities=17% Similarity=0.359 Sum_probs=56.1
Q ss_pred cccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccC
Q psy1056 246 MDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRD 307 (590)
Q Consensus 246 ~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~ 307 (590)
...+|+++|++ +++++++++++.+|+++|.+++++++||+|++|+++|+||..|+++...
T Consensus 5 ~~~~v~~im~~--~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~l~Giit~~di~~~~~ 64 (245)
T 3l2b_A 5 VKLKVEDLEMD--KIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNITATYM 64 (245)
T ss_dssp CCCBGGGSCCB--CCCCBCTTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred ccCcHHHhcCC--CCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHH
Confidence 35789999998 9999999999999999999999999999999999999999999998753
|
| >3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C* | Back alignment and structure |
|---|
Probab=98.48 E-value=1.5e-06 Score=90.23 Aligned_cols=130 Identities=12% Similarity=0.073 Sum_probs=88.1
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCC----------C-----chhhHHHHHHHHHHhCCCceEEecc-cc---------CcH
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQ----------G-----NSIYQIEMIKFIKKEYPDMQVIGGN-VL---------FGY 383 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~----------G-----~~~~~l~~i~~i~~~~~~vpvi~g~-v~---------s~~ 383 (590)
....+.++.+.++|+|.|.++..- | +...+.+.++.+++.. ++||.+|- .+ +.+
T Consensus 70 ~~~~~aA~~a~~~G~D~IeIn~gcP~~~~~~d~~G~~l~~~~~~~~eiv~av~~~v-~~PV~vKiR~g~~~~~~~~~~~~ 148 (350)
T 3b0p_A 70 KSLAEAARIGEAFGYDEINLNLGCPSEKAQEGGYGACLLLDLARVREILKAMGEAV-RVPVTVKMRLGLEGKETYRGLAQ 148 (350)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECCCSHHHHHTTCGGGGGGCHHHHHHHHHHHHHHC-SSCEEEEEESCBTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEECCcCCCCcCcCCCcchhHHhCHHHHHHHHHHHHHHh-CCceEEEEecCcCccccHHHHHH
Confidence 445567778888999999998521 1 2245678888898887 78988852 11 245
Q ss_pred HHHHHHHCCCCEEEEcccccccCCCcccc-----c-cchhHHHHHHHHHhcC-CCcEEecCCCCCHHHHHHHHHcCCCEE
Q psy1056 384 QPRATLLNFIYQIEMIKFIKKEYPDMQVI-----G-RNGTAVYRVAEYASRR-GVPVIADGGVQSVGHVMKALALGASTA 456 (590)
Q Consensus 384 ~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~-----g-~~~~~l~~~~~~~~~~-~v~iia~GGi~~~~di~kalalGA~~v 456 (590)
-++.+.++|+|+|.|+..+... ++.+- . .....+..+.+ .. ++|||+.|||+|+.|+.++++ |||+|
T Consensus 149 ~a~~l~~aG~d~I~V~~r~~~~--g~~g~~~~~~~~~~~~~i~~ik~---~~~~iPVianGgI~s~eda~~~l~-GaD~V 222 (350)
T 3b0p_A 149 SVEAMAEAGVKVFVVHARSALL--ALSTKANREIPPLRHDWVHRLKG---DFPQLTFVTNGGIRSLEEALFHLK-RVDGV 222 (350)
T ss_dssp HHHHHHHTTCCEEEEECSCBC------------CCCCCHHHHHHHHH---HCTTSEEEEESSCCSHHHHHHHHT-TSSEE
T ss_pred HHHHHHHcCCCEEEEecCchhc--ccCcccccCCCcccHHHHHHHHH---hCCCCeEEEECCcCCHHHHHHHHh-CCCEE
Confidence 5788999999999774221100 11110 0 12223333433 34 699999999999999999998 99999
Q ss_pred EECccccCC
Q psy1056 457 MMGSLLAGT 465 (590)
Q Consensus 457 ~~g~~l~~~ 465 (590)
|+|+.+...
T Consensus 223 ~iGRa~l~~ 231 (350)
T 3b0p_A 223 MLGRAVYED 231 (350)
T ss_dssp EECHHHHHC
T ss_pred EECHHHHhC
Confidence 999987544
|
| >2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_G* 3hmj_G* | Back alignment and structure |
|---|
Probab=98.46 E-value=1.5e-07 Score=115.84 Aligned_cols=136 Identities=12% Similarity=0.010 Sum_probs=88.4
Q ss_pred HHHHHHHHcCCcEEEEecCCCch--hhHHHHHHHHHHhCCCceEEecc---ccCcHHHHHHHHCCCCEE-EEcccccccC
Q psy1056 333 NRLKLLSQAGVDVVILDSSQGNS--IYQIEMIKFIKKEYPDMQVIGGN---VLFGYQPRATLLNFIYQI-EMIKFIKKEY 406 (590)
Q Consensus 333 e~~~~li~~gad~i~V~~~~G~~--~~~l~~i~~i~~~~~~vpvi~g~---v~s~~~a~~l~~~Gvd~i-~v~~~~~~~~ 406 (590)
+.++.+++.|+.+-.+..+-|.+ +...+.++.+ ++++|.-- +.....+....++|+|++ .+.++..+.
T Consensus 664 ~~~~~~~~~gv~i~~v~~~ag~p~~~~~~~~i~~l-----G~~vi~~~~~~~~a~~~~~~~~~~g~d~~ii~~~~G~ea- 737 (2051)
T 2uv8_G 664 PLIKELRSKGYPIQFLTIGAGVPSLEVASEYIETL-----GLKYLGLKPGSIDAISQVINIAKAHPNFPIALQWTGGRG- 737 (2051)
T ss_dssp HHHHHHHHTTCSEEEEEEESSCCCHHHHHHHHHHS-----CCSCEEECCCSHHHHHHHHHHHHHSTTSCEEEEECCSSC-
T ss_pred HHHHHHHHcCCCcceEEecCCCCchhhHHHHHHHc-----CCEEEEecCchHHHHHHHHHHHHhCCCceeEEEEEccCc-
Confidence 67788889999983333344543 2223333333 56665423 334455577778899994 334443332
Q ss_pred CCccccc-cchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHH-----------HcCCCEEEECccccCCCCCCCceEe
Q psy1056 407 PDMQVIG-RNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKAL-----------ALGASTAMMGSLLAGTSEAPGEYFF 474 (590)
Q Consensus 407 ~~~~~~g-~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kal-----------alGA~~v~~g~~l~~~~es~~~~~~ 474 (590)
.|..||- .....+..+.+++...++||||+|||.+|.+++.|| +||||+|+||++|+.|.||+.+-.+
T Consensus 738 GGH~g~~d~~~~~l~l~~~v~~~~~ipviaaGGi~dg~~~~aaL~g~w~~~~g~~~lgadGv~~GTrf~~t~Ea~~~~~~ 817 (2051)
T 2uv8_G 738 GGHHSFEDAHTPMLQMYSKIRRHPNIMLIFGSGFGSADDTYPYLTGEWSTKFDYPPMPFDGFLFGSRVMIAKEVKTSPDA 817 (2051)
T ss_dssp SEECCSCCSSHHHHHHHHHHTTCTTBCCEEESSCCSHHHHTHHHHTCGGGTTTCCCCCCSCEECSGGGTTSTTSCCCHHH
T ss_pred CCCCCcccccccHHHHHHHHHhcCCceEEEeCCCCCHHHHHHHHccccccccCccCCCCceeeechHHHhCcccccCHHH
Confidence 1222221 112233334555555689999999999999999999 9999999999999999999987544
|
| >1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A | Back alignment and structure |
|---|
Probab=98.44 E-value=1.3e-07 Score=93.14 Aligned_cols=177 Identities=19% Similarity=0.136 Sum_probs=103.3
Q ss_pred CHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCCCCCCcccCCceEEeEeeccchhHHHHHHHHHHcCCcEEE
Q psy1056 268 SLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVVI 347 (590)
Q Consensus 268 ~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~gad~i~ 347 (590)
...+..+.+.+.+.+.+-|.+.++...|-.+. ++++..... ..-.+.+...+. ..+.++.++++|++.++
T Consensus 33 d~~~~a~~~~~~Gad~i~v~~~d~~~~~~~~~-~~i~~i~~~-----~~ipv~v~ggI~----~~~~~~~~l~~Gad~V~ 102 (244)
T 1vzw_A 33 SPLEAALAWQRSGAEWLHLVDLDAAFGTGDNR-ALIAEVAQA-----MDIKVELSGGIR----DDDTLAAALATGCTRVN 102 (244)
T ss_dssp CHHHHHHHHHHTTCSEEEEEEHHHHHTSCCCH-HHHHHHHHH-----CSSEEEEESSCC----SHHHHHHHHHTTCSEEE
T ss_pred CHHHHHHHHHHcCCCEEEEecCchhhcCCChH-HHHHHHHHh-----cCCcEEEECCcC----CHHHHHHHHHcCCCEEE
Confidence 56677788999999999988765554444444 444443211 112223322222 13457888899999998
Q ss_pred EecCC-CchhhHHHHHHHHHHhCCCceEEeccc-----c---------C-cHHHHHHHHCCCCEEEEcccccccCCCccc
Q psy1056 348 LDSSQ-GNSIYQIEMIKFIKKEYPDMQVIGGNV-----L---------F-GYQPRATLLNFIYQIEMIKFIKKEYPDMQV 411 (590)
Q Consensus 348 V~~~~-G~~~~~l~~i~~i~~~~~~vpvi~g~v-----~---------s-~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~ 411 (590)
+.... .++. .+..+.+.++...++.-++ . + .+.++.+.++|++.|.+. ..++. ..+
T Consensus 103 lg~~~l~~p~----~~~~~~~~~g~~~~~~l~~~~g~v~~~g~~~~~~~~~e~~~~~~~~G~~~i~~~-~~~~~---~~~ 174 (244)
T 1vzw_A 103 LGTAALETPE----WVAKVIAEHGDKIAVGLDVRGTTLRGRGWTRDGGDLYETLDRLNKEGCARYVVT-DIAKD---GTL 174 (244)
T ss_dssp ECHHHHHCHH----HHHHHHHHHGGGEEEEEEEETTEECCSSSCCCCCBHHHHHHHHHHTTCCCEEEE-EC---------
T ss_pred ECchHhhCHH----HHHHHHHHcCCcEEEEEEccCCEEEEcCcccCCCCHHHHHHHHHhCCCCEEEEe-ccCcc---ccc
Confidence 86532 1222 2333333322111111111 1 3 455788999999988442 11122 111
Q ss_pred cccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHc---CCCEEEECccccCC
Q psy1056 412 IGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALAL---GASTAMMGSLLAGT 465 (590)
Q Consensus 412 ~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalal---GA~~v~~g~~l~~~ 465 (590)
.|.....+..+. ...++|||++|||+++.|+.+++++ |||+|++|+.|...
T Consensus 175 ~g~~~~~~~~i~---~~~~ipvia~GGI~~~~d~~~~~~~~~~Gadgv~vG~al~~~ 228 (244)
T 1vzw_A 175 QGPNLELLKNVC---AATDRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGKALYAK 228 (244)
T ss_dssp -CCCHHHHHHHH---HTCSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHHHTT
T ss_pred CCCCHHHHHHHH---HhcCCCEEEECCCCCHHHHHHHHhhccCCCceeeeeHHHHcC
Confidence 222333333333 3447999999999999999999999 99999999988543
|
| >3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=2.7e-06 Score=88.30 Aligned_cols=131 Identities=14% Similarity=0.051 Sum_probs=89.4
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCc------------------------hhhHHHHHHHHHHhCC-CceEEeccc-----
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGN------------------------SIYQIEMIKFIKKEYP-DMQVIGGNV----- 379 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~------------------------~~~~l~~i~~i~~~~~-~vpvi~g~v----- 379 (590)
+..+.++.+.++|.|.|.|+.++|+ .+..++.++.+++..+ +.||.++=-
T Consensus 153 ~f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVR~avG~d~pV~vRls~~~~~ 232 (349)
T 3hgj_A 153 AFVEGARRALRAGFQVIELHMAHGYLLSSFLSPLSNQRTDAYGGSLENRMRFPLQVAQAVREVVPRELPLFVRVSATDWG 232 (349)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHSCTTSCEEEEEESCCCS
T ss_pred HHHHHHHHHHHcCCCEEEECCccchHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHHHHHHHhcCCceEEEEecccccc
Confidence 4455677888999999999976531 1235788899999884 677876422
Q ss_pred ---cCcHH----HHHHHHCCCCEEEEcccccccCCC-ccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHc
Q psy1056 380 ---LFGYQ----PRATLLNFIYQIEMIKFIKKEYPD-MQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALAL 451 (590)
Q Consensus 380 ---~s~~~----a~~l~~~Gvd~i~v~~~~~~~~~~-~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalal 451 (590)
.+.++ ++.|.++|+|+|.++......... ..+-++....+..+++. .++|||+.|||+++.++.++|+.
T Consensus 233 ~~g~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~---~~iPVi~~Ggi~t~e~a~~~l~~ 309 (349)
T 3hgj_A 233 EGGWSLEDTLAFARRLKELGVDLLDCSSGGVVLRVRIPLAPGFQVPFADAVRKR---VGLRTGAVGLITTPEQAETLLQA 309 (349)
T ss_dssp TTSCCHHHHHHHHHHHHHTTCCEEEEECCCSCSSSCCCCCTTTTHHHHHHHHHH---HCCEEEECSSCCCHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEecCCcCcccccCCCccccHHHHHHHHHH---cCceEEEECCCCCHHHHHHHHHC
Confidence 13344 778888999999885322211000 00111222233334433 36999999999999999999999
Q ss_pred C-CCEEEECcccc
Q psy1056 452 G-ASTAMMGSLLA 463 (590)
Q Consensus 452 G-A~~v~~g~~l~ 463 (590)
| ||+|++|++|.
T Consensus 310 G~aD~V~iGR~~l 322 (349)
T 3hgj_A 310 GSADLVLLGRVLL 322 (349)
T ss_dssp TSCSEEEESTHHH
T ss_pred CCceEEEecHHHH
Confidence 9 99999999885
|
| >2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=1.3e-07 Score=93.20 Aligned_cols=178 Identities=17% Similarity=0.109 Sum_probs=103.7
Q ss_pred CHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCCCCCCcccCCceEEeEeeccchhHHHHHHHHHHcCCcEEE
Q psy1056 268 SLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVVI 347 (590)
Q Consensus 268 ~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~gad~i~ 347 (590)
...+..+.+.+.+.+.+-|.+.++...+-.+. +.++..... ..-.+.+...+ . ..+.++.++++|++.++
T Consensus 32 d~~~~a~~~~~~Gad~i~v~~~d~~~~~~~~~-~~i~~i~~~-----~~ipv~v~ggi--~--~~~~~~~~l~~Gad~V~ 101 (244)
T 2y88_A 32 SAVDAALGWQRDGAEWIHLVDLDAAFGRGSNH-ELLAEVVGK-----LDVQVELSGGI--R--DDESLAAALATGCARVN 101 (244)
T ss_dssp EHHHHHHHHHHTTCSEEEEEEHHHHTTSCCCH-HHHHHHHHH-----CSSEEEEESSC--C--SHHHHHHHHHTTCSEEE
T ss_pred CHHHHHHHHHHcCCCEEEEEcCcccccCCChH-HHHHHHHHh-----cCCcEEEECCC--C--CHHHHHHHHHcCCCEEE
Confidence 45667778888999999888755444333333 444433211 11122222222 2 23457888899999998
Q ss_pred EecCC-CchhhHHHHHHHHHHhCCCceEE---ec------cc----------cCcHHHHHHHHCCCCEEEEcccccccCC
Q psy1056 348 LDSSQ-GNSIYQIEMIKFIKKEYPDMQVI---GG------NV----------LFGYQPRATLLNFIYQIEMIKFIKKEYP 407 (590)
Q Consensus 348 V~~~~-G~~~~~l~~i~~i~~~~~~vpvi---~g------~v----------~s~~~a~~l~~~Gvd~i~v~~~~~~~~~ 407 (590)
+.... .++ +.+..+.+.++...++ ++ ++ ...+.++.+.++|++.|.+ +++..+
T Consensus 102 lg~~~l~~p----~~~~~~~~~~g~~~~~~ld~~~~~~~~~v~~~g~~~~~~~~~e~~~~~~~~G~~~i~~---~~~~~~ 174 (244)
T 2y88_A 102 VGTAALENP----QWCARVIGEHGDQVAVGLDVQIIDGEHRLRGRGWETDGGDLWDVLERLDSEGCSRFVV---TDITKD 174 (244)
T ss_dssp ECHHHHHCH----HHHHHHHHHHGGGEEEEEEEEEETTEEEEEEGGGTEEEEEHHHHHHHHHHTTCCCEEE---EETTTT
T ss_pred ECchHhhCh----HHHHHHHHHcCCCEEEEEeccccCCCCEEEECCccCCCCCHHHHHHHHHhCCCCEEEE---EecCCc
Confidence 86532 122 2233333332211111 11 11 1257778999999998843 222211
Q ss_pred CccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHc---CCCEEEECccccCCC
Q psy1056 408 DMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALAL---GASTAMMGSLLAGTS 466 (590)
Q Consensus 408 ~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalal---GA~~v~~g~~l~~~~ 466 (590)
...-|.....+.++ .+..++|||++|||.++.|+.+++.+ ||++|++|+.|....
T Consensus 175 -~~~~g~~~~~~~~l---~~~~~ipvia~GGI~~~~d~~~~~~~~~~Gad~v~vG~al~~~~ 232 (244)
T 2y88_A 175 -GTLGGPNLDLLAGV---ADRTDAPVIASGGVSSLDDLRAIATLTHRGVEGAIVGKALYARR 232 (244)
T ss_dssp -TTTSCCCHHHHHHH---HTTCSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHHHTTS
T ss_pred -cccCCCCHHHHHHH---HHhCCCCEEEECCCCCHHHHHHHHhhccCCCCEEEEcHHHHCCC
Confidence 11112233333333 33457999999999999999999999 999999999886543
|
| >1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=3.2e-06 Score=87.31 Aligned_cols=131 Identities=16% Similarity=0.038 Sum_probs=89.9
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCc------------------------hhhHHHHHHHHHHhCCCceEEeccc------
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGN------------------------SIYQIEMIKFIKKEYPDMQVIGGNV------ 379 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~------------------------~~~~l~~i~~i~~~~~~vpvi~g~v------ 379 (590)
+..+.++.+.++|.|.+.|+.++|+ .+..++.++.+++.. +.||.++=-
T Consensus 145 ~~~~aA~~a~~aGfDgVeih~~~gyLl~qFlsp~~n~R~d~yGGslenr~r~~~eiv~avr~~v-~~pv~vris~~~~~~ 223 (338)
T 1z41_A 145 EFKQAAARAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVW-DGPLFVRVSASDYTD 223 (338)
T ss_dssp HHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHC-CSCEEEEEECCCCST
T ss_pred HHHHHHHHHHHcCCCEEEeccccchHHHHccCCCcCCcCcccCcchhhhHHHHHHHHHHHHHHc-CCcEEEEecCcccCC
Confidence 4456677888999999999976531 133578899999988 788887621
Q ss_pred --cC----cHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcC-
Q psy1056 380 --LF----GYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALG- 452 (590)
Q Consensus 380 --~s----~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalG- 452 (590)
.+ .+-++.|.++|+|+|.|+..+.....-..+-++....+..+++. .++|||+.|||+++.++.++|+.|
T Consensus 224 ~g~~~~~~~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~~~~ir~~---~~iPVi~~Ggi~s~~~a~~~l~~G~ 300 (338)
T 1z41_A 224 KGLDIADHIGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQ---ADMATGAVGMITDGSMAEEILQNGR 300 (338)
T ss_dssp TSCCHHHHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHH---HCCEEEECSSCCSHHHHHHHHHTTS
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecCccccCCCCCCccchHHHHHHHHHH---CCCCEEEECCCCCHHHHHHHHHcCC
Confidence 12 35567888899999987532211100000111122233344433 369999999999999999999999
Q ss_pred CCEEEECccccC
Q psy1056 453 ASTAMMGSLLAG 464 (590)
Q Consensus 453 A~~v~~g~~l~~ 464 (590)
||+|++|++|..
T Consensus 301 aD~V~iGR~~i~ 312 (338)
T 1z41_A 301 ADLIFIGRELLR 312 (338)
T ss_dssp CSEEEECHHHHH
T ss_pred ceEEeecHHHHh
Confidence 999999998853
|
| >1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=98.40 E-value=1.4e-06 Score=85.97 Aligned_cols=137 Identities=19% Similarity=0.237 Sum_probs=93.5
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCc--h-hhHHHHHHHHHHhCCCceEEe-ccccCcHHHHHHHHCCCCEEEE------
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQGN--S-IYQIEMIKFIKKEYPDMQVIG-GNVLFGYQPRATLLNFIYQIEM------ 398 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G~--~-~~~l~~i~~i~~~~~~vpvi~-g~v~s~~~a~~l~~~Gvd~i~v------ 398 (590)
.+..+.++.+.++|++.+++...... . ....+.++.+++.+ ++|+++ |.+.+.++++.+.++|+|++.+
T Consensus 31 ~d~~~~a~~~~~~Gad~i~v~d~~~~~~~~~~~~~~i~~i~~~~-~iPvi~~Ggi~~~~~~~~~~~~Gad~V~lg~~~l~ 109 (252)
T 1ka9_F 31 GDPVEAARAYDEAGADELVFLDISATHEERAILLDVVARVAERV-FIPLTVGGGVRSLEDARKLLLSGADKVSVNSAAVR 109 (252)
T ss_dssp TCHHHHHHHHHHHTCSCEEEEECCSSTTCHHHHHHHHHHHHTTC-CSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHHH
T ss_pred CCHHHHHHHHHHcCCCEEEEEcCCccccCccccHHHHHHHHHhC-CCCEEEECCcCCHHHHHHHHHcCCCEEEEChHHHh
Confidence 35677888999999998887543322 2 22357788888876 799996 6777899999999999999987
Q ss_pred ----------c-----c--ccccc---------------------CC--------Cc-----ccc---cc-chhHHHHHH
Q psy1056 399 ----------I-----K--FIKKE---------------------YP--------DM-----QVI---GR-NGTAVYRVA 423 (590)
Q Consensus 399 ----------~-----~--~~~~~---------------------~~--------~~-----~~~---g~-~~~~l~~~~ 423 (590)
. + ..... .. |. ++. |. +...+..+.
T Consensus 110 ~p~~~~~~~~~~~~~~i~~~~~~~~~~g~~~v~~~g~~~~~~~~~~e~~~~~~~~G~~~i~~~~~~~~g~~~g~~~~~i~ 189 (252)
T 1ka9_F 110 RPELIRELADHFGAQAVVLAIDARWRGDFPEVHVAGGRVPTGLHAVEWAVKGVELGAGEILLTSMDRDGTKEGYDLRLTR 189 (252)
T ss_dssp CTHHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHHTCCEEEEEETTTTTTCSCCCHHHHH
T ss_pred CcHHHHHHHHHcCCCcEEEEEEEecCCCCEEEEECCCccccCCcHHHHHHHHHHcCCCEEEEecccCCCCcCCCCHHHHH
Confidence 0 0 00000 00 00 000 11 000123334
Q ss_pred HHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCCC
Q psy1056 424 EYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTS 466 (590)
Q Consensus 424 ~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~~ 466 (590)
+.....++|+|++|||+++.|+.+++..|||+|++|+.|....
T Consensus 190 ~l~~~~~ipvia~GGI~~~~d~~~~~~~Gadgv~vgsal~~~~ 232 (252)
T 1ka9_F 190 MVAEAVGVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHFGE 232 (252)
T ss_dssp HHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTS
T ss_pred HHHHHcCCCEEEeCCCCCHHHHHHHHHCCCHHHHHHHHHHcCC
Confidence 4444457999999999999999999999999999999996443
|
| >1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A | Back alignment and structure |
|---|
Probab=98.40 E-value=3.2e-06 Score=83.51 Aligned_cols=134 Identities=18% Similarity=0.223 Sum_probs=92.5
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCch---hhHHHHHHHHHHhCCCceEEe-ccccCcHHHHHHHHCCCCEEEE-------
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNS---IYQIEMIKFIKKEYPDMQVIG-GNVLFGYQPRATLLNFIYQIEM------- 398 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~---~~~l~~i~~i~~~~~~vpvi~-g~v~s~~~a~~l~~~Gvd~i~v------- 398 (590)
+..+.++.+.++|++.+++....+.. ....+.++.+++.. ++|+++ |.+.++++++.+.++|||++.+
T Consensus 31 d~~~~a~~~~~~Gad~i~v~d~~~~~~~~~~~~~~i~~i~~~~-~ipvi~~ggI~~~~~~~~~~~~Gad~V~lg~~~l~~ 109 (253)
T 1thf_D 31 DPVELGKFYSEIGIDELVFLDITASVEKRKTMLELVEKVAEQI-DIPFTVGGGIHDFETASELILRGADKVSINTAAVEN 109 (253)
T ss_dssp CHHHHHHHHHHTTCCEEEEEESSCSSSHHHHHHHHHHHHHTTC-CSCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHHC
T ss_pred CHHHHHHHHHHcCCCEEEEECCchhhcCCcccHHHHHHHHHhC-CCCEEEeCCCCCHHHHHHHHHcCCCEEEEChHHHhC
Confidence 55677888999999999987655432 22357778888776 789886 4667899999999999999977
Q ss_pred ---------c-----c--ccc-c-------------------cC-C--------Ccccc--------cc-chhHHHHHHH
Q psy1056 399 ---------I-----K--FIK-K-------------------EY-P--------DMQVI--------GR-NGTAVYRVAE 424 (590)
Q Consensus 399 ---------~-----~--~~~-~-------------------~~-~--------~~~~~--------g~-~~~~l~~~~~ 424 (590)
. + ... + .. . |.... |. +...+..+.+
T Consensus 110 p~~~~~~~~~~g~~~i~~~~~~~~~~g~~~v~~~g~~~~~~~~~~e~~~~~~~~G~~~i~~~~~~~~g~~~g~~~~~~~~ 189 (253)
T 1thf_D 110 PSLITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRF 189 (253)
T ss_dssp THHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHTTCSEEEEEETTTTTSCSCCCHHHHHH
T ss_pred hHHHHHHHHHcCCCcEEEEEEEEccCCcEEEEECCCccccCCCHHHHHHHHHHCCCCEEEEEeccCCCCCCCCCHHHHHH
Confidence 0 0 000 0 00 0 00000 10 0001233444
Q ss_pred HHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccC
Q psy1056 425 YASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAG 464 (590)
Q Consensus 425 ~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~ 464 (590)
.....++|+|++|||+++.|+.+++..|||+|++|+.|..
T Consensus 190 l~~~~~ipvia~GGI~~~~d~~~~~~~Gadgv~vGsal~~ 229 (253)
T 1thf_D 190 VRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHF 229 (253)
T ss_dssp HGGGCCSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHT
T ss_pred HHHhcCCCEEEECCCCCHHHHHHHHHcCChHHHHHHHHHc
Confidence 4444579999999999999999999999999999998853
|
| >3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=5.4e-06 Score=85.59 Aligned_cols=130 Identities=15% Similarity=0.087 Sum_probs=88.9
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCC--------------------c----hhhHHHHHHHHHHhCCCceEEecccc-----
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQG--------------------N----SIYQIEMIKFIKKEYPDMQVIGGNVL----- 380 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G--------------------~----~~~~l~~i~~i~~~~~~vpvi~g~v~----- 380 (590)
+..+.+..+.++|.|.|.|+.++| . .+..++.++.+++.. +.||.++=-.
T Consensus 145 ~f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~avr~~v-~~pv~vRls~~~~~~ 223 (340)
T 3gr7_A 145 AFQNGARRAKEAGFDVIEIHAAHGYLINEFLSPLSNRRQDEYGGSPENRYRFLGEVIDAVREVW-DGPLFVRISASDYHP 223 (340)
T ss_dssp HHHHHHHHHHHHTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHC-CSCEEEEEESCCCST
T ss_pred HHHHHHHHHHHcCCCEEEEccccchHHHHcCCCccCcCCCcccCCHHHHHHHHHHHHHHHHHhc-CCceEEEeccccccC
Confidence 344567778889999999996542 1 133578889999988 7888764221
Q ss_pred -------CcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcC-
Q psy1056 381 -------FGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALG- 452 (590)
Q Consensus 381 -------s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalG- 452 (590)
..+-++.|.++|+|+|.|+...........+-++....+..+++ ..++|||+.|||+++.++.++|..|
T Consensus 224 ~g~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~---~~~iPVi~~GgI~s~e~a~~~L~~G~ 300 (340)
T 3gr7_A 224 DGLTAKDYVPYAKRMKEQGVDLVDVSSGAIVPARMNVYPGYQVPFAELIRR---EADIPTGAVGLITSGWQAEEILQNGR 300 (340)
T ss_dssp TSCCGGGHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHH---HTTCCEEEESSCCCHHHHHHHHHTTS
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecCCccCCCCCCCccccHHHHHHHHH---HcCCcEEeeCCCCCHHHHHHHHHCCC
Confidence 23557788889999998753221110000111222222333333 3469999999999999999999999
Q ss_pred CCEEEECcccc
Q psy1056 453 ASTAMMGSLLA 463 (590)
Q Consensus 453 A~~v~~g~~l~ 463 (590)
||+|++|+++.
T Consensus 301 aD~V~iGR~~l 311 (340)
T 3gr7_A 301 ADLVFLGRELL 311 (340)
T ss_dssp CSEEEECHHHH
T ss_pred eeEEEecHHHH
Confidence 99999999885
|
| >1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=98.36 E-value=2.2e-06 Score=84.72 Aligned_cols=176 Identities=10% Similarity=0.071 Sum_probs=111.4
Q ss_pred CCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCCCCCCcccCCceEEeEeeccchhHHHHHHHHHHcCCcEE
Q psy1056 267 ISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVV 346 (590)
Q Consensus 267 ~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~gad~i 346 (590)
....+..+.+.+.+...+=|+++++.+-|-...-..++.. ... .++..--+ . + ...+....+.|+|.+
T Consensus 65 ~~p~~~A~~~~~~GA~~isvlt~~~~f~G~~~~l~~i~~~-v~l-------Pvl~kdfI--~-d-~~qi~~a~~~GAD~V 132 (254)
T 1vc4_A 65 VDPVEAALAYARGGARAVSVLTEPHRFGGSLLDLKRVREA-VDL-------PLLRKDFV--V-D-PFMLEEARAFGASAA 132 (254)
T ss_dssp CCHHHHHHHHHHTTCSEEEEECCCSSSCCCHHHHHHHHHH-CCS-------CEEEESCC--C-S-HHHHHHHHHTTCSEE
T ss_pred CCHHHHHHHHHHcCCCEEEEecchhhhccCHHHHHHHHHh-cCC-------CEEECCcC--C-C-HHHHHHHHHcCCCEE
Confidence 5678888899999999999998877766643322222211 011 11111111 1 1 224566888999999
Q ss_pred EEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHH
Q psy1056 347 ILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYA 426 (590)
Q Consensus 347 ~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~ 426 (590)
++...--. ..+.+.+...+.. ++.+++ ++.+.+++.++.++|+|+|-+. .+. +++.+.......++.+..
T Consensus 133 lL~~~~l~-~~l~~l~~~a~~l--Gl~~lv-ev~~~~E~~~a~~~gad~IGvn---~~~---l~~~~~dl~~~~~L~~~i 202 (254)
T 1vc4_A 133 LLIVALLG-ELTGAYLEEARRL--GLEALV-EVHTERELEIALEAGAEVLGIN---NRD---LATLHINLETAPRLGRLA 202 (254)
T ss_dssp EEEHHHHG-GGHHHHHHHHHHH--TCEEEE-EECSHHHHHHHHHHTCSEEEEE---SBC---TTTCCBCTTHHHHHHHHH
T ss_pred EECccchH-HHHHHHHHHHHHC--CCeEEE-EECCHHHHHHHHHcCCCEEEEc---ccc---CcCCCCCHHHHHHHHHhC
Confidence 98654222 2333444443343 555554 7888999999999999998442 222 223333333344444444
Q ss_pred hcC--CCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCC
Q psy1056 427 SRR--GVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGT 465 (590)
Q Consensus 427 ~~~--~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~ 465 (590)
... ++|+|++|||.|+.|+.+... ||++|.+|+.|...
T Consensus 203 ~~~~~~~~vIAegGI~s~~dv~~l~~-Ga~gvlVGsAl~~~ 242 (254)
T 1vc4_A 203 RKRGFGGVLVAESGYSRKEELKALEG-LFDAVLIGTSLMRA 242 (254)
T ss_dssp HHTTCCSEEEEESCCCSHHHHHTTTT-TCSEEEECHHHHTS
T ss_pred ccccCCCeEEEEcCCCCHHHHHHHHc-CCCEEEEeHHHcCC
Confidence 321 589999999999999999999 99999999998644
|
| >1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=6.9e-06 Score=79.03 Aligned_cols=108 Identities=21% Similarity=0.202 Sum_probs=87.7
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCC
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPD 408 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~ 408 (590)
.+..+.++.+++.|++.+.+.... ....+.++.+++.+|+..+.+|.+.+.++++.++++|+|++ +....
T Consensus 28 ~~~~~~~~al~~gGv~~iel~~k~---~~~~~~i~~l~~~~~~~~vgagtvi~~d~~~~A~~aGAd~v----~~p~~--- 97 (214)
T 1wbh_A 28 EHAVPMAKALVAGGVRVLNVTLRT---ECAVDAIRAIAKEVPEAIVGAGTVLNPQQLAEVTEAGAQFA----ISPGL--- 97 (214)
T ss_dssp GGHHHHHHHHHHTTCCEEEEESCS---TTHHHHHHHHHHHCTTSEEEEESCCSHHHHHHHHHHTCSCE----EESSC---
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCC---hhHHHHHHHHHHHCcCCEEeeCEEEEHHHHHHHHHcCCCEE----EcCCC---
Confidence 356788999999999999997543 23467888899999888888999999999999999999999 22211
Q ss_pred ccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEE
Q psy1056 409 MQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMM 458 (590)
Q Consensus 409 ~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~ 458 (590)
. .++.+.+...++|+|. |+.|+.++.+|+.+|||+|.+
T Consensus 98 ------d----~~v~~~~~~~g~~~i~--G~~t~~e~~~A~~~Gad~v~~ 135 (214)
T 1wbh_A 98 ------T----EPLLKAATEGTIPLIP--GISTVSELMLGMDYGLKEFKF 135 (214)
T ss_dssp ------C----HHHHHHHHHSSSCEEE--EESSHHHHHHHHHTTCCEEEE
T ss_pred ------C----HHHHHHHHHhCCCEEE--ecCCHHHHHHHHHCCCCEEEE
Confidence 1 2455556667899998 699999999999999999977
|
| >1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=98.34 E-value=4.6e-06 Score=80.78 Aligned_cols=108 Identities=17% Similarity=0.194 Sum_probs=86.6
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCC
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPD 408 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~ 408 (590)
++..+.++.+++.|++.+.+..... ...+.++.+++.+|++.+.+|.+.+.++++.++++|+|++ ++.. .
T Consensus 29 ~~~~~~~~al~~gGv~~iel~~k~~---~~~~~i~~l~~~~~~l~vgaGtvl~~d~~~~A~~aGAd~v-~~p~---~--- 98 (224)
T 1vhc_A 29 DDILPLADTLAKNGLSVAEITFRSE---AAADAIRLLRANRPDFLIAAGTVLTAEQVVLAKSSGADFV-VTPG---L--- 98 (224)
T ss_dssp GGHHHHHHHHHHTTCCEEEEETTST---THHHHHHHHHHHCTTCEEEEESCCSHHHHHHHHHHTCSEE-ECSS---C---
T ss_pred HHHHHHHHHHHHcCCCEEEEeccCc---hHHHHHHHHHHhCcCcEEeeCcEeeHHHHHHHHHCCCCEE-EECC---C---
Confidence 3567889999999999999975432 3467889899999988888999999999999999999999 2211 1
Q ss_pred ccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEE
Q psy1056 409 MQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMM 458 (590)
Q Consensus 409 ~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~ 458 (590)
. .++.+.+.+.+.|+|. |+.|+.++.+|+.+|||+|.+
T Consensus 99 ------d----~~v~~~ar~~g~~~i~--Gv~t~~e~~~A~~~Gad~vk~ 136 (224)
T 1vhc_A 99 ------N----PKIVKLCQDLNFPITP--GVNNPMAIEIALEMGISAVKF 136 (224)
T ss_dssp ------C----HHHHHHHHHTTCCEEC--EECSHHHHHHHHHTTCCEEEE
T ss_pred ------C----HHHHHHHHHhCCCEEe--ccCCHHHHHHHHHCCCCEEEE
Confidence 1 2334444456789888 699999999999999999977
|
| >1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=98.32 E-value=2.7e-06 Score=83.59 Aligned_cols=134 Identities=19% Similarity=0.191 Sum_probs=91.0
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCc---hhhHHHHHHHHHHhCCCceEEe-ccccCcHHHHHHHHCCCCEEEE------
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQGN---SIYQIEMIKFIKKEYPDMQVIG-GNVLFGYQPRATLLNFIYQIEM------ 398 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G~---~~~~l~~i~~i~~~~~~vpvi~-g~v~s~~~a~~l~~~Gvd~i~v------ 398 (590)
.+..+.++.+.+.|++.+++....+. .....+.++.+++.+ ++|+++ +.+.++++++.+.++|+|+|.+
T Consensus 33 ~~~~~~a~~~~~~G~d~i~v~~~~~~~~~~~~~~~~i~~i~~~~-~ipvi~~g~i~~~~~~~~~~~~Gad~V~i~~~~~~ 111 (253)
T 1h5y_A 33 GDPVEMAVRYEEEGADEIAILDITAAPEGRATFIDSVKRVAEAV-SIPVLVGGGVRSLEDATTLFRAGADKVSVNTAAVR 111 (253)
T ss_dssp ECHHHHHHHHHHTTCSCEEEEECCCCTTTHHHHHHHHHHHHHHC-SSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHH
T ss_pred ccHHHHHHHHHHcCCCEEEEEeCCccccCCcccHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCCCEEEEChHHhh
Confidence 35677888999999998888654332 223467888898887 788885 5677999999999999999987
Q ss_pred ------cccccc----c-------------------------CC-----------Ccccc--------cc-chhHHHHHH
Q psy1056 399 ------IKFIKK----E-------------------------YP-----------DMQVI--------GR-NGTAVYRVA 423 (590)
Q Consensus 399 ------~~~~~~----~-------------------------~~-----------~~~~~--------g~-~~~~l~~~~ 423 (590)
..+... . .+ |.... |. +...+..++
T Consensus 112 ~~~~~~~~~~~~g~~~i~~~~~~~~~~g~~~v~~~~~~~~~~~~~~e~~~~~~~~G~d~i~~~~~~~~g~~~~~~~~~i~ 191 (253)
T 1h5y_A 112 NPQLVALLAREFGSQSTVVAIDAKWNGEYYEVYVKGGREATGLDAVKWAKEVEELGAGEILLTSIDRDGTGLGYDVELIR 191 (253)
T ss_dssp CTHHHHHHHHHHCGGGEEEEEEEEECSSSEEEEETTTTEEEEEEHHHHHHHHHHHTCSEEEEEETTTTTTCSCCCHHHHH
T ss_pred CcHHHHHHHHHcCCCcEEEEEEeecCCCcEEEEEeCCeecCCCCHHHHHHHHHhCCCCEEEEecccCCCCcCcCCHHHHH
Confidence 000000 0 00 00000 00 000111223
Q ss_pred HHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 424 EYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 424 ~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
+.....++|++++|||.++.|+.+++..||++|++|+.|.
T Consensus 192 ~l~~~~~~pvia~GGi~~~~~~~~~~~~Ga~~v~vgsal~ 231 (253)
T 1h5y_A 192 RVADSVRIPVIASGGAGRVEHFYEAAAAGADAVLAASLFH 231 (253)
T ss_dssp HHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHH
T ss_pred HHHHhcCCCEEEeCCCCCHHHHHHHHHcCCcHHHHHHHHH
Confidence 3333346999999999999999999999999999999884
|
| >3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=4.1e-06 Score=87.36 Aligned_cols=131 Identities=12% Similarity=0.036 Sum_probs=88.2
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCch------------------------hhHHHHHHHHHHhCC-CceEEeccc-----
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNS------------------------IYQIEMIKFIKKEYP-DMQVIGGNV----- 379 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~------------------------~~~l~~i~~i~~~~~-~vpvi~g~v----- 379 (590)
+..+.+..+.++|.|.|.|+.++|+. ++.++.++.+++..+ +.||.++=-
T Consensus 159 ~f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~d~pV~vRis~~~~~ 238 (363)
T 3l5l_A 159 DFVDAARRARDAGFEWIELHFAHGYLGQSFFSEHSNKRTDAYGGSFDNRSRFLLETLAAVREVWPENLPLTARFGVLEYD 238 (363)
T ss_dssp HHHHHHHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHTTSCTTSCEEEEEEEECSS
T ss_pred HHHHHHHHHHHcCCCEEEEccccchHHHHccCCCcCCCCcccCcCHHHHHHHHHHHHHHHHHHcCCCceEEEEecchhcC
Confidence 44456777888999999999754211 235688889998874 567775321
Q ss_pred ----cC----cHHHHHHHHCCCCEEEEcccccccCCC-ccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHH
Q psy1056 380 ----LF----GYQPRATLLNFIYQIEMIKFIKKEYPD-MQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALA 450 (590)
Q Consensus 380 ----~s----~~~a~~l~~~Gvd~i~v~~~~~~~~~~-~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kala 450 (590)
.+ .+-++.|.++|+|+|.++......... ..+-++....+..+++. .++|||+.|||+++.++.++|+
T Consensus 239 ~~G~~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~---~~iPVi~~GgI~s~e~a~~~l~ 315 (363)
T 3l5l_A 239 GRDEQTLEESIELARRFKAGGLDLLSVSVGFTIPDTNIPWGPAFMGPIAERVRRE---AKLPVTSAWGFGTPQLAEAALQ 315 (363)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCEEEEEECCCSSCCCCCCCTTTTHHHHHHHHHH---HTCCEEECSSTTSHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEEecCccccccccCCCcchhHHHHHHHHHH---cCCcEEEeCCCCCHHHHHHHHH
Confidence 12 334778888999999885432211000 00111222223344443 3699999999999999999999
Q ss_pred cC-CCEEEECcccc
Q psy1056 451 LG-ASTAMMGSLLA 463 (590)
Q Consensus 451 lG-A~~v~~g~~l~ 463 (590)
.| ||+|++|++|.
T Consensus 316 ~G~aD~V~iGR~~l 329 (363)
T 3l5l_A 316 ANQLDLVSVGRAHL 329 (363)
T ss_dssp TTSCSEEECCHHHH
T ss_pred CCCccEEEecHHHH
Confidence 99 99999999885
|
| >1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=98.31 E-value=9.5e-06 Score=78.77 Aligned_cols=120 Identities=15% Similarity=0.102 Sum_probs=81.7
Q ss_pred HHHHHHHHcCCcEEEEecC-----CCchhhHHHHHHHHHHhCCCceEEeccc-----cCc----HHHHHHHHCCCCEEEE
Q psy1056 333 NRLKLLSQAGVDVVILDSS-----QGNSIYQIEMIKFIKKEYPDMQVIGGNV-----LFG----YQPRATLLNFIYQIEM 398 (590)
Q Consensus 333 e~~~~li~~gad~i~V~~~-----~G~~~~~l~~i~~i~~~~~~vpvi~g~v-----~s~----~~a~~l~~~Gvd~i~v 398 (590)
..++..++.|++.+-+... .|+...+.+.++.+++..+ |+++|-+ .+. +.++.+.++|+|+|..
T Consensus 74 ~~~~~A~~~Gad~Id~viN~g~~~~~~~~~~~~~i~~v~~a~~--pv~vKvi~e~~~l~~~~~~~~a~~a~eaGad~I~t 151 (225)
T 1mzh_A 74 KEAVEAVRDGAQELDIVWNLSAFKSEKYDFVVEELKEIFRETP--SAVHKVIVETPYLNEEEIKKAVEICIEAGADFIKT 151 (225)
T ss_dssp HHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHTCT--TSEEEEECCGGGCCHHHHHHHHHHHHHHTCSEEEC
T ss_pred HHHHHHHHcCCCEEEEEecHHHHhcCChHHHHHHHHHHHHHhc--CceEEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEE
Confidence 3456777899999875332 2444556677888988874 5454442 243 3467788899999922
Q ss_pred cccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 399 IKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 399 ~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
+ .. +...|.+...+..+.+... .++||+++|||+|+.|+.+.+.+|||.+.+++.+
T Consensus 152 s----tg---~~~gga~~~~i~~v~~~v~-~~ipVia~GGI~t~~da~~~l~aGA~~iG~s~~~ 207 (225)
T 1mzh_A 152 S----TG---FAPRGTTLEEVRLIKSSAK-GRIKVKASGGIRDLETAISMIEAGADRIGTSSGI 207 (225)
T ss_dssp C----CS---CSSSCCCHHHHHHHHHHHT-TSSEEEEESSCCSHHHHHHHHHTTCSEEEESCHH
T ss_pred C----CC---CCCCCCCHHHHHHHHHHhC-CCCcEEEECCCCCHHHHHHHHHhCchHHHHccHH
Confidence 1 11 2112336666666666542 2599999999999999999999999988766544
|
| >1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ... | Back alignment and structure |
|---|
Probab=98.30 E-value=5.4e-06 Score=82.75 Aligned_cols=134 Identities=16% Similarity=0.134 Sum_probs=87.8
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCch---------------------hhHHHHHHHHHHhCCCceEEe---ccc----cC
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNS---------------------IYQIEMIKFIKKEYPDMQVIG---GNV----LF 381 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~---------------------~~~l~~i~~i~~~~~~vpvi~---g~v----~s 381 (590)
...+.++.+.++|+|.++++.+..++ ....+.++.+++.++++|+++ -+. +.
T Consensus 32 ~~~~~~~~l~~~GaD~ieig~P~sdp~~DG~~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pv~lm~y~n~v~~~g~ 111 (268)
T 1qop_A 32 QSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIPIGLLMYANLVFNNGI 111 (268)
T ss_dssp HHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSSSCEEEEECHHHHHTTCH
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCccCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEcccHHHHhhH
Confidence 45677889999999999998744321 223477899998855788764 221 12
Q ss_pred cHHHHHHHHCCCCEEEE---ccc-----------------------cccc--------CCC------ccc-ccc-ch---
Q psy1056 382 GYQPRATLLNFIYQIEM---IKF-----------------------IKKE--------YPD------MQV-IGR-NG--- 416 (590)
Q Consensus 382 ~~~a~~l~~~Gvd~i~v---~~~-----------------------~~~~--------~~~------~~~-~g~-~~--- 416 (590)
.+.++.+.++|+|++.+ ..+ +... ..+ ..| .|. +.
T Consensus 112 ~~~~~~~~~aGadgii~~d~~~e~~~~~~~~~~~~g~~~i~l~~p~t~~~~i~~i~~~~~g~v~~~s~~G~tG~~~~~~~ 191 (268)
T 1qop_A 112 DAFYARCEQVGVDSVLVADVPVEESAPFRQAALRHNIAPIFICPPNADDDLLRQVASYGRGYTYLLSRSGVTGAENRGAL 191 (268)
T ss_dssp HHHHHHHHHHTCCEEEETTCCGGGCHHHHHHHHHTTCEEECEECTTCCHHHHHHHHHHCCSCEEEESSSSCCCSSSCC--
T ss_pred HHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhhCCCcEEEEecCCcCCCccCCCc
Confidence 56778899999998876 000 0000 000 011 122 11
Q ss_pred hHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 417 TAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 417 ~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
.....+++..+..++||+++|||+|+.++.+++..|||+|++|+.+.
T Consensus 192 ~~~~~i~~lr~~~~~pi~vggGI~t~e~~~~~~~agAD~vVVGSai~ 238 (268)
T 1qop_A 192 PLHHLIEKLKEYHAAPALQGFGISSPEQVSAAVRAGAAGAISGSAIV 238 (268)
T ss_dssp CCHHHHHHHHHTTCCCEEEESSCCSHHHHHHHHHTTCSEEEECHHHH
T ss_pred hHHHHHHHHHhccCCcEEEECCCCCHHHHHHHHHcCCCEEEEChHHh
Confidence 11222333333346999999999999999999999999999999884
|
| >3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A | Back alignment and structure |
|---|
Probab=98.30 E-value=2.3e-07 Score=90.55 Aligned_cols=128 Identities=15% Similarity=0.121 Sum_probs=79.1
Q ss_pred HHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHH-hCCCceEEeccccCcHHHHHHHHCCCCEEEEccc--cc-----
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKK-EYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKF--IK----- 403 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~-~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~--~~----- 403 (590)
...++.+...|+|+| |-++..+. .+.+..+.+ .| ++|+++ ++.+.++|.+.++.|++.|....+ ++
T Consensus 80 ~~EAqilea~GaD~I--Desevltp--ad~~~~I~k~~f-~vpfv~-~~~~l~EAlrri~eGA~mIrTtge~gtg~v~~a 153 (291)
T 3o07_A 80 FVEAQIIEALEVDYI--DESEVLTP--ADWTHHIEKDKF-KVPFVC-GAKDLGEALRRINEGAAMIRTKGEAGTGDVSEA 153 (291)
T ss_dssp HHHHHHHHHTTCSEE--EEETTSCC--SCSSCCCCGGGC-SSCEEE-EESSHHHHHHHHHHTCSEEEECCCTTSCCTHHH
T ss_pred HHHHHHHHHcCCCEE--ecccCCCH--HHHHHHhhhhcC-CCcEEe-eCCCHHHHHHHHHCCCCEEEecCcCCCccHHHH
Confidence 456777888999988 55443220 112222233 34 788877 899999999999999999943211 00
Q ss_pred -----------ccCCCc-ccc-ccch----h-HHHHHHHHHhcCCCcE--EecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 404 -----------KEYPDM-QVI-GRNG----T-AVYRVAEYASRRGVPV--IADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 404 -----------~~~~~~-~~~-g~~~----~-~l~~~~~~~~~~~v~i--ia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
+...++ +.- .++. . ....+.+.....++|| |+.|||.|+.|+.+++.+|||+||+|+.+.
T Consensus 154 v~h~r~~~~~i~~l~g~~t~~el~~~a~~~~ad~elI~~Ike~~~IPVV~IAnGGI~TpedA~~~le~GaDGVmVGrAI~ 233 (291)
T 3o07_A 154 VKHIRRITEEIKACQQLKSEDDIAKVAEEMRVPVSLLKDVLEKGKLPVVNFAAGGVATPADAALLMQLGCDGVFVGSGIF 233 (291)
T ss_dssp HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHHTSCSSCEEBCSSCCSHHHHHHHHHTTCSCEEECGGGG
T ss_pred HHHHHHHHHHHHHHHcCCCHHHhhhcccccCCCHHHHHHHHHccCCCEEEecCCCCCCHHHHHHHHHhCCCEEEEchHHh
Confidence 000001 000 0000 0 0112233333346888 579999999999999999999999999886
Q ss_pred CC
Q psy1056 464 GT 465 (590)
Q Consensus 464 ~~ 465 (590)
.+
T Consensus 234 ~s 235 (291)
T 3o07_A 234 KS 235 (291)
T ss_dssp GS
T ss_pred CC
Confidence 53
|
| >3tjx_A Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh, oxidored mutation H174A; HET: FMN; 1.64A {Leishmania major} PDB: 3gz3_A* 3gye_A* 3tro_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=2e-06 Score=89.43 Aligned_cols=66 Identities=21% Similarity=0.245 Sum_probs=56.9
Q ss_pred CCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhcc
Q psy1056 430 GVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNE 509 (590)
Q Consensus 430 ~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~ 509 (590)
++|||+.|||.|+.|+.+.+.+|||+||+|+.|. |+|
T Consensus 277 ~~pIIg~GGI~s~~Da~e~i~aGAs~Vqv~Ta~~-------------------y~G------------------------ 313 (354)
T 3tjx_A 277 GKLIFGCGGVYTGEDAFLHVLAGASMVQVGTALQ-------------------EEG------------------------ 313 (354)
T ss_dssp TSEEEEESSCCSHHHHHHHHHHTEEEEEECHHHH-------------------HHC------------------------
T ss_pred CCcEEEeCCcCCHHHHHHHHHcCCCEEEEChhhh-------------------hcC------------------------
Confidence 5899999999999999999999999999999772 122
Q ss_pred ccceeecccceeEEeeCCchhchHHHHHhhhhhhCcccCcCcHHHHHHh
Q psy1056 510 MDKLKVAQGVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRAM 558 (590)
Q Consensus 510 ~~~~~~~eg~~~~~~~~~~~~~~~~~~~~~l~~~m~~~G~~~i~~l~~~ 558 (590)
-.++.++..+|+..|.--|.++|+|++.+
T Consensus 314 --------------------P~~~~~I~~~L~~~L~~~G~~si~e~~G~ 342 (354)
T 3tjx_A 314 --------------------PSIFERLTSELLGVMAKKRYQTLDEFRGK 342 (354)
T ss_dssp --------------------TTHHHHHHHHHHHHHHHHTCCSGGGTTTC
T ss_pred --------------------chHHHHHHHHHHHHHHHcCCCCHHHHhCh
Confidence 02377888999999999999999999876
|
| >3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=98.28 E-value=5e-06 Score=82.72 Aligned_cols=135 Identities=17% Similarity=0.135 Sum_probs=88.4
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCC--------------------Cch-hhHHHHHHHHHHhCCCceEEec---cc----c
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQ--------------------GNS-IYQIEMIKFIKKEYPDMQVIGG---NV----L 380 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~--------------------G~~-~~~l~~i~~i~~~~~~vpvi~g---~v----~ 380 (590)
+...+.+..|.++|+|++.+..+. |.+ ..+++.++.+|+.++++|+++= |. +
T Consensus 34 ~~~~~~~~~l~~~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~v~~~r~~~~~~Pivlm~Y~n~v~~~g 113 (271)
T 3nav_A 34 EQSLAIMQTLIDAGADALELGMPFSDPLADGPTIQGANLRALAAKTTPDICFELIAQIRARNPETPIGLLMYANLVYARG 113 (271)
T ss_dssp HHHHHHHHHHHHTTCSSEEEECCCCCGGGCCSHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEEECHHHHHHTC
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHh
Confidence 345678999999999999997543 211 2456788999988668888742 21 2
Q ss_pred CcHHHHHHHHCCCCEEEE--------------------------ccccccc--C------CCcc------c-ccc-c--h
Q psy1056 381 FGYQPRATLLNFIYQIEM--------------------------IKFIKKE--Y------PDMQ------V-IGR-N--G 416 (590)
Q Consensus 381 s~~~a~~l~~~Gvd~i~v--------------------------~~~~~~~--~------~~~~------~-~g~-~--~ 416 (590)
...-++.+.++|+|++.+ +..++.. + .+|- | .|. + .
T Consensus 114 ~~~f~~~~~~aGvdGvIipDlp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~~~gfiY~vs~~GvTG~~~~~~ 193 (271)
T 3nav_A 114 IDDFYQRCQKAGVDSVLIADVPTNESQPFVAAAEKFGIQPIFIAPPTASDETLRAVAQLGKGYTYLLSRAGVTGAETKAN 193 (271)
T ss_dssp HHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHHHHTTCEEEEEECTTCCHHHHHHHHHHCCSCEEECCCC--------CC
T ss_pred HHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHHCCCeEEEEeccCCCCcccCCc
Confidence 345588899999999877 1111000 0 0111 1 122 1 1
Q ss_pred hHHHHH-HHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 417 TAVYRV-AEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 417 ~~l~~~-~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
..+.+. .+..+..++|++..|||+++.++.++++.|||+|.+|+.|.
T Consensus 194 ~~~~~~v~~vr~~~~~Pv~vGfGIst~e~~~~~~~~gADgvIVGSAiv 241 (271)
T 3nav_A 194 MPVHALLERLQQFDAPPALLGFGISEPAQVKQAIEAGAAGAISGSAVV 241 (271)
T ss_dssp HHHHHHHHHHHHTTCCCEEECSSCCSHHHHHHHHHTTCSEEEESHHHH
T ss_pred hhHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEECHHHH
Confidence 223332 32222346999999999999999999999999999999884
|
| >1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=4e-06 Score=81.13 Aligned_cols=116 Identities=17% Similarity=0.122 Sum_probs=75.1
Q ss_pred HHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcc-cccccCCCcccccc
Q psy1056 336 KLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIK-FIKKEYPDMQVIGR 414 (590)
Q Consensus 336 ~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~-~~~~~~~~~~~~g~ 414 (590)
+.+.+.|++.+++..... .++.+++.+++..+.+ .+.+.++++.+.++|+|+|-+.. ..+.. +.| .
T Consensus 82 ~~a~~~gad~v~l~~~~~-------~~~~~~~~~~~~~ig~-sv~t~~~~~~a~~~gaD~i~~~~~f~~~~---~~g--~ 148 (221)
T 1yad_A 82 DIALFSTIHRVQLPSGSF-------SPKQIRARFPHLHIGR-SVHSLEEAVQAEKEDADYVLFGHVFETDC---KKG--L 148 (221)
T ss_dssp HHHHTTTCCEEEECTTSC-------CHHHHHHHCTTCEEEE-EECSHHHHHHHHHTTCSEEEEECCC-------------
T ss_pred HHHHHcCCCEEEeCCCcc-------CHHHHHHHCCCCEEEE-EcCCHHHHHHHHhCCCCEEEECCccccCC---CCC--C
Confidence 556778999998864321 1233444444444444 67799999999999999996522 11211 111 1
Q ss_pred chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCC
Q psy1056 415 NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGT 465 (590)
Q Consensus 415 ~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~ 465 (590)
....+..+++.....++|++++||| |+.++.++++.||++|.+|+.+..+
T Consensus 149 ~~~~~~~l~~~~~~~~~pvia~GGI-~~~nv~~~~~~Ga~gv~vgs~i~~~ 198 (221)
T 1yad_A 149 EGRGVSLLSDIKQRISIPVIAIGGM-TPDRLRDVKQAGADGIAVMSGIFSS 198 (221)
T ss_dssp --CHHHHHHHHHHHCCSCEEEESSC-CGGGHHHHHHTTCSEEEESHHHHTS
T ss_pred CCCCHHHHHHHHHhCCCCEEEECCC-CHHHHHHHHHcCCCEEEEhHHhhCC
Confidence 1111223333333347999999999 9999999999999999999988543
|
| >2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.27 E-value=2e-06 Score=83.70 Aligned_cols=99 Identities=14% Similarity=0.084 Sum_probs=66.1
Q ss_pred HHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCcccccc-chhHHHHHHHHHhcCC-CcEEe
Q psy1056 358 QIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRG-VPVIA 435 (590)
Q Consensus 358 ~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~-v~iia 435 (590)
.++..+.+.+. +..++.....+++.++++.++|+++| +.. .... =+|.|+ ++..+..+.+. ..+ +|||+
T Consensus 113 tv~aa~~L~k~--Gf~Vlpy~~~D~~~ak~l~~~G~~aV-mPl-g~pI---GsG~Gi~~~~~L~~i~~~--~~~~vPVI~ 183 (268)
T 2htm_A 113 TLKAAERLIEE--DFLVLPYMGPDLVLAKRLAALGTATV-MPL-AAPI---GSGWGVRTRALLELFARE--KASLPPVVV 183 (268)
T ss_dssp HHHHHHHHHHT--TCEECCEECSCHHHHHHHHHHTCSCB-EEB-SSST---TTCCCSTTHHHHHHHHHT--TTTSSCBEE
T ss_pred HHHHHHHHHHC--CCEEeeccCCCHHHHHHHHhcCCCEE-Eec-CccC---cCCcccCCHHHHHHHHHh--cCCCCeEEE
Confidence 34444444443 33333223468899999999999988 210 1111 123355 54444444431 346 99999
Q ss_pred cCCCCCHHHHHHHHHcCCCEEEECccccCC
Q psy1056 436 DGGVQSVGHVMKALALGASTAMMGSLLAGT 465 (590)
Q Consensus 436 ~GGi~~~~di~kalalGA~~v~~g~~l~~~ 465 (590)
+|||.+|.|+++|+.||||+|++|+.+..+
T Consensus 184 ~GGI~tpsDAa~AmeLGAdgVlVgSAI~~a 213 (268)
T 2htm_A 184 DAGLGLPSHAAEVMELGLDAVLVNTAIAEA 213 (268)
T ss_dssp ESCCCSHHHHHHHHHTTCCEEEESHHHHTS
T ss_pred eCCCCCHHHHHHHHHcCCCEEEEChHHhCC
Confidence 999999999999999999999999999743
|
| >1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=98.26 E-value=5e-06 Score=80.62 Aligned_cols=107 Identities=15% Similarity=0.163 Sum_probs=87.1
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCc
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDM 409 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~ 409 (590)
+..+.++.+++.|++.+.+.... ....+.++.+++.+|++.+.+|.+.+.++++.++++|+|++ +....
T Consensus 39 ~~~~~~~al~~gGv~~iel~~k~---~~~~~~i~~l~~~~~~~~igagtvl~~d~~~~A~~aGAd~v----~~p~~---- 107 (225)
T 1mxs_A 39 DILPLADALAAGGIRTLEVTLRS---QHGLKAIQVLREQRPELCVGAGTVLDRSMFAAVEAAGAQFV----VTPGI---- 107 (225)
T ss_dssp GHHHHHHHHHHTTCCEEEEESSS---THHHHHHHHHHHHCTTSEEEEECCCSHHHHHHHHHHTCSSE----ECSSC----
T ss_pred HHHHHHHHHHHCCCCEEEEecCC---ccHHHHHHHHHHhCcccEEeeCeEeeHHHHHHHHHCCCCEE----EeCCC----
Confidence 56788999999999999997543 23467888899999989888999999999999999999999 22211
Q ss_pred cccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEE
Q psy1056 410 QVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMM 458 (590)
Q Consensus 410 ~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~ 458 (590)
. .++.+.+...++|+|. |+.|+.++.+|+.+|||+|.+
T Consensus 108 -----d----~~v~~~~~~~g~~~i~--G~~t~~e~~~A~~~Gad~vk~ 145 (225)
T 1mxs_A 108 -----T----EDILEAGVDSEIPLLP--GISTPSEIMMGYALGYRRFKL 145 (225)
T ss_dssp -----C----HHHHHHHHHCSSCEEC--EECSHHHHHHHHTTTCCEEEE
T ss_pred -----C----HHHHHHHHHhCCCEEE--eeCCHHHHHHHHHCCCCEEEE
Confidence 1 2455555567899998 699999999999999999977
|
| >3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=98.24 E-value=9.6e-06 Score=80.53 Aligned_cols=135 Identities=17% Similarity=0.175 Sum_probs=87.4
Q ss_pred hhHHHHHHHHHHcCCcEEEEecC------CCc--------------h-hhHHHHHHHHHHhCCCceEEec---cc----c
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSS------QGN--------------S-IYQIEMIKFIKKEYPDMQVIGG---NV----L 380 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~------~G~--------------~-~~~l~~i~~i~~~~~~vpvi~g---~v----~ 380 (590)
+...+.++.|.++|+|++++..+ .|. + ..+++.++.+|+.++++|+++= |. +
T Consensus 32 ~~~~~~~~~l~~~GaD~iElgiPfSDP~aDGp~Iq~a~~~AL~~G~~~~~~~~~v~~ir~~~~~~Pivlm~Y~npv~~~g 111 (267)
T 3vnd_A 32 ELSLKIIQTLVDNGADALELGFPFSDPLADGPVIQGANLRSLAAGTTSSDCFDIITKVRAQHPDMPIGLLLYANLVFANG 111 (267)
T ss_dssp HHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCCEEEEECHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHhh
Confidence 34667899999999999999843 221 1 2346888889887557887742 32 2
Q ss_pred CcHHHHHHHHCCCCEEEE--------------------------ccccccc--C------CCc------cc-ccc-c--h
Q psy1056 381 FGYQPRATLLNFIYQIEM--------------------------IKFIKKE--Y------PDM------QV-IGR-N--G 416 (590)
Q Consensus 381 s~~~a~~l~~~Gvd~i~v--------------------------~~~~~~~--~------~~~------~~-~g~-~--~ 416 (590)
...-++.+.++|+|++.+ +..+... + ++| .| .|. + .
T Consensus 112 ~e~f~~~~~~aGvdgvii~Dlp~ee~~~~~~~~~~~gl~~i~liaP~t~~eri~~i~~~~~gfvY~vS~~GvTG~~~~~~ 191 (267)
T 3vnd_A 112 IDEFYTKAQAAGVDSVLIADVPVEESAPFSKAAKAHGIAPIFIAPPNADADTLKMVSEQGEGYTYLLSRAGVTGTESKAG 191 (267)
T ss_dssp HHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHHHHTTCEEECEECTTCCHHHHHHHHHHCCSCEEESCCCCCC-------
T ss_pred HHHHHHHHHHcCCCEEEeCCCCHhhHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhCCCcEEEEecCCCCCCccCCc
Confidence 244578899999999877 1111000 0 011 11 122 1 1
Q ss_pred hHHHH-HHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 417 TAVYR-VAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 417 ~~l~~-~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
..+.+ +.+..+..++|++.+|||+++.++.+++..|||+|++|+.|.
T Consensus 192 ~~~~~~v~~vr~~~~~pv~vGfGI~~~e~~~~~~~~gADgvVVGSaiv 239 (267)
T 3vnd_A 192 EPIENILTQLAEFNAPPPLLGFGIAEPEQVRAAIKAGAAGAISGSAVV 239 (267)
T ss_dssp -CHHHHHHHHHTTTCCCEEECSSCCSHHHHHHHHHTTCSEEEECHHHH
T ss_pred HHHHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHcCCCEEEECHHHH
Confidence 11222 233323346999999999999999999999999999999883
|
| >2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.24 E-value=7.5e-06 Score=81.51 Aligned_cols=181 Identities=16% Similarity=0.105 Sum_probs=97.2
Q ss_pred CHHHHHHHHHhcCCCcceEEcCCCc--eEEEEeecccccccCCCCCCcccCCceEEeEeeccchhHHHHHHHHHHcCCcE
Q psy1056 268 SLEEANVILEKSKKGKLPILNDKGE--LIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDV 345 (590)
Q Consensus 268 ~l~ea~~~m~~~~~~~lpVvd~~g~--l~Giit~~dll~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~gad~ 345 (590)
+..+..+.+.+.+.+.+.+.|.+.. ..| ...++++.... ...-++++...+.. .+.+..+.+.|++.
T Consensus 31 ~~~~~a~~~~~~Ga~~i~v~d~~~~~~~~g--~~~~~i~~i~~-----~~~iPvi~~ggi~~----~~~i~~~~~~Gad~ 99 (266)
T 2w6r_A 31 LLRDWVVEVEKRGAGEILLTSIDRDGTKSG--YDTEMIRFVRP-----LTTLPIIASGGAGK----MEHFLEAFLAGADK 99 (266)
T ss_dssp EHHHHHHHHHHHTCSEEEEEETTTSSCSSC--CCHHHHHHHGG-----GCCSCEEEESCCCS----THHHHHHHHHTCSE
T ss_pred CHHHHHHHHHHCCCCEEEEEecCcccCCCc--ccHHHHHHHHH-----hcCCCEEEECCCCC----HHHHHHHHHcCCcH
Confidence 4567788889999999999875421 111 11222222211 11223333333322 23455666789999
Q ss_pred EEEecCCCchhhHHHHHHHHHHhCC--CceE-Eeccc--------------------cCcHHHHHHHHCCCCEEEEcccc
Q psy1056 346 VILDSSQGNSIYQIEMIKFIKKEYP--DMQV-IGGNV--------------------LFGYQPRATLLNFIYQIEMIKFI 402 (590)
Q Consensus 346 i~V~~~~G~~~~~l~~i~~i~~~~~--~vpv-i~g~v--------------------~s~~~a~~l~~~Gvd~i~v~~~~ 402 (590)
+++-...-....-.+.+..+.+.++ .-.+ +.-.+ ...+-++.+.++|++.|.+ +
T Consensus 100 v~lg~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~d~~~~~g~~~v~~~g~~~~~~~~~~e~~~~~~~~G~~~i~~---t 176 (266)
T 2w6r_A 100 ALAASVFHFREIDMRELKEYLKKHGGSGQAVVVAIDAKRVDGEFMVFTHSGKKNTGILLRDWVVEVEKRGAGEILL---T 176 (266)
T ss_dssp EECCCCC------CHHHHHHCC----CCCEEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHTTCSEEEE---E
T ss_pred hhhhHHHHhCCCCHHHHHHHHHHcCCCCCEEEEEEEEEecCCCEEEEECCCceecchhHHHHHHHHHHcCCCEEEE---E
Confidence 9875543200001122333322332 1111 11111 1245578899999999944 2
Q ss_pred cccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCCC
Q psy1056 403 KKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTS 466 (590)
Q Consensus 403 ~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~~ 466 (590)
....++ ...|.. +..+.+.....++|+|++|||+++.|+.+++..|||+|++|+.|....
T Consensus 177 ~~~~~g-~~~g~~---~~~i~~l~~~~~ipvia~GGI~~~ed~~~~~~~Gadgv~vgsal~~~~ 236 (266)
T 2w6r_A 177 SIDRDG-TKSGYD---TEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFRE 236 (266)
T ss_dssp ETTTTT-TCSCCC---HHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHHTCSEEEESTTTC---
T ss_pred eecCCC-CcCCCC---HHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHcCCHHHHccHHHHcCC
Confidence 211111 011222 223344444457999999999999999999999999999999996543
|
| >1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A | Back alignment and structure |
|---|
Probab=98.23 E-value=1.4e-05 Score=84.90 Aligned_cols=120 Identities=14% Similarity=0.137 Sum_probs=85.5
Q ss_pred HHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCcccccc
Q psy1056 335 LKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGR 414 (590)
Q Consensus 335 ~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~ 414 (590)
+.+...+|+|++.++.+--....+.+.++..++ + ++.+++ +|.+.+++.++.++|++.|-+ +.|. +.....
T Consensus 123 i~ea~~~GAD~ILLi~a~l~~~~l~~l~~~a~~-l-gm~~Lv-Evh~~eE~~~A~~lga~iIGi---nnr~---L~t~~~ 193 (452)
T 1pii_A 123 IYLARYYQADACLLMLSVLDDDQYRQLAAVAHS-L-EMGVLT-EVSNEEEQERAIALGAKVVGI---NNRD---LRDLSI 193 (452)
T ss_dssp HHHHHHTTCSEEEEETTTCCHHHHHHHHHHHHH-T-TCEEEE-EECSHHHHHHHHHTTCSEEEE---ESEE---TTTTEE
T ss_pred HHHHHHcCCCEEEEEcccCCHHHHHHHHHHHHH-c-CCeEEE-EeCCHHHHHHHHHCCCCEEEE---eCCC---CCCCCC
Confidence 445888999999988775333344455555555 3 677766 999999999999999998833 2233 222222
Q ss_pred chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCC
Q psy1056 415 NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGT 465 (590)
Q Consensus 415 ~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~ 465 (590)
......++..... .++++|+.|||.|+.|+.++..+ |++|.+|+.|+.+
T Consensus 194 dl~~~~~L~~~ip-~~~~vIaEsGI~t~edv~~~~~~-a~avLVGealmr~ 242 (452)
T 1pii_A 194 DLNRTRELAPKLG-HNVTVISESGINTYAQVRELSHF-ANGFLIGSALMAH 242 (452)
T ss_dssp CTHHHHHHHHHHC-TTSEEEEESCCCCHHHHHHHTTT-CSEEEECHHHHTC
T ss_pred CHHHHHHHHHhCC-CCCeEEEECCCCCHHHHHHHHHh-CCEEEEcHHHcCC
Confidence 2233334444443 26899999999999999999999 9999999999544
|
| >1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A | Back alignment and structure |
|---|
Probab=98.22 E-value=3.9e-06 Score=82.38 Aligned_cols=121 Identities=11% Similarity=0.148 Sum_probs=83.5
Q ss_pred HHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHC-CCCEEEEcccccccCCCccccc
Q psy1056 335 LKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLN-FIYQIEMIKFIKKEYPDMQVIG 413 (590)
Q Consensus 335 ~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~-Gvd~i~v~~~~~~~~~~~~~~g 413 (590)
+.....+|+|++.++.+--....+.+.++..++ + +..+++ +|.+.++++++.++ |+|.|-+ +.|. +.+.+
T Consensus 116 i~ea~~~GAD~ilLi~a~l~~~~l~~l~~~a~~-l-Gl~~lv-Ev~~~eE~~~A~~l~g~~iIGi---nnr~---l~t~~ 186 (251)
T 1i4n_A 116 VKLASSVGADAILIIARILTAEQIKEIYEAAEE-L-GMDSLV-EVHSREDLEKVFSVIRPKIIGI---NTRD---LDTFE 186 (251)
T ss_dssp HHHHHHTTCSEEEEEGGGSCHHHHHHHHHHHHT-T-TCEEEE-EECSHHHHHHHHTTCCCSEEEE---ECBC---TTTCC
T ss_pred HHHHHHcCCCEEEEecccCCHHHHHHHHHHHHH-c-CCeEEE-EeCCHHHHHHHHhcCCCCEEEE---eCcc---cccCC
Confidence 444888999999988764222334444554444 4 676666 99999999999999 9998833 2233 22223
Q ss_pred cchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCCC
Q psy1056 414 RNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTS 466 (590)
Q Consensus 414 ~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~~ 466 (590)
.......++.+... .++++|+.|||.|+.|+.++..+ |++|.+|+.|+.+.
T Consensus 187 ~d~~~~~~l~~~ip-~~~~vIaEsGI~t~edv~~~~~~-a~avLVG~aimr~~ 237 (251)
T 1i4n_A 187 IKKNVLWELLPLVP-DDTVVVAESGIKDPRELKDLRGK-VNAVLVGTSIMKAE 237 (251)
T ss_dssp BCTTHHHHHGGGSC-TTSEEEEESCCCCGGGHHHHTTT-CSEEEECHHHHHCS
T ss_pred CCHHHHHHHHHhCC-CCCEEEEeCCCCCHHHHHHHHHh-CCEEEEcHHHcCCc
Confidence 22222223322221 25899999999999999999999 99999999996553
|
| >4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A | Back alignment and structure |
|---|
Probab=98.21 E-value=5.6e-07 Score=90.60 Aligned_cols=123 Identities=15% Similarity=0.112 Sum_probs=80.9
Q ss_pred HHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccc
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQV 411 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~ 411 (590)
.+.++.+.++|+|.+ +.+.+.. ..+.++.+++.+.+.++++ ++.+.+++++++++|+|.|.+.. +. -+|
T Consensus 90 ide~qil~aaGAD~I--d~s~~~~--~~~li~~i~~~~~g~~vvv-~v~~~~Ea~~a~~~Gad~I~v~g---~~---gTG 158 (297)
T 4adt_A 90 FVEAQILEELKVDML--DESEVLT--MADEYNHINKHKFKTPFVC-GCTNLGEALRRISEGASMIRTKG---EA---GTG 158 (297)
T ss_dssp HHHHHHHHHTTCSEE--EEETTSC--CSCSSCCCCGGGCSSCEEE-EESSHHHHHHHHHHTCSEEEECC---CT---TSC
T ss_pred HHHHHHHHHcCCCEE--EcCCCCC--HHHHHHHHHhcCCCCeEEE-EeCCHHHHHHHHhCCCCEEEECC---Cc---CCC
Confidence 455666678999998 4444311 1123444445434678877 78999999999999999995431 11 111
Q ss_pred -------c-----------------cc-c-----hhHHHHHHHHHhcCCCcEE--ecCCCCCHHHHHHHHHcCCCEEEEC
Q psy1056 412 -------I-----------------GR-N-----GTAVYRVAEYASRRGVPVI--ADGGVQSVGHVMKALALGASTAMMG 459 (590)
Q Consensus 412 -------~-----------------g~-~-----~~~l~~~~~~~~~~~v~ii--a~GGi~~~~di~kalalGA~~v~~g 459 (590)
| +. + ...+..+.+.....++|++ ++|||+|+.|+.+++.+|||+|++|
T Consensus 159 ~~~~~v~h~~~~~~eir~l~~~~~d~L~t~~~~~~~~~~ll~~i~~~~~iPVivvA~GGI~t~~dv~~~~~~GAdgVlVG 238 (297)
T 4adt_A 159 NIIEAIKHIRTVNNEIKYLCSLDESEVYNFAKKLRAPIDLILLTRKLKRLPVVNFAAGGIATPADAAMCMQLGMDGVFVG 238 (297)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHSCTTTHHHHHHHHTCCHHHHHHHHHHTSCSSEEEEESCCCSHHHHHHHHHTTCSCEEES
T ss_pred chHHHHHHHHHhhhhhhhhccccccccccccccCCCCHHHHHHHHHhcCCCeEEEecCCCCCHHHHHHHHHcCCCEEEEh
Confidence 0 10 0 1112223333333457876 9999999999999999999999999
Q ss_pred ccccCC
Q psy1056 460 SLLAGT 465 (590)
Q Consensus 460 ~~l~~~ 465 (590)
+.|..+
T Consensus 239 sai~~a 244 (297)
T 4adt_A 239 SGIFES 244 (297)
T ss_dssp HHHHTS
T ss_pred HHHHcC
Confidence 998654
|
| >1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A | Back alignment and structure |
|---|
Probab=98.21 E-value=6.5e-06 Score=81.90 Aligned_cols=133 Identities=17% Similarity=0.161 Sum_probs=84.5
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCC--------------------c-hhhHHHHHHHHHHhCCCceEEec---cccCcHHH
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQG--------------------N-SIYQIEMIKFIKKEYPDMQVIGG---NVLFGYQP 385 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G--------------------~-~~~~l~~i~~i~~~~~~vpvi~g---~v~s~~~a 385 (590)
...+.++.+.++|+|.++++.+.. . .....+.++.+++.. ++|+++- +.......
T Consensus 33 ~~~~~~~~l~~~Gad~ielg~p~~dp~~dg~~i~~a~~~al~~g~~~~~~~~~i~~ir~~~-~~Pv~~m~~~~~~~~~~~ 111 (262)
T 1rd5_A 33 TTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPEL-SCPVVLLSYYKPIMFRSL 111 (262)
T ss_dssp HHHHHHHHHHHTTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHHHHHHHGGGC-SSCEEEECCSHHHHSCCT
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCCcccCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-CCCEEEEecCcHHHHHHH
Confidence 456778889999999999986432 1 133467788888775 7888752 11111123
Q ss_pred HHHHHCCCCEEEEc--------------------------ccccccC--------CC------ccc-ccc-c---hhHHH
Q psy1056 386 RATLLNFIYQIEMI--------------------------KFIKKEY--------PD------MQV-IGR-N---GTAVY 420 (590)
Q Consensus 386 ~~l~~~Gvd~i~v~--------------------------~~~~~~~--------~~------~~~-~g~-~---~~~l~ 420 (590)
..+.++|+|++.+. .++.... .+ ..| .|. + ...+.
T Consensus 112 ~~a~~aGadgv~v~d~~~~~~~~~~~~~~~~g~~~i~~~a~~t~~e~~~~~~~~~~g~v~~~s~~G~tG~~~~~~~~~~~ 191 (262)
T 1rd5_A 112 AKMKEAGVHGLIVPDLPYVAAHSLWSEAKNNNLELVLLTTPAIPEDRMKEITKASEGFVYLVSVNGVTGPRANVNPRVES 191 (262)
T ss_dssp HHHHHTTCCEEECTTCBTTTHHHHHHHHHHTTCEECEEECTTSCHHHHHHHHHHCCSCEEEECSSCCBCTTSCBCTHHHH
T ss_pred HHHHHcCCCEEEEcCCChhhHHHHHHHHHHcCCceEEEECCCCCHHHHHHHHhcCCCeEEEecCCCCCCCCcCCCchHHH
Confidence 44889999988650 0000000 01 111 121 1 11222
Q ss_pred HHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 421 RVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 421 ~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
.++...+..++||+++|||+|+.++.+++++|||.|.+|+.+.
T Consensus 192 ~i~~v~~~~~~pI~vgGGI~~~e~~~~~~~~GAdgvvVGSai~ 234 (262)
T 1rd5_A 192 LIQEVKKVTNKPVAVGFGISKPEHVKQIAQWGADGVIIGSAMV 234 (262)
T ss_dssp HHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEECHHHH
T ss_pred HHHHHHhhcCCeEEEECCcCCHHHHHHHHHcCCCEEEEChHHH
Confidence 3444433347999999999999999999999999999999884
|
| >1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A | Back alignment and structure |
|---|
Probab=98.17 E-value=1.7e-05 Score=77.99 Aligned_cols=132 Identities=16% Similarity=0.055 Sum_probs=87.8
Q ss_pred hHHHHHHHHHHcCCcEEEEec------CCCc---------------hhhHHHHHHHHHHhCCCceEEeccccC-------
Q psy1056 330 ADKNRLKLLSQAGVDVVILDS------SQGN---------------SIYQIEMIKFIKKEYPDMQVIGGNVLF------- 381 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~------~~G~---------------~~~~l~~i~~i~~~~~~vpvi~g~v~s------- 381 (590)
...+.++.+.+. +|.++++. ..|. .....+.++.+++.. ++|+.+....+
T Consensus 20 ~~~~~a~~~~~~-ad~iel~~p~sdp~~DG~~~~~~~~~al~~g~~~~~~~~~i~~i~~~~-~~pv~~~~~~~~~~~~~~ 97 (248)
T 1geq_A 20 STLNFLLALDEY-AGAIELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRHS-STPIVLMTYYNPIYRAGV 97 (248)
T ss_dssp HHHHHHHHHGGG-BSCEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTC-CCCEEEEECHHHHHHHCH
T ss_pred HHHHHHHHHHHc-CCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhC-CCCEEEEeccchhhhcCH
Confidence 556778888888 99999993 3332 123467888888876 67877655333
Q ss_pred cHHHHHHHHCCCCEEEEcc------------------------c-ccccC--C----Cccc-------ccc--c-----h
Q psy1056 382 GYQPRATLLNFIYQIEMIK------------------------F-IKKEY--P----DMQV-------IGR--N-----G 416 (590)
Q Consensus 382 ~~~a~~l~~~Gvd~i~v~~------------------------~-~~~~~--~----~~~~-------~g~--~-----~ 416 (590)
.+.++.+.++|+|+|.+.. . .+... . +..+ .|. + .
T Consensus 98 ~~~~~~~~~~Gad~v~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~t~~e~~~~~~~~~d~~i~~~~~~G~~g~~~~~~~ 177 (248)
T 1geq_A 98 RNFLAEAKASGVDGILVVDLPVFHAKEFTEIAREEGIKTVFLAAPNTPDERLKVIDDMTTGFVYLVSLYGTTGAREEIPK 177 (248)
T ss_dssp HHHHHHHHHHTCCEEEETTCCGGGHHHHHHHHHHHTCEEEEEECTTCCHHHHHHHHHHCSSEEEEECCC-------CCCH
T ss_pred HHHHHHHHHCCCCEEEECCCChhhHHHHHHHHHHhCCCeEEEECCCCHHHHHHHHHhcCCCeEEEEECCccCCCCCCCCh
Confidence 4788999999999997610 0 00000 0 0000 111 1 1
Q ss_pred hHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 417 TAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 417 ~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
..+..+++..+..++|++++|||+++.++.+.+.+|||+|.+|+.+.
T Consensus 178 ~~~~~i~~l~~~~~~pi~~~GGI~~~e~i~~~~~~Gad~vivGsai~ 224 (248)
T 1geq_A 178 TAYDLLRRAKRICRNKVAVGFGVSKREHVVSLLKEGANGVVVGSALV 224 (248)
T ss_dssp HHHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEECHHHH
T ss_pred hHHHHHHHHHhhcCCCEEEEeecCCHHHHHHHHHcCCCEEEEcHHHH
Confidence 22333444444447999999999999999999999999999999883
|
| >3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=98.15 E-value=1.5e-05 Score=76.46 Aligned_cols=118 Identities=19% Similarity=0.124 Sum_probs=79.5
Q ss_pred HHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEe--ccccCc-HHHHHHHHCCCCEEEEcccccccCCCcc
Q psy1056 334 RLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIG--GNVLFG-YQPRATLLNFIYQIEMIKFIKKEYPDMQ 410 (590)
Q Consensus 334 ~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~--g~v~s~-~~a~~l~~~Gvd~i~v~~~~~~~~~~~~ 410 (590)
.++.+.++|++.+.++...+ .....+.++.+++. +.++++ -++.+. +.++.+.++|+|+|.+.. . ++
T Consensus 69 ~~~~~~~~Gad~v~v~~~~~-~~~~~~~~~~~~~~--g~~~~v~~~~~~t~~~~~~~~~~~g~d~i~v~~----g---~~ 138 (211)
T 3f4w_A 69 ESQLLFDAGADYVTVLGVTD-VLTIQSCIRAAKEA--GKQVVVDMICVDDLPARVRLLEEAGADMLAVHT----G---TD 138 (211)
T ss_dssp HHHHHHHTTCSEEEEETTSC-HHHHHHHHHHHHHH--TCEEEEECTTCSSHHHHHHHHHHHTCCEEEEEC----C---HH
T ss_pred HHHHHHhcCCCEEEEeCCCC-hhHHHHHHHHHHHc--CCeEEEEecCCCCHHHHHHHHHHcCCCEEEEcC----C---Cc
Confidence 47888999999999876543 22334556666665 566654 234443 668999999999984421 1 21
Q ss_pred c--ccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccC
Q psy1056 411 V--IGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAG 464 (590)
Q Consensus 411 ~--~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~ 464 (590)
+ .+. ....+.++++.. .++|++++|||+ +.++.+++.+|||+|.+|+.+..
T Consensus 139 g~~~~~~~~~~i~~l~~~~--~~~~i~~~gGI~-~~~~~~~~~~Gad~vvvGsai~~ 192 (211)
T 3f4w_A 139 QQAAGRKPIDDLITMLKVR--RKARIAVAGGIS-SQTVKDYALLGPDVVIVGSAITH 192 (211)
T ss_dssp HHHTTCCSHHHHHHHHHHC--SSCEEEEESSCC-TTTHHHHHTTCCSEEEECHHHHT
T ss_pred ccccCCCCHHHHHHHHHHc--CCCcEEEECCCC-HHHHHHHHHcCCCEEEECHHHcC
Confidence 1 111 223333444332 269999999995 99999999999999999998853
|
| >2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.12 E-value=2.5e-05 Score=77.67 Aligned_cols=133 Identities=19% Similarity=0.242 Sum_probs=85.7
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCch---------------------hhHHHHHHHHHHhCCCceEEec---c-cc---C
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNS---------------------IYQIEMIKFIKKEYPDMQVIGG---N-VL---F 381 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~---------------------~~~l~~i~~i~~~~~~vpvi~g---~-v~---s 381 (590)
...+.++.+.++|+|++.+..+..++ ..+++.++.+++..|++|+++= | +. .
T Consensus 32 ~~~~~~~~l~~~G~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pi~~m~y~n~v~~~g~ 111 (262)
T 2ekc_A 32 TSLKAFKEVLKNGTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVLELSETLRKEFPDIPFLLMTYYNPIFRIGL 111 (262)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEECCHHHHHHHCH
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCEEEEecCcHHHHhhH
Confidence 45678899999999999998754321 2345778999998778898761 1 11 2
Q ss_pred cHHHHHHHHCCCCEEEE--------------------------ccccccc--------CCCc------c-cccc-ch---
Q psy1056 382 GYQPRATLLNFIYQIEM--------------------------IKFIKKE--------YPDM------Q-VIGR-NG--- 416 (590)
Q Consensus 382 ~~~a~~l~~~Gvd~i~v--------------------------~~~~~~~--------~~~~------~-~~g~-~~--- 416 (590)
...++.+.++|+|++.+ +..+... ..+| . ..|. +.
T Consensus 112 ~~f~~~~~~aG~dgvii~dl~~ee~~~~~~~~~~~gl~~i~l~~p~t~~~rl~~ia~~a~gfiy~vs~~g~TG~~~~~~~ 191 (262)
T 2ekc_A 112 EKFCRLSREKGIDGFIVPDLPPEEAEELKAVMKKYVLSFVPLGAPTSTRKRIKLICEAADEMTYFVSVTGTTGAREKLPY 191 (262)
T ss_dssp HHHHHHHHHTTCCEEECTTCCHHHHHHHHHHHHHTTCEECCEECTTCCHHHHHHHHHHCSSCEEEESSCC---------C
T ss_pred HHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCCEEEEecCCccCCCCCcCc
Confidence 45678889999999876 0000000 0000 0 1122 21
Q ss_pred hHHH-HHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 417 TAVY-RVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 417 ~~l~-~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
..+. .+....+..++|++++|||+++.++.+ +..|||+|++|+.|.
T Consensus 192 ~~~~~~v~~vr~~~~~pv~vG~GI~t~e~~~~-~~~gADgvIVGSai~ 238 (262)
T 2ekc_A 192 ERIKKKVEEYRELCDKPVVVGFGVSKKEHARE-IGSFADGVVVGSALV 238 (262)
T ss_dssp HHHHHHHHHHHHHCCSCEEEESSCCSHHHHHH-HHTTSSEEEECHHHH
T ss_pred ccHHHHHHHHHhhcCCCEEEeCCCCCHHHHHH-HHcCCCEEEECHHHH
Confidence 1122 233333334799999999999999988 889999999999984
|
| >1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ... | Back alignment and structure |
|---|
Probab=98.08 E-value=3.4e-05 Score=80.32 Aligned_cols=127 Identities=13% Similarity=0.073 Sum_probs=86.7
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCc------------------------hhhHHHHHHHHHHhCCCceEEec----c-cc
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGN------------------------SIYQIEMIKFIKKEYPDMQVIGG----N-VL 380 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~------------------------~~~~l~~i~~i~~~~~~vpvi~g----~-v~ 380 (590)
+..+.++.+.++|+|.|.|+.++|+ .+..++.++.+++..++-||.++ + ..
T Consensus 162 ~f~~aA~~a~~aGfDgVeih~a~GyLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr~~vg~~~v~vrls~~~~~~ 241 (364)
T 1vyr_A 162 DFRQAVANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTFQ 241 (364)
T ss_dssp HHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHSCGGGEEEEECCSSCBT
T ss_pred HHHHHHHHHHHcCCCEEEEcCccchHHHhccCCcccccCCcCCcchhcChhhHHHHHHHHHHhcCCCcEEEEEccccccc
Confidence 4455677778899999999876542 12357889999998853377762 1 11
Q ss_pred -------CcHH----HHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHH
Q psy1056 381 -------FGYQ----PRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKAL 449 (590)
Q Consensus 381 -------s~~~----a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kal 449 (590)
+.++ ++.|.++|+|+|.++..+... .. +.....+..++ +..++|||+.||| ++.++.++|
T Consensus 242 ~~~~~~~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~---~~--~~~~~~~~~v~---~~~~iPvi~~Ggi-t~~~a~~~l 312 (364)
T 1vyr_A 242 NVDNGPNEEADALYLIEELAKRGIAYLHMSETDLAG---GK--PYSEAFRQKVR---ERFHGVIIGAGAY-TAEKAEDLI 312 (364)
T ss_dssp TBCCCTTHHHHHHHHHHHHHHTTCSEEEEECCBTTB---CC--CCCHHHHHHHH---HHCCSEEEEESSC-CHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHhCCCEEEEecCcccC---CC--cccHHHHHHHH---HHCCCCEEEECCc-CHHHHHHHH
Confidence 2333 788889999999775322111 00 11222222333 3457999999999 999999999
Q ss_pred HcC-CCEEEECccccCC
Q psy1056 450 ALG-ASTAMMGSLLAGT 465 (590)
Q Consensus 450 alG-A~~v~~g~~l~~~ 465 (590)
+.| ||+|++|+++..-
T Consensus 313 ~~g~aD~V~~gR~~l~~ 329 (364)
T 1vyr_A 313 GKGLIDAVAFGRDYIAN 329 (364)
T ss_dssp HTTSCSEEEESHHHHHC
T ss_pred HCCCccEEEECHHHHhC
Confidence 999 9999999988643
|
| >3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=98.06 E-value=4.7e-05 Score=73.71 Aligned_cols=119 Identities=14% Similarity=0.069 Sum_probs=84.5
Q ss_pred HHHHHHHHcCCcEEEEecC-----CCchhhHHHHHHHHHHhCCC--ceEEecccc--CcHHHHHH----HHCCCCEEEEc
Q psy1056 333 NRLKLLSQAGVDVVILDSS-----QGNSIYQIEMIKFIKKEYPD--MQVIGGNVL--FGYQPRAT----LLNFIYQIEMI 399 (590)
Q Consensus 333 e~~~~li~~gad~i~V~~~-----~G~~~~~l~~i~~i~~~~~~--vpvi~g~v~--s~~~a~~l----~~~Gvd~i~v~ 399 (590)
..++..++.|++-+-+..+ .|+...+.+.|+.+++..++ +++|+ +.. +.+...++ .++|+|+|+.|
T Consensus 99 ~Ea~~Ai~~GAdEIDmViNig~lk~g~~~~v~~eI~~v~~a~~~~~lKVIl-Et~~Lt~eei~~a~~ia~~aGADfVKTS 177 (239)
T 3ngj_A 99 YETKVAVEQGAEEVDMVINIGMVKAKKYDDVEKDVKAVVDASGKALTKVII-ECCYLTNEEKVEVCKRCVAAGAEYVKTS 177 (239)
T ss_dssp HHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHHTTSEEEEEC-CGGGSCHHHHHHHHHHHHHHTCSEEECC
T ss_pred HHHHHHHHcCCCEEEEEeehHHhccccHHHHHHHHHHHHHHhcCCceEEEE-ecCCCCHHHHHHHHHHHHHHCcCEEECC
Confidence 3567778889998766543 36667788888888877543 56665 333 66666655 78999999432
Q ss_pred ccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECc
Q psy1056 400 KFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGS 460 (590)
Q Consensus 400 ~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~ 460 (590)
- ||...|.|+..+...++... .+++|.++|||||..|+.+.+.+||+.+...+
T Consensus 178 T-------Gf~~ggAt~~dv~lmr~~vg-~~v~VKasGGIrt~~da~~~i~aGA~riGtS~ 230 (239)
T 3ngj_A 178 T-------GFGTHGATPEDVKLMKDTVG-DKALVKAAGGIRTFDDAMKMINNGASRIGASA 230 (239)
T ss_dssp C-------SSSSCCCCHHHHHHHHHHHG-GGSEEEEESSCCSHHHHHHHHHTTEEEEEESC
T ss_pred C-------CCCCCCCCHHHHHHHHHhhC-CCceEEEeCCCCCHHHHHHHHHhcccceeccc
Confidence 1 13222337777766776653 46999999999999999999999999875543
|
| >2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=3.3e-05 Score=80.51 Aligned_cols=127 Identities=11% Similarity=-0.017 Sum_probs=85.7
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCch------------------------hhHHHHHHHHHHhCCCceEEeccc------
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNS------------------------IYQIEMIKFIKKEYPDMQVIGGNV------ 379 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~------------------------~~~l~~i~~i~~~~~~vpvi~g~v------ 379 (590)
+..+.++.+.++|+|.|.|+.++|+. +...+.++.+++..+.-||.++=-
T Consensus 162 ~f~~aA~~a~~aGfDgVeih~a~gYLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr~~vg~~pv~vris~~~~~~ 241 (365)
T 2gou_A 162 DYRQAALNAMEAGFDGIELHAANGYLINQFIDSEANNRSDEYGGSLENRLRFLDEVVAALVDAIGAERVGVRLAPLTTLN 241 (365)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSGGGCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECSSCCTT
T ss_pred HHHHHHHHHHHcCCCEEEEecccchhHhhccCCCccCcCcccCcchhhhHHHHHHHHHHHHHHcCCCcEEEEEccccccC
Confidence 44456777788999999998765311 235678888988874227776211
Q ss_pred -----cCcHH----HHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHH
Q psy1056 380 -----LFGYQ----PRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALA 450 (590)
Q Consensus 380 -----~s~~~----a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kala 450 (590)
.+.++ ++.|.++|+|+|.++..+... .. +.....+..++ +..++|||+.||| ++.++.++|+
T Consensus 242 ~~~~~~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~---~~--~~~~~~~~~i~---~~~~iPvi~~Ggi-~~~~a~~~l~ 312 (365)
T 2gou_A 242 GTVDADPILTYTAAAALLNKHRIVYLHIAEVDWDD---AP--DTPVSFKRALR---EAYQGVLIYAGRY-NAEKAEQAIN 312 (365)
T ss_dssp SCCCSSHHHHHHHHHHHHHHTTCSEEEEECCBTTB---CC--CCCHHHHHHHH---HHCCSEEEEESSC-CHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcCC---CC--CccHHHHHHHH---HHCCCcEEEeCCC-CHHHHHHHHH
Confidence 12333 788889999999775322111 00 11122223333 3356999999999 9999999999
Q ss_pred cC-CCEEEECccccCC
Q psy1056 451 LG-ASTAMMGSLLAGT 465 (590)
Q Consensus 451 lG-A~~v~~g~~l~~~ 465 (590)
.| ||+|++|+.|..-
T Consensus 313 ~g~aD~V~igR~~i~~ 328 (365)
T 2gou_A 313 DGLADMIGFGRPFIAN 328 (365)
T ss_dssp TTSCSEEECCHHHHHC
T ss_pred CCCcceehhcHHHHhC
Confidence 99 9999999988643
|
| >2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=3e-05 Score=74.38 Aligned_cols=109 Identities=17% Similarity=0.214 Sum_probs=75.8
Q ss_pred HHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCcccc
Q psy1056 333 NRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVI 412 (590)
Q Consensus 333 e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~ 412 (590)
+.++.+.+.|++.+++.. . . .+.++..++ + +.+++++ +.|++++.++.++|+|+|.+- .+.. .
T Consensus 71 ~~i~~a~~~Gad~V~~~~--~-~---~~~~~~~~~-~-g~~~~~g-~~t~~e~~~a~~~G~d~v~v~--~t~~------~ 133 (212)
T 2v82_A 71 EQVDALARMGCQLIVTPN--I-H---SEVIRRAVG-Y-GMTVCPG-CATATEAFTALEAGAQALKIF--PSSA------F 133 (212)
T ss_dssp HHHHHHHHTTCCEEECSS--C-C---HHHHHHHHH-T-TCEEECE-ECSHHHHHHHHHTTCSEEEET--THHH------H
T ss_pred HHHHHHHHcCCCEEEeCC--C-C---HHHHHHHHH-c-CCCEEee-cCCHHHHHHHHHCCCCEEEEe--cCCC------C
Confidence 467888899999997322 1 1 233444433 4 5677776 889999999999999999541 1100 0
Q ss_pred ccchhHHHHHHHHHhcC--CCcEEecCCCCCHHHHHHHHHcCCCEEEECccccC
Q psy1056 413 GRNGTAVYRVAEYASRR--GVPVIADGGVQSVGHVMKALALGASTAMMGSLLAG 464 (590)
Q Consensus 413 g~~~~~l~~~~~~~~~~--~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~ 464 (590)
.... +.+..... ++|++++|||. +.++.+++++||++|.+|+.|..
T Consensus 134 --g~~~---~~~l~~~~~~~ipvia~GGI~-~~~i~~~~~~Ga~gv~vGsai~~ 181 (212)
T 2v82_A 134 --GPQY---IKALKAVLPSDIAVFAVGGVT-PENLAQWIDAGCAGAGLGSDLYR 181 (212)
T ss_dssp --CHHH---HHHHHTTSCTTCEEEEESSCC-TTTHHHHHHHTCSEEEECTTTCC
T ss_pred --CHHH---HHHHHHhccCCCeEEEeCCCC-HHHHHHHHHcCCCEEEEChHHhC
Confidence 2222 33333333 49999999996 99999999999999999998853
|
| >3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=1.4e-05 Score=77.10 Aligned_cols=122 Identities=14% Similarity=0.076 Sum_probs=82.6
Q ss_pred HHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEE--eccccCcHHHHHHHHCCCCEEEEcccccccCCCccc
Q psy1056 334 RLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVI--GGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQV 411 (590)
Q Consensus 334 ~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi--~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~ 411 (590)
.++.+.++|++.+.++...+. +.+.+.++.+++. +.+.+ +=++.|.+.++.+.+.|+|++.+....+.. +.|
T Consensus 75 ~~~~~~~aGad~i~vh~~~~~-~~~~~~~~~~~~~--g~~~~~d~l~~~T~~~~~~~~~~g~d~v~~~~~~~~~---~~g 148 (218)
T 3jr2_A 75 LSRMAFEAGADWITVSAAAHI-ATIAACKKVADEL--NGEIQIEIYGNWTMQDAKAWVDLGITQAIYHRSRDAE---LAG 148 (218)
T ss_dssp HHHHHHHHTCSEEEEETTSCH-HHHHHHHHHHHHH--TCEEEEECCSSCCHHHHHHHHHTTCCEEEEECCHHHH---HHT
T ss_pred HHHHHHhcCCCEEEEecCCCH-HHHHHHHHHHHHh--CCccceeeeecCCHHHHHHHHHcCccceeeeeccccc---cCC
Confidence 567888999999999876542 2234555666665 45443 335568889999999999988441111111 211
Q ss_pred cccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 412 IGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 412 ~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
.......+..+++... .++|++++||| ++..+.++++.|||.+.+|+++.
T Consensus 149 ~~~~~~~l~~i~~~~~-~~~pi~v~GGI-~~~~~~~~~~aGAd~vvvGsaI~ 198 (218)
T 3jr2_A 149 IGWTTDDLDKMRQLSA-LGIELSITGGI-VPEDIYLFEGIKTKTFIAGRALA 198 (218)
T ss_dssp CCSCHHHHHHHHHHHH-TTCEEEEESSC-CGGGGGGGTTSCEEEEEESGGGS
T ss_pred CcCCHHHHHHHHHHhC-CCCCEEEECCC-CHHHHHHHHHcCCCEEEEchhhc
Confidence 1113344555555442 46999999999 58999999999999999999884
|
| >1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A | Back alignment and structure |
|---|
Probab=98.02 E-value=1.8e-05 Score=87.15 Aligned_cols=183 Identities=16% Similarity=0.060 Sum_probs=108.4
Q ss_pred CHHHHHHHHHhcCCCcceEEcCCCceEEEEee---cccccccCCCCCCcccCCceEEeEeeccc-------hhHHHHHHH
Q psy1056 268 SLEEANVILEKSKKGKLPILNDKGELIALIAR---TDLKKSRDYPDSSKDENNQLIVGAAIGTR-------EADKNRLKL 337 (590)
Q Consensus 268 ~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~---~dll~~~~~~~~~~d~~~~l~v~a~i~~~-------~~~~e~~~~ 337 (590)
...+..+.+.+.+...+-++|=++..-|-..+ .++++..... ..-.+.++..+... .+..+.++.
T Consensus 281 dp~~~A~~~~~~Ga~~l~~~dl~~~~~~~~~~~~~~~~i~~i~~~-----~~ipi~vgGGIr~~~d~~~~~~~~~~~a~~ 355 (555)
T 1jvn_A 281 KPVQLAQKYYQQGADEVTFLNITSFRDCPLKDTPMLEVLKQAAKT-----VFVPLTVGGGIKDIVDVDGTKIPALEVASL 355 (555)
T ss_dssp HHHHHHHHHHHTTCSEEEEEEEC---CCCGGGCHHHHHHHHHTTT-----CCSCEEEESSCSCEECTTCCEECHHHHHHH
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCccccccCCCchHHHHHHHHHhh-----CCCcEEEeCccccchhcccccchHHHHHHH
Confidence 34566777888899999998743321111011 1223322211 12234444444322 236688999
Q ss_pred HHHcCCcEEEEecCCCc----------hhhHHHHHHHHHHhCCC-ceEE---ecc-------------------------
Q psy1056 338 LSQAGVDVVILDSSQGN----------SIYQIEMIKFIKKEYPD-MQVI---GGN------------------------- 378 (590)
Q Consensus 338 li~~gad~i~V~~~~G~----------~~~~l~~i~~i~~~~~~-vpvi---~g~------------------------- 378 (590)
++++|++.+.|++.--. ...-.+.++.+.+.|++ .-++ ++.
T Consensus 356 ~l~aGad~V~igt~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~ivv~iD~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 435 (555)
T 1jvn_A 356 YFRSGADKVSIGTDAVYAAEKYYELGNRGDGTSPIETISKAYGAQAVVISVDPKRVYVNSQADTKNKVFETEYPGPNGEK 435 (555)
T ss_dssp HHHHTCSEEEECHHHHHHHHHHHHTTSCCCSCSHHHHHHHHHCGGGEEEEECEEEEEESSGGGCSSCCEECSSCCTTCCC
T ss_pred HHHcCCCEEEECCHHhhCchhhccccccccCHHHHHHHHHHhCCCcEEEEEEccccccccccccccccccccccCCCCCc
Confidence 99999999999764200 00013567777776642 1222 221
Q ss_pred ----------------ccCcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCH
Q psy1056 379 ----------------VLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSV 442 (590)
Q Consensus 379 ----------------v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~ 442 (590)
+...+.++++.++|++.|.+ +.+.++|.. -|...+.+.++.+ ..++||||+|||.++
T Consensus 436 ~~~~~v~~~Gw~~~~~~~~~e~a~~~~~~Ga~~il~---t~~~~dG~~-~G~d~~li~~l~~---~~~iPVIasGGi~s~ 508 (555)
T 1jvn_A 436 YCWYQCTIKGGRESRDLGVWELTRACEALGAGEILL---NCIDKDGSN-SGYDLELIEHVKD---AVKIPVIASSGAGVP 508 (555)
T ss_dssp EEEEEEEETTTTEEEEEEHHHHHHHHHHTTCCEEEE---CCGGGTTTC-SCCCHHHHHHHHH---HCSSCEEECSCCCSH
T ss_pred ceeEEEEEecCccCCCCCHHHHHHHHHHcCCCEEEE---eCCCCCCCC-CCCCHHHHHHHHH---hCCccEEEECCCCCH
Confidence 11347889999999999943 333211110 1233334444443 356999999999999
Q ss_pred HHHHHHHH-cCCCEEEECccc
Q psy1056 443 GHVMKALA-LGASTAMMGSLL 462 (590)
Q Consensus 443 ~di~kala-lGA~~v~~g~~l 462 (590)
.|+.+++. .||++|++|+.|
T Consensus 509 ~d~~~~~~~~G~~gvivg~a~ 529 (555)
T 1jvn_A 509 EHFEEAFLKTRADACLGAGMF 529 (555)
T ss_dssp HHHHHHHHHSCCSEEEESHHH
T ss_pred HHHHHHHHhcCChHHHHHHHH
Confidence 99999998 899999999988
|
| >2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=2.4e-06 Score=86.72 Aligned_cols=126 Identities=14% Similarity=0.049 Sum_probs=77.2
Q ss_pred HHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCc--
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDM-- 409 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~-- 409 (590)
.+.++.+.++|++.+....... . .+.++.+++...++++++ ++.+++.+..+.++|+|+|-+....+.. +-+
T Consensus 90 ~~~~~~~~~aGad~v~~~~~~~-~---~~~~~~~~~~~~~i~l~~-~v~~~~~~~~a~~~Gad~I~v~G~~~~g-~~~e~ 163 (297)
T 2zbt_A 90 FVEAMILEAIGVDFIDESEVLT-P---ADEEHHIDKWKFKVPFVC-GARNLGEALRRIAEGAAMIRTKGEAGTG-NVVEA 163 (297)
T ss_dssp HHHHHHHHHTTCSEEEEETTSC-C---SCSSCCCCGGGCSSCEEE-EESSHHHHHHHHHTTCSEEEECCCSSSC-CTHHH
T ss_pred HHHHHHHHHCCCCEEeeeCCCC-h---HHHHHHHHHhCCCceEEe-ecCCHHHHHHHHHcCCCEEEEcccccCc-chHHH
Confidence 5677888899999993322111 1 112223333233677765 4778999999999999998443100000 000
Q ss_pred c------------ccccc-h----------hHHHHHHHHHhcCCCcEE--ecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 410 Q------------VIGRN-G----------TAVYRVAEYASRRGVPVI--ADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 410 ~------------~~g~~-~----------~~l~~~~~~~~~~~v~ii--a~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
. -.|++ . ..+..+++.....++|+| ++|||+|+.|+.+++.+|||+|++|+.+.
T Consensus 164 ~~~~~~~~~~i~~~~g~t~~~~~~~~~~~~~~~~~i~~l~~~~~~pvi~~a~GGI~~~e~i~~~~~aGadgvvvGsai~ 242 (297)
T 2zbt_A 164 VRHARTMWKEIRYVQSLREDELMAYAKEIGAPFELVKWVHDHGRLPVVNFAAGGIATPADAALMMHLGMDGVFVGSGIF 242 (297)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGHHHHHHHHTCCHHHHHHHHHHSSCSSCEEBCSSCCSHHHHHHHHHTTCSEEEECGGGG
T ss_pred HhhHHHHHHHHHHcCCcCCCCchhhhhcchhhHHHHHHHHHhcCCCcEEEeeCCCCCHHHHHHHHHcCCCEEEEchHHh
Confidence 0 00110 0 012223333333468988 99999999999999999999999999884
|
| >3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=98.01 E-value=0.00012 Score=72.64 Aligned_cols=121 Identities=15% Similarity=0.106 Sum_probs=84.6
Q ss_pred HHHHHHHHcCCcEEEEecC-----CCchhhHHHHHHHHHHhCCC--ceEEeccc-cCcHH----HHHHHHCCCCEEEEcc
Q psy1056 333 NRLKLLSQAGVDVVILDSS-----QGNSIYQIEMIKFIKKEYPD--MQVIGGNV-LFGYQ----PRATLLNFIYQIEMIK 400 (590)
Q Consensus 333 e~~~~li~~gad~i~V~~~-----~G~~~~~l~~i~~i~~~~~~--vpvi~g~v-~s~~~----a~~l~~~Gvd~i~v~~ 400 (590)
..++..++.|++-|-+... .|+...+.+.|..+++..++ +.+|+-.. .+.++ ++.+.++|+|+|+.|
T Consensus 130 ~Ea~~Ai~~GAdEIDmVINig~lk~g~~~~v~~eI~~V~~a~~~~~lKVIlEt~~Lt~eei~~A~~ia~eaGADfVKTS- 208 (288)
T 3oa3_A 130 SEAKRAMQNGASELDMVMNYPWLSEKRYTDVFQDIRAVRLAAKDAILKVILETSQLTADEIIAGCVLSSLAGADYVKTS- 208 (288)
T ss_dssp HHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCGGGCCHHHHHHHHHHHHHTTCSEEECC-
T ss_pred HHHHHHHHcCCCEEEEEeehhhhcCCcHHHHHHHHHHHHHHhcCCCceEEEECCCCCHHHHHHHHHHHHHcCCCEEEcC-
Confidence 3677788899998765443 35666778888888887532 45554322 25555 566778999999433
Q ss_pred cccccCCCccccccchhHHHHHHHHHh--cCCCcEEecCCCCCHHHHHHHHHcCCCEEEECc
Q psy1056 401 FIKKEYPDMQVIGRNGTAVYRVAEYAS--RRGVPVIADGGVQSVGHVMKALALGASTAMMGS 460 (590)
Q Consensus 401 ~~~~~~~~~~~~g~~~~~l~~~~~~~~--~~~v~iia~GGi~~~~di~kalalGA~~v~~g~ 460 (590)
+ ||...|.|+..+...++..+ ..+++|.++||||+..|+.+.+.+||+.+...+
T Consensus 209 -T-----Gf~~~GAT~edv~lmr~~v~~~g~~v~VKAAGGIrt~edAl~mi~aGA~RiGtS~ 264 (288)
T 3oa3_A 209 -T-----GFNGPGASIENVSLMSAVCDSLQSETRVKASGGIRTIEDCVKMVRAGAERLGASA 264 (288)
T ss_dssp -C-----SSSSCCCCHHHHHHHHHHHHHSSSCCEEEEESSCCSHHHHHHHHHTTCSEEEESC
T ss_pred -C-----CCCCCCCCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHcCCceeehhh
Confidence 1 13333446666666666654 346999999999999999999999999875543
|
| >3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=6.4e-05 Score=77.49 Aligned_cols=131 Identities=16% Similarity=0.064 Sum_probs=86.9
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCC--------------------c----hhhHHHHHHHHHHhCC-CceEEecccc----
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQG--------------------N----SIYQIEMIKFIKKEYP-DMQVIGGNVL---- 380 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G--------------------~----~~~~l~~i~~i~~~~~-~vpvi~g~v~---- 380 (590)
+..+.+..+.++|.|.|.|+.++| . .++.++.++.+++..+ +.||.++=-.
T Consensus 144 ~f~~AA~~a~~aGfDgVEih~ahGYLl~qFlsp~~N~R~D~yGGslenR~rf~~eiv~aVr~avg~d~pv~vRls~~~~~ 223 (343)
T 3kru_A 144 AFGEAAKRANLAGYDVVEIHAAHGYLIHEFLSPLSNKRKDEYGNSIENRARFLIEVIDEVRKNWPENKPIFVRVSADDYM 223 (343)
T ss_dssp HHHHHHHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHTSCTTSCEEEEEECCCSS
T ss_pred HHHHHHhhccccCCceEEEecccchhHHHhhcccccccchhhccchHhHHHHHHHHHHHHHhcCCccCCeEEEeechhhh
Confidence 445567778889999999995432 1 1345788999999885 5688764211
Q ss_pred ----C----cHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcC
Q psy1056 381 ----F----GYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALG 452 (590)
Q Consensus 381 ----s----~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalG 452 (590)
+ .+-++.|.++ +|+|.++...+........-|+.......+++. .++|||+.|||.++.++.++|+.|
T Consensus 224 ~~g~~~~~~~~~a~~l~~~-vd~i~vs~g~~~~~~~~~~~~~~~~~~~~ir~~---~~iPVi~~Ggi~t~e~Ae~~l~~G 299 (343)
T 3kru_A 224 EGGINIDMMVEYINMIKDK-VDLIDVSSGGLLNVDINLYPGYQVKYAETIKKR---CNIKTSAVGLITTQELAEEILSNE 299 (343)
T ss_dssp TTSCCHHHHHHHHHHHTTT-CSEEEEECCCSSCCCCCCCTTTTHHHHHHHHHH---HTCEEEEESSCCCHHHHHHHHHTT
T ss_pred ccCccHHHHHHHHHHhhcc-ccEEeccCCceEeeeecccCceeehHHHHHHHh---cCcccceeeeeeHHHHHHHHHhch
Confidence 2 3446677779 999987432221100000112222223334433 359999999999999999999999
Q ss_pred -CCEEEECccccC
Q psy1056 453 -ASTAMMGSLLAG 464 (590)
Q Consensus 453 -A~~v~~g~~l~~ 464 (590)
||+|++|++|..
T Consensus 300 ~aD~V~iGR~~la 312 (343)
T 3kru_A 300 RADLVALGRELLR 312 (343)
T ss_dssp SCSEEEESHHHHH
T ss_pred hhHHHHHHHHHhc
Confidence 999999998853
|
| >3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family, OYE-like FMN-binding domain, TIM B oxidoreductase; HET: PGE; 1.65A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.98 E-value=6.3e-05 Score=79.64 Aligned_cols=133 Identities=16% Similarity=0.080 Sum_probs=87.2
Q ss_pred hHHHHHHHHHHcCCcEEEEecCC--------------------Cch-----hhHHHHHHHHHHhC-----CCceEEecc-
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQ--------------------GNS-----IYQIEMIKFIKKEY-----PDMQVIGGN- 378 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~--------------------G~~-----~~~l~~i~~i~~~~-----~~vpvi~g~- 378 (590)
+..+.+....++|.|.|.|+.++ |.. ++.++.++.+++.. ++.||.++=
T Consensus 171 ~F~~AA~rA~~AGfDgVEIH~ahGYLl~QFlSp~~N~RtD~yGGs~lenR~Rf~~evv~aVr~~v~~~~~~~f~v~vRis 250 (419)
T 3l5a_A 171 QYRDATLRAIKAGFDGVEISIAQRLLIQTFFSTFSNRRTDHYGADSLKNRARLCLEVMRAVQEVIDKEAPDNFILGFRAT 250 (419)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSTTCHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred HHHHHHHHHHHcCCCEEEECCccchHHHHccCCcccccccCCCCchhhhhhHHHHHHHHHHHHHHhhhcCCCeeEEEecc
Confidence 34456777889999999999754 211 34567888888765 356777541
Q ss_pred ---------ccC----cHHHHHHHH-CCCCEEEEccccccc---CCCccccccchhHHHHHHHHHhcCCCcEEecCCCCC
Q psy1056 379 ---------VLF----GYQPRATLL-NFIYQIEMIKFIKKE---YPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQS 441 (590)
Q Consensus 379 ---------v~s----~~~a~~l~~-~Gvd~i~v~~~~~~~---~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~ 441 (590)
..+ .+-++.|.+ +|+|+|.|+..+... .....+.+........+++... .++|||+.|||++
T Consensus 251 ~~~~~~~~~G~~~ed~~~la~~L~~~~Gvd~I~vs~g~~~~~~~~~~~~g~~~~~~~a~~Ik~~v~-~~iPVI~~GgI~t 329 (419)
T 3l5a_A 251 PEETRGSDLGYTIDEFNQLIDWVMDVSNIQYLAIASWGRHIYQNTSRTPGDHFGRPVNQIVYEHLA-GRIPLIASGGINS 329 (419)
T ss_dssp SCEEETTEEEECHHHHHHHHHHHHHHSCCCCEEECCTTCCGGGCBCCCSSTTTTSBHHHHHHHHHT-TSSCEEECSSCCS
T ss_pred cccccCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeeCCccccccccCCCCccccHHHHHHHHHHcC-CCCeEEEECCCCC
Confidence 112 345677888 999999885432100 0001111112223334554432 1499999999999
Q ss_pred HHHHHHHHHcCCCEEEECccccC
Q psy1056 442 VGHVMKALALGASTAMMGSLLAG 464 (590)
Q Consensus 442 ~~di~kalalGA~~v~~g~~l~~ 464 (590)
+.++.++|+. ||+|++|++|..
T Consensus 330 ~e~Ae~~L~~-aDlVaiGR~~Ia 351 (419)
T 3l5a_A 330 PESALDALQH-ADMVGMSSPFVT 351 (419)
T ss_dssp HHHHHHHGGG-CSEEEESTHHHH
T ss_pred HHHHHHHHHh-CCcHHHHHHHHH
Confidence 9999999999 999999998854
|
| >2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=2.6e-05 Score=81.53 Aligned_cols=128 Identities=11% Similarity=0.010 Sum_probs=85.4
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCc------------------------hhhHHHHHHHHHHhCCCceEEeccc------
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGN------------------------SIYQIEMIKFIKKEYPDMQVIGGNV------ 379 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~------------------------~~~~l~~i~~i~~~~~~vpvi~g~v------ 379 (590)
+..+.++.+.++|+|.|.|+.++|+ .+..++.++.+++..+.-||.++=-
T Consensus 167 ~f~~aA~~a~~aGfDgVEIh~a~GYLl~QFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~~~v~vrls~~~~~~ 246 (377)
T 2r14_A 167 DYRQAAQRAKRAGFDMVEVHAANACLPNQFLATGTNRRTDQYGGSIENRARFPLEVVDAVAEVFGPERVGIRLTPFLELF 246 (377)
T ss_dssp HHHHHHHHHHHHTCSEEEEEECTTCHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCCT
T ss_pred HHHHHHHHHHHcCCCEEEEcCcccchHHhccCCccccCCCccCcchhhchHHHHHHHHHHHHHcCCCcEEEEeccccccC
Confidence 4455677778899999999876531 1235788899998875237776511
Q ss_pred -----c----CcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHH
Q psy1056 380 -----L----FGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALA 450 (590)
Q Consensus 380 -----~----s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kala 450 (590)
. ..+-++.|.++|+|+|.++..+... ...+ .....+..+++ ..++|||+.||| ++.++.++|+
T Consensus 247 ~~~~~~~~~~~~~la~~le~~Gvd~i~v~~~~~~~--~~~~--~~~~~~~~ik~---~~~iPvi~~Ggi-~~~~a~~~l~ 318 (377)
T 2r14_A 247 GLTDDEPEAMAFYLAGELDRRGLAYLHFNEPDWIG--GDIT--YPEGFREQMRQ---RFKGGLIYCGNY-DAGRAQARLD 318 (377)
T ss_dssp TCCCSCHHHHHHHHHHHHHHTTCSEEEEECCC--------C--CCTTHHHHHHH---HCCSEEEEESSC-CHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCcccC--CCCc--chHHHHHHHHH---HCCCCEEEECCC-CHHHHHHHHH
Confidence 1 2233788889999999774322111 0000 01222333443 346999999999 7999999999
Q ss_pred cC-CCEEEECccccCC
Q psy1056 451 LG-ASTAMMGSLLAGT 465 (590)
Q Consensus 451 lG-A~~v~~g~~l~~~ 465 (590)
.| ||+|++|+.+..-
T Consensus 319 ~g~aD~V~igR~~l~~ 334 (377)
T 2r14_A 319 DNTADAVAFGRPFIAN 334 (377)
T ss_dssp TTSCSEEEESHHHHHC
T ss_pred CCCceEEeecHHHHhC
Confidence 98 9999999988643
|
| >2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A | Back alignment and structure |
|---|
Probab=97.95 E-value=4.2e-05 Score=77.75 Aligned_cols=134 Identities=14% Similarity=0.120 Sum_probs=82.4
Q ss_pred HHHHHHHHHHcCCcEEEEec--------CCCc-hhhHHHHHHHHHHhCCCceEEeccc-cCcHHHHHHHHCCCCEEEEcc
Q psy1056 331 DKNRLKLLSQAGVDVVILDS--------SQGN-SIYQIEMIKFIKKEYPDMQVIGGNV-LFGYQPRATLLNFIYQIEMIK 400 (590)
Q Consensus 331 ~~e~~~~li~~gad~i~V~~--------~~G~-~~~~l~~i~~i~~~~~~vpvi~g~v-~s~~~a~~l~~~Gvd~i~v~~ 400 (590)
..+.++.+.++|++.+++.. ..|. .....+.++.+++.. ++|++++.- +..+.++.+.++|||+|..+.
T Consensus 30 ~~~~a~~~~~~Ga~~I~~l~p~~~~~~~~~G~~~~~~~~~i~~I~~~~-~iPv~~k~r~g~~~~~~~~~a~GAd~V~~~~ 108 (305)
T 2nv1_A 30 NAEQAKIAEEAGAVAVMALERVPADIRAAGGVARMADPTIVEEVMNAV-SIPVMAKARIGHIVEARVLEAMGVDYIDESE 108 (305)
T ss_dssp SHHHHHHHHHTTCSEEEECCC-------CCCCCCCCCHHHHHHHHHHC-SSCEEEEECTTCHHHHHHHHHHTCSEEEECT
T ss_pred HHHHHHHHHHcCCCEEEEcCCCcchhhhccCcccCCCHHHHHHHHHhC-CCCEEecccccchHHHHHHHHCCCCEEEEec
Confidence 35778888899999994322 1121 111356777788777 789886542 236777788888888885310
Q ss_pred c----ccccC-C------------------------C-----cccc------------------------cc---ch---
Q psy1056 401 F----IKKEY-P------------------------D-----MQVI------------------------GR---NG--- 416 (590)
Q Consensus 401 ~----~~~~~-~------------------------~-----~~~~------------------------g~---~~--- 416 (590)
. ..+.. . | +.|| |+ ..
T Consensus 109 ~l~~~~~~~~i~~~~~g~~v~~~~~~~~e~~~a~~~Gad~V~~~G~~g~g~~~~~~~h~rt~~~~i~~l~gi~~~~~~~~ 188 (305)
T 2nv1_A 109 VLTPADEEFHLNKNEYTVPFVCGCRDLGEATRRIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQVRKVVAMSEDELMTE 188 (305)
T ss_dssp TSCCSCSSCCCCGGGCSSCEEEEESSHHHHHHHHHTTCSEEEECCCTTSCCTHHHHHHHHHHHHHHHHHHHSCGGGHHHH
T ss_pred cCCHHHHHHHHHHhccCCcEEEEeCCHHHHHHHHHCCCCEEEeccccCccchHHHHhhhhhhhccchhhccccchhhhcc
Confidence 0 00000 0 0 0011 00 00
Q ss_pred -----hHHHHHHHHHhcCCCcEE--ecCCCCCHHHHHHHHHcCCCEEEECccccCC
Q psy1056 417 -----TAVYRVAEYASRRGVPVI--ADGGVQSVGHVMKALALGASTAMMGSLLAGT 465 (590)
Q Consensus 417 -----~~l~~~~~~~~~~~v~ii--a~GGi~~~~di~kalalGA~~v~~g~~l~~~ 465 (590)
..+..+.+.....++|++ +.|||+|+.|+.+++.+|||+|++|+.|...
T Consensus 189 ~~~~~~~~~~i~~i~~~~~iPvi~~a~GGI~~~~d~~~~~~~GadgV~vGsai~~~ 244 (305)
T 2nv1_A 189 AKNLGAPYELLLQIKKDGKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKS 244 (305)
T ss_dssp HHHHTCCHHHHHHHHHHTSCSSCEEBCSCCCSHHHHHHHHHTTCSCEEECGGGGGS
T ss_pred cccccccHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHcCCCEEEEcHHHHcC
Confidence 011223333333468999 9999999999999999999999999998643
|
| >1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A | Back alignment and structure |
|---|
Probab=97.95 E-value=4.2e-05 Score=76.03 Aligned_cols=123 Identities=19% Similarity=0.122 Sum_probs=76.8
Q ss_pred HHHHHHHc-CCcEEEEecCCCch---hhHHHHHHHHHHhC-CCceEEeccccCcHHHHHHHHCCCCEEEEcc-cccccCC
Q psy1056 334 RLKLLSQA-GVDVVILDSSQGNS---IYQIEMIKFIKKEY-PDMQVIGGNVLFGYQPRATLLNFIYQIEMIK-FIKKEYP 407 (590)
Q Consensus 334 ~~~~li~~-gad~i~V~~~~G~~---~~~l~~i~~i~~~~-~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~-~~~~~~~ 407 (590)
.++.+.++ +.+.+.++..-..+ ....+.++..++.+ ++..++.-.+.+.+.++++.++|+|+| ++. ..+-
T Consensus 84 f~~~a~~agg~~~i~l~i~~d~~~~~~e~~~~~~~a~~~~~~g~~vi~~~~~~~~~a~~~~~~gad~v-~~~~~~~G--- 159 (264)
T 1xm3_A 84 IARLAKASGLCDMIKVEVIGCSRSLLPDPVETLKASEQLLEEGFIVLPYTSDDVVLARKLEELGVHAI-MPGASPIG--- 159 (264)
T ss_dssp HHHHHHHTTCCSSEEECCBCCTTTCCBCHHHHHHHHHHHHHTTCCEEEEECSCHHHHHHHHHHTCSCB-EECSSSTT---
T ss_pred HHHHHHHcCCCCeEEEeecCCCcccccchHHHHHHHHHHHCCCeEEEEEcCCCHHHHHHHHHhCCCEE-EECCcccC---
Confidence 45555565 45666554322111 22234444444432 234444334557889999999999998 321 1000
Q ss_pred Ccccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCC
Q psy1056 408 DMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGT 465 (590)
Q Consensus 408 ~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~ 465 (590)
++.+. +...+..+++ ..++|+++.|||+++.|+.+++++|||+|.+|+.|..+
T Consensus 160 --t~~~~~~~~~l~~i~~---~~~iPviv~gGI~t~eda~~~~~~GAdgViVGSAi~~a 213 (264)
T 1xm3_A 160 --SGQGILNPLNLSFIIE---QAKVPVIVDAGIGSPKDAAYAMELGADGVLLNTAVSGA 213 (264)
T ss_dssp --CCCCCSCHHHHHHHHH---HCSSCBEEESCCCSHHHHHHHHHTTCSEEEESHHHHTS
T ss_pred --CCCCCCCHHHHHHHHh---cCCCCEEEEeCCCCHHHHHHHHHcCCCEEEEcHHHhCC
Confidence 11233 4444545544 34699999999999999999999999999999998654
|
| >3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.95 E-value=4.9e-05 Score=74.48 Aligned_cols=115 Identities=17% Similarity=0.096 Sum_probs=73.4
Q ss_pred HHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcc-cccccCCCccccccch
Q psy1056 338 LSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIK-FIKKEYPDMQVIGRNG 416 (590)
Q Consensus 338 li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~-~~~~~~~~~~~~g~~~ 416 (590)
..+.|+|.+++....-. ...+++.++.-.++--.+.|.++++++.+.|+|+|-++. ..+..+++.... .
T Consensus 108 A~~~gAdGVHLg~~dl~-------~~~~r~~~~~~~~iG~S~ht~~Ea~~A~~~GaDyI~vgpvf~T~tK~~~~~~--g- 177 (243)
T 3o63_A 108 ARAAGADVLHLGQRDLP-------VNVARQILAPDTLIGRSTHDPDQVAAAAAGDADYFCVGPCWPTPTKPGRAAP--G- 177 (243)
T ss_dssp HHHHTCSEEEECTTSSC-------HHHHHHHSCTTCEEEEEECSHHHHHHHHHSSCSEEEECCSSCCCC-----CC--C-
T ss_pred HHHhCCCEEEecCCcCC-------HHHHHHhhCCCCEEEEeCCCHHHHHHHhhCCCCEEEEcCccCCCCCCCcchh--h-
Confidence 44568888877433221 233445443333444477899999999999999997632 222221111111 2
Q ss_pred hHHHHHHHHHhc--CCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCC
Q psy1056 417 TAVYRVAEYASR--RGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGT 465 (590)
Q Consensus 417 ~~l~~~~~~~~~--~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~ 465 (590)
+..++.++.. .++|++|.||| |+.++..+++.||++|.+|+.|..+
T Consensus 178 --l~~l~~~~~~~~~~iPvvAiGGI-~~~ni~~~~~aGa~gvav~sai~~a 225 (243)
T 3o63_A 178 --LGLVRVAAELGGDDKPWFAIGGI-NAQRLPAVLDAGARRIVVVRAITSA 225 (243)
T ss_dssp --HHHHHHHHTC---CCCEEEESSC-CTTTHHHHHHTTCCCEEESHHHHTC
T ss_pred --HHHHHHHHHhccCCCCEEEecCC-CHHHHHHHHHcCCCEEEEeHHHhCC
Confidence 2233333332 36999999999 9999999999999999999988654
|
| >4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} | Back alignment and structure |
|---|
Probab=97.92 E-value=3e-05 Score=75.13 Aligned_cols=110 Identities=14% Similarity=0.152 Sum_probs=80.0
Q ss_pred HHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccc
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQV 411 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~ 411 (590)
.+.++..+++|+++++. ++ .. .+.++..++. ++|++.| +.|+.++.++.++|+|++++-+... . |
T Consensus 96 ~~~a~~Ai~AGA~fIvs--P~-~~---~~vi~~~~~~--gi~~ipG-v~TptEi~~A~~~Gad~vK~FPa~~-----~-g 160 (232)
T 4e38_A 96 GEQALAAKEAGATFVVS--PG-FN---PNTVRACQEI--GIDIVPG-VNNPSTVEAALEMGLTTLKFFPAEA-----S-G 160 (232)
T ss_dssp HHHHHHHHHHTCSEEEC--SS-CC---HHHHHHHHHH--TCEEECE-ECSHHHHHHHHHTTCCEEEECSTTT-----T-T
T ss_pred HHHHHHHHHcCCCEEEe--CC-CC---HHHHHHHHHc--CCCEEcC-CCCHHHHHHHHHcCCCEEEECcCcc-----c-c
Confidence 57788899999999973 32 22 4556666665 7898884 8899999999999999996622111 0 0
Q ss_pred cccchhHHHHHHHHHhcC-CCcEEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 412 IGRNGTAVYRVAEYASRR-GVPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 412 ~g~~~~~l~~~~~~~~~~-~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
| +.-+ ....... ++|+++.||| ++..+...|++||.+++.|+.+.
T Consensus 161 -G--~~~l---kal~~p~p~ip~~ptGGI-~~~n~~~~l~aGa~~~vgGs~l~ 206 (232)
T 4e38_A 161 -G--ISMV---KSLVGPYGDIRLMPTGGI-TPSNIDNYLAIPQVLACGGTWMV 206 (232)
T ss_dssp -H--HHHH---HHHHTTCTTCEEEEBSSC-CTTTHHHHHTSTTBCCEEECGGG
T ss_pred -C--HHHH---HHHHHHhcCCCeeeEcCC-CHHHHHHHHHCCCeEEEECchhc
Confidence 1 1222 3232222 5999999999 58999999999999999999885
|
| >1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=5e-05 Score=79.42 Aligned_cols=128 Identities=14% Similarity=0.058 Sum_probs=85.8
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCc------------------------hhhHHHHHHHHHHhCCCceEEecccc-----
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGN------------------------SIYQIEMIKFIKKEYPDMQVIGGNVL----- 380 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~------------------------~~~~l~~i~~i~~~~~~vpvi~g~v~----- 380 (590)
+..+.++.+.++|.|.|.|+.++|+ .+..++.++.+++..++-||.++--.
T Consensus 168 ~f~~AA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~~~V~vrls~~~~~~ 247 (376)
T 1icp_A 168 EFRVAARNAIEAGFDGVEIHGAHGYLIDQFMKDQVNDRSDKYGGSLENRCRFALEIVEAVANEIGSDRVGIRISPFAHYN 247 (376)
T ss_dssp HHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCTT
T ss_pred HHHHHHHHHHHcCCCEEEEcCccchhhhhccCCcccCCCCccCccHHHhHHHHHHHHHHHHHHhcCCceEEEeccccccC
Confidence 4456777888999999999986542 12357888999988752277754211
Q ss_pred ----------CcHHHHHHHHCCCCEEEEcccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHH
Q psy1056 381 ----------FGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKAL 449 (590)
Q Consensus 381 ----------s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kal 449 (590)
..+-++.|.++|+|+|.++..+... ... +. ....+..+++ ..++|||+.||| ++.++.++|
T Consensus 248 g~~~~~~~~~~~~la~~le~~Gvd~i~v~~~~~~~--~~~--~~~~~~~~~~vr~---~~~iPvi~~G~i-~~~~a~~~l 319 (376)
T 1icp_A 248 EAGDTNPTALGLYMVESLNKYDLAYCHVVEPRMKT--AWE--KIECTESLVPMRK---AYKGTFIVAGGY-DREDGNRAL 319 (376)
T ss_dssp TCCCSCHHHHHHHHHHHHGGGCCSEEEEECCSCCC----------CCCCSHHHHH---HCCSCEEEESSC-CHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCcccC--CCC--ccccHHHHHHHHH---HcCCCEEEeCCC-CHHHHHHHH
Confidence 1345677888999999774322111 000 11 1112233443 346899999999 999999999
Q ss_pred HcC-CCEEEECccccCC
Q psy1056 450 ALG-ASTAMMGSLLAGT 465 (590)
Q Consensus 450 alG-A~~v~~g~~l~~~ 465 (590)
+.| ||+|++|++|..-
T Consensus 320 ~~g~aD~V~~gR~~l~~ 336 (376)
T 1icp_A 320 IEDRADLVAYGRLFISN 336 (376)
T ss_dssp HTTSCSEEEESHHHHHC
T ss_pred HCCCCcEEeecHHHHhC
Confidence 998 9999999988643
|
| >1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A | Back alignment and structure |
|---|
Probab=97.88 E-value=1.7e-05 Score=77.68 Aligned_cols=176 Identities=13% Similarity=0.080 Sum_probs=96.5
Q ss_pred CHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCCCCCCcccCCceEEeEeeccchhHHHHHHHHHHcCCcEEE
Q psy1056 268 SLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVVI 347 (590)
Q Consensus 268 ~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~gad~i~ 347 (590)
...+..+.+.+.+.+.+-+.|.+..--+--...++++... ...-.+.+...+ ...+.++.+++.|++.++
T Consensus 31 ~~~~~a~~~~~~Gad~i~v~d~~~~~~~~~~~~~~i~~i~------~~~ipvi~~Ggi----~~~~~~~~~~~~Gad~V~ 100 (241)
T 1qo2_A 31 DPVELVEKLIEEGFTLIHVVDLSNAIENSGENLPVLEKLS------EFAEHIQIGGGI----RSLDYAEKLRKLGYRRQI 100 (241)
T ss_dssp CHHHHHHHHHHTTCCCEEEEEHHHHHHCCCTTHHHHHHGG------GGGGGEEEESSC----CSHHHHHHHHHTTCCEEE
T ss_pred CHHHHHHHHHHcCCCEEEEecccccccCCchhHHHHHHHH------hcCCcEEEECCC----CCHHHHHHHHHCCCCEEE
Confidence 4566777788888888877653210000000111122111 011223332222 223456667788999988
Q ss_pred EecCC-CchhhHHHHHHHHHHhCCCceEEeccc---------------cC-cHHHHHHHHCCCCEEEEcccccccCCCcc
Q psy1056 348 LDSSQ-GNSIYQIEMIKFIKKEYPDMQVIGGNV---------------LF-GYQPRATLLNFIYQIEMIKFIKKEYPDMQ 410 (590)
Q Consensus 348 V~~~~-G~~~~~l~~i~~i~~~~~~vpvi~g~v---------------~s-~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~ 410 (590)
+-... .++ +.+..+ +.+++..++.-.+ .+ .+-++++.++|+++|.+ +.+..++ .
T Consensus 101 lg~~~l~~p----~~~~~~-~~~g~~i~~~~d~~~~~v~~~g~~~~~~~~~~e~~~~~~~~G~~~i~~---t~~~~~g-~ 171 (241)
T 1qo2_A 101 VSSKVLEDP----SFLKSL-REIDVEPVFSLDTRGGRVAFKGWLAEEEIDPVSLLKRLKEYGLEEIVH---TEIEKDG-T 171 (241)
T ss_dssp ECHHHHHCT----THHHHH-HTTTCEEEEEEEEETTEECCTTCSSCSCCCHHHHHHHHHTTTCCEEEE---EETTHHH-H
T ss_pred ECchHhhCh----HHHHHH-HHcCCcEEEEEEecCCEEEECCceecCCCCHHHHHHHHHhCCCCEEEE---Eeecccc-c
Confidence 74321 111 234555 5553221121122 13 34578899999998844 2221000 0
Q ss_pred ccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHc-----C-CCEEEECccccCC
Q psy1056 411 VIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALAL-----G-ASTAMMGSLLAGT 465 (590)
Q Consensus 411 ~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalal-----G-A~~v~~g~~l~~~ 465 (590)
..|...+.+.++++. .++|+|++|||+++.|+.+++.+ | ||+|++|+.|...
T Consensus 172 ~~g~~~~~i~~l~~~---~~iPvia~GGI~~~~d~~~~~~~~~~~~G~adgv~vgsal~~~ 229 (241)
T 1qo2_A 172 LQEHDFSLTKKIAIE---AEVKVLAAGGISSENSLKTAQKVHTETNGLLKGVIVGRAFLEG 229 (241)
T ss_dssp TCCCCHHHHHHHHHH---HTCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEEEECHHHHTT
T ss_pred CCcCCHHHHHHHHHh---cCCcEEEECCCCCHHHHHHHHhcccccCCeEeEEEeeHHHHcC
Confidence 012233344444443 36999999999999999999999 9 9999999998544
|
| >3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0 | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00011 Score=76.12 Aligned_cols=121 Identities=18% Similarity=0.152 Sum_probs=85.5
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCc------------------------hhhHHHHHHHHHHhCCCceEEecccc-----
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGN------------------------SIYQIEMIKFIKKEYPDMQVIGGNVL----- 380 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~------------------------~~~~l~~i~~i~~~~~~vpvi~g~v~----- 380 (590)
+..+.+..+.++|.|.|.|+.++|+ .++.++.++.+++..++-||.++=-.
T Consensus 162 ~f~~AA~~A~~aGfDgVEih~a~GYLl~QFLsp~~N~RtD~yGGslenR~rf~~evv~aVr~~vg~~~v~vRls~~~~~~ 241 (361)
T 3gka_A 162 AFRRGAENARAAGFDGVEVHGANGYLLDQFLQDSANRRTDAYGGSIENRARLLLEVVDAAIDVWSAARVGVHLAPRGDAH 241 (361)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHSHHHHHHHHHHHHHHCGGGEEEEECTTCCSS
T ss_pred HHHHHHHHHHHcCCCEEEECCcCccHHHhccCcccccccCCCCCChhhcHHHHHHHHHHHHHHcCCCeEEEecccccccC
Confidence 3445677788999999999976521 13457889999988753377764111
Q ss_pred ----------CcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHH
Q psy1056 381 ----------FGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALA 450 (590)
Q Consensus 381 ----------s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kala 450 (590)
..+-++.|.++|+|+|.|+..+ . |. ..+..+++.. ++|||+.||+ ++.++.++|+
T Consensus 242 g~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~--~-------~~--~~~~~ik~~~---~iPvi~~Ggi-t~e~a~~~l~ 306 (361)
T 3gka_A 242 TMGDSDPAATFGHVARELGRRRIAFLFARESF--G-------GD--AIGQQLKAAF---GGPFIVNENF-TLDSAQAALD 306 (361)
T ss_dssp SCCCSCHHHHHHHHHHHHHHTTCSEEEEECCC--S-------TT--CCHHHHHHHH---CSCEEEESSC-CHHHHHHHHH
T ss_pred CCCCCCcHHHHHHHHHHHHHcCCCEEEECCCC--C-------CH--HHHHHHHHHc---CCCEEEeCCC-CHHHHHHHHH
Confidence 1334677888999999774322 1 11 1233444443 5899999999 9999999999
Q ss_pred cC-CCEEEECccccCC
Q psy1056 451 LG-ASTAMMGSLLAGT 465 (590)
Q Consensus 451 lG-A~~v~~g~~l~~~ 465 (590)
.| ||+|++|++|..-
T Consensus 307 ~G~aD~V~iGR~~lad 322 (361)
T 3gka_A 307 AGQADAVAWGKLFIAN 322 (361)
T ss_dssp TTSCSEEEESHHHHHC
T ss_pred cCCccEEEECHHhHhC
Confidence 98 9999999988543
|
| >4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00012 Score=75.93 Aligned_cols=121 Identities=19% Similarity=0.098 Sum_probs=85.1
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCc------------------------hhhHHHHHHHHHHhCCCceEEecccc-----
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGN------------------------SIYQIEMIKFIKKEYPDMQVIGGNVL----- 380 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~------------------------~~~~l~~i~~i~~~~~~vpvi~g~v~----- 380 (590)
+..+.+..+.++|.|.|.|+.++|+ .++.++.++.+++.++.-||.++--.
T Consensus 154 ~f~~AA~~a~~aGfDgVEih~a~GYLl~QFLSp~~N~RtD~yGGslenR~rf~~eiv~aVr~~vg~~~v~vRls~~~~~~ 233 (362)
T 4ab4_A 154 AYRSGAENAKAAGFDGVEIHGANGYLLDQFLQSSTNQRTDRYGGSLENRARLLLEVTDAAIEVWGAQRVGVHLAPRADAH 233 (362)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCSS
T ss_pred HHHHHHHHHHHcCCCEEEECCcCccHHHhhcCCccccccCCCCCchhhHHHHHHHHHHHHHHhcCCCceEEEeecccccc
Confidence 3445677788899999999976521 13457888999988753377754211
Q ss_pred ----------CcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHH
Q psy1056 381 ----------FGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALA 450 (590)
Q Consensus 381 ----------s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kala 450 (590)
..+-++.|.++|+|+|.|+..+ . |. ..+..+++.. ++|||+.||+ ++.++.++|+
T Consensus 234 g~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~--~-------~~--~~~~~ik~~~---~iPvi~~Ggi-t~e~a~~~l~ 298 (362)
T 4ab4_A 234 DMGDADRAETFTYVARELGKRGIAFICSRERE--A-------DD--SIGPLIKEAF---GGPYIVNERF-DKASANAALA 298 (362)
T ss_dssp SCCCTTHHHHHHHHHHHHHHTTCSEEEEECCC--C-------TT--CCHHHHHHHH---CSCEEEESSC-CHHHHHHHHH
T ss_pred ccCCCCcHHHHHHHHHHHHHhCCCEEEECCCC--C-------CH--HHHHHHHHHC---CCCEEEeCCC-CHHHHHHHHH
Confidence 1233678888999999775322 1 11 1233444443 5899999999 9999999999
Q ss_pred cC-CCEEEECccccCC
Q psy1056 451 LG-ASTAMMGSLLAGT 465 (590)
Q Consensus 451 lG-A~~v~~g~~l~~~ 465 (590)
.| ||+|++|+++..-
T Consensus 299 ~g~aD~V~iGR~~lan 314 (362)
T 4ab4_A 299 SGKADAVAFGVPFIAN 314 (362)
T ss_dssp TTSCSEEEESHHHHHC
T ss_pred cCCccEEEECHHhHhC
Confidence 98 9999999988543
|
| >2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00011 Score=70.73 Aligned_cols=181 Identities=17% Similarity=0.123 Sum_probs=103.0
Q ss_pred CCHHHHHHHHHhcCCCcceEEcCCCceEEEEee-cccccccCCCCCCcccCCceEEeEeeccchhHHHHHHHHHHcCCcE
Q psy1056 267 ISLEEANVILEKSKKGKLPILNDKGELIALIAR-TDLKKSRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDV 345 (590)
Q Consensus 267 ~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~-~dll~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~gad~ 345 (590)
.++.++++.+.+.+.+.+=+..-+|.+...++. -++++...... ...+.+..-+.... +.++.+.+.|++.
T Consensus 16 ~~~~~~~~~~~~~G~~~i~~~~~dg~~~~~~~~g~~~i~~i~~~~-----~~~~~v~l~v~d~~---~~i~~~~~~gad~ 87 (220)
T 2fli_A 16 ANFASELARIEETDAEYVHIDIMDGQFVPNISFGADVVASMRKHS-----KLVFDCHLMVVDPE---RYVEAFAQAGADI 87 (220)
T ss_dssp GGHHHHHHHHHHTTCCEEEEEEEBSSSSSCBCBCHHHHHHHHTTC-----CSEEEEEEESSSGG---GGHHHHHHHTCSE
T ss_pred HHHHHHHHHHHHcCCCEEEEEeecCCCCCccccCHHHHHHHHHhC-----CCCEEEEEeecCHH---HHHHHHHHcCCCE
Confidence 567888899988888775443323443333332 23333222110 11233333333221 2347778899999
Q ss_pred EEEecCCCchhhHHHHHHHHHHhCCCceEEec-cccCcHHHHHHHHCCCCEEEE-cccccccCCCcccc--cc-chhHHH
Q psy1056 346 VILDSSQGNSIYQIEMIKFIKKEYPDMQVIGG-NVLFGYQPRATLLNFIYQIEM-IKFIKKEYPDMQVI--GR-NGTAVY 420 (590)
Q Consensus 346 i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g-~v~s~~~a~~l~~~Gvd~i~v-~~~~~~~~~~~~~~--g~-~~~~l~ 420 (590)
++++...+. .....++.+++. +.++++. +..+..+..+....++|+|.+ +...+ ++|. ++ ....+.
T Consensus 88 v~vh~~~~~--~~~~~~~~~~~~--g~~i~~~~~~~t~~e~~~~~~~~~d~vl~~~~~~g-----~~g~~~~~~~~~~i~ 158 (220)
T 2fli_A 88 MTIHTESTR--HIHGALQKIKAA--GMKAGVVINPGTPATALEPLLDLVDQVLIMTVNPG-----FGGQAFIPECLEKVA 158 (220)
T ss_dssp EEEEGGGCS--CHHHHHHHHHHT--TSEEEEEECTTSCGGGGGGGTTTCSEEEEESSCTT-----CSSCCCCGGGHHHHH
T ss_pred EEEccCccc--cHHHHHHHHHHc--CCcEEEEEcCCCCHHHHHHHHhhCCEEEEEEECCC-----CcccccCHHHHHHHH
Confidence 999876552 234555666554 4444331 224554444444567998843 22211 2221 22 222344
Q ss_pred HHHHHHhcC--CCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCC
Q psy1056 421 RVAEYASRR--GVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGT 465 (590)
Q Consensus 421 ~~~~~~~~~--~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~ 465 (590)
.+++.+... ++|++++|||+ +.++.+++.+|||++.+|+.+...
T Consensus 159 ~~~~~~~~~~~~~~i~v~GGI~-~~~~~~~~~~Gad~vvvGsai~~~ 204 (220)
T 2fli_A 159 TVAKWRDEKGLSFDIEVDGGVD-NKTIRACYEAGANVFVAGSYLFKA 204 (220)
T ss_dssp HHHHHHHHTTCCCEEEEESSCC-TTTHHHHHHHTCCEEEESHHHHTS
T ss_pred HHHHHHHhcCCCceEEEECcCC-HHHHHHHHHcCCCEEEEChHHhCC
Confidence 455544322 58999999998 889999999999999999998543
|
| >4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ... | Back alignment and structure |
|---|
Probab=97.86 E-value=8.9e-05 Score=72.05 Aligned_cols=122 Identities=14% Similarity=0.091 Sum_probs=80.4
Q ss_pred HHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCcccccc
Q psy1056 335 LKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGR 414 (590)
Q Consensus 335 ~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~ 414 (590)
+......|+|++.+-.+-=.... +..+..+...+ ++.+++ +|-+.++..++.++|++.|-| +.|. +..+-.
T Consensus 119 I~eAr~~GADaILLI~a~L~~~~-l~~l~~~A~~l-Gl~~Lv-EVh~~~El~rAl~~~a~iIGI---NNRn---L~tf~v 189 (258)
T 4a29_A 119 IDDAYNLGADTVLLIVKILTERE-LESLLEYARSY-GMEPLI-LINDENDLDIALRIGARFIGI---MSRD---FETGEI 189 (258)
T ss_dssp HHHHHHHTCSEEEEEGGGSCHHH-HHHHHHHHHHT-TCCCEE-EESSHHHHHHHHHTTCSEEEE---CSBC---TTTCCB
T ss_pred HHHHHHcCCCeeehHHhhcCHHH-HHHHHHHHHHH-hHHHHH-hcchHHHHHHHhcCCCcEEEE---eCCC---cccccc
Confidence 34455679999876554322222 33333444444 565555 999999999999999998833 3343 222222
Q ss_pred chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCCC
Q psy1056 415 NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTS 466 (590)
Q Consensus 415 ~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~~ 466 (590)
.......++.... .++.+|+.+||+++.|+.+....|++++.+|..|+.+.
T Consensus 190 dl~~t~~L~~~ip-~~~~~VsESGI~t~~dv~~l~~~G~~a~LVGealmr~~ 240 (258)
T 4a29_A 190 NKENQRKLISMIP-SNVVKVAKLGISERNEIEELRKLGVNAFLISSSLMRNP 240 (258)
T ss_dssp CHHHHHHHHTTSC-TTSEEEEEESSCCHHHHHHHHHTTCCEEEECHHHHHCT
T ss_pred CHHHHHHHHhhCC-CCCEEEEcCCCCCHHHHHHHHHCCCCEEEECHHHhCCC
Confidence 2222223333222 25889999999999999999999999999999997543
|
| >1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=7.4e-05 Score=74.41 Aligned_cols=130 Identities=14% Similarity=0.029 Sum_probs=81.5
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCc--------------------h-hhHHHHHHHHHHhCCCceEEe---cc-c---cC
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGN--------------------S-IYQIEMIKFIKKEYPDMQVIG---GN-V---LF 381 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~--------------------~-~~~l~~i~~i~~~~~~vpvi~---g~-v---~s 381 (590)
...+.++.+.++ +|++.+..+..+ + ..+++.++.+++. +++|+++ -| + +.
T Consensus 31 ~~~~~~~~l~~~-aD~IElG~PfsdP~adGp~Iq~a~~~Al~~G~~~~~~~~~v~~ir~~-~~~Pii~m~y~n~v~~~g~ 108 (271)
T 1ujp_A 31 GFLQAVEEVLPY-ADLLEIGLPYSDPLGDGPVIQRASELALRKGMSVQGALELVREVRAL-TEKPLFLMTYLNPVLAWGP 108 (271)
T ss_dssp HHHHHHHHHGGG-CSSEEEECCCCC----CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-CCSCEEEECCHHHHHHHCH
T ss_pred HHHHHHHHHHhc-CCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc-CCCCEEEEecCcHHHHhhH
Confidence 345677778888 999998764322 1 3356789999988 4789886 13 2 23
Q ss_pred cHHHHHHHHCCCCEEEE---c-----------------------cccccc--------CCCcc------c-ccc-c--hh
Q psy1056 382 GYQPRATLLNFIYQIEM---I-----------------------KFIKKE--------YPDMQ------V-IGR-N--GT 417 (590)
Q Consensus 382 ~~~a~~l~~~Gvd~i~v---~-----------------------~~~~~~--------~~~~~------~-~g~-~--~~ 417 (590)
...++.+.++|+|++.+ . .+++.. ..||. | .|. + ..
T Consensus 109 ~~f~~~~~~aG~dGviv~Dl~~ee~~~~~~~~~~~gl~~i~liap~s~~eri~~ia~~~~gfiy~vs~~G~TG~~~~~~~ 188 (271)
T 1ujp_A 109 ERFFGLFKQAGATGVILPDLPPDEDPGLVRLAQEIGLETVFLLAPTSTDARIATVVRHATGFVYAVSVTGVTGMRERLPE 188 (271)
T ss_dssp HHHHHHHHHHTCCEEECTTCCGGGCHHHHHHHHHHTCEEECEECTTCCHHHHHHHHTTCCSCEEEECC------------
T ss_pred HHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHHcCCceEEEeCCCCCHHHHHHHHHhCCCCEEEEecCcccCCCCCCCc
Confidence 55677899999998865 0 111100 00111 0 121 1 11
Q ss_pred HH-HHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 418 AV-YRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 418 ~l-~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
.+ ..+.+..+..++|+++.|||+|+.++.++ .|||+|++|+.|.
T Consensus 189 ~~~~~v~~vr~~~~~Pv~vGfGI~t~e~a~~~--~~ADgVIVGSAi~ 233 (271)
T 1ujp_A 189 EVKDLVRRIKARTALPVAVGFGVSGKATAAQA--AVADGVVVGSALV 233 (271)
T ss_dssp CCHHHHHHHHTTCCSCEEEESCCCSHHHHHHH--TTSSEEEECHHHH
T ss_pred cHHHHHHHHHhhcCCCEEEEcCCCCHHHHHHh--cCCCEEEEChHHh
Confidence 11 12333333347999999999999999985 9999999999984
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00014 Score=82.15 Aligned_cols=134 Identities=14% Similarity=0.109 Sum_probs=88.4
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCc------------------------hhhHHHHHHHHHHhCC-CceEEec----c--
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGN------------------------SIYQIEMIKFIKKEYP-DMQVIGG----N-- 378 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~------------------------~~~~l~~i~~i~~~~~-~vpvi~g----~-- 378 (590)
...+.+..+.++|.|.+.++.++|+ .+...+.++.+++..+ +.|+.++ +
T Consensus 142 ~~~~aA~~a~~aGfd~veih~~~gyl~~qFlsp~~n~r~d~yGgs~~~r~r~~~eiv~avr~~vG~~~~v~vrls~~~~~ 221 (671)
T 1ps9_A 142 NFARCAQLAREAGYDGVEVMGSEGYLINEFLTLRTNQRSDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSMLDLV 221 (671)
T ss_dssp HHHHHHHHHHHTTCSEEEEEECBTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEEECCS
T ss_pred HHHHHHHHHHHcCCCEEEEccccchHHHHhCCCccCCCcCcCCCcHHHHHHHHHHHHHHHHHHcCCCceEEEEECccccC
Confidence 3445677788999999999876532 1335788889998773 6787652 1
Q ss_pred --ccCc----HHHHHHHHCCCCEEEEcccccccC-CCcc-ccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHH
Q psy1056 379 --VLFG----YQPRATLLNFIYQIEMIKFIKKEY-PDMQ-VIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALA 450 (590)
Q Consensus 379 --v~s~----~~a~~l~~~Gvd~i~v~~~~~~~~-~~~~-~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kala 450 (590)
..+. +-++.|.++|+|+|.++..+.... +... ..+ ....+..+....+..++|||+.|||.++.++.++++
T Consensus 222 ~~g~~~~~~~~~a~~l~~~g~d~i~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~iPvi~~Ggi~~~~~a~~~l~ 300 (671)
T 1ps9_A 222 EDGGTFAETVELAQAIEAAGATIINTGIGWHEARIPTIATPVP-RGAFSWVTRKLKGHVSLPLVTTNRINDPQVADDILS 300 (671)
T ss_dssp TTCCCHHHHHHHHHHHHHHTCSEEEEEECBTTCSSCSSSTTSC-TTTTHHHHHHHTTSCSSCEEECSSCCSHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEcCCCccccccccccccCC-cchHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH
Confidence 1233 446778889999998753221110 0000 001 111122233333445799999999999999999999
Q ss_pred cC-CCEEEECccccC
Q psy1056 451 LG-ASTAMMGSLLAG 464 (590)
Q Consensus 451 lG-A~~v~~g~~l~~ 464 (590)
.| ||+|++|++|..
T Consensus 301 ~g~aD~V~~gR~~l~ 315 (671)
T 1ps9_A 301 RGDADMVSMARPFLA 315 (671)
T ss_dssp TTSCSEEEESTHHHH
T ss_pred cCCCCEEEeCHHHHh
Confidence 99 999999998864
|
| >2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein, jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A {Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A* 3hgo_A* 1q45_A* 2g5w_A* 2q3o_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00014 Score=76.65 Aligned_cols=134 Identities=13% Similarity=0.068 Sum_probs=86.8
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCC--------------------c----hhhHHHHHHHHHHhCCCceEEeccc------
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQG--------------------N----SIYQIEMIKFIKKEYPDMQVIGGNV------ 379 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G--------------------~----~~~~l~~i~~i~~~~~~vpvi~g~v------ 379 (590)
...+.+..+.++|.|.|.|+.++| . .+..++.++.+++..++.||.++=-
T Consensus 172 ~f~~AA~~a~~AGfDgVEIh~ahGYLl~QFLsp~~N~RtD~yGGslenR~rf~~Eiv~aVr~avg~~~V~vRls~~~~~~ 251 (402)
T 2hsa_B 172 DYRRSALNAIEAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSLANRCKFITQVVQAVVSAIGADRVGVRVSPAIDHL 251 (402)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECSSCCST
T ss_pred HHHHHHHHHHHcCCCEEEECCccchHHHhccCCccCccCCccCcChhhhhHHHHHHHHHHHHHhCCCcEEEEeccccccC
Confidence 445567788899999999997542 1 1335788899998875347776511
Q ss_pred --c-------CcHHHHHHHHCC------CCEEEEcccccccCCCcccccc--ch-hHHHHHHHHHhcCCCcEEecCCCCC
Q psy1056 380 --L-------FGYQPRATLLNF------IYQIEMIKFIKKEYPDMQVIGR--NG-TAVYRVAEYASRRGVPVIADGGVQS 441 (590)
Q Consensus 380 --~-------s~~~a~~l~~~G------vd~i~v~~~~~~~~~~~~~~g~--~~-~~l~~~~~~~~~~~v~iia~GGi~~ 441 (590)
. ..+-++.|.++| +|+|.|+..+.... ....... .. ..+..+....+..++|||+.||| +
T Consensus 252 g~~~~~~~~~~~~la~~le~~G~~gg~~vd~i~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~vk~~~~iPvi~~G~i-~ 329 (402)
T 2hsa_B 252 DAMDSNPLSLGLAVVERLNKIQLHSGSKLAYLHVTQPRYVAY-GQTEAGRLGSEEEEARLMRTLRNAYQGTFICSGGY-T 329 (402)
T ss_dssp TCCCSCHHHHHHHHHHHHHHHHHHHTSCCSEEEEECCCCCTT-TTSSSTTTTHHHHHHHHHHHHHHHCSSCEEEESSC-C
T ss_pred CCCCCCCHHHHHHHHHHHHhcCCccCCceEEEEEecCccccc-cCCccccccCCcchHHHHHHHHHHCCCCEEEeCCC-C
Confidence 0 234567888899 99998743221100 0000000 01 11122223333457999999999 9
Q ss_pred HHHHHHHHHcC-CCEEEECccccCC
Q psy1056 442 VGHVMKALALG-ASTAMMGSLLAGT 465 (590)
Q Consensus 442 ~~di~kalalG-A~~v~~g~~l~~~ 465 (590)
+.++.++|+.| ||+|++|++|..-
T Consensus 330 ~~~a~~~l~~g~aD~V~igR~~l~d 354 (402)
T 2hsa_B 330 RELGIEAVAQGDADLVSYGRLFISN 354 (402)
T ss_dssp HHHHHHHHHTTSCSEEEESHHHHHC
T ss_pred HHHHHHHHHCCCCceeeecHHHHhC
Confidence 99999999998 9999999988654
|
| >2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00011 Score=73.22 Aligned_cols=118 Identities=13% Similarity=0.072 Sum_probs=73.9
Q ss_pred HHHHHHHHHcCCcEE--EEecCCCchhhHHHHHHH---HHHhCCCceEEeccc---------cCc---HHH-HHHHHCCC
Q psy1056 332 KNRLKLLSQAGVDVV--ILDSSQGNSIYQIEMIKF---IKKEYPDMQVIGGNV---------LFG---YQP-RATLLNFI 393 (590)
Q Consensus 332 ~e~~~~li~~gad~i--~V~~~~G~~~~~l~~i~~---i~~~~~~vpvi~g~v---------~s~---~~a-~~l~~~Gv 393 (590)
.+.++..++.|++.+ .+..........++.++. +.+.+ ++|+++... .+. +.+ +.+.++|+
T Consensus 102 ~~~v~~a~~~Ga~~v~~~l~~~~~~~~~~~~~~~~v~~~~~~~-g~~viv~~~~~G~~l~~~~~~~~~~~~a~~a~~~Ga 180 (273)
T 2qjg_A 102 VTTVEEAIRMGADAVSIHVNVGSDEDWEAYRDLGMIAETCEYW-GMPLIAMMYPRGKHIQNERDPELVAHAARLGAELGA 180 (273)
T ss_dssp CSCHHHHHHTTCSEEEEEEEETSTTHHHHHHHHHHHHHHHHHH-TCCEEEEEEECSTTCSCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCEEEEEEecCCCCHHHHHHHHHHHHHHHHHc-CCCEEEEeCCCCcccCCCCCHhHHHHHHHHHHHcCC
Confidence 455677888999999 544433333323333333 22334 677776420 233 344 77889999
Q ss_pred CEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCC--HHH----HHHHHHcCCCEEEECccccCC
Q psy1056 394 YQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQS--VGH----VMKALALGASTAMMGSLLAGT 465 (590)
Q Consensus 394 d~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~--~~d----i~kalalGA~~v~~g~~l~~~ 465 (590)
|+|.++.. . ....+.++. ...++|+++.|||.+ ..| +.+++..||++|.+|+.+...
T Consensus 181 d~i~~~~~---~---------~~~~l~~i~---~~~~ipvva~GGi~~~~~~~~~~~~~~~~~~Ga~gv~vg~~i~~~ 243 (273)
T 2qjg_A 181 DIVKTSYT---G---------DIDSFRDVV---KGCPAPVVVAGGPKTNTDEEFLQMIKDAMEAGAAGVAVGRNIFQH 243 (273)
T ss_dssp SEEEECCC---S---------SHHHHHHHH---HHCSSCEEEECCSCCSSHHHHHHHHHHHHHHTCSEEECCHHHHTS
T ss_pred CEEEECCC---C---------CHHHHHHHH---HhCCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEeeHHhhCC
Confidence 99955421 1 222333333 334699999999995 667 777778999999999988543
|
| >2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00018 Score=68.67 Aligned_cols=106 Identities=25% Similarity=0.254 Sum_probs=82.6
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCC
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPD 408 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~ 408 (590)
++..+.++.+++.|++.+.+..... ...+.++.+++ ++..+.+|.+.+.++++.++++|+|++ +....
T Consensus 25 ~~~~~~~~~l~~gGv~~iel~~k~~---~~~~~i~~~~~--~~~~~gag~vl~~d~~~~A~~~GAd~v----~~~~~--- 92 (207)
T 2yw3_A 25 EDLLGLARVLEEEGVGALEITLRTE---KGLEALKALRK--SGLLLGAGTVRSPKEAEAALEAGAAFL----VSPGL--- 92 (207)
T ss_dssp CCHHHHHHHHHHTTCCEEEEECSST---HHHHHHHHHTT--SSCEEEEESCCSHHHHHHHHHHTCSEE----EESSC---
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCh---HHHHHHHHHhC--CCCEEEeCeEeeHHHHHHHHHcCCCEE----EcCCC---
Confidence 3567889999999999999876433 23567777777 688888999889999999999999999 22211
Q ss_pred ccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEE
Q psy1056 409 MQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMM 458 (590)
Q Consensus 409 ~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~ 458 (590)
. .++.+.+...++|+|. |+.|+.++.+|+.+|||++.+
T Consensus 93 ------d----~~v~~~~~~~g~~~i~--G~~t~~e~~~A~~~Gad~v~~ 130 (207)
T 2yw3_A 93 ------L----EEVAALAQARGVPYLP--GVLTPTEVERALALGLSALKF 130 (207)
T ss_dssp ------C----HHHHHHHHHHTCCEEE--EECSHHHHHHHHHTTCCEEEE
T ss_pred ------C----HHHHHHHHHhCCCEEe--cCCCHHHHHHHHHCCCCEEEE
Confidence 1 1344444445789998 699999999999999999977
|
| >3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=3.3e-05 Score=98.77 Aligned_cols=132 Identities=12% Similarity=0.095 Sum_probs=86.5
Q ss_pred HHHHHHHHcC--CcEEEEecCCCch--hhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCC------EEEEcccc
Q psy1056 333 NRLKLLSQAG--VDVVILDSSQGNS--IYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIY------QIEMIKFI 402 (590)
Q Consensus 333 e~~~~li~~g--ad~i~V~~~~G~~--~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd------~i~v~~~~ 402 (590)
+.++.+++.| ++.+.+.. |.+ +...+.++.+++. ++.+|.=-+.|.+.++++.++|+| +|.+.
T Consensus 505 ~~~~~~~~~g~~vdgv~~~a--G~P~~ee~~~~i~~l~~~--Gi~~i~~~~~t~~~a~~~~~i~~d~~~~~y~vv~~--- 577 (3089)
T 3zen_D 505 RLVQRARQSGAPIDGLVVSA--GIPDLEEAVDIIDELNEV--GISHVVFKPGTVEQIRSVIRIAAEVPTKPVIVHIE--- 577 (3089)
T ss_dssp HHHHHHHHTTCSCCEEEEES--SCCCHHHHHHHHTSTTHH--HHCSEEECCCSHHHHHHHHHHHTTSTTSCEEEEEC---
T ss_pred HHHHHHHHcCCCceEEEEeC--CCCchhHhHHHHHHHHHc--CCEEEEEeCCCHHHHHHHHHhhhhcCCCcEEEEEe---
Confidence 5677888999 66676643 333 2234555555554 444444367789999999999998 55331
Q ss_pred cccCCCccccccchhHHHHHHHH-HhcCCCcEEecCCCCCHHHHHHHH-----------HcCCCEEEECccccCCCCCCC
Q psy1056 403 KKEYPDMQVIGRNGTAVYRVAEY-ASRRGVPVIADGGVQSVGHVMKAL-----------ALGASTAMMGSLLAGTSEAPG 470 (590)
Q Consensus 403 ~~~~~~~~~~g~~~~~l~~~~~~-~~~~~v~iia~GGi~~~~di~kal-----------alGA~~v~~g~~l~~~~es~~ 470 (590)
+-...|..++.-+.+.+.+.... ....++|||+.|||.++.+++.+| +||||+|+||++|..|.||..
T Consensus 578 G~eaGGH~g~~~~~~ll~~~~~~ir~~~~iPViaaGGI~d~~~vaaal~g~ws~~~~~p~lGAdGV~vGTrfl~t~Ea~~ 657 (3089)
T 3zen_D 578 GGRAGGHHSWEDLDDLLLATYSELRSRSNITICVGGGIGTPERSAEYLSGRWAEVHGYPLMPIDGILVGTAAMATLEATT 657 (3089)
T ss_dssp CSSSSEECCSCCHHHHHHHHHHHHTTCTTEEEEEESSCCCTTTTHHHHHTGGGGTTTCCCCCCSEEECSSTTTTCTTSCB
T ss_pred CCCcCCCCCcccHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHhccccccccCccCCCCCEEEecHHHHhCcccCC
Confidence 11100111111022223222222 233579999999999999999999 999999999999999999975
Q ss_pred c
Q psy1056 471 E 471 (590)
Q Consensus 471 ~ 471 (590)
+
T Consensus 658 s 658 (3089)
T 3zen_D 658 S 658 (3089)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00036 Score=69.44 Aligned_cols=118 Identities=11% Similarity=0.118 Sum_probs=92.7
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEecccc-CcHHHHHHHHCCCCEEEEcccccccCCC
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVL-FGYQPRATLLNFIYQIEMIKFIKKEYPD 408 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~-s~~~a~~l~~~Gvd~i~v~~~~~~~~~~ 408 (590)
+..+.+....+.|+..+.|.+..+...+..+.++.+++.. ++|++.++.. +..+...+.++|||+|-+-....
T Consensus 73 ~p~~~A~~y~~~GA~~isvltd~~~f~Gs~~~l~~ir~~v-~lPvl~kdfiid~~qv~~A~~~GAD~VlLi~a~l----- 146 (272)
T 3qja_A 73 DPAKLAQAYQDGGARIVSVVTEQRRFQGSLDDLDAVRASV-SIPVLRKDFVVQPYQIHEARAHGADMLLLIVAAL----- 146 (272)
T ss_dssp CHHHHHHHHHHTTCSEEEEECCGGGHHHHHHHHHHHHHHC-SSCEEEESCCCSHHHHHHHHHTTCSEEEEEGGGS-----
T ss_pred CHHHHHHHHHHcCCCEEEEecChhhcCCCHHHHHHHHHhC-CCCEEECccccCHHHHHHHHHcCCCEEEEecccC-----
Confidence 4567888889999999999988887788888999999887 7999988765 77789999999999994411110
Q ss_pred ccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcc
Q psy1056 409 MQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSL 461 (590)
Q Consensus 409 ~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~ 461 (590)
....+.++.+.+...++.++. .+.|..++.+|+.+|||.+.++..
T Consensus 147 ------~~~~l~~l~~~a~~lGl~~lv--ev~t~ee~~~A~~~Gad~IGv~~r 191 (272)
T 3qja_A 147 ------EQSVLVSMLDRTESLGMTALV--EVHTEQEADRALKAGAKVIGVNAR 191 (272)
T ss_dssp ------CHHHHHHHHHHHHHTTCEEEE--EESSHHHHHHHHHHTCSEEEEESB
T ss_pred ------CHHHHHHHHHHHHHCCCcEEE--EcCCHHHHHHHHHCCCCEEEECCC
Confidence 222344555666667888887 688999999999999999988753
|
| >4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00016 Score=70.92 Aligned_cols=131 Identities=18% Similarity=0.138 Sum_probs=83.1
Q ss_pred hHHHHHHHHHHcCCcEEEEec---CCCchhhHHHHHHHHHHhCCCceEEec-cccCcHHHHHHHHCCCCEEEE-------
Q psy1056 330 ADKNRLKLLSQAGVDVVILDS---SQGNSIYQIEMIKFIKKEYPDMQVIGG-NVLFGYQPRATLLNFIYQIEM------- 398 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~---~~G~~~~~l~~i~~i~~~~~~vpvi~g-~v~s~~~a~~l~~~Gvd~i~v------- 398 (590)
+..+.++...+.|++-+++-. +...+....+.++.+.+.. .+|+.+| ++.+.++++++.++|||-+.+
T Consensus 32 dP~~~a~~~~~~gad~lhvvDld~a~~~~~~~~~~i~~i~~~~-~~pl~vGGGIrs~e~~~~~l~~GadkVii~t~a~~~ 110 (243)
T 4gj1_A 32 NPLKKFKEYEKAGAKELHLVDLTGAKDPSKRQFALIEKLAKEV-SVNLQVGGGIRSKEEVKALLDCGVKRVVIGSMAIKD 110 (243)
T ss_dssp CHHHHHHHHHHHTCCEEEEEEHHHHHCGGGCCHHHHHHHHHHC-CSEEEEESSCCCHHHHHHHHHTTCSEEEECTTTTTC
T ss_pred CHHHHHHHHHHCCCCEEEEEecCcccccchhHHHHHHHHHHhc-CCCeEeccccccHHHHHHHHHcCCCEEEEccccccC
Confidence 456778888999999887643 2122222357788888877 6888875 445999999999999999977
Q ss_pred ------------------cccccccCCC---cccc-------------------------------cc-chhHHHHHHHH
Q psy1056 399 ------------------IKFIKKEYPD---MQVI-------------------------------GR-NGTAVYRVAEY 425 (590)
Q Consensus 399 ------------------~~~~~~~~~~---~~~~-------------------------------g~-~~~~l~~~~~~ 425 (590)
++......+. ..+| |. +---+..+...
T Consensus 111 p~li~e~~~~~g~q~iv~~iD~~~~~~~~v~~~gw~~~~~~~~~~~~~~~~~~g~~eil~t~Id~DGt~~G~d~~l~~~l 190 (243)
T 4gj1_A 111 ATLCLEILKEFGSEAIVLALDTILKEDYVVAVNAWQEASDKKLMEVLDFYSNKGLKHILCTDISKDGTMQGVNVRLYKLI 190 (243)
T ss_dssp HHHHHHHHHHHCTTTEEEEEEEEESSSEEEC--------CCBHHHHHHHHHTTTCCEEEEEETTC-----CCCHHHHHHH
T ss_pred CchHHHHHhcccCceEEEEEEEEeCCCCEEEecCceecccchHHHHHHHHhhcCCcEEEeeeecccccccCCCHHHHHHH
Confidence 1110000000 0011 11 00011112223
Q ss_pred HhcC-CCcEEecCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 426 ASRR-GVPVIADGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 426 ~~~~-~v~iia~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
++.. ++|+|++||+++..|+.+ |.-++++|.+|++|
T Consensus 191 ~~~~~~ipviasGGv~~~~Dl~~-l~~~~~gvivg~Al 227 (243)
T 4gj1_A 191 HEIFPNICIQASGGVASLKDLEN-LKGICSGVIVGKAL 227 (243)
T ss_dssp HHHCTTSEEEEESCCCSHHHHHH-TTTTCSEEEECHHH
T ss_pred HHhcCCCCEEEEcCCCCHHHHHH-HHccCchhehHHHH
Confidence 3333 599999999999999975 56679999999988
|
| >2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00016 Score=69.03 Aligned_cols=112 Identities=19% Similarity=0.181 Sum_probs=78.7
Q ss_pred HHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccc
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQV 411 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~ 411 (590)
.+.++..+++|+++++. ++.+ .+.++..+.. +.+++.| +.|++++.++.++|+|++.+-. ... ..
T Consensus 73 ~d~~~~A~~~GAd~v~~--~~~d----~~v~~~~~~~--g~~~i~G-~~t~~e~~~A~~~Gad~v~~fp--a~~---~g- 137 (207)
T 2yw3_A 73 PKEAEAALEAGAAFLVS--PGLL----EEVAALAQAR--GVPYLPG-VLTPTEVERALALGLSALKFFP--AEP---FQ- 137 (207)
T ss_dssp HHHHHHHHHHTCSEEEE--SSCC----HHHHHHHHHH--TCCEEEE-ECSHHHHHHHHHTTCCEEEETT--TTT---TT-
T ss_pred HHHHHHHHHcCCCEEEc--CCCC----HHHHHHHHHh--CCCEEec-CCCHHHHHHHHHCCCCEEEEec--Ccc---cc-
Confidence 36788888999999874 3322 3344445554 6778776 8899999999999999996621 111 00
Q ss_pred cccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccC
Q psy1056 412 IGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAG 464 (590)
Q Consensus 412 ~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~ 464 (590)
| ++.+..++.... ++|+++.|||. ..++...+++||++|.+|+.+..
T Consensus 138 -G--~~~lk~l~~~~~--~ipvvaiGGI~-~~n~~~~l~aGa~~vavgSai~~ 184 (207)
T 2yw3_A 138 -G--VRVLRAYAEVFP--EVRFLPTGGIK-EEHLPHYAALPNLLAVGGSWLLQ 184 (207)
T ss_dssp -H--HHHHHHHHHHCT--TCEEEEBSSCC-GGGHHHHHTCSSBSCEEESGGGS
T ss_pred -C--HHHHHHHHhhCC--CCcEEEeCCCC-HHHHHHHHhCCCcEEEEehhhhC
Confidence 1 122333333221 69999999995 79999999999999999998853
|
| >1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1 | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00017 Score=68.93 Aligned_cols=114 Identities=18% Similarity=0.143 Sum_probs=71.4
Q ss_pred HHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcc-cccccCCCcccccc
Q psy1056 336 KLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIK-FIKKEYPDMQVIGR 414 (590)
Q Consensus 336 ~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~-~~~~~~~~~~~~g~ 414 (590)
+.+.+.|++.+++....-. .+.++.+ .++..+. -.+.+.+++..+.+.|+|+|.+.. ..+.. -.+...
T Consensus 80 ~~a~~~gad~v~l~~~~~~----~~~~~~~---~~~~~~~-v~~~t~~e~~~~~~~g~d~i~~~~~~~~~~---~~~~~~ 148 (215)
T 1xi3_A 80 DVALAVDADGVQLGPEDMP----IEVAKEI---APNLIIG-ASVYSLEEALEAEKKGADYLGAGSVFPTKT---KEDARV 148 (215)
T ss_dssp HHHHHHTCSEEEECTTSCC----HHHHHHH---CTTSEEE-EEESSHHHHHHHHHHTCSEEEEECSSCC-------CCCC
T ss_pred HHHHHcCCCEEEECCccCC----HHHHHHh---CCCCEEE-EecCCHHHHHHHHhcCCCEEEEcCCccCCC---CCCCCC
Confidence 4567789999987432211 2223333 2233332 256788889889999999996532 22211 111001
Q ss_pred -chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccC
Q psy1056 415 -NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAG 464 (590)
Q Consensus 415 -~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~ 464 (590)
....+.++++ ..++|++++|||. +.++.+++.+||++|.+|+.+..
T Consensus 149 ~~~~~l~~l~~---~~~~pvia~GGI~-~~nv~~~~~~Ga~gv~vgs~i~~ 195 (215)
T 1xi3_A 149 IGLEGLRKIVE---SVKIPVVAIGGIN-KDNAREVLKTGVDGIAVISAVMG 195 (215)
T ss_dssp CHHHHHHHHHH---HCSSCEEEESSCC-TTTHHHHHTTTCSEEEESHHHHT
T ss_pred cCHHHHHHHHH---hCCCCEEEECCcC-HHHHHHHHHcCCCEEEEhHHHhC
Confidence 2223333333 3469999999998 99999999999999999998854
|
| >2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00012 Score=70.69 Aligned_cols=113 Identities=12% Similarity=0.123 Sum_probs=71.5
Q ss_pred HHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEc-ccccccCCCcccccc
Q psy1056 336 KLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMI-KFIKKEYPDMQVIGR 414 (590)
Q Consensus 336 ~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~-~~~~~~~~~~~~~g~ 414 (590)
+.+.+.|++.+++... +.. +..+++.++. .++.-.+.+.++++.+.+.|+|++.++ +..+.. -.+.+.
T Consensus 88 ~~a~~~gad~v~l~~~--~~~-----~~~~~~~~g~-~~~~~s~~t~~e~~~a~~~g~d~v~~~~v~~t~~---~~~~~~ 156 (227)
T 2tps_A 88 ELALNLKADGIHIGQE--DAN-----AKEVRAAIGD-MILGVSAHTMSEVKQAEEDGADYVGLGPIYPTET---KKDTRA 156 (227)
T ss_dssp HHHHHHTCSEEEECTT--SSC-----HHHHHHHHTT-SEEEEEECSHHHHHHHHHHTCSEEEECCSSCCCS---SSSCCC
T ss_pred HHHHHcCCCEEEECCC--ccC-----HHHHHHhcCC-cEEEEecCCHHHHHHHHhCCCCEEEECCCcCCCC---CCCCCC
Confidence 4566789999987322 111 3444444422 222224568888999999999999652 222221 111111
Q ss_pred --chhHHHHHHHHHhcCC-CcEEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 415 --NGTAVYRVAEYASRRG-VPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 415 --~~~~l~~~~~~~~~~~-v~iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
....+.+++ ...+ +|++++|||. +.++.+++.+||++|.+|+.+.
T Consensus 157 ~~~~~~l~~~~---~~~~~~pvia~GGI~-~~nv~~~~~~Ga~gv~vgs~i~ 204 (227)
T 2tps_A 157 VQGVSLIEAVR---RQGISIPIVGIGGIT-IDNAAPVIQAGADGVSMISAIS 204 (227)
T ss_dssp CCTTHHHHHHH---HTTCCCCEEEESSCC-TTTSHHHHHTTCSEEEESHHHH
T ss_pred ccCHHHHHHHH---HhCCCCCEEEEcCCC-HHHHHHHHHcCCCEEEEhHHhh
Confidence 222333333 3335 9999999998 9999999999999999999884
|
| >3aty_A Tcoye, prostaglandin F2A synthase; alpha/beta barrel, oxidoreductase, flavin mononucleotide; HET: FMN; 1.70A {Trypanosoma cruzi} PDB: 3atz_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00016 Score=75.58 Aligned_cols=124 Identities=11% Similarity=-0.051 Sum_probs=84.1
Q ss_pred hHHHHHHHHH-HcCCcEEEEecCCC----------------------ch----hhHHHHHHHHHHhCCCceEEec----c
Q psy1056 330 ADKNRLKLLS-QAGVDVVILDSSQG----------------------NS----IYQIEMIKFIKKEYPDMQVIGG----N 378 (590)
Q Consensus 330 ~~~e~~~~li-~~gad~i~V~~~~G----------------------~~----~~~l~~i~~i~~~~~~vpvi~g----~ 378 (590)
+..+.++.+. ++|.|.|.|+.++| .. +..++.++.+++..++-||.++ +
T Consensus 175 ~f~~AA~~a~~~aGfDgVEih~a~GYLl~QFlsp~~N~R~~D~yGG~slenR~r~~~eiv~aVr~avg~~~v~vRis~~~ 254 (379)
T 3aty_A 175 LFVEGAKNAIFKAGFDGVEIHGANGYLLDAFFRESSNKRQSGPYAGTTIDTRCQLIYDVTKSVCDAVGSDRVGLRISPLN 254 (379)
T ss_dssp HHHHHHHHHHHTSCCSEEEEEECTTSHHHHHHSTTTCCCCSSTTCTTSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTC
T ss_pred HHHHHHHHHHHhcCCCEEEEcCcCchHHhhccCCCCCccccCCCCccChhhhHHHHHHHHHHHHHhcCCCeEEEEECccc
Confidence 3445677788 89999999987543 11 2346788889888753466663 1
Q ss_pred ----c---c----CcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHH
Q psy1056 379 ----V---L----FGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMK 447 (590)
Q Consensus 379 ----v---~----s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~k 447 (590)
+ . ..+-++.|.++|+|+|.++..+. . .-++... +..+.+..++|||+.||| ++.++.+
T Consensus 255 ~~~~~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~~-~-----~~~~~~~----~~~ir~~~~iPvi~~G~i-t~~~a~~ 323 (379)
T 3aty_A 255 GVHGMIDSNPEALTKHLCKKIEPLSLAYLHYLRGDM-V-----NQQIGDV----VAWVRGSYSGVKISNLRY-DFEEADQ 323 (379)
T ss_dssp CGGGCCCSCHHHHHHHHHHHHGGGCCSEEEEECSCT-T-----SCCCCCH----HHHHHTTCCSCEEEESSC-CHHHHHH
T ss_pred ccccCCCCCCHHHHHHHHHHHHHhCCCEEEEcCCCc-C-----CCCccHH----HHHHHHHCCCcEEEECCC-CHHHHHH
Confidence 0 1 23446677789999997753221 1 0012112 333334457999999999 9999999
Q ss_pred HHHcC-CCEEEECccccC
Q psy1056 448 ALALG-ASTAMMGSLLAG 464 (590)
Q Consensus 448 alalG-A~~v~~g~~l~~ 464 (590)
+|+.| ||+|++|++|..
T Consensus 324 ~l~~g~aD~V~igR~~l~ 341 (379)
T 3aty_A 324 QIREGKVDAVAFGAKFIA 341 (379)
T ss_dssp HHHTTSCSEEEESHHHHH
T ss_pred HHHcCCCeEEEecHHHHh
Confidence 99998 999999998864
|
| >3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00019 Score=70.17 Aligned_cols=143 Identities=14% Similarity=0.067 Sum_probs=90.6
Q ss_pred EEeEeecc--chhHHHHHHHHHHcCCcEEEEecCCCch----hhHHHHHHHHHHhCCCceEEecc-ccCcH-HHHHHHHC
Q psy1056 320 IVGAAIGT--READKNRLKLLSQAGVDVVILDSSQGNS----IYQIEMIKFIKKEYPDMQVIGGN-VLFGY-QPRATLLN 391 (590)
Q Consensus 320 ~v~a~i~~--~~~~~e~~~~li~~gad~i~V~~~~G~~----~~~l~~i~~i~~~~~~vpvi~g~-v~s~~-~a~~l~~~ 391 (590)
.+..++-. ...+.+.++.+.++|++.+++|.-.|+. ..=...++.+|+..|+.|+-+.= +.+++ -++.+.++
T Consensus 29 ~i~pSilsaD~~~L~~~i~~l~~~G~d~lHvDVmDg~FVpnit~G~~~v~~lr~~~p~~~ldvHLmv~~p~~~i~~~~~a 108 (246)
T 3inp_A 29 QINPSILSADLARLGDDVKAVLAAGADNIHFDVMDNHYVPNLTFGPMVLKALRDYGITAGMDVHLMVKPVDALIESFAKA 108 (246)
T ss_dssp EEEEBGGGSCGGGHHHHHHHHHHTTCCCEEEEEEBSSSSSCBCCCHHHHHHHHHHTCCSCEEEEEECSSCHHHHHHHHHH
T ss_pred eeehhhhcCChhhHHHHHHHHHHcCCCEEEEEecCCCcCcchhcCHHHHHHHHHhCCCCeEEEEEeeCCHHHHHHHHHHc
Confidence 34444432 2345678888889999999999876652 11157888888887667765422 22333 46678899
Q ss_pred CCCEEEEccccc----------ccC---------------------------------CCccccccchhH---HHHHHHH
Q psy1056 392 FIYQIEMIKFIK----------KEY---------------------------------PDMQVIGRNGTA---VYRVAEY 425 (590)
Q Consensus 392 Gvd~i~v~~~~~----------~~~---------------------------------~~~~~~g~~~~~---l~~~~~~ 425 (590)
|+|+|-+-.+.+ +.. +||.|-.+.+.. +.++++.
T Consensus 109 GAd~itvH~Ea~~~~~~~i~~ir~~G~k~Gvalnp~Tp~e~l~~~l~~vD~VlvMsV~PGfgGQ~fi~~~l~KI~~lr~~ 188 (246)
T 3inp_A 109 GATSIVFHPEASEHIDRSLQLIKSFGIQAGLALNPATGIDCLKYVESNIDRVLIMSVNPGFGGQKFIPAMLDKAKEISKW 188 (246)
T ss_dssp TCSEEEECGGGCSCHHHHHHHHHTTTSEEEEEECTTCCSGGGTTTGGGCSEEEEECSCTTC--CCCCTTHHHHHHHHHHH
T ss_pred CCCEEEEccccchhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHhcCCEEEEeeecCCCCCcccchHHHHHHHHHHHH
Confidence 999998811100 000 022221112333 4444544
Q ss_pred Hhc--CCCcEEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 426 ASR--RGVPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 426 ~~~--~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
... .+++|-++|||+ +..+..+..+|||.+++|+.+.
T Consensus 189 ~~~~~~~~~I~VDGGI~-~~ti~~~~~aGAD~~V~GSaIf 227 (246)
T 3inp_A 189 ISSTDRDILLEIDGGVN-PYNIAEIAVCGVNAFVAGSAIF 227 (246)
T ss_dssp HHHHTSCCEEEEESSCC-TTTHHHHHTTTCCEEEESHHHH
T ss_pred HHhcCCCeeEEEECCcC-HHHHHHHHHcCCCEEEEehHHh
Confidence 432 358899999997 6789999999999999999874
|
| >3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00026 Score=68.68 Aligned_cols=134 Identities=17% Similarity=0.126 Sum_probs=85.1
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCch----hhHHHHHHHHHHhC-CCceEEecc-ccCc-HHHHHHHHCCCCEEEEcccc
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNS----IYQIEMIKFIKKEY-PDMQVIGGN-VLFG-YQPRATLLNFIYQIEMIKFI 402 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~----~~~l~~i~~i~~~~-~~vpvi~g~-v~s~-~~a~~l~~~Gvd~i~v~~~~ 402 (590)
.+.+.++.+.++|++.+++|.-.|+. ..=...++.+++.+ ++.|+-++= +.++ .-.+.+.++|+|+|-+-.+.
T Consensus 18 ~l~~~i~~l~~~g~d~~h~DVmDg~Fvpn~~~G~~~v~~ir~~~~~~~~~dvhLmv~~p~~~i~~~~~aGad~itvH~Ea 97 (228)
T 3ovp_A 18 NLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQLGQDPFFDMHMMVSKPEQWVKPMAVAGANQYTFHLEA 97 (228)
T ss_dssp GHHHHHHHHHHTTCSCEEEEEEBSSSSSCBCBCHHHHHHHHHHHCSSSCEEEEEECSCGGGGHHHHHHHTCSEEEEEGGG
T ss_pred hHHHHHHHHHHcCCCEEEEEecCCCcCcccccCHHHHHHHHHhhCCCCcEEEEEEeCCHHHHHHHHHHcCCCEEEEccCC
Confidence 45677888889999999998876652 11256788888775 566554321 1222 34677888999999871110
Q ss_pred cc--------------------------cC--------C-----C-cccc-cc--chhHHHHHHHHHhcC-CCcEEecCC
Q psy1056 403 KK--------------------------EY--------P-----D-MQVI-GR--NGTAVYRVAEYASRR-GVPVIADGG 438 (590)
Q Consensus 403 ~~--------------------------~~--------~-----~-~~~~-g~--~~~~l~~~~~~~~~~-~v~iia~GG 438 (590)
+. .. + . ..|+ |. .+..+..+++..... +.++.++||
T Consensus 98 ~~~~~~~i~~i~~~G~k~gval~p~t~~e~l~~~l~~~D~Vl~msv~pGf~Gq~f~~~~l~ki~~lr~~~~~~~I~VdGG 177 (228)
T 3ovp_A 98 TENPGALIKDIRENGMKVGLAIKPGTSVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGG 177 (228)
T ss_dssp CSCHHHHHHHHHHTTCEEEEEECTTSCGGGTGGGGGGCSEEEEESSCTTTCSCCCCGGGHHHHHHHHHHCTTCEEEEESS
T ss_pred chhHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHhccCCeEEEeeecCCCCCcccCHHHHHHHHHHHHhcCCCCEEEeCC
Confidence 00 00 0 0 1122 11 234444444433222 488999999
Q ss_pred CCCHHHHHHHHHcCCCEEEECccccC
Q psy1056 439 VQSVGHVMKALALGASTAMMGSLLAG 464 (590)
Q Consensus 439 i~~~~di~kalalGA~~v~~g~~l~~ 464 (590)
| ++..+..+...|||.+++|+.+..
T Consensus 178 I-~~~t~~~~~~aGAd~~VvGsaIf~ 202 (228)
T 3ovp_A 178 V-GPDTVHKCAEAGANMIVSGSAIMR 202 (228)
T ss_dssp C-STTTHHHHHHHTCCEEEESHHHHT
T ss_pred c-CHHHHHHHHHcCCCEEEEeHHHhC
Confidence 9 589999999999999999998743
|
| >3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00061 Score=64.77 Aligned_cols=121 Identities=17% Similarity=0.112 Sum_probs=76.0
Q ss_pred HHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEe--ccccCcHH-HHHHHHCCCCEEEEcccccccCCCcc
Q psy1056 334 RLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIG--GNVLFGYQ-PRATLLNFIYQIEMIKFIKKEYPDMQ 410 (590)
Q Consensus 334 ~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~--g~v~s~~~-a~~l~~~Gvd~i~v~~~~~~~~~~~~ 410 (590)
.++.+.++|++.++++...+. ....+.++.+++. +.++.+ ....++++ ++.+.+.|+|++.+....+.. +
T Consensus 69 ~~~~a~~~Gad~v~vh~~~~~-~~~~~~~~~~~~~--g~~~gv~~~s~~~p~~~~~~~~~~g~d~v~~~~~~~~~---~- 141 (207)
T 3ajx_A 69 EADIAFKAGADLVTVLGSADD-STIAGAVKAAQAH--NKGVVVDLIGIEDKATRAQEVRALGAKFVEMHAGLDEQ---A- 141 (207)
T ss_dssp HHHHHHHTTCSEEEEETTSCH-HHHHHHHHHHHHH--TCEEEEECTTCSSHHHHHHHHHHTTCSEEEEECCHHHH---T-
T ss_pred HHHHHHhCCCCEEEEeccCCh-HHHHHHHHHHHHc--CCceEEEEecCCChHHHHHHHHHhCCCEEEEEeccccc---c-
Confidence 467788999999998876652 1233444555554 445422 22225555 677778899998442111111 1
Q ss_pred ccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCC
Q psy1056 411 VIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGT 465 (590)
Q Consensus 411 ~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~ 465 (590)
+|..+.. ..+++.+.. ++|++++|||+ +..+.++++.|||++.+|+.+..+
T Consensus 142 -~g~~~~~-~~i~~~~~~-~~pi~v~GGI~-~~~~~~~~~aGad~vvvGsaI~~~ 192 (207)
T 3ajx_A 142 -KPGFDLN-GLLAAGEKA-RVPFSVAGGVK-VATIPAVQKAGAEVAVAGGAIYGA 192 (207)
T ss_dssp -STTCCTH-HHHHHHHHH-TSCEEEESSCC-GGGHHHHHHTTCSEEEESHHHHTS
T ss_pred -cCCCchH-HHHHHhhCC-CCCEEEECCcC-HHHHHHHHHcCCCEEEEeeeccCC
Confidence 1221111 344444432 58999999997 788889999999999999988543
|
| >2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomi NPPSFA; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.0004 Score=69.88 Aligned_cols=66 Identities=12% Similarity=0.081 Sum_probs=46.0
Q ss_pred HHHHHHHHHcCCcEEEEec--------CCCc-hhhHHHHHHHHHHhCCCceEEecccc-CcHHHHHHHHCCCCEEEE
Q psy1056 332 KNRLKLLSQAGVDVVILDS--------SQGN-SIYQIEMIKFIKKEYPDMQVIGGNVL-FGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~--------~~G~-~~~~l~~i~~i~~~~~~vpvi~g~v~-s~~~a~~l~~~Gvd~i~v 398 (590)
.+.++...++|+..+.+.. ..|. +-.-.+.++.+++.. ++||+.|.=. ..+.++.+.++|||+|+.
T Consensus 27 ~e~A~~ae~aGA~aI~~l~~v~~d~~~~~G~arm~~p~~i~~I~~av-~iPV~~K~rig~~~e~qilea~GaD~Id~ 102 (330)
T 2yzr_A 27 VEQAQIAEEAGAVAVMALERVPADIRAAGGVARMSDPALIEEIMDAV-SIPVMAKCRIGHTTEALVLEAIGVDMIDE 102 (330)
T ss_dssp HHHHHHHHHHTCSEEEECSSCHHHHC--CCCCCCCCHHHHHHHHHHC-SSCEEEEEETTCHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHcCCCEEEecCCccccccCCcchhhcCCHHHHHHHHHhc-CCCeEEEEeecchHHHHHHHHcCCCEEeh
Confidence 4677777888999985532 1231 111256778888877 7999987544 467888888899999975
|
| >2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.0004 Score=66.92 Aligned_cols=120 Identities=18% Similarity=0.145 Sum_probs=74.5
Q ss_pred HHHHHcCCcEEEEecCCCch--hhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccccc
Q psy1056 336 KLLSQAGVDVVILDSSQGNS--IYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIG 413 (590)
Q Consensus 336 ~~li~~gad~i~V~~~~G~~--~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g 413 (590)
..+.+.|++.+.+..++... ....+.++..++. ++.+++ .+.+.++.+++.+.|.++|-+ ..+. .-|.|
T Consensus 76 ~~~~~~Gad~Vll~~ser~l~~~e~~~~~~~a~~~--Gl~~iv-~v~~~~e~~~~~~~~~~~i~~---~~~~---~iGtG 146 (219)
T 2h6r_A 76 EAIKDCGCKGTLINHSEKRMLLADIEAVINKCKNL--GLETIV-CTNNINTSKAVAALSPDCIAV---EPPE---LIGTG 146 (219)
T ss_dssp HHHHHHTCCEEEESBTTBCCBHHHHHHHHHHHHHH--TCEEEE-EESSSHHHHHHTTTCCSEEEE---CCCC--------
T ss_pred HHHHHcCCCEEEECCccccCCHHHHHHHHHHHHHC--CCeEEE-EeCCchHHHHHHhCCCCEEEE---Eecc---ccccC
Confidence 56778999999985543111 2234555555555 554444 566667778888889987733 1111 10222
Q ss_pred ---c--chh---HHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCC
Q psy1056 414 ---R--NGT---AVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGT 465 (590)
Q Consensus 414 ---~--~~~---~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~ 465 (590)
. ++. ...+..+... .++|+++.|||+++.++.++...|||+|.+|+.+..+
T Consensus 147 ~~~~t~~~~~~~~~~~~ir~~~-~~~~ii~ggGI~~~~~~~~~~~~gaDgvlVGsAi~~~ 205 (219)
T 2h6r_A 147 IPVSKANPEVVEGTVRAVKEIN-KDVKVLCGAGISKGEDVKAALDLGAEGVLLASGVVKA 205 (219)
T ss_dssp ---------CSHHHHHHHHHHC-TTCEEEECSSCCSHHHHHHHHTTTCCCEEESHHHHTC
T ss_pred CCCccCCHHHHHHHHHHHHhcc-CCCeEEEEeCcCcHHHHHHHhhCCCCEEEEcHHHhCc
Confidence 1 121 2222222221 2699999999999999999999999999999988654
|
| >3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0004 Score=66.47 Aligned_cols=80 Identities=13% Similarity=0.072 Sum_probs=49.7
Q ss_pred ccCcHHHHHHHHCCCCEEEEcc-cccccCCCc-cccccchhHHHHHHHHHhc--CCCcEEecCCCCCHHHHHHHHHcCCC
Q psy1056 379 VLFGYQPRATLLNFIYQIEMIK-FIKKEYPDM-QVIGRNGTAVYRVAEYASR--RGVPVIADGGVQSVGHVMKALALGAS 454 (590)
Q Consensus 379 v~s~~~a~~l~~~Gvd~i~v~~-~~~~~~~~~-~~~g~~~~~l~~~~~~~~~--~~v~iia~GGi~~~~di~kalalGA~ 454 (590)
+.|.+++.++. .|+|+|.++. ..+..+.+. ..+ .... ++..+.. .++|+++.|||. +.++..+++.||+
T Consensus 95 ~~t~~e~~~A~-~GaDyv~~g~vf~t~sk~~~~~~~--g~~~---l~~~~~~~~~~iPviaiGGI~-~~nv~~~~~~Ga~ 167 (210)
T 3ceu_A 95 CHSVEEVKNRK-HFYDYVFMSPIYDSISKVNYYSTY--TAEE---LREAQKAKIIDSKVMALGGIN-EDNLLEIKDFGFG 167 (210)
T ss_dssp ECSHHHHHTTG-GGSSEEEECCCC---------CCC--CHHH---HHHHHHTTCSSTTEEEESSCC-TTTHHHHHHTTCS
T ss_pred cCCHHHHHHHh-hCCCEEEECCcCCCCCCCCCCCCC--CHHH---HHHHHHhcCCCCCEEEECCCC-HHHHHHHHHhCCC
Confidence 34667777666 7888885522 111111110 011 2222 3333333 369999999996 8999999999999
Q ss_pred EEEECccccCC
Q psy1056 455 TAMMGSLLAGT 465 (590)
Q Consensus 455 ~v~~g~~l~~~ 465 (590)
+|.+++.+...
T Consensus 168 gVav~s~i~~~ 178 (210)
T 3ceu_A 168 GAVVLGDLWNK 178 (210)
T ss_dssp EEEESHHHHTT
T ss_pred EEEEhHHhHcC
Confidence 99999988654
|
| >2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00043 Score=68.51 Aligned_cols=172 Identities=13% Similarity=0.069 Sum_probs=97.9
Q ss_pred CCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCCCCCCcccCCceEEeEeeccchhHHHHHHHHHHcCCcEE
Q psy1056 267 ISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVV 346 (590)
Q Consensus 267 ~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~gad~i 346 (590)
.+..+..+.+.+.+...+-++|=++ ...++++..... ..-.+.++..+. +. .++.++ +|++.+
T Consensus 38 ~dp~~~A~~~~~~Ga~~l~vvDL~~------~n~~~i~~i~~~-----~~~pv~vgGGir---~~--~~~~~l-~Ga~~V 100 (260)
T 2agk_A 38 HPSSYYAKLYKDRDVQGCHVIKLGP------NNDDAAREALQE-----SPQFLQVGGGIN---DT--NCLEWL-KWASKV 100 (260)
T ss_dssp CCHHHHHHHHHHTTCTTCEEEEESS------SCHHHHHHHHHH-----STTTSEEESSCC---TT--THHHHT-TTCSCE
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCC------CCHHHHHHHHhc-----CCceEEEeCCCC---HH--HHHHHh-cCCCEE
Confidence 3456677788888999999987544 222333332111 112233444443 22 445566 999999
Q ss_pred EEecCC-Cc-----hhhHHHHHHHHHHhCCCc--eEEec---c----c-----------cCc-HHHHHHHHCCCCEEEEc
Q psy1056 347 ILDSSQ-GN-----SIYQIEMIKFIKKEYPDM--QVIGG---N----V-----------LFG-YQPRATLLNFIYQIEMI 399 (590)
Q Consensus 347 ~V~~~~-G~-----~~~~l~~i~~i~~~~~~v--pvi~g---~----v-----------~s~-~~a~~l~~~Gvd~i~v~ 399 (590)
.+.+.- .+ ++.+.+.++.+..+ .+ ++=++ + | .-. +.++.+.++ ++.|.+
T Consensus 101 iigs~a~~~~g~~~p~~~~~~~~~~g~~--~ivv~iD~k~~~~~g~~V~~~gw~~~t~~~~~~e~a~~~~~~-a~~il~- 176 (260)
T 2agk_A 101 IVTSWLFTKEGHFQLKRLERLTELCGKD--RIVVDLSCRKTQDGRWIVAMNKWQTLTDLELNADTFRELRKY-TNEFLI- 176 (260)
T ss_dssp EECGGGBCTTCCBCHHHHHHHHHHHCGG--GEEEEEEEEEEETTEEEEEETTTTEEEEEEESHHHHHHHTTT-CSEEEE-
T ss_pred EECcHHHhhcCCCCHHHHHHHHHHhCcC--cEEEEEEeeecCCCceEEEEcCCccccCccHHHHHHHHHHHh-cCEEEE-
Confidence 887641 22 33333334433311 11 11122 1 1 113 788999999 999844
Q ss_pred ccccccCCCccccccchhHHHHHHHHHh-cCCCcEEecCCCCCHHHHHHHHHc--CCCEEEECccc
Q psy1056 400 KFIKKEYPDMQVIGRNGTAVYRVAEYAS-RRGVPVIADGGVQSVGHVMKALAL--GASTAMMGSLL 462 (590)
Q Consensus 400 ~~~~~~~~~~~~~g~~~~~l~~~~~~~~-~~~v~iia~GGi~~~~di~kalal--GA~~v~~g~~l 462 (590)
+.+.+++ +.-|...+.+.++.+.+. ..++|+|++|||+++.|+.+++.+ ||++|++|+.|
T Consensus 177 --t~i~~dG-~~~G~d~eli~~l~~~~~~~~~iPVIasGGi~s~ed~~~l~~~~~G~~gvivg~al 239 (260)
T 2agk_A 177 --HAADVEG-LCGGIDELLVSKLFEWTKDYDDLKIVYAGGAKSVDDLKLVDELSHGKVDLTFGSSL 239 (260)
T ss_dssp --EC--------CCCCHHHHHHHHHHHTTCSSCEEEEESCCCCTHHHHHHHHHHTTCEEEECCTTB
T ss_pred --Eeecccc-CcCCCCHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHhcCCCCEEEeeCCH
Confidence 2222111 111333444445554431 005999999999999999999999 99999999985
|
| >2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00051 Score=66.54 Aligned_cols=124 Identities=15% Similarity=0.196 Sum_probs=78.4
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCch-hhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEE---ccccccc-
Q psy1056 331 DKNRLKLLSQAGVDVVILDSSQGNS-IYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEM---IKFIKKE- 405 (590)
Q Consensus 331 ~~e~~~~li~~gad~i~V~~~~G~~-~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v---~~~~~~~- 405 (590)
..+.++.+.++|+|++.+-.+.|.+ ..+.+.++.+|+ . ++|++.= .-..+ .+.+|+|++.+ .++....
T Consensus 22 t~~~~~~l~~~GaD~IelG~S~g~t~~~~~~~v~~ir~-~-~~Pivl~-~y~~n----~i~~gvDg~iipdLp~ee~~~~ 94 (234)
T 2f6u_A 22 TDEIIKAVADSGTDAVMISGTQNVTYEKARTLIEKVSQ-Y-GLPIVVE-PSDPS----NVVYDVDYLFVPTVLNSADGDW 94 (234)
T ss_dssp CHHHHHHHHTTTCSEEEECCCTTCCHHHHHHHHHHHTT-S-CCCEEEC-CSSCC----CCCCCSSEEEEEEETTBSBGGG
T ss_pred cHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHHHHhcC-C-CCCEEEe-cCCcc----hhhcCCCEEEEcccCCCCCHHH
Confidence 3567889999999999998777755 557889999987 4 7888741 11100 11667777765 0000000
Q ss_pred ------------------CC--------------------------------------------------Cc---ccccc
Q psy1056 406 ------------------YP--------------------------------------------------DM---QVIGR 414 (590)
Q Consensus 406 ------------------~~--------------------------------------------------~~---~~~g~ 414 (590)
.+ ++ ...|.
T Consensus 95 ~~g~~~~~~~~~~~~~~~~g~~~~~l~~I~~gYil~~P~~~~~rl~~g~~~~~~e~~~~~a~~g~~~l~~~~Vyl~~~G~ 174 (234)
T 2f6u_A 95 ITGKHAQWVRMHYENLQKFTEIIESEFIQIEGYIVLNPDSAVARVTKALCNIDKELAASYALVGEKLFNLPIIYIEYSGT 174 (234)
T ss_dssp TTHHHHHHHHTTGGGHHHHHHHHHSTTEEEEEEEECCTTSHHHHHTTBCCCCCHHHHHHHHHHHHHTTCCSEEEEECTTS
T ss_pred HhhhHHHHHHhhhhhHHHcCCcccceeeeecceEEECCCCceEEeecCCCCCCHHHHHHHHHhhhhhcCCCEEEEeCCCC
Confidence 00 00 00011
Q ss_pred chhHHHHHHHHHhcC-CCcEEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 415 NGTAVYRVAEYASRR-GVPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 415 ~~~~l~~~~~~~~~~-~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
......+.+..+.. ++|++..|||+++.++.+++. |||.|.+|+++.
T Consensus 175 -~~~~~~i~~i~~~~~~~Pv~vGgGI~s~e~a~~~~~-gAd~VIVGSa~v 222 (234)
T 2f6u_A 175 -YGNPELVAEVKKVLDKARLFYGGGIDSREKAREMLR-YADTIIVGNVIY 222 (234)
T ss_dssp -CCCHHHHHHHHHHCSSSEEEEESCCCSHHHHHHHHH-HSSEEEECHHHH
T ss_pred -cchHHHHHHHHHhCCCCCEEEEecCCCHHHHHHHHh-CCCEEEEChHHH
Confidence 00011223333344 689999999999999999998 999999999884
|
| >3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0014 Score=64.91 Aligned_cols=119 Identities=11% Similarity=0.046 Sum_probs=90.0
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccc-cCcHHHHHHHHCCCCEEEEcccccccCC
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNV-LFGYQPRATLLNFIYQIEMIKFIKKEYP 407 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v-~s~~~a~~l~~~Gvd~i~v~~~~~~~~~ 407 (590)
-+..+.+....++|++.+.|.+..+...+-.+.+..+++.. ++||+.|+. .+..++..+..+|||+|-+- +...
T Consensus 79 ~dp~~~A~~y~~~GA~~IsVltd~~~f~Gs~~~L~~ir~~v-~lPVl~Kdfi~d~~qi~ea~~~GAD~VlLi-~a~L--- 153 (272)
T 3tsm_A 79 FDPPALAKAYEEGGAACLSVLTDTPSFQGAPEFLTAARQAC-SLPALRKDFLFDPYQVYEARSWGADCILII-MASV--- 153 (272)
T ss_dssp CCHHHHHHHHHHTTCSEEEEECCSTTTCCCHHHHHHHHHTS-SSCEEEESCCCSTHHHHHHHHTTCSEEEEE-TTTS---
T ss_pred CCHHHHHHHHHHCCCCEEEEeccccccCCCHHHHHHHHHhc-CCCEEECCccCCHHHHHHHHHcCCCEEEEc-cccc---
Confidence 35567888999999999998776555545577888888877 799999875 48889999999999998431 1111
Q ss_pred CccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcc
Q psy1056 408 DMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSL 461 (590)
Q Consensus 408 ~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~ 461 (590)
....+.++.+.+...++.+++ =+.|..++.+|+.+||+.+.+..+
T Consensus 154 -------~~~~l~~l~~~a~~lGl~~lv--evh~~eEl~~A~~~ga~iIGinnr 198 (272)
T 3tsm_A 154 -------DDDLAKELEDTAFALGMDALI--EVHDEAEMERALKLSSRLLGVNNR 198 (272)
T ss_dssp -------CHHHHHHHHHHHHHTTCEEEE--EECSHHHHHHHTTSCCSEEEEECB
T ss_pred -------CHHHHHHHHHHHHHcCCeEEE--EeCCHHHHHHHHhcCCCEEEECCC
Confidence 223355566666667888887 468999999999999999987743
|
| >1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00074 Score=65.69 Aligned_cols=129 Identities=13% Similarity=0.149 Sum_probs=74.5
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCch-hhHHHHHHHHHHhCCCceEEe--cc---cc---------------CcHH-----
Q psy1056 331 DKNRLKLLSQAGVDVVILDSSQGNS-IYQIEMIKFIKKEYPDMQVIG--GN---VL---------------FGYQ----- 384 (590)
Q Consensus 331 ~~e~~~~li~~gad~i~V~~~~G~~-~~~l~~i~~i~~~~~~vpvi~--g~---v~---------------s~~~----- 384 (590)
..+.++.+.++|+|++.+-.+.|-+ ..+++.++.+|+ . ++|++. +. +. +.+-
T Consensus 22 t~~~~~~l~~~GaD~ielG~S~Gvt~~~~~~~v~~ir~-~-~~Pivlm~y~~n~i~~G~dg~iiPdLp~ee~~~~~~g~~ 99 (240)
T 1viz_A 22 PDEQLEILCESGTDAVIIGGSDGVTEDNVLRMMSKVRR-F-LVPCVLEVSAIEAIVPGFDLYFIPSVLNSKNADWIVGMH 99 (240)
T ss_dssp CHHHHHHHHTSCCSEEEECC----CHHHHHHHHHHHTT-S-SSCEEEECSCGGGCCSCCSEEEEEEETTBSSGGGTTHHH
T ss_pred cHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHHHHhhC-c-CCCEEEecCccccccCCCCEEEEcccCcccChhhhcchh
Confidence 4567889999999999998877766 447889999988 4 789884 11 10 0111
Q ss_pred HHHHHHCC-----CCEEE----E-ccccc--cc------CC----------------Cc---cccccchhHHHHHHHHHh
Q psy1056 385 PRATLLNF-----IYQIE----M-IKFIK--KE------YP----------------DM---QVIGRNGTAVYRVAEYAS 427 (590)
Q Consensus 385 a~~l~~~G-----vd~i~----v-~~~~~--~~------~~----------------~~---~~~g~~~~~l~~~~~~~~ 427 (590)
...+.+.| .+.|- + ...+. |. .+ +| .+.|. ......+.+..+
T Consensus 100 ~~a~~~~g~~~~~l~~i~~gy~l~~P~~~~~rl~~~d~~~~~~~~~~~a~~g~~~~~~~VYl~s~G~-~~~~~~i~~i~~ 178 (240)
T 1viz_A 100 QKAMKEYGELMSMEEIVAEGYCIANPDCKAAALTEADADLNMDDIVAYARVSELLQLPIFYLEYSGV-LGDIEAVKKTKA 178 (240)
T ss_dssp HHHHHHCHHHHHHSCEEEEEEEECCTTSHHHHHTTBCCCCCHHHHHHHHHHHHHTTCSEEEEECTTS-CCCHHHHHHHHH
T ss_pred HHHHHHcCCCCcceeeeecccEEECCCCceEEeeccCCCCCHHHHHHHHHhCcccCCCEEEEeCCCc-cChHHHHHHHHH
Confidence 22333344 33332 1 00000 00 00 00 00111 001112333333
Q ss_pred cC-CCcEEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 428 RR-GVPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 428 ~~-~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
.. ++|++..|||+|+.++.+++. |||.|.+|+++.
T Consensus 179 ~~~~~Pv~vGgGI~t~e~a~~~~~-gAd~VIVGSa~v 214 (240)
T 1viz_A 179 VLETSTLFYGGGIKDAETAKQYAE-HADVIVVGNAVY 214 (240)
T ss_dssp TCSSSEEEEESSCCSHHHHHHHHT-TCSEEEECTHHH
T ss_pred hcCCCCEEEEeccCCHHHHHHHHh-CCCEEEEChHHH
Confidence 44 689999999999999999888 999999999884
|
| >3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 1.75A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1o0y_A* 3r13_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0036 Score=61.20 Aligned_cols=119 Identities=14% Similarity=0.087 Sum_probs=80.8
Q ss_pred HHHHHHHHcCCcEEEEecC-----CCchhhHHHHHHHHHHhCCCc--eEEecccc-CcHHH----HHHHHCCCCEEEEcc
Q psy1056 333 NRLKLLSQAGVDVVILDSS-----QGNSIYQIEMIKFIKKEYPDM--QVIGGNVL-FGYQP----RATLLNFIYQIEMIK 400 (590)
Q Consensus 333 e~~~~li~~gad~i~V~~~-----~G~~~~~l~~i~~i~~~~~~v--pvi~g~v~-s~~~a----~~l~~~Gvd~i~v~~ 400 (590)
..++..++.|++-+-+..+ .|+...+.+.+..+++..++. .+|+-... +.+.. +.+.++|+|+|+.|
T Consensus 115 ~Ea~~Ai~~GAdEIDmViNig~lk~g~~~~v~~eI~~v~~a~~~~~lKVIlEt~~Lt~eei~~A~~ia~eaGADfVKTS- 193 (260)
T 3r12_A 115 HEAIFAVESGADEIDMVINVGMLKAKEWEYVYEDIRSVVESVKGKVVKVIIETCYLDTEEKIAACVISKLAGAHFVKTS- 193 (260)
T ss_dssp HHHHHHHHHTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCGGGCCHHHHHHHHHHHHHTTCSEEECC-
T ss_pred HHHHHHHHcCCCEEEEEeehhhhccccHHHHHHHHHHHHHhcCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCcCEEEcC-
Confidence 3567778889998766543 356666788888888776443 44442221 43333 44567999999433
Q ss_pred cccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEEC
Q psy1056 401 FIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMG 459 (590)
Q Consensus 401 ~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g 459 (590)
|+ |...|.|+..+...++... .+++|-++|||||..|+.+-+.+||+-+...
T Consensus 194 -TG-----f~~~GAT~edV~lm~~~vg-~~v~VKaAGGIrt~~~al~mi~aGA~RiGtS 245 (260)
T 3r12_A 194 -TG-----FGTGGATAEDVHLMKWIVG-DEMGVKASGGIRTFEDAVKMIMYGADRIGTS 245 (260)
T ss_dssp -CS-----SSSCCCCHHHHHHHHHHHC-TTSEEEEESSCCSHHHHHHHHHTTCSEEEES
T ss_pred -CC-----CCCCCCCHHHHHHHHHHhC-CCceEEEeCCCCCHHHHHHHHHcCCceeecc
Confidence 11 3323336766666666653 4699999999999999999999999977444
|
| >1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.002 Score=61.94 Aligned_cols=119 Identities=18% Similarity=0.127 Sum_probs=81.2
Q ss_pred HHHHHHHHcCCcEEEEecC-----CCchhhHHHHHHHHHHhCC--CceEEecccc-CcH----HHHHHHHCCCCEEEEcc
Q psy1056 333 NRLKLLSQAGVDVVILDSS-----QGNSIYQIEMIKFIKKEYP--DMQVIGGNVL-FGY----QPRATLLNFIYQIEMIK 400 (590)
Q Consensus 333 e~~~~li~~gad~i~V~~~-----~G~~~~~l~~i~~i~~~~~--~vpvi~g~v~-s~~----~a~~l~~~Gvd~i~v~~ 400 (590)
..++..++.|++.+-+... .|+...+.+.+..+++..+ .+|+|+-... +.+ .++.+.++|+|+|+.+-
T Consensus 75 ~e~~~Ai~~GAdevd~vinig~~~~g~~~~v~~ei~~v~~a~~~~~lkvIlet~~l~~e~i~~a~~ia~eaGADfVKTsT 154 (220)
T 1ub3_A 75 LEAALACARGADEVDMVLHLGRAKAGDLDYLEAEVRAVREAVPQAVLKVILETGYFSPEEIARLAEAAIRGGADFLKTST 154 (220)
T ss_dssp HHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHSTTSEEEEECCGGGSCHHHHHHHHHHHHHHTCSEEECCC
T ss_pred HHHHHHHHcCCCEEEecccchhhhCCCHHHHHHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHHHhCCCEEEeCC
Confidence 4677788899998876554 3455667788888887653 4566653322 444 34556679999993321
Q ss_pred cccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEEC
Q psy1056 401 FIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMG 459 (590)
Q Consensus 401 ~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g 459 (590)
. |...|.++..+...++.. ...+||-++|||++..|+.+.+.+||+-+...
T Consensus 155 ----G---f~~~gat~~dv~~m~~~v-g~~v~VkaaGGirt~~~al~~i~aGa~RiG~S 205 (220)
T 1ub3_A 155 ----G---FGPRGASLEDVALLVRVA-QGRAQVKAAGGIRDRETALRMLKAGASRLGTS 205 (220)
T ss_dssp ----S---SSSCCCCHHHHHHHHHHH-TTSSEEEEESSCCSHHHHHHHHHTTCSEEEET
T ss_pred ----C---CCCCCCCHHHHHHHHHhh-CCCCeEEEECCCCCHHHHHHHHHCCCcccchh
Confidence 1 222233666666666655 44699999999999999999999999955443
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00049 Score=77.86 Aligned_cols=132 Identities=14% Similarity=0.040 Sum_probs=85.9
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCc-------------------------hhhHHHHHHHHHHhCC-CceEEecc-----
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGN-------------------------SIYQIEMIKFIKKEYP-DMQVIGGN----- 378 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~-------------------------~~~~l~~i~~i~~~~~-~vpvi~g~----- 378 (590)
+..+.+..+.++|.|.|.|+.++|+ .++.++.++.+++.++ +.||.++=
T Consensus 157 ~f~~aA~~a~~aGfDgVeih~a~gy~L~~qFlsp~~N~R~D~yGGs~enR~r~~~ei~~avr~~~g~~~~v~~r~s~~~~ 236 (690)
T 3k30_A 157 WHRNAVRRSIEAGYDIVYVYGAHGYSGVHHFLSKRYNQRTDEYGGSLENRMRLLRELLEDTLDECAGRAAVACRITVEEE 236 (690)
T ss_dssp HHHHHHHHHHHHTCSEEEEEECTTCSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHTTSSEEEEEEECCCC
T ss_pred HHHHHHHHHHHcCCCEEEEcccccchHHHHhCCCccCCCccccCCCHHHHHHHHHHHHHHHHHHhCCCceEEEEECcccc
Confidence 3445677788899999999887766 1245788899998874 56777542
Q ss_pred ---ccCcH----HHHHHHHCCCCEEEEcccccc---cCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHH
Q psy1056 379 ---VLFGY----QPRATLLNFIYQIEMIKFIKK---EYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKA 448 (590)
Q Consensus 379 ---v~s~~----~a~~l~~~Gvd~i~v~~~~~~---~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~ka 448 (590)
..+.+ -++.|.+ |+|++.|+..+.. ....+...++... .+....+..++|||+.|||.++.++.++
T Consensus 237 ~~~g~~~~~~~~~~~~l~~-~~d~~~v~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~pvi~~G~i~~~~~a~~~ 312 (690)
T 3k30_A 237 IDGGITREDIEGVLRELGE-LPDLWDFAMGSWEGDSVTSRFAPEGRQEE---FVAGLKKLTTKPVVGVGRFTSPDAMVRQ 312 (690)
T ss_dssp STTSCCHHHHHHHHHHHTT-SSSEEEEECSCHHHHTCCTTTCCTTTTHH---HHTTSGGGCSSCEEECSCCCCHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHh-hcCEEEEecccccccCCCCccCCccccHH---HHHHHHHHcCCeEEEeCCCCCHHHHHHH
Confidence 11233 3455544 8999988542210 0000111111111 1222223347999999999999999999
Q ss_pred HHcC-CCEEEECccccCC
Q psy1056 449 LALG-ASTAMMGSLLAGT 465 (590)
Q Consensus 449 lalG-A~~v~~g~~l~~~ 465 (590)
|+-| ||+|++|+++.+-
T Consensus 313 l~~g~~d~v~~gR~~~~~ 330 (690)
T 3k30_A 313 IKAGILDLIGAARPSIAD 330 (690)
T ss_dssp HHTTSCSEEEESHHHHHC
T ss_pred HHCCCcceEEEcHHhHhC
Confidence 9998 9999999887643
|
| >1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00055 Score=66.13 Aligned_cols=109 Identities=16% Similarity=0.240 Sum_probs=77.0
Q ss_pred HHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccc
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQV 411 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~ 411 (590)
.+.++..+++|+++++. ++.+ .+.++..++ + +.+++.| +.|++++.++.++|+|++.+-. ...
T Consensus 79 ~d~~~~A~~aGAd~v~~--p~~d----~~v~~~ar~-~-g~~~i~G-v~t~~e~~~A~~~Gad~vk~Fp--a~~------ 141 (224)
T 1vhc_A 79 AEQVVLAKSSGADFVVT--PGLN----PKIVKLCQD-L-NFPITPG-VNNPMAIEIALEMGISAVKFFP--AEA------ 141 (224)
T ss_dssp HHHHHHHHHHTCSEEEC--SSCC----HHHHHHHHH-T-TCCEECE-ECSHHHHHHHHHTTCCEEEETT--TTT------
T ss_pred HHHHHHHHHCCCCEEEE--CCCC----HHHHHHHHH-h-CCCEEec-cCCHHHHHHHHHCCCCEEEEee--Ccc------
Confidence 37788889999999963 3322 344555666 4 6788887 8899999999999999996611 110
Q ss_pred cccchhHHHHHHHHHhcC-CCcEEecCCCCCHHHHHHHHHc-CCCEEEECcccc
Q psy1056 412 IGRNGTAVYRVAEYASRR-GVPVIADGGVQSVGHVMKALAL-GASTAMMGSLLA 463 (590)
Q Consensus 412 ~g~~~~~l~~~~~~~~~~-~v~iia~GGi~~~~di~kalal-GA~~v~~g~~l~ 463 (590)
.| .+..+.+++. .. ++|+++.||| |+..+..-+++ |+++|. |+.+.
T Consensus 142 ~g-G~~~lk~l~~---~~~~ipvvaiGGI-~~~N~~~~l~agga~~v~-gS~i~ 189 (224)
T 1vhc_A 142 SG-GVKMIKALLG---PYAQLQIMPTGGI-GLHNIRDYLAIPNIVACG-GSWFV 189 (224)
T ss_dssp TT-HHHHHHHHHT---TTTTCEEEEBSSC-CTTTHHHHHTSTTBCCEE-ECGGG
T ss_pred cc-CHHHHHHHHh---hCCCCeEEEECCc-CHHHHHHHHhcCCCEEEE-Echhc
Confidence 00 1222333332 33 5999999999 67889999998 999998 88874
|
| >1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00056 Score=66.41 Aligned_cols=121 Identities=12% Similarity=0.047 Sum_probs=78.4
Q ss_pred HHHHHHHcCCcEEEEecC--CCchhhHHHHHHHHHHhCCCceEEe-ccccCcHHHHHHHHCCCCEEEE-cccccccCCCc
Q psy1056 334 RLKLLSQAGVDVVILDSS--QGNSIYQIEMIKFIKKEYPDMQVIG-GNVLFGYQPRATLLNFIYQIEM-IKFIKKEYPDM 409 (590)
Q Consensus 334 ~~~~li~~gad~i~V~~~--~G~~~~~l~~i~~i~~~~~~vpvi~-g~v~s~~~a~~l~~~Gvd~i~v-~~~~~~~~~~~ 409 (590)
.++.+.++|+|.++++.. .. ....+.++.+++. +..+.+ =+..|+.+..+....++|+|-+ ++..+ +
T Consensus 77 ~i~~~~~aGadgv~vh~e~~~~--~~~~~~~~~i~~~--g~~~gv~~~p~t~~e~~~~~~~~~D~v~~msv~pg-----~ 147 (230)
T 1tqj_A 77 YVEDFAKAGADIISVHVEHNAS--PHLHRTLCQIREL--GKKAGAVLNPSTPLDFLEYVLPVCDLILIMSVNPG-----F 147 (230)
T ss_dssp THHHHHHHTCSEEEEECSTTTC--TTHHHHHHHHHHT--TCEEEEEECTTCCGGGGTTTGGGCSEEEEESSCC-------
T ss_pred HHHHHHHcCCCEEEECcccccc--hhHHHHHHHHHHc--CCcEEEEEeCCCcHHHHHHHHhcCCEEEEEEeccc-----c
Confidence 457788899999998865 33 2345667777665 443332 2445666665555669998854 44333 2
Q ss_pred cc--ccc-chhHHHHHHHHHhc--CCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccC
Q psy1056 410 QV--IGR-NGTAVYRVAEYASR--RGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAG 464 (590)
Q Consensus 410 ~~--~g~-~~~~l~~~~~~~~~--~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~ 464 (590)
.+ +.. ...-+.++++.... .++||.++|||.. ..+.++...|||.+.+|+.+..
T Consensus 148 ggq~~~~~~~~~i~~lr~~~~~~~~~~~I~v~GGI~~-~~~~~~~~aGad~vvvGSai~~ 206 (230)
T 1tqj_A 148 GGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKP-NNTWQVLEAGANAIVAGSAVFN 206 (230)
T ss_dssp --CCCCGGGHHHHHHHHHHHHHHTCCCEEEEESSCCT-TTTHHHHHHTCCEEEESHHHHT
T ss_pred CCccCcHHHHHHHHHHHHHHHhcCCCCcEEEECCcCH-HHHHHHHHcCCCEEEECHHHHC
Confidence 22 111 33345555554421 2699999999976 8888899999999999998854
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00098 Score=75.87 Aligned_cols=131 Identities=11% Similarity=0.045 Sum_probs=84.4
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCc------------------------hhhHHHHHHHHHHhCC-CceEEecc------
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGN------------------------SIYQIEMIKFIKKEYP-DMQVIGGN------ 378 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~------------------------~~~~l~~i~~i~~~~~-~vpvi~g~------ 378 (590)
...+.+..+.++|.|.|.|+.++|+ .++.++.++.+++..+ +.||.++=
T Consensus 150 ~f~~aA~~a~~aGfDgVEih~a~gyLl~qFlsp~~N~R~D~yGGs~enR~r~~~eiv~avr~~vg~~~pv~vrls~~~~~ 229 (729)
T 1o94_A 150 FYVDAAKRSRDAGFDIVYVYGAHSYLPLQFLNPYYNKRTDKYGGSLENRARFWLETLEKVKHAVGSDCAIATRFGVDTVY 229 (729)
T ss_dssp HHHHHHHHHHHTTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHTTTSEEEEEEEEECSS
T ss_pred HHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCcCcCCCCHHHHhHHHHHHHHHHHHHhCCCceEEEEEccccCc
Confidence 4445677788899999999976631 1335788899998874 67877542
Q ss_pred ---ccC-c----HHHHHHHHCCCCEEEEccccc-----cc-CCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHH
Q psy1056 379 ---VLF-G----YQPRATLLNFIYQIEMIKFIK-----KE-YPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGH 444 (590)
Q Consensus 379 ---v~s-~----~~a~~l~~~Gvd~i~v~~~~~-----~~-~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~d 444 (590)
..+ . +-++.|. .|+|++.|+.... .. ...+.+-++. +..+....+..++|||+.|||.++.+
T Consensus 230 ~~~G~~~~~~~~~~~~~l~-~~~d~~~v~~g~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~pvi~~G~i~~~~~ 305 (729)
T 1o94_A 230 GPGQIEAEVDGQKFVEMAD-SLVDMWDITIGDIAEWGEDAGPSRFYQQGHT---IPWVKLVKQVSKKPVLGVGRYTDPEK 305 (729)
T ss_dssp CTTSCCTTTHHHHHHHHHG-GGCSEEEEEECCSTTGGGTSCCTTTCCTTTT---HHHHHHHHTTCSSCEECCSCCCCHHH
T ss_pred CCCCCCchHHHHHHHHHHH-hhcCEEEEeeecccccccccCCccccCcccc---HHHHHHHHHHCCCEEEEeCCCCCHHH
Confidence 112 2 2344444 4899998843221 00 0001111111 22223333345799999999999999
Q ss_pred HHHHHHcC-CCEEEECccccC
Q psy1056 445 VMKALALG-ASTAMMGSLLAG 464 (590)
Q Consensus 445 i~kalalG-A~~v~~g~~l~~ 464 (590)
+.++|+.| ||+|++|++|..
T Consensus 306 a~~~l~~g~aD~V~~gR~~l~ 326 (729)
T 1o94_A 306 MIEIVTKGYADIIGCARPSIA 326 (729)
T ss_dssp HHHHHHTTSCSBEEESHHHHH
T ss_pred HHHHHHCCCCCEEEeCchhhc
Confidence 99999998 999999987754
|
| >1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00078 Score=65.26 Aligned_cols=123 Identities=16% Similarity=0.084 Sum_probs=75.9
Q ss_pred HHHHHHHHcCCcEEEEecC--CCchhhHHHHHHHHHHhCCCceEEec-cccCcHHHHHHHHCCCCEEEE-cccccccCCC
Q psy1056 333 NRLKLLSQAGVDVVILDSS--QGNSIYQIEMIKFIKKEYPDMQVIGG-NVLFGYQPRATLLNFIYQIEM-IKFIKKEYPD 408 (590)
Q Consensus 333 e~~~~li~~gad~i~V~~~--~G~~~~~l~~i~~i~~~~~~vpvi~g-~v~s~~~a~~l~~~Gvd~i~v-~~~~~~~~~~ 408 (590)
+.++.+.++|++.++++.. .+. ...+.++.+++. +..+++- ...+..+..+....++|+|-+ +...+
T Consensus 82 ~~v~~~~~~Gad~v~vh~~~~~~~--~~~~~~~~~~~~--g~~ig~~~~p~t~~e~~~~~~~~~d~vl~~~~~pg----- 152 (230)
T 1rpx_A 82 QRVPDFIKAGADIVSVHCEQSSTI--HLHRTINQIKSL--GAKAGVVLNPGTPLTAIEYVLDAVDLVLIMSVNPG----- 152 (230)
T ss_dssp HHHHHHHHTTCSEEEEECSTTTCS--CHHHHHHHHHHT--TSEEEEEECTTCCGGGGTTTTTTCSEEEEESSCTT-----
T ss_pred HHHHHHHHcCCCEEEEEecCccch--hHHHHHHHHHHc--CCcEEEEeCCCCCHHHHHHHHhhCCEEEEEEEcCC-----
Confidence 5677778899999998876 442 234566666654 4444321 123444444444578998843 22111
Q ss_pred cccc--cc-chhHHHHHHHHHh--cCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCC
Q psy1056 409 MQVI--GR-NGTAVYRVAEYAS--RRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGT 465 (590)
Q Consensus 409 ~~~~--g~-~~~~l~~~~~~~~--~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~ 465 (590)
++|. .+ ....+.++++... ..++|++++|||+ +..+.++++.|||+|.+|+.+..+
T Consensus 153 ~~g~~~~~~~~~~i~~l~~~~~~~~~~~pi~v~GGI~-~~n~~~~~~aGad~vvvgSaI~~a 213 (230)
T 1rpx_A 153 FGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA 213 (230)
T ss_dssp CSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESSCC-TTTHHHHHHHTCCEEEESHHHHTS
T ss_pred CCCccccHHHHHHHHHHHHHHHhcCCCceEEEECCCC-HHHHHHHHHcCCCEEEEChhhhCC
Confidence 2221 11 2222344444432 1258999999997 788988999999999999998644
|
| >3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00024 Score=69.80 Aligned_cols=76 Identities=14% Similarity=0.122 Sum_probs=54.7
Q ss_pred CcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECc
Q psy1056 381 FGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGS 460 (590)
Q Consensus 381 s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~ 460 (590)
..+-|+.+.++|+++|.+.-.. +. ..+.|... ..+.+.++..++|+|+.|||+++.|+.++++.|||.|++|+
T Consensus 37 ~~~~a~~~~~~G~~~i~v~d~~-~~---~~~~~~~~---~~i~~i~~~~~ipvi~~Ggi~~~~~~~~~l~~Gad~V~ig~ 109 (247)
T 3tdn_A 37 LRDWVVEVEKRGAGEILLTSID-RD---GTKSGYDT---EMIRFVRPLTTLPIIASGGAGKMEHFLEAFLRGADKVSINT 109 (247)
T ss_dssp HHHHHHHHHHTTCSEEEEEETT-TT---TCSSCCCH---HHHHHHGGGCCSCEEEESCCCSHHHHHHHHHTTCSEECCSH
T ss_pred HHHHHHHHHHcCCCEEEEEecC-cc---cCCCcccH---HHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCeeehhh
Confidence 4577889999999999652111 11 11112222 23444555568999999999999999999999999999998
Q ss_pred ccc
Q psy1056 461 LLA 463 (590)
Q Consensus 461 ~l~ 463 (590)
.+.
T Consensus 110 ~~l 112 (247)
T 3tdn_A 110 AAV 112 (247)
T ss_dssp HHH
T ss_pred HHh
Confidence 765
|
| >1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00063 Score=65.28 Aligned_cols=108 Identities=19% Similarity=0.158 Sum_probs=75.0
Q ss_pred HHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCcccc
Q psy1056 333 NRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVI 412 (590)
Q Consensus 333 e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~ 412 (590)
+.++..+++|+++++. ++.+ .+.++..+ .+ +.+++.| +.|++++.++.++|+|++.+-. ... .
T Consensus 79 d~~~~A~~aGAd~v~~--p~~d----~~v~~~~~-~~-g~~~i~G-~~t~~e~~~A~~~Gad~v~~Fp--a~~------~ 141 (214)
T 1wbh_A 79 QQLAEVTEAGAQFAIS--PGLT----EPLLKAAT-EG-TIPLIPG-ISTVSELMLGMDYGLKEFKFFP--AEA------N 141 (214)
T ss_dssp HHHHHHHHHTCSCEEE--SSCC----HHHHHHHH-HS-SSCEEEE-ESSHHHHHHHHHTTCCEEEETT--TTT------T
T ss_pred HHHHHHHHcCCCEEEc--CCCC----HHHHHHHH-Hh-CCCEEEe-cCCHHHHHHHHHCCCCEEEEec--Ccc------c
Confidence 6788889999999974 3322 23333333 34 6788876 8999999999999999996611 111 0
Q ss_pred ccchhHHHHHHHHHhcC-CCcEEecCCCCCHHHHHHHHHc-CCCEEEECcccc
Q psy1056 413 GRNGTAVYRVAEYASRR-GVPVIADGGVQSVGHVMKALAL-GASTAMMGSLLA 463 (590)
Q Consensus 413 g~~~~~l~~~~~~~~~~-~v~iia~GGi~~~~di~kalal-GA~~v~~g~~l~ 463 (590)
| .+. .+....... ++|+++.||| |+..+..-+++ |+++|. |+.+.
T Consensus 142 g-G~~---~lk~i~~~~~~ipvvaiGGI-~~~n~~~~l~agg~~~v~-gS~i~ 188 (214)
T 1wbh_A 142 G-GVK---ALQAIAGPFSQVRFCPTGGI-SPANYRDYLALKSVLCIG-GSWLV 188 (214)
T ss_dssp T-HHH---HHHHHHTTCTTCEEEEBSSC-CTTTHHHHHTSTTBSCEE-EGGGS
T ss_pred c-CHH---HHHHHhhhCCCCeEEEECCC-CHHHHHHHHhcCCCeEEE-ecccc
Confidence 0 122 233333333 6999999999 67889999998 999988 88884
|
| >3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli} PDB: 3gnd_A* 3gkf_O | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0022 Score=64.27 Aligned_cols=113 Identities=16% Similarity=0.103 Sum_probs=72.7
Q ss_pred HHHHHHcCCcEEEEecCCCc--hhhHHHHHHHHHH---hCCCceEEecc-----c-cCc----HHHHHHHHCCCCEEEEc
Q psy1056 335 LKLLSQAGVDVVILDSSQGN--SIYQIEMIKFIKK---EYPDMQVIGGN-----V-LFG----YQPRATLLNFIYQIEMI 399 (590)
Q Consensus 335 ~~~li~~gad~i~V~~~~G~--~~~~l~~i~~i~~---~~~~vpvi~g~-----v-~s~----~~a~~l~~~Gvd~i~v~ 399 (590)
++..++.|++.+.++..-|. ....++.+..+++ .+ ++|+|+-. + .+. ..++.+.++|+|+|+++
T Consensus 131 ve~Av~~GAdaV~~~i~~Gs~~~~~~l~~i~~v~~~a~~~-GlpvIie~~~G~~~~~d~e~i~~aariA~elGAD~VKt~ 209 (295)
T 3glc_A 131 MDDAVRLNSCAVAAQVYIGSEYEHQSIKNIIQLVDAGMKV-GMPTMAVTGVGKDMVRDQRYFSLATRIAAEMGAQIIKTY 209 (295)
T ss_dssp HHHHHHTTCSEEEEEECTTSTTHHHHHHHHHHHHHHHHTT-TCCEEEEECC----CCSHHHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHCCCCEEEEEEECCCCcHHHHHHHHHHHHHHHHHc-CCEEEEECCCCCccCCCHHHHHHHHHHHHHhCCCEEEeC
Confidence 45567899999887765443 2334554444443 34 68888611 1 122 25567778999999664
Q ss_pred ccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHH-----HHHHHHHcCCCEEEECccccCC
Q psy1056 400 KFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVG-----HVMKALALGASTAMMGSLLAGT 465 (590)
Q Consensus 400 ~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~-----di~kalalGA~~v~~g~~l~~~ 465 (590)
.. . ..+.++. ....+||+++||+..+. .+..|+..||+++.+|+.+...
T Consensus 210 ~t-~-------------e~~~~vv---~~~~vPVv~~GG~~~~~~~~l~~v~~ai~aGA~Gv~vGRnI~q~ 263 (295)
T 3glc_A 210 YV-E-------------KGFERIV---AGCPVPIVIAGGKKLPEREALEMCWQAIDQGASGVDMGRNIFQS 263 (295)
T ss_dssp CC-T-------------TTHHHHH---HTCSSCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEESHHHHTS
T ss_pred CC-H-------------HHHHHHH---HhCCCcEEEEECCCCCHHHHHHHHHHHHHhCCeEEEeHHHHhcC
Confidence 21 1 1223333 33469999999999643 4667889999999999887544
|
| >1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0025 Score=61.62 Aligned_cols=120 Identities=15% Similarity=0.057 Sum_probs=75.2
Q ss_pred HHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEec-cccCc-HHHHHHHHC--CCCEEEE-cccccccCCC
Q psy1056 334 RLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGG-NVLFG-YQPRATLLN--FIYQIEM-IKFIKKEYPD 408 (590)
Q Consensus 334 ~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g-~v~s~-~~a~~l~~~--Gvd~i~v-~~~~~~~~~~ 408 (590)
.++.+.++|+|.++++..+... .+.+.++.+++. +..+++- +..+. +..+.+.+. ++|+|-+ ++..+
T Consensus 79 ~i~~~~~agad~v~vH~~~~~~-~~~~~~~~i~~~--g~~igv~~~p~t~~e~~~~~~~~~~~~d~vl~~sv~pg----- 150 (228)
T 1h1y_A 79 YVEPLAKAGASGFTFHIEVSRD-NWQELIQSIKAK--GMRPGVSLRPGTPVEEVFPLVEAENPVELVLVMTVEPG----- 150 (228)
T ss_dssp GHHHHHHHTCSEEEEEGGGCTT-THHHHHHHHHHT--TCEEEEEECTTSCGGGGHHHHHSSSCCSEEEEESSCTT-----
T ss_pred HHHHHHHcCCCEEEECCCCccc-HHHHHHHHHHHc--CCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEeecCC-----
Confidence 4666777999999887754332 124566666665 4544431 22344 445555565 9999965 33322
Q ss_pred ccc--ccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccC
Q psy1056 409 MQV--IGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAG 464 (590)
Q Consensus 409 ~~~--~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~ 464 (590)
+++ +.+ ....+.++++... ++|++++|||.. ..+.+++..|||.+.+|+.+..
T Consensus 151 ~~g~~~~~~~l~~i~~~~~~~~--~~pi~v~GGI~~-~ni~~~~~aGaD~vvvGsai~~ 206 (228)
T 1h1y_A 151 FGGQKFMPEMMEKVRALRKKYP--SLDIEVDGGLGP-STIDVAASAGANCIVAGSSIFG 206 (228)
T ss_dssp CSSCCCCGGGHHHHHHHHHHCT--TSEEEEESSCST-TTHHHHHHHTCCEEEESHHHHT
T ss_pred CCcccCCHHHHHHHHHHHHhcC--CCCEEEECCcCH-HHHHHHHHcCCCEEEECHHHHC
Confidence 222 222 2233334443321 689999999976 7888899999999999998854
|
| >1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=97.23 E-value=0.001 Score=64.26 Aligned_cols=108 Identities=10% Similarity=0.118 Sum_probs=74.6
Q ss_pred HHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCcccc
Q psy1056 333 NRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVI 412 (590)
Q Consensus 333 e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~ 412 (590)
+.++..+++|+++++. .+-+ .+.++. ++.+ +.+++.| +.|++++.++.++|+|++.+-. ... . .
T Consensus 89 d~~~~A~~aGAd~v~~--p~~d----~~v~~~-~~~~-g~~~i~G-~~t~~e~~~A~~~Gad~vk~FP--a~~---~--~ 152 (225)
T 1mxs_A 89 SMFAAVEAAGAQFVVT--PGIT----EDILEA-GVDS-EIPLLPG-ISTPSEIMMGYALGYRRFKLFP--AEI---S--G 152 (225)
T ss_dssp HHHHHHHHHTCSSEEC--SSCC----HHHHHH-HHHC-SSCEECE-ECSHHHHHHHHTTTCCEEEETT--HHH---H--T
T ss_pred HHHHHHHHCCCCEEEe--CCCC----HHHHHH-HHHh-CCCEEEe-eCCHHHHHHHHHCCCCEEEEcc--Ccc---c--c
Confidence 6788889999999973 3322 233333 3344 6788876 8999999999999999996511 000 0 0
Q ss_pred ccchhHHHHHHHHHhcC-CCcEEecCCCCCHHHHHHHHH-cCCCEEEECcccc
Q psy1056 413 GRNGTAVYRVAEYASRR-GVPVIADGGVQSVGHVMKALA-LGASTAMMGSLLA 463 (590)
Q Consensus 413 g~~~~~l~~~~~~~~~~-~v~iia~GGi~~~~di~kala-lGA~~v~~g~~l~ 463 (590)
| +..+....... ++|+++.||| |+..+..-++ .||++|. |+.+.
T Consensus 153 G-----~~~lk~i~~~~~~ipvvaiGGI-~~~N~~~~l~~~Ga~~v~-gSai~ 198 (225)
T 1mxs_A 153 G-----VAAIKAFGGPFGDIRFCPTGGV-NPANVRNYMALPNVMCVG-TTWML 198 (225)
T ss_dssp H-----HHHHHHHHTTTTTCEEEEBSSC-CTTTHHHHHHSTTBCCEE-ECTTS
T ss_pred C-----HHHHHHHHhhCCCCeEEEECCC-CHHHHHHHHhccCCEEEE-Echhc
Confidence 1 12233333333 6999999999 6778988999 5999999 88884
|
| >3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0021 Score=70.12 Aligned_cols=85 Identities=13% Similarity=0.051 Sum_probs=58.3
Q ss_pred cccCcHHHHHHHHCC---CCEEEE-cccccccCCCc--cccccchhHHHHHHHHHh---cCCCcEEecCCCCCHHHHHHH
Q psy1056 378 NVLFGYQPRATLLNF---IYQIEM-IKFIKKEYPDM--QVIGRNGTAVYRVAEYAS---RRGVPVIADGGVQSVGHVMKA 448 (590)
Q Consensus 378 ~v~s~~~a~~l~~~G---vd~i~v-~~~~~~~~~~~--~~~g~~~~~l~~~~~~~~---~~~v~iia~GGi~~~~di~ka 448 (590)
.+.+.++++++.+.| +|||-+ .+..+..+.+. ...| +..+.++.+.+. ..++|++|-||| ++.++.+.
T Consensus 114 S~ht~eea~~A~~~G~~~aDYv~~Gpvf~T~tK~~~~~~~~G--~~~l~~i~~~~~~~~~~~iPvvAIGGI-~~~ni~~v 190 (540)
T 3nl6_A 114 SVGFPEEVDELSKMGPDMVDYIGVGTLFPTLTKKNPKKAPMG--TAGAIRVLDALERNNAHWCRTVGIGGL-HPDNIERV 190 (540)
T ss_dssp EECSHHHHHHHHHTCC--CCEEEESCCSCCCCCC----CCCH--HHHHHHHHHHHHHTTCTTCEEEEESSC-CTTTHHHH
T ss_pred ECCCHHHHHHHHHcCCCCCCEEEEcCCCCCCCCCCcCCCCCC--HHHHHHHHHHHHhhccCCCCEEEEcCC-CHHHHHHH
Confidence 555889999999999 999976 23333222111 1122 333444444432 136999999999 88999999
Q ss_pred HH--------cCCCEEEECccccCC
Q psy1056 449 LA--------LGASTAMMGSLLAGT 465 (590)
Q Consensus 449 la--------lGA~~v~~g~~l~~~ 465 (590)
++ .||++|.+++.+..+
T Consensus 191 ~~~~~~~g~~~GadgvAVvsaI~~a 215 (540)
T 3nl6_A 191 LYQCVSSNGKRSLDGICVVSDIIAS 215 (540)
T ss_dssp HHHCBCTTSSCBCSCEEESHHHHTC
T ss_pred HHhhcccccccCceEEEEeHHHhcC
Confidence 98 899999999988754
|
| >1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0023 Score=63.39 Aligned_cols=117 Identities=16% Similarity=0.157 Sum_probs=75.2
Q ss_pred HHHHHHHHcCCcEEEEec--CCCchhhHHHHHHHHHH---hCCCceEEecccc---------CcHH----HHHHHHCCCC
Q psy1056 333 NRLKLLSQAGVDVVILDS--SQGNSIYQIEMIKFIKK---EYPDMQVIGGNVL---------FGYQ----PRATLLNFIY 394 (590)
Q Consensus 333 e~~~~li~~gad~i~V~~--~~G~~~~~l~~i~~i~~---~~~~vpvi~g~v~---------s~~~----a~~l~~~Gvd 394 (590)
..++..++.|++.+.+.. ..++...+++.++.+++ .+ ++|+|+-.-. +.+. ++.+.++|+|
T Consensus 96 ~~ve~Ai~~Ga~~v~~~~nig~~~~~~~~~~~~~v~~~~~~~-~~~vIi~~~~~G~~~~~~~s~~~i~~a~~~a~~~GAD 174 (263)
T 1w8s_A 96 CSVEEAVSLGASAVGYTIYPGSGFEWKMFEELARIKRDAVKF-DLPLVVESFPRGGKVVNETAPEIVAYAARIALELGAD 174 (263)
T ss_dssp SCHHHHHHTTCSEEEEEECTTSTTHHHHHHHHHHHHHHHHHH-TCCEEEEECCCSTTCCCTTCHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHCCCCEEEEEEecCCcCHHHHHHHHHHHHHHHHHc-CCeEEEEeeCCCCccccCCCHHHHHHHHHHHHHcCCC
Confidence 345667889999887655 44444445555555543 34 6777752111 2232 3567789999
Q ss_pred EEEEcccccccCCCccccccchhHHHHHHHHHhcCCC-cEEecCCCC--CHHHHHHHH----HcCCCEEEECccccCC
Q psy1056 395 QIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGV-PVIADGGVQ--SVGHVMKAL----ALGASTAMMGSLLAGT 465 (590)
Q Consensus 395 ~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v-~iia~GGi~--~~~di~kal----alGA~~v~~g~~l~~~ 465 (590)
+|.++. + . +.+.+.++.+.+ +. ||+++|||+ +..|..+.+ ..||+++.+|+.+...
T Consensus 175 ~vkt~~--~-~---------~~e~~~~~~~~~---~~~pV~asGGi~~~~~~~~l~~i~~~~~aGA~GvsvgraI~~~ 237 (263)
T 1w8s_A 175 AMKIKY--T-G---------DPKTFSWAVKVA---GKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQR 237 (263)
T ss_dssp EEEEEC--C-S---------SHHHHHHHHHHT---TTSCEEEECCSCCSSHHHHHHHHHHHHHTTCCEEEESHHHHTS
T ss_pred EEEEcC--C-C---------CHHHHHHHHHhC---CCCeEEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEehhhcCC
Confidence 996651 1 1 333444454443 45 999999999 777766655 8999999999988544
|
| >3ndo_A Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; HET: GOL; 1.25A {Mycobacterium smegmatis} PDB: 3ng3_A | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0086 Score=57.65 Aligned_cols=119 Identities=17% Similarity=0.081 Sum_probs=80.9
Q ss_pred HHHHHHHHcCCcEEEEecC-----CCchhhHHHHHHHHHHhCCCc--eEEec--cc---cCcHHH----HHHHHCCCCEE
Q psy1056 333 NRLKLLSQAGVDVVILDSS-----QGNSIYQIEMIKFIKKEYPDM--QVIGG--NV---LFGYQP----RATLLNFIYQI 396 (590)
Q Consensus 333 e~~~~li~~gad~i~V~~~-----~G~~~~~l~~i~~i~~~~~~v--pvi~g--~v---~s~~~a----~~l~~~Gvd~i 396 (590)
..++..++.|++-+-+..+ .|+...+.+.+..+++..++. .+|+- .. .+.+.. +.+.++|+|+|
T Consensus 84 ~E~~~Ai~~GAdEIDmVinig~lk~g~~~~v~~ei~~v~~a~~~~~lKvIiEt~~L~~~~t~eei~~a~~ia~~aGADfV 163 (231)
T 3ndo_A 84 TEAELAVAAGATEIDMVIDVGAALAGDLDAVSADITAVRKAVRAATLKVIVESAALLEFSGEPLLADVCRVARDAGADFV 163 (231)
T ss_dssp HHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCHHHHHHHTCHHHHHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHcCCCEEEEEeehHhhhcccHHHHHHHHHHHHHHccCCceEEEEECcccCCCCCHHHHHHHHHHHHHHCcCEE
Confidence 3577788899998766543 366667788888888876443 44431 11 133333 44556999999
Q ss_pred EEcccccccCCCcc-ccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEEC
Q psy1056 397 EMIKFIKKEYPDMQ-VIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMG 459 (590)
Q Consensus 397 ~v~~~~~~~~~~~~-~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g 459 (590)
+.| . ||. ..|.|+..+...++... .+++|-++|||||..|+.+-+.+||+-+...
T Consensus 164 KTS----T---Gf~~~~gAt~edv~lm~~~v~-~~v~VKaaGGIrt~~~a~~~i~aGa~RiGtS 219 (231)
T 3ndo_A 164 KTS----T---GFHPSGGASVQAVEIMARTVG-ERLGVKASGGIRTAEQAAAMLDAGATRLGLS 219 (231)
T ss_dssp ECC----C---SCCTTCSCCHHHHHHHHHHHT-TTSEEEEESSCCSHHHHHHHHHTTCSEEEES
T ss_pred EcC----C---CCCCCCCCCHHHHHHHHHHhC-CCceEEEeCCCCCHHHHHHHHHhcchhcccc
Confidence 332 1 132 22337777777777664 4699999999999999999999999976443
|
| >3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0016 Score=62.76 Aligned_cols=121 Identities=14% Similarity=0.147 Sum_probs=75.4
Q ss_pred HHHHHHHcCCcEEEEecCCCch-hhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEE-cccccccC-----
Q psy1056 334 RLKLLSQAGVDVVILDSSQGNS-IYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEM-IKFIKKEY----- 406 (590)
Q Consensus 334 ~~~~li~~gad~i~V~~~~G~~-~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v-~~~~~~~~----- 406 (590)
.++.+.+.|.|++.|-.+.|-+ +.+.+.++.+++ + ++|++. ...+.+.. ..|+|++.+ +.-+++..
T Consensus 23 ~~~~~~~~GtD~i~vGGs~gvt~~~~~~~v~~ik~-~-~~Pvvl-fp~~~~~v----~~gaD~~l~pslln~~~~~~i~g 95 (228)
T 3vzx_A 23 QLEILCESGTDAVIIGGSDGVTEDNVLRMMSKVRR-F-LVPCVL-EVSAIEAI----VPGFDLYFIPSVLNSKNADWIVG 95 (228)
T ss_dssp HHHHHHTSSCSEEEECCCSCCCHHHHHHHHHHHTT-S-SSCEEE-ECSCGGGC----CSCCSEEEEEEETTBSSGGGTTH
T ss_pred HHHHHHHcCCCEEEECCcCCCCHHHHHHHHHHhhc-c-CCCEEE-eCCCHHHc----cccCCEEEEeeecCCCCcchhhh
Confidence 4555678899999987777654 557788888887 5 788875 44444322 357777765 00000000
Q ss_pred ----------------------------C------------------------------C---ccccccchhHHHHHHHH
Q psy1056 407 ----------------------------P------------------------------D---MQVIGRNGTAVYRVAEY 425 (590)
Q Consensus 407 ----------------------------~------------------------------~---~~~~g~~~~~l~~~~~~ 425 (590)
+ + ..+-|. ......+++.
T Consensus 96 ~~~~a~~~~g~~~~~~e~i~~gYivv~p~s~~~~~~~a~~~~~~e~~~~~a~~a~~~g~~~VYld~sG~-~~~~~~i~~i 174 (228)
T 3vzx_A 96 MHQKAMKEYGELMSMEEIVAEGYCIANPDCKAAALTEADADLNMDDIVAYARVSELLQLPIFYLEYSGV-LGDIEAVKKT 174 (228)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEEECCSSSHHHHHTTBCCCCCHHHHHHHHHHHHHTTCSEEEEECTTS-CCCHHHHHHH
T ss_pred HHHHHHHHcCCCCcccceeeeEEEEECCCCcceeeecccCCCCHHHHHHHHHHHHHcCCCEEEecCCCC-cCCHHHHHHH
Confidence 0 0 001122 0111223333
Q ss_pred HhcC-CCcEEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 426 ASRR-GVPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 426 ~~~~-~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
.+.. ++|++..|||+++.++.+++ .|||.|.+|+++.
T Consensus 175 ~~~~~~~Pv~vGGGI~t~e~a~~~~-~gAD~VVVGSa~v 212 (228)
T 3vzx_A 175 KAVLETSTLFYGGGIKDAETAKQYA-EHADVIVVGNAVY 212 (228)
T ss_dssp HHHCSSSEEEEESSCCSHHHHHHHH-TTCSEEEECTHHH
T ss_pred HHhcCCCCEEEeCCCCCHHHHHHHH-hCCCEEEEChHHh
Confidence 3334 58999999999999999887 7999999999883
|
| >2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.004 Score=59.35 Aligned_cols=107 Identities=21% Similarity=0.152 Sum_probs=76.8
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEe--ccccCcHHHHHHHHCCCCEEEEcccccccC
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIG--GNVLFGYQPRATLLNFIYQIEMIKFIKKEY 406 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~--g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~ 406 (590)
.+..+.++.+.+.|++.+++...... ..+.++.+++.+ ++++++ +.+.+.+.++.+.++|+|+| +....
T Consensus 19 ~~~~~~~~~~~~~G~~~i~l~~~~~~---~~~~i~~i~~~~-~~~l~vg~g~~~~~~~i~~a~~~Gad~V----~~~~~- 89 (212)
T 2v82_A 19 DEALAHVGAVIDAGFDAVEIPLNSPQ---WEQSIPAIVDAY-GDKALIGAGTVLKPEQVDALARMGCQLI----VTPNI- 89 (212)
T ss_dssp HHHHHHHHHHHHHTCCEEEEETTSTT---HHHHHHHHHHHH-TTTSEEEEECCCSHHHHHHHHHTTCCEE----ECSSC-
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCChh---HHHHHHHHHHhC-CCCeEEEeccccCHHHHHHHHHcCCCEE----EeCCC-
Confidence 34566788888999999999766432 245667777766 455554 66778899999999999999 21111
Q ss_pred CCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEE
Q psy1056 407 PDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMM 458 (590)
Q Consensus 407 ~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~ 458 (590)
. .++.+.++..+.+++. |+.|+.++.+|..+|||++.+
T Consensus 90 --------~----~~~~~~~~~~g~~~~~--g~~t~~e~~~a~~~G~d~v~v 127 (212)
T 2v82_A 90 --------H----SEVIRRAVGYGMTVCP--GCATATEAFTALEAGAQALKI 127 (212)
T ss_dssp --------C----HHHHHHHHHTTCEEEC--EECSHHHHHHHHHTTCSEEEE
T ss_pred --------C----HHHHHHHHHcCCCEEe--ecCCHHHHHHHHHCCCCEEEE
Confidence 1 1223344455778877 499999999999999999975
|
| >1vcv_A Probable deoxyribose-phosphate aldolase; DERA, hyperthermophIle, archaea, lyase; 2.00A {Pyrobaculum aerophilum} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0091 Score=57.38 Aligned_cols=120 Identities=8% Similarity=-0.055 Sum_probs=80.1
Q ss_pred HHHHHHHHcCCcEEEEecC-----CCchhhHHHHHHHHHHhCC--CceEEecccc-CcHH----HHHHHHCCCCEEEEcc
Q psy1056 333 NRLKLLSQAGVDVVILDSS-----QGNSIYQIEMIKFIKKEYP--DMQVIGGNVL-FGYQ----PRATLLNFIYQIEMIK 400 (590)
Q Consensus 333 e~~~~li~~gad~i~V~~~-----~G~~~~~l~~i~~i~~~~~--~vpvi~g~v~-s~~~----a~~l~~~Gvd~i~v~~ 400 (590)
..++. ++.|++-+-+... .|+...+.+.+..+++..+ .+++|+-... +.+. ++.+.++|+|+|+.|-
T Consensus 71 ~E~~~-i~~GAdEID~Vinig~~~~g~~~~v~~ei~~v~~a~~~~~lKvIlEt~~Lt~eei~~a~~ia~eaGADfVKTST 149 (226)
T 1vcv_A 71 ALVSR-LAEVADEIDVVAPIGLVKSRRWAEVRRDLISVVGAAGGRVVKVITEEPYLRDEERYTLYDIIAEAGAHFIKSST 149 (226)
T ss_dssp HHHHH-HTTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCGGGCCHHHHHHHHHHHHHHTCSEEECCC
T ss_pred HHHHH-HHCCCCEEEEecchhhhcCCCHHHHHHHHHHHHHHHcCCCceEEEeccCCCHHHHHHHHHHHHHcCCCEEEeCC
Confidence 35667 8999998765543 4666667888888888653 3566653333 4443 3456669999994431
Q ss_pred cccccCCCcc----------ccccchhHHHHHHHHHhc--CCCcEEecCCCCCHHHHHHHHHc---CCC----EEEECc
Q psy1056 401 FIKKEYPDMQ----------VIGRNGTAVYRVAEYASR--RGVPVIADGGVQSVGHVMKALAL---GAS----TAMMGS 460 (590)
Q Consensus 401 ~~~~~~~~~~----------~~g~~~~~l~~~~~~~~~--~~v~iia~GGi~~~~di~kalal---GA~----~v~~g~ 460 (590)
. |. ..|.|+..+...++..+. .+++|-++|||||..|+.+-+.+ ||+ -+...+
T Consensus 150 G-------f~~~~~~~~~~~~~gAt~~dv~lm~~~i~~~g~~v~vKaaGGirt~~~al~~i~a~~~Ga~~~~fRiGtS~ 221 (226)
T 1vcv_A 150 G-------FAEEAYAARQGNPVHSTPERAAAIARYIKEKGYRLGVKMAGGIRTREQAKAIVDAIGWGEDPARVRLGTST 221 (226)
T ss_dssp S-------CCCHHHHHHTTCCSSCCHHHHHHHHHHHHHHTCCCEEEEESSCCSHHHHHHHHHHHCSCSCTTTEEEEESC
T ss_pred C-------CCccccccccCCCCCCCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHHHHCCCCcCCceEecCc
Confidence 1 22 223366666655655222 34999999999999999999999 999 665443
|
| >3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0034 Score=58.57 Aligned_cols=35 Identities=26% Similarity=0.358 Sum_probs=31.8
Q ss_pred cCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 428 RRGVPVIADGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 428 ~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
..++|+||.|+|++..|+.+||..||++|..|..-
T Consensus 148 ~~~~PiIaGGlI~~~edv~~al~aGA~aVsTs~~~ 182 (192)
T 3kts_A 148 KLHIPVIAGGLIETSEQVNQVIASGAIAVTTSNKH 182 (192)
T ss_dssp HHCCCEEEESSCCSHHHHHHHHTTTEEEEEECCGG
T ss_pred hcCCCEEEECCcCCHHHHHHHHHcCCeEEEeCCHH
Confidence 34799999999999999999999999999998654
|
| >3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0021 Score=62.03 Aligned_cols=59 Identities=8% Similarity=0.123 Sum_probs=41.0
Q ss_pred HHHHHHHHcCCcEEEEecCCCch-hhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEE
Q psy1056 333 NRLKLLSQAGVDVVILDSSQGNS-IYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 333 e~~~~li~~gad~i~V~~~~G~~-~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v 398 (590)
+.++.+.+.|+|++.|-.+.|-+ +.+.+.++.+|+ + ++|++. ...+.+.. ..|+|++.+
T Consensus 27 ~~l~~~~~~GtDaI~vGgs~gvt~~~~~~~v~~ik~-~-~~Piil-~p~~~~~~----~~gaD~il~ 86 (235)
T 3w01_A 27 DDLDAICMSQTDAIMIGGTDDVTEDNVIHLMSKIRR-Y-PLPLVL-EISNIESV----MPGFDFYFV 86 (235)
T ss_dssp HHHHHHHTSSCSEEEECCSSCCCHHHHHHHHHHHTT-S-CSCEEE-ECCCSTTC----CTTCSEEEE
T ss_pred HHHHHHHHcCCCEEEECCcCCcCHHHHHHHHHHhcC-c-CCCEEE-ecCCHHHh----hcCCCEEEE
Confidence 45566788999999998877765 557888888888 4 788875 33333222 347777765
|
| >2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9 | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0045 Score=60.83 Aligned_cols=127 Identities=15% Similarity=0.036 Sum_probs=79.0
Q ss_pred hHHHHHHHHHHcCCcEEEEecCC---------------Cch-hhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCC
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQ---------------GNS-IYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFI 393 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~---------------G~~-~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gv 393 (590)
.....++.+.++|+..+ +|.+. |.. ....+.++..++. +.. -+--+.++++|+.+.++|+
T Consensus 109 ~~g~~Le~lk~~Gf~Gv-~N~ptvglidG~fr~~LEE~gm~~~~eve~I~~A~~~--gL~-Ti~~v~~~eeA~amA~agp 184 (286)
T 2p10_A 109 VMSTFLRELKEIGFAGV-QNFPTVGLIDGLFRQNLEETGMSYAQEVEMIAEAHKL--DLL-TTPYVFSPEDAVAMAKAGA 184 (286)
T ss_dssp CHHHHHHHHHHHTCCEE-EECSCGGGCCHHHHHHHHHTTCCHHHHHHHHHHHHHT--TCE-ECCEECSHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhCCceE-EECCCcccccchhhhhHhhcCCCHHHHHHHHHHHHHC--CCe-EEEecCCHHHHHHHHHcCC
Confidence 34456688999999998 77651 111 1224555555554 433 3346779999999999999
Q ss_pred CEEEEcccccccCCCcccccc--c----hhHHHHHHHHHhc--CCCcEEecC-CCCCHHHHHHHHHc--CCCEEEECccc
Q psy1056 394 YQIEMIKFIKKEYPDMQVIGR--N----GTAVYRVAEYASR--RGVPVIADG-GVQSVGHVMKALAL--GASTAMMGSLL 462 (590)
Q Consensus 394 d~i~v~~~~~~~~~~~~~~g~--~----~~~l~~~~~~~~~--~~v~iia~G-Gi~~~~di~kalal--GA~~v~~g~~l 462 (590)
|+|.+-+..|.. +.-|++. + ++.+.++.++++. .++.+++.| ||.+|.|+.+++.+ ||+.+..++.+
T Consensus 185 DiI~~h~glT~g--glIG~~~avs~~~~~e~i~~i~~a~~~vnpdvivLc~gGpIstpeDv~~~l~~t~G~~G~~gASsi 262 (286)
T 2p10_A 185 DILVCHMGLTTG--GAIGARSGKSMDDCVSLINECIEAARTIRDDIIILSHGGPIANPEDARFILDSCQGCHGFYGASSM 262 (286)
T ss_dssp SEEEEECSCC-----------CCCHHHHHHHHHHHHHHHHHHCSCCEEEEESTTCCSHHHHHHHHHHCTTCCEEEESHHH
T ss_pred CEEEECCCCCCC--CcccCCCcccHHHhHHHHHHHHHHHHHhCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEeehhh
Confidence 999553322211 1333332 2 1223334444433 257777755 99999999999999 99999888766
|
| >1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00092 Score=65.58 Aligned_cols=77 Identities=21% Similarity=0.124 Sum_probs=54.7
Q ss_pred CcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECc
Q psy1056 381 FGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGS 460 (590)
Q Consensus 381 s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~ 460 (590)
..+.++.+.++|+|+|.++-. ... . .+ ....+..+++.++..++|+|+.|||++..++.+++++|||+|.+|+
T Consensus 33 ~~~~a~~~~~~Gad~i~v~d~-~~~---~--~~-~~~~~~~i~~i~~~~~iPvi~~Ggi~~~~~~~~~~~~Gad~V~lg~ 105 (252)
T 1ka9_F 33 PVEAARAYDEAGADELVFLDI-SAT---H--EE-RAILLDVVARVAERVFIPLTVGGGVRSLEDARKLLLSGADKVSVNS 105 (252)
T ss_dssp HHHHHHHHHHHTCSCEEEEEC-CSS---T--TC-HHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHHTCSEEEECH
T ss_pred HHHHHHHHHHcCCCEEEEEcC-Ccc---c--cC-ccccHHHHHHHHHhCCCCEEEECCcCCHHHHHHHHHcCCCEEEECh
Confidence 346778889999999855311 101 0 01 2222334555555668999999999999999999999999999998
Q ss_pred cccC
Q psy1056 461 LLAG 464 (590)
Q Consensus 461 ~l~~ 464 (590)
.+..
T Consensus 106 ~~l~ 109 (252)
T 1ka9_F 106 AAVR 109 (252)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7653
|
| >1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0052 Score=60.46 Aligned_cols=119 Identities=12% Similarity=0.029 Sum_probs=87.9
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEecccc-CcHHHHHHHHCCCCEEEEcccccccCCC
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVL-FGYQPRATLLNFIYQIEMIKFIKKEYPD 408 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~-s~~~a~~l~~~Gvd~i~v~~~~~~~~~~ 408 (590)
+..+.++...++|+..+++.+..+...+..+.++.+++.. ++|++.|+.. +..++..+.++|||+|-+-. ..
T Consensus 66 ~p~~~A~~~~~~GA~~isvlt~~~~f~G~~~~l~~i~~~v-~lPvl~kdfI~d~~qi~~a~~~GAD~VlL~~---~~--- 138 (254)
T 1vc4_A 66 DPVEAALAYARGGARAVSVLTEPHRFGGSLLDLKRVREAV-DLPLLRKDFVVDPFMLEEARAFGASAALLIV---AL--- 138 (254)
T ss_dssp CHHHHHHHHHHTTCSEEEEECCCSSSCCCHHHHHHHHHHC-CSCEEEESCCCSHHHHHHHHHTTCSEEEEEH---HH---
T ss_pred CHHHHHHHHHHcCCCEEEEecchhhhccCHHHHHHHHHhc-CCCEEECCcCCCHHHHHHHHHcCCCEEEECc---cc---
Confidence 4568889999999999999776665555677888888887 8999988754 77789999999999995410 00
Q ss_pred ccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 409 MQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 409 ~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
+ + ..+.++.+.+...++.++. -+++..++.+|+.+||+.+.++..+.
T Consensus 139 l-----~-~~l~~l~~~a~~lGl~~lv--ev~~~~E~~~a~~~gad~IGvn~~~l 185 (254)
T 1vc4_A 139 L-----G-ELTGAYLEEARRLGLEALV--EVHTERELEIALEAGAEVLGINNRDL 185 (254)
T ss_dssp H-----G-GGHHHHHHHHHHHTCEEEE--EECSHHHHHHHHHHTCSEEEEESBCT
T ss_pred h-----H-HHHHHHHHHHHHCCCeEEE--EECCHHHHHHHHHcCCCEEEEccccC
Confidence 0 1 2233444444445666665 56788999999999999999987764
|
| >3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0036 Score=60.61 Aligned_cols=120 Identities=18% Similarity=0.135 Sum_probs=77.0
Q ss_pred HHHHHHHcCCcEEEEecCC-CchhhHHHHHHHHHHhCCCceEE-eccccCcHHHHHHHHCCCCEEEE-cccccccCCCcc
Q psy1056 334 RLKLLSQAGVDVVILDSSQ-GNSIYQIEMIKFIKKEYPDMQVI-GGNVLFGYQPRATLLNFIYQIEM-IKFIKKEYPDMQ 410 (590)
Q Consensus 334 ~~~~li~~gad~i~V~~~~-G~~~~~l~~i~~i~~~~~~vpvi-~g~v~s~~~a~~l~~~Gvd~i~v-~~~~~~~~~~~~ 410 (590)
.++.+.++|++.+.++... .. ...+.++.+++. +..+. .=+..|+.+..+-...++|.|-+ +++.+ |.
T Consensus 72 ~i~~~~~aGAd~itvh~Ea~~~--~~~~~i~~i~~~--G~k~gv~lnp~tp~~~~~~~l~~~D~VlvmsV~pG-----fg 142 (231)
T 3ctl_A 72 YIAQLARAGADFITLHPETING--QAFRLIDEIRRH--DMKVGLILNPETPVEAMKYYIHKADKITVMTVDPG-----FA 142 (231)
T ss_dssp THHHHHHHTCSEEEECGGGCTT--THHHHHHHHHHT--TCEEEEEECTTCCGGGGTTTGGGCSEEEEESSCTT-----CS
T ss_pred HHHHHHHcCCCEEEECcccCCc--cHHHHHHHHHHc--CCeEEEEEECCCcHHHHHHHHhcCCEEEEeeeccC-----cC
Confidence 4577889999999987643 32 345677777776 33322 22555554433333348998854 44332 33
Q ss_pred cc--cc-chhHHHHHHHHHhc--CCCcEEecCCCCCHHHHHHHHHcCCCEEEEC-cccc
Q psy1056 411 VI--GR-NGTAVYRVAEYASR--RGVPVIADGGVQSVGHVMKALALGASTAMMG-SLLA 463 (590)
Q Consensus 411 ~~--g~-~~~~l~~~~~~~~~--~~v~iia~GGi~~~~di~kalalGA~~v~~g-~~l~ 463 (590)
|. .. +..-+.++++.... .+++|.++|||. ...+.++...|||.+++| +.+.
T Consensus 143 gQ~f~~~~l~kI~~lr~~~~~~~~~~~I~VdGGI~-~~~~~~~~~aGAd~~V~G~saif 200 (231)
T 3ctl_A 143 GQPFIPEMLDKLAELKAWREREGLEYEIEVDGSCN-QATYEKLMAAGADVFIVGTSGLF 200 (231)
T ss_dssp SCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESCCS-TTTHHHHHHHTCCEEEECTTTTG
T ss_pred CccccHHHHHHHHHHHHHHhccCCCceEEEECCcC-HHHHHHHHHcCCCEEEEccHHHh
Confidence 32 21 33334556655532 358999999995 677889999999999999 9883
|
| >2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.017 Score=59.08 Aligned_cols=65 Identities=17% Similarity=0.284 Sum_probs=50.1
Q ss_pred HHHHHHHHcCCcEEEEecC--CCch--hhHHHHHHHHHHhCCCceEEe-ccccCcHHHHHHHHCCCCEEEE
Q psy1056 333 NRLKLLSQAGVDVVILDSS--QGNS--IYQIEMIKFIKKEYPDMQVIG-GNVLFGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 333 e~~~~li~~gad~i~V~~~--~G~~--~~~l~~i~~i~~~~~~vpvi~-g~v~s~~~a~~l~~~Gvd~i~v 398 (590)
+.+..+.+.|+|.+.++.. .|+. ....+.+..+++.. ++|+++ |++.+++++.+++++|+|++.+
T Consensus 121 ~~a~~~~~~GaD~i~v~g~~~GG~~g~~~~~~ll~~i~~~~-~iPViaaGGI~~~~~~~~al~~GAdgV~v 190 (332)
T 2z6i_A 121 ALAKRMEKIGADAVIAEGMEAGGHIGKLTTMTLVRQVATAI-SIPVIAAGGIADGEGAAAGFMLGAEAVQV 190 (332)
T ss_dssp HHHHHHHHTTCSCEEEECTTSSEECCSSCHHHHHHHHHHHC-SSCEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHcCCCEEEEECCCCCCCCCCccHHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCCCEEEe
Confidence 4566778899999999753 2221 23457888888877 789885 6777899999999999999977
|
| >3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0037 Score=60.73 Aligned_cols=124 Identities=14% Similarity=-0.031 Sum_probs=79.5
Q ss_pred HHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCC-------Cc-eEEeccccCcHHHHHHHHCCCCEEEE-cccc
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYP-------DM-QVIGGNVLFGYQPRATLLNFIYQIEM-IKFI 402 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~-------~v-pvi~g~v~s~~~a~~l~~~Gvd~i~v-~~~~ 402 (590)
...++.+.++|+|.+.++..... ...+.++++++.++ +. .-+.=+..|+.+..+-...++|+|-+ +++.
T Consensus 82 ~~~i~~~~~aGAd~itvH~ea~~--~~~~~i~~i~~~~~~~~~~~~g~~~gv~l~p~Tp~~~l~~~l~~~D~vlvMsv~p 159 (237)
T 3cu2_A 82 LEVAKAVVANGANLVTLQLEQYH--DFALTIEWLAKQKTTYANQVYPVLIGACLCPETPISELEPYLDQIDVIQLLTLDP 159 (237)
T ss_dssp HHHHHHHHHTTCSEEEEETTCTT--SHHHHHHHHTTCEEEETTEEEECEEEEEECTTSCGGGGTTTTTTCSEEEEESEET
T ss_pred HHHHHHHHHcCCCEEEEecCCcc--cHHHHHHHHHhcccccccccCCceEEEEEeCCChHHHHHHHhhcCceeeeeeecc
Confidence 46788889999999988876542 24556666665411 11 22222445665554444468998855 4433
Q ss_pred cccCCCcccccc---chhHHHHHHHHHhc--CCCcEEecCCCCCHHHHHHHHH--cCCCEEEECcccc
Q psy1056 403 KKEYPDMQVIGR---NGTAVYRVAEYASR--RGVPVIADGGVQSVGHVMKALA--LGASTAMMGSLLA 463 (590)
Q Consensus 403 ~~~~~~~~~~g~---~~~~l~~~~~~~~~--~~v~iia~GGi~~~~di~kala--lGA~~v~~g~~l~ 463 (590)
+ |.|.-. ...-+.++++.... .++||.++||| |...+.++.. .|||.+++|+.+.
T Consensus 160 g-----fggq~f~~~~l~ki~~lr~~~~~~~~~~~I~vdGGI-~~~~~~~~~~~~aGad~~VvGSaIf 221 (237)
T 3cu2_A 160 R-----NGTKYPSELILDRVIQVEKRLGNRRVEKLINIDGSM-TLELAKYFKQGTHQIDWLVSGSALF 221 (237)
T ss_dssp T-----TTEECCHHHHHHHHHHHHHHHGGGGGGCEEEEESSC-CHHHHHHHHHSSSCCCCEEECGGGG
T ss_pred C-----cCCeecChhHHHHHHHHHHHHHhcCCCceEEEECCc-CHHHHHHHHHhCCCCcEEEEeeHHh
Confidence 2 322111 23334555555532 25899999999 5888999999 9999999999884
|
| >1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1 | Back alignment and structure |
|---|
Probab=96.94 E-value=0.003 Score=63.45 Aligned_cols=89 Identities=13% Similarity=-0.003 Sum_probs=68.2
Q ss_pred HHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecC
Q psy1056 358 QIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADG 437 (590)
Q Consensus 358 ~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~G 437 (590)
+.+.++.+++.+|+.++++ ++.+.++++++.++|+|+|.+.. . ++..+.++.+... .++++.++|
T Consensus 195 i~~ai~~~r~~~~~~kI~v-ev~tlee~~eA~~aGaD~I~ld~----~---------~~e~l~~~v~~~~-~~~~I~ASG 259 (296)
T 1qap_A 195 VRQAVEKAFWLHPDVPVEV-EVENLDELDDALKAGADIIMLDN----F---------NTDQMREAVKRVN-GQARLEVSG 259 (296)
T ss_dssp HHHHHHHHHHHSTTSCEEE-EESSHHHHHHHHHTTCSEEEESS----C---------CHHHHHHHHHTTC-TTCCEEECC
T ss_pred HHHHHHHHHHhCCCCcEEE-EeCCHHHHHHHHHcCCCEEEECC----C---------CHHHHHHHHHHhC-CCCeEEEEC
Confidence 4677888888887655655 88899999999999999994421 1 3344444444332 258999999
Q ss_pred CCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 438 GVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 438 Gi~~~~di~kalalGA~~v~~g~~l 462 (590)
|| |...+..-...|||.+.+|++.
T Consensus 260 GI-t~~~i~~~a~~GvD~isvGsli 283 (296)
T 1qap_A 260 NV-TAETLREFAETGVDFISVGALT 283 (296)
T ss_dssp CS-CHHHHHHHHHTTCSEEECSHHH
T ss_pred CC-CHHHHHHHHHcCCCEEEEeHHH
Confidence 99 9999999999999999999854
|
| >2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.03 Score=57.08 Aligned_cols=65 Identities=22% Similarity=0.219 Sum_probs=48.7
Q ss_pred HHHHHHHHcCCcEEEEecCC--Cch----hhHHHHHHHHHHhCCCceEEe-ccccCcHHHHHHHHCCCCEEEE
Q psy1056 333 NRLKLLSQAGVDVVILDSSQ--GNS----IYQIEMIKFIKKEYPDMQVIG-GNVLFGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 333 e~~~~li~~gad~i~V~~~~--G~~----~~~l~~i~~i~~~~~~vpvi~-g~v~s~~~a~~l~~~Gvd~i~v 398 (590)
+.+..+.+.|+|.+.++... |+. ....+.+..+++.. ++|+++ |++.+.+++.++..+|+|++.+
T Consensus 129 ~~a~~~~~~GaD~i~v~g~~~GG~~G~~~~~~~~~l~~v~~~~-~iPviaaGGI~~~~~v~~al~~GAdgV~v 200 (328)
T 2gjl_A 129 RHALKAERLGVDAVSIDGFECAGHPGEDDIPGLVLLPAAANRL-RVPIIASGGFADGRGLVAALALGADAINM 200 (328)
T ss_dssp HHHHHHHHTTCSEEEEECTTCSBCCCSSCCCHHHHHHHHHTTC-CSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHcCCCEEEEECCCCCcCCCCccccHHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 44556778999999987532 231 13467788887766 789885 6666899999999999999977
|
| >3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.003 Score=66.14 Aligned_cols=67 Identities=49% Similarity=0.760 Sum_probs=53.0
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCchHHHHHHHHHhhhcCCCcccccccccchHHHHHHHHHhccccccc
Q psy1056 139 KYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGLRVG 206 (590)
Q Consensus 139 ~~~~~~l~~~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~im~~~~~~~~~~~~a~~~m~~~~~v~ 206 (590)
.+++..++++|+|+|++|+++++.....+.++++++.++ ..++-.++.+.+..+.+.+..+|+|+||
T Consensus 146 ~e~~~~lveaGvdvIvldta~G~~~~~~e~I~~ik~~~~-i~Vi~g~V~t~e~A~~a~~aGAD~I~vG 212 (400)
T 3ffs_A 146 IERAKLLVEAGVDVIVLDSAHGHSLNIIRTLKEIKSKMN-IDVIVGNVVTEEATKELIENGADGIKVG 212 (400)
T ss_dssp CHHHHHHHHHTCSEEEECCSCCSBHHHHHHHHHHHTTCC-CEEEEEEECSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCcccHHHHHHHHHhcCC-CeEEEeecCCHHHHHHHHHcCCCEEEEe
Confidence 467788899999999999999998888999999887553 3355566666777778888888888776
|
| >3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0027 Score=62.60 Aligned_cols=69 Identities=13% Similarity=0.003 Sum_probs=49.3
Q ss_pred HHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 385 PRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 385 a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
++...++|...+++.... +. .....+..+++.+. .++|+++.|||+++.|+.+++.+|||.|.+|+.+.
T Consensus 192 a~~gad~G~~lV~LD~~~-~~--------v~~e~V~~I~~~~~-~~iPV~vGGGIrs~Eda~~ll~aGAD~VVVGSAav 260 (286)
T 3vk5_A 192 LHVARAFGFHMVYLYSRN-EH--------VPPEVVRHFRKGLG-PDQVLFVSGNVRSGRQVTEYLDSGADYVGFAGALE 260 (286)
T ss_dssp HHHHHHTTCSEEEEECSS-SC--------CCHHHHHHHHHHSC-TTCEEEEESSCCSHHHHHHHHHTTCSEEEESGGGS
T ss_pred HHHHHHcCCCEEEEcCCC-Cc--------CCHHHHHHHHHhcC-CCCCEEEEeCCCCHHHHHHHHHcCCCEEEECchhh
Confidence 344557888888664322 11 13344444544321 06999999999999999999999999999999884
|
| >1hg3_A Triosephosphate isomerase; thermostability, tetrameric; 2.7A {Pyrococcus woesei} SCOP: c.1.1.1 | Back alignment and structure |
|---|
Probab=96.84 E-value=0.016 Score=55.78 Aligned_cols=122 Identities=15% Similarity=0.097 Sum_probs=78.2
Q ss_pred HHHHHHcCCcEEEEecCC--CchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCcccc
Q psy1056 335 LKLLSQAGVDVVILDSSQ--GNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVI 412 (590)
Q Consensus 335 ~~~li~~gad~i~V~~~~--G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~ 412 (590)
+..+.+.|++.+.+-.++ -....+.+.++...+. +...++ .|++.++.+.+...+.+.|- ...+- .-|.
T Consensus 81 ~~~l~~~Ga~~VllghseRR~~~~e~~~k~~~A~~~--GL~~iv-cVge~~e~~~~~~~~~~iIa---yep~w---aiGt 151 (225)
T 1hg3_A 81 PEAVKEAGAVGTLLNHSENRMILADLEAAIRRAEEV--GLMTMV-CSNNPAVSAAVAALNPDYVA---VEPPE---LIGT 151 (225)
T ss_dssp HHHHHHTTCCEEEESCGGGCCBHHHHHHHHHHHHHH--TCEEEE-EESSHHHHHHHHTTCCSEEE---ECCTT---TTTT
T ss_pred HHHHHHcCCCEEEECcchhcCCHHHHHHHHHHHHHC--CCEEEE-EeCCHHHHHHHhcCCCCEEE---EeChh---hhcc
Confidence 355778899998876554 1112234444444444 444444 67777777788888888662 22232 3445
Q ss_pred c----c-chhHHHHHHHHHhc--CCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCC
Q psy1056 413 G----R-NGTAVYRVAEYASR--RGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGT 465 (590)
Q Consensus 413 g----~-~~~~l~~~~~~~~~--~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~ 465 (590)
| . +++.+.+..+..+. .+++++..|||.++.++..+...|+|++.+|+.+..+
T Consensus 152 G~~v~t~~~d~~~~~~~~ir~~~~~~~ilyggsV~~~n~~~~~~~~~vDG~LVG~a~l~a 211 (225)
T 1hg3_A 152 GIPVSKAKPEVITNTVELVKKVNPEVKVLCGAGISTGEDVKKAIELGTVGVLLASGVTKA 211 (225)
T ss_dssp SCCTTTSCTHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEESHHHHTC
T ss_pred CCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCcHHHHHHHHhCCCCEEEeCHHHHCC
Confidence 5 2 34323333322221 2589999999999999999999999999999887543
|
| >1w0m_A TIM, triosephosphate isomerase; glycolysis, gluconeogenesis; 2.5A {Thermoproteus tenax} SCOP: c.1.1.1 | Back alignment and structure |
|---|
Probab=96.83 E-value=0.016 Score=55.79 Aligned_cols=121 Identities=21% Similarity=0.177 Sum_probs=77.4
Q ss_pred HHHHHcCCcEEEEecCCC--chhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccccc
Q psy1056 336 KLLSQAGVDVVILDSSQG--NSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIG 413 (590)
Q Consensus 336 ~~li~~gad~i~V~~~~G--~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g 413 (590)
..+.+.|++.+.+-.++- ....+.+.++...+. +...++ .|++.++.+.+...+.+.|- ...+- .-|.|
T Consensus 79 ~~l~~~Ga~~VllghseRR~~~~e~~~k~~~A~~~--GL~~iv-cVge~~e~~~~~~~~~~iIa---yep~w---aiGtG 149 (226)
T 1w0m_A 79 ENIKEAGGSGVILNHSEAPLKLNDLARLVAKAKSL--GLDVVV-CAPDPRTSLAAAALGPHAVA---VEPPE---LIGTG 149 (226)
T ss_dssp HHHHHHTCCEEEECCTTSCCBHHHHHHHHHHHHHT--TCEEEE-EESSHHHHHHHHHTCCSEEE---ECCGG---GTTTS
T ss_pred HHHHHcCCCEEEEeeeeccCCHHHHHHHHHHHHHC--CCEEEE-EeCCHHHHHHHhcCCCCEEE---EcChh---hhccC
Confidence 456788999988866552 112233444444333 444444 67777777788888888662 22222 34455
Q ss_pred ----c-chhHHHHHHHHHhc--CCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCC
Q psy1056 414 ----R-NGTAVYRVAEYASR--RGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGT 465 (590)
Q Consensus 414 ----~-~~~~l~~~~~~~~~--~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~ 465 (590)
. +++.+.+..+..+. .+++++..|||.++.++..+...|+|++.+|+.+..+
T Consensus 150 ~~v~t~~~d~~~~~~~~ir~~~~~~~ilyggsV~~~n~~~~~~~~giDG~LVG~a~l~a 208 (226)
T 1w0m_A 150 RAVSRYKPEAIVETVGLVSRHFPEVSVITGAGIESGDDVAAALRLGTRGVLLASAAVKA 208 (226)
T ss_dssp CCHHHHCHHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHTC
T ss_pred CCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCcHHHHHHHHhCCCCEEEECHHHHCC
Confidence 2 33323333222221 2589999999999999999999999999999887543
|
| >1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0036 Score=62.50 Aligned_cols=90 Identities=18% Similarity=0.086 Sum_probs=67.6
Q ss_pred HHHHHHHHHHhCCC-ceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEec
Q psy1056 358 QIEMIKFIKKEYPD-MQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIAD 436 (590)
Q Consensus 358 ~l~~i~~i~~~~~~-vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~ 436 (590)
+...++..++.+|. .++.+ ++.+.++++++.++|+|+|-+.. . .++.+.++.+..+. ++|+.++
T Consensus 182 i~~av~~ar~~~~~~~~IgV-ev~t~eea~eA~~aGaD~I~ld~----~---------~~~~~k~av~~v~~-~ipi~As 246 (286)
T 1x1o_A 182 VGEAVRRAKARAPHYLKVEV-EVRSLEELEEALEAGADLILLDN----F---------PLEALREAVRRVGG-RVPLEAS 246 (286)
T ss_dssp HHHHHHHHHHHSCTTSCEEE-EESSHHHHHHHHHHTCSEEEEES----C---------CHHHHHHHHHHHTT-SSCEEEE
T ss_pred HHHHHHHHHHhCCCCCEEEE-EeCCHHHHHHHHHcCCCEEEECC----C---------CHHHHHHHHHHhCC-CCeEEEE
Confidence 35678888888865 46666 88899999999999999993311 1 33344444444432 5999999
Q ss_pred CCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 437 GGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 437 GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
||| |...+..-.+.|+|++.+|+...
T Consensus 247 GGI-t~eni~~~a~tGvD~IsVgs~~~ 272 (286)
T 1x1o_A 247 GNM-TLERAKAAAEAGVDYVSVGALTH 272 (286)
T ss_dssp SSC-CHHHHHHHHHHTCSEEECTHHHH
T ss_pred cCC-CHHHHHHHHHcCCCEEEEcHHHc
Confidence 999 78999999999999999998663
|
| >2a4a_A Deoxyribose-phosphate aldolase; lyase, TIM beta/alpha barrel, DEOC, DERA, structur genomics, structural genomics consortium, SGC; 1.84A {Plasmodium yoelii yoelii} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0051 Score=60.95 Aligned_cols=115 Identities=14% Similarity=0.057 Sum_probs=75.5
Q ss_pred HHHHHHHHcCCcEEEEecC-----CCchh---hHHHHHHHHHHhCCCce--EEecccc--CcH----HHHHHHHCCCCEE
Q psy1056 333 NRLKLLSQAGVDVVILDSS-----QGNSI---YQIEMIKFIKKEYPDMQ--VIGGNVL--FGY----QPRATLLNFIYQI 396 (590)
Q Consensus 333 e~~~~li~~gad~i~V~~~-----~G~~~---~~l~~i~~i~~~~~~vp--vi~g~v~--s~~----~a~~l~~~Gvd~i 396 (590)
..++..++.|++-|-+... .|+.. .+.+.+..+++..++.| +|+-... +.+ .++.+.++|+|+|
T Consensus 110 ~E~~~Av~~GAdEIDmVinig~lksg~~~~~~~v~~eI~~v~~a~~~~~lKVIlEt~~L~d~e~i~~A~~ia~eaGADfV 189 (281)
T 2a4a_A 110 NDTEKALDDGADEIDLVINYKKIIENTDEGLKEATKLTQSVKKLLTNKILKVIIEVGELKTEDLIIKTTLAVLNGNADFI 189 (281)
T ss_dssp HHHHHHHHHTCSEEEEECCHHHHHHSHHHHHHHHHHHHHHHHTTCTTSEEEEECCHHHHCSHHHHHHHHHHHHTTTCSEE
T ss_pred HHHHHHHHcCCCEEEEecchHhhhCCChhHHHHHHHHHHHHHHHhcCCceEEEEecccCCcHHHHHHHHHHHHHhCCCEE
Confidence 4567778889998765543 34555 66778888887764444 3432221 333 3456777999999
Q ss_pred EEcccccccCCCccccccchhHHHHHHHHHh---------cCCCcEEecCCCCCHHHHHHHHHcCCC
Q psy1056 397 EMIKFIKKEYPDMQVIGRNGTAVYRVAEYAS---------RRGVPVIADGGVQSVGHVMKALALGAS 454 (590)
Q Consensus 397 ~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~---------~~~v~iia~GGi~~~~di~kalalGA~ 454 (590)
+.| - ||...|.|+..+...++..+ ..+++|-++|||||..|+.+-+.+||+
T Consensus 190 KTS----T---Gf~~~gAT~edv~lm~~~v~~~~~~~~~tg~~vgVKaaGGIrt~e~al~~i~aga~ 249 (281)
T 2a4a_A 190 KTS----T---GKVQINATPSSVEYIIKAIKEYIKNNPEKNNKIGLKVSGGISDLNTASHYILLARR 249 (281)
T ss_dssp ECC----C---SCSSCCCCHHHHHHHHHHHHHHHHHCGGGTTCCEEEEESSCCSHHHHHHHHHHHHH
T ss_pred EeC----C---CCCCCCCCHHHHHHHHHHHHHhhcccccCCCCceEEEeCCCCCHHHHHHHHHHhhh
Confidence 332 1 13322336666555555542 346999999999999999999999876
|
| >2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0023 Score=63.31 Aligned_cols=76 Identities=18% Similarity=0.199 Sum_probs=54.0
Q ss_pred CcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECc
Q psy1056 381 FGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGS 460 (590)
Q Consensus 381 s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~ 460 (590)
..+.++.+.++|+++|.++- .... ..+.|... ..+.+.++..++|+|+.|||++..++.+++.+|||+|.+|+
T Consensus 32 ~~~~a~~~~~~Ga~~i~v~d-~~~~---~~~~g~~~---~~i~~i~~~~~iPvi~~ggi~~~~~i~~~~~~Gad~v~lg~ 104 (266)
T 2w6r_A 32 LRDWVVEVEKRGAGEILLTS-IDRD---GTKSGYDT---EMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADKALAAS 104 (266)
T ss_dssp HHHHHHHHHHHTCSEEEEEE-TTTS---SCSSCCCH---HHHHHHGGGCCSCEEEESCCCSTHHHHHHHHHTCSEEECCC
T ss_pred HHHHHHHHHHCCCCEEEEEe-cCcc---cCCCcccH---HHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCcHhhhhH
Confidence 45678888999999996621 1111 11112222 33444555568999999999999999999999999999998
Q ss_pred ccc
Q psy1056 461 LLA 463 (590)
Q Consensus 461 ~l~ 463 (590)
.+.
T Consensus 105 ~~~ 107 (266)
T 2w6r_A 105 VFH 107 (266)
T ss_dssp CC-
T ss_pred HHH
Confidence 876
|
| >1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0022 Score=62.84 Aligned_cols=75 Identities=12% Similarity=0.120 Sum_probs=53.0
Q ss_pred cHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcc
Q psy1056 382 GYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSL 461 (590)
Q Consensus 382 ~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~ 461 (590)
.+-++.+.++|+|+|.+..-. .. +. + ....+..+.+.++..++|+++.|||+++.++.++++.|||.|++|+.
T Consensus 33 ~~~a~~~~~~Gad~i~v~d~~-~~---~~--~-~~~~~~~i~~i~~~~~ipvi~~ggI~~~~~~~~~~~~Gad~V~lg~~ 105 (253)
T 1thf_D 33 VELGKFYSEIGIDELVFLDIT-AS---VE--K-RKTMLELVEKVAEQIDIPFTVGGGIHDFETASELILRGADKVSINTA 105 (253)
T ss_dssp HHHHHHHHHTTCCEEEEEESS-CS---SS--H-HHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHTTCSEEEESHH
T ss_pred HHHHHHHHHcCCCEEEEECCc-hh---hc--C-CcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEChH
Confidence 456788899999998553111 11 11 1 11222334445555679999999999999999999999999999986
Q ss_pred cc
Q psy1056 462 LA 463 (590)
Q Consensus 462 l~ 463 (590)
+.
T Consensus 106 ~l 107 (253)
T 1thf_D 106 AV 107 (253)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0017 Score=64.64 Aligned_cols=91 Identities=12% Similarity=0.058 Sum_probs=68.3
Q ss_pred HHHHHHHHHHhCCC-ceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhc--CCCcEE
Q psy1056 358 QIEMIKFIKKEYPD-MQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASR--RGVPVI 434 (590)
Q Consensus 358 ~l~~i~~i~~~~~~-vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~--~~v~ii 434 (590)
..+.++.+++.+|. .++++ ++.+.++++++.++|+|+|.+.. . .+..+.++.+.+.. .++|+.
T Consensus 168 ~~~ai~~~r~~~~~~~~i~v-ev~tlee~~~A~~aGaD~I~ld~----~---------~~~~l~~~v~~l~~~~~~~~i~ 233 (273)
T 2b7n_A 168 LKSFLTHARKNLPFTAKIEI-ECESFEEAKNAMNAGADIVMCDN----L---------SVLETKEIAAYRDAHYPFVLLE 233 (273)
T ss_dssp HHHHHHHHGGGSCTTCCEEE-EESSHHHHHHHHHHTCSEEEEET----C---------CHHHHHHHHHHHHHHCTTCEEE
T ss_pred HHHHHHHHHHhCCCCceEEE-EcCCHHHHHHHHHcCCCEEEECC----C---------CHHHHHHHHHHhhccCCCcEEE
Confidence 35678888888865 46666 88899999999999999994421 1 23334444444332 248999
Q ss_pred ecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 435 ADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 435 a~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
++||| |...+..-.+.|||.+.+|+.+.
T Consensus 234 AsGGI-~~~ni~~~~~aGaD~i~vGs~i~ 261 (273)
T 2b7n_A 234 ASGNI-SLESINAYAKSGVDAISVGALIH 261 (273)
T ss_dssp EESSC-CTTTHHHHHTTTCSEEECTHHHH
T ss_pred EECCC-CHHHHHHHHHcCCcEEEEcHHhc
Confidence 99999 89999999999999999998764
|
| >3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} SCOP: c.1.2.3 PDB: 3exs_A* 3ext_A | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0095 Score=57.26 Aligned_cols=122 Identities=16% Similarity=-0.006 Sum_probs=78.0
Q ss_pred HHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhC-CCceEE--eccccCcHHHHHHHHCCCCEEEEcccccccCCCccc
Q psy1056 335 LKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEY-PDMQVI--GGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQV 411 (590)
Q Consensus 335 ~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~-~~vpvi--~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~ 411 (590)
...+.+.|++.+.++...|. ..+...++.+++.. +...+. +-...+.+.++.+.+.|++.+.+....... .
T Consensus 75 ~~~~~~~Gad~vtVH~~~g~-~~l~~a~~~~~~~g~~~~~~~Vt~lts~~~~~~~~~~~~~~~~~v~~~a~~~~---~-- 148 (221)
T 3exr_A 75 AKNNAVRGADWMTCICSATI-PTMKAARKAIEDINPDKGEIQVELYGDWTYDQAQQWLDAGISQAIYHQSRDAL---L-- 148 (221)
T ss_dssp HHHHHTTTCSEEEEETTSCH-HHHHHHHHHHHHHCTTTCEEEEECCSSCCHHHHHHHHHTTCCEEEEECCHHHH---H--
T ss_pred HHHHHHcCCCEEEEeccCCH-HHHHHHHHHHHhcCCCcceEEEEEcCCCCHHHHHHHHcCCHHHHHHHHHHhcC---C--
Confidence 34478899999999887663 22344555555542 112222 223336778888888999877442111111 1
Q ss_pred ccc--chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccC
Q psy1056 412 IGR--NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAG 464 (590)
Q Consensus 412 ~g~--~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~ 464 (590)
.|. ++.-+..+++.+. .+.+|..+||| ++.++..+...|||.+++|+++..
T Consensus 149 ~Gvv~s~~e~~~ir~~~~-~~~~i~v~gGI-~~~~~~~~~~aGad~~VvG~~I~~ 201 (221)
T 3exr_A 149 AGETWGEKDLNKVKKLIE-MGFRVSVTGGL-SVDTLKLFEGVDVFTFIAGRGITE 201 (221)
T ss_dssp HTCCCCHHHHHHHHHHHH-HTCEEEEESSC-CGGGGGGGTTCCCSEEEECHHHHT
T ss_pred CccccCHHHHHHHHHhhc-CCceEEEECCC-CHHHHHHHHHCCCCEEEECchhhC
Confidence 133 4444555666553 35889999999 667888899999999999998753
|
| >3tjl_A NADPH dehydrogenase; OLD yellow enzyme, flavin mononucleotide, TIM barrel, NADPH oxidoreductase, enone reductase; HET: FMN; 1.50A {Scheffersomyces stipitis cbs 6054} PDB: 3upw_A* 4df2_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0026 Score=66.62 Aligned_cols=130 Identities=12% Similarity=0.027 Sum_probs=81.9
Q ss_pred HHHHHHHHHHcCCcEEEEecCCC--------------------c----hhhHHHHHHHHHHhCCCceEEecccc------
Q psy1056 331 DKNRLKLLSQAGVDVVILDSSQG--------------------N----SIYQIEMIKFIKKEYPDMQVIGGNVL------ 380 (590)
Q Consensus 331 ~~e~~~~li~~gad~i~V~~~~G--------------------~----~~~~l~~i~~i~~~~~~vpvi~g~v~------ 380 (590)
..+.+....++|.|.|.|+.++| . .++.++.++.+++..+.-||.++=-.
T Consensus 170 ~~~aa~~a~~aGfdgveih~~~GYLl~QFLsp~~N~r~D~YGGs~enr~r~~~ei~~av~~~~~~~~v~~r~~~~~~~~g 249 (407)
T 3tjl_A 170 YTNAAQKAMDAGFDYIELHAAHGYLLDQFLQPCTNQRTDEYGGSIENRARLILELIDHLSTIVGADKIGIRISPWATFQN 249 (407)
T ss_dssp HHHHHHHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCGGG
T ss_pred HHHHHHHHHHhCCCeEEECCccchHHHHhcCccccccCCcCCCChhhChHHHHHHHHHHHHHhCCCeEEEEECcccccCC
Confidence 45667778899999999997552 1 13457888888888754465543111
Q ss_pred -----C--------cHHHHHH---HHCC--CCEEEEcccccccCCCcc-ccccchhHHHHHHHHHhcCCCcEEecCCCCC
Q psy1056 381 -----F--------GYQPRAT---LLNF--IYQIEMIKFIKKEYPDMQ-VIGRNGTAVYRVAEYASRRGVPVIADGGVQS 441 (590)
Q Consensus 381 -----s--------~~~a~~l---~~~G--vd~i~v~~~~~~~~~~~~-~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~ 441 (590)
+ .+-+++| .++| +++|.|+-..+.. ... +-++....+..+++. .+.|+|+.|||.+
T Consensus 250 ~~~~~d~~~~~~~~~~l~~~L~~~~~~G~~l~ylhv~~~~~~~--~~~~~~~~~~~~~~~ir~~---~~~PvI~~Ggi~~ 324 (407)
T 3tjl_A 250 MKAHKDTVHPLTTFSYLVHELQQRADKGQGIAYISVVEPRVSG--NVDVSEEDQAGDNEFVSKI---WKGVILKAGNYSY 324 (407)
T ss_dssp CCGGGSSSCHHHHHHHHHHHHHHHHHTTCCCSEEEEECTTEET--TEECCGGGCCCCSHHHHHH---CCSEEEEESCGGG
T ss_pred CcccccccccHHHHHHHHHHHHhHhhcCCceeEEEEEccccCC--CCcCCccchhHHHHHHHHH---hCCCEEecCCCCC
Confidence 1 2345777 7889 9999774211111 000 000011122334443 3579999999999
Q ss_pred HHHHHHHHHc----CCCEEEECccccCC
Q psy1056 442 VGHVMKALAL----GASTAMMGSLLAGT 465 (590)
Q Consensus 442 ~~di~kalal----GA~~v~~g~~l~~~ 465 (590)
..|+.+++.. +||+|++|+.|..-
T Consensus 325 ~~dA~~~i~~~~~g~aDlVa~GR~~iaN 352 (407)
T 3tjl_A 325 DAPEFKTLKEDIADKRTLVGFSRYFTSN 352 (407)
T ss_dssp GTTTTHHHHHHHTTSSEEEECSHHHHHC
T ss_pred HHHHHHHHHhhccCCCeEEEeChhhhhC
Confidence 8887777775 59999999988654
|
| >3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0057 Score=61.62 Aligned_cols=89 Identities=10% Similarity=0.016 Sum_probs=67.9
Q ss_pred HHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecC
Q psy1056 358 QIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADG 437 (590)
Q Consensus 358 ~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~G 437 (590)
+.+.++.+++..|..++.+ +|-|.+++++++++|+|+|.+.. - ++..+.++.+... .++++.+||
T Consensus 218 i~~Av~~ar~~~p~~kIeV-EVdtldea~eAl~aGaD~I~LDn----~---------~~~~l~~av~~l~-~~v~ieaSG 282 (320)
T 3paj_A 218 IRQAISTAKQLNPGKPVEV-ETETLAELEEAISAGADIIMLDN----F---------SLEMMREAVKINA-GRAALENSG 282 (320)
T ss_dssp HHHHHHHHHHHSTTSCEEE-EESSHHHHHHHHHTTCSEEEEES----C---------CHHHHHHHHHHHT-TSSEEEEES
T ss_pred HHHHHHHHHHhCCCCeEEE-EECCHHHHHHHHHcCCCEEEECC----C---------CHHHHHHHHHHhC-CCCeEEEEC
Confidence 4577888888888777776 89999999999999999994421 1 3334455554443 359999999
Q ss_pred CCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 438 GVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 438 Gi~~~~di~kalalGA~~v~~g~~l 462 (590)
|| |...+..-.+.|+|.+.+|++.
T Consensus 283 GI-t~~~I~~~a~tGVD~isvGalt 306 (320)
T 3paj_A 283 NI-TLDNLKECAETGVDYISVGALT 306 (320)
T ss_dssp SC-CHHHHHHHHTTTCSEEECTHHH
T ss_pred CC-CHHHHHHHHHcCCCEEEECcee
Confidence 99 7888877777899999999753
|
| >2czd_A Orotidine 5'-phosphate decarboxylase; pyrimidine biosynthesis, orotidine 5'-phosphate decarboxylas (ompdecase), structural genomics; 1.60A {Pyrococcus horikoshii} SCOP: c.1.2.3 PDB: 2cz5_A 2cze_A* 2czf_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.012 Score=55.92 Aligned_cols=111 Identities=13% Similarity=0.062 Sum_probs=72.3
Q ss_pred HHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCc-----------HHHHHHHHCCCCEEEEcc
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFG-----------YQPRATLLNFIYQIEMIK 400 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~-----------~~a~~l~~~Gvd~i~v~~ 400 (590)
...++.+.++|+|.+.++...|. +.++.+++.. ++.+.... ... .-++...+.|++++.++.
T Consensus 68 ~~~v~~~~~~Gad~vtvh~~~g~-----~~i~~~~~~~-gv~vl~~t-~~~~~~~~~~~~v~~~~~~a~~~G~~G~~~~~ 140 (208)
T 2czd_A 68 RLIARKVFGAGADYVIVHTFVGR-----DSVMAVKELG-EIIMVVEM-SHPGALEFINPLTDRFIEVANEIEPFGVIAPG 140 (208)
T ss_dssp HHHHHHHHHTTCSEEEEESTTCH-----HHHHHHHTTS-EEEEECCC-CSGGGGTTTGGGHHHHHHHHHHHCCSEEECCC
T ss_pred HHHHHHHHhcCCCEEEEeccCCH-----HHHHHHHHhC-CcEEEEec-CCcchhhHHHHHHHHHHHHHHHhCCcEEEECC
Confidence 44677788999999999887663 2366666553 45554431 111 124566678888882221
Q ss_pred cccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCC-HHHHHHHHHcCCCEEEECccccC
Q psy1056 401 FIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQS-VGHVMKALALGASTAMMGSLLAG 464 (590)
Q Consensus 401 ~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~-~~di~kalalGA~~v~~g~~l~~ 464 (590)
. .+..+..+++.+. .-++|.+|||+. +.++.+++++|||.+.+||.+..
T Consensus 141 ~-------------~~~~i~~lr~~~~--~~~~iv~gGI~~~g~~~~~~~~aGad~vvvGr~I~~ 190 (208)
T 2czd_A 141 T-------------RPERIGYIRDRLK--EGIKILAPGIGAQGGKAKDAVKAGADYIIVGRAIYN 190 (208)
T ss_dssp S-------------STHHHHHHHHHSC--TTCEEEECCCCSSTTHHHHHHHHTCSEEEECHHHHT
T ss_pred C-------------ChHHHHHHHHhCC--CCeEEEECCCCCCCCCHHHHHHcCCCEEEEChHHhc
Confidence 1 2233445555542 135779999986 55899999999999999998854
|
| >3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0085 Score=58.54 Aligned_cols=121 Identities=12% Similarity=0.095 Sum_probs=71.7
Q ss_pred HHHHHHHHHcCCcEEEEec-CCCchhhHHHHHHHHHHhCCCceEE--eccccCcHHHHHHHHCCCCEEEEcccccccCCC
Q psy1056 332 KNRLKLLSQAGVDVVILDS-SQGNSIYQIEMIKFIKKEYPDMQVI--GGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPD 408 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~-~~G~~~~~l~~i~~i~~~~~~vpvi--~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~ 408 (590)
...++.+.++|++.+.+-. +-.. ..+..+..++. ++..+ +....+.+..+++.+.+-.+|.+ ..+. |
T Consensus 106 e~F~~~~~~aGvdG~IipDLP~eE---~~~~~~~~~~~--Gl~~I~lvaP~t~~eRi~~ia~~a~gFiY~---Vs~~--G 175 (252)
T 3tha_A 106 EKFVKKAKSLGICALIVPELSFEE---SDDLIKECERY--NIALITLVSVTTPKERVKKLVKHAKGFIYL---LASI--G 175 (252)
T ss_dssp HHHHHHHHHTTEEEEECTTCCGGG---CHHHHHHHHHT--TCEECEEEETTSCHHHHHHHHTTCCSCEEE---ECCS--C
T ss_pred HHHHHHHHHcCCCEEEeCCCCHHH---HHHHHHHHHHc--CCeEEEEeCCCCcHHHHHHHHHhCCCeEEE---EecC--C
Confidence 3567888899999887633 2221 22333333333 33222 33444678888888887677633 1111 1
Q ss_pred cccccc-chhHHHHHHHHH-hcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 409 MQVIGR-NGTAVYRVAEYA-SRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 409 ~~~~g~-~~~~l~~~~~~~-~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
.+|... ....+.+..+.+ +..++|++..+||+++.++.++.. +||+|.+|+.|.
T Consensus 176 vTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGfGIst~e~a~~~~~-~ADGVIVGSAiV 231 (252)
T 3tha_A 176 ITGTKSVEEAILQDKVKEIRSFTNLPIFVGFGIQNNQDVKRMRK-VADGVIVGTSIV 231 (252)
T ss_dssp SSSCSHHHHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHTT-TSSEEEECHHHH
T ss_pred CCCcccCCCHHHHHHHHHHHHhcCCcEEEEcCcCCHHHHHHHHh-cCCEEEECHHHH
Confidence 222211 112233332222 234699999999999999987655 799999999884
|
| >1n7k_A Deoxyribose-phosphate aldolase; A.pernix, tetramer, alpha-beta TIM barrel, riken S genomics/proteomics initiative, RSGI, structural genomics,; 2.00A {Aeropyrum pernix} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=96.63 E-value=0.014 Score=56.32 Aligned_cols=116 Identities=17% Similarity=0.023 Sum_probs=72.0
Q ss_pred HHHHHHHHcCCcEEEEecCCCch-hhHHHHHHHHHHh---CCCceE--Eecccc-CcH----HHHHHHHCCCCEEEEccc
Q psy1056 333 NRLKLLSQAGVDVVILDSSQGNS-IYQIEMIKFIKKE---YPDMQV--IGGNVL-FGY----QPRATLLNFIYQIEMIKF 401 (590)
Q Consensus 333 e~~~~li~~gad~i~V~~~~G~~-~~~l~~i~~i~~~---~~~vpv--i~g~v~-s~~----~a~~l~~~Gvd~i~v~~~ 401 (590)
..++..++.|++.+-+...-|.. ..+.+.+..+++. | +.|+ |+-... +.+ .++.+.++|+|+|+.+
T Consensus 92 ~e~~~Av~~GAdEID~vinig~~~~~v~~ei~~v~~a~~~~-g~~lKvIlEt~~L~~e~i~~a~ria~eaGADfVKTs-- 168 (234)
T 1n7k_A 92 VEAQTVLEAGATELDVVPHLSLGPEAVYREVSGIVKLAKSY-GAVVKVILEAPLWDDKTLSLLVDSSRRAGADIVKTS-- 168 (234)
T ss_dssp HHHHHHHHHTCCEEEECCCGGGCHHHHHHHHHHHHHHHHHT-TCEEEEECCGGGSCHHHHHHHHHHHHHTTCSEEESC--
T ss_pred HHHHHHHHcCCCEEEEeccchHHHHHHHHHHHHHHHHHhhc-CCeEEEEEeccCCCHHHHHHHHHHHHHhCCCEEEeC--
Confidence 46777888899998776654432 2455556665553 3 3554 542222 433 3345667999999332
Q ss_pred ccccCCCccc-cccchhHHHH--HHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEEC
Q psy1056 402 IKKEYPDMQV-IGRNGTAVYR--VAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMG 459 (590)
Q Consensus 402 ~~~~~~~~~~-~g~~~~~l~~--~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g 459 (590)
.. |.+ .|.+...+.. .++.. ++||-++|||++..|+.+.+.+||+-+...
T Consensus 169 --TG---~~~~~gAt~~dv~l~~m~~~v---~v~VKaaGGirt~~~al~~i~aGa~RiG~S 221 (234)
T 1n7k_A 169 --TG---VYTKGGDPVTVFRLASLAKPL---GMGVKASGGIRSGIDAVLAVGAGADIIGTS 221 (234)
T ss_dssp --CS---SSCCCCSHHHHHHHHHHHGGG---TCEEEEESSCCSHHHHHHHHHTTCSEEEET
T ss_pred --CC---CCCCCCCCHHHHHHHHHHHHH---CCCEEEecCCCCHHHHHHHHHcCccccchH
Confidence 11 322 2324444444 44333 299999999999999999999999955443
|
| >1p1x_A Deoxyribose-phosphate aldolase; alpha-beta barrel, TIM barrel, lyase; 0.99A {Escherichia coli} SCOP: c.1.10.1 PDB: 1jcl_A 1jcj_A* 1ktn_A 3npv_B 3npu_A 3npw_A 3nq2_A 3npx_A 3nq8_A 3q2d_A* 3nr0_A 3nqv_A | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0073 Score=59.30 Aligned_cols=115 Identities=16% Similarity=0.101 Sum_probs=73.4
Q ss_pred HHHHHHHHcCCcEEEEecC-----CCchhhHHHHHHHHHHhCC--Cce--EEecccc--CcH----HHHHHHHCCCCEEE
Q psy1056 333 NRLKLLSQAGVDVVILDSS-----QGNSIYQIEMIKFIKKEYP--DMQ--VIGGNVL--FGY----QPRATLLNFIYQIE 397 (590)
Q Consensus 333 e~~~~li~~gad~i~V~~~-----~G~~~~~l~~i~~i~~~~~--~vp--vi~g~v~--s~~----~a~~l~~~Gvd~i~ 397 (590)
..++..++.|++-+-+... .|+...+.+.+..+++..+ +.| +|+-... +.+ .++.+.++|+|+|+
T Consensus 89 ~E~~~Av~~GAdEIDmVinig~l~~g~~~~v~~ei~~v~~a~~~~g~~lKvIlEt~~L~d~e~i~~a~~ia~eaGADfVK 168 (260)
T 1p1x_A 89 AETRAAIAYGADEVDVVFPYRALMAGNEQVGFDLVKACKEACAAANVLLKVIIETGELKDEALIRKASEISIKAGADFIK 168 (260)
T ss_dssp HHHHHHHHHTCSEEEEECCHHHHHTTCCHHHHHHHHHHHHHHHHTTCEEEEECCHHHHCSHHHHHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHcCCCEEEEeccHHhhhCCCHHHHHHHHHHHHHHhcccCCeEEEEEecccCCcHHHHHHHHHHHHHhCCCEEE
Confidence 4567788889998765443 4566667777777776432 233 3542222 333 34567779999993
Q ss_pred EcccccccCCCccccccchhHHHHHHHHHh----cCCCcEEecCCCCCHHHHHHHHHcCCC
Q psy1056 398 MIKFIKKEYPDMQVIGRNGTAVYRVAEYAS----RRGVPVIADGGVQSVGHVMKALALGAS 454 (590)
Q Consensus 398 v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~----~~~v~iia~GGi~~~~di~kalalGA~ 454 (590)
.| - ||...|.|+..+...++..+ ..+++|-++|||||..|+.+-+.+||+
T Consensus 169 TS----T---Gf~~~gAt~e~v~lm~~~I~~~~~g~~v~VKaaGGIrt~~~al~~i~aga~ 222 (260)
T 1p1x_A 169 TS----T---GKVAVNATPESARIMMEVIRDMGVEKTVGFKPAGGVRTAEDAQKYLAIADE 222 (260)
T ss_dssp CC----C---SCSSCCCCHHHHHHHHHHHHHHTCTTTCEEECBSSCCSHHHHHHHHHHHHH
T ss_pred eC----C---CCCCCCCCHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHHHhhhh
Confidence 32 1 13322336665555554422 235999999999999999999999886
|
| >4a3u_A NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET: FMN; 1.70A {Zymomonas mobilis} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.011 Score=61.22 Aligned_cols=129 Identities=11% Similarity=-0.016 Sum_probs=82.0
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCc--------------------h----hhHHHHHHHHHHhCCCceEEec--------
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGN--------------------S----IYQIEMIKFIKKEYPDMQVIGG-------- 377 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~--------------------~----~~~l~~i~~i~~~~~~vpvi~g-------- 377 (590)
...+.+....++|.|.|.|+.+||+ . ++.++.++.+++..++-++.+.
T Consensus 153 ~F~~AA~rA~~AGFDgVEIH~ahGYLl~QFLSp~tN~RtDeYGGS~eNR~Rf~~Eii~avr~~vg~~~v~vRls~~~~~~ 232 (358)
T 4a3u_A 153 DYEKAARHALKAGFDGVQIHAANGYLIDEFIRDSTNHRHDEYGGAVENRIRLLKDVTERVIATIGKERTAVRLSPNGEIQ 232 (358)
T ss_dssp HHHHHHHHHHHTTCSEEEEEECTTSHHHHHHSTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECCSSCBT
T ss_pred HHHHHHHHHHHcCCCeEeecccCCCcHHhceecccCCeeCCCCCCHHHHHHHHHHHHHHHHHHcCccceEEEeccCcccC
Confidence 3445677888999999999976531 1 3457889999988765455432
Q ss_pred cccC-------cHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHH
Q psy1056 378 NVLF-------GYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALA 450 (590)
Q Consensus 378 ~v~s-------~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kala 450 (590)
+..+ .+.++.+.++|++++.++...... ..+.+........+++. ...|+++ ||+.++..+.++|+
T Consensus 233 g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~a~~ik~~---~~~~v~~-~g~~~~~~ae~~l~ 305 (358)
T 4a3u_A 233 GTVDSHPEQVFIPAAKMLSDLDIAFLGMREGAVDG---TFGKTDQPKLSPEIRKV---FKPPLVL-NQDYTFETAQAALD 305 (358)
T ss_dssp TBCCSSTHHHHHHHHHHHHHHTCSEEEEECCBTTC---SSSBCSSCCCHHHHHHH---CCSCEEE-ESSCCHHHHHHHHH
T ss_pred CCcccchHHHHHHHHHhhhccCccccccccccccC---cccccccHHHHHHHHHh---cCCcEEE-eCCCCHHHHHHHHH
Confidence 1111 123567778999999774222111 11112222222334433 2356664 78889999999999
Q ss_pred cC-CCEEEECccccCC
Q psy1056 451 LG-ASTAMMGSLLAGT 465 (590)
Q Consensus 451 lG-A~~v~~g~~l~~~ 465 (590)
-| ||+|.+|++|..-
T Consensus 306 ~G~aD~V~~gR~~lad 321 (358)
T 4a3u_A 306 SGVADAISFGRPFIGN 321 (358)
T ss_dssp HTSCSEEEESHHHHHC
T ss_pred cCCceEeHhhHHHHhC
Confidence 99 9999999988644
|
| >1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0059 Score=60.83 Aligned_cols=91 Identities=15% Similarity=0.075 Sum_probs=68.0
Q ss_pred HHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhc--CCCcEEe
Q psy1056 358 QIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASR--RGVPVIA 435 (590)
Q Consensus 358 ~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~--~~v~iia 435 (590)
+...++..++.+|..++.+ ++.+.++++++.++|+|+|-+.. . +++.+.++.+.+.. .++++.+
T Consensus 181 i~~av~~ar~~~~~~~I~V-ev~t~eea~eal~aGaD~I~LDn----~---------~~~~~~~~v~~l~~~~~~v~iea 246 (284)
T 1qpo_A 181 VVDALRAVRNAAPDLPCEV-EVDSLEQLDAVLPEKPELILLDN----F---------AVWQTQTAVQRRDSRAPTVMLES 246 (284)
T ss_dssp HHHHHHHHHHHCTTSCEEE-EESSHHHHHHHGGGCCSEEEEET----C---------CHHHHHHHHHHHHHHCTTCEEEE
T ss_pred HHHHHHHHHHhCCCCCEEE-EeCCHHHHHHHHHcCCCEEEECC----C---------CHHHHHHHHHHhhccCCCeEEEE
Confidence 4567888888887666666 89999999999999999883311 1 33334444444333 2589999
Q ss_pred cCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 436 DGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 436 ~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
+||| |+..+..-...|+|.+.+|++..
T Consensus 247 SGGI-t~~~i~~~a~tGVD~isvG~l~~ 273 (284)
T 1qpo_A 247 SGGL-SLQTAATYAETGVDYLAVGALTH 273 (284)
T ss_dssp ESSC-CTTTHHHHHHTTCSEEECGGGTS
T ss_pred ECCC-CHHHHHHHHhcCCCEEEECHHHc
Confidence 9999 78888888889999999998663
|
| >1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0014 Score=63.96 Aligned_cols=76 Identities=13% Similarity=0.110 Sum_probs=52.8
Q ss_pred CcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECc
Q psy1056 381 FGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGS 460 (590)
Q Consensus 381 s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~ 460 (590)
..+.++.+.++|+|+|.++-- ... ..+.+.... .+++.+ ..++|+++.|||++..++.++++.|||.|++|+
T Consensus 32 ~~~~a~~~~~~Gad~i~v~d~-~~~---~~~~~~~~~---~i~~i~-~~~ipvi~~Ggi~~~~~~~~~~~~Gad~V~lg~ 103 (241)
T 1qo2_A 32 PVELVEKLIEEGFTLIHVVDL-SNA---IENSGENLP---VLEKLS-EFAEHIQIGGGIRSLDYAEKLRKLGYRRQIVSS 103 (241)
T ss_dssp HHHHHHHHHHTTCCCEEEEEH-HHH---HHCCCTTHH---HHHHGG-GGGGGEEEESSCCSHHHHHHHHHTTCCEEEECH
T ss_pred HHHHHHHHHHcCCCEEEEecc-ccc---ccCCchhHH---HHHHHH-hcCCcEEEECCCCCHHHHHHHHHCCCCEEEECc
Confidence 456788899999999965211 000 001111322 334433 456999999999999999999999999999998
Q ss_pred cccC
Q psy1056 461 LLAG 464 (590)
Q Consensus 461 ~l~~ 464 (590)
.+..
T Consensus 104 ~~l~ 107 (241)
T 1qo2_A 104 KVLE 107 (241)
T ss_dssp HHHH
T ss_pred hHhh
Confidence 7643
|
| >1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=96.55 E-value=0.013 Score=59.07 Aligned_cols=119 Identities=14% Similarity=0.057 Sum_probs=71.5
Q ss_pred HHHHHHcCCcEEEEecCCC--c-hhhHHHHHHHHH---HhCCCceEEec------cccC--------cHHHHHHHHCCCC
Q psy1056 335 LKLLSQAGVDVVILDSSQG--N-SIYQIEMIKFIK---KEYPDMQVIGG------NVLF--------GYQPRATLLNFIY 394 (590)
Q Consensus 335 ~~~li~~gad~i~V~~~~G--~-~~~~l~~i~~i~---~~~~~vpvi~g------~v~s--------~~~a~~l~~~Gvd 394 (590)
++..++.|++++.+...-+ + ....++.++.+. ..+ ++|+++- .+.. .+.++.+.+.|+|
T Consensus 114 ve~a~~~GAdaV~vlv~~~~d~~~~~~~~~i~~v~~~~~~~-G~p~lv~~~~~g~~v~~~~~~~~~v~~aa~~a~~lGaD 192 (304)
T 1to3_A 114 AQAVKRDGAKALKLLVLWRSDEDAQQRLNMVKEFNELCHSN-GLLSIIEPVVRPPRCGDKFDREQAIIDAAKELGDSGAD 192 (304)
T ss_dssp HHHHHHTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHTT-TCEEEEEEEECCCSSCSCCCHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHcCCCEEEEEEEcCCCccHHHHHHHHHHHHHHHHHc-CCcEEEEEECCCCccccCCChhHHHHHHHHHHHHcCCC
Confidence 4567788999987544211 1 233344444433 345 7887642 2221 2247788889999
Q ss_pred EEEEcccccccCCCccccccchhHHHHHHHHHhc-CCCc-EEecCCCCCHH----HHHHHHHcCCCEEEECcccc
Q psy1056 395 QIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASR-RGVP-VIADGGVQSVG----HVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 395 ~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~-~~v~-iia~GGi~~~~----di~kalalGA~~v~~g~~l~ 463 (590)
++++..... . + | +...+.++.+.... .++| |+++||+ +.. .+..|+..||+.|.+||.+.
T Consensus 193 ~iKv~~~~~-~---~---g-~~~~~~~vv~~~~~~~~~P~Vv~aGG~-~~~~~~~~~~~a~~aGa~Gv~vGRaI~ 258 (304)
T 1to3_A 193 LYKVEMPLY-G---K---G-ARSDLLTASQRLNGHINMPWVILSSGV-DEKLFPRAVRVAMEAGASGFLAGRAVW 258 (304)
T ss_dssp EEEECCGGG-G---C---S-CHHHHHHHHHHHHHTCCSCEEECCTTS-CTTTHHHHHHHHHHTTCCEEEESHHHH
T ss_pred EEEeCCCcC-C---C---C-CHHHHHHHHHhccccCCCCeEEEecCC-CHHHHHHHHHHHHHcCCeEEEEehHHh
Confidence 996633111 1 0 1 23334444333222 4799 9999999 563 37788899999999998773
|
| >1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.011 Score=56.59 Aligned_cols=121 Identities=12% Similarity=0.036 Sum_probs=75.6
Q ss_pred HHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEE---eccccCcHHHHHHHHCCCCEEEEcccccccCCCccc
Q psy1056 335 LKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVI---GGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQV 411 (590)
Q Consensus 335 ~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi---~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~ 411 (590)
++.+.+.|+|.+.++...|.. .+...++.+++. +.++. .+.+. ...+..+.+.|.+.+.+.........|+.|
T Consensus 73 ~~~~~~~Gad~itvh~~~g~~-~l~~~~~~~~~~--g~~~~~~ll~~~t-~~~~~~l~~~~~~~~vl~~a~~~~~~G~~g 148 (216)
T 1q6o_A 73 SRMCFEANADWVTVICCADIN-TAKGALDVAKEF--NGDVQIELTGYWT-WEQAQQWRDAGIGQVVYHRSRDAQAAGVAW 148 (216)
T ss_dssp HHHHHHTTCSEEEEETTSCHH-HHHHHHHHHHHT--TCEEEEEECSCCC-HHHHHHHHHTTCCEEEEECCHHHHHTTCCC
T ss_pred HHHHHhCCCCEEEEeccCCHH-HHHHHHHHHHHc--CCCceeeeeeCCC-hhhHHHHHhcCcHHHHHHHHHHHHhcCCCC
Confidence 447888999999998876532 233455555554 45532 21222 556677777887766331100000011221
Q ss_pred cccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccC
Q psy1056 412 IGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAG 464 (590)
Q Consensus 412 ~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~ 464 (590)
++..+..+++.+. .+.|++++|||+ +..+.+++..|||.+.+|+.+..
T Consensus 149 ---~~~~i~~lr~~~~-~~~~i~v~GGI~-~~~~~~~~~aGad~ivvG~~I~~ 196 (216)
T 1q6o_A 149 ---GEADITAIKRLSD-MGFKVTVTGGLA-LEDLPLFKGIPIHVFIAGRSIRD 196 (216)
T ss_dssp ---CHHHHHHHHHHHH-TTCEEEEESSCC-GGGGGGGTTSCCSEEEESHHHHT
T ss_pred ---CHHHHHHHHHhcC-CCCcEEEECCcC-hhhHHHHHHcCCCEEEEeehhcC
Confidence 2444556666553 358899999997 77788999999999999998854
|
| >2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0028 Score=63.84 Aligned_cols=90 Identities=11% Similarity=-0.000 Sum_probs=66.9
Q ss_pred HHHHHHHHHhCCC-ceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhc--CCCcEEe
Q psy1056 359 IEMIKFIKKEYPD-MQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASR--RGVPVIA 435 (590)
Q Consensus 359 l~~i~~i~~~~~~-vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~--~~v~iia 435 (590)
.+.++.+++.+|. .++++ ++.+.++++++.++|+|+|.+.. . .+..+.++.+.+.. .++||.+
T Consensus 184 ~~ai~~~r~~~~~~~~i~v-ev~tlee~~~A~~aGaD~I~ld~----~---------~~~~l~~~v~~l~~~~~~~~I~A 249 (299)
T 2jbm_A 184 EKAVRAARQAADFALKVEV-ECSSLQEAVQAAEAGADLVLLDN----F---------KPEELHPTATVLKAQFPSVAVEA 249 (299)
T ss_dssp HHHHHHHHHHHTTTSCEEE-EESSHHHHHHHHHTTCSEEEEES----C---------CHHHHHHHHHHHHHHCTTSEEEE
T ss_pred HHHHHHHHHhCCcCCeEEE-ecCCHHHHHHHHHcCCCEEEECC----C---------CHHHHHHHHHHhhccCCCeeEEE
Confidence 5677778877754 56666 88899999999999999994421 1 23334444444432 2389999
Q ss_pred cCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 436 DGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 436 ~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
+||| |...+..-.+.|||.+.+|+++.
T Consensus 250 SGGI-t~~ni~~~~~aGaD~i~vGs~i~ 276 (299)
T 2jbm_A 250 SGGI-TLDNLPQFCGPHIDVISMGMLTQ 276 (299)
T ss_dssp ESSC-CTTTHHHHCCTTCCEEECTHHHH
T ss_pred ECCC-CHHHHHHHHHCCCCEEEEChhhc
Confidence 9999 99999988899999999998663
|
| >3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0072 Score=59.98 Aligned_cols=89 Identities=11% Similarity=0.034 Sum_probs=66.9
Q ss_pred HHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecC
Q psy1056 358 QIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADG 437 (590)
Q Consensus 358 ~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~G 437 (590)
+.+.++..++..|..++.+ +|.|.++++++.++|+|+|-+.. - ++..+.++.+... .++++.+||
T Consensus 185 i~~Av~~ar~~~~~~~IeV-Ev~tl~ea~eAl~aGaD~I~LDn----~---------~~~~l~~av~~~~-~~v~ieaSG 249 (287)
T 3tqv_A 185 IAKAVTKAKKLDSNKVVEV-EVTNLDELNQAIAAKADIVMLDN----F---------SGEDIDIAVSIAR-GKVALEVSG 249 (287)
T ss_dssp HHHHHHHHHHHCTTSCEEE-EESSHHHHHHHHHTTCSEEEEES----C---------CHHHHHHHHHHHT-TTCEEEEES
T ss_pred HHHHHHHHHhhCCCCcEEE-EeCCHHHHHHHHHcCCCEEEEcC----C---------CHHHHHHHHHhhc-CCceEEEEC
Confidence 4567777787777788877 99999999999999999993321 1 3333444444443 258999999
Q ss_pred CCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 438 GVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 438 Gi~~~~di~kalalGA~~v~~g~~l 462 (590)
|| |...+..-...|+|.+.+|.+.
T Consensus 250 GI-t~~~i~~~a~tGVD~IsvGalt 273 (287)
T 3tqv_A 250 NI-DRNSIVAIAKTGVDFISVGAIT 273 (287)
T ss_dssp SC-CTTTHHHHHTTTCSEEECSHHH
T ss_pred CC-CHHHHHHHHHcCCCEEEEChhh
Confidence 99 7778877777899999998765
|
| >3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0024 Score=64.18 Aligned_cols=90 Identities=10% Similarity=0.041 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhCCC-ceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcC-----CC
Q psy1056 358 QIEMIKFIKKEYPD-MQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRR-----GV 431 (590)
Q Consensus 358 ~l~~i~~i~~~~~~-vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~-----~v 431 (590)
+.+.++.+++.+|. .++++ ++.+.++++++.++|+|+|.+.. + .+..+.++.+..... ++
T Consensus 185 i~~ai~~~r~~~~~~~~i~v-ev~tlee~~~A~~aGaD~I~ld~-----------~--~~~~l~~~v~~l~~~~~g~~~v 250 (294)
T 3c2e_A 185 ITNAVKNARAVCGFAVKIEV-ECLSEDEATEAIEAGADVIMLDN-----------F--KGDGLKMCAQSLKNKWNGKKHF 250 (294)
T ss_dssp HHHHHHHHHHHHCTTSCEEE-ECSSSHHHHHHHHHTCSEEECCC----------------------------------CC
T ss_pred HHHHHHHHHHhcCcCCeEEE-ecCCHHHHHHHHHcCCCEEEECC-----------C--CHHHHHHHHHHhcccccCCCCe
Confidence 45677888887764 56666 88899999999999999994321 1 122233333333221 28
Q ss_pred cEEecCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 432 PVIADGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 432 ~iia~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
||.++||| |...+..-...|||.+.+|+.+
T Consensus 251 ~I~ASGGI-t~~ni~~~~~~GvD~i~vGs~i 280 (294)
T 3c2e_A 251 LLECSGGL-NLDNLEEYLCDDIDIYSTSSIH 280 (294)
T ss_dssp EEEEECCC-CC------CCCSCSEEECGGGT
T ss_pred EEEEECCC-CHHHHHHHHHcCCCEEEEechh
Confidence 99999999 9999998888999999999876
|
| >1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=96.48 E-value=0.016 Score=55.91 Aligned_cols=110 Identities=11% Similarity=-0.031 Sum_probs=69.9
Q ss_pred CcEEEEecCCCchhhHHHHHH---HHHHhCCCceEEe-ccccC-cHHHHHHHHCC-CCEEEE-cccccccCCCcccccc-
Q psy1056 343 VDVVILDSSQGNSIYQIEMIK---FIKKEYPDMQVIG-GNVLF-GYQPRATLLNF-IYQIEM-IKFIKKEYPDMQVIGR- 414 (590)
Q Consensus 343 ad~i~V~~~~G~~~~~l~~i~---~i~~~~~~vpvi~-g~v~s-~~~a~~l~~~G-vd~i~v-~~~~~~~~~~~~~~g~- 414 (590)
++.+.++...... .....++ .+++. +..+.+ =+..| .+..+.+.++| +|+|-+ +++.+ |.|..+
T Consensus 86 Ad~itvH~ea~~~-~~~~~i~~~~~i~~~--G~k~gvalnp~tp~~~~~~~l~~g~~D~VlvmsV~pG-----f~gq~f~ 157 (227)
T 1tqx_A 86 SNQLTFHFEALNE-DTERCIQLAKEIRDN--NLWCGISIKPKTDVQKLVPILDTNLINTVLVMTVEPG-----FGGQSFM 157 (227)
T ss_dssp SSEEEEEGGGGTT-CHHHHHHHHHHHHTT--TCEEEEEECTTSCGGGGHHHHTTTCCSEEEEESSCTT-----CSSCCCC
T ss_pred CCEEEEeecCCcc-CHHHHHHHHHHHHHc--CCeEEEEeCCCCcHHHHHHHhhcCCcCEEEEeeeccC-----CCCcccc
Confidence 8888887654320 2344555 66665 333322 24444 45667777776 999955 54433 333222
Q ss_pred --chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 415 --NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 415 --~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
+..-+.++++... +++|.++|||. ...+.++.+.|||.+++|+.+.
T Consensus 158 ~~~l~ki~~lr~~~~--~~~I~VdGGI~-~~ti~~~~~aGAd~~V~GsaIf 205 (227)
T 1tqx_A 158 HDMMGKVSFLRKKYK--NLNIQVDGGLN-IETTEISASHGANIIVAGTSIF 205 (227)
T ss_dssp GGGHHHHHHHHHHCT--TCEEEEESSCC-HHHHHHHHHHTCCEEEESHHHH
T ss_pred hHHHHHHHHHHHhcc--CCeEEEECCCC-HHHHHHHHHcCCCEEEEeHHHh
Confidence 2333444444432 68999999994 7899999999999999999874
|
| >1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1 | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0031 Score=62.88 Aligned_cols=91 Identities=11% Similarity=-0.046 Sum_probs=67.4
Q ss_pred HHHHHHHHHHhCCC-ceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhc--CCCcEE
Q psy1056 358 QIEMIKFIKKEYPD-MQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASR--RGVPVI 434 (590)
Q Consensus 358 ~l~~i~~i~~~~~~-vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~--~~v~ii 434 (590)
+...++..++..|. .++.+ +|.|.++++++.++|+|+|-+.. - +++.+.++.+.... .++|+.
T Consensus 179 i~~av~~ar~~~~~~~~I~V-EV~tleea~eA~~aGaD~I~LDn----~---------~~e~l~~av~~l~~~~~~v~ie 244 (285)
T 1o4u_A 179 AERAVQEVRKIIPFTTKIEV-EVENLEDALRAVEAGADIVMLDN----L---------SPEEVKDISRRIKDINPNVIVE 244 (285)
T ss_dssp HHHHHHHHHTTSCTTSCEEE-EESSHHHHHHHHHTTCSEEEEES----C---------CHHHHHHHHHHHHHHCTTSEEE
T ss_pred HHHHHHHHHHhCCCCceEEE-EeCCHHHHHHHHHcCCCEEEECC----C---------CHHHHHHHHHHhhccCCCceEE
Confidence 45678888888765 57766 88999999999999999993321 1 33344444444432 258999
Q ss_pred ecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 435 ADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 435 a~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
++||| |...+..-.+.|+|.+.+|++..
T Consensus 245 ASGGI-t~eni~~~a~tGVD~IsvGslt~ 272 (285)
T 1o4u_A 245 VSGGI-TEENVSLYDFETVDVISSSRLTL 272 (285)
T ss_dssp EEECC-CTTTGGGGCCTTCCEEEEGGGTS
T ss_pred EECCC-CHHHHHHHHHcCCCEEEEeHHHc
Confidence 99999 77788877788999999998663
|
| >3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0079 Score=60.01 Aligned_cols=89 Identities=15% Similarity=0.025 Sum_probs=64.4
Q ss_pred HHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecC
Q psy1056 358 QIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADG 437 (590)
Q Consensus 358 ~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~G 437 (590)
+.+.++.+++..|..++.+ +|-|.+++++++++|+|+|.+.. - ++..+.++.+... .++++.+||
T Consensus 196 i~~Av~~~r~~~p~~~ieV-Evdtlde~~eAl~aGaD~I~LDn----~---------~~~~l~~av~~i~-~~v~ieaSG 260 (298)
T 3gnn_A 196 VGEALDAAFALNAEVPVQI-EVETLDQLRTALAHGARSVLLDN----F---------TLDMMRDAVRVTE-GRAVLEVSG 260 (298)
T ss_dssp HHHHHHHHHHHC--CCCEE-EESSHHHHHHHHHTTCEEEEEES----C---------CHHHHHHHHHHHT-TSEEEEEES
T ss_pred HHHHHHHHHHhCCCCCEEE-EeCCHHHHHHHHHcCCCEEEECC----C---------CHHHHHHHHHHhC-CCCeEEEEc
Confidence 4577888888887777666 78999999999999999993321 0 2333444444332 358999999
Q ss_pred CCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 438 GVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 438 Gi~~~~di~kalalGA~~v~~g~~l 462 (590)
|| |...+..-...|+|++.+|+..
T Consensus 261 GI-~~~~i~~~a~tGVD~isvG~lt 284 (298)
T 3gnn_A 261 GV-NFDTVRAIAETGVDRISIGALT 284 (298)
T ss_dssp SC-STTTHHHHHHTTCSEEECGGGG
T ss_pred CC-CHHHHHHHHHcCCCEEEECCee
Confidence 99 7777877777899999999854
|
| >1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0055 Score=59.63 Aligned_cols=76 Identities=17% Similarity=0.156 Sum_probs=53.3
Q ss_pred CcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECc
Q psy1056 381 FGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGS 460 (590)
Q Consensus 381 s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~ 460 (590)
..+.++.+.++|+|+|.++.-. .. + .+ ....+..+++..+..++|+++.||++++.++.+++++|||+|.+|+
T Consensus 35 ~~~~a~~~~~~G~d~i~v~~~~-~~---~--~~-~~~~~~~i~~i~~~~~ipvi~~g~i~~~~~~~~~~~~Gad~V~i~~ 107 (253)
T 1h5y_A 35 PVEMAVRYEEEGADEIAILDIT-AA---P--EG-RATFIDSVKRVAEAVSIPVLVGGGVRSLEDATTLFRAGADKVSVNT 107 (253)
T ss_dssp HHHHHHHHHHTTCSCEEEEECC-CC---T--TT-HHHHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHHTCSEEEESH
T ss_pred HHHHHHHHHHcCCCEEEEEeCC-cc---c--cC-CcccHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEECh
Confidence 4577888999999988653111 11 0 01 1112223344444557999999999999999999999999999997
Q ss_pred ccc
Q psy1056 461 LLA 463 (590)
Q Consensus 461 ~l~ 463 (590)
.+.
T Consensus 108 ~~~ 110 (253)
T 1h5y_A 108 AAV 110 (253)
T ss_dssp HHH
T ss_pred HHh
Confidence 664
|
| >3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.012 Score=58.59 Aligned_cols=89 Identities=13% Similarity=0.087 Sum_probs=66.7
Q ss_pred HHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecC
Q psy1056 358 QIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADG 437 (590)
Q Consensus 358 ~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~G 437 (590)
+.+.++.+++..|..++.+ +|.|.+++++++++|+|.|-+.. + ++..+.++.+.... ++.+.+||
T Consensus 194 i~~Av~~ar~~~p~~kIeV-Ev~tl~e~~eAl~aGaDiImLDn--------~-----s~~~l~~av~~~~~-~v~leaSG 258 (300)
T 3l0g_A 194 ITLAIQRLRKNLKNEYIAI-ECDNISQVEESLSNNVDMILLDN--------M-----SISEIKKAVDIVNG-KSVLEVSG 258 (300)
T ss_dssp HHHHHHHHHHHSSSCCEEE-EESSHHHHHHHHHTTCSEEEEES--------C-----CHHHHHHHHHHHTT-SSEEEEES
T ss_pred HHHHHHHHHHhCCCCCEEE-EECCHHHHHHHHHcCCCEEEECC--------C-----CHHHHHHHHHhhcC-ceEEEEEC
Confidence 4577888888888788777 99999999999999999993321 1 33344444444432 58999999
Q ss_pred CCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 438 GVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 438 Gi~~~~di~kalalGA~~v~~g~~l 462 (590)
|| |...+..-...|+|++.+|.+.
T Consensus 259 GI-t~~~i~~~A~tGVD~IsvGalt 282 (300)
T 3l0g_A 259 CV-NIRNVRNIALTGVDYISIGCIT 282 (300)
T ss_dssp SC-CTTTHHHHHTTTCSEEECGGGT
T ss_pred CC-CHHHHHHHHHcCCCEEEeCccc
Confidence 99 7777776666799999999765
|
| >3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.036 Score=53.49 Aligned_cols=109 Identities=13% Similarity=0.104 Sum_probs=77.8
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEe--cc------c-c--CcHHHHHHHHCCCCEEEE
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIG--GN------V-L--FGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~--g~------v-~--s~~~a~~l~~~Gvd~i~v 398 (590)
...+.+....++|+..+.+.. .+.++.+++.. ++|++. +. + . +.++++.+.++|+|+|.+
T Consensus 37 ~~~~~A~a~~~~Ga~~i~~~~--------~~~i~~ir~~v-~~Pvig~~k~~~~~~~~~I~~~~~~i~~~~~aGad~I~l 107 (229)
T 3q58_A 37 IVAAMAQAAASAGAVAVRIEG--------IENLRTVRPHL-SVPIIGIIKRDLTGSPVRITPYLQDVDALAQAGADIIAF 107 (229)
T ss_dssp HHHHHHHHHHHTTCSEEEEES--------HHHHHHHGGGC-CSCEEEECBCCCSSCCCCBSCSHHHHHHHHHHTCSEEEE
T ss_pred hHHHHHHHHHHCCCcEEEECC--------HHHHHHHHHhc-CCCEEEEEeecCCCCceEeCccHHHHHHHHHcCCCEEEE
Confidence 455678888899999987631 56788888887 789872 21 2 2 456899999999998833
Q ss_pred cccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEEC
Q psy1056 399 IKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMG 459 (590)
Q Consensus 399 ~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g 459 (590)
.++.+. .+..+.++.+.+++.++++++ .+.|..++.+|..+|||++.+.
T Consensus 108 -~~~~~~---------~p~~l~~~i~~~~~~g~~v~~--~v~t~eea~~a~~~Gad~Ig~~ 156 (229)
T 3q58_A 108 -DASFRS---------RPVDIDSLLTRIRLHGLLAMA--DCSTVNEGISCHQKGIEFIGTT 156 (229)
T ss_dssp -ECCSSC---------CSSCHHHHHHHHHHTTCEEEE--ECSSHHHHHHHHHTTCSEEECT
T ss_pred -CccccC---------ChHHHHHHHHHHHHCCCEEEE--ecCCHHHHHHHHhCCCCEEEec
Confidence 122211 223344555555566788888 7899999999999999999653
|
| >4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ... | Back alignment and structure |
|---|
Probab=96.26 E-value=0.025 Score=54.88 Aligned_cols=115 Identities=11% Similarity=0.005 Sum_probs=85.6
Q ss_pred HHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEecccc-CcHHHHHHHHCCCCEEEEcccccccCCCcc
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVL-FGYQPRATLLNFIYQIEMIKFIKKEYPDMQ 410 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~-s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~ 410 (590)
.+.++ ..++|+.++.|-+-..+..|-++.+..+++.. ++|++.|+.. ++.+..++..+|||+|-+ +....
T Consensus 67 ~~iA~-~~~~GA~aiSVLTd~~~F~Gs~~~L~~vr~~v-~lPvLrKDFiid~yQI~eAr~~GADaILL-I~a~L------ 137 (258)
T 4a29_A 67 IEYAK-FMERYAVGLSITTEEKYFNGSYETLRKIASSV-SIPILMSDFIVKESQIDDAYNLGADTVLL-IVKIL------ 137 (258)
T ss_dssp HHHHH-HHTTTCSEEEEECCSTTTCCCHHHHHHHHTTC-SSCEEEESCCCSHHHHHHHHHHTCSEEEE-EGGGS------
T ss_pred HHHHH-HHhCCCeEEEEeCCCCCCCCCHHHHHHHHHhc-CCCEeeccccccHHHHHHHHHcCCCeeeh-HHhhc------
Confidence 34443 44689999998876655556677888888877 7999999855 999999999999999943 11111
Q ss_pred ccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcc
Q psy1056 411 VIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSL 461 (590)
Q Consensus 411 ~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~ 461 (590)
+...+.++.+.+...|+.++. =+.|..++-+|+.+||+.+++-.+
T Consensus 138 ----~~~~l~~l~~~A~~lGl~~Lv--EVh~~~El~rAl~~~a~iIGINNR 182 (258)
T 4a29_A 138 ----TERELESLLEYARSYGMEPLI--LINDENDLDIALRIGARFIGIMSR 182 (258)
T ss_dssp ----CHHHHHHHHHHHHHTTCCCEE--EESSHHHHHHHHHTTCSEEEECSB
T ss_pred ----CHHHHHHHHHHHHHHhHHHHH--hcchHHHHHHHhcCCCcEEEEeCC
Confidence 223355666666777887777 589999999999999999977643
|
| >3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=96.21 E-value=0.042 Score=53.09 Aligned_cols=109 Identities=17% Similarity=0.096 Sum_probs=77.5
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEe--cc------c---cCcHHHHHHHHCCCCEEEE
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIG--GN------V---LFGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~--g~------v---~s~~~a~~l~~~Gvd~i~v 398 (590)
...+.+....+.|+..+.+.. .+.++.+++.. ++|++. +. + .+.++++.+.++|+|+|.+
T Consensus 37 ~~~~~A~a~~~~Ga~~i~~~~--------~~~i~~ir~~v-~~Pvig~~k~d~~~~~~~I~~~~~~i~~~~~~Gad~V~l 107 (232)
T 3igs_A 37 IVAAMALAAEQAGAVAVRIEG--------IDNLRMTRSLV-SVPIIGIIKRDLDESPVRITPFLDDVDALAQAGAAIIAV 107 (232)
T ss_dssp HHHHHHHHHHHTTCSEEEEES--------HHHHHHHHTTC-CSCEEEECBCCCSSCCCCBSCSHHHHHHHHHHTCSEEEE
T ss_pred hHHHHHHHHHHCCCeEEEECC--------HHHHHHHHHhc-CCCEEEEEeecCCCcceEeCccHHHHHHHHHcCCCEEEE
Confidence 456678888899999987631 46788888887 789862 21 2 2456899999999998843
Q ss_pred cccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEEC
Q psy1056 399 IKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMG 459 (590)
Q Consensus 399 ~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g 459 (590)
. ++.+. .+..+.++.+.+++.++++++ .+.|..++.+|..+|||++.++
T Consensus 108 ~-~~~~~---------~p~~l~~~i~~~~~~g~~v~~--~v~t~eea~~a~~~Gad~Ig~~ 156 (232)
T 3igs_A 108 D-GTARQ---------RPVAVEALLARIHHHHLLTMA--DCSSVDDGLACQRLGADIIGTT 156 (232)
T ss_dssp E-CCSSC---------CSSCHHHHHHHHHHTTCEEEE--ECCSHHHHHHHHHTTCSEEECT
T ss_pred C-ccccC---------CHHHHHHHHHHHHHCCCEEEE--eCCCHHHHHHHHhCCCCEEEEc
Confidence 1 11111 223344555555566788888 7899999999999999999653
|
| >2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0096 Score=57.87 Aligned_cols=75 Identities=19% Similarity=0.135 Sum_probs=52.7
Q ss_pred CcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECc
Q psy1056 381 FGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGS 460 (590)
Q Consensus 381 s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~ 460 (590)
..+.++.+.++|+|+|-+...... +.+ ..+. ..+.+.++..++|++..|||+++.++..++++|||.|.+|+
T Consensus 33 ~~~~a~~~~~~Gad~i~v~~~d~~----~~~-~~~~---~~i~~i~~~~~ipv~v~ggi~~~~~~~~~l~~Gad~V~lg~ 104 (244)
T 2y88_A 33 AVDAALGWQRDGAEWIHLVDLDAA----FGR-GSNH---ELLAEVVGKLDVQVELSGGIRDDESLAAALATGCARVNVGT 104 (244)
T ss_dssp HHHHHHHHHHTTCSEEEEEEHHHH----TTS-CCCH---HHHHHHHHHCSSEEEEESSCCSHHHHHHHHHTTCSEEEECH
T ss_pred HHHHHHHHHHcCCCEEEEEcCccc----ccC-CChH---HHHHHHHHhcCCcEEEECCCCCHHHHHHHHHcCCCEEEECc
Confidence 356778889999999966321111 111 1122 23344444557999999999999999999999999999997
Q ss_pred ccc
Q psy1056 461 LLA 463 (590)
Q Consensus 461 ~l~ 463 (590)
.+.
T Consensus 105 ~~l 107 (244)
T 2y88_A 105 AAL 107 (244)
T ss_dssp HHH
T ss_pred hHh
Confidence 653
|
| >1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A | Back alignment and structure |
|---|
Probab=96.20 E-value=0.035 Score=54.26 Aligned_cols=115 Identities=9% Similarity=0.032 Sum_probs=85.2
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEecccc-CcHHHHHHHHCCCCEEEEcccccccCCC
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVL-FGYQPRATLLNFIYQIEMIKFIKKEYPD 408 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~-s~~~a~~l~~~Gvd~i~v~~~~~~~~~~ 408 (590)
+..+.+....+. +..+.|.+-..+..+-.+.+..+++.. ++|++.|+-. +..+...+..+|||+|-+- ++.+
T Consensus 62 ~~~~iA~~y~~~-A~~IsVlTd~~~F~gs~~dL~~ir~~v-~lPvLrKDfi~~~~qi~ea~~~GAD~ilLi-~a~l---- 134 (251)
T 1i4n_A 62 SLEDFIRMYDEL-ADAISILTEKHYFKGDPAFVRAARNLT-CRPILAKDFYIDTVQVKLASSVGADAILII-ARIL---- 134 (251)
T ss_dssp CHHHHHHHHHHH-CSEEEEECCCSSSCCCTHHHHHHHTTC-CSCEEEECCCCSTHHHHHHHHTTCSEEEEE-GGGS----
T ss_pred CHHHHHHHHHHh-CCceEEEecccccCCCHHHHHHHHHhC-CCCEEEeeCCCCHHHHHHHHHcCCCEEEEe-cccC----
Confidence 445667777777 888888765544455567788888876 7999988755 6677888999999999441 2211
Q ss_pred ccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHc-CCCEEEEC
Q psy1056 409 MQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALAL-GASTAMMG 459 (590)
Q Consensus 409 ~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalal-GA~~v~~g 459 (590)
+...+.++.+.+...|..+++ =+.|..++.+|+.+ ||+.+++=
T Consensus 135 ------~~~~l~~l~~~a~~lGl~~lv--Ev~~~eE~~~A~~l~g~~iIGin 178 (251)
T 1i4n_A 135 ------TAEQIKEIYEAAEELGMDSLV--EVHSREDLEKVFSVIRPKIIGIN 178 (251)
T ss_dssp ------CHHHHHHHHHHHHTTTCEEEE--EECSHHHHHHHHTTCCCSEEEEE
T ss_pred ------CHHHHHHHHHHHHHcCCeEEE--EeCCHHHHHHHHhcCCCCEEEEe
Confidence 223456666677777888888 67899999999999 99998554
|
| >1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0076 Score=58.69 Aligned_cols=75 Identities=16% Similarity=0.096 Sum_probs=52.4
Q ss_pred CcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECc
Q psy1056 381 FGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGS 460 (590)
Q Consensus 381 s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~ 460 (590)
..+.++.+.++|+|+|-+..... . +. +. ... ..+.+.++..++|++..|||+++.++..++.+|||.|.+|+
T Consensus 34 ~~~~a~~~~~~Gad~i~v~~~d~-~---~~--~~-~~~-~~i~~i~~~~~ipv~v~ggI~~~~~~~~~l~~Gad~V~lg~ 105 (244)
T 1vzw_A 34 PLEAALAWQRSGAEWLHLVDLDA-A---FG--TG-DNR-ALIAEVAQAMDIKVELSGGIRDDDTLAAALATGCTRVNLGT 105 (244)
T ss_dssp HHHHHHHHHHTTCSEEEEEEHHH-H---HT--SC-CCH-HHHHHHHHHCSSEEEEESSCCSHHHHHHHHHTTCSEEEECH
T ss_pred HHHHHHHHHHcCCCEEEEecCch-h---hc--CC-ChH-HHHHHHHHhcCCcEEEECCcCCHHHHHHHHHcCCCEEEECc
Confidence 34667888999999996632111 0 11 11 111 23344444557999999999999999999999999999997
Q ss_pred ccc
Q psy1056 461 LLA 463 (590)
Q Consensus 461 ~l~ 463 (590)
...
T Consensus 106 ~~l 108 (244)
T 1vzw_A 106 AAL 108 (244)
T ss_dssp HHH
T ss_pred hHh
Confidence 553
|
| >4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A | Back alignment and structure |
|---|
Probab=95.94 E-value=0.013 Score=58.84 Aligned_cols=111 Identities=14% Similarity=0.174 Sum_probs=76.4
Q ss_pred HHHHHHHHcCCcEEEEec--------CCC-chhhHHHHHHHHHHhCCCceEEec-cccCcHHHHHHHHCCCCEEEEcccc
Q psy1056 333 NRLKLLSQAGVDVVILDS--------SQG-NSIYQIEMIKFIKKEYPDMQVIGG-NVLFGYQPRATLLNFIYQIEMIKFI 402 (590)
Q Consensus 333 e~~~~li~~gad~i~V~~--------~~G-~~~~~l~~i~~i~~~~~~vpvi~g-~v~s~~~a~~l~~~Gvd~i~v~~~~ 402 (590)
+.++.--++|++.+.+-. .+| .+....+.++.+++.. ++|++++ .+...+.++.+.++|||+|+.+-..
T Consensus 32 e~A~~ye~~GA~~lsvLe~~~~Di~~~~g~~R~~~~~~i~~i~~~v-~iPvl~k~~i~~ide~qil~aaGAD~Id~s~~~ 110 (297)
T 4adt_A 32 EQAKIAEKAGAIGVMILENIPSELRNTDGVARSVDPLKIEEIRKCI-SINVLAKVRIGHFVEAQILEELKVDMLDESEVL 110 (297)
T ss_dssp HHHHHHHHHTCSEEEECCCCC-----CCCCCCCCCHHHHHHHHTTC-CSEEEEEEETTCHHHHHHHHHTTCSEEEEETTS
T ss_pred HHHHHHHHcCCCEEEEecCCCCcchhcCCcccCCCHHHHHHHHHhc-CCCEEEeccCCcHHHHHHHHHcCCCEEEcCCCC
Confidence 556777788999887762 223 2222578888999887 8999986 4556899999999999999432110
Q ss_pred cccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEEC
Q psy1056 403 KKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMG 459 (590)
Q Consensus 403 ~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g 459 (590)
+.. ..+..+.+ ...++++++ +++|..++.+++.+||+.+.+.
T Consensus 111 ~~~-----------~li~~i~~--~~~g~~vvv--~v~~~~Ea~~a~~~Gad~I~v~ 152 (297)
T 4adt_A 111 TMA-----------DEYNHINK--HKFKTPFVC--GCTNLGEALRRISEGASMIRTK 152 (297)
T ss_dssp CCS-----------CSSCCCCG--GGCSSCEEE--EESSHHHHHHHHHHTCSEEEEC
T ss_pred CHH-----------HHHHHHHh--cCCCCeEEE--EeCCHHHHHHHHhCCCCEEEEC
Confidence 110 00011111 124688998 7999999999999999999665
|
| >1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A* | Back alignment and structure |
|---|
Probab=95.79 E-value=0.082 Score=50.55 Aligned_cols=118 Identities=15% Similarity=0.172 Sum_probs=71.9
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCC--CceEEeccccC----------cHHHHHHHHCCCCEE
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYP--DMQVIGGNVLF----------GYQPRATLLNFIYQI 396 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~--~vpvi~g~v~s----------~~~a~~l~~~Gvd~i 396 (590)
.+..+..+...+.+++.++++.. ++. ..++.+. ++++.. -++. ..+++++++.|||.|
T Consensus 19 ~~i~~l~~~a~~~~~~aVcv~p~------~v~---~~~~~l~~~~v~v~~-vigFP~G~~~~~~k~~e~~~Ai~~GAdev 88 (220)
T 1ub3_A 19 EEVAKAAEEALEYGFYGLCIPPS------YVA---WVRARYPHAPFRLVT-VVGFPLGYQEKEVKALEAALACARGADEV 88 (220)
T ss_dssp HHHHHHHHHHHHHTCSEEECCGG------GHH---HHHHHCTTCSSEEEE-EESTTTCCSCHHHHHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHHHHHhCCCEEEECHH------HHH---HHHHHhCCCCceEEE-EecCCCCCCchHHHHHHHHHHHHcCCCEE
Confidence 34555677788889999987442 122 2222222 344331 1121 257889999999999
Q ss_pred EEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHH----HHHcCCCEEEE
Q psy1056 397 EMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMK----ALALGASTAMM 458 (590)
Q Consensus 397 ~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~k----alalGA~~v~~ 458 (590)
|+-+..+..++ ..|.....-+..+.+.|....+|+|..-+..+..++.+ |..+|||+|=-
T Consensus 89 d~vinig~~~~--g~~~~v~~ei~~v~~a~~~~~lkvIlet~~l~~e~i~~a~~ia~eaGADfVKT 152 (220)
T 1ub3_A 89 DMVLHLGRAKA--GDLDYLEAEVRAVREAVPQAVLKVILETGYFSPEEIARLAEAAIRGGADFLKT 152 (220)
T ss_dssp EEECCHHHHHT--TCHHHHHHHHHHHHHHSTTSEEEEECCGGGSCHHHHHHHHHHHHHHTCSEEEC
T ss_pred EecccchhhhC--CCHHHHHHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHHHhCCCEEEe
Confidence 98443332100 11222344455666666555689999889999998887 45579999933
|
| >3iv3_A Tagatose 1,6-diphosphate aldolase 2; TIM barrel, phosphate binding, tagatose-bisphosphate aldolas tagatose-1,6-bisphosphate aldolase; HET: MSE; 1.80A {Streptococcus mutans} PDB: 3mhf_A 3mhg_A 3jrk_A 3kao_A* 3myp_A 3myo_A | Back alignment and structure |
|---|
Probab=95.66 E-value=0.064 Score=54.37 Aligned_cols=126 Identities=18% Similarity=0.129 Sum_probs=68.2
Q ss_pred HHHHHHcCCcEEEEecC---CCchh---hHHHHHHHH---HHhCCCceEEe-----cc-cc---C-----------cHHH
Q psy1056 335 LKLLSQAGVDVVILDSS---QGNSI---YQIEMIKFI---KKEYPDMQVIG-----GN-VL---F-----------GYQP 385 (590)
Q Consensus 335 ~~~li~~gad~i~V~~~---~G~~~---~~l~~i~~i---~~~~~~vpvi~-----g~-v~---s-----------~~~a 385 (590)
++.+++.|+|++-+... +.... ..+..+..+ ...+ ++|+++ .. +. + ...+
T Consensus 116 ve~a~~~GADAVk~lv~~g~d~~~e~~~~q~~~l~rv~~ec~~~-GiPlllEil~y~~~~~~~~~~~~a~~~p~~V~~a~ 194 (332)
T 3iv3_A 116 IKRLKEAGADAVKFLLYYDVDGDPQVNVQKQAYIERIGSECQAE-DIPFFLEILTYDETISNNSSVEFAKVKVHKVNDAM 194 (332)
T ss_dssp HHHHHHTTCSEEEEEEEECTTSCHHHHHHHHHHHHHHHHHHHHH-TCCEEEEEEECBTTBSCTTSHHHHTTHHHHHHHHH
T ss_pred HHHHHHcCCCEEEEEEEcCCCchHHHHHHHHHHHHHHHHHHHHc-CCceEEEEeccCCCCCCCcchhhhccCHHHHHHHH
Confidence 56678899998876542 21111 122333322 2333 677664 21 11 1 1234
Q ss_pred HHH--HHCCCCEEEEcccccccC-CCccc--ccc-chhHHHHHHHHHhcCCCcEE-ecCCCCCHHHHH----HHHHcCC-
Q psy1056 386 RAT--LLNFIYQIEMIKFIKKEY-PDMQV--IGR-NGTAVYRVAEYASRRGVPVI-ADGGVQSVGHVM----KALALGA- 453 (590)
Q Consensus 386 ~~l--~~~Gvd~i~v~~~~~~~~-~~~~~--~g~-~~~~l~~~~~~~~~~~v~ii-a~GGi~~~~di~----kalalGA- 453 (590)
+.+ .+.|+|.+++........ .||.+ .-+ ..++...+++......+|+| .+||. +..+.. -|+..||
T Consensus 195 R~~~~~elGaDv~Kve~p~~~~~v~g~~~~~~~y~~~ea~~~f~~~~~a~~~P~v~lsgG~-~~~~fl~~v~~A~~aGa~ 273 (332)
T 3iv3_A 195 KVFSAERFGIDVLKVEVPVNMVYVEGFAEGEVVYSKEEAAQAFREQEASTDLPYIYLSAGV-SAELFQETLVFAHKAGAK 273 (332)
T ss_dssp HHHTSGGGCCSEEEECCSSCGGGBTTTCSSCCCBCHHHHHHHHHHHHHTCSSCEEEECTTC-CHHHHHHHHHHHHHHTCC
T ss_pred HHHhhcCcCCcEEEEecCCChhhhcccccccccccHHHHHHHHHHHHhcCCCCEEEECCCC-CHHHHHHHHHHHHHcCCC
Confidence 555 467999998832221110 01111 122 23333345555555679965 69998 454444 4777899
Q ss_pred -CEEEECccc
Q psy1056 454 -STAMMGSLL 462 (590)
Q Consensus 454 -~~v~~g~~l 462 (590)
..|.+||..
T Consensus 274 f~Gv~~GRnv 283 (332)
T 3iv3_A 274 FNGVLCGRAT 283 (332)
T ss_dssp CCEEEECHHH
T ss_pred cceEEeeHHH
Confidence 999999876
|
| >1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A | Back alignment and structure |
|---|
Probab=95.62 E-value=0.075 Score=56.32 Aligned_cols=115 Identities=10% Similarity=0.047 Sum_probs=85.1
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEecccc-CcHHHHHHHHCCCCEEEEcccccccCCC
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVL-FGYQPRATLLNFIYQIEMIKFIKKEYPD 408 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~-s~~~a~~l~~~Gvd~i~v~~~~~~~~~~ 408 (590)
+..+.+....+. +..+.+.+-..+..+-.+.+..+++.. ++|++.|+-. +..+..++..+|||+|-+ +++.+
T Consensus 69 ~~~~iA~~y~~~-A~~IsvLTd~~~F~gs~~dL~~vr~~v-~lPvLrKDFI~d~~Qi~ea~~~GAD~ILL-i~a~l---- 141 (452)
T 1pii_A 69 DPARIAAIYKHY-ASAISVLTDEKYFQGSFNFLPIVSQIA-PQPILCKDFIIDPYQIYLARYYQADACLL-MLSVL---- 141 (452)
T ss_dssp CHHHHHHHHTTT-CSEEEEECCSTTTCCCTTHHHHHHHHC-CSCEEEESCCCSHHHHHHHHHTTCSEEEE-ETTTC----
T ss_pred CHHHHHHHHHhh-CcEEEEEecccccCCCHHHHHHHHHhc-CCCeEEEeccCCHHHHHHHHHcCCCEEEE-EcccC----
Confidence 345566666666 999988776544445567788888887 7999988765 677888899999999943 12211
Q ss_pred ccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEEC
Q psy1056 409 MQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMG 459 (590)
Q Consensus 409 ~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g 459 (590)
+...+.++.+.+...++.+++ =++|..++.+|+.+||+.+++=
T Consensus 142 ------~~~~l~~l~~~a~~lgm~~Lv--Evh~~eE~~~A~~lga~iIGin 184 (452)
T 1pii_A 142 ------DDDQYRQLAAVAHSLEMGVLT--EVSNEEEQERAIALGAKVVGIN 184 (452)
T ss_dssp ------CHHHHHHHHHHHHHTTCEEEE--EECSHHHHHHHHHTTCSEEEEE
T ss_pred ------CHHHHHHHHHHHHHcCCeEEE--EeCCHHHHHHHHHCCCCEEEEe
Confidence 223456666666677888898 6889999999999999998765
|
| >3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A | Back alignment and structure |
|---|
Probab=95.53 E-value=0.026 Score=53.81 Aligned_cols=72 Identities=18% Similarity=0.182 Sum_probs=48.6
Q ss_pred HHHHHHHHCCCCEEEE-cccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcc
Q psy1056 383 YQPRATLLNFIYQIEM-IKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSL 461 (590)
Q Consensus 383 ~~a~~l~~~Gvd~i~v-~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~ 461 (590)
+-++++...|+..+.+ .+ +.. -++-|.. ...+.+.....++|+|+.||+.++.++.+++..||+++++|++
T Consensus 134 ~~i~~~~~~~~~~vli~~~--~~~---g~~~g~~---~~~i~~~~~~~~~Pvia~~g~~~~~~~~~~~~~G~~~~~vg~a 205 (237)
T 3cwo_X 134 DWVVEVEKRGAGEILLTSI--DRD---GTKSGYD---TEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAASV 205 (237)
T ss_dssp HHHHHHHHHTCSEEEEEET--TTT---TCCSCCC---HHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHHTCSEEEESHH
T ss_pred HHHHHHhhcCCCeEEEEec--CCC---Ccccccc---HHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCcHHHhhhHH
Confidence 4456666777775522 21 111 0111222 2234444445579999999999999999999999999999998
Q ss_pred c
Q psy1056 462 L 462 (590)
Q Consensus 462 l 462 (590)
|
T Consensus 206 ~ 206 (237)
T 3cwo_X 206 F 206 (237)
T ss_dssp H
T ss_pred H
Confidence 8
|
| >1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=95.48 E-value=0.17 Score=48.17 Aligned_cols=114 Identities=16% Similarity=0.094 Sum_probs=75.1
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEe---c---c--c---cCcHHHHHHHHCCCCEEE
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIG---G---N--V---LFGYQPRATLLNFIYQIE 397 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~---g---~--v---~s~~~a~~l~~~Gvd~i~ 397 (590)
....+.+..+.++|++.++++. .+.++.+++.. +.|++. + + + .+.+.++.+.++|+|++.
T Consensus 23 ~~~~~~a~~~~~~Ga~~i~~~~--------~~~i~~i~~~~-~~pv~~~~~~~~~~~~~~i~~~~~~i~~~~~~Gad~v~ 93 (223)
T 1y0e_A 23 FIMSKMALAAYEGGAVGIRANT--------KEDILAIKETV-DLPVIGIVKRDYDHSDVFITATSKEVDELIESQCEVIA 93 (223)
T ss_dssp HHHHHHHHHHHHHTCSEEEEES--------HHHHHHHHHHC-CSCEEEECBCCCTTCCCCBSCSHHHHHHHHHHTCSEEE
T ss_pred ccHHHHHHHHHHCCCeeeccCC--------HHHHHHHHHhc-CCCEEeeeccCCCccccccCCcHHHHHHHHhCCCCEEE
Confidence 3456788888899999998742 35688888877 788852 1 1 1 245788899999999985
Q ss_pred EcccccccCCCccccccchhHHHHHHHHHhcC--CCcEEecCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 398 MIKFIKKEYPDMQVIGRNGTAVYRVAEYASRR--GVPVIADGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 398 v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~--~v~iia~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
+....... ....+.++.+.+++. +.+++. ++.+..++.++..+|||+++++...
T Consensus 94 l~~~~~~~---------p~~~~~~~i~~~~~~~~~~~v~~--~~~t~~e~~~~~~~G~d~i~~~~~g 149 (223)
T 1y0e_A 94 LDATLQQR---------PKETLDELVSYIRTHAPNVEIMA--DIATVEEAKNAARLGFDYIGTTLHG 149 (223)
T ss_dssp EECSCSCC---------SSSCHHHHHHHHHHHCTTSEEEE--ECSSHHHHHHHHHTTCSEEECTTTT
T ss_pred EeeecccC---------cccCHHHHHHHHHHhCCCceEEe--cCCCHHHHHHHHHcCCCEEEeCCCc
Confidence 42211110 001122332222222 577777 6789999999999999999887543
|
| >3s1x_A Probable transaldolase; alpha-beta barrel, conformational selection, domain swapping transferase; HET: I22; 1.65A {Thermoplasma acidophilum} PDB: 3s1u_A* 3s1v_A* 3s0c_A* 3s1w_A* | Back alignment and structure |
|---|
Probab=95.46 E-value=0.23 Score=47.37 Aligned_cols=121 Identities=11% Similarity=0.109 Sum_probs=84.9
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCc
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDM 409 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~ 409 (590)
...+.++.+.+.+-+ +.|-.+-- .+| +..++.+.++ ++++-+=-+.|..+|..+.++|+++| |+..+| .
T Consensus 68 ~mi~eA~~L~~~~~n-v~IKIP~T-~eG-l~A~~~L~~~--GI~vn~TlifS~~QA~~Aa~AGa~yI--SPfvgR----i 136 (223)
T 3s1x_A 68 GMVEEARKIHGLGDN-AVVKIPMT-EDG-LRAIKTLSSE--HINTNCTLVFNPIQALLAAKAGVTYV--SPFVGR----L 136 (223)
T ss_dssp HHHHHHHHHHHTCTT-EEEEEESS-HHH-HHHHHHHHHT--TCCEEEEEECSHHHHHHHHHTTCSEE--EEBSHH----H
T ss_pred HHHHHHHHHHHhCCC-EEEEeCCC-HHH-HHHHHHHHHC--CCcEEEEEeCCHHHHHHHHHcCCeEE--Eeecch----H
Confidence 344566777776533 34433211 122 5677777776 67776666779999999999999988 444444 3
Q ss_pred ccccc-chhHHHHHHHHHhcCC--CcEEecCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 410 QVIGR-NGTAVYRVAEYASRRG--VPVIADGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 410 ~~~g~-~~~~l~~~~~~~~~~~--v~iia~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
.+||. ....+.++.+..+.++ ..|++ ..+|++.++..|..+|||.+-+...+
T Consensus 137 ~d~g~dG~~~v~~i~~~~~~~~~~T~Ila-AS~Rn~~~v~~aa~~G~d~~Tip~~v 191 (223)
T 3s1x_A 137 DDIGEDGMQIIDMIRTIFNNYIIKTQILV-ASIRNPIHVLRSAVIGADVVTVPFNV 191 (223)
T ss_dssp HHTTSCTHHHHHHHHHHHHHTTCCSEEEE-BSCCSHHHHHHHHHHTCSEEEECHHH
T ss_pred hhcCCCHHHHHHHHHHHHHHcCCCCEEEE-EeCCCHHHHHHHHHcCCCEEEeCHHH
Confidence 56777 6777778877776654 33444 57999999999999999999888654
|
| >3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A | Back alignment and structure |
|---|
Probab=95.29 E-value=0.019 Score=56.22 Aligned_cols=109 Identities=15% Similarity=0.205 Sum_probs=74.9
Q ss_pred HHHHHHHHHcCCcEEEEec-------CCC-c-hhhHHHHHHHHHHhCCCceEEec-cccCcHHHHHHHHCCCCEEEEccc
Q psy1056 332 KNRLKLLSQAGVDVVILDS-------SQG-N-SIYQIEMIKFIKKEYPDMQVIGG-NVLFGYQPRATLLNFIYQIEMIKF 401 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~-------~~G-~-~~~~l~~i~~i~~~~~~vpvi~g-~v~s~~~a~~l~~~Gvd~i~v~~~ 401 (590)
.+.++..-++|+..+.+.. ..| . +-.-.+.|+.+++.. ++|||.+ -++...+|+.|.++|||+||-+-.
T Consensus 21 ~eqa~iae~aGa~av~~l~~~p~d~r~~gGv~Rm~dp~~I~~I~~aV-sIPVm~k~righ~~EAqilea~GaD~IDesev 99 (291)
T 3o07_A 21 PEQAKIAEKSGACAVMALESIPADMRKSGKVCRMSDPKMIKDIMNSV-SIPVMAKVRIGHFVEAQIIEALEVDYIDESEV 99 (291)
T ss_dssp HHHHHHHHHHTCSEEEECSSCHHHHHTTTCCCCCCCHHHHHHHHTTC-SSCEEEEEETTCHHHHHHHHHTTCSEEEEETT
T ss_pred HHHHHHHHHhCchhhhhccCCCchhhhcCCccccCCHHHHHHHHHhC-CCCeEEEEecCcHHHHHHHHHcCCCEEecccC
Confidence 3556666678998887652 122 1 111278899999988 8999965 456789999999999999965411
Q ss_pred ccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEE
Q psy1056 402 IKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTA 456 (590)
Q Consensus 402 ~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v 456 (590)
.+.. +. ...+.+ ...++|+++ |++|-+++.+++..||+.+
T Consensus 100 ltpa-----d~------~~~I~k--~~f~vpfv~--~~~~l~EAlrri~eGA~mI 139 (291)
T 3o07_A 100 LTPA-----DW------THHIEK--DKFKVPFVC--GAKDLGEALRRINEGAAMI 139 (291)
T ss_dssp SCCS-----CS------SCCCCG--GGCSSCEEE--EESSHHHHHHHHHHTCSEE
T ss_pred CCHH-----HH------HHHhhh--hcCCCcEEe--eCCCHHHHHHHHHCCCCEE
Confidence 1111 00 001111 134689999 9999999999999999988
|
| >3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A* | Back alignment and structure |
|---|
Probab=95.09 E-value=0.19 Score=47.91 Aligned_cols=128 Identities=9% Similarity=0.011 Sum_probs=76.9
Q ss_pred CceEEeEeeccchhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEe--ccccCc-HHHHHHHHCCC
Q psy1056 317 NQLIVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIG--GNVLFG-YQPRATLLNFI 393 (590)
Q Consensus 317 ~~l~v~a~i~~~~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~--g~v~s~-~~a~~l~~~Gv 393 (590)
+++.+.......+...+.++.+ +.+++++.+...-- ...-.+.++.+++.+++.|++. +-...+ ..++.+.++|+
T Consensus 7 ~~lilalD~~~~~~~~~~~~~~-~~~vd~ie~g~~~~-~~~G~~~i~~lr~~~~~~~i~ld~~l~d~p~~~~~~~~~aGa 84 (218)
T 3jr2_A 7 PMIQIALDQTNLTDAVAVASNV-ASYVDVIEVGTILA-FAEGMKAVSTLRHNHPNHILVCDMKTTDGGAILSRMAFEAGA 84 (218)
T ss_dssp CEEEEEECCSSHHHHHHHHHHH-GGGCSEEEECHHHH-HHHTTHHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHHTC
T ss_pred CCeEEEeCCCCHHHHHHHHHHh-cCCceEEEeCcHHH-HhcCHHHHHHHHHhCCCCcEEEEEeecccHHHHHHHHHhcCC
Confidence 4455555554444555666664 66899988753210 0111568899999877666652 211122 25688999999
Q ss_pred CEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEe-cCCCCCHHHHHHHHHcCCCEEEE
Q psy1056 394 YQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIA-DGGVQSVGHVMKALALGASTAMM 458 (590)
Q Consensus 394 d~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia-~GGi~~~~di~kalalGA~~v~~ 458 (590)
|++.+-.+... ..+.++.+.+++.+++.++ -=|..|+.++..+..+|+|.+.+
T Consensus 85 d~i~vh~~~~~------------~~~~~~~~~~~~~g~~~~~d~l~~~T~~~~~~~~~~g~d~v~~ 138 (218)
T 3jr2_A 85 DWITVSAAAHI------------ATIAACKKVADELNGEIQIEIYGNWTMQDAKAWVDLGITQAIY 138 (218)
T ss_dssp SEEEEETTSCH------------HHHHHHHHHHHHHTCEEEEECCSSCCHHHHHHHHHTTCCEEEE
T ss_pred CEEEEecCCCH------------HHHHHHHHHHHHhCCccceeeeecCCHHHHHHHHHcCccceee
Confidence 99944222111 1233444444445666553 33678999999898899998754
|
| >3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=95.00 E-value=0.24 Score=46.64 Aligned_cols=126 Identities=15% Similarity=0.095 Sum_probs=75.9
Q ss_pred EeEeeccchhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEecccc--CcHH-HHHHHHCCCCEEE
Q psy1056 321 VGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVL--FGYQ-PRATLLNFIYQIE 397 (590)
Q Consensus 321 v~a~i~~~~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~--s~~~-a~~l~~~Gvd~i~ 397 (590)
+.......+...+.++.+. .++|++.+-.+.- ..+-.+.++.+++.+++.|+.+.-.. ..+. ++.+.++|+|++.
T Consensus 5 ~a~D~~~~~~~~~~~~~~~-~~~diie~G~p~~-~~~g~~~i~~ir~~~~~~~i~~~~~~~~~~~~~~~~~~~~Gad~v~ 82 (211)
T 3f4w_A 5 LALDELTLPEAMVFMDKVV-DDVDIIEVGTPFL-IREGVNAIKAIKEKYPHKEVLADAKIMDGGHFESQLLFDAGADYVT 82 (211)
T ss_dssp EEECSCCHHHHHHHHHHHG-GGCSEEEECHHHH-HHHTTHHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHTTCSEEE
T ss_pred EEeCCCCHHHHHHHHHHhh-cCccEEEeCcHHH-HhccHHHHHHHHHhCCCCEEEEEEEeccchHHHHHHHHhcCCCEEE
Confidence 3333333344555666663 5889887643110 11225788999988778888653322 2344 8899999999994
Q ss_pred EcccccccCCCccccccchhHHHHHHHHHhcCCCcEEec-CCCCCHHH-HHHHHHcCCCEEEECc
Q psy1056 398 MIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIAD-GGVQSVGH-VMKALALGASTAMMGS 460 (590)
Q Consensus 398 v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~-GGi~~~~d-i~kalalGA~~v~~g~ 460 (590)
+.... ....+.++.+.+++.+++++.+ -+..++.+ +.+++.+|+|.+.+.+
T Consensus 83 v~~~~------------~~~~~~~~~~~~~~~g~~~~v~~~~~~t~~~~~~~~~~~g~d~i~v~~ 135 (211)
T 3f4w_A 83 VLGVT------------DVLTIQSCIRAAKEAGKQVVVDMICVDDLPARVRLLEEAGADMLAVHT 135 (211)
T ss_dssp EETTS------------CHHHHHHHHHHHHHHTCEEEEECTTCSSHHHHHHHHHHHTCCEEEEEC
T ss_pred EeCCC------------ChhHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHcCCCEEEEcC
Confidence 42111 1122344555555557777764 35567644 6778889999986643
|
| >3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri} | Back alignment and structure |
|---|
Probab=94.86 E-value=0.19 Score=47.16 Aligned_cols=116 Identities=17% Similarity=0.133 Sum_probs=68.5
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEe--ccccC-cHH-HHHHHHCCCCEEEEcccccc
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIG--GNVLF-GYQ-PRATLLNFIYQIEMIKFIKK 404 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~--g~v~s-~~~-a~~l~~~Gvd~i~v~~~~~~ 404 (590)
+...+.++.+.+ +++.+.+....- ...-.+.++.+++.+|+.|+++ + +.+ +++ ++.+.++|+|++-|.....
T Consensus 13 ~~~~~~~~~~~~-~v~~iev~~~~~-~~~g~~~i~~l~~~~~~~~i~~~l~-~~di~~~~~~~a~~~Gad~v~vh~~~~- 88 (207)
T 3ajx_A 13 EAALELAGKVAE-YVDIIELGTPLI-KAEGLSVITAVKKAHPDKIVFADMK-TMDAGELEADIAFKAGADLVTVLGSAD- 88 (207)
T ss_dssp HHHHHHHHHHGG-GCSEEEECHHHH-HHHCTHHHHHHHHHSTTSEEEEEEE-ECSCHHHHHHHHHHTTCSEEEEETTSC-
T ss_pred HHHHHHHHHhhc-cCCEEEECcHHH-HhhCHHHHHHHHHhCCCCeEEEEEE-ecCccHHHHHHHHhCCCCEEEEeccCC-
Confidence 344556666656 889988844220 1111467888898887778774 4 345 556 8889999999994422211
Q ss_pred cCCCccccccchhHHHHHHHHHhcCCCcEEe-cCCCCCHHHHHH-HHHcCCCEEEEC
Q psy1056 405 EYPDMQVIGRNGTAVYRVAEYASRRGVPVIA-DGGVQSVGHVMK-ALALGASTAMMG 459 (590)
Q Consensus 405 ~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia-~GGi~~~~di~k-alalGA~~v~~g 459 (590)
...+.++.+.+++.+.++-. --...|+.+.++ +..+|+|.|.+.
T Consensus 89 -----------~~~~~~~~~~~~~~g~~~gv~~~s~~~p~~~~~~~~~~g~d~v~~~ 134 (207)
T 3ajx_A 89 -----------DSTIAGAVKAAQAHNKGVVVDLIGIEDKATRAQEVRALGAKFVEMH 134 (207)
T ss_dssp -----------HHHHHHHHHHHHHHTCEEEEECTTCSSHHHHHHHHHHTTCSEEEEE
T ss_pred -----------hHHHHHHHHHHHHcCCceEEEEecCCChHHHHHHHHHhCCCEEEEE
Confidence 12233455555444666522 113337777444 446799998443
|
| >3r8r_A Transaldolase; pentose phosphate pathway, schiff bases; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=94.86 E-value=0.075 Score=50.31 Aligned_cols=122 Identities=13% Similarity=0.081 Sum_probs=82.8
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCc
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDM 409 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~ 409 (590)
...+.++.+.+.+-+ +.|-.+-- .+| +..++.+.+. ++++-+=-+.|..+|..+.++|+++| |+..+| .
T Consensus 66 ~mi~ea~~l~~~~~n-v~IKIP~T-~eG-l~A~~~L~~~--GI~vn~TlifS~~Qa~~Aa~AGa~yI--SPfvgR----i 134 (212)
T 3r8r_A 66 EMIEEGKELAKIAPN-ITVKIPMT-SDG-LKAVRALTDL--GIKTNVTLIFNANQALLAARAGATYV--SPFLGR----L 134 (212)
T ss_dssp HHHHHHHHHHTTCTT-EEEEEESS-HHH-HHHHHHHHHT--TCCEEEEEECSHHHHHHHHHHTCSEE--EEBHHH----H
T ss_pred HHHHHHHHHHHhCCC-EEEEeCCC-HHH-HHHHHHHHHC--CCcEEEEEeCCHHHHHHHHHcCCeEE--Eeccch----h
Confidence 334556666666433 33433211 122 5677777776 67776666779999999999999988 444444 3
Q ss_pred ccccc-chhHHHHHHHHHhcCC-CcEEecCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 410 QVIGR-NGTAVYRVAEYASRRG-VPVIADGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 410 ~~~g~-~~~~l~~~~~~~~~~~-v~iia~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
.+||. ....+.++.+..+.++ -.-|..-.+|++.++..|..+|||.+-+...+
T Consensus 135 ~d~~~dG~~~v~~i~~~~~~~~~~t~ilaAS~R~~~~v~~~a~~G~d~~Tip~~v 189 (212)
T 3r8r_A 135 DDIGHNGLDLISEVKQIFDIHGLDTQIIAASIRHPQHVTEAALRGAHIGTMPLKV 189 (212)
T ss_dssp HHTTSCHHHHHHHHHHHHHHHTCCCEEEEBSCCSHHHHHHHHHTTCSEEEECHHH
T ss_pred hhcCCChHHHHHHHHHHHHHcCCCCEEEEecCCCHHHHHHHHHcCCCEEEcCHHH
Confidence 56777 6666777777766544 23333458999999999999999999887654
|
| >2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=94.75 E-value=0.12 Score=53.98 Aligned_cols=63 Identities=17% Similarity=0.285 Sum_probs=51.1
Q ss_pred EeccccccccCCCCCCC-CccCCcccccccccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCC
Q psy1056 69 VTSRDVDFLENSANMDL-KIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGT 134 (590)
Q Consensus 69 vT~~Did~l~~~~~~~~-~~~~~~~~~l~~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~ 134 (590)
.+++ |+.+.|++... ++++++++.+. ...++.|++.++|+.++...++.+++..|+.++++.+
T Consensus 36 ~~fd--~v~l~p~~~~~~~~~vdlst~l~-g~~l~~Pii~Apm~g~~~~~~a~a~a~~G~~gvl~~~ 99 (393)
T 2qr6_A 36 YSLD--DISVVSSRRTRSSKDVDTTWHID-AYKFDLPFMNHPSDALASPEFVIEMGKQGGLGVINAE 99 (393)
T ss_dssp CCGG--GEEECCCSCCCCGGGCBCCEEET-TEEESSSEEECCCTTTCCHHHHHHHHHTTSBCEEETT
T ss_pred CChh--hEEEccCCCCCChhHCCceeEEc-ccccCCCeEeCCCCCcccHHHHHHHHHcCCcEEEEec
Confidence 5677 67777875555 67888888884 6778999999999999888888889999999988754
|
| >3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=94.72 E-value=0.28 Score=50.58 Aligned_cols=113 Identities=13% Similarity=0.077 Sum_probs=69.6
Q ss_pred HHHHHHHHHc-CCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccc-cCcHHHHHHHHCCCCEEEEcccccccCCCc
Q psy1056 332 KNRLKLLSQA-GVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNV-LFGYQPRATLLNFIYQIEMIKFIKKEYPDM 409 (590)
Q Consensus 332 ~e~~~~li~~-gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v-~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~ 409 (590)
.+.+.++..+ |+.+++ .+-..+...+.++.+++.. ..|+.+.-. .+.+.++.++++|+|+|.+... .
T Consensus 59 ~~lA~avA~~GGlgii~---~~~s~e~~~~~I~~vk~~~-~~pvga~ig~~~~e~a~~l~eaGad~I~ld~a--~----- 127 (361)
T 3khj_A 59 HLMAVGMARLGGIGIIH---KNMDMESQVNEVLKVKNSG-GLRVGAAIGVNEIERAKLLVEAGVDVIVLDSA--H----- 127 (361)
T ss_dssp HHHHHHHHHTTCEEEEC---SSSCHHHHHHHHHHHHHTT-CCCCEEEECTTCHHHHHHHHHTTCSEEEECCS--C-----
T ss_pred HHHHHHHHHcCCCeEEe---cCCCHHHHHHHHHHHHhcc-CceEEEEeCCCHHHHHHHHHHcCcCeEEEeCC--C-----
Confidence 3555555555 444543 2223455667778777653 566554322 2378899999999999844211 1
Q ss_pred cccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEEC
Q psy1056 410 QVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMG 459 (590)
Q Consensus 410 ~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g 459 (590)
|.....+..+....+..++|+|+ |.+.++.++.++..+|||+|.+|
T Consensus 128 ---G~~~~~~~~i~~i~~~~~~~Viv-g~v~t~e~A~~l~~aGaD~I~VG 173 (361)
T 3khj_A 128 ---GHSLNIIRTLKEIKSKMNIDVIV-GNVVTEEATKELIENGADGIKVG 173 (361)
T ss_dssp ---CSBHHHHHHHHHHHHHCCCEEEE-EEECSHHHHHHHHHTTCSEEEEC
T ss_pred ---CCcHHHHHHHHHHHHhcCCcEEE-ccCCCHHHHHHHHHcCcCEEEEe
Confidence 11111112233333334789998 67899999999999999999886
|
| >4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=94.67 E-value=0.076 Score=51.65 Aligned_cols=73 Identities=16% Similarity=0.129 Sum_probs=51.1
Q ss_pred HHHHHHHHCCCCEEEE-cccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcc
Q psy1056 383 YQPRATLLNFIYQIEM-IKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSL 461 (590)
Q Consensus 383 ~~a~~l~~~Gvd~i~v-~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~ 461 (590)
+.|+...+.|+|.+-+ .+..... +.......+ .+.++...+|+-..||||+-.++.+.|.+||+-|.+|+.
T Consensus 35 ~~a~~~~~~gad~lhvvDld~a~~-----~~~~~~~~i---~~i~~~~~~pl~vGGGIrs~e~~~~~l~~GadkVii~t~ 106 (243)
T 4gj1_A 35 KKFKEYEKAGAKELHLVDLTGAKD-----PSKRQFALI---EKLAKEVSVNLQVGGGIRSKEEVKALLDCGVKRVVIGSM 106 (243)
T ss_dssp HHHHHHHHHTCCEEEEEEHHHHHC-----GGGCCHHHH---HHHHHHCCSEEEEESSCCCHHHHHHHHHTTCSEEEECTT
T ss_pred HHHHHHHHCCCCEEEEEecCcccc-----cchhHHHHH---HHHHHhcCCCeEeccccccHHHHHHHHHcCCCEEEEccc
Confidence 5677888899998865 2221111 001122233 334445679999999999999999999999999999976
Q ss_pred cc
Q psy1056 462 LA 463 (590)
Q Consensus 462 l~ 463 (590)
..
T Consensus 107 a~ 108 (243)
T 4gj1_A 107 AI 108 (243)
T ss_dssp TT
T ss_pred cc
Confidence 54
|
| >1mdl_A Mandelate racemase; isomerase, mandelate pathway, magnesium; HET: RMN SMN; 1.85A {Pseudomonas aeruginosa} SCOP: c.1.11.2 d.54.1.1 PDB: 1mdr_A* 3uxk_A* 3uxl_A* 1dtn_A* 1mra_A* 2mnr_A 1mns_A | Back alignment and structure |
|---|
Probab=94.66 E-value=0.29 Score=50.33 Aligned_cols=118 Identities=15% Similarity=0.072 Sum_probs=82.4
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhC-CCceEEeccc--cCcHHH----HHHHHCCCCEEEEcccc
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEY-PDMQVIGGNV--LFGYQP----RATLLNFIYQIEMIKFI 402 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~-~~vpvi~g~v--~s~~~a----~~l~~~Gvd~i~v~~~~ 402 (590)
...+.+..+.+.|.+.+-++...++....++.++.+++.+ +++++.+.-- -+.+++ +.|.+.|+++| +-
T Consensus 147 ~~~~~a~~~~~~Gf~~iKik~g~~~~~~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~i----E~ 222 (359)
T 1mdl_A 147 LATERAVTAAELGFRAVKTRIGYPALDQDLAVVRSIRQAVGDDFGIMVDYNQSLDVPAAIKRSQALQQEGVTWI----EE 222 (359)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCCSSHHHHHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHHHHTCSCE----EC
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCCHHHHHHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHHHhCCCeE----EC
Confidence 3446677788899999999876655566788999999887 5788886422 255555 45666899988 21
Q ss_pred cccCCCcccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcC-CCEEEECccc
Q psy1056 403 KKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALG-ASTAMMGSLL 462 (590)
Q Consensus 403 ~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalG-A~~v~~g~~l 462 (590)
. + .. ... ..++..+..++||++++.+.++.++.+++..| +|+|++....
T Consensus 223 --P---~---~~~~~~---~~~~l~~~~~iPI~~de~~~~~~~~~~~i~~~~~d~v~ik~~~ 273 (359)
T 1mdl_A 223 --P---T---LQHDYE---GHQRIQSKLNVPVQMGENWLGPEEMFKALSIGACRLAMPDAMK 273 (359)
T ss_dssp --C---S---CTTCHH---HHHHHHHTCSSCEEECTTCCSHHHHHHHHHTTCCSEECCBTTT
T ss_pred --C---C---ChhhHH---HHHHHHHhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEeecchh
Confidence 1 1 11 222 23333334579999999999999999999987 7888776544
|
| >2ovl_A Putative racemase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.13A {Streptomyces coelicolor A3} PDB: 3ck5_A | Back alignment and structure |
|---|
Probab=94.56 E-value=0.43 Score=49.29 Aligned_cols=118 Identities=8% Similarity=-0.006 Sum_probs=82.7
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhC-CCceEEeccc--cCcHHH----HHHHHCCCCEEEEcccc
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEY-PDMQVIGGNV--LFGYQP----RATLLNFIYQIEMIKFI 402 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~-~~vpvi~g~v--~s~~~a----~~l~~~Gvd~i~v~~~~ 402 (590)
...+.+..+.+.|.+.+-+....++....++.++.+++.+ |++++.+.-- -+.+++ +.|.+.|+++| +-
T Consensus 149 ~~~~~a~~~~~~Gf~~iKik~g~~~~~~~~e~v~avr~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~i----Eq 224 (371)
T 2ovl_A 149 DLKTQADRFLAGGFRAIKMKVGRPDLKEDVDRVSALREHLGDSFPLMVDANMKWTVDGAIRAARALAPFDLHWI----EE 224 (371)
T ss_dssp HHHHHHHHHHHTTCSCEEEECCCSSHHHHHHHHHHHHHHHCTTSCEEEECTTCSCHHHHHHHHHHHGGGCCSEE----EC
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEE----EC
Confidence 3456677788899999998877666666688899999877 5788876422 255555 44556899988 21
Q ss_pred cccCCCcccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcC-CCEEEECccc
Q psy1056 403 KKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALG-ASTAMMGSLL 462 (590)
Q Consensus 403 ~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalG-A~~v~~g~~l 462 (590)
. + .. ....+.++++. .++||++++.+.+..++.+++..| +|.|++....
T Consensus 225 --P---~---~~~d~~~~~~l~~~---~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~~ 275 (371)
T 2ovl_A 225 --P---T---IPDDLVGNARIVRE---SGHTIAGGENLHTLYDFHNAVRAGSLTLPEPDVSN 275 (371)
T ss_dssp --C---S---CTTCHHHHHHHHHH---HCSCEEECTTCCSHHHHHHHHHHTCCSEECCCTTT
T ss_pred --C---C---CcccHHHHHHHHhh---CCCCEEeCCCCCCHHHHHHHHHcCCCCEEeeCccc
Confidence 1 1 11 23333444433 369999999999999999999987 7888776544
|
| >4gbu_A NADPH dehydrogenase 1; alpha/beta barrel, enenone reductase, alkene reductase, NADP oxidoreductase, carvone, enenatioselectivity; HET: 0WV 1PE FMN; 1.18A {Saccharomyces pastorianus} PDB: 4ge8_A* 1oya_A* 1oyb_A* 1oyc_A* 3tx9_A* 3rnd_A* 1k02_A* 1k03_A* 1bwk_A* 1bwl_A* | Back alignment and structure |
|---|
Probab=94.45 E-value=0.063 Score=56.30 Aligned_cols=132 Identities=14% Similarity=0.083 Sum_probs=75.4
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCc-----------------------h-hhHHHHHHHHHHhCCCceEEecc-------
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGN-----------------------S-IYQIEMIKFIKKEYPDMQVIGGN------- 378 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~-----------------------~-~~~l~~i~~i~~~~~~vpvi~g~------- 378 (590)
...+.+....++|.|.|.|+.+||+ + ++.++.++.+|+.+++-||.+.=
T Consensus 173 ~F~~AA~rA~~AGFDgVEIH~AhGYLl~QFLSp~tN~RtDeYGGS~ENR~Rf~lEVi~aVr~~vg~d~vgvRlS~~~~~~ 252 (400)
T 4gbu_A 173 EYVQAAKNSIAAGADGVEIHSANGYLLNQFLDPHSNTRTDEYGGSIENRARFTLEVVDALVEAIGHEKVGLRLSPYGVFN 252 (400)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECTTCCTT
T ss_pred HHHHHHHHHHhcCcCeeeecccccchHHheecCcCCCCccccCCcHHHHHHHHHHHHHHHHHHcCCCcEEEEeccccccC
Confidence 4456788888999999999976531 1 44578999999988655776431
Q ss_pred -ccC----------cHHHHHHHH---CC--CCEEEEcc-cccccCCCccccc-cchhHHHHHHHHHhcCCCcEEecCCCC
Q psy1056 379 -VLF----------GYQPRATLL---NF--IYQIEMIK-FIKKEYPDMQVIG-RNGTAVYRVAEYASRRGVPVIADGGVQ 440 (590)
Q Consensus 379 -v~s----------~~~a~~l~~---~G--vd~i~v~~-~~~~~~~~~~~~g-~~~~~l~~~~~~~~~~~v~iia~GGi~ 440 (590)
..+ .+.+..|.. +| .+++.+.. ...... ...+.+ +.......+++. .++|+|+.||+.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ir~~---~~~pvi~~G~~~ 328 (400)
T 4gbu_A 253 SMSGGAETGIVAQYAYVAGELEKRAKAGKRLAFVHLVEPRVTNPF-LTEGEGEYEGGSNDFVYSI---WKGPVIRAGNFA 328 (400)
T ss_dssp TCCGGGSTTHHHHHHHHHHHHHHHHHTTCCCSEEEEECTTCSSTT-SCTTTTCCCSCCSTHHHHH---CCSCEEEESSCT
T ss_pred CCCccchhhhHHHHHHHHHHHHHhhccCccccceeeecccCCCcc-cccccchhhhHHHHHHHHH---hCCCEEEeCCCC
Confidence 000 112223322 22 23443311 000000 000111 111111113322 368999999999
Q ss_pred CHHHHHHHHHc-CCCEEEECccccCC
Q psy1056 441 SVGHVMKALAL-GASTAMMGSLLAGT 465 (590)
Q Consensus 441 ~~~di~kalal-GA~~v~~g~~l~~~ 465 (590)
+..+++.++.. |||+|.+|++|..-
T Consensus 329 ~~~~~~~~~~~~~aDlV~~gR~~iad 354 (400)
T 4gbu_A 329 LHPEVVREEVKDKRTLIGYGRFFISN 354 (400)
T ss_dssp TCHHHHHHHTTSTTEEEECCHHHHHC
T ss_pred ChHHHHHHHHcCCCeEhHHHHHHHHC
Confidence 98888877654 69999999988643
|
| >2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A* | Back alignment and structure |
|---|
Probab=94.32 E-value=0.19 Score=47.94 Aligned_cols=109 Identities=15% Similarity=0.140 Sum_probs=69.0
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCchhhH---HHHH---HHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccc
Q psy1056 331 DKNRLKLLSQAGVDVVILDSSQGNSIYQ---IEMI---KFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKK 404 (590)
Q Consensus 331 ~~e~~~~li~~gad~i~V~~~~G~~~~~---l~~i---~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~ 404 (590)
..+.++.+.+.|++.+++....+....+ .+.+ ..+...+ ++++++. +.++.+.++|+|++-+ ..
T Consensus 33 ~~~~~~~~~~~G~~~i~l~~~~~~~~~~~~~~~~~~~l~~~~~~~-~v~v~v~-----~~~~~a~~~gad~v~l----~~ 102 (227)
T 2tps_A 33 PVTVVQKALKGGATLYQFREKGGDALTGEARIKFAEKAQAACREA-GVPFIVN-----DDVELALNLKADGIHI----GQ 102 (227)
T ss_dssp HHHHHHHHHHHTCSEEEECCCSTTCCCHHHHHHHHHHHHHHHHHH-TCCEEEE-----SCHHHHHHHTCSEEEE----CT
T ss_pred HHHHHHHHHHCCCCEEEEecCCCCHhHHHHHHHHHHHHHHHHHHc-CCeEEEc-----CHHHHHHHcCCCEEEE----CC
Confidence 5677888999999999988655444333 3333 3333444 6777773 4567788899999932 11
Q ss_pred cCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 405 EYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 405 ~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
. .. .+.++++.. +. ++..-.+.|+.++.++...|||++.+|+.|.
T Consensus 103 ~---------~~-~~~~~~~~~---g~-~~~~~s~~t~~e~~~a~~~g~d~v~~~~v~~ 147 (227)
T 2tps_A 103 E---------DA-NAKEVRAAI---GD-MILGVSAHTMSEVKQAEEDGADYVGLGPIYP 147 (227)
T ss_dssp T---------SS-CHHHHHHHH---TT-SEEEEEECSHHHHHHHHHHTCSEEEECCSSC
T ss_pred C---------cc-CHHHHHHhc---CC-cEEEEecCCHHHHHHHHhCCCCEEEECCCcC
Confidence 1 11 123333322 23 3331124799999999999999999988763
|
| >1rvk_A Isomerase/lactonizing enzyme; enolase superfamily, MR.GI-17937161, NYSGXRC, target T1522, structural genomics, PSI; 1.70A {Agrobacterium tumefaciens} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=94.22 E-value=0.73 Score=47.69 Aligned_cols=119 Identities=12% Similarity=0.056 Sum_probs=81.7
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCC------chhhHHHHHHHHHHhC-CCceEEeccc--cCcHHH----HHHHHCCCCE
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQG------NSIYQIEMIKFIKKEY-PDMQVIGGNV--LFGYQP----RATLLNFIYQ 395 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G------~~~~~l~~i~~i~~~~-~~vpvi~g~v--~s~~~a----~~l~~~Gvd~ 395 (590)
+...+.+..+.+.|.+.+-++..++ +....++.++.+++.+ |++++.+.-- -+.++| +.|.+.|+++
T Consensus 151 e~~~~~a~~~~~~Gf~~iKik~g~~~~~~~~~~~~~~e~v~avr~a~g~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~ 230 (382)
T 1rvk_A 151 EDYGRFAETLVKRGYKGIKLHTWMPPVSWAPDVKMDLKACAAVREAVGPDIRLMIDAFHWYSRTDALALGRGLEKLGFDW 230 (382)
T ss_dssp HHHHHHHHHHHHHTCSEEEEECCCTTSTTCCCHHHHHHHHHHHHHHHCTTSEEEEECCTTCCHHHHHHHHHHHHTTTCSE
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCcCccccccchHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCE
Confidence 3445677778888999999887664 4456678899999876 5788886422 255555 4455689998
Q ss_pred EEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCC-HHHHHHHHHcC-CCEEEECcc
Q psy1056 396 IEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQS-VGHVMKALALG-ASTAMMGSL 461 (590)
Q Consensus 396 i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~-~~di~kalalG-A~~v~~g~~ 461 (590)
| +-- +... ....+..++ +..++||++++.+.+ ..++.+++..| +|.|++-..
T Consensus 231 i----E~P-----~~~~--~~~~~~~l~---~~~~iPIa~dE~~~~~~~~~~~~i~~~~~d~v~ik~~ 284 (382)
T 1rvk_A 231 I----EEP-----MDEQ--SLSSYKWLS---DNLDIPVVGPESAAGKHWHRAEWIKAGACDILRTGVN 284 (382)
T ss_dssp E----ECC-----SCTT--CHHHHHHHH---HHCSSCEEECSSCSSHHHHHHHHHHTTCCSEEEECHH
T ss_pred E----eCC-----CChh--hHHHHHHHH---hhCCCCEEEeCCccCcHHHHHHHHHcCCCCEEeeCch
Confidence 8 211 1000 222333333 345799999999999 99999999987 688877543
|
| >1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=94.22 E-value=0.3 Score=46.83 Aligned_cols=109 Identities=17% Similarity=0.054 Sum_probs=72.4
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEe---cc-----c---cCcHHHHHHHHCCCCEEEE
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIG---GN-----V---LFGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~---g~-----v---~s~~~a~~l~~~Gvd~i~v 398 (590)
...+.++.+.++|++.++++. .+.++.+++.. ++|++. ++ + .+.+.++.+.++|+|+|.+
T Consensus 37 ~~~~~a~~~~~~G~~~i~~~~--------~~~i~~i~~~~-~~p~i~~~~~~~~~~~~~i~~~~~~i~~~~~~Gad~V~l 107 (234)
T 1yxy_A 37 IMPLMAKAAQEAGAVGIRANS--------VRDIKEIQAIT-DLPIIGIIKKDYPPQEPFITATMTEVDQLAALNIAVIAM 107 (234)
T ss_dssp SHHHHHHHHHHHTCSEEEEES--------HHHHHHHHTTC-CSCEEEECBCCCTTSCCCBSCSHHHHHHHHTTTCSEEEE
T ss_pred hHHHHHHHHHHCCCcEeecCC--------HHHHHHHHHhC-CCCEEeeEcCCCCccccccCChHHHHHHHHHcCCCEEEE
Confidence 456788899999999998852 34577777776 688751 11 1 1457899999999999955
Q ss_pred cccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEE
Q psy1056 399 IKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTA 456 (590)
Q Consensus 399 ~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v 456 (590)
....... ..|. ....+..+++... +.+++. ++.+..++.+++.+|||++
T Consensus 108 ~~~~~~~-----~~~~~~~~~i~~i~~~~~--~~~v~~--~~~t~~ea~~a~~~Gad~i 157 (234)
T 1yxy_A 108 DCTKRDR-----HDGLDIASFIRQVKEKYP--NQLLMA--DISTFDEGLVAHQAGIDFV 157 (234)
T ss_dssp ECCSSCC-----TTCCCHHHHHHHHHHHCT--TCEEEE--ECSSHHHHHHHHHTTCSEE
T ss_pred cccccCC-----CCCccHHHHHHHHHHhCC--CCeEEE--eCCCHHHHHHHHHcCCCEE
Confidence 3222111 0011 1223333443321 577777 7889999999999999999
|
| >1vkf_A Glycerol uptake operon antiterminator-related Pro; struc genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: CIT; 1.65A {Thermotoga maritima} SCOP: c.1.29.1 | Back alignment and structure |
|---|
Probab=94.20 E-value=0.03 Score=51.85 Aligned_cols=31 Identities=26% Similarity=0.219 Sum_probs=28.9
Q ss_pred CCCcEEecCCCCCHHHHHHHHHcCCCEEEECc
Q psy1056 429 RGVPVIADGGVQSVGHVMKALALGASTAMMGS 460 (590)
Q Consensus 429 ~~v~iia~GGi~~~~di~kalalGA~~v~~g~ 460 (590)
.++|+||.|+|++.+|+.. +..||++|.-|.
T Consensus 148 ~~~PiIaGGlI~t~edv~~-l~aGA~aIsTs~ 178 (188)
T 1vkf_A 148 PGRTVIAAGLVETEEEARE-ILKHVSAISTSS 178 (188)
T ss_dssp TTSEEEEESCCCSHHHHHH-HTTTSSEEEECC
T ss_pred cCCCEEEECCcCCHHHHHH-HHCCCeEEEeCC
Confidence 4689999999999999999 999999998885
|
| >2pgw_A Muconate cycloisomerase; enolase superfamily, octamer, small metabolism, PSI-II, NYSGXRC, structural genomics, PR structure initiative; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.19 E-value=0.73 Score=47.75 Aligned_cols=118 Identities=15% Similarity=0.072 Sum_probs=81.3
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEecc--ccCcHHH----HHHHHCCCCEEEEccccc
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGN--VLFGYQP----RATLLNFIYQIEMIKFIK 403 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~--v~s~~~a----~~l~~~Gvd~i~v~~~~~ 403 (590)
...+.+..+.+.|.+.+-+.... ......+.++.+++.+++.++.+.- .-+.+++ +.|.+.|+++| +
T Consensus 150 ~~~~~a~~~~~~Gf~~iKik~g~-~~~~~~e~v~avr~a~gd~~l~vD~n~~~~~~~a~~~~~~l~~~~i~~i----E-- 222 (384)
T 2pgw_A 150 ELARDAAVGHAQGERVFYLKVGR-GEKLDLEITAAVRGEIGDARLRLDANEGWSVHDAINMCRKLEKYDIEFI----E-- 222 (384)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCS-CHHHHHHHHHHHHTTSTTCEEEEECTTCCCHHHHHHHHHHHGGGCCSEE----E--
T ss_pred HHHHHHHHHHHcCCCEEEECcCC-CHHHHHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHhcCCCEE----e--
Confidence 44567778889999999887643 4455678899999888767777631 1255555 44556899988 2
Q ss_pred ccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcC-CCEEEECccc
Q psy1056 404 KEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALG-ASTAMMGSLL 462 (590)
Q Consensus 404 ~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalG-A~~v~~g~~l 462 (590)
.. +..+ ....+.+++ +..++||++++.+.++.++.+++..| +|.|++....
T Consensus 223 qP---~~~~--~~~~~~~l~---~~~~iPI~~de~i~~~~~~~~~i~~~~~d~v~ik~~~ 274 (384)
T 2pgw_A 223 QP---TVSW--SIPAMAHVR---EKVGIPIVADQAAFTLYDVYEICRQRAADMICIGPRE 274 (384)
T ss_dssp CC---SCTT--CHHHHHHHH---HHCSSCEEESTTCCSHHHHHHHHHTTCCSEEEECHHH
T ss_pred CC---CChh--hHHHHHHHH---hhCCCCEEEeCCcCCHHHHHHHHHcCCCCEEEEcchh
Confidence 11 1100 223333343 34579999999999999999999987 7999886443
|
| >2og9_A Mandelate racemase/muconate lactonizing enzyme; NYSGXRC, protein structure initiative (PSI) II, PSI-2, 9382A mandelate racemase; 1.90A {Polaromonas SP} PDB: 3cb3_A* | Back alignment and structure |
|---|
Probab=94.17 E-value=0.4 Score=49.98 Aligned_cols=116 Identities=10% Similarity=-0.001 Sum_probs=80.5
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhC-CCceEEecc--ccCcHHHH----HHHHCCCCEEEEcccc
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEY-PDMQVIGGN--VLFGYQPR----ATLLNFIYQIEMIKFI 402 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~-~~vpvi~g~--v~s~~~a~----~l~~~Gvd~i~v~~~~ 402 (590)
...+.+..+.+.|.+.+-+....++....++.++.+++.+ +++++.+.- .-+.+++. .|.+.|+++| +-
T Consensus 165 ~~~~~a~~~~~~Gf~~vKik~g~~~~~~~~e~v~avR~avg~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~i----E~ 240 (393)
T 2og9_A 165 QLMVNASASIERGIGGIKLKVGQPDGALDIARVTAVRKHLGDAVPLMVDANQQWDRPTAQRMCRIFEPFNLVWI----EE 240 (393)
T ss_dssp HHHHHHHHHHHTTCCCEEEECCCSCHHHHHHHHHHHHHHHCTTSCEEEECTTCCCHHHHHHHHHHHGGGCCSCE----EC
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEE----EC
Confidence 3456777788999999998877655666788899999886 578887642 22666654 4455788887 21
Q ss_pred cccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcC-CCEEEEC
Q psy1056 403 KKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALG-ASTAMMG 459 (590)
Q Consensus 403 ~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalG-A~~v~~g 459 (590)
. +..+ .... .++..+..++||++++.+.++.++.+++..| +|+|++-
T Consensus 241 --P---~~~~--~~~~---~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik 288 (393)
T 2og9_A 241 --P---LDAY--DHEG---HAALALQFDTPIATGEMLTSAAEHGDLIRHRAADYLMPD 288 (393)
T ss_dssp --C---SCTT--CHHH---HHHHHHHCSSCEEECTTCCSHHHHHHHHHTTCCSEECCC
T ss_pred --C---CCcc--cHHH---HHHHHHhCCCCEEeCCCcCCHHHHHHHHHCCCCCEEeeC
Confidence 1 1100 2222 3333334579999999999999999999998 7888764
|
| >1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=94.15 E-value=0.47 Score=45.83 Aligned_cols=62 Identities=13% Similarity=0.105 Sum_probs=43.7
Q ss_pred HHHHHHHcC----CcEEEEecCCCchhhHHHHHHHHHHhCCCceEEec-cccCcHHHHHHHHCCCCEEEE
Q psy1056 334 RLKLLSQAG----VDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGG-NVLFGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 334 ~~~~li~~g----ad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g-~v~s~~~a~~l~~~Gvd~i~v 398 (590)
++....+.+ ..++-++. .|. ....+.++.+++..++.|+++| ++.++++++++.+ |||.+.|
T Consensus 143 ~~~~~a~~g~~~~~~~VYl~s-~G~-~~~~~~i~~i~~~~~~~Pv~vGgGI~t~e~a~~~~~-gAd~VIV 209 (240)
T 1viz_A 143 DIVAYARVSELLQLPIFYLEY-SGV-LGDIEAVKKTKAVLETSTLFYGGGIKDAETAKQYAE-HADVIVV 209 (240)
T ss_dssp HHHHHHHHHHHTTCSEEEEEC-TTS-CCCHHHHHHHHHTCSSSEEEEESSCCSHHHHHHHHT-TCSEEEE
T ss_pred HHHHHHHhCcccCCCEEEEeC-CCc-cChHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHh-CCCEEEE
Confidence 444444443 36676666 453 3346788888887656898875 5559999999988 9999955
|
| >2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A* | Back alignment and structure |
|---|
Probab=94.13 E-value=0.085 Score=52.86 Aligned_cols=111 Identities=14% Similarity=0.189 Sum_probs=72.9
Q ss_pred HHHHHHHHHcCCcEEEEecC--------CCc-hhhHHHHHHHHHHhCCCceEEec-cccCcHHHHHHHHCCCCEEEEccc
Q psy1056 332 KNRLKLLSQAGVDVVILDSS--------QGN-SIYQIEMIKFIKKEYPDMQVIGG-NVLFGYQPRATLLNFIYQIEMIKF 401 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~--------~G~-~~~~l~~i~~i~~~~~~vpvi~g-~v~s~~~a~~l~~~Gvd~i~v~~~ 401 (590)
.+.+..+.++|++.+++... .|. .....+.++.+++.+ ++|++++ ...+.+.++.+.++|+|+|+....
T Consensus 31 ~~~a~~~~~~Ga~~i~~~e~v~~~~~~~~G~~~~~~~~~i~~i~~~~-~~Pvi~~~~~~~~~~~~~~~~aGad~v~~~~~ 109 (297)
T 2zbt_A 31 PEQAVIAEEAGAVAVMALERVPADIRAQGGVARMSDPKIIKEIMAAV-SIPVMAKVRIGHFVEAMILEAIGVDFIDESEV 109 (297)
T ss_dssp HHHHHHHHHHTCSEEEECSSCHHHHHHTTCCCCCCCHHHHHHHHTTC-SSCEEEEEETTCHHHHHHHHHTTCSEEEEETT
T ss_pred HHHHHHHHHCCCcEEEeccccchHHHhhcCCccCCCHHHHHHHHHhc-CCCeEEEeccCCHHHHHHHHHCCCCEEeeeCC
Confidence 57888889999999987311 110 111256778888777 7898764 455789999999999999943211
Q ss_pred ccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEE
Q psy1056 402 IKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMM 458 (590)
Q Consensus 402 ~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~ 458 (590)
.+.. . .. ..+.+. ..++++++ ++.++.++.++..+|||.+.+
T Consensus 110 ~~~~-------~-~~---~~~~~~--~~~i~l~~--~v~~~~~~~~a~~~Gad~I~v 151 (297)
T 2zbt_A 110 LTPA-------D-EE---HHIDKW--KFKVPFVC--GARNLGEALRRIAEGAAMIRT 151 (297)
T ss_dssp SCCS-------C-SS---CCCCGG--GCSSCEEE--EESSHHHHHHHHHTTCSEEEE
T ss_pred CChH-------H-HH---HHHHHh--CCCceEEe--ecCCHHHHHHHHHcCCCEEEE
Confidence 1100 0 00 001110 12578887 588999999999999999844
|
| >3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=94.02 E-value=0.43 Score=45.93 Aligned_cols=124 Identities=11% Similarity=0.063 Sum_probs=74.1
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEE--ecc----cc---CcHHHHHHHHCCCCEEEEcc
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVI--GGN----VL---FGYQPRATLLNFIYQIEMIK 400 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi--~g~----v~---s~~~a~~l~~~Gvd~i~v~~ 400 (590)
+..+..+...+.++..++|+.. ++...-+.++.. ++.+. ++. .. -..+++++++.|||.||+-+
T Consensus 44 ~i~~lc~eA~~~~~~aVcV~p~-----~v~~a~~~L~~s--~v~v~tVigFP~G~~~~~~Kv~Ea~~Ai~~GAdEIDmVi 116 (239)
T 3ngj_A 44 QIRKLCSEAAEYKFASVCVNPT-----WVPLCAELLKGT--GVKVCTVIGFPLGATPSEVKAYETKVAVEQGAEEVDMVI 116 (239)
T ss_dssp HHHHHHHHHHHHTCSEEEECGG-----GHHHHHHHHTTS--SCEEEEEESTTTCCSCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred HHHHHHHHHHhcCCcEEEECHH-----HHHHHHHHhCCC--CCeEEEEeccCCCCCchHHHHHHHHHHHHcCCCEEEEEe
Confidence 4445667777889999998442 222222223221 34332 221 11 24577889999999999843
Q ss_pred cccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHH----HHcCCCEEEECccc
Q psy1056 401 FIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKA----LALGASTAMMGSLL 462 (590)
Q Consensus 401 ~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~ka----lalGA~~v~~g~~l 462 (590)
..+.-++ .+|.....-+..+.+.|...-+++|..-|..+..++.+| ..+|||+|=-.+-|
T Consensus 117 Nig~lk~--g~~~~v~~eI~~v~~a~~~~~lKVIlEt~~Lt~eei~~a~~ia~~aGADfVKTSTGf 180 (239)
T 3ngj_A 117 NIGMVKA--KKYDDVEKDVKAVVDASGKALTKVIIECCYLTNEEKVEVCKRCVAAGAEYVKTSTGF 180 (239)
T ss_dssp CHHHHHT--TCHHHHHHHHHHHHHHHTTSEEEEECCGGGSCHHHHHHHHHHHHHHTCSEEECCCSS
T ss_pred ehHHhcc--ccHHHHHHHHHHHHHHhcCCceEEEEecCCCCHHHHHHHHHHHHHHCcCEEECCCCC
Confidence 3322100 112223334555666665434788998889999999998 88999999554433
|
| >1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1 | Back alignment and structure |
|---|
Probab=93.66 E-value=0.16 Score=49.20 Aligned_cols=90 Identities=14% Similarity=0.042 Sum_probs=64.6
Q ss_pred CCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCCCCCCcccCCceEEeEeeccchhHHHHHHHHHHcCCcEE
Q psy1056 267 ISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVV 346 (590)
Q Consensus 267 ~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~gad~i 346 (590)
....++.+.+.+.++..+|++.++ ...++.+.+.|++++
T Consensus 122 ~~tv~aa~~L~~~Gf~Vlpy~~dd-----------------------------------------~~~akrl~~~G~~aV 160 (265)
T 1wv2_A 122 VETLKAAEQLVKDGFDVMVYTSDD-----------------------------------------PIIARQLAEIGCIAV 160 (265)
T ss_dssp HHHHHHHHHHHTTTCEEEEEECSC-----------------------------------------HHHHHHHHHSCCSEE
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCC-----------------------------------------HHHHHHHHHhCCCEE
Confidence 334567788888888888866421 355677888999988
Q ss_pred EEecC-CCchhh--HHHHHHHHHHhCCCceEEe-ccccCcHHHHHHHHCCCCEEEE
Q psy1056 347 ILDSS-QGNSIY--QIEMIKFIKKEYPDMQVIG-GNVLFGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 347 ~V~~~-~G~~~~--~l~~i~~i~~~~~~vpvi~-g~v~s~~~a~~l~~~Gvd~i~v 398 (590)
.-... -|...+ -.+.++.+++.. ++|||+ |+|.++++|.++.++|+|++-|
T Consensus 161 mPlg~pIGsG~Gi~~~~lI~~I~e~~-~vPVI~eGGI~TPsDAa~AmeLGAdgVlV 215 (265)
T 1wv2_A 161 MPLAGLIGSGLGICNPYNLRIILEEA-KVPVLVDAGVGTASDAAIAMELGCEAVLM 215 (265)
T ss_dssp EECSSSTTCCCCCSCHHHHHHHHHHC-SSCBEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred EeCCccCCCCCCcCCHHHHHHHHhcC-CCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 55332 122211 156778888864 799885 5888999999999999999955
|
| >3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=93.61 E-value=0.9 Score=44.62 Aligned_cols=65 Identities=17% Similarity=0.027 Sum_probs=44.0
Q ss_pred HHHHHHHHcCCcEEEEecC---CCch----hhHHHHHHHHHHhCCCceEEecccc-CcHHHHHHHHCCCCEEEE
Q psy1056 333 NRLKLLSQAGVDVVILDSS---QGNS----IYQIEMIKFIKKEYPDMQVIGGNVL-FGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 333 e~~~~li~~gad~i~V~~~---~G~~----~~~l~~i~~i~~~~~~vpvi~g~v~-s~~~a~~l~~~Gvd~i~v 398 (590)
++++.+.+..-.++.+-+. .|.+ ..+.+.++.+++.. +.|+++|... ++++++++..+|+|++.|
T Consensus 162 eri~~i~~~~~gfvY~vS~~GvTG~~~~~~~~~~~~v~~vr~~~-~~pv~vGfGI~~~e~~~~~~~~gADgvVV 234 (267)
T 3vnd_A 162 DTLKMVSEQGEGYTYLLSRAGVTGTESKAGEPIENILTQLAEFN-APPPLLGFGIAEPEQVRAAIKAGAAGAIS 234 (267)
T ss_dssp HHHHHHHHHCCSCEEESCCCCCC--------CHHHHHHHHHTTT-CCCEEECSSCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHhCCCcEEEEecCCCCCCccCCcHHHHHHHHHHHHhc-CCCEEEECCcCCHHHHHHHHHcCCCEEEE
Confidence 5666666665555544222 2222 23567888888876 7899987666 799999899999999966
|
| >4eiv_A Deoxyribose-phosphate aldolase; chemotherapy, brain cysts, bradyzoite, structural genomics, for structural genomics of infectious diseases; 1.37A {Toxoplasma gondii} PDB: 3qyq_A* | Back alignment and structure |
|---|
Probab=93.39 E-value=0.86 Score=44.96 Aligned_cols=114 Identities=11% Similarity=-0.062 Sum_probs=70.6
Q ss_pred HHHHHHHcCCcEEEEecCC--------CchhhHHHHHHHHHHhCCC--ceEEecccc--CcH----HHHHHHHCCCCEEE
Q psy1056 334 RLKLLSQAGVDVVILDSSQ--------GNSIYQIEMIKFIKKEYPD--MQVIGGNVL--FGY----QPRATLLNFIYQIE 397 (590)
Q Consensus 334 ~~~~li~~gad~i~V~~~~--------G~~~~~l~~i~~i~~~~~~--vpvi~g~v~--s~~----~a~~l~~~Gvd~i~ 397 (590)
.++..++.|++-|-+...- |+...+.+.|+.+++...+ +.||+-... +.+ ..+.++++|+|+|+
T Consensus 105 Ea~~Av~~GAdEIDmVinig~lk~~~~g~~~~V~~eI~~v~~a~~~~~lKVIlEt~~Lt~~e~i~~A~~ia~~AGADFVK 184 (297)
T 4eiv_A 105 EAVGALKDGADEIECLIDWRRMNENVADGESRIRLLVSEVKKVVGPKTLKVVLSGGELQGGDIISRAAVAALEGGADFLQ 184 (297)
T ss_dssp HHHHHHHTTCSEEEEECCTHHHHHCHHHHHHHHHHHHHHHHHHHTTSEEEEECCSSCCCCHHHHHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHcCCCEEEeeeeHHHHhcccCCcHHHHHHHHHHHHHHhcCCceEEEEecccCCcHHHHHHHHHHHHHhCCCEEE
Confidence 5667788899977554432 4445566777777766432 455542222 333 23456679999993
Q ss_pred EcccccccCCCccccccchhHHHHHHHHHh---------------------cCCCcEEec-CCCCCHHHHHHHHHcCCC
Q psy1056 398 MIKFIKKEYPDMQVIGRNGTAVYRVAEYAS---------------------RRGVPVIAD-GGVQSVGHVMKALALGAS 454 (590)
Q Consensus 398 v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~---------------------~~~v~iia~-GGi~~~~di~kalalGA~ 454 (590)
-| - ||...|.|+..+...++..+ ..++.|=|+ |||||..|+.+-+.+...
T Consensus 185 TS----T---Gf~~~gAT~edV~lM~~~v~~~~~~~~~~~~~~~~~~~~~tg~~vgvKAs~GGIrt~e~A~~~i~~~~e 256 (297)
T 4eiv_A 185 TS----S---GLGATHATMFTVHLISIALREYMVRENERIRVEGINREGAAVRCIGIKIEVGDVHMAETADFLMQMIFE 256 (297)
T ss_dssp CC----C---SSSSCCCCHHHHHHHHHHHHHHHCC------------------CCEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred cC----C---CCCCCCCCHHHHHHHHHHHHHHhccccccccccccccccccCCceeEEecCCCCCCHHHHHHHHHHHHH
Confidence 21 1 13333446666665555542 235889999 999999999999986544
|
| >1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1 | Back alignment and structure |
|---|
Probab=93.38 E-value=0.79 Score=42.96 Aligned_cols=109 Identities=16% Similarity=0.130 Sum_probs=69.6
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHH---HhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccC
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIK---KEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEY 406 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~---~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~ 406 (590)
+..+.++.+.+.|++.+++...........+.++.++ ..+ ++++++. +.++.+.++|+|+|-+. ....
T Consensus 27 ~~~~~~~~~~~~G~~~i~l~~~~~~~~~~~~~~~~l~~~~~~~-~v~v~v~-----~~~~~a~~~gad~v~l~--~~~~- 97 (215)
T 1xi3_A 27 PEVESVREALEGGATAIQMRIKNAPTREMYEIGKTLRQLTREY-DALFFVD-----DRVDVALAVDADGVQLG--PEDM- 97 (215)
T ss_dssp CHHHHHHHHHHTTCSEEEECCCSCCHHHHHHHHHHHHHHHHHT-TCEEEEE-----SCHHHHHHHTCSEEEEC--TTSC-
T ss_pred hHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHc-CCeEEEc-----ChHHHHHHcCCCEEEEC--CccC-
Confidence 4567788899999999998765544444444444444 344 6777773 56678889999999221 0000
Q ss_pred CCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 407 PDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 407 ~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
. ...+++.. .++.+.. .+.|+.++.++...|||++.+++.+
T Consensus 98 --------~---~~~~~~~~--~~~~~~v--~~~t~~e~~~~~~~g~d~i~~~~~~ 138 (215)
T 1xi3_A 98 --------P---IEVAKEIA--PNLIIGA--SVYSLEEALEAEKKGADYLGAGSVF 138 (215)
T ss_dssp --------C---HHHHHHHC--TTSEEEE--EESSHHHHHHHHHHTCSEEEEECSS
T ss_pred --------C---HHHHHHhC--CCCEEEE--ecCCHHHHHHHHhcCCCEEEEcCCc
Confidence 1 12333332 2332222 3679999999999999999887655
|
| >3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=93.29 E-value=0.42 Score=46.33 Aligned_cols=111 Identities=11% Similarity=0.031 Sum_probs=71.8
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCc---------hhhH---HHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEE
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGN---------SIYQ---IEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIE 397 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~---------~~~~---l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~ 397 (590)
+..+.++.+++.|++.+.+-..+.. .... ...+..+.+.+ ++++++-+ ..+.+.++|+|+|
T Consensus 44 ~~~~~~~~al~~Gv~~vqlR~K~~~~~~~~~~l~~~~~~~~a~~l~~l~~~~-~~~liInd-----~~~lA~~~gAdGV- 116 (243)
T 3o63_A 44 DLAQFAEAALAGGVDIIQLRDKGSPGELRFGPLQARDELAACEILADAAHRY-GALFAVND-----RADIARAAGADVL- 116 (243)
T ss_dssp CHHHHHHHHHHTTCSEEEECCTTCHHHHHHCSCCHHHHHHHHHHHHHHHHHT-TCEEEEES-----CHHHHHHHTCSEE-
T ss_pred hHHHHHHHHHHCCCCEEEEccCCCCccccccCCCHHHHHHHHHHHHHHHHhh-CCEEEEeC-----HHHHHHHhCCCEE-
Confidence 4678888899999999998655421 2223 34455566666 78888742 3344667899998
Q ss_pred EcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 398 MIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 398 v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
+.+.. .. ...++++... .+..+-+ -+.|..++.+|...|||++.+|+.|.
T Consensus 117 ---HLg~~---------dl-~~~~~r~~~~-~~~~iG~--S~ht~~Ea~~A~~~GaDyI~vgpvf~ 166 (243)
T 3o63_A 117 ---HLGQR---------DL-PVNVARQILA-PDTLIGR--STHDPDQVAAAAAGDADYFCVGPCWP 166 (243)
T ss_dssp ---EECTT---------SS-CHHHHHHHSC-TTCEEEE--EECSHHHHHHHHHSSCSEEEECCSSC
T ss_pred ---EecCC---------cC-CHHHHHHhhC-CCCEEEE--eCCCHHHHHHHhhCCCCEEEEcCccC
Confidence 33322 00 1223444322 1232333 47899999999999999999999874
|
| >1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=93.26 E-value=0.16 Score=48.81 Aligned_cols=123 Identities=11% Similarity=-0.063 Sum_probs=79.0
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCch----hhHHHHHHHHHHhCCCceEEecccc-C-cHHHHHHHHCCCCEEEEccc-
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQGNS----IYQIEMIKFIKKEYPDMQVIGGNVL-F-GYQPRATLLNFIYQIEMIKF- 401 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G~~----~~~l~~i~~i~~~~~~vpvi~g~v~-s-~~~a~~l~~~Gvd~i~v~~~- 401 (590)
....+.++.+.+.|++.++++...|+. ..-.+.++.+++.. +.|+.+.=.. + ..-.+.+.++|+|++.+-.+
T Consensus 17 ~~l~~~i~~~~~~Gad~ihldi~DG~fvp~~~~g~~~v~~lr~~~-~~~~~vhlmv~dp~~~i~~~~~aGadgv~vh~e~ 95 (230)
T 1tqj_A 17 SRLGEEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIVDAIRPLT-KKTLDVHLMIVEPEKYVEDFAKAGADIISVHVEH 95 (230)
T ss_dssp GGHHHHHHHHHHTTCSEEEEEEEBSSSSSCBCBCHHHHHHHGGGC-CSEEEEEEESSSGGGTHHHHHHHTCSEEEEECST
T ss_pred hHHHHHHHHHHHcCCCEEEEEEEecCCCcchhhhHHHHHHHHhhc-CCcEEEEEEccCHHHHHHHHHHcCCCEEEECccc
Confidence 456678888899999999998765542 12247788888765 3444321111 2 23468888999999955333
Q ss_pred -ccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCC
Q psy1056 402 -IKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGT 465 (590)
Q Consensus 402 -~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~ 465 (590)
.+.. ..++.+.+.+.++.+..+=.-.|+.+..+++.-|+|.|.+++.+.++
T Consensus 96 ~~~~~-------------~~~~~~~i~~~g~~~gv~~~p~t~~e~~~~~~~~~D~v~~msv~pg~ 147 (230)
T 1tqj_A 96 NASPH-------------LHRTLCQIRELGKKAGAVLNPSTPLDFLEYVLPVCDLILIMSVNPGF 147 (230)
T ss_dssp TTCTT-------------HHHHHHHHHHTTCEEEEEECTTCCGGGGTTTGGGCSEEEEESSCC--
T ss_pred ccchh-------------HHHHHHHHHHcCCcEEEEEeCCCcHHHHHHHHhcCCEEEEEEecccc
Confidence 2211 22334444455665555445578888899999999999998887543
|
| >2nql_A AGR_PAT_674P, isomerase/lactonizing enzyme; enolase, structural genomics, protein structure initiative, nysgxrc; 1.80A {Agrobacterium tumefaciens str} PDB: 4dn1_A | Back alignment and structure |
|---|
Probab=93.19 E-value=0.46 Score=49.41 Aligned_cols=116 Identities=6% Similarity=-0.023 Sum_probs=79.5
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhC-CCceEEecc--ccCcHHH----HHHHHCCCCEEEEccc
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEY-PDMQVIGGN--VLFGYQP----RATLLNFIYQIEMIKF 401 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~-~~vpvi~g~--v~s~~~a----~~l~~~Gvd~i~v~~~ 401 (590)
+...+.+..+.+.|.+.+-++....+... ++.++.+++.+ +++++.+.- .-+.+++ +.|.+.|+++| +
T Consensus 166 e~~~~~a~~~~~~Gf~~vKik~g~~~~~~-~e~v~avr~a~g~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~i----E 240 (388)
T 2nql_A 166 KARGELAKYWQDRGFNAFKFATPVADDGP-AAEIANLRQVLGPQAKIAADMHWNQTPERALELIAEMQPFDPWFA----E 240 (388)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEGGGCTTCH-HHHHHHHHHHHCTTSEEEEECCSCSCHHHHHHHHHHHGGGCCSCE----E
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCChHH-HHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHhhcCCCEE----E
Confidence 34456777788999999998865434566 88999999876 578888642 1255555 44555788887 2
Q ss_pred ccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcC-CCEEEEC
Q psy1056 402 IKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALG-ASTAMMG 459 (590)
Q Consensus 402 ~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalG-A~~v~~g 459 (590)
- . + . ...+...++..+..++||++++.+.++.++.+++..| +|+|++-
T Consensus 241 q--P---~---~--~~d~~~~~~l~~~~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik 289 (388)
T 2nql_A 241 A--P---V---W--TEDIAGLEKVSKNTDVPIAVGEEWRTHWDMRARIERCRIAIVQPE 289 (388)
T ss_dssp C--C---S---C--TTCHHHHHHHHTSCCSCEEECTTCCSHHHHHHHHTTSCCSEECCC
T ss_pred C--C---C---C--hhhHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHcCCCCEEEec
Confidence 1 1 1 1 1112233444445579999999999999999999887 7888654
|
| >4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A | Back alignment and structure |
|---|
Probab=93.15 E-value=0.21 Score=51.60 Aligned_cols=72 Identities=42% Similarity=0.726 Sum_probs=60.5
Q ss_pred cchHHHHHHHHHcCCcEEEEcCCCCchHHHHHHHHHhhhcCCCcccccccccchHHHHHHHHHhcccccccc
Q psy1056 136 EADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGLRVGS 207 (590)
Q Consensus 136 ~d~~~~~~~l~~~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~im~~~~~~~~~~~~a~~~m~~~~~v~~ 207 (590)
++..+++..++++++|+|.+++++++.....+.++++++.+|...++-.++.+.+..+.+.+..+|+++||+
T Consensus 107 ~~~~~~~~~lieaGvd~I~idta~G~~~~~~~~I~~ik~~~p~v~Vi~G~v~t~e~A~~a~~aGAD~I~vG~ 178 (366)
T 4fo4_A 107 PGNEERVKALVEAGVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEAGVSAVKVGI 178 (366)
T ss_dssp TTCHHHHHHHHHTTCSEEEEECSCTTSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHHTCSEEEECS
T ss_pred hhHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHhcCCCceEeeeeCCHHHHHHHHHcCCCEEEEec
Confidence 456788999999999999999999998888999999998776665666777777778888899988887763
|
| >1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A | Back alignment and structure |
|---|
Probab=93.13 E-value=0.12 Score=56.66 Aligned_cols=76 Identities=11% Similarity=0.048 Sum_probs=50.7
Q ss_pred cHHHHHHHHCCCCEEEE-cccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHH-----------HHHHH
Q psy1056 382 GYQPRATLLNFIYQIEM-IKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGH-----------VMKAL 449 (590)
Q Consensus 382 ~~~a~~l~~~Gvd~i~v-~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~d-----------i~kal 449 (590)
.+-|+.+.+.|+|.+-+ .+...+. +-......+..+.+.++...+||+..|||++..| +.+.+
T Consensus 283 ~~~A~~~~~~Ga~~l~~~dl~~~~~-----~~~~~~~~~~~i~~i~~~~~ipi~vgGGIr~~~d~~~~~~~~~~~a~~~l 357 (555)
T 1jvn_A 283 VQLAQKYYQQGADEVTFLNITSFRD-----CPLKDTPMLEVLKQAAKTVFVPLTVGGGIKDIVDVDGTKIPALEVASLYF 357 (555)
T ss_dssp HHHHHHHHHTTCSEEEEEEEC---C-----CCGGGCHHHHHHHHHTTTCCSCEEEESSCSCEECTTCCEECHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEEeCCcccc-----ccCCCchHHHHHHHHHhhCCCcEEEeCccccchhcccccchHHHHHHHHH
Confidence 35678888899999855 2221111 0000112233445555556799999999999844 99999
Q ss_pred HcCCCEEEECccc
Q psy1056 450 ALGASTAMMGSLL 462 (590)
Q Consensus 450 alGA~~v~~g~~l 462 (590)
.+|||.|.+|+..
T Consensus 358 ~aGad~V~igt~~ 370 (555)
T 1jvn_A 358 RSGADKVSIGTDA 370 (555)
T ss_dssp HHTCSEEEECHHH
T ss_pred HcCCCEEEECCHH
Confidence 9999999999765
|
| >1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A* | Back alignment and structure |
|---|
Probab=93.11 E-value=5.8 Score=40.36 Aligned_cols=171 Identities=16% Similarity=0.110 Sum_probs=104.4
Q ss_pred HHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccc-----cc-----------CCCCCCccc---------------CC
Q psy1056 269 LEEANVILEKSKKGKLPILNDKGELIALIARTDLKK-----SR-----------DYPDSSKDE---------------NN 317 (590)
Q Consensus 269 l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~-----~~-----------~~~~~~~d~---------------~~ 317 (590)
+.++.+.+.+.++..-++...+..++|+|-.+..+. .. .|+...++. .+
T Consensus 26 ~~~~~~~~~~~g~~~~~~~g~~~~~ig~~g~~~~~~~~~~~~~~~v~~~~~i~~~~k~~sr~~~~~~~~i~i~~~~iG~~ 105 (350)
T 1vr6_A 26 IRKVVKLAESYNLKCHISKGQERTVIGIIGDDRYVVADKFESLDCVESVVRVLKPYKLVSREFHPEDTVIDLGDVKIGNG 105 (350)
T ss_dssp HHHHHHHHHHTTEEEEEEECSSCEEEEEEEEESSCCHHHHHTSTTEEEEEECSCSCCTTBTTTCCSCCCEECSSCEESTT
T ss_pred HHHHHHHHHhCCCeEEEEecCceEEEEEECCcCcCCHHHhhCCccceeeccCCCChhhhhhhcCCcCCEEEECCEEECCC
Confidence 445555667777776677777778888876543221 11 122221110 01
Q ss_pred ceEEeEeec---cchhHHHHHHHHHHcCCcEEEEecC---------CCchhhHHHHHHHHHHhCCCceEEeccccCcHHH
Q psy1056 318 QLIVGAAIG---TREADKNRLKLLSQAGVDVVILDSS---------QGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQP 385 (590)
Q Consensus 318 ~l~v~a~i~---~~~~~~e~~~~li~~gad~i~V~~~---------~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a 385 (590)
++++.+... ..+...+.++.+.++|++++-.... +|.....+..+..+++++ ++|++. ++.+.+.+
T Consensus 106 ~~~vIAgpcs~es~e~a~~~a~~~k~aGa~~vr~q~fKprTs~~~f~glg~egl~~l~~~~~e~-Gl~~~t-e~~d~~~~ 183 (350)
T 1vr6_A 106 YFTIIAGPCSVEGREMLMETAHFLSELGVKVLRGGAYKPRTSPYSFQGLGEKGLEYLREAADKY-GMYVVT-EALGEDDL 183 (350)
T ss_dssp EEEEEEECSBCCCHHHHHHHHHHHHHTTCCEEECBSCCCCCSTTSCCCCTHHHHHHHHHHHHHH-TCEEEE-ECSSGGGH
T ss_pred CeEEEEeCCCcCCHHHHHHHHHHHHHcCCCeeeeeEEeCCCChHhhcCCCHHHHHHHHHHHHHc-CCcEEE-EeCCHHHH
Confidence 233333222 2234556788889999998765431 222233456666667666 788876 99999999
Q ss_pred HHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCC-CHHHHHHHHH----cCCCEE
Q psy1056 386 RATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQ-SVGHVMKALA----LGASTA 456 (590)
Q Consensus 386 ~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~-~~~di~kala----lGA~~v 456 (590)
..+.+. +|++.+.-.+.+. ...+++.+ +.+.||+.+=|.. |..|+..|.. .|..-+
T Consensus 184 ~~l~~~-vd~lkIgAr~~~n-------------~~LL~~va-~~~kPVilk~G~~~tl~ei~~Ave~i~~~GN~~v 244 (350)
T 1vr6_A 184 PKVAEY-ADIIQIGARNAQN-------------FRLLSKAG-SYNKPVLLKRGFMNTIEEFLLSAEYIANSGNTKI 244 (350)
T ss_dssp HHHHHH-CSEEEECGGGTTC-------------HHHHHHHH-TTCSCEEEECCTTCCHHHHHHHHHHHHHTTCCCE
T ss_pred HHHHHh-CCEEEECcccccC-------------HHHHHHHH-ccCCcEEEcCCCCCCHHHHHHHHHHHHHCCCCeE
Confidence 999998 9999773222222 12233333 5689999999997 9999887664 476444
|
| >2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens} | Back alignment and structure |
|---|
Probab=93.09 E-value=1.5 Score=45.31 Aligned_cols=116 Identities=9% Similarity=-0.038 Sum_probs=80.6
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhC-CCceEEecc--ccCcHHHHHH----HHCCCCEEEEccc
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEY-PDMQVIGGN--VLFGYQPRAT----LLNFIYQIEMIKF 401 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~-~~vpvi~g~--v~s~~~a~~l----~~~Gvd~i~v~~~ 401 (590)
+...+.+..+.+.|.+.+-++..+ +....++.++.+++.+ ++.++.+.- .-+.+++.++ .+.|+ +| +
T Consensus 147 ~~~~~~a~~~~~~Gf~~iKik~g~-~~~~~~e~v~avr~a~g~d~~l~vDan~~~~~~~a~~~~~~l~~~~i-~i----E 220 (379)
T 2rdx_A 147 AETRAELARHRAAGYRQFQIKVGA-DWQSDIDRIRACLPLLEPGEKAMADANQGWRVDNAIRLARATRDLDY-IL----E 220 (379)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCS-CHHHHHHHHHHHGGGSCTTCEEEEECTTCSCHHHHHHHHHHTTTSCC-EE----E
T ss_pred HHHHHHHHHHHHcCCCEEEEeccC-CHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhCCe-EE----e
Confidence 345667788889999999987654 3455678899999888 478888642 2266666443 44677 76 2
Q ss_pred ccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcC-CCEEEECccc
Q psy1056 402 IKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALG-ASTAMMGSLL 462 (590)
Q Consensus 402 ~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalG-A~~v~~g~~l 462 (590)
.. +. .+...++..+..++||++++.+.++.++.+++..| +|.|++....
T Consensus 221 --~P---~~-------~~~~~~~l~~~~~iPI~~de~i~~~~~~~~~i~~~~~d~v~ik~~~ 270 (379)
T 2rdx_A 221 --QP---CR-------SYEECQQVRRVADQPMKLDECVTGLHMAQRIVADRGAEICCLKISN 270 (379)
T ss_dssp --CC---SS-------SHHHHHHHHTTCCSCEEECTTCCSHHHHHHHHHHTCCSEEEEETTT
T ss_pred --CC---cC-------CHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHcCCCCEEEEeccc
Confidence 11 11 12233444445579999999999999999999987 7899886544
|
| >1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ... | Back alignment and structure |
|---|
Probab=93.01 E-value=1.2 Score=43.77 Aligned_cols=40 Identities=13% Similarity=-0.088 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhCCCceEEecccc-CcHHHHHHHHCCCCEEEE
Q psy1056 358 QIEMIKFIKKEYPDMQVIGGNVL-FGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 358 ~l~~i~~i~~~~~~vpvi~g~v~-s~~~a~~l~~~Gvd~i~v 398 (590)
..+.++.+++.. +.|+.++... +++++.+++.+|||++.|
T Consensus 193 ~~~~i~~lr~~~-~~pi~vggGI~t~e~~~~~~~agAD~vVV 233 (268)
T 1qop_A 193 LHHLIEKLKEYH-AAPALQGFGISSPEQVSAAVRAGAAGAIS 233 (268)
T ss_dssp CHHHHHHHHHTT-CCCEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHhcc-CCcEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 367888888876 7899887666 599999999999999966
|
| >2oz8_A MLL7089 protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.48A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=92.98 E-value=1.5 Score=45.55 Aligned_cols=115 Identities=6% Similarity=-0.078 Sum_probs=79.1
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhC-CCceEEeccc--cCcHHH----HHHHH--CCCCEEEEcc
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEY-PDMQVIGGNV--LFGYQP----RATLL--NFIYQIEMIK 400 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~-~~vpvi~g~v--~s~~~a----~~l~~--~Gvd~i~v~~ 400 (590)
...+.+..+.+.|.+.+-+....++....++.++.+++.+ +++++.+.-- -+.++| +.|.+ .|+++|
T Consensus 148 ~~~~~a~~~~~~Gf~~vKik~g~~~~~~~~e~v~avR~a~G~~~~l~vDan~~~~~~~a~~~~~~l~~~g~~i~~i---- 223 (389)
T 2oz8_A 148 AFVSLFSHAASIGYSAFKIKVGHRDFDRDLRRLELLKTCVPAGSKVMIDPNEAWTSKEALTKLVAIREAGHDLLWV---- 223 (389)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCCSSHHHHHHHHHHHHTTSCTTCEEEEECTTCBCHHHHHHHHHHHHHTTCCCSEE----
T ss_pred HHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCceEE----
Confidence 3456677788899999998876655566688999999987 5788876321 255555 45666 677766
Q ss_pred cccccCCCccccccchhHHHHHHHHHhcC-CCcEEecCCCCCHHHHHHHHHcC-CCEEEEC
Q psy1056 401 FIKKEYPDMQVIGRNGTAVYRVAEYASRR-GVPVIADGGVQSVGHVMKALALG-ASTAMMG 459 (590)
Q Consensus 401 ~~~~~~~~~~~~g~~~~~l~~~~~~~~~~-~v~iia~GGi~~~~di~kalalG-A~~v~~g 459 (590)
+-- +... ....+ ++..+.. ++||++++.+ +..++.+++..| +|.|++.
T Consensus 224 EqP-----~~~~--~~~~~---~~l~~~~~~iPIa~dE~~-~~~~~~~~i~~~~~d~v~ik 273 (389)
T 2oz8_A 224 EDP-----ILRH--DHDGL---RTLRHAVTWTQINSGEYL-DLQGKRLLLEAHAADILNVH 273 (389)
T ss_dssp ESC-----BCTT--CHHHH---HHHHHHCCSSEEEECTTC-CHHHHHHHHHTTCCSEEEEC
T ss_pred eCC-----CCCc--CHHHH---HHHHhhCCCCCEEeCCCC-CHHHHHHHHHcCCCCEEEEC
Confidence 211 1000 22223 3333345 6999999999 999999999998 7889885
|
| >1tzz_A Hypothetical protein L1841; structural genomics, mandelate racemase like fold, nysgxrc target T1523, PSI, protein structure initiative; 1.86A {Bradyrhizobium japonicum} SCOP: c.1.11.2 d.54.1.1 PDB: 2dw7_A* 2dw6_A* | Back alignment and structure |
|---|
Probab=92.93 E-value=1.3 Score=45.87 Aligned_cols=119 Identities=12% Similarity=-0.062 Sum_probs=82.4
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhC-CCceEEecc--ccCcHHHH----HHHHCCCCEEEEcccc
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEY-PDMQVIGGN--VLFGYQPR----ATLLNFIYQIEMIKFI 402 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~-~~vpvi~g~--v~s~~~a~----~l~~~Gvd~i~v~~~~ 402 (590)
...+.+..+.+.|.+.+-+....++....++.++.+++.+ +++++.+.- .-+.++|. .|.+.|+++| +-
T Consensus 168 ~~~~~a~~~~~~Gf~~iKik~g~~~~~~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~i----Eq 243 (392)
T 1tzz_A 168 MLRGEMRGYLDRGYNVVKMKIGGAPIEEDRMRIEAVLEEIGKDAQLAVDANGRFNLETGIAYAKMLRDYPLFWY----EE 243 (392)
T ss_dssp HHHHHHHHHHTTTCSEEEEECSSSCHHHHHHHHHHHHHHHTTTCEEEEECTTCCCHHHHHHHHHHHTTSCCSEE----EC
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHcCCCee----cC
Confidence 3456677788899999998877655566688899999876 578887632 22566654 4445788887 21
Q ss_pred cccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcC-----CCEEEECccc
Q psy1056 403 KKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALG-----ASTAMMGSLL 462 (590)
Q Consensus 403 ~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalG-----A~~v~~g~~l 462 (590)
- + ....+...++..+..++||++++.+.+..++.+++..| +|.+++-...
T Consensus 244 P-----~-----~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~~~~~d~v~ik~~~ 298 (392)
T 1tzz_A 244 V-----G-----DPLDYALQAALAEFYPGPMATGENLFSHQDARNLLRYGGMRPDRDWLQFDCAL 298 (392)
T ss_dssp C-----S-----CTTCHHHHHHHTTTCCSCEEECTTCCSHHHHHHHHHHSCCCTTTCEECCCTTT
T ss_pred C-----C-----ChhhHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHcCCCccCCcEEEECccc
Confidence 1 1 11112233444444579999999999999999999998 8999775443
|
| >1nu5_A Chloromuconate cycloisomerase; enzyme, dehalogenation; 1.95A {Pseudomonas SP} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=92.87 E-value=1 Score=46.26 Aligned_cols=118 Identities=12% Similarity=0.007 Sum_probs=81.0
Q ss_pred hhHHHHHHHHHH-cCCcEEEEecCCCchhhHHHHHHHHHHhCC-CceEEecc-c-cCcHHH----HHHHHCCCCEEEEcc
Q psy1056 329 EADKNRLKLLSQ-AGVDVVILDSSQGNSIYQIEMIKFIKKEYP-DMQVIGGN-V-LFGYQP----RATLLNFIYQIEMIK 400 (590)
Q Consensus 329 ~~~~e~~~~li~-~gad~i~V~~~~G~~~~~l~~i~~i~~~~~-~vpvi~g~-v-~s~~~a----~~l~~~Gvd~i~v~~ 400 (590)
+...+.+..+++ .|.+.+-++...++....++.++.+++.++ ++++.+.- . -+.+++ +.|.+.|+++|
T Consensus 144 e~~~~~a~~~~~~~Gf~~iKik~g~~~~~~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~i---- 219 (370)
T 1nu5_A 144 ARDIDSALEMIETRRHNRFKVKLGARTPAQDLEHIRSIVKAVGDRASVRVDVNQGWDEQTASIWIPRLEEAGVELV---- 219 (370)
T ss_dssp HHHHHHHHHHHHTTSCSEEEEECSSSCHHHHHHHHHHHHHHHGGGCEEEEECTTCCCHHHHHHHHHHHHHHTCCEE----
T ss_pred HHHHHHHHHHHHhCCccEEEEecCCCChHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCcceE----
Confidence 345567777888 999999988776555566788999998764 67777642 1 255555 44666899988
Q ss_pred cccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcC-CCEEEECc
Q psy1056 401 FIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALG-ASTAMMGS 460 (590)
Q Consensus 401 ~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalG-A~~v~~g~ 460 (590)
+-- +... ....+..++ +..++||++++.+.+..++.+++..| +|.|++-.
T Consensus 220 EqP-----~~~~--~~~~~~~l~---~~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~ik~ 270 (370)
T 1nu5_A 220 EQP-----VPRA--NFGALRRLT---EQNGVAILADESLSSLSSAFELARDHAVDAFSLKL 270 (370)
T ss_dssp ECC-----SCTT--CHHHHHHHH---HHCSSEEEESTTCCSHHHHHHHHHTTCCSEEEECH
T ss_pred eCC-----CCcc--cHHHHHHHH---HhCCCCEEeCCCCCCHHHHHHHHHhCCCCEEEEch
Confidence 211 1000 222333333 34579999999999999999999987 78887754
|
| >1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A | Back alignment and structure |
|---|
Probab=92.75 E-value=0.58 Score=44.75 Aligned_cols=123 Identities=7% Similarity=-0.034 Sum_probs=77.0
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCch----hhHHHHHHHHHHhCCCceEEecccc--CcHHHHHHHHCCCCEEEEcccc
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQGNS----IYQIEMIKFIKKEYPDMQVIGGNVL--FGYQPRATLLNFIYQIEMIKFI 402 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G~~----~~~l~~i~~i~~~~~~vpvi~g~v~--s~~~a~~l~~~Gvd~i~v~~~~ 402 (590)
....+.++.+.+.|++.++++...|+. ..-.+.++.+++.. +.|+.++=.. ..+.++.+.++|+|++-+-.+.
T Consensus 19 ~~l~~~i~~~~~~Gad~i~l~i~Dg~fv~~~~~~~~~~~~lr~~~-~~~~~v~lmv~d~~~~i~~~~~agad~v~vH~~~ 97 (228)
T 1h1y_A 19 ANLAAEADRMVRLGADWLHMDIMDGHFVPNLTIGAPVIQSLRKHT-KAYLDCHLMVTNPSDYVEPLAKAGASGFTFHIEV 97 (228)
T ss_dssp GGHHHHHHHHHHTTCSEEEEEEEBSSSSSCBCBCHHHHHHHHTTC-CSEEEEEEESSCGGGGHHHHHHHTCSEEEEEGGG
T ss_pred HHHHHHHHHHHHcCCCEEEEEEecCCcCcchhhCHHHHHHHHhhc-CCcEEEEEEecCHHHHHHHHHHcCCCEEEECCCC
Confidence 456678888899999999998654431 12247778888765 3343322111 2335888889999999443222
Q ss_pred cccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHc---CCCEEEECccccC
Q psy1056 403 KKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALAL---GASTAMMGSLLAG 464 (590)
Q Consensus 403 ~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalal---GA~~v~~g~~l~~ 464 (590)
+.. .+.++.+.+++.++.++.+=.-.|+.+..+++.- |+|+|.+++.+.+
T Consensus 98 ~~~------------~~~~~~~~i~~~g~~igv~~~p~t~~e~~~~~~~~~~~~d~vl~~sv~pg 150 (228)
T 1h1y_A 98 SRD------------NWQELIQSIKAKGMRPGVSLRPGTPVEEVFPLVEAENPVELVLVMTVEPG 150 (228)
T ss_dssp CTT------------THHHHHHHHHHTTCEEEEEECTTSCGGGGHHHHHSSSCCSEEEEESSCTT
T ss_pred ccc------------HHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEeecCC
Confidence 211 2123333334456777765455677777778777 9999988877643
|
| >3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=92.62 E-value=0.32 Score=48.14 Aligned_cols=122 Identities=10% Similarity=-0.033 Sum_probs=72.1
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCC--CceEE--ecc----cc---CcHHHHHHHHCCCCEEEE
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYP--DMQVI--GGN----VL---FGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~--~vpvi--~g~----v~---s~~~a~~l~~~Gvd~i~v 398 (590)
+..+.++...+.|+..++|+.. .+...++.+. ++++. ++. .. -..+++.+++.|||.||+
T Consensus 75 dI~~lc~eA~~~g~aaVCV~P~---------~V~~a~~~L~~s~V~V~tVigFP~G~~~~~~Kv~Ea~~Ai~~GAdEIDm 145 (288)
T 3oa3_A 75 QIDVLCAEAKEYGFATVCVRPD---------YVSRAVQYLQGTQVGVTCVIGFHEGTYSTDQKVSEAKRAMQNGASELDM 145 (288)
T ss_dssp HHHHHHHHHHHHTCSEEEECGG---------GHHHHHHHTTTSSCEEEEEESTTTSCSCHHHHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHhcCCcEEEECHH---------HHHHHHHHcCCCCCeEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCEEEE
Confidence 3445667777889999998532 1222233332 34443 221 11 235778899999999997
Q ss_pred cccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHH----HHHcCCCEEEECccc
Q psy1056 399 IKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMK----ALALGASTAMMGSLL 462 (590)
Q Consensus 399 ~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~k----alalGA~~v~~g~~l 462 (590)
-+..+..++ .+|.....-+..+.+.|....+.+|..-|..+..++.+ |..+|||+|=-.+-|
T Consensus 146 VINig~lk~--g~~~~v~~eI~~V~~a~~~~~lKVIlEt~~Lt~eei~~A~~ia~eaGADfVKTSTGf 211 (288)
T 3oa3_A 146 VMNYPWLSE--KRYTDVFQDIRAVRLAAKDAILKVILETSQLTADEIIAGCVLSSLAGADYVKTSTGF 211 (288)
T ss_dssp ECCHHHHHT--TCHHHHHHHHHHHHHHTTTSEEEEECCGGGCCHHHHHHHHHHHHHTTCSEEECCCSS
T ss_pred EeehhhhcC--CcHHHHHHHHHHHHHHhcCCCceEEEECCCCCHHHHHHHHHHHHHcCCCEEEcCCCC
Confidence 433332100 11222333455566666543378899889999999766 556899999444433
|
| >3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A* | Back alignment and structure |
|---|
Probab=92.49 E-value=1.3 Score=45.81 Aligned_cols=110 Identities=15% Similarity=0.214 Sum_probs=76.7
Q ss_pred hHHHHHHHHHHcCCcEEEEecC---------CCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcc
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSS---------QGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIK 400 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~---------~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~ 400 (590)
...+.++.+.++|++++..... +|.....+..+..+++++ ++|++. ++.+.+.+..+.+. +|++.+.-
T Consensus 157 ~a~~~a~~~k~aGa~~vk~q~fkprts~~~f~gl~~egl~~L~~~~~~~-Gl~~~t-e~~d~~~~~~l~~~-vd~lkIgs 233 (385)
T 3nvt_A 157 QVAAVAESIKAKGLKLIRGGAFKPRTSPYDFQGLGLEGLKILKRVSDEY-GLGVIS-EIVTPADIEVALDY-VDVIQIGA 233 (385)
T ss_dssp HHHHHHHHHHHTTCCEEECBSSCCCSSTTSCCCCTHHHHHHHHHHHHHH-TCEEEE-ECCSGGGHHHHTTT-CSEEEECG
T ss_pred HHHHHHHHHHHcCCCeEEcccccCCCChHhhcCCCHHHHHHHHHHHHHc-CCEEEE-ecCCHHHHHHHHhh-CCEEEECc
Confidence 4556788899999999876541 232333356666666666 788876 99999999999888 99997732
Q ss_pred cccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCC-CCHHHHHHHHH----cCCCEE
Q psy1056 401 FIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGV-QSVGHVMKALA----LGASTA 456 (590)
Q Consensus 401 ~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi-~~~~di~kala----lGA~~v 456 (590)
.+.+. . .+.+.+.+.+.||+.+-|. .|..|+..|.. .|..-+
T Consensus 234 ~~~~n-------------~-~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i 280 (385)
T 3nvt_A 234 RNMQN-------------F-ELLKAAGRVDKPILLKRGLSATIEEFIGAAEYIMSQGNGKI 280 (385)
T ss_dssp GGTTC-------------H-HHHHHHHTSSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCE
T ss_pred ccccC-------------H-HHHHHHHccCCcEEEecCCCCCHHHHHHHHHHHHHcCCCeE
Confidence 22222 1 2333444678999999999 99999987754 366544
|
| >2pp0_A L-talarate/galactarate dehydratase; enolase superfamily, LYA; 2.20A {Salmonella typhimurium} PDB: 2pp1_A* 2pp3_A* | Back alignment and structure |
|---|
Probab=92.42 E-value=1.1 Score=46.74 Aligned_cols=116 Identities=8% Similarity=0.001 Sum_probs=79.1
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhC-CCceEEecc--ccCcHHHH----HHHHCCCCEEEEcccc
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEY-PDMQVIGGN--VLFGYQPR----ATLLNFIYQIEMIKFI 402 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~-~~vpvi~g~--v~s~~~a~----~l~~~Gvd~i~v~~~~ 402 (590)
...+.+..+.+.|.+.+-+....+.....++.++.+++.+ +++++.+.- .-+.+++. .|.+.|+++| +-
T Consensus 178 ~~~~~a~~~~~~Gf~~vKik~g~~~~~~d~e~v~avR~avG~d~~l~vDan~~~~~~~ai~~~~~l~~~~i~~i----Eq 253 (398)
T 2pp0_A 178 QVLKNVVISRENGIGGIKLKVGQPNCAEDIRRLTAVREALGDEFPLMVDANQQWDRETAIRMGRKMEQFNLIWI----EE 253 (398)
T ss_dssp HHHHHHHHHHHTTCSCEEEECCCSCHHHHHHHHHHHHHHHCSSSCEEEECTTCSCHHHHHHHHHHHGGGTCSCE----EC
T ss_pred HHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHHHcCCcee----eC
Confidence 3456677788899999988776555566688899999886 578887642 22556654 4455788877 21
Q ss_pred cccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcC-CCEEEEC
Q psy1056 403 KKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALG-ASTAMMG 459 (590)
Q Consensus 403 ~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalG-A~~v~~g 459 (590)
- +... .......++ +..++||++++.+.+..++.+++..| +|.+++-
T Consensus 254 P-----~~~~--d~~~~~~l~---~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik 301 (398)
T 2pp0_A 254 P-----LDAY--DIEGHAQLA---AALDTPIATGEMLTSFREHEQLILGNASDFVQPD 301 (398)
T ss_dssp C-----SCTT--CHHHHHHHH---HHCSSCEEECTTCCSHHHHHHHHHTTCCSEECCC
T ss_pred C-----CChh--hHHHHHHHH---hhCCCCEEecCCcCCHHHHHHHHHcCCCCEEEeC
Confidence 1 1000 222233333 34579999999999999999999988 6888664
|
| >3stp_A Galactonate dehydratase, putative; PSI biology, structural genomics, NEW YORK structural genomi research consortium; 1.88A {Labrenzia aggregata iam 12614} PDB: 3sqs_A 3ssz_A | Back alignment and structure |
|---|
Probab=92.30 E-value=1.5 Score=46.01 Aligned_cols=118 Identities=10% Similarity=-0.078 Sum_probs=80.5
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCc------hhhHHHHHHHHHHhC-CCceEEecc--ccCcHHHH----HHHHCCCCE
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQGN------SIYQIEMIKFIKKEY-PDMQVIGGN--VLFGYQPR----ATLLNFIYQ 395 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G~------~~~~l~~i~~i~~~~-~~vpvi~g~--v~s~~~a~----~l~~~Gvd~ 395 (590)
+...+.+..+++.|.+.+-+....|. ...-++.++.+|+.+ |++++++.- .-+.++|. .|.+.|+++
T Consensus 181 e~~~~~a~~~~~~Gf~~iKik~g~gp~dg~~~~~~die~v~avReavG~d~~L~vDaN~~~~~~~Ai~~~~~Le~~~i~~ 260 (412)
T 3stp_A 181 EAMQKEAEEAMKGGYKAFKSRFGYGPKDGMPGMRENLKRVEAVREVIGYDNDLMLECYMGWNLDYAKRMLPKLAPYEPRW 260 (412)
T ss_dssp HHHHHHHHHHHTTTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHGGGCCSE
T ss_pred HHHHHHHHHHHHcCCCEEEEecccCcccccchHHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCE
Confidence 34556777888899999999876541 234578889999887 578888642 22666654 455689998
Q ss_pred EEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcC-CCEEEECc
Q psy1056 396 IEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALG-ASTAMMGS 460 (590)
Q Consensus 396 i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalG-A~~v~~g~ 460 (590)
| +- . +... ... ..++..+..++||++++-+.+..++.+++..| +|.|++-.
T Consensus 261 i----Ee--P---~~~~--d~~---~~~~l~~~~~iPIa~dE~~~~~~~~~~li~~~a~D~v~ik~ 312 (412)
T 3stp_A 261 L----EE--P---VIAD--DVA---GYAELNAMNIVPISGGEHEFSVIGCAELINRKAVSVLQYDT 312 (412)
T ss_dssp E----EC--C---SCTT--CHH---HHHHHHHTCSSCEEECTTCCSHHHHHHHHHTTCCSEECCCH
T ss_pred E----EC--C---CCcc--cHH---HHHHHHhCCCCCEEeCCCCCCHHHHHHHHHcCCCCEEecCh
Confidence 8 21 1 1000 222 33333344679999999999999999999987 67886543
|
| >2qgy_A Enolase from the environmental genome shotgun sequencing of the sargasso SEA; structural genomics, unknown function, PSI-2; 1.80A {Environmental sample} | Back alignment and structure |
|---|
Probab=92.27 E-value=1.1 Score=46.60 Aligned_cols=118 Identities=7% Similarity=-0.062 Sum_probs=79.0
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhC-CCceEEecc--ccCcHHH----HHHHHCCCCEEEEcccc
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEY-PDMQVIGGN--VLFGYQP----RATLLNFIYQIEMIKFI 402 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~-~~vpvi~g~--v~s~~~a----~~l~~~Gvd~i~v~~~~ 402 (590)
...+.+..+.+.|.+.+-+..........++.++.+++.+ |++++.+.- .-+.+++ +.|.+.|+++| +-
T Consensus 152 ~~~~~a~~~~~~Gf~~vKik~g~~~~~~~~e~v~avR~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~i----Eq 227 (391)
T 2qgy_A 152 DYLRQIEKFYGKKYGGIKIYPMLDSLSISIQFVEKVREIVGDELPLMLDLAVPEDLDQTKSFLKEVSSFNPYWI----EE 227 (391)
T ss_dssp HHHHHHHHHHHTTCSCEEECCCCSSHHHHHHHHHHHHHHHCSSSCEEEECCCCSCHHHHHHHHHHHGGGCCSEE----EC
T ss_pred HHHHHHHHHHHcCCCEEEEccCCChHHHHHHHHHHHHHHhCCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCeE----eC
Confidence 4456777788899999988754322355678899999876 578888642 2255555 44556899988 21
Q ss_pred cccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcC-CCEEEECcc
Q psy1056 403 KKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALG-ASTAMMGSL 461 (590)
Q Consensus 403 ~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalG-A~~v~~g~~ 461 (590)
. +..+ ....+..++ +..++||++++.+.++.++.+++..| +|.|++-..
T Consensus 228 --P---~~~~--d~~~~~~l~---~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~ 277 (391)
T 2qgy_A 228 --P---VDGE--NISLLTEIK---NTFNMKVVTGEKQSGLVHFRELISRNAADIFNPDIS 277 (391)
T ss_dssp --S---SCTT--CHHHHHHHH---HHCSSCEEECTTCCSHHHHHHHHHTTCCSEECCBTT
T ss_pred --C---CChh--hHHHHHHHH---hhCCCCEEEcCCcCCHHHHHHHHHcCCCCEEEECcc
Confidence 1 1100 222333333 34579999999999999999999987 688877533
|
| >1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6 | Back alignment and structure |
|---|
Probab=92.25 E-value=2.4 Score=43.61 Aligned_cols=123 Identities=15% Similarity=0.066 Sum_probs=80.1
Q ss_pred eEEeEeeccc-----hhHHHHHHHHHHcCCcEEEEecC-------------C----------------CchhhHHHHHHH
Q psy1056 319 LIVGAAIGTR-----EADKNRLKLLSQAGVDVVILDSS-------------Q----------------GNSIYQIEMIKF 364 (590)
Q Consensus 319 l~v~a~i~~~-----~~~~e~~~~li~~gad~i~V~~~-------------~----------------G~~~~~l~~i~~ 364 (590)
.++.+.++.. +...+.++...++||+++-.... + +........+..
T Consensus 29 ~~IIAEiG~NH~Gsle~A~~li~~Ak~aGAdavKfQ~~k~~tl~s~~~~~fq~~~~~~~~~ye~~~~~~l~~e~~~~L~~ 108 (385)
T 1vli_A 29 VFIIAEAGINHDGKLDQAFALIDAAAEAGADAVKFQMFQADRMYQKDPGLYKTAAGKDVSIFSLVQSMEMPAEWILPLLD 108 (385)
T ss_dssp CEEEEEEETTTTTCHHHHHHHHHHHHHHTCSEEEECCBCGGGGTSCCC---------CCCHHHHGGGBSSCGGGHHHHHH
T ss_pred cEEEEeecCcccccHHHHHHHHHHHHHhCCCEEeeeeeccCcccCcchhhhccCCCCCccHHHHHHhcCCCHHHHHHHHH
Confidence 3555655432 23445677778889999865421 1 111123455666
Q ss_pred HHHhCCCceEEeccccCcHHHHHHHHCCCCEEEE-cccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHH
Q psy1056 365 IKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEM-IKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVG 443 (590)
Q Consensus 365 i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v-~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~ 443 (590)
.++.. +++++. ++.+.+.+..|.+.|+|++.| |-+.+. +..+...+ +.+.|||.+-|+.|-.
T Consensus 109 ~~~~~-Gi~~~s-tpfD~~svd~l~~~~vd~~KIgS~~~~N--------------~pLL~~va-~~gKPViLStGmaTl~ 171 (385)
T 1vli_A 109 YCREK-QVIFLS-TVCDEGSADLLQSTSPSAFKIASYEINH--------------LPLLKYVA-RLNRPMIFSTAGAEIS 171 (385)
T ss_dssp HHHHT-TCEEEC-BCCSHHHHHHHHTTCCSCEEECGGGTTC--------------HHHHHHHH-TTCSCEEEECTTCCHH
T ss_pred HHHHc-CCcEEE-ccCCHHHHHHHHhcCCCEEEECcccccC--------------HHHHHHHH-hcCCeEEEECCCCCHH
Confidence 66665 677654 899999999999999999987 333221 12334333 4689999999999999
Q ss_pred HHHHHHH----cCC-CEEEE
Q psy1056 444 HVMKALA----LGA-STAMM 458 (590)
Q Consensus 444 di~kala----lGA-~~v~~ 458 (590)
++..|.. .|. +.+.+
T Consensus 172 Ei~~Ave~i~~~Gn~~iiLl 191 (385)
T 1vli_A 172 DVHEAWRTIRAEGNNQIAIM 191 (385)
T ss_dssp HHHHHHHHHHTTTCCCEEEE
T ss_pred HHHHHHHHHHHCCCCcEEEE
Confidence 9988764 476 44443
|
| >3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.14 E-value=0.82 Score=45.08 Aligned_cols=114 Identities=14% Similarity=0.107 Sum_probs=64.6
Q ss_pred HHHHHHHHHcCCcEEEEec--CCCchhhHHHHHHHHHHhCCCceEEeccc----cCc-HHHHHHHHCCCCEEEEcccccc
Q psy1056 332 KNRLKLLSQAGVDVVILDS--SQGNSIYQIEMIKFIKKEYPDMQVIGGNV----LFG-YQPRATLLNFIYQIEMIKFIKK 404 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~--~~G~~~~~l~~i~~i~~~~~~vpvi~g~v----~s~-~~a~~l~~~Gvd~i~v~~~~~~ 404 (590)
.+.+..+.++|++.+++-. .+|.. ......+.+...- ..++...-- .++ +..++|+++|++-|-.+.. .
T Consensus 114 ~~dI~~~~~~GAdGvVfG~L~~dg~i-D~~~~~~Li~~a~-~l~vTFHRAFD~~~d~~~Ale~Li~lGvdrILTSG~--~ 189 (287)
T 3iwp_A 114 KADIRLAKLYGADGLVFGALTEDGHI-DKELCMSLMAICR-PLPVTFHRAFDMVHDPMAALETLLTLGFERVLTSGC--D 189 (287)
T ss_dssp HHHHHHHHHTTCSEEEECCBCTTSCB-CHHHHHHHHHHHT-TSCEEECGGGGGCSCHHHHHHHHHHHTCSEEEECTT--S
T ss_pred HHHHHHHHHcCCCEEEEeeeCCCCCc-CHHHHHHHHHHcC-CCcEEEECchhccCCHHHHHHHHHHcCCCEEECCCC--C
Confidence 3467788899999999865 44432 1111222222322 467775433 234 4446788899998822211 0
Q ss_pred cCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHH-cCCCEE
Q psy1056 405 EYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALA-LGASTA 456 (590)
Q Consensus 405 ~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kala-lGA~~v 456 (590)
. ..-. ....|.++.+.+. ..++|++.||| +...+.+-++ .|++.+
T Consensus 190 ~---~a~~--Gl~~Lk~Lv~~a~-~rI~ImaGGGV-~~~Ni~~l~~~tG~~~~ 235 (287)
T 3iwp_A 190 S---SALE--GLPLIKRLIEQAK-GRIVVMPGGGI-TDRNLQRILEGSGATEF 235 (287)
T ss_dssp S---STTT--THHHHHHHHHHHT-TSSEEEECTTC-CTTTHHHHHHHHCCSEE
T ss_pred C---ChHH--hHHHHHHHHHHhC-CCCEEEECCCc-CHHHHHHHHHhhCCCEE
Confidence 0 0011 2233444444332 25999999999 4566666555 899999
|
| >2gdq_A YITF; mandelate racemase/muconate lactonizing enzyme, TIM-barrel, octamer, structural genomics, PSI; 1.80A {Bacillus subtilis subsp} SCOP: c.1.11.2 d.54.1.1 PDB: 2gge_A | Back alignment and structure |
|---|
Probab=92.13 E-value=0.83 Score=47.33 Aligned_cols=118 Identities=10% Similarity=-0.008 Sum_probs=80.6
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhC-CCceEEecc--ccCcHHH----HHHHHC-CCCEEEEcc
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEY-PDMQVIGGN--VLFGYQP----RATLLN-FIYQIEMIK 400 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~-~~vpvi~g~--v~s~~~a----~~l~~~-Gvd~i~v~~ 400 (590)
+...+.+..+.+.|.+.+-+...+++....++.++.+++.+ +++++.+.- .-+.++| +.|.+. |+++|
T Consensus 141 e~~~~~a~~~~~~Gf~~vKik~g~~~~~~d~e~v~avR~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~~i~~i---- 216 (382)
T 2gdq_A 141 SRSVSNVEAQLKKGFEQIKVKIGGTSFKEDVRHINALQHTAGSSITMILDANQSYDAAAAFKWERYFSEWTNIGWL---- 216 (382)
T ss_dssp HHHHHHHHHHHTTTCCEEEEECSSSCHHHHHHHHHHHHHHHCTTSEEEEECTTCCCHHHHHTTHHHHTTCSCEEEE----
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHHHhhccCCeEE----
Confidence 34456677788899999998877655666788899999877 578888642 2255655 344456 77777
Q ss_pred cccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcC-CCEEEECc
Q psy1056 401 FIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALG-ASTAMMGS 460 (590)
Q Consensus 401 ~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalG-A~~v~~g~ 460 (590)
+-- +. ...+...++..+..++||++++.+.+..++.+++..| +|.+++-.
T Consensus 217 EqP-----~~-----~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~ 267 (382)
T 2gdq_A 217 EEP-----LP-----FDQPQDYAMLRSRLSVPVAGGENMKGPAQYVPLLSQRCLDIIQPDV 267 (382)
T ss_dssp ECC-----SC-----SSCHHHHHHHHTTCSSCEEECTTCCSHHHHHHHHHTTCCSEECCCT
T ss_pred ECC-----CC-----cccHHHHHHHHhhCCCCEEecCCcCCHHHHHHHHHcCCCCEEecCc
Confidence 211 10 0112233444445579999999999999999999987 68886643
|
| >2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A | Back alignment and structure |
|---|
Probab=91.86 E-value=2.5 Score=43.06 Aligned_cols=112 Identities=15% Similarity=0.076 Sum_probs=76.3
Q ss_pred hHHHHHHHHHHcCCcEEEEec--------C-----CC---------------chhhHHHHHHHHHHhCCCceEEeccccC
Q psy1056 330 ADKNRLKLLSQAGVDVVILDS--------S-----QG---------------NSIYQIEMIKFIKKEYPDMQVIGGNVLF 381 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~--------~-----~G---------------~~~~~l~~i~~i~~~~~~vpvi~g~v~s 381 (590)
...+.++...++|++++-... . ++ ........+...++.. +++++. ++.+
T Consensus 36 ~a~~li~~ak~aGadavKfq~~k~~tl~s~~~~~fq~~~~~~~~y~~~~~~~l~~e~~~~L~~~~~~~-Gi~~~s-t~~d 113 (349)
T 2wqp_A 36 TAFEMVDAAYNAGAEVVKHQTHIVEDEMSDEAKQVIPGNADVSIYEIMERCALNEEDEIKLKEYVESK-GMIFIS-TLFS 113 (349)
T ss_dssp HHHHHHHHHHHHTCSEEEEEECCHHHHCCGGGGGCCCTTCSSCHHHHHHHHCCCHHHHHHHHHHHHHT-TCEEEE-EECS
T ss_pred HHHHHHHHHHHhCCCEEeeeecccccccCcchhccccCCCCccHHHHHHHhCCCHHHHHHHHHHHHHh-CCeEEE-eeCC
Confidence 445567788889999986642 1 11 1122345556666665 677665 8999
Q ss_pred cHHHHHHHHCCCCEEEE-cccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHH----cCCCEE
Q psy1056 382 GYQPRATLLNFIYQIEM-IKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALA----LGASTA 456 (590)
Q Consensus 382 ~~~a~~l~~~Gvd~i~v-~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kala----lGA~~v 456 (590)
.+.+..|.+.|+|++.| |-+.+. +..+...+ +.+.|||.+-|+.|-.++..|.. .|.+.+
T Consensus 114 ~~svd~l~~~~v~~~KI~S~~~~n--------------~~LL~~va-~~gkPviLstGmat~~Ei~~Ave~i~~~G~~ii 178 (349)
T 2wqp_A 114 RAAALRLQRMDIPAYKIGSGECNN--------------YPLIKLVA-SFGKPIILSTGMNSIESIKKSVEIIREAGVPYA 178 (349)
T ss_dssp HHHHHHHHHHTCSCEEECGGGTTC--------------HHHHHHHH-TTCSCEEEECTTCCHHHHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHhcCCCEEEECcccccC--------------HHHHHHHH-hcCCeEEEECCCCCHHHHHHHHHHHHHcCCCEE
Confidence 99999999999999977 322221 12333333 46899999999999999987753 577766
Q ss_pred EE
Q psy1056 457 MM 458 (590)
Q Consensus 457 ~~ 458 (590)
.+
T Consensus 179 Ll 180 (349)
T 2wqp_A 179 LL 180 (349)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
| >2p8b_A Mandelate racemase/muconate lactonizing enzyme family protein; enolase superfamily, prediction of function; HET: NSK; 1.70A {Bacillus cereus atcc 14579} PDB: 2p88_A* 2p8c_A* | Back alignment and structure |
|---|
Probab=91.82 E-value=2.5 Score=43.36 Aligned_cols=117 Identities=15% Similarity=0.118 Sum_probs=78.9
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhC-CCceEEeccc--cCcHHHH-HHHH----CCCCEEEEcc
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEY-PDMQVIGGNV--LFGYQPR-ATLL----NFIYQIEMIK 400 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~-~~vpvi~g~v--~s~~~a~-~l~~----~Gvd~i~v~~ 400 (590)
+...+.+..+.+.|.+.+-++..+ +....++.++.+++.+ |++++.+.-- -+.+++. ++.+ .|+++|
T Consensus 143 ~~~~~~a~~~~~~Gf~~iKik~g~-~~~~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~~l~~~~i~~i---- 217 (369)
T 2p8b_A 143 ENMAEEAASMIQKGYQSFKMKVGT-NVKEDVKRIEAVRERVGNDIAIRVDVNQGWKNSANTLTALRSLGHLNIDWI---- 217 (369)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCS-CHHHHHHHHHHHHHHHCTTSEEEEECTTTTBSHHHHHHHHHTSTTSCCSCE----
T ss_pred HHHHHHHHHHHHcCcCEEEEEeCC-CHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEE----
Confidence 344567777888999999887654 3455678899999877 5788876422 2666665 5443 677776
Q ss_pred cccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcC-CCEEEECc
Q psy1056 401 FIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALG-ASTAMMGS 460 (590)
Q Consensus 401 ~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalG-A~~v~~g~ 460 (590)
+- . + .. ..+...++..+..++||++++.+.++.++.+++..| +|.|++-.
T Consensus 218 Eq--P---~---~~--~d~~~~~~l~~~~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~ 268 (369)
T 2p8b_A 218 EQ--P---V---IA--DDIDAMAHIRSKTDLPLMIDEGLKSSREMRQIIKLEAADKVNIKL 268 (369)
T ss_dssp EC--C---B---CT--TCHHHHHHHHHTCCSCEEESTTCCSHHHHHHHHHHTCCSEEEECH
T ss_pred EC--C---C---Cc--ccHHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHhCCCCEEEeec
Confidence 21 1 1 11 112223333344579999999999999999999986 78888854
|
| >3ru6_A Orotidine 5'-phosphate decarboxylase; structural genomics, center for structural genomics of infec diseases (csgid), TIM-barrel; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=91.80 E-value=1.9 Score=42.95 Aligned_cols=112 Identities=14% Similarity=0.130 Sum_probs=64.3
Q ss_pred HHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEec-cccC---cH----------------HHHHHHHCCC
Q psy1056 334 RLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGG-NVLF---GY----------------QPRATLLNFI 393 (590)
Q Consensus 334 ~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g-~v~s---~~----------------~a~~l~~~Gv 393 (590)
.+..+.+.|+|.+.++...|.. .++......+.+...|.+++ .+.| .+ -|+.+.++|+
T Consensus 95 av~~~a~lGaD~vTVHa~~G~~--~m~aa~e~a~~~~~~~~llaVtvLTS~s~~~l~~l~~~~~~e~V~~lA~~a~~~G~ 172 (303)
T 3ru6_A 95 ACEEVSKLGVDMINIHASAGKI--AIQEVMTRLSKFSKRPLVLAVSALTSFDEENFFSIYRQKIEEAVINFSKISYENGL 172 (303)
T ss_dssp HHHHHHTTTCSEEEEEGGGCHH--HHHHHHHHHTTSSSCCEEEEECSCTTCCHHHHHHHHSSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCCEEEEeccCCHH--HHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Confidence 4566777899999998876632 22222222222322233321 2221 11 2334556888
Q ss_pred CEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHH----------HHHHHHHcCCCEEEECcccc
Q psy1056 394 YQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVG----------HVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 394 d~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~----------di~kalalGA~~v~~g~~l~ 463 (590)
+++ +|...+ +..+++.+.. -.++..+||+-.+ .+..|+..|||.+++|+++.
T Consensus 173 dGv---V~s~~E-------------~~~IR~~~~~--~fl~VTPGIr~qG~~~~DQ~Rv~t~~~a~~aGAd~iVvGr~I~ 234 (303)
T 3ru6_A 173 DGM---VCSVFE-------------SKKIKEHTSS--NFLTLTPGIRPFGETNDDQKRVANLAMARENLSDYIVVGRPIY 234 (303)
T ss_dssp SEE---ECCTTT-------------HHHHHHHSCT--TSEEEECCCCTTC--------CCSHHHHHHTTCSEEEECHHHH
T ss_pred CEE---EECHHH-------------HHHHHHhCCC--ccEEECCCcCcccCCcccccccCCHHHHHHcCCCEEEEChHHh
Confidence 887 453332 3345554422 3577889998332 36667788999999999886
Q ss_pred CC
Q psy1056 464 GT 465 (590)
Q Consensus 464 ~~ 465 (590)
.+
T Consensus 235 ~a 236 (303)
T 3ru6_A 235 KN 236 (303)
T ss_dssp TS
T ss_pred CC
Confidence 54
|
| >3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=91.72 E-value=0.24 Score=50.90 Aligned_cols=135 Identities=28% Similarity=0.351 Sum_probs=112.4
Q ss_pred EeccccccccCCCCCCC-C-ccCCcc--cccccccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCc--------
Q psy1056 69 VTSRDVDFLENSANMDL-K-IEKDLS--SPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTRE-------- 136 (590)
Q Consensus 69 vT~~Did~l~~~~~~~~-~-~~~~~~--~~l~~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~-------- 136 (590)
+|++ |+++.|+.+.. + +++|++ +.+ ..+.++.|+++++|+++++..++.+++..||+|++|.+.+
T Consensus 8 ~~fd--dv~l~P~~~~~~~r~~vd~~~~t~l-~g~~l~~Pii~ApM~~vte~~lA~A~a~~Gg~gvi~~~~s~ee~~~~i 84 (361)
T 3r2g_A 8 ITFD--DVLLVPSYNHHESRRVVETTSTDRL-GKLTLNLPVISANMDTITESNMANFMHSKGAMGALHRFMTIEENIQEF 84 (361)
T ss_dssp CCGG--GEEECCCCCCSCTTCCCCCCEECTT-SSCEESSCEEECCSTTTCSHHHHHHHHHTTCEEBCCSCSCHHHHHHHH
T ss_pred cccc--eEEEECCCCCCCccccccceeeEEE-CCEEcCCCEEECCCCCchHHHHHHHHHHcCCCEEEeCCCCHHHHHHHH
Confidence 7888 88888998877 5 575544 477 5788899999999999999999999999999999998743
Q ss_pred ---------------chHHHHHHHHHcCCcEEEEcCCCCchHHHHHHHHHhhhcCCCcccccccccchHHHHHHHHHhcc
Q psy1056 137 ---------------ADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVD 201 (590)
Q Consensus 137 ---------------d~~~~~~~l~~~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~im~~~~~~~~~~~~a~~~m~~ 201 (590)
+..++++.++++|+|+|.+|.++++.....+.++++++.++...++.+++.+.+..+.+.+..+|
T Consensus 85 ~~~~~~~~~~~g~~~~~~e~~~~a~~aGvdvI~id~a~G~~~~~~e~I~~ir~~~~~~~Vi~G~V~T~e~A~~a~~aGaD 164 (361)
T 3r2g_A 85 KKCKGPVFVSVGCTENELQRAEALRDAGADFFCVDVAHAHAKYVGKTLKSLRQLLGSRCIMAGNVATYAGADYLASCGAD 164 (361)
T ss_dssp HTCCSCCBEEECSSHHHHHHHHHHHHTTCCEEEEECSCCSSHHHHHHHHHHHHHHTTCEEEEEEECSHHHHHHHHHTTCS
T ss_pred hhcceEEEEEcCCCHHHHHHHHHHHHcCCCEEEEeCCCCCcHhHHHHHHHHHHhcCCCeEEEcCcCCHHHHHHHHHcCCC
Confidence 24677888999999999999999998888889999998666666777777776677888888888
Q ss_pred ccccc
Q psy1056 202 GLRVG 206 (590)
Q Consensus 202 ~~~v~ 206 (590)
+|+||
T Consensus 165 ~I~Vg 169 (361)
T 3r2g_A 165 IIKAG 169 (361)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 88776
|
| >3ozy_A Putative mandelate racemase; beta-alpha barrel, enolase superfamily member, M-xylarate, U function; HET: DXL; 1.30A {Bordetella bronchiseptica} PDB: 3ozm_A* 3h12_A 3op2_A* | Back alignment and structure |
|---|
Probab=91.40 E-value=2 Score=44.48 Aligned_cols=119 Identities=7% Similarity=-0.022 Sum_probs=82.3
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhC-CCceEEec-ccc-CcHHH----HHHHHCCCCEEEEccc
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEY-PDMQVIGG-NVL-FGYQP----RATLLNFIYQIEMIKF 401 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~-~~vpvi~g-~v~-s~~~a----~~l~~~Gvd~i~v~~~ 401 (590)
+...+.++.+.+.|.+.+-+.... +...-++.++.+++.+ |+.++.+. |.+ +.++| +.|.+.|+++| +
T Consensus 153 e~~~~~a~~~~~~G~~~iKiKvG~-~~~~d~~~v~avR~a~g~d~~l~vDan~~~~~~~A~~~~~~l~~~~i~~i----E 227 (389)
T 3ozy_A 153 DQAADELAGWVEQGFTAAKLKVGR-APRKDAANLRAMRQRVGADVEILVDANQSLGRHDALAMLRILDEAGCYWF----E 227 (389)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCS-CHHHHHHHHHHHHHHHCTTSEEEEECTTCCCHHHHHHHHHHHHHTTCSEE----E
T ss_pred HHHHHHHHHHHHCCCCEEeeccCC-CHHHHHHHHHHHHHHcCCCceEEEECCCCcCHHHHHHHHHHHHhcCCCEE----E
Confidence 445567788888999999887643 3455678899999887 57888864 222 56655 45667899998 2
Q ss_pred ccccCCCccccccchhHHHHHHHHH-hcCCCcEEecCCCCCHHHHHHHHHcC-CCEEEECccc
Q psy1056 402 IKKEYPDMQVIGRNGTAVYRVAEYA-SRRGVPVIADGGVQSVGHVMKALALG-ASTAMMGSLL 462 (590)
Q Consensus 402 ~~~~~~~~~~~g~~~~~l~~~~~~~-~~~~v~iia~GGi~~~~di~kalalG-A~~v~~g~~l 462 (590)
- . +. ...+...++.. ...++||++++.+.+..|+.+++..| +|.|++-...
T Consensus 228 q--P---~~-----~~d~~~~~~l~~~~~~iPIa~dE~i~~~~~~~~~i~~~~~d~v~ik~~~ 280 (389)
T 3ozy_A 228 E--P---LS-----IDDIEGHRILRAQGTPVRIATGENLYTRNAFNDYIRNDAIDVLQADASR 280 (389)
T ss_dssp S--C---SC-----TTCHHHHHHHHTTCCSSEEEECTTCCHHHHHHHHHHTTCCSEECCCTTT
T ss_pred C--C---CC-----cccHHHHHHHHhcCCCCCEEeCCCCCCHHHHHHHHHcCCCCEEEeCccc
Confidence 1 1 11 11123344444 45679999999999999999999886 6888776444
|
| >3rcy_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, protein structure initiative; HET: RIB; 1.99A {Roseovarius SP} PDB: 3t4w_A | Back alignment and structure |
|---|
Probab=91.40 E-value=3.4 Score=43.45 Aligned_cols=117 Identities=15% Similarity=0.066 Sum_probs=78.9
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCC------C------chhhHHHHHHHHHHhC-CCceEEecc--ccCcHHHH----HHH
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQ------G------NSIYQIEMIKFIKKEY-PDMQVIGGN--VLFGYQPR----ATL 389 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~------G------~~~~~l~~i~~i~~~~-~~vpvi~g~--v~s~~~a~----~l~ 389 (590)
+...+.++..++.|...+-+.... | +....++.++.+|+.+ +++++++.- .-+.++|. .|.
T Consensus 148 e~~~~~a~~~~~~Gf~~iKlk~g~~~~~~~G~~~~~~~~~~d~e~v~avR~avG~d~~L~vDan~~~t~~~A~~~~~~Le 227 (433)
T 3rcy_A 148 DMAAESAADCVARGYTAVKFDPAGPYTLRGGHMPAMTDISLSVEFCRKIRAAVGDKADLLFGTHGQFTTAGAIRLGQAIE 227 (433)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCSCCCBTTCCBCCCHHHHHHHHHHHHHHHHHHTTSSEEEECCCSCBCHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCcccccCCCcchhhHHHHHHHHHHHHHHhCCCCeEEEeCCCCCCHHHHHHHHHHhh
Confidence 455667788889999999887542 1 1234578889999887 578888642 22666654 455
Q ss_pred HCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcC-CCEEEEC
Q psy1056 390 LNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALG-ASTAMMG 459 (590)
Q Consensus 390 ~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalG-A~~v~~g 459 (590)
+.|+++| +-- +... ....+..++ +..++||++++.+.+..|+.+++..| +|.+++-
T Consensus 228 ~~~i~~i----EeP-----~~~~--~~~~~~~l~---~~~~iPIa~dE~~~~~~~~~~~l~~g~~D~v~~d 284 (433)
T 3rcy_A 228 PYSPLWY----EEP-----VPPD--NVGAMAQVA---RAVRIPVATGERLTTKAEFAPVLREGAAAILQPA 284 (433)
T ss_dssp GGCCSEE----ECC-----SCTT--CHHHHHHHH---HHSSSCEEECTTCCSHHHHHHHHHTTCCSEECCC
T ss_pred hcCCCEE----ECC-----CChh--hHHHHHHHH---hccCCCEEecCCCCCHHHHHHHHHcCCCCEEEeC
Confidence 5888888 211 1000 222333333 34579999999999999999999987 6888664
|
| >1tkk_A Similar to chloromuconate cycloisomerase; epimerase, enolase super family,; 2.10A {Bacillus subtilis} SCOP: c.1.11.2 d.54.1.1 PDB: 1jpm_A | Back alignment and structure |
|---|
Probab=91.38 E-value=2.1 Score=43.89 Aligned_cols=118 Identities=13% Similarity=0.056 Sum_probs=80.1
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhC-CCceEEecccc--CcHHH----HHHHH--CCCCEEEEc
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEY-PDMQVIGGNVL--FGYQP----RATLL--NFIYQIEMI 399 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~-~~vpvi~g~v~--s~~~a----~~l~~--~Gvd~i~v~ 399 (590)
+...+.+..+.+.|.+.+-+....++....++.++.+++.+ |++++.+.-=. +.++| +.|.+ .|+++|
T Consensus 142 ~~~~~~a~~~~~~Gf~~iKik~g~~~~~~d~~~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~~~i~~i--- 218 (366)
T 1tkk_A 142 EEMAADAENYLKQGFQTLKIKVGKDDIATDIARIQEIRKRVGSAVKLRLDANQGWRPKEAVTAIRKMEDAGLGIELV--- 218 (366)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCSSCHHHHHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHHHTTCCEEEE---
T ss_pred HHHHHHHHHHHHcCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCceEE---
Confidence 34456677778889999988776545566688899999877 57888764222 55555 45666 777777
Q ss_pred ccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcC-CCEEEECc
Q psy1056 400 KFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALG-ASTAMMGS 460 (590)
Q Consensus 400 ~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalG-A~~v~~g~ 460 (590)
+- . +... ....+..++ +..++||++++-+.+..++.+++..| +|.+++-.
T Consensus 219 -Eq--P---~~~~--d~~~~~~l~---~~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~ik~ 269 (366)
T 1tkk_A 219 -EQ--P---VHKD--DLAGLKKVT---DATDTPIMADESVFTPRQAFEVLQTRSADLINIKL 269 (366)
T ss_dssp -EC--C---SCTT--CHHHHHHHH---HHCSSCEEECTTCCSHHHHHHHHHHTCCSEEEECH
T ss_pred -EC--C---CCcc--cHHHHHHHH---hhCCCCEEEcCCCCCHHHHHHHHHhCCCCEEEeeh
Confidence 21 1 1000 222333333 34579999999999999999999877 78887754
|
| >2qdd_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.30A {Roseovarius nubinhibens} PDB: 3fvd_B | Back alignment and structure |
|---|
Probab=91.24 E-value=3.3 Score=42.59 Aligned_cols=117 Identities=13% Similarity=0.018 Sum_probs=80.7
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhC-CCceEEeccc--cCcHHHHHHHH---CCCCEEEEcccc
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEY-PDMQVIGGNV--LFGYQPRATLL---NFIYQIEMIKFI 402 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~-~~vpvi~g~v--~s~~~a~~l~~---~Gvd~i~v~~~~ 402 (590)
+...+.+..+.+.|.+.+-+....++....++.++.+++.+ +++++.+.-- -+.+++.++.+ .|+ +| +
T Consensus 147 e~~~~~a~~~~~~Gf~~iKik~g~~~~~~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~i-~i----E- 220 (378)
T 2qdd_A 147 DQMLGLIAEAAAQGYRTHSAKIGGSDPAQDIARIEAISAGLPDGHRVTFDVNRAWTPAIAVEVLNSVRARD-WI----E- 220 (378)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCSSCHHHHHHHHHHHHHSCCTTCEEEEECTTCCCHHHHHHHHTSCCCCC-EE----E-
T ss_pred HHHHHHHHHHHHHhhhheeecCCCCChHHHHHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHhCCCc-EE----E-
Confidence 34456677788889999998876655566788999999987 4788876422 26777766554 355 54 2
Q ss_pred cccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcC-CCEEEECccc
Q psy1056 403 KKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALG-ASTAMMGSLL 462 (590)
Q Consensus 403 ~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalG-A~~v~~g~~l 462 (590)
.. +. .+...++..+..++||++++-+.++.++.+++..| +|.|++....
T Consensus 221 -qP---~~-------d~~~~~~l~~~~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~~ 270 (378)
T 2qdd_A 221 -QP---CQ-------TLDQCAHVARRVANPIMLDECLHEFSDHLAAWSRGACEGVKIKPNR 270 (378)
T ss_dssp -CC---SS-------SHHHHHHHHTTCCSCEEECTTCCSHHHHHHHHHHTCCSEEEECHHH
T ss_pred -cC---CC-------CHHHHHHHHHhCCCCEEECCCcCCHHHHHHHHHhCCCCEEEecccc
Confidence 11 11 12233444445579999999999999999999877 7888886433
|
| >1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=91.07 E-value=0.61 Score=49.30 Aligned_cols=69 Identities=13% Similarity=0.160 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCC--------------ch-----hhHHHHHHHHHHhCC-CceEE-eccccCcHHHHHH
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQG--------------NS-----IYQIEMIKFIKKEYP-DMQVI-GGNVLFGYQPRAT 388 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G--------------~~-----~~~l~~i~~i~~~~~-~vpvi-~g~v~s~~~a~~l 388 (590)
+..+.++.+.++|+|.+.+..... .+ ...++.+..+++..+ ++||| +|+|.|.++|.+.
T Consensus 312 d~~~iA~~~~~aGaDgI~v~ntt~~~~d~~~~~~~~GGlSG~~~~~~sl~~i~~v~~~v~~~iPVIg~GGI~s~~DA~e~ 391 (443)
T 1tv5_A 312 QKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLDALEK 391 (443)
T ss_dssp HHHHHHHHHHHTTCSEEEECCCBSCCCCCGGGTTCCSEEEEHHHHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEECCCcccccccccccccCCcCCCcchHHHHHHHHHHHHHcCCCCcEEEECCCCCHHHHHHH
Confidence 456678899999999998865311 11 113578888888874 68988 7899999999999
Q ss_pred HHCCCCEEEE
Q psy1056 389 LLNFIYQIEM 398 (590)
Q Consensus 389 ~~~Gvd~i~v 398 (590)
+.+|||.|-+
T Consensus 392 l~aGAd~Vqi 401 (443)
T 1tv5_A 392 IEAGASVCQL 401 (443)
T ss_dssp HHTTEEEEEE
T ss_pred HHcCCCEEEE
Confidence 9999999833
|
| >3tfx_A Orotidine 5'-phosphate decarboxylase; PSI-biology, nysgrc, 000529, structural genomics, NEW YORK S genomics research consortium; 2.19A {Lactobacillus acidophilus} | Back alignment and structure |
|---|
Probab=91.02 E-value=2.2 Score=41.59 Aligned_cols=129 Identities=12% Similarity=0.095 Sum_probs=70.5
Q ss_pred ceEEeEeeccchhH-HHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCC-C--ce-EEecccc-Cc---------
Q psy1056 318 QLIVGAAIGTREAD-KNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYP-D--MQ-VIGGNVL-FG--------- 382 (590)
Q Consensus 318 ~l~v~a~i~~~~~~-~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~-~--vp-vi~g~v~-s~--------- 382 (590)
.++....+..-+.+ ...++.+.+.|+|.+.|+..-|.. .+...++.+++..+ + .| +++=.+. |.
T Consensus 58 ~VflDlK~~DIpnTv~~a~~~~~~~gad~vTVh~~~G~~-~~~aa~~~~~~~~~~g~~~~~li~Vt~lTS~~~~~l~~~~ 136 (259)
T 3tfx_A 58 KIFLDLKMHDIPNTVYNGAKALAKLGITFTTVHALGGSQ-MIKSAKDGLIAGTPAGHSVPKLLAVTELTSISDDVLRNEQ 136 (259)
T ss_dssp EEEEEEEECSCHHHHHHHHHHHHTTTCSEEEEEGGGCHH-HHHHHHHHHHHHSCTTSCCCEEEEECSCTTCCHHHHHHTS
T ss_pred cEEEEecccccchHHHHHHHHHHhcCCCEEEEcCCCCHH-HHHHHHHHHHHhcccCCCCceEEEEEEeCCCCHHHHHHHh
Confidence 33444444332333 234566778899999998876632 22223333333211 1 22 3321222 21
Q ss_pred -----------HHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHH-------
Q psy1056 383 -----------YQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGH------- 444 (590)
Q Consensus 383 -----------~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~d------- 444 (590)
+-|+.+.++|+|++ +|...+ +..+++.+.. -.++...|||-.++
T Consensus 137 g~~~~~~e~v~~~A~~a~~~G~dGv---V~s~~e-------------~~~ir~~~~~--~f~~vtPGIr~~g~~~gDQ~R 198 (259)
T 3tfx_A 137 NCRLPMAEQVLSLAKMAKHSGADGV---ICSPLE-------------VKKLHENIGD--DFLYVTPGIRPAGNAKDDQSR 198 (259)
T ss_dssp CBSSCHHHHHHHHHHHHHHTTCCEE---ECCGGG-------------HHHHHHHHCS--SSEEEECCCCCC---------
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCEE---EECHHH-------------HHHHHhhcCC--ccEEEcCCcCCCCCCcCCccc
Confidence 12344456788877 444332 3455655532 34677889986432
Q ss_pred ---HHHHHHcCCCEEEECccccCC
Q psy1056 445 ---VMKALALGASTAMMGSLLAGT 465 (590)
Q Consensus 445 ---i~kalalGA~~v~~g~~l~~~ 465 (590)
+..|+..|||.+++|+++..+
T Consensus 199 v~T~~~a~~aGad~iVvGr~I~~a 222 (259)
T 3tfx_A 199 VATPKMAKEWGSSAIVVGRPITLA 222 (259)
T ss_dssp --CHHHHHHTTCSEEEECHHHHTS
T ss_pred cCCHHHHHHcCCCEEEEChHHhCC
Confidence 778899999999999988544
|
| >3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C* | Back alignment and structure |
|---|
Probab=90.86 E-value=0.65 Score=47.58 Aligned_cols=68 Identities=13% Similarity=0.250 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHcCCcEEEEecCC---Cchh--------hHHHHHHHHHHhCCCceEEe-ccccCcHHHHHHHHCCCCEEE
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQ---GNSI--------YQIEMIKFIKKEYPDMQVIG-GNVLFGYQPRATLLNFIYQIE 397 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~---G~~~--------~~l~~i~~i~~~~~~vpvi~-g~v~s~~~a~~l~~~Gvd~i~ 397 (590)
+..+.++.+.++|++.++++... |... ...+.+..+++.+|++||++ |++.|.+++.++++ |+|+|-
T Consensus 145 ~~~~~a~~l~~aG~d~I~V~~r~~~~g~~g~~~~~~~~~~~~~i~~ik~~~~~iPVianGgI~s~eda~~~l~-GaD~V~ 223 (350)
T 3b0p_A 145 GLAQSVEAMAEAGVKVFVVHARSALLALSTKANREIPPLRHDWVHRLKGDFPQLTFVTNGGIRSLEEALFHLK-RVDGVM 223 (350)
T ss_dssp HHHHHHHHHHHTTCCEEEEECSCBC----------CCCCCHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHT-TSSEEE
T ss_pred HHHHHHHHHHHcCCCEEEEecCchhcccCcccccCCCcccHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHh-CCCEEE
Confidence 45677888999999999997632 2110 12577888999887899985 77789999999998 999995
Q ss_pred E
Q psy1056 398 M 398 (590)
Q Consensus 398 v 398 (590)
+
T Consensus 224 i 224 (350)
T 3b0p_A 224 L 224 (350)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=90.85 E-value=0.82 Score=43.15 Aligned_cols=116 Identities=7% Similarity=-0.036 Sum_probs=74.1
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCc-hhh---HHHHHHHHHHhCCCceEEeccc-cCc-HHHHHHHHCCCCEEEEcccc
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQGN-SIY---QIEMIKFIKKEYPDMQVIGGNV-LFG-YQPRATLLNFIYQIEMIKFI 402 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G~-~~~---~l~~i~~i~~~~~~vpvi~g~v-~s~-~~a~~l~~~Gvd~i~v~~~~ 402 (590)
.+..+.++.+.+.|++.++++...|. ... -.+.++.+++.. +.|+.++-. .+. +.++.+.++|+|++-+....
T Consensus 16 ~~~~~~~~~~~~~G~~~i~~~~~dg~~~~~~~~g~~~i~~i~~~~-~~~~~v~l~v~d~~~~i~~~~~~gad~v~vh~~~ 94 (220)
T 2fli_A 16 ANFASELARIEETDAEYVHIDIMDGQFVPNISFGADVVASMRKHS-KLVFDCHLMVVDPERYVEAFAQAGADIMTIHTES 94 (220)
T ss_dssp GGHHHHHHHHHHTTCCEEEEEEEBSSSSSCBCBCHHHHHHHHTTC-CSEEEEEEESSSGGGGHHHHHHHTCSEEEEEGGG
T ss_pred HHHHHHHHHHHHcCCCEEEEEeecCCCCCccccCHHHHHHHHHhC-CCCEEEEEeecCHHHHHHHHHHcCCCEEEEccCc
Confidence 45667888888999999888765454 111 167888888876 566665433 233 35788999999999442111
Q ss_pred cccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEE
Q psy1056 403 KKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMM 458 (590)
Q Consensus 403 ~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~ 458 (590)
. . . ..++.+.+.+.+..++.+=...|+.+..+++..++|.|.+
T Consensus 95 ~-~---------~---~~~~~~~~~~~g~~i~~~~~~~t~~e~~~~~~~~~d~vl~ 137 (220)
T 2fli_A 95 T-R---------H---IHGALQKIKAAGMKAGVVINPGTPATALEPLLDLVDQVLI 137 (220)
T ss_dssp C-S---------C---HHHHHHHHHHTTSEEEEEECTTSCGGGGGGGTTTCSEEEE
T ss_pred c-c---------c---HHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHhhCCEEEE
Confidence 1 1 1 2233344444466666643336788888888888999843
|
| >1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=90.84 E-value=3.1 Score=40.59 Aligned_cols=105 Identities=11% Similarity=0.133 Sum_probs=73.4
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCC---------CchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEc
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQ---------GNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMI 399 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~---------G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~ 399 (590)
+...+.++.+.++|++++-..... |.....+..+..+++++ ++|++. ++.+.+.+..+.+. +|++.+.
T Consensus 37 e~a~~~a~~l~~~Ga~~vk~~~fkprts~~~~~g~~~egl~~l~~~~~~~-Gl~~~t-e~~d~~~~~~l~~~-vd~~kIg 113 (262)
T 1zco_A 37 EQIMKVAEFLAEVGIKVLRGGAFKPRTSPYSFQGYGEKALRWMREAADEY-GLVTVT-EVMDTRHVELVAKY-SDILQIG 113 (262)
T ss_dssp HHHHHHHHHHHHTTCCEEECBSSCCCSSTTSCCCCTHHHHHHHHHHHHHH-TCEEEE-ECCCGGGHHHHHHH-CSEEEEC
T ss_pred HHHHHHHHHHHHcCCCEEEEEecccCCCcccccCccHHHHHHHHHHHHHc-CCcEEE-eeCCHHhHHHHHhh-CCEEEEC
Confidence 445667888899999988765421 22233355666666665 788876 99999999999999 9999773
Q ss_pred ccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCC-CHHHHHHHHH
Q psy1056 400 KFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQ-SVGHVMKALA 450 (590)
Q Consensus 400 ~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~-~~~di~kala 450 (590)
-.+.+. ...+++.+ +.+.||+.+-|.. |..++..|..
T Consensus 114 a~~~~n-------------~~ll~~~a-~~~kPV~lk~G~~~t~~e~~~Av~ 151 (262)
T 1zco_A 114 ARNSQN-------------FELLKEVG-KVENPVLLKRGMGNTIQELLYSAE 151 (262)
T ss_dssp GGGTTC-------------HHHHHHHT-TSSSCEEEECCTTCCHHHHHHHHH
T ss_pred cccccC-------------HHHHHHHH-hcCCcEEEecCCCCCHHHHHHHHH
Confidence 222222 12234333 4689999999997 9999998874
|
| >1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=90.77 E-value=0.57 Score=47.58 Aligned_cols=68 Identities=18% Similarity=0.164 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHcCCcEEEEecCC----------------Cch-----hhHHHHHHHHHHhCC-CceEE-eccccCcHHHH
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQ----------------GNS-----IYQIEMIKFIKKEYP-DMQVI-GGNVLFGYQPR 386 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~----------------G~~-----~~~l~~i~~i~~~~~-~vpvi-~g~v~s~~~a~ 386 (590)
+..+.++.+.++|+|.+.+.... |.. ...++.++.+++..+ ++||+ .|+|.+.++|.
T Consensus 226 ~~~~~a~~l~~~Gvd~i~vsn~~~~~~~~~~~~~~~~~gg~~g~~~~~~~~~~i~~i~~~~~~~ipVi~~GGI~~~~da~ 305 (336)
T 1f76_A 226 ELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLSLELNGRLPIIGVGGIDSVIAAR 305 (336)
T ss_dssp HHHHHHHHHHHTTCSEEEECCCBCCCTTSTTSTTTTCSSEEEEGGGHHHHHHHHHHHHHHHTTSSCEEEESSCCSHHHHH
T ss_pred HHHHHHHHHHHcCCcEEEEeCCcccccccccccccccCCCcCCchhHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHH
Confidence 45667888999999999886321 111 123577888888764 68988 68888999999
Q ss_pred HHHHCCCCEEE
Q psy1056 387 ATLLNFIYQIE 397 (590)
Q Consensus 387 ~l~~~Gvd~i~ 397 (590)
+++++|||+|-
T Consensus 306 ~~l~~GAd~V~ 316 (336)
T 1f76_A 306 EKIAAGASLVQ 316 (336)
T ss_dssp HHHHHTCSEEE
T ss_pred HHHHCCCCEEE
Confidence 99999999993
|
| >4dwd_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, EFI, enzyme function initiative, metal protein; HET: MSE; 1.50A {Paracoccus denitrificans} PDB: 3n4e_A* | Back alignment and structure |
|---|
Probab=90.76 E-value=2.8 Score=43.57 Aligned_cols=120 Identities=13% Similarity=-0.024 Sum_probs=81.6
Q ss_pred hhHHHHH-HHHHHcCCcEEEEecCCC------chhhHHHHHHHHHHhC-CCceEEec-cc-cCcHHH----HHHHHCCCC
Q psy1056 329 EADKNRL-KLLSQAGVDVVILDSSQG------NSIYQIEMIKFIKKEY-PDMQVIGG-NV-LFGYQP----RATLLNFIY 394 (590)
Q Consensus 329 ~~~~e~~-~~li~~gad~i~V~~~~G------~~~~~l~~i~~i~~~~-~~vpvi~g-~v-~s~~~a----~~l~~~Gvd 394 (590)
+...+.+ +..++.|...+-+..... +...-++.++.+++.+ +++++++. |. -+.++| +.|.+.|++
T Consensus 141 e~~~~~a~~~~~~~G~~~~KlKvG~~~~~~~~~~~~d~~~v~avR~a~g~~~~l~vDaN~~~~~~~A~~~~~~L~~~~i~ 220 (393)
T 4dwd_A 141 DEVVREVARRVEAEQPAAVKIRWDGDRTRCDVDIPGDIAKARAVRELLGPDAVIGFDANNGYSVGGAIRVGRALEDLGYS 220 (393)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEECCCCTTCCSCCHHHHHHHHHHHHHHHCTTCCEEEECTTCCCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHcCCCEEEEccCCCCcccccCHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhhCCC
Confidence 3445566 777888999998876432 3455678899999886 57888864 22 266665 456678999
Q ss_pred EEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 395 QIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 395 ~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
+| +- . +... .... .++..+..++||++++-+.+..|+.+++..|+|.+++-...
T Consensus 221 ~i----Eq--P---~~~~--d~~~---~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~d~v~~k~~~ 274 (393)
T 4dwd_A 221 WF----EE--P---VQHY--HVGA---MGEVAQRLDITVSAGEQTYTLQALKDLILSGVRMVQPDIVK 274 (393)
T ss_dssp EE----EC--C---SCTT--CHHH---HHHHHHHCSSEEEBCTTCCSHHHHHHHHHHTCCEECCCTTT
T ss_pred EE----EC--C---CCcc--cHHH---HHHHHhhCCCCEEecCCcCCHHHHHHHHHcCCCEEEeCccc
Confidence 88 21 1 1100 2222 33333345799999999999999999999999999776443
|
| >3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A* | Back alignment and structure |
|---|
Probab=90.56 E-value=0.76 Score=47.99 Aligned_cols=69 Identities=13% Similarity=0.187 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHcCCcEEEEecCC--------------Cc---h--hhHHHHHHHHHHhCC-CceEE-eccccCcHHHHHH
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQ--------------GN---S--IYQIEMIKFIKKEYP-DMQVI-GGNVLFGYQPRAT 388 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~--------------G~---~--~~~l~~i~~i~~~~~-~vpvi-~g~v~s~~~a~~l 388 (590)
+..+.++.+.++|+|.+++.... |. . ...++.+..+++..+ ++||| .|+|.|.++|.++
T Consensus 284 ~i~~iA~~a~~aGaDgIiv~Ntt~~r~dl~~~~~~~GGlSG~a~~p~al~~I~~v~~~v~~~iPIIg~GGI~s~eDa~e~ 363 (415)
T 3i65_A 284 QKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLDALEK 363 (415)
T ss_dssp HHHHHHHHHHHHTCSEEEECCCBSCCCCCGGGTTCCSEEEEGGGHHHHHHHHHHHHHHTTTCSCEEECSSCCSHHHHHHH
T ss_pred HHHHHHHHHHHcCCcEEEEeCCCcccccccccccccCCcCCccchHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHH
Confidence 46678889999999999876421 11 1 123578888888874 68988 6888999999999
Q ss_pred HHCCCCEEEE
Q psy1056 389 LLNFIYQIEM 398 (590)
Q Consensus 389 ~~~Gvd~i~v 398 (590)
+.+|||++-|
T Consensus 364 l~aGAd~VqI 373 (415)
T 3i65_A 364 IEAGASVCQL 373 (415)
T ss_dssp HHHTEEEEEE
T ss_pred HHcCCCEEEE
Confidence 9999999843
|
| >3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ... | Back alignment and structure |
|---|
Probab=90.54 E-value=0.74 Score=47.47 Aligned_cols=69 Identities=14% Similarity=0.189 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHcCCcEEEEecCC----------------Cch-----hhHHHHHHHHHHhCC-CceEE-eccccCcHHHH
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQ----------------GNS-----IYQIEMIKFIKKEYP-DMQVI-GGNVLFGYQPR 386 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~----------------G~~-----~~~l~~i~~i~~~~~-~vpvi-~g~v~s~~~a~ 386 (590)
+..+.++.+.++|+|.++++... |.+ ...++.+..+++..+ ++||| .|+|.|.++|.
T Consensus 235 ~~~~ia~~~~~aGadgi~v~ntt~~r~~~~~~~~~~~~gGlSG~~i~p~a~~~v~~i~~~v~~~ipvI~~GGI~s~~da~ 314 (367)
T 3zwt_A 235 DKEDIASVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQGRVPIIGVGGVSSGQDAL 314 (367)
T ss_dssp HHHHHHHHHHHHTCCEEEECCCBSCCCTTCCCTTTTSSSEEEEGGGHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcccccccccccccccCCcCCcccchhHHHHHHHHHHHcCCCceEEEECCCCCHHHHH
Confidence 45678888899999999876321 111 113578899999885 68988 68899999999
Q ss_pred HHHHCCCCEEEE
Q psy1056 387 ATLLNFIYQIEM 398 (590)
Q Consensus 387 ~l~~~Gvd~i~v 398 (590)
+++++|||+|-+
T Consensus 315 ~~l~~GAd~V~v 326 (367)
T 3zwt_A 315 EKIRAGASLVQL 326 (367)
T ss_dssp HHHHHTCSEEEE
T ss_pred HHHHcCCCEEEE
Confidence 999999999943
|
| >3t05_A Pyruvate kinase, PK; tetramer, glycolysis, transferase; 3.05A {Staphylococcus aureus subsp} PDB: 3t07_A* 3t0t_A* | Back alignment and structure |
|---|
Probab=90.44 E-value=15 Score=40.01 Aligned_cols=120 Identities=14% Similarity=0.129 Sum_probs=67.4
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHH---HHHCCCCEEEE-----cc
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRA---TLLNFIYQIEM-----IK 400 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~---l~~~Gvd~i~v-----~~ 400 (590)
+...+-+...++.++|++.+...+. ...+.+.-+.+.+.-.+.++++ -+-+++.... .+++ +|+|-| .+
T Consensus 193 ekD~~dl~f~~~~~vD~Ia~SFVr~-a~Dv~~~r~~l~~~~~~i~Iia-KIE~~eav~nldeIl~~-sDGImVARGDLgv 269 (606)
T 3t05_A 193 EKDAEDIRFGIKENVDFIAASFVRR-PSDVLEIREILEEQKANISVFP-KIENQEGIDNIEEILEV-SDGLMVARGDMGV 269 (606)
T ss_dssp HHHHHHHHHHHHTTCSEEEETTCCS-HHHHHHHHHHHHHTTCCCEEEE-CCCSHHHHHTHHHHHHH-CSCEEEEHHHHHH
T ss_pred hhHHHHHHHHHHcCCCEEEECCCCC-HHHHHHHHHHHHhcCCCCeEEE-EeCCHHHHHhHHHHHHh-CCEEEEccccccC
Confidence 3444556677889999998754332 2333333344444433566665 4555555433 3334 788866 22
Q ss_pred cccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCC---------C---HHHHHHHHHcCCCEEEEC
Q psy1056 401 FIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQ---------S---VGHVMKALALGASTAMMG 459 (590)
Q Consensus 401 ~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~---------~---~~di~kalalGA~~v~~g 459 (590)
+...+ . -+..-..+...|...+.|+|..--+. | ..|++.|..-|||+||+.
T Consensus 270 ei~~e-----~---vp~~Qk~ii~~~~~~gkpvi~ATQMLeSMi~~p~PTRAEvsDVanAv~dGaDavMLS 332 (606)
T 3t05_A 270 EIPPE-----K---VPMVQKDLIRQCNKLGKPVITATQMLDSMQRNPRATRAEASDVANAIYDGTDAVMLS 332 (606)
T ss_dssp HSCGG-----G---HHHHHHHHHHHHHHHTCCEEEESSSSGGGTTCSSCCHHHHHHHHHHHHHTCSEEEEC
T ss_pred cCCHH-----H---HHHHHHHHHHHHHHcCCCeEEehHHHHHhhcCCCccHHHHHHHHHHHHcCCCEEEec
Confidence 21111 1 11112233444555578999744332 2 258899999999999997
|
| >3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 1.75A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1o0y_A* 3r13_A* | Back alignment and structure |
|---|
Probab=90.43 E-value=2.1 Score=41.58 Aligned_cols=124 Identities=14% Similarity=0.009 Sum_probs=71.8
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEE--ecccc-------CcHHHHHHHHCCCCEEEEcc
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVI--GGNVL-------FGYQPRATLLNFIYQIEMIK 400 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi--~g~v~-------s~~~a~~l~~~Gvd~i~v~~ 400 (590)
+..+..+...+.|+..++|+.. ++...-+.++.. ++.+. ++.-. -..+++++++.|||-||+-+
T Consensus 60 ~I~~lc~eA~~~~~aaVCV~p~-----~V~~a~~~L~gs--~v~v~tVigFP~G~~~~~~Kv~Ea~~Ai~~GAdEIDmVi 132 (260)
T 3r12_A 60 DIKKLCLEARENRFHGVCVNPC-----YVKLAREELEGT--DVKVVTVVGFPLGANETRTKAHEAIFAVESGADEIDMVI 132 (260)
T ss_dssp HHHHHHHHHHHTTCSEEEECGG-----GHHHHHHHHTTS--CCEEEEEESTTTCCSCHHHHHHHHHHHHHHTCSEEEEEC
T ss_pred HHHHHHHHHHhcCCcEEEECHH-----HHHHHHHHhcCC--CCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEEe
Confidence 4445677777889999998432 122222223221 34333 22111 13477889999999999843
Q ss_pred cccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHH----HHcCCCEEEECccc
Q psy1056 401 FIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKA----LALGASTAMMGSLL 462 (590)
Q Consensus 401 ~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~ka----lalGA~~v~~g~~l 462 (590)
..+..++ ..|.....-+..+.+++...-+.+|..-|..+..++.+| ..+|||+|=-.+-|
T Consensus 133 Nig~lk~--g~~~~v~~eI~~v~~a~~~~~lKVIlEt~~Lt~eei~~A~~ia~eaGADfVKTSTGf 196 (260)
T 3r12_A 133 NVGMLKA--KEWEYVYEDIRSVVESVKGKVVKVIIETCYLDTEEKIAACVISKLAGAHFVKTSTGF 196 (260)
T ss_dssp CHHHHHT--TCHHHHHHHHHHHHHHTTTSEEEEECCGGGCCHHHHHHHHHHHHHTTCSEEECCCSS
T ss_pred ehhhhcc--ccHHHHHHHHHHHHHhcCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCcCEEEcCCCC
Confidence 3332100 122223334555666665334678888889999998874 45799999444433
|
| >3ugv_A Enolase; enzyme function initiative, EFI, lyase; 2.30A {Alpha proteobacterium BAL199} | Back alignment and structure |
|---|
Probab=90.36 E-value=3.6 Score=42.62 Aligned_cols=117 Identities=15% Similarity=0.045 Sum_probs=78.8
Q ss_pred hhHHHHHHHHHHc---CCcEEEEecCCCchhhHHHHHHHHHHhC-CCceEEec-c-ccCcHHHH----HHHHCCCCEEEE
Q psy1056 329 EADKNRLKLLSQA---GVDVVILDSSQGNSIYQIEMIKFIKKEY-PDMQVIGG-N-VLFGYQPR----ATLLNFIYQIEM 398 (590)
Q Consensus 329 ~~~~e~~~~li~~---gad~i~V~~~~G~~~~~l~~i~~i~~~~-~~vpvi~g-~-v~s~~~a~----~l~~~Gvd~i~v 398 (590)
+...+.++.+++. |...+-+.....+...-++.++.+++.+ |++++.+. | .-+.++|. .|.+.|+++|
T Consensus 173 e~~~~~a~~~~~~~~~G~~~iKlKvG~~~~~~d~~~v~avR~a~G~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~~i-- 250 (390)
T 3ugv_A 173 EVAAEAVELKAEGQGTGFKGLKLRMGRDDPAVDIETAEAVWDAVGRDTALMVDFNQGLDMAEAMHRTRQIDDLGLEWI-- 250 (390)
T ss_dssp HHHHHHHHHHHTTCTTCCSEEEEECCCSSHHHHHHHHHHHHHHHCTTSEEEEECTTCCCHHHHHHHHHHHTTSCCSEE--
T ss_pred HHHHHHHHHHHHhhhCCCcEEEEecCCCCHHHHHHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEE--
Confidence 3445667777888 9999988775545555678899999887 57888864 2 22666654 4445788888
Q ss_pred cccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcC-CCEEEEC
Q psy1056 399 IKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALG-ASTAMMG 459 (590)
Q Consensus 399 ~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalG-A~~v~~g 459 (590)
+- . +... ... ..++..+..++||.++.-+.+..|+.+++..| +|.+++-
T Consensus 251 --Eq--P---~~~~--d~~---~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~ik 300 (390)
T 3ugv_A 251 --EE--P---VVYD--NFD---GYAQLRHDLKTPLMIGENFYGPREMHQALQAGACDLVMPD 300 (390)
T ss_dssp --EC--C---SCTT--CHH---HHHHHHHHCSSCEEECTTCCSHHHHHHHHHTTCCSEECCB
T ss_pred --EC--C---CCcc--cHH---HHHHHHHhcCCCEEeCCCcCCHHHHHHHHHcCCCCEEEeC
Confidence 21 1 1100 222 23333344579999999999999999999987 5777543
|
| >3i4k_A Muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9450D, isomerase, PSI-2, protein structure initiative; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=90.24 E-value=5.6 Score=41.03 Aligned_cols=120 Identities=10% Similarity=0.034 Sum_probs=81.9
Q ss_pred hhHHHHHHHHHHc-CCcEEEEecCCCchhhHHHHHHHHHHhCC-CceEEec-cc-cCcHHH----HHHHHCCCCEEEEcc
Q psy1056 329 EADKNRLKLLSQA-GVDVVILDSSQGNSIYQIEMIKFIKKEYP-DMQVIGG-NV-LFGYQP----RATLLNFIYQIEMIK 400 (590)
Q Consensus 329 ~~~~e~~~~li~~-gad~i~V~~~~G~~~~~l~~i~~i~~~~~-~vpvi~g-~v-~s~~~a----~~l~~~Gvd~i~v~~ 400 (590)
+...+.+...++. |...+-+.....+...-++.++.+++.++ ++++.+. |. -+.++| +.|.+.|+++|
T Consensus 150 ~~~~~~a~~~~~~~G~~~~K~Kvg~~~~~~d~~~v~avR~a~g~~~~l~vDan~~~~~~~A~~~~~~l~~~~i~~i---- 225 (383)
T 3i4k_A 150 DVAVAEIEERIEEFGNRSFKLKMGAGDPAEDTRRVAELAREVGDRVSLRIDINARWDRRTALHYLPILAEAGVELF---- 225 (383)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEECCSSCHHHHHHHHHHHHHTTTTTSEEEEECTTCSCHHHHHHHHHHHHHTTCCEE----
T ss_pred HHHHHHHHHHHHhcCCcEEEEeeCCCCHHHHHHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCEE----
Confidence 3445566666776 99999887755455566888999999985 5788764 22 255655 45666899988
Q ss_pred cccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcC-CCEEEECccc
Q psy1056 401 FIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALG-ASTAMMGSLL 462 (590)
Q Consensus 401 ~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalG-A~~v~~g~~l 462 (590)
+- . +... ....+..+++ ..++||++++-+.+..|+.+++..| +|.|++-...
T Consensus 226 Eq--P---~~~~--d~~~~~~l~~---~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~~k~~~ 278 (383)
T 3i4k_A 226 EQ--P---TPAD--DLETLREITR---RTNVSVMADESVWTPAEALAVVKAQAADVIALKTTK 278 (383)
T ss_dssp ES--C---SCTT--CHHHHHHHHH---HHCCEEEESTTCSSHHHHHHHHHHTCCSEEEECTTT
T ss_pred EC--C---CChh--hHHHHHHHHh---hCCCCEEecCccCCHHHHHHHHHcCCCCEEEEcccc
Confidence 21 1 1100 2233334443 3469999999999999999999988 7888887544
|
| >2qde_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-II, NYSGXRC, enolase, structural genomics, protei structure initiative, PSI-2; 1.93A {Azoarcus SP} | Back alignment and structure |
|---|
Probab=90.22 E-value=2.9 Score=43.35 Aligned_cols=115 Identities=16% Similarity=0.126 Sum_probs=77.9
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhC-CCceEEecc--ccCcHHHH----HHHHCCCCEEEEcccc
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEY-PDMQVIGGN--VLFGYQPR----ATLLNFIYQIEMIKFI 402 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~-~~vpvi~g~--v~s~~~a~----~l~~~Gvd~i~v~~~~ 402 (590)
...+.+..+.+.|.+.+-+.... +....++.++.+++.+ +++++.+.- .-+.++|. .|.+.|+++| +-
T Consensus 148 ~~~~~a~~~~~~Gf~~vKik~g~-~~~~~~e~v~avR~a~g~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~i----Eq 222 (397)
T 2qde_A 148 AVAEEALAVLREGFHFVKLKAGG-PLKADIAMVAEVRRAVGDDVDLFIDINGAWTYDQALTTIRALEKYNLSKI----EQ 222 (397)
T ss_dssp HHHHHHHHHHHHTCSCEEEECCS-CHHHHHHHHHHHHHHHCTTSCEEEECTTCCCHHHHHHHHHHHGGGCCSCE----EC
T ss_pred HHHHHHHHHHHhhhhheeecccC-CHHHHHHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHHHHhCCCCEE----EC
Confidence 44566777888899999887653 3345578889999886 578887642 22666654 4555788877 21
Q ss_pred cccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcC-CCEEEEC
Q psy1056 403 KKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALG-ASTAMMG 459 (590)
Q Consensus 403 ~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalG-A~~v~~g 459 (590)
- + ....+...++..+..++||++++.+.+..++.+++..| +|.+++-
T Consensus 223 P-----~-----~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik 270 (397)
T 2qde_A 223 P-----L-----PAWDLDGMARLRGKVATPIYADESAQELHDLLAIINKGAADGLMIK 270 (397)
T ss_dssp C-----S-----CTTCHHHHHHHHTTCSSCEEESTTCCSHHHHHHHHHHTCCSEEEEC
T ss_pred C-----C-----ChhhHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHcCCCCEEEEe
Confidence 1 1 11112233444444579999999999999999999886 7888874
|
| >1n7k_A Deoxyribose-phosphate aldolase; A.pernix, tetramer, alpha-beta TIM barrel, riken S genomics/proteomics initiative, RSGI, structural genomics,; 2.00A {Aeropyrum pernix} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=90.19 E-value=2.7 Score=40.23 Aligned_cols=115 Identities=14% Similarity=0.104 Sum_probs=69.0
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEE--ecc----cc---CcHHHHHHHHCCCCEEEEc
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVI--GGN----VL---FGYQPRATLLNFIYQIEMI 399 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi--~g~----v~---s~~~a~~l~~~Gvd~i~v~ 399 (590)
.+..+..+...+.|++.++++.. ++ ...+.++.. +++.+. ++. -. -..+++.+++.|||.||+-
T Consensus 36 ~~i~~l~~~a~~~~~~aVcv~p~-----~v-~a~~~l~~~-~~v~v~tvigFP~G~~~~~~k~~e~~~Av~~GAdEID~v 108 (234)
T 1n7k_A 36 EDVRNLVREASDYGFRCAVLTPV-----YT-VKISGLAEK-LGVKLCSVIGFPLGQAPLEVKLVEAQTVLEAGATELDVV 108 (234)
T ss_dssp HHHHHHHHHHHHHTCSEEEECHH-----HH-HHHHHHHHH-HTCCEEEEESTTTCCSCHHHHHHHHHHHHHHTCCEEEEC
T ss_pred HHHHHHHHHHHHhCCCEEEEchH-----Hh-eeehHhCCC-CCceEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCEEEEe
Confidence 34556777888889999987432 22 223334332 123332 211 11 1267788999999999884
Q ss_pred ccccccCCCccccccchhHHHHHHHHHhcCCCcE--EecCCCCCHHHHHH----HHHcCCCEE
Q psy1056 400 KFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPV--IADGGVQSVGHVMK----ALALGASTA 456 (590)
Q Consensus 400 ~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~i--ia~GGi~~~~di~k----alalGA~~v 456 (590)
+..+.. .. ....-+..+.+.|...++|+ |..-+..+..++.+ |..+|||+|
T Consensus 109 inig~~---~~---~v~~ei~~v~~a~~~~g~~lKvIlEt~~L~~e~i~~a~ria~eaGADfV 165 (234)
T 1n7k_A 109 PHLSLG---PE---AVYREVSGIVKLAKSYGAVVKVILEAPLWDDKTLSLLVDSSRRAGADIV 165 (234)
T ss_dssp CCGGGC---HH---HHHHHHHHHHHHHHHTTCEEEEECCGGGSCHHHHHHHHHHHHHTTCSEE
T ss_pred ccchHH---HH---HHHHHHHHHHHHHhhcCCeEEEEEeccCCCHHHHHHHHHHHHHhCCCEE
Confidence 433322 11 12233455666666556675 88778888888876 456799999
|
| >2yyu_A Orotidine 5'-phosphate decarboxylase; TIM barrel, structural genomics, NPPSFA, national project on structural and functional analyses; HET: C5P; 2.20A {Geobacillus kaustophilus} PDB: 2yyt_A* | Back alignment and structure |
|---|
Probab=90.15 E-value=0.52 Score=45.71 Aligned_cols=128 Identities=17% Similarity=0.142 Sum_probs=69.1
Q ss_pred HHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHh--CC-Cce-EEeccccCcHHHHHH-HHCCCC--EEEEcccccccC
Q psy1056 334 RLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKE--YP-DMQ-VIGGNVLFGYQPRAT-LLNFIY--QIEMIKFIKKEY 406 (590)
Q Consensus 334 ~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~--~~-~vp-vi~g~v~s~~~a~~l-~~~Gvd--~i~v~~~~~~~~ 406 (590)
.++.+.+.|+|.+.++..-|.. .+...++.+++. +. ..+ +++=+..|......+ .+.|++ ..+.-...++..
T Consensus 74 ~~~~~~~~Gad~vTvH~~~g~~-~l~~~~~~~~~~~~~G~~~~~~lav~~~Ts~~~~~l~~~~~~~~~~~d~Vl~ma~~~ 152 (246)
T 2yyu_A 74 AMKGLARVGADLVNVHAAGGRR-MMEAAIEGLDAGTPSGRMRPRCIAVTQLTSTDERMLHEELWISRPLVETVAHYAALA 152 (246)
T ss_dssp HHHHHHHTTCSEEEEEGGGCHH-HHHHHHHHHHHHSCSSSCCCEEEEESSCTTCCHHHHHHTSCCCSCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCEEEEECCCCHH-HHHHHHHHHHhhcccCCcCCCEEEEEeCCCCCHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 5677889999999998866532 233556666652 31 234 443344444344455 555431 111000110000
Q ss_pred CCcccccc--chhHHHHHHHHHhcCCCcEEecCCCCCH-H---------HHHHHHHcCCCEEEECccccC
Q psy1056 407 PDMQVIGR--NGTAVYRVAEYASRRGVPVIADGGVQSV-G---------HVMKALALGASTAMMGSLLAG 464 (590)
Q Consensus 407 ~~~~~~g~--~~~~l~~~~~~~~~~~v~iia~GGi~~~-~---------di~kalalGA~~v~~g~~l~~ 464 (590)
.++.+.|+ ....+..+++.+. ..+++.+|||+-. . .+..|+..|||.+++||.+..
T Consensus 153 ~~~G~~g~V~~~~ei~~lr~~~~--~~~i~V~gGI~~~g~~~~dq~rv~t~~~a~~aGad~iVvGr~I~~ 220 (246)
T 2yyu_A 153 KESGLDGVVCSANEAAFIKERCG--ASFLAVTPGIRFADDAAHDQVRVVTPRKARALGSDYIVIGRSLTR 220 (246)
T ss_dssp HHHTCCEEECCHHHHHHHHHHHC--TTSEEEECCCCCCC-------CCCCHHHHHHHTCSEEEECHHHHT
T ss_pred HHhCCCEEEeCHHHHHHHHHhcC--CCCEEEeCCcCCCCCCcccccccCCHHHHHHcCCCEEEECHhhcC
Confidence 00212233 2222445555543 2458999999843 2 366778889999999998854
|
| >3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A* | Back alignment and structure |
|---|
Probab=90.15 E-value=1 Score=45.85 Aligned_cols=69 Identities=23% Similarity=0.268 Sum_probs=52.8
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCC--C----chh-hHHHHHHHHHHhCCCceEEe-ccccCcHHHHHHHHCC-CCEEEE
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQ--G----NSI-YQIEMIKFIKKEYPDMQVIG-GNVLFGYQPRATLLNF-IYQIEM 398 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~--G----~~~-~~l~~i~~i~~~~~~vpvi~-g~v~s~~~a~~l~~~G-vd~i~v 398 (590)
++..+.++.+.++|++.+++.... . ... ...+.++.+++.+ ++||++ |.+.++++|.++++.| +|.|-+
T Consensus 229 ~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~-~iPVi~~GgI~s~e~a~~~L~~G~aD~V~i 306 (340)
T 3gr7_A 229 KDYVPYAKRMKEQGVDLVDVSSGAIVPARMNVYPGYQVPFAELIRREA-DIPTGAVGLITSGWQAEEILQNGRADLVFL 306 (340)
T ss_dssp GGHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHT-TCCEEEESSCCCHHHHHHHHHTTSCSEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCccCCCCCCCccccHHHHHHHHHHc-CCcEEeeCCCCCHHHHHHHHHCCCeeEEEe
Confidence 456778999999999999987421 0 011 2367788899888 789885 6677999999999999 999833
|
| >3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} SCOP: c.1.2.3 PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ... | Back alignment and structure |
|---|
Probab=90.06 E-value=2.5 Score=40.36 Aligned_cols=186 Identities=12% Similarity=0.070 Sum_probs=91.8
Q ss_pred hhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCCCC--CCcc-cCCceEEeEeecc
Q psy1056 251 EKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPD--SSKD-ENNQLIVGAAIGT 327 (590)
Q Consensus 251 ~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~~~--~~~d-~~~~l~v~a~i~~ 327 (590)
-++|...++++..-.-.++++++++..+.+-. +..+. +|+ .++....... .+++ ....++...-+..
T Consensus 6 ~~~m~~~~~lilAlD~~~~~~a~~~v~~~~~~-v~~~K-----vg~----~lf~~~G~~~v~~l~~~~g~~v~lD~Kl~D 75 (228)
T 3m47_A 6 VDVMDVMNRLILAMDLMNRDDALRVTGEVREY-IDTVK-----IGY----PLVLSEGMDIIAEFRKRFGCRIIADFKVAD 75 (228)
T ss_dssp TTSCCCGGGEEEECCCCSHHHHHHHHHTTTTT-CSEEE-----EEH----HHHHHHCTHHHHHHHHHHCCEEEEEEEECS
T ss_pred HHHhhcCCCeEEEeCCCCHHHHHHHHHHcCCc-ccEEE-----EcH----HHHHhcCHHHHHHHHhcCCCeEEEEEeecc
Confidence 35555312455555557788888888765421 11111 011 1111110000 0111 2233444554442
Q ss_pred chh-HHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccC-----------cHHHHHHHHCCCCE
Q psy1056 328 REA-DKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLF-----------GYQPRATLLNFIYQ 395 (590)
Q Consensus 328 ~~~-~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s-----------~~~a~~l~~~Gvd~ 395 (590)
-+. ....++.+.+.|+|.+.++..-|. ..+...++.+++.-+.+.++. ...+ ..-++.+.++|+++
T Consensus 76 ipnTv~~~~~~~~~~gad~vtvh~~~G~-~~l~~~~~~~~~~g~~v~vLt-~~s~~~~~~~~~~~~~~~a~~a~~~G~~G 153 (228)
T 3m47_A 76 IPETNEKICRATFKAGADAIIVHGFPGA-DSVRACLNVAEEMGREVFLLT-EMSHPGAEMFIQGAADEIARMGVDLGVKN 153 (228)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEESTTCH-HHHHHHHHHHHHHTCEEEEEC-CCCSGGGGTTHHHHHHHHHHHHHHTTCCE
T ss_pred cHhHHHHHHHHHHhCCCCEEEEeccCCH-HHHHHHHHHHHhcCCCeEEEE-eCCCccHHHHHHHHHHHHHHHHHHhCCcE
Confidence 222 334677788999999999877663 223344455554432333321 1111 12345666799998
Q ss_pred EEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCH-HHHHHHHHcCCCEEEECccccC
Q psy1056 396 IEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSV-GHVMKALALGASTAMMGSLLAG 464 (590)
Q Consensus 396 i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~-~di~kalalGA~~v~~g~~l~~ 464 (590)
+ +|.... +..+..+++.+.. +.+ |.++||+-. .+. .++..|||.+++|+++..
T Consensus 154 v---V~~at~----------~~e~~~ir~~~~~-~~~-iv~PGI~~~g~~p-~~~~aGad~iVvGr~I~~ 207 (228)
T 3m47_A 154 Y---VGPSTR----------PERLSRLREIIGQ-DSF-LISPGVGAQGGDP-GETLRFADAIIVGRSIYL 207 (228)
T ss_dssp E---ECCSSC----------HHHHHHHHHHHCS-SSE-EEECC----------CGGGTCSEEEECHHHHT
T ss_pred E---EECCCC----------hHHHHHHHHhcCC-CCE-EEecCcCcCCCCH-hHHHcCCCEEEECHHHhC
Confidence 8 333211 2234455555432 244 467788643 356 888999999999998853
|
| >1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=90.03 E-value=1.6 Score=41.55 Aligned_cols=119 Identities=9% Similarity=-0.031 Sum_probs=72.5
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCc----hhhHHHHHHHHHHhCCCceEEecccc-Cc-HHHHHHHHCCCCEEEEccc-
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQGN----SIYQIEMIKFIKKEYPDMQVIGGNVL-FG-YQPRATLLNFIYQIEMIKF- 401 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G~----~~~~l~~i~~i~~~~~~vpvi~g~v~-s~-~~a~~l~~~Gvd~i~v~~~- 401 (590)
....+.++.+.+.|++.++++...|. .....+.++.+++.+ +.|+.+.-.. ++ +.++.+.++|+|+|-+...
T Consensus 23 ~~~~~~i~~~~~~G~d~i~l~~~dg~f~~~~~~~~~~i~~l~~~~-~~~~~v~l~vnd~~~~v~~~~~~Gad~v~vh~~~ 101 (230)
T 1rpx_A 23 SKLGEQVKAIEQAGCDWIHVDVMDGRFVPNITIGPLVVDSLRPIT-DLPLDVHLMIVEPDQRVPDFIKAGADIVSVHCEQ 101 (230)
T ss_dssp GGHHHHHHHHHHTTCCCEEEEEEBSSSSSCBCCCHHHHHHHGGGC-CSCEEEEEESSSHHHHHHHHHHTTCSEEEEECST
T ss_pred HHHHHHHHHHHHCCCCEEEEeeccCCcccccccCHHHHHHHHhcc-CCcEEEEEEecCHHHHHHHHHHcCCCEEEEEecC
Confidence 35567888899999999998743221 112257788888776 4454433222 33 4688889999999943222
Q ss_pred -ccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcc
Q psy1056 402 -IKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSL 461 (590)
Q Consensus 402 -~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~ 461 (590)
.. . . ..++.+.+.+.++.++.+---.|+.+..+++..|+|+|.+.+.
T Consensus 102 ~~~-~---------~---~~~~~~~~~~~g~~ig~~~~p~t~~e~~~~~~~~~d~vl~~~~ 149 (230)
T 1rpx_A 102 SST-I---------H---LHRTINQIKSLGAKAGVVLNPGTPLTAIEYVLDAVDLVLIMSV 149 (230)
T ss_dssp TTC-S---------C---HHHHHHHHHHTTSEEEEEECTTCCGGGGTTTTTTCSEEEEESS
T ss_pred ccc-h---------h---HHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCEEEEEEE
Confidence 11 1 1 1233444444466666543234777888888889999954443
|
| >3tj4_A Mandelate racemase; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.50A {Agrobacterium tumefaciens} PDB: 4h19_A* | Back alignment and structure |
|---|
Probab=90.02 E-value=4.3 Score=41.71 Aligned_cols=116 Identities=9% Similarity=-0.011 Sum_probs=77.9
Q ss_pred hHHHHHHHHHHc-CCcEEEEecCCCchhhHHHHHHHHHHhC-CCceEEec-c-ccCcHHHHHHH----HCCCCEEEEccc
Q psy1056 330 ADKNRLKLLSQA-GVDVVILDSSQGNSIYQIEMIKFIKKEY-PDMQVIGG-N-VLFGYQPRATL----LNFIYQIEMIKF 401 (590)
Q Consensus 330 ~~~e~~~~li~~-gad~i~V~~~~G~~~~~l~~i~~i~~~~-~~vpvi~g-~-v~s~~~a~~l~----~~Gvd~i~v~~~ 401 (590)
...+.+...++. |...+-+.....+...-++.++.+++.+ |+.++.+. | .-+.++|.++. +.|+++| +
T Consensus 154 ~~~~~a~~~~~~~G~~~~K~Kvg~~~~~~d~~~v~avR~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~i----E 229 (372)
T 3tj4_A 154 DLLAGSARAVEEDGFTRLKIKVGHDDPNIDIARLTAVRERVDSAVRIAIDGNGKWDLPTCQRFCAAAKDLDIYWF----E 229 (372)
T ss_dssp HHHHHHHHHHHTTCCCEEEEECCCSSHHHHHHHHHHHHHHSCTTCEEEEECTTCCCHHHHHHHHHHTTTSCEEEE----E
T ss_pred HHHHHHHHHHHccCCCEEEEcCCCCCHHHHHHHHHHHHHHcCCCCcEEeeCCCCCCHHHHHHHHHHHhhcCCCEE----E
Confidence 445667778888 9999988775444555688899999988 57888864 2 22667665443 4566666 2
Q ss_pred ccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcC-CCEEEEC
Q psy1056 402 IKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALG-ASTAMMG 459 (590)
Q Consensus 402 ~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalG-A~~v~~g 459 (590)
- . +... ... ..++.....++||++++-+.+..|+.+++..| +|.+++-
T Consensus 230 q--P---~~~~--d~~---~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~~k 278 (372)
T 3tj4_A 230 E--P---LWYD--DVT---SHARLARNTSIPIALGEQLYTVDAFRSFIDAGAVAYVQPD 278 (372)
T ss_dssp S--C---SCTT--CHH---HHHHHHHHCSSCEEECTTCCSHHHHHHHHHTTCCSEECCC
T ss_pred C--C---CCch--hHH---HHHHHHhhcCCCEEeCCCccCHHHHHHHHHcCCCCEEEeC
Confidence 1 1 1000 222 23333344579999999999999999999987 5777554
|
| >3dg3_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding; 1.60A {Mycobacterium smegmatis} PDB: 3dg6_A* 3dg7_A* | Back alignment and structure |
|---|
Probab=90.02 E-value=5.3 Score=40.92 Aligned_cols=117 Identities=9% Similarity=0.063 Sum_probs=77.2
Q ss_pred hhHHHHHHHHHHc-CCcEEEEecCCCchhhHHHHHHHHHHhC-CCceEEec-c-ccCcHHHHHH----HHCCCCEEEEcc
Q psy1056 329 EADKNRLKLLSQA-GVDVVILDSSQGNSIYQIEMIKFIKKEY-PDMQVIGG-N-VLFGYQPRAT----LLNFIYQIEMIK 400 (590)
Q Consensus 329 ~~~~e~~~~li~~-gad~i~V~~~~G~~~~~l~~i~~i~~~~-~~vpvi~g-~-v~s~~~a~~l----~~~Gvd~i~v~~ 400 (590)
+...+.++.+++. |...+-+.........-++.++.+++.+ |+.++.+. | .-+.++|.++ .+.|+++|
T Consensus 141 ~~~~~~a~~~~~~~G~~~~K~K~g~~~~~~d~~~v~avR~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~i---- 216 (367)
T 3dg3_A 141 VKMVAEAERIRETYGINTFKVKVGRRPVQLDTAVVRALRERFGDAIELYVDGNRGWSAAESLRAMREMADLDLLFA---- 216 (367)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEECCCSSTHHHHHHHHHHHHHHGGGSEEEEECTTCSCHHHHHHHHHHTTTSCCSCE----
T ss_pred HHHHHHHHHHHHhcCccEEEEeeCCChhhhHHHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHHHhCCCEE----
Confidence 4455677778888 9999888764322224577888899887 57788763 2 2266666544 44788877
Q ss_pred cccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcC-CCEEEEC
Q psy1056 401 FIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALG-ASTAMMG 459 (590)
Q Consensus 401 ~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalG-A~~v~~g 459 (590)
+- . +... ... ..++.....++||++++.+.+..|+.+++..| +|.+++-
T Consensus 217 Eq--P---~~~~--d~~---~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~~k 266 (367)
T 3dg3_A 217 EE--L---CPAD--DVL---SRRRLVGQLDMPFIADESVPTPADVTREVLGGSATAISIK 266 (367)
T ss_dssp ES--C---SCTT--SHH---HHHHHHHHCSSCEEECTTCSSHHHHHHHHHHTSCSEEEEC
T ss_pred EC--C---CCcc--cHH---HHHHHHHhCCCCEEecCCcCCHHHHHHHHHcCCCCEEEee
Confidence 21 1 1100 222 23333334579999999999999999999988 6888664
|
| >1eix_A Orotidine 5'-monophosphate decarboxylase; alpha-beta-barrel, protein-inhibitor complex, homodimer, lyase; HET: BMQ; 2.50A {Escherichia coli} SCOP: c.1.2.3 PDB: 1jjk_A* 1l2u_A | Back alignment and structure |
|---|
Probab=90.00 E-value=0.75 Score=44.57 Aligned_cols=144 Identities=12% Similarity=0.086 Sum_probs=73.1
Q ss_pred ceEEeEeeccchhH-HHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCce-EEeccccCcHHHHHHHHCCCC-
Q psy1056 318 QLIVGAAIGTREAD-KNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQ-VIGGNVLFGYQPRATLLNFIY- 394 (590)
Q Consensus 318 ~l~v~a~i~~~~~~-~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vp-vi~g~v~s~~~a~~l~~~Gvd- 394 (590)
.+++..-+...+.. ...++.+.+.|+|.+.++..-|.. .+...++.+++.-...+ ++.=.+.|.-....+.+.|++
T Consensus 67 ~v~lD~kl~Dip~t~~~~i~~~~~~Gad~vTvH~~~g~~-~l~~~~~~~~~~G~~~~~~l~v~~~ts~~~~~l~~~~~~~ 145 (245)
T 1eix_A 67 DIFLDLKFHDIPNTAAHAVAAAADLGVWMVNVHASGGAR-MMTAAREALVPFGKDAPLLIAVTVLTSMEASDLVDLGMTL 145 (245)
T ss_dssp CEEEEEEECSCHHHHHHHHHHHHHHTCSEEEEBGGGCHH-HHHHHHHTTGGGGGGCCEEEEECSCTTCCHHHHHTTTCCS
T ss_pred cEEEEeeccccHHHHHHHHHHHHhCCCCEEEEeccCCHH-HHHHHHHHHHHcCCCCCcEEEEEecCCCCHHHHHHhccCC
Confidence 34444444422222 235677888999999998765522 12334444443310023 332233333334445444431
Q ss_pred -EEEEcccccccCCCcccccc--chhHHHHHHHHHhcCCCcEEecCCCCCHH----------HHHHHHHcCCCEEEECcc
Q psy1056 395 -QIEMIKFIKKEYPDMQVIGR--NGTAVYRVAEYASRRGVPVIADGGVQSVG----------HVMKALALGASTAMMGSL 461 (590)
Q Consensus 395 -~i~v~~~~~~~~~~~~~~g~--~~~~l~~~~~~~~~~~v~iia~GGi~~~~----------di~kalalGA~~v~~g~~ 461 (590)
..+.-...++...++.+.|. ....+..+++.+. +.+++.+|||+-.+ .+.+|+..|||.+++||.
T Consensus 146 ~~~d~Vl~ma~~~~~~G~~g~V~~~~ei~~lr~~~~--~~~i~v~gGI~~~g~~~~dq~rv~t~~~a~~aGad~iVvGr~ 223 (245)
T 1eix_A 146 SPADYAERLAALTQKCGLDGVVCSAQEAVRFKQVFG--QEFKLVTPGIRPQGSEAGDQRRIMTPEQALSAGVDYMVIGRP 223 (245)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEECCGGGHHHHHHHHC--SSSEEEECCBCCTTCCCTTCCSCBCHHHHHHTTCSEEEECHH
T ss_pred CHHHHHHHHHHHHHHcCCCeEEeCHHHHHHHHHhcC--CCCEEEECCcCCCCCCccchhccCCHHHHHHcCCCEEEECHH
Confidence 11100011000000112222 2222556666653 35899999998532 367788899999999998
Q ss_pred ccC
Q psy1056 462 LAG 464 (590)
Q Consensus 462 l~~ 464 (590)
+..
T Consensus 224 I~~ 226 (245)
T 1eix_A 224 VTQ 226 (245)
T ss_dssp HHT
T ss_pred HcC
Confidence 854
|
| >3toy_A Mandelate racemase/muconate lactonizing enzyme FA protein; enolase, magnesium binding site, lyase; HET: P4C; 1.80A {Bradyrhizobium SP} PDB: 3tte_A* | Back alignment and structure |
|---|
Probab=89.97 E-value=3.2 Score=42.89 Aligned_cols=118 Identities=18% Similarity=0.117 Sum_probs=80.0
Q ss_pred hhHHHHHHHHHHc-CCcEEEEecCCCchhhHHHHHHHHHHhC-CCceEEec-c-ccCcHHHH----HHHHCCCCEEEEcc
Q psy1056 329 EADKNRLKLLSQA-GVDVVILDSSQGNSIYQIEMIKFIKKEY-PDMQVIGG-N-VLFGYQPR----ATLLNFIYQIEMIK 400 (590)
Q Consensus 329 ~~~~e~~~~li~~-gad~i~V~~~~G~~~~~l~~i~~i~~~~-~~vpvi~g-~-v~s~~~a~----~l~~~Gvd~i~v~~ 400 (590)
+...+.++.+++. |...+-+.....+...-++.++.+++.+ |++++++. | .-+.++|. .|.+.|+++|
T Consensus 169 e~~~~~a~~~~~~~G~~~~KlKvG~~~~~~d~~~v~avR~a~G~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~~i---- 244 (383)
T 3toy_A 169 RDDERTLRTACDEHGFRAIKSKGGHGDLATDEAMIKGLRALLGPDIALMLDFNQSLDPAEATRRIARLADYDLTWI---- 244 (383)
T ss_dssp HHHHHHHHHHHHTSCCCEEEEECCSSCHHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHGGGCCSEE----
T ss_pred HHHHHHHHHHHHccCCcEEEEecCCCCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCCHHHHHHHHHHHHhhCCCEE----
Confidence 4455677788888 9999988775544555678899999887 67888863 2 22666654 4555788888
Q ss_pred cccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcC-CCEEEECc
Q psy1056 401 FIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALG-ASTAMMGS 460 (590)
Q Consensus 401 ~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalG-A~~v~~g~ 460 (590)
+- . +..+ ... ..++..+..++||.++.-+.+..|+.+++..| +|.+++-.
T Consensus 245 Ee--P---~~~~--d~~---~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~ik~ 295 (383)
T 3toy_A 245 EE--P---VPQE--NLS---GHAAVRERSEIPIQAGENWWFPRGFAEAIAAGASDFIMPDL 295 (383)
T ss_dssp EC--C---SCTT--CHH---HHHHHHHHCSSCEEECTTCCHHHHHHHHHHHTCCSEECCCT
T ss_pred EC--C---CCcc--hHH---HHHHHHhhcCCCEEeCCCcCCHHHHHHHHHcCCCCEEEeCc
Confidence 21 1 1100 222 23333344579999999999999999999988 57775553
|
| >1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=89.82 E-value=0.6 Score=44.64 Aligned_cols=65 Identities=17% Similarity=0.166 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCchh--hHHHHHHHHHHhC-CCceEE-eccccCcHHHHHHHHCCCCEE
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNSI--YQIEMIKFIKKEY-PDMQVI-GGNVLFGYQPRATLLNFIYQI 396 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~~--~~l~~i~~i~~~~-~~vpvi-~g~v~s~~~a~~l~~~Gvd~i 396 (590)
...+.++.+.++|+|++.+++ |... ...+.++.+++.. +++||+ .|++.|.++|.+++++|+|.|
T Consensus 133 ~~~~~a~~a~eaGad~I~tst--g~~~gga~~~~i~~v~~~v~~~ipVia~GGI~t~~da~~~l~aGA~~i 201 (225)
T 1mzh_A 133 EIKKAVEICIEAGADFIKTST--GFAPRGTTLEEVRLIKSSAKGRIKVKASGGIRDLETAISMIEAGADRI 201 (225)
T ss_dssp HHHHHHHHHHHHTCSEEECCC--SCSSSCCCHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHHHHhCCCEEEECC--CCCCCCCCHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHhCchHH
Confidence 355678888899999995544 2211 1345666666654 268888 688889999999999999976
|
| >3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472} | Back alignment and structure |
|---|
Probab=89.79 E-value=5.7 Score=40.33 Aligned_cols=81 Identities=14% Similarity=0.028 Sum_probs=57.3
Q ss_pred HHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEE-cccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCC
Q psy1056 360 EMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEM-IKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGG 438 (590)
Q Consensus 360 ~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v-~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GG 438 (590)
..+...++.. +++++. ++.+.+.+..|.+.|+|++.| |-+.+. +..++..+ +.+.|||.+-|
T Consensus 81 ~~L~~~~~~~-Gi~~~s-t~fD~~svd~l~~~~v~~~KI~S~~~~N--------------~pLL~~va-~~gKPviLstG 143 (350)
T 3g8r_A 81 QKLVAEMKAN-GFKAIC-TPFDEESVDLIEAHGIEIIKIASCSFTD--------------WPLLERIA-RSDKPVVASTA 143 (350)
T ss_dssp HHHHHHHHHT-TCEEEE-EECSHHHHHHHHHTTCCEEEECSSSTTC--------------HHHHHHHH-TSCSCEEEECT
T ss_pred HHHHHHHHHc-CCcEEe-ccCCHHHHHHHHHcCCCEEEECcccccC--------------HHHHHHHH-hhCCcEEEECC
Confidence 3444455555 677655 899999999999999999977 322221 22344333 56899999999
Q ss_pred CCCHHHHHHHHH----cCCCEEE
Q psy1056 439 VQSVGHVMKALA----LGASTAM 457 (590)
Q Consensus 439 i~~~~di~kala----lGA~~v~ 457 (590)
+.|-.++..|.. .|.+.+.
T Consensus 144 mstl~Ei~~Ave~i~~~g~~viL 166 (350)
T 3g8r_A 144 GARREDIDKVVSFMLHRGKDLTI 166 (350)
T ss_dssp TCCHHHHHHHHHHHHTTTCCEEE
T ss_pred CCCHHHHHHHHHHHHHcCCCEEE
Confidence 999999988765 3666554
|
| >3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A* | Back alignment and structure |
|---|
Probab=89.71 E-value=0.85 Score=43.80 Aligned_cols=114 Identities=12% Similarity=-0.014 Sum_probs=71.8
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCch----hhHHHHHHHHHHhCCCceEEecc-ccCcH-HHHHHHHCCCCEEEEcccc-
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNS----IYQIEMIKFIKKEYPDMQVIGGN-VLFGY-QPRATLLNFIYQIEMIKFI- 402 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~----~~~l~~i~~i~~~~~~vpvi~g~-v~s~~-~a~~l~~~Gvd~i~v~~~~- 402 (590)
.+.+.++.+ +.|++.+++|.-.|+. ..-...++.+++.. +.|+-+.= +.+++ -.+.+.++|||+|-+-.+.
T Consensus 14 ~l~~~i~~~-~~gad~lHvDvmDG~fvpn~t~G~~~v~~lr~~~-~~~~dvhLmv~dp~~~i~~~~~aGAd~itvh~Ea~ 91 (231)
T 3ctl_A 14 KFKEQIEFI-DSHADYFHIDIMDGHFVPNLTLSPFFVSQVKKLA-TKPLDCHLMVTRPQDYIAQLARAGADFITLHPETI 91 (231)
T ss_dssp GHHHHHHHH-HTTCSCEEEEEECSSSSSCCCBCHHHHHHHHTTC-CSCEEEEEESSCGGGTHHHHHHHTCSEEEECGGGC
T ss_pred hHHHHHHHH-HcCCCEEEEEEEeCccCccchhcHHHHHHHHhcc-CCcEEEEEEecCHHHHHHHHHHcCCCEEEECcccC
Confidence 455677777 9999999999766651 22256788888764 44443311 11233 3688999999999654333
Q ss_pred cccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEE
Q psy1056 403 KKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMM 458 (590)
Q Consensus 403 ~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~ 458 (590)
+.. +..+.+.+++.++.+..+=--.||.+..+.+.-++|.|.+
T Consensus 92 ~~~-------------~~~~i~~i~~~G~k~gv~lnp~tp~~~~~~~l~~~D~Vlv 134 (231)
T 3ctl_A 92 NGQ-------------AFRLIDEIRRHDMKVGLILNPETPVEAMKYYIHKADKITV 134 (231)
T ss_dssp TTT-------------HHHHHHHHHHTTCEEEEEECTTCCGGGGTTTGGGCSEEEE
T ss_pred Ccc-------------HHHHHHHHHHcCCeEEEEEECCCcHHHHHHHHhcCCEEEE
Confidence 322 2334444445565444433555888888888889999954
|
| >1wx0_A Transaldolase; structural genomics, riken structural genomics/proteomics initiative, RSGI, transferas; 2.27A {Thermus thermophilus HB8} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=89.70 E-value=1.5 Score=41.78 Aligned_cols=121 Identities=18% Similarity=0.155 Sum_probs=81.2
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCc
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDM 409 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~ 409 (590)
...+.++.+.+.. +-+.|-.+-- .+| +..++.+.++ ++++-+=-+.|.++|..+.++|+++| |+..+| .
T Consensus 74 ~~i~eA~~l~~~~-~nv~IKIP~T-~eG-l~A~~~L~~~--GI~vN~TliFS~~Qa~~aa~AGa~~i--SpFVgR----i 142 (223)
T 1wx0_A 74 AMVAEGRRLAAIH-PNIVVKLPTT-EEG-LKACKRLSAE--GIKVNMTLIFSANQALLAARAGASYV--SPFLGR----V 142 (223)
T ss_dssp HHHHHHHHHHHHC-TTEEEEEESS-HHH-HHHHHHHHHT--TCCEEEEEECSHHHHHHHHHTTCSEE--EEBHHH----H
T ss_pred HHHHHHHHHHhhC-CCEEEEeCCC-HHH-HHHHHHHHHC--CCcEEEEEeCCHHHHHHHHHCCCeEE--Eeccch----H
Confidence 3445566666655 3344433211 122 6677777776 67776656779999999999999987 444444 3
Q ss_pred ccccc-chhHHHHHHHHHhcCC--CcEEecCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 410 QVIGR-NGTAVYRVAEYASRRG--VPVIADGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 410 ~~~g~-~~~~l~~~~~~~~~~~--v~iia~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
.+||. ....+.++..+.+.++ ..+++ .++|++.++..|..+|+|.+-+...+
T Consensus 143 dd~g~~G~~~v~~i~~~~~~~~~~t~vl~-AS~r~~~~v~~~~l~G~d~~Tip~~~ 197 (223)
T 1wx0_A 143 DDISWDGGELLREIVEMIQVQDLPVKVIA-ASIRHPRHVTEAALLGADIATMPHAV 197 (223)
T ss_dssp HHTTSCHHHHHHHHHHHHHHTTCSCEEEE-BCCCSHHHHHHHHHTTCSEEEECHHH
T ss_pred hhcCCCHHHHHHHHHHHHHHcCCCeEEee-cccCCHHHHHHHHHhCCCEEECCHHH
Confidence 55776 5666677777666554 33444 48999999999999999999777544
|
| >1vcv_A Probable deoxyribose-phosphate aldolase; DERA, hyperthermophIle, archaea, lyase; 2.00A {Pyrobaculum aerophilum} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=89.70 E-value=0.73 Score=44.02 Aligned_cols=122 Identities=11% Similarity=0.023 Sum_probs=73.1
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEE--ec----cccC---cHHHHHHHHCCCCEEEEc
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVI--GG----NVLF---GYQPRATLLNFIYQIEMI 399 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi--~g----~v~s---~~~a~~l~~~Gvd~i~v~ 399 (590)
.+..+..+...+.++..++++.. .+...++.+.++.+. ++ .-.+ ..+++. ++.|||.||+-
T Consensus 17 ~~i~~l~~~A~~~~~~aVcv~p~---------~v~~a~~~l~gv~v~tvigFP~G~~~~~~k~~E~~~-i~~GAdEID~V 86 (226)
T 1vcv_A 17 DEAVAGARKAEELGVAAYCVNPI---------YAPVVRPLLRKVKLCVVADFPFGALPTASRIALVSR-LAEVADEIDVV 86 (226)
T ss_dssp HHHHHHHHHHHHHTCSEEEECGG---------GHHHHGGGCSSSEEEEEESTTTCCSCHHHHHHHHHH-HTTTCSEEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEECHH---------HHHHHHHHhCCCeEEEEeCCCCCCCchHHHHHHHHH-HHCCCCEEEEe
Confidence 34455677777889999998543 222333333233332 11 1111 256778 99999999984
Q ss_pred ccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHH----HHHcCCCEEEECccc
Q psy1056 400 KFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMK----ALALGASTAMMGSLL 462 (590)
Q Consensus 400 ~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~k----alalGA~~v~~g~~l 462 (590)
+..+.-++ ..|.....-+..+.+.|....+++|..-+..+..++.+ |..+|||+|=-.+-|
T Consensus 87 inig~~~~--g~~~~v~~ei~~v~~a~~~~~lKvIlEt~~Lt~eei~~a~~ia~eaGADfVKTSTGf 151 (226)
T 1vcv_A 87 APIGLVKS--RRWAEVRRDLISVVGAAGGRVVKVITEEPYLRDEERYTLYDIIAEAGAHFIKSSTGF 151 (226)
T ss_dssp CCHHHHHT--TCHHHHHHHHHHHHHHTTTSEEEEECCGGGCCHHHHHHHHHHHHHHTCSEEECCCSC
T ss_pred cchhhhcC--CCHHHHHHHHHHHHHHHcCCCceEEEeccCCCHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 43332100 11222333455666666555689999999999888877 456799999544433
|
| >3i6e_A Muconate cycloisomerase I; structural genomics, NYSGXRC, targer 9468A, muconate lactonizing enzyme, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi} PDB: 3i6t_A | Back alignment and structure |
|---|
Probab=89.61 E-value=6.1 Score=40.75 Aligned_cols=117 Identities=17% Similarity=0.168 Sum_probs=79.6
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEec-ccc-CcHHH----HHHHHCCCCEEEEccccc
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGG-NVL-FGYQP----RATLLNFIYQIEMIKFIK 403 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g-~v~-s~~~a----~~l~~~Gvd~i~v~~~~~ 403 (590)
...+.++..++.|...+-+.........-++.++.+++.+|++++++. |.. +.++| +.|.+.|+++| +-
T Consensus 151 ~~~~~a~~~~~~G~~~~K~Kvg~~~~~~d~~~v~avR~a~~~~~l~vDan~~~~~~~A~~~~~~L~~~~i~~i----Eq- 225 (385)
T 3i6e_A 151 ADIALMERLRADGVGLIKLKTGFRDHAFDIMRLELIARDFPEFRVRVDYNQGLEIDEAVPRVLDVAQFQPDFI----EQ- 225 (385)
T ss_dssp HHHHHHHHHHHHTCCEEEEECSSSCHHHHHHHHHHHHHHCTTSEEEEECTTCCCGGGHHHHHHHHHTTCCSCE----EC-
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCCHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEE----EC-
Confidence 344566777788999998877554445557888999988888888864 222 55555 45556888888 21
Q ss_pred ccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcC-CCEEEECc
Q psy1056 404 KEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALG-ASTAMMGS 460 (590)
Q Consensus 404 ~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalG-A~~v~~g~ 460 (590)
. + ....+...++.....++||.++.-+.+..|+.+++..| +|.+++-.
T Consensus 226 -P---~-----~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~~~~~~~d~v~~k~ 274 (385)
T 3i6e_A 226 -P---V-----RAHHFELMARLRGLTDVPLLADESVYGPEDMVRAAHEGICDGVSIKI 274 (385)
T ss_dssp -C---S-----CTTCHHHHHHHHTTCSSCEEESTTCCSHHHHHHHHHHTCCSEEEECH
T ss_pred -C---C-----CcccHHHHHHHHHhCCCCEEEeCCcCCHHHHHHHHHcCCCCEEEecc
Confidence 1 1 11112334444445679999999999999999999887 57777653
|
| >3o1n_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, lyase; 1.03A {Salmonella enterica subsp} PDB: 3s42_A 3l2i_A* 3lb0_A 4guf_A 4gug_A* 4guh_A* 3nnt_A* 4guj_A* 3m7w_A 3oex_A 4gfs_A* 4gui_A* 1gqn_A 1l9w_A* 1qfe_A* | Back alignment and structure |
|---|
Probab=89.58 E-value=7.2 Score=38.28 Aligned_cols=118 Identities=18% Similarity=0.129 Sum_probs=70.9
Q ss_pred HHHHHHHHHHcCCcEEEEec--CCC--chhhHHHHHHHHHHhCCCceEEe-----cccc----CcHHH----HHHHHCC-
Q psy1056 331 DKNRLKLLSQAGVDVVILDS--SQG--NSIYQIEMIKFIKKEYPDMQVIG-----GNVL----FGYQP----RATLLNF- 392 (590)
Q Consensus 331 ~~e~~~~li~~gad~i~V~~--~~G--~~~~~l~~i~~i~~~~~~vpvi~-----g~v~----s~~~a----~~l~~~G- 392 (590)
....++.+...|+|++.+-. -.. ....+.+.++.+++..++.|+|+ .+.+ +.+.- +.+++.|
T Consensus 54 ~~~~~~~~~~~gaD~VElRvD~l~~~~~~~~v~~~l~~lr~~~~~~PiI~T~Rt~~eGG~~~~~~~~~~~ll~~~l~~g~ 133 (276)
T 3o1n_A 54 VKSEALAYREADFDILEWRVDHFANVTTAESVLEAAGAIREIITDKPLLFTFRSAKEGGEQALTTGQYIDLNRAAVDSGL 133 (276)
T ss_dssp HHHHHHHHTTSCCSEEEEEGGGCTTTTCHHHHHHHHHHHHHHCCSSCEEEECCBGGGTCSBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhCCCCEEEEEeccccccCcHHHHHHHHHHHHHhcCCCCEEEEEEEhhhCCCCCCCHHHHHHHHHHHHhcCC
Confidence 33445555567999998743 222 22457788889998877789985 2222 22222 3445678
Q ss_pred CCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecC----CCCCHHHHH----HHHHcCCCEE-EECc
Q psy1056 393 IYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADG----GVQSVGHVM----KALALGASTA-MMGS 460 (590)
Q Consensus 393 vd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~G----Gi~~~~di~----kalalGA~~v-~~g~ 460 (590)
+|+|||....... .+.++.+.+.+.+..||+|- +-.+..++. ++..+|||.| ++..
T Consensus 134 ~dyIDvEl~~~~~------------~~~~l~~~a~~~~~kvI~S~Hdf~~tP~~~el~~~~~~~~~~GaDIvKia~~ 198 (276)
T 3o1n_A 134 VDMIDLELFTGDD------------EVKATVGYAHQHNVAVIMSNHDFHKTPAAEEIVQRLRKMQELGADIPKIAVM 198 (276)
T ss_dssp CSEEEEEGGGCHH------------HHHHHHHHHHHTTCEEEEEEEESSCCCCHHHHHHHHHHHHHTTCSEEEEEEC
T ss_pred CCEEEEECcCCHH------------HHHHHHHHHHhCCCEEEEEeecCCCCcCHHHHHHHHHHHHHcCCCEEEEEec
Confidence 9999885432211 23344444445578899963 433434443 5778999999 4443
|
| >2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A | Back alignment and structure |
|---|
Probab=89.49 E-value=2.1 Score=42.45 Aligned_cols=92 Identities=15% Similarity=-0.034 Sum_probs=63.2
Q ss_pred HHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEc---ccccccCCCcccccc-chhHH-HHHHHHHhcCCCcEEec
Q psy1056 362 IKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMI---KFIKKEYPDMQVIGR-NGTAV-YRVAEYASRRGVPVIAD 436 (590)
Q Consensus 362 i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~---~~~~~~~~~~~~~g~-~~~~l-~~~~~~~~~~~v~iia~ 436 (590)
+..+.+. +-|+.+-++-+.-.|+.+.++|+|+|.++ +..... ..+.+. +.+.+ ..++..+...++|||+|
T Consensus 7 lr~l~~~--~~~i~~~~a~D~~sA~~~~~aG~~ai~vs~~~~a~~~G---~pD~~~vt~~em~~~~~~I~~~~~~PviaD 81 (290)
T 2hjp_A 7 LRAALDS--GRLFTAMAAHNPLVAKLAEQAGFGGIWGSGFELSASYA---VPDANILSMSTHLEMMRAIASTVSIPLIAD 81 (290)
T ss_dssp HHHHHHH--CCCEEEEECSSHHHHHHHHHHTCSEEEECHHHHHHHTT---SCTTTCSCHHHHHHHHHHHHTTCSSCEEEE
T ss_pred HHHHHhC--CCcEEEecCCCHHHHHHHHHcCCCEEEEChHHHHHhCC---CCCCCCCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 4444444 45777778889999999999999999883 222222 445555 65554 34566666667999996
Q ss_pred C--CCCCHHHHHH----HHHcCCCEEEE
Q psy1056 437 G--GVQSVGHVMK----ALALGASTAMM 458 (590)
Q Consensus 437 G--Gi~~~~di~k----alalGA~~v~~ 458 (590)
+ |..++.++++ .+..||.+|-+
T Consensus 82 ~d~Gyg~~~~~~~~v~~l~~aGa~gv~i 109 (290)
T 2hjp_A 82 IDTGFGNAVNVHYVVPQYEAAGASAIVM 109 (290)
T ss_dssp CTTTTSSHHHHHHHHHHHHHHTCSEEEE
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCeEEEE
Confidence 5 7667776654 45679999954
|
| >3jva_A Dipeptide epimerase; enolase superfamily, isomerase; 1.70A {Enterococcus faecalis V583} PDB: 3jw7_A* 3jzu_A* 3k1g_A* 3kum_A* | Back alignment and structure |
|---|
Probab=89.43 E-value=5.3 Score=40.69 Aligned_cols=119 Identities=11% Similarity=0.051 Sum_probs=78.9
Q ss_pred chhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhC-CCceEEec-c-ccCcHHHHHH----HHCCCCEEEEcc
Q psy1056 328 READKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEY-PDMQVIGG-N-VLFGYQPRAT----LLNFIYQIEMIK 400 (590)
Q Consensus 328 ~~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~-~~vpvi~g-~-v~s~~~a~~l----~~~Gvd~i~v~~ 400 (590)
.+...+.++.+++.|...+-+..... ...-++.++.+++.+ |++++.+. | .-+.++|.++ .+.|+++|
T Consensus 140 ~~~~~~~a~~~~~~G~~~~K~K~g~~-~~~d~~~v~avR~a~g~~~~l~vDan~~~~~~~a~~~~~~L~~~~i~~i---- 214 (354)
T 3jva_A 140 PNVMAQKAVEKVKLGFDTLKIKVGTG-IEADIARVKAIREAVGFDIKLRLDANQAWTPKDAVKAIQALADYQIELV---- 214 (354)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECCSC-HHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHTTTSCEEEE----
T ss_pred HHHHHHHHHHHHHhCCCeEEEEeCCC-HHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEE----
Confidence 34456677788889999988876432 344578889999887 67888863 2 2266666543 34677777
Q ss_pred cccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcC-CCEEEECcc
Q psy1056 401 FIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALG-ASTAMMGSL 461 (590)
Q Consensus 401 ~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalG-A~~v~~g~~ 461 (590)
+- . +... ... ..++.....++||++++.+.+..|+.+++..| +|.|++-..
T Consensus 215 Eq--P---~~~~--d~~---~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k~~ 266 (354)
T 3jva_A 215 EQ--P---VKRR--DLE---GLKYVTSQVNTTIMADESCFDAQDALELVKKGTVDVINIKLM 266 (354)
T ss_dssp EC--C---SCTT--CHH---HHHHHHHHCSSEEEESTTCCSHHHHHHHHHHTCCSEEEECHH
T ss_pred EC--C---CChh--hHH---HHHHHHHhCCCCEEEcCCcCCHHHHHHHHHcCCCCEEEECch
Confidence 21 1 1100 222 23333334579999999999999999999886 688877643
|
| >2zad_A Muconate cycloisomerase; muconate lactonizing enzyme (MLE), TM0006, struct genomics, NPPSFA; HET: 1PE; 1.60A {Thermotoga maritima} PDB: 3deq_A 3der_A* 3des_A* 3dfy_A | Back alignment and structure |
|---|
Probab=89.31 E-value=6.9 Score=39.59 Aligned_cols=115 Identities=18% Similarity=0.102 Sum_probs=76.9
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEec-cc-cCcHHH----HHHHHCCCC--EEEEcc
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGG-NV-LFGYQP----RATLLNFIY--QIEMIK 400 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g-~v-~s~~~a----~~l~~~Gvd--~i~v~~ 400 (590)
+...+.+..+.+.|.+.+-+...+ +...-++.++.+++..|++++.+. |. -+.++| +.|.+.|++ +|
T Consensus 141 ~~~~~~a~~~~~~Gf~~iKik~g~-~~~~d~~~v~avr~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~~~i---- 215 (345)
T 2zad_A 141 ENRVKEAKKIFEEGFRVIKIKVGE-NLKEDIEAVEEIAKVTRGAKYIVDANMGYTQKEAVEFARAVYQKGIDIAVY---- 215 (345)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCS-CHHHHHHHHHHHHHHSTTCEEEEECTTCSCHHHHHHHHHHHHHTTCCCSEE----
T ss_pred HHHHHHHHHHHHcCcCEEEEeecC-CHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCeeee----
Confidence 344566777888999999887654 334456778888887557888763 21 255555 456668999 88
Q ss_pred cccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcC-CCEEEE
Q psy1056 401 FIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALG-ASTAMM 458 (590)
Q Consensus 401 ~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalG-A~~v~~ 458 (590)
+-- +... ....+..++ +..++||++++.+.+..++.+.+..| +|.+++
T Consensus 216 E~P-----~~~~--~~~~~~~l~---~~~~ipia~dE~~~~~~~~~~~i~~~~~d~v~i 264 (345)
T 2zad_A 216 EQP-----VRRE--DIEGLKFVR---FHSPFPVAADESARTKFDVMRLVKEEAVDYVNI 264 (345)
T ss_dssp ECC-----SCTT--CHHHHHHHH---HHSSSCEEESTTCCSHHHHHHHHHHTCCSEEEE
T ss_pred eCC-----CCcc--cHHHHHHHH---HhCCCCEEEeCCcCCHHHHHHHHHhCCCCEEEE
Confidence 211 1100 222333333 34579999999999999999999988 678855
|
| >4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A* | Back alignment and structure |
|---|
Probab=89.23 E-value=11 Score=36.45 Aligned_cols=120 Identities=15% Similarity=0.096 Sum_probs=72.3
Q ss_pred hhHHHHHHHHHHcCCcEEEEec--CCC--chhhHHHHHHHHHHhCCCceEEe-----cccc----CcHH----HHHHHHC
Q psy1056 329 EADKNRLKLLSQAGVDVVILDS--SQG--NSIYQIEMIKFIKKEYPDMQVIG-----GNVL----FGYQ----PRATLLN 391 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~--~~G--~~~~~l~~i~~i~~~~~~vpvi~-----g~v~----s~~~----a~~l~~~ 391 (590)
++..+.++.+...|+|++.+-. -+. +...+.+.+..++...++.|+++ .+.+ +.+. .+.+.+.
T Consensus 32 ~e~l~~a~~~~~~~aD~vElR~D~l~~~~~~~~v~~~l~~lr~~~~~lPiI~T~Rt~~EGG~~~~~~~~~~~ll~~~~~~ 111 (258)
T 4h3d_A 32 KDIIKEAKELKDACLDIIEWRVDFFENVENIKEVKEVLYELRSYIHDIPLLFTFRSVVEGGEKLISRDYYTTLNKEISNT 111 (258)
T ss_dssp HHHHHHHHHHTTSSCSEEEEEGGGCTTTTCHHHHHHHHHHHHHHCTTSCEEEECCCGGGTCSCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCCCEEEEeeccccccCCHHHHHHHHHHHHHhcCCCCEEEEEechhhCCCCCCCHHHHHHHHHHHHhc
Confidence 3445566677778999998754 222 33556788888998877789984 2222 2221 2345556
Q ss_pred C-CCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecC----CCCCHHH----HHHHHHcCCCEE-EECc
Q psy1056 392 F-IYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADG----GVQSVGH----VMKALALGASTA-MMGS 460 (590)
Q Consensus 392 G-vd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~G----Gi~~~~d----i~kalalGA~~v-~~g~ 460 (590)
| +|+|||....... .+.++.+.+...++.||+|- +-.+-.+ +.++.++|||.+ ++..
T Consensus 112 ~~~d~iDvEl~~~~~------------~~~~l~~~a~~~~~kiI~S~Hdf~~TP~~~el~~~~~~~~~~gaDIvKia~~ 178 (258)
T 4h3d_A 112 GLVDLIDVELFMGDE------------VIDEVVNFAHKKEVKVIISNHDFNKTPKKEEIVSRLCRMQELGADLPKIAVM 178 (258)
T ss_dssp TCCSEEEEEGGGCHH------------HHHHHHHHHHHTTCEEEEEEEESSCCCCHHHHHHHHHHHHHTTCSEEEEEEC
T ss_pred CCchhhHHhhhccHH------------HHHHHHHHHHhCCCEEEEEEecCCCCCCHHHHHHHHHHHHHhCCCEEEEEEc
Confidence 6 8999885433222 12334444445568888865 4333344 446778899998 4443
|
| >2hzg_A Mandelate racemase/muconate lactonizing enzyme/EN superfamily; structural genomics, predicted mandelate racemase, PSI; 2.02A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=89.13 E-value=5.6 Score=41.21 Aligned_cols=119 Identities=10% Similarity=0.054 Sum_probs=79.7
Q ss_pred hhHHHHHHHHHHcCCcEEEEecC-CC-ch-hhHHHHHHHHHHhC-CCceEEec--ccc--CcHHH----HHHHHCCCCEE
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSS-QG-NS-IYQIEMIKFIKKEY-PDMQVIGG--NVL--FGYQP----RATLLNFIYQI 396 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~-~G-~~-~~~l~~i~~i~~~~-~~vpvi~g--~v~--s~~~a----~~l~~~Gvd~i 396 (590)
+...+.+..+.+.|.+.+-+..+ -| +. ...++.++.+++.+ +++++.+. ..- +.+++ +.|.+.|+++|
T Consensus 147 ~~~~~~a~~~~~~Gf~~iKik~spvG~~~~~~~~e~v~avr~a~G~d~~l~vDan~~~~~~~~~a~~~~~~l~~~~i~~i 226 (401)
T 2hzg_A 147 QETLERARAARRDGFAAVKFGWGPIGRGTVAADADQIMAAREGLGPDGDLMVDVGQIFGEDVEAAAARLPTLDAAGVLWL 226 (401)
T ss_dssp HHHHHHHHHHHHTTCSEEEEESTTTTSSCHHHHHHHHHHHHHHHCSSSEEEEECTTTTTTCHHHHHTTHHHHHHTTCSEE
T ss_pred HHHHHHHHHHHHhCCCeEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEECCCCCCCCHHHHHHHHHHHHhcCCCEE
Confidence 34456777788899999988721 12 33 45678899999877 57888864 222 44444 55667899988
Q ss_pred EEcccccccCCCccccccchhHHHHHHHHHh-cCCCcEEecCCCCCHHHHHHHHHcC-CCEEEECcc
Q psy1056 397 EMIKFIKKEYPDMQVIGRNGTAVYRVAEYAS-RRGVPVIADGGVQSVGHVMKALALG-ASTAMMGSL 461 (590)
Q Consensus 397 ~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~-~~~v~iia~GGi~~~~di~kalalG-A~~v~~g~~ 461 (590)
+-- + .. ..+...++..+ ..++||++++.+.+..++.+++..| +|.+++-..
T Consensus 227 ----EqP-----~---~~--~d~~~~~~l~~~~~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~ 279 (401)
T 2hzg_A 227 ----EEP-----F---DA--GALAAHAALAGRGARVRIAGGEAAHNFHMAQHLMDYGRIGFIQIDCG 279 (401)
T ss_dssp ----ECC-----S---CT--TCHHHHHHHHTTCCSSEEEECTTCSSHHHHHHHHHHSCCSEEEECHH
T ss_pred ----ECC-----C---Cc--cCHHHHHHHHhhCCCCCEEecCCcCCHHHHHHHHHCCCCCEEEeCcc
Confidence 211 1 01 11223344444 4579999999999999999999887 799988543
|
| >3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A* | Back alignment and structure |
|---|
Probab=89.09 E-value=2.7 Score=41.89 Aligned_cols=69 Identities=14% Similarity=0.041 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCch-----hhHHHHHHHHHHhC-C-CceEEecccc-----CcHHHHHHHHCCCCEEE
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNS-----IYQIEMIKFIKKEY-P-DMQVIGGNVL-----FGYQPRATLLNFIYQIE 397 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~-----~~~l~~i~~i~~~~-~-~vpvi~g~v~-----s~~~a~~l~~~Gvd~i~ 397 (590)
.....++.+++.|++.+.+..+.|.. +.-.+.++...+.. . .+||++|-.. +.+-++.+.++|+|++-
T Consensus 29 ~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g~rvpviaGvg~~~t~~ai~la~~a~~~Gadavl 108 (301)
T 3m5v_A 29 SYARLIKRQIENGIDAVVPVGTTGESATLTHEEHRTCIEIAVETCKGTKVKVLAGAGSNATHEAVGLAKFAKEHGADGIL 108 (301)
T ss_dssp HHHHHHHHHHHTTCCEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEEECCCSSHHHHHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 44567888999999999987766643 22245555555544 3 4899986554 34556677889999995
Q ss_pred E
Q psy1056 398 M 398 (590)
Q Consensus 398 v 398 (590)
+
T Consensus 109 v 109 (301)
T 3m5v_A 109 S 109 (301)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=89.00 E-value=1.5 Score=44.42 Aligned_cols=92 Identities=25% Similarity=0.222 Sum_probs=66.5
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCc
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDM 409 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~ 409 (590)
...+.+..+.++|++++-+..+.. ...+.+..+++.. ++|+++.--.++.-|..++++|+|.+.+-+.+-
T Consensus 47 atv~Qi~~l~~aG~diVRvavp~~---~~a~al~~I~~~~-~vPlvaDiHf~~~lal~a~e~G~dklRINPGNi------ 116 (366)
T 3noy_A 47 ATLNQIKRLYEAGCEIVRVAVPHK---EDVEALEEIVKKS-PMPVIADIHFAPSYAFLSMEKGVHGIRINPGNI------ 116 (366)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCSH---HHHHHHHHHHHHC-SSCEEEECCSCHHHHHHHHHTTCSEEEECHHHH------
T ss_pred HHHHHHHHHHHcCCCEEEeCCCCh---HHHHHHHHHHhcC-CCCEEEeCCCCHHHHHHHHHhCCCeEEECCccc------
Confidence 445678889999999998876542 2367889999988 799987444799999999999999986532221
Q ss_pred cccccchhHHHHHHHHHhcCCCcEEe
Q psy1056 410 QVIGRNGTAVYRVAEYASRRGVPVIA 435 (590)
Q Consensus 410 ~~~g~~~~~l~~~~~~~~~~~v~iia 435 (590)
| ....+.++.+.+++.++|+-.
T Consensus 117 ---g-~~~~~~~vv~~ak~~~~piRI 138 (366)
T 3noy_A 117 ---G-KEEIVREIVEEAKRRGVAVRI 138 (366)
T ss_dssp ---S-CHHHHHHHHHHHHHHTCEEEE
T ss_pred ---C-chhHHHHHHHHHHHcCCCEEE
Confidence 1 122345566667777888766
|
| >2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=88.99 E-value=2 Score=38.64 Aligned_cols=69 Identities=16% Similarity=0.066 Sum_probs=53.7
Q ss_pred chhHHHHHHHHHHcCCcEEEEecCCCc-hhhHHHHHHHHHHhC-CCceEEeccccCcHHHHHHHHCCCCEE
Q psy1056 328 READKNRLKLLSQAGVDVVILDSSQGN-SIYQIEMIKFIKKEY-PDMQVIGGNVLFGYQPRATLLNFIYQI 396 (590)
Q Consensus 328 ~~~~~e~~~~li~~gad~i~V~~~~G~-~~~~l~~i~~i~~~~-~~vpvi~g~v~s~~~a~~l~~~Gvd~i 396 (590)
..+..+.++.+.+.+++++.+....+. ...+.+.++.+++.. +++++++|+....++...+.+.|+|++
T Consensus 55 ~~p~e~lv~aa~~~~~diV~lS~~~~~~~~~~~~~i~~L~~~g~~~i~v~vGG~~~~~~~~~l~~~G~d~v 125 (161)
T 2yxb_A 55 RQTPEQVAMAAVQEDVDVIGVSILNGAHLHLMKRLMAKLRELGADDIPVVLGGTIPIPDLEPLRSLGIREI 125 (161)
T ss_dssp BCCHHHHHHHHHHTTCSEEEEEESSSCHHHHHHHHHHHHHHTTCTTSCEEEEECCCHHHHHHHHHTTCCEE
T ss_pred CCCHHHHHHHHHhcCCCEEEEEeechhhHHHHHHHHHHHHhcCCCCCEEEEeCCCchhcHHHHHHCCCcEE
Confidence 345567788888999999998776543 355678888888874 479999988877777777889999986
|
| >1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A* | Back alignment and structure |
|---|
Probab=88.86 E-value=3.2 Score=41.38 Aligned_cols=112 Identities=13% Similarity=0.179 Sum_probs=65.6
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCch-----hhHHHHHHHHHHhC-CCceEEecccc-----CcHHHHHHHHCCCCEEEE
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNS-----IYQIEMIKFIKKEY-PDMQVIGGNVL-----FGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~-----~~~l~~i~~i~~~~-~~vpvi~g~v~-----s~~~a~~l~~~Gvd~i~v 398 (590)
.....++.+++.|++.+.+..+.|.. +.-.+.++...+.. ..+||++|-.. +.+-++.+.++|+|++-+
T Consensus 34 ~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv 113 (301)
T 1xky_A 34 KTTKLVNYLIDNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVDKRVPVIAGTGSNNTHASIDLTKKATEVGVDAVML 113 (301)
T ss_dssp HHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCceEEeCCCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 34567888999999999988766643 12244555555443 36899986554 345566778899999955
Q ss_pred -cccccccCCCccccccchhHHH-HHHHHHhcCCCcEEe-c----CCCCCHHHHHHHHH
Q psy1056 399 -IKFIKKEYPDMQVIGRNGTAVY-RVAEYASRRGVPVIA-D----GGVQSVGHVMKALA 450 (590)
Q Consensus 399 -~~~~~~~~~~~~~~g~~~~~l~-~~~~~~~~~~v~iia-~----GGi~~~~di~kala 450 (590)
.+.-.+ .+...+. -....+...++|||. . .|+.-+.+..+.|+
T Consensus 114 ~~P~y~~---------~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La 163 (301)
T 1xky_A 114 VAPYYNK---------PSQEGMYQHFKAIAESTPLPVMLYNVPGRSIVQISVDTVVRLS 163 (301)
T ss_dssp ECCCSSC---------CCHHHHHHHHHHHHHTCSSCEEEEECHHHHSSCCCHHHHHHHH
T ss_pred cCCCCCC---------CCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHH
Confidence 221111 1222222 233444445688776 1 35554555555565
|
| >4e4u_A Mandalate racemase/muconate lactonizing enzyme; mandelate racemase, aldolase, structural genomics, biology; 1.35A {Unidentified} | Back alignment and structure |
|---|
Probab=88.85 E-value=3.4 Score=43.17 Aligned_cols=118 Identities=10% Similarity=-0.019 Sum_probs=78.7
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCC------------chhhHHHHHHHHHHhC-CCceEEecccc--CcHHHH----HHH
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQG------------NSIYQIEMIKFIKKEY-PDMQVIGGNVL--FGYQPR----ATL 389 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G------------~~~~~l~~i~~i~~~~-~~vpvi~g~v~--s~~~a~----~l~ 389 (590)
+...+.++.+++.|...+-+..... +...-++.++.+|+.+ +++++++.--. +.++|. .|.
T Consensus 146 e~~~~~a~~~~~~G~~~iKlK~g~~~~~~~g~~~~~~~~~~d~~~v~avR~a~G~d~~l~vDaN~~~~~~~A~~~~~~L~ 225 (412)
T 4e4u_A 146 DLAAECAAENVKLGFTAVKFDPAGPYTAYSGHQLSLEVLDRCELFCRRVREAVGSKADLLFGTHGQMVPSSAIRLAKRLE 225 (412)
T ss_dssp HHHHHHHHHHHHHTCSEEEECCSCCCBTTCCBCCCHHHHHHHHHHHHHHHHHHTTSSEEEECCCSCBCHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCCccccccccchhhHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 4455677788889999998865321 1234577888899887 57888864222 666654 455
Q ss_pred HCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcC-CCEEEECc
Q psy1056 390 LNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALG-ASTAMMGS 460 (590)
Q Consensus 390 ~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalG-A~~v~~g~ 460 (590)
+.|+++| +- . +. . ..+...++..+..++||++++.+.+..++.+++..| +|.+++-.
T Consensus 226 ~~~i~~i----Ee--P---~~---~--~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~d~ 283 (412)
T 4e4u_A 226 KYDPLWF----EE--P---VP---P--GQEEAIAQVAKHTSIPIATGERLTTKYEFHKLLQAGGASILQLNV 283 (412)
T ss_dssp GGCCSEE----EC--C---SC---S--SCHHHHHHHHHTCSSCEEECTTCCHHHHHHHHHHTTCCSEECCCT
T ss_pred hcCCcEE----EC--C---CC---h--hhHHHHHHHHhhCCCCEEecCccCCHHHHHHHHHcCCCCEEEeCc
Confidence 6888888 21 1 11 1 112233444445679999999999999999999988 67776653
|
| >2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=88.78 E-value=3.1 Score=41.29 Aligned_cols=69 Identities=17% Similarity=0.087 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCchh-----hHHHHHHHHHHhC-CCceEEecccc-----CcHHHHHHHHCCCCEEEE
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNSI-----YQIEMIKFIKKEY-PDMQVIGGNVL-----FGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~~-----~~l~~i~~i~~~~-~~vpvi~g~v~-----s~~~a~~l~~~Gvd~i~v 398 (590)
.....++.+++.|++.+.+..+.|... .-.+.++...+.. ..+||++|-.. +.+-++.+.++|+|++-+
T Consensus 22 ~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~Gadavlv 101 (294)
T 2ehh_A 22 ALGNLIEFHVDNGTDAILVCGTTGESPTLTFEEHEKVIEFAVKRAAGRIKVIAGTGGNATHEAVHLTAHAKEVGADGALV 101 (294)
T ss_dssp HHHHHHHHHHTTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 345678888999999999877666431 2244555555443 36899986554 345566778899999955
|
| >2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A* | Back alignment and structure |
|---|
Probab=88.76 E-value=1 Score=44.42 Aligned_cols=64 Identities=17% Similarity=0.135 Sum_probs=48.8
Q ss_pred HHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEE
Q psy1056 333 NRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 333 e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v 398 (590)
+.+....++|+|++.+++ .....+....+.++..+|++|+.+-+..+.+.+..+.++|||+|-+
T Consensus 193 ee~~~A~~aGaD~I~ld~--~~~~~l~~~v~~l~~~~~~~~i~AsGGI~~~ni~~~~~aGaD~i~v 256 (273)
T 2b7n_A 193 EEAKNAMNAGADIVMCDN--LSVLETKEIAAYRDAHYPFVLLEASGNISLESINAYAKSGVDAISV 256 (273)
T ss_dssp HHHHHHHHHTCSEEEEET--CCHHHHHHHHHHHHHHCTTCEEEEESSCCTTTHHHHHTTTCSEEEC
T ss_pred HHHHHHHHcCCCEEEECC--CCHHHHHHHHHHhhccCCCcEEEEECCCCHHHHHHHHHcCCcEEEE
Confidence 445556678999999876 3344555566667777888998866656999999999999999955
|
| >1l6w_A Fructose-6-phosphate aldolase 1; alpha-beta barrel, domain swapping, lyase; 1.93A {Escherichia coli} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=88.72 E-value=1.4 Score=41.78 Aligned_cols=121 Identities=14% Similarity=0.156 Sum_probs=80.3
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCc
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDM 409 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~ 409 (590)
...+.++.+.+..-+ +.|-.+- ..+| +..++.+.++ ++++-+=-+.|.++|..+.++|++++ |+..+| .
T Consensus 67 ~mi~eA~~l~~~~~n-v~IKIP~-T~eG-l~A~~~L~~~--GI~vn~TliFS~~QA~~aa~AGa~~i--SpfvgR----i 135 (220)
T 1l6w_A 67 GMVNDALKLRSIIAD-IVVKVPV-TAEG-LAAIKMLKAE--GIPTLGTAVYGAAQGLLSALAGAEYV--APYVNR----I 135 (220)
T ss_dssp HHHHHHHHHHHHSTT-CEEEEEC-SHHH-HHHHHHHHHH--TCCEEEEEECSHHHHHHHHHHTCSEE--EEBHHH----H
T ss_pred HHHHHHHHHHHhCCC-EEEEeCC-CHHH-HHHHHHHHHC--CCcEEEEEeCCHHHHHHHHHCCCeEE--Eeccch----h
Confidence 334556666665422 3333221 1122 6677778777 67776656779999999999999988 444444 3
Q ss_pred ccccc-chhHHHHHHHHHhcCC--CcEEecCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 410 QVIGR-NGTAVYRVAEYASRRG--VPVIADGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 410 ~~~g~-~~~~l~~~~~~~~~~~--v~iia~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
.+||. ....+.++..+.+.++ ..+++. ++|++.++..|..+|+|.+-+...+
T Consensus 136 dd~g~~G~~~i~~~~~~y~~~~~~t~il~A-S~r~~~~v~~~~l~G~d~~Tip~~~ 190 (220)
T 1l6w_A 136 DAQGGSGIQTVTDLHQLLKMHAPQAKVLAA-SFKTPRQALDCLLAGCESITLPLDV 190 (220)
T ss_dssp HHTTSCHHHHHHHHHHHHHHHCTTCEEEEB-CCSSHHHHHHHHHTTCSEEEECHHH
T ss_pred hcccccHHHHHHHHHHHHHhcCCCeEEeec-ccCCHHHHHHHHHhCCCeEECCHHH
Confidence 55666 5556666666655443 445554 7999999999999999999777544
|
| >3hqn_D Pyruvate kinase, PK; TIM barrel, T-state enzyme, transferase, allosteric enzyme, binding, glycolysis, magnesium, metal-binding, NUCL binding; 2.00A {Leishmania mexicana} PDB: 1pkl_A 3hqo_K* 3hqp_A* 3hqq_A* 3is4_A* 3ktx_A* 3qv6_A* 3qv7_D* 3qv8_D* 3srk_A* 3e0w_A 3e0v_A 3pp7_A* 3qv9_A* | Back alignment and structure |
|---|
Probab=88.63 E-value=28 Score=37.03 Aligned_cols=265 Identities=17% Similarity=0.131 Sum_probs=0.0
Q ss_pred chHHHHHHHHHcCCcEEEEcCCCCchHHHHHHHHHhhhcCCCcccccccccchHHHHHHHHHhcccccc----ccccccC
Q psy1056 137 ADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGLRV----GSHGCHG 212 (590)
Q Consensus 137 d~~~~~~~l~~~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~im~~~~~~~~~~~~a~~~m~~~~~v----~~~~~~~ 212 (590)
++.+.+..|+++|.|+.-++-+||..+...+.++.+++ -..+......+. | .+-+
T Consensus 33 ~~~e~l~~Li~aGmnv~RlNfSHG~~e~h~~~i~~iR~-------------------~~~~~g~~vaIl~Dl~G--PkIR 91 (499)
T 3hqn_D 33 QSVEALKGLIQSGMSVARMNFSHGSHEYHQTTINNVRQ-------------------AAAELGVNIAIALDTKG--PEIR 91 (499)
T ss_dssp CSHHHHHHHHHHTEEEEEEETTSSCHHHHHHHHHHHHH-------------------HHHHHTCCCEEEEECCC--CCCB
T ss_pred CCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHH-------------------HHHHhCCcEEEEEeCCC--CEEe
Q ss_pred ceee----EEeeCCCCCCeEEEEEecchhhccccccccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEc
Q psy1056 213 FCGF----PVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILN 288 (590)
Q Consensus 213 ~~~~----pVvd~~~~~~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd 288 (590)
.+.+ +++.. |..+=+.+..+....... +.+.++... +...-+.+....+|
T Consensus 92 ~g~~~~~~~vL~~----G~~~~lt~~~~~~~~g~~---------------~~i~v~y~~-------l~~~v~~G~~ilid 145 (499)
T 3hqn_D 92 TGQFVGGDAVMER----GATCYVTTDPAFADKGTK---------------DKFYIDYQN-------LSKVVRPGNYIYID 145 (499)
T ss_dssp BCCBGGGEEEECT----TCEEEEECCGGGTTCBCS---------------SEEEBSCTT-------HHHHCCTTCEEEET
T ss_pred eeccCCCCeEEcC----CCEEEEEecCcccCCCCC---------------CEEecchHH-------HHhhcCCCCEEEEe
Q ss_pred CCCceEEEEeecc----cccccCCCCCCcccCCceEEeEeeccc---hhHHHHHHHHHHcCCcEEEEecCCCchhhHHHH
Q psy1056 289 DKGELIALIARTD----LKKSRDYPDSSKDENNQLIVGAAIGTR---EADKNRLKLLSQAGVDVVILDSSQGNSIYQIEM 361 (590)
Q Consensus 289 ~~g~l~Giit~~d----ll~~~~~~~~~~d~~~~l~v~a~i~~~---~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~ 361 (590)
||.+.-.|...+ +.-.....-.+....+--+-+..+... +...+-+...++.|+|++.+...+. ...+.+.
T Consensus 146 -DG~i~l~V~~~~~~~~i~~~v~~gG~L~~~KgvNlPg~~~~lp~ltekD~~dl~~~~~~~vD~i~~sfVr~-a~dv~~~ 223 (499)
T 3hqn_D 146 -DGILILQVQSHEDEQTLECTVTNSHTISDRRGVNLPGCDVDLPAVSAKDRVDLQFGVEQGVDMIFASFIRS-AEQVGDV 223 (499)
T ss_dssp -TTTEEEEEEEEEETTEEEEEECSCEEEETTCBEECTTSCCCCCSSCHHHHHHHHHHHHTTCSEEEETTCCS-HHHHHHH
T ss_pred -CCEEEEEEEEEcCCCeEEEEEEeCcEeeCCCceecCCCCCCCCCCCHHHHHHHHHHHHcCCCEEEecCCCC-HHHHHHH
Q ss_pred HHHHHHhCCCceEEec--cccCcHHHHHHHHCCCCEEEE-----cccccccCCCccccccchhHHHHHHHHHhcCCCcEE
Q psy1056 362 IKFIKKEYPDMQVIGG--NVLFGYQPRATLLNFIYQIEM-----IKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVI 434 (590)
Q Consensus 362 i~~i~~~~~~vpvi~g--~v~s~~~a~~l~~~Gvd~i~v-----~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~ii 434 (590)
-+.+.+.-.+++++++ +....+.....+++ +|+|-| +++...+ . -+..-..+...|...+.|+|
T Consensus 224 r~~l~~~~~~i~IiaKIE~~eav~nldeIl~~-sDgImVaRGDLgvEi~~e---~-----vp~~Qk~iI~~c~~agkpVi 294 (499)
T 3hqn_D 224 RKALGPKGRDIMIICKIENHQGVQNIDSIIEE-SDGIMVARGDLGVEIPAE---K-----VVVAQKILISKCNVAGKPVI 294 (499)
T ss_dssp HHHHCGGGTTSEEEEEECSHHHHHTHHHHHHH-SSEEEEEHHHHHHHSCHH---H-----HHHHHHHHHHHHHHHTCCEE
T ss_pred HHHHHhcCCCCeEEEEECCHHHHHhHHHHHHh-CCcEEEccccccCcCCHH---H-----HHHHHHHHHHHHHHcCCCeE
Q ss_pred ecCCCCCHH------------HHHHHHHcCCCEEEEC
Q psy1056 435 ADGGVQSVG------------HVMKALALGASTAMMG 459 (590)
Q Consensus 435 a~GGi~~~~------------di~kalalGA~~v~~g 459 (590)
...-+..+. |++.|+.-|||+||+.
T Consensus 295 ~ATQmLeSMi~~p~PTRAEvsDVanaV~dG~DavMLS 331 (499)
T 3hqn_D 295 CATQMLESMTYNPRPTRAEVSDVANAVFNGADCVMLS 331 (499)
T ss_dssp EESSSSGGGGTSSSCCHHHHHHHHHHHHHTCSEEEES
T ss_pred EeehhHHHhccCCCccHHHHHHHHHHHHcCCcEEEEe
|
| >2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.61 E-value=0.24 Score=48.64 Aligned_cols=67 Identities=16% Similarity=0.066 Sum_probs=47.4
Q ss_pred cHHHHHHHHCCCCEEEE-cccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECc
Q psy1056 382 GYQPRATLLNFIYQIEM-IKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGS 460 (590)
Q Consensus 382 ~~~a~~l~~~Gvd~i~v-~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~ 460 (590)
.+.|+.+.+.|++.+.+ .+.. . .... +.+.++...+|+...|||++- |+.+.+ +||+-|.+|+
T Consensus 41 ~~~A~~~~~~Ga~~l~vvDL~~--~---------n~~~---i~~i~~~~~~pv~vgGGir~~-~~~~~l-~Ga~~Viigs 104 (260)
T 2agk_A 41 SYYAKLYKDRDVQGCHVIKLGP--N---------NDDA---AREALQESPQFLQVGGGINDT-NCLEWL-KWASKVIVTS 104 (260)
T ss_dssp HHHHHHHHHTTCTTCEEEEESS--S---------CHHH---HHHHHHHSTTTSEEESSCCTT-THHHHT-TTCSCEEECG
T ss_pred HHHHHHHHHcCCCEEEEEeCCC--C---------CHHH---HHHHHhcCCceEEEeCCCCHH-HHHHHh-cCCCEEEECc
Confidence 35678888899997743 1110 1 2222 333444456999999999986 999999 9999999998
Q ss_pred cccC
Q psy1056 461 LLAG 464 (590)
Q Consensus 461 ~l~~ 464 (590)
.+..
T Consensus 105 ~a~~ 108 (260)
T 2agk_A 105 WLFT 108 (260)
T ss_dssp GGBC
T ss_pred HHHh
Confidence 8654
|
| >3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=88.56 E-value=3.5 Score=41.12 Aligned_cols=69 Identities=19% Similarity=0.225 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCch-----hhHHHHHHHHHHhC-CCceEEecccc-----CcHHHHHHHHCCCCEEEE
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNS-----IYQIEMIKFIKKEY-PDMQVIGGNVL-----FGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~-----~~~l~~i~~i~~~~-~~vpvi~g~v~-----s~~~a~~l~~~Gvd~i~v 398 (590)
.....++.+++.|++.+.+..+.|.. +.-.+.++...+.. ..+||++|-.. +.+-++.+.++|+|++-+
T Consensus 38 ~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~st~~ai~la~~A~~~Gadavlv 117 (304)
T 3cpr_A 38 AGREVAAYLVDKGLDSLVLAGTTGESPTTTAAEKLELLKAVREEVGDRAKLIAGVGTNNTRTSVELAEAAASAGADGLLV 117 (304)
T ss_dssp HHHHHHHHHHHTTCCEEEESSTTTTTTTSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEecCCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 34567888999999999987766543 22244555555443 36899986554 345566778899999955
|
| >3go2_A Putative L-alanine-DL-glutamate epimerase; structural genomics, isomerase, PSI-2; 1.70A {Burkholderia xenovorans} PDB: 2oo6_A 3sn0_A 3sn1_A* 3sn4_A* | Back alignment and structure |
|---|
Probab=88.41 E-value=4.8 Score=41.96 Aligned_cols=115 Identities=7% Similarity=-0.007 Sum_probs=76.5
Q ss_pred hhHHHHHHHHHHcCCcEEEEecC-----------CCc--------------hhhHHHHHHHHHHhC-CCceEEecc--cc
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSS-----------QGN--------------SIYQIEMIKFIKKEY-PDMQVIGGN--VL 380 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~-----------~G~--------------~~~~l~~i~~i~~~~-~~vpvi~g~--v~ 380 (590)
+...+.++..++.|...+-+... .|. ....++.++.+|+.+ |+.++++.- .-
T Consensus 145 e~~~~~a~~~~~~Gf~~iKlKv~~~~~~~~~~~~pG~~~~~~~~~~~~~~~~~~~~e~v~avR~avG~d~~l~vDaN~~~ 224 (409)
T 3go2_A 145 DGVKRTAEEARERQFRAIKTNIFIHDDGPLHAWRPGFAVPFQPALNVDRKVLRNLRAHLEALRDGAGPDVEILLDLNFNA 224 (409)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCEECSSSSCEECBGGGTBSCCTTCCCCHHHHHHHHHHHHHHHHHHCTTSEEEEECTTCS
T ss_pred HHHHHHHHHHHHcCCCEEEEcccccccccccccccCCCccCCcccccchHHHHHHHHHHHHHHHHhCCCCEEEEECCCCC
Confidence 34556777888899999887650 010 123467889999887 678888642 22
Q ss_pred CcHHHHH----HHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcC-CCE
Q psy1056 381 FGYQPRA----TLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALG-AST 455 (590)
Q Consensus 381 s~~~a~~----l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalG-A~~ 455 (590)
+.++|.+ |.+.|+++|.. . .. ... ..++..+..++||++++.+.+..++.+++..| +|.
T Consensus 225 ~~~~A~~~~~~L~~~~i~~iE~------P---~~----d~~---~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~ 288 (409)
T 3go2_A 225 KPEGYLKILRELADFDLFWVEI------D---SY----SPQ---GLAYVRNHSPHPISSCETLFGIREFKPFFDANAVDV 288 (409)
T ss_dssp CHHHHHHHHHHTTTSCCSEEEC------C---CS----CHH---HHHHHHHTCSSCEEECTTCCHHHHHHHHHHTTCCSE
T ss_pred CHHHHHHHHHHHhhcCCeEEEe------C---cC----CHH---HHHHHHhhCCCCEEeCCCcCCHHHHHHHHHhCCCCE
Confidence 6666544 44578888831 1 10 222 23333344579999999999999999999988 688
Q ss_pred EEEC
Q psy1056 456 AMMG 459 (590)
Q Consensus 456 v~~g 459 (590)
+++-
T Consensus 289 v~~k 292 (409)
T 3go2_A 289 AIVD 292 (409)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 7664
|
| >1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A* | Back alignment and structure |
|---|
Probab=88.41 E-value=1.5 Score=44.58 Aligned_cols=65 Identities=18% Similarity=0.127 Sum_probs=51.4
Q ss_pred EeccccccccCCCCCCC--CccCCcccccccccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCc
Q psy1056 69 VTSRDVDFLENSANMDL--KIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTRE 136 (590)
Q Consensus 69 vT~~Did~l~~~~~~~~--~~~~~~~~~l~~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~ 136 (590)
.+++ ++.+.|+.... .+++++++.+. ...++.|++.++|..++...++.+++..|++++++...+
T Consensus 14 ~~fd--~v~l~p~~~~~~~~~~vdl~t~i~-g~~l~~Pi~~a~mag~s~~~la~a~~~~gg~g~~~~~~~ 80 (336)
T 1ypf_A 14 FDYE--DIQLIPAKCIVNSRSECDTTVTLG-KHKFKLPVVPANMQTIIDERIATYLAENNYFYIMHRFQP 80 (336)
T ss_dssp CCGG--GEEECCCCCCCSSGGGCBCCEEET-TEEESSSEEECSSTTTCCHHHHHHHHHTTCCCCCCCSSG
T ss_pred CCcc--eEEEecccCCCCCcccCcceEEEC-CEEecCcEEECCCCCCChHHHHHHHHhCCCEEEecCCCC
Confidence 4567 77778887655 45788888887 477889999999999999888877889999998776543
|
| >2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661} | Back alignment and structure |
|---|
Probab=88.37 E-value=3.2 Score=41.14 Aligned_cols=69 Identities=14% Similarity=0.022 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCchh-----hHHHHHHHHHHhC-CCceEEecccc-----CcHHHHHHHHCCCCEEEE
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNSI-----YQIEMIKFIKKEY-PDMQVIGGNVL-----FGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~~-----~~l~~i~~i~~~~-~~vpvi~g~v~-----s~~~a~~l~~~Gvd~i~v 398 (590)
.....++.+++.|++.+.+..+.|... .-.+.++...+.. ..+||++|-.. +.+-++.+.++|+|++-+
T Consensus 22 ~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gadavlv 101 (289)
T 2yxg_A 22 GLEENINFLIENGVSGIVAVGTTGESPTLSHEEHKKVIEKVVDVVNGRVQVIAGAGSNCTEEAIELSVFAEDVGADAVLS 101 (289)
T ss_dssp HHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 345678889999999999877666432 2244555555433 36899986554 345567778899999955
|
| >3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=88.32 E-value=3.8 Score=40.67 Aligned_cols=168 Identities=9% Similarity=0.005 Sum_probs=99.0
Q ss_pred HHHHHHHHHhcCCCcceEEcCCCceEEEEeec---ccccccCCCCCCcccCCceEEeEeec--cchhHHHHHHHHHHcCC
Q psy1056 269 LEEANVILEKSKKGKLPILNDKGELIALIART---DLKKSRDYPDSSKDENNQLIVGAAIG--TREADKNRLKLLSQAGV 343 (590)
Q Consensus 269 l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~---dll~~~~~~~~~~d~~~~l~v~a~i~--~~~~~~e~~~~li~~ga 343 (590)
+.+..+.+.+++++.+.+....|+..- +|.. .+++.... ...++..+.+.++ ...+..+.++...+.|+
T Consensus 26 l~~lv~~li~~Gv~gl~~~GttGE~~~-Ls~~Er~~v~~~~~~-----~~~gr~pviaGvg~~~t~~ai~la~~A~~~Ga 99 (294)
T 3b4u_A 26 MIAHARRCLSNGCDSVTLFGTTGEGCS-VGSRERQAILSSFIA-----AGIAPSRIVTGVLVDSIEDAADQSAEALNAGA 99 (294)
T ss_dssp HHHHHHHHHHTTCSEEEESSTTTTGGG-SCHHHHHHHHHHHHH-----TTCCGGGEEEEECCSSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCEEEECccccChhh-CCHHHHHHHHHHHHH-----HhCCCCcEEEeCCCccHHHHHHHHHHHHhcCC
Confidence 556677778889998888766565322 1222 22222111 1122322333333 33556677888888999
Q ss_pred cEEEEecCC----CchhhHHHHHHHHHHhCC--CceEEecccc-------CcHHHHHHH-HCC--CCEEEEcccccccCC
Q psy1056 344 DVVILDSSQ----GNSIYQIEMIKFIKKEYP--DMQVIGGNVL-------FGYQPRATL-LNF--IYQIEMIKFIKKEYP 407 (590)
Q Consensus 344 d~i~V~~~~----G~~~~~l~~i~~i~~~~~--~vpvi~g~v~-------s~~~a~~l~-~~G--vd~i~v~~~~~~~~~ 407 (590)
|.+.+..+. ...+++.+..+.+.+..| ++|+++.|+. +.+...+|. +.. +-+|+-+ ..
T Consensus 100 davlv~~P~y~~~~s~~~l~~~f~~va~a~p~~~lPiilYn~P~~tg~~l~~~~~~~La~~~pn~ivgiKds---~g--- 173 (294)
T 3b4u_A 100 RNILLAPPSYFKNVSDDGLFAWFSAVFSKIGKDARDILVYNIPSVTMVTLSVELVGRLKAAFPGIVTGVKDS---SG--- 173 (294)
T ss_dssp SEEEECCCCSSCSCCHHHHHHHHHHHHHHHCTTCCCEEEEECHHHHSCCCCHHHHHHHHHHCTTTEEEEEEC---CC---
T ss_pred CEEEEcCCcCCCCCCHHHHHHHHHHHHHhcCCCCCcEEEEECcchhCcCCCHHHHHHHHHhCCCcEEEEEEC---CC---
Confidence 998886643 234667788888888876 7999987753 788888887 542 2233111 00
Q ss_pred CccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcc
Q psy1056 408 DMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSL 461 (590)
Q Consensus 408 ~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~ 461 (590)
....+.++.+.+. +..++. | +...+.-++++||++++-|..
T Consensus 174 -------d~~~~~~~~~~~~--~f~v~~--G--~d~~~l~~l~~G~~G~is~~~ 214 (294)
T 3b4u_A 174 -------NWSHTERLLKEHG--DLAILI--G--DERDLARGVRLGGQGAISGVA 214 (294)
T ss_dssp -------CHHHHHHHHHHHT--TSEEEE--C--CHHHHHHHHHTTCCEEEESGG
T ss_pred -------CHHHHHHHHHhCC--CeEEEE--c--cHHHHHHHHHCCCCEEEeCHH
Confidence 1122333433332 455554 3 355677899999999988754
|
| >1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=88.29 E-value=4.6 Score=39.71 Aligned_cols=111 Identities=16% Similarity=0.164 Sum_probs=74.7
Q ss_pred hhHHHHHHHHHHcCCcEEEEecC---------CCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEc
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSS---------QGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMI 399 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~---------~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~ 399 (590)
+...+.++.+.++|++++-+..- +|....-+..++.+++++ ++|++. ++.+.+.+..+.+. +|++.+.
T Consensus 52 e~a~~~a~~~k~~ga~~~k~~~~kprts~~~f~g~g~~gl~~l~~~~~~~-Gl~~~t-e~~d~~~~~~l~~~-vd~~kIg 128 (276)
T 1vs1_A 52 EQVREAALAVKEAGAHMLRGGAFKPRTSPYSFQGLGLEGLKLLRRAGDEA-GLPVVT-EVLDPRHVETVSRY-ADMLQIG 128 (276)
T ss_dssp HHHHHHHHHHHHHTCSEEECBSSCCCSSTTSCCCCTHHHHHHHHHHHHHH-TCCEEE-ECCCGGGHHHHHHH-CSEEEEC
T ss_pred HHHHHHHHHHHHhCCCEEEeEEEeCCCChhhhcCCCHHHHHHHHHHHHHc-CCcEEE-ecCCHHHHHHHHHh-CCeEEEC
Confidence 44556788888999999765431 122223356666666666 788876 99999999999999 9999773
Q ss_pred ccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCC-CHHHHHHHHH----cCCCEE
Q psy1056 400 KFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQ-SVGHVMKALA----LGASTA 456 (590)
Q Consensus 400 ~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~-~~~di~kala----lGA~~v 456 (590)
-.+.+. ...++.++ +.+.||+.+=|.. |..|+..|+. .|..-+
T Consensus 129 s~~~~n-------------~~ll~~~a-~~~kPV~lk~G~~~t~~ei~~Ave~i~~~Gn~~i 176 (276)
T 1vs1_A 129 ARNMQN-------------FPLLREVG-RSGKPVLLKRGFGNTVEELLAAAEYILLEGNWQV 176 (276)
T ss_dssp GGGTTC-------------HHHHHHHH-HHTCCEEEECCTTCCHHHHHHHHHHHHHTTCCCE
T ss_pred cccccC-------------HHHHHHHH-ccCCeEEEcCCCCCCHHHHHHHHHHHHHcCCCeE
Confidence 222222 11222222 4579999999997 9999987765 466433
|
| >2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X* | Back alignment and structure |
|---|
Probab=88.23 E-value=2.8 Score=41.16 Aligned_cols=66 Identities=11% Similarity=-0.049 Sum_probs=52.5
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCC---chhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHC--CCCEE
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQG---NSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLN--FIYQI 396 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G---~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~--Gvd~i 396 (590)
+...+.+..+++.|++++-|..... ....+...++.+++.. ++|+.+ +...++.++.+.++ |++.|
T Consensus 34 ~~a~~~a~~~v~~GAdiIDIg~~s~~~eE~~rv~~vi~~l~~~~-~~pisI-DT~~~~v~~aal~a~~Ga~iI 104 (271)
T 2yci_X 34 RPIQEWARRQAEKGAHYLDVNTGPTADDPVRVMEWLVKTIQEVV-DLPCCL-DSTNPDAIEAGLKVHRGHAMI 104 (271)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCSCSSCHHHHHHHHHHHHHHHC-CCCEEE-ECSCHHHHHHHHHHCCSCCEE
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCcCchhHHHHHHHHHHHHHHhC-CCeEEE-eCCCHHHHHHHHHhCCCCCEE
Confidence 3456678899999999999876332 2345678888888877 789887 66689999999999 99988
|
| >3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A | Back alignment and structure |
|---|
Probab=88.19 E-value=3.3 Score=41.33 Aligned_cols=112 Identities=16% Similarity=0.175 Sum_probs=66.5
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCch-----hhHHHHHHHHHHhC-CCceEEecccc-----CcHHHHHHHHCCCCEEEE
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNS-----IYQIEMIKFIKKEY-PDMQVIGGNVL-----FGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~-----~~~l~~i~~i~~~~-~~vpvi~g~v~-----s~~~a~~l~~~Gvd~i~v 398 (590)
.....++.+++.|++.+.+..+.|.. +.-.+.++...+.. ..+||++|-.. +.+-++.+.++|+|++-+
T Consensus 37 ~l~~lv~~li~~Gv~gi~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv 116 (304)
T 3l21_A 37 TAARLANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKACAAEGAHGLLV 116 (304)
T ss_dssp HHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 44567888999999999988776643 22244555555543 36899987543 455567788899999955
Q ss_pred -cccccccCCCccccccchhHHH-HHHHHHhcCCCcEEec-----CCCCCHHHHHHHHH
Q psy1056 399 -IKFIKKEYPDMQVIGRNGTAVY-RVAEYASRRGVPVIAD-----GGVQSVGHVMKALA 450 (590)
Q Consensus 399 -~~~~~~~~~~~~~~g~~~~~l~-~~~~~~~~~~v~iia~-----GGi~~~~di~kala 450 (590)
.+.-.. .+...+. -....+...++|||.= .|+.=+.+..+.|+
T Consensus 117 ~~P~y~~---------~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La 166 (304)
T 3l21_A 117 VTPYYSK---------PPQRGLQAHFTAVADATELPMLLYDIPGRSAVPIEPDTIRALA 166 (304)
T ss_dssp ECCCSSC---------CCHHHHHHHHHHHHTSCSSCEEEEECHHHHSSCCCHHHHHHHH
T ss_pred CCCCCCC---------CCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHh
Confidence 211111 1222222 2344444456787752 25555555556665
|
| >3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7 | Back alignment and structure |
|---|
Probab=88.11 E-value=2.8 Score=41.73 Aligned_cols=96 Identities=7% Similarity=0.066 Sum_probs=62.4
Q ss_pred HHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcc-cccccCCCcccccc-chhHH-HHHHHHHhcCCCcEEecC
Q psy1056 361 MIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIK-FIKKEYPDMQVIGR-NGTAV-YRVAEYASRRGVPVIADG 437 (590)
Q Consensus 361 ~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~-~~~~~~~~~~~~g~-~~~~l-~~~~~~~~~~~v~iia~G 437 (590)
.++.+.+. +-|+++-++-+.-.|+.+.++|+|+|.++- .......|..+.+. +.+.+ ..++..+...++|||+|+
T Consensus 13 ~lr~l~~~--~~~i~~~~a~D~~sA~l~e~aGf~ai~vs~~s~a~~~~G~pD~~~vt~~em~~~~~~I~r~~~~PviaD~ 90 (298)
T 3eoo_A 13 KFRAAVAA--EQPLQVVGAITAYAAKMAEAVGFKAVYLSGGGVAANSLGIPDLGISTMDDVLVDANRITNATNLPLLVDI 90 (298)
T ss_dssp HHHHHHHH--SSSEEEEECSSHHHHHHHHHHTCSCEEECHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHCCSCEEEEC
T ss_pred HHHHHHhC--CCcEEEecCCCHHHHHHHHHcCCCEEEECcHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhhcCCeEEEEC
Confidence 45555555 457777788899999999999999998821 11100012444455 55543 345556556679999966
Q ss_pred --CCCCHHHHHH----HHHcCCCEEEE
Q psy1056 438 --GVQSVGHVMK----ALALGASTAMM 458 (590)
Q Consensus 438 --Gi~~~~di~k----alalGA~~v~~ 458 (590)
|..++.++.+ ....||.+|-+
T Consensus 91 d~Gyg~~~~v~~~v~~l~~aGaagv~i 117 (298)
T 3eoo_A 91 DTGWGGAFNIARTIRSFIKAGVGAVHL 117 (298)
T ss_dssp TTCSSSHHHHHHHHHHHHHTTCSEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHhCCeEEEE
Confidence 7667777654 34589999944
|
| >2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=88.07 E-value=2.9 Score=42.33 Aligned_cols=112 Identities=14% Similarity=0.011 Sum_probs=65.7
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCchh-----hHHHHHHHHHHhC-CCceEEecccc-----CcHHHHHHHHCCCCEEEE
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNSI-----YQIEMIKFIKKEY-PDMQVIGGNVL-----FGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~~-----~~l~~i~~i~~~~-~~vpvi~g~v~-----s~~~a~~l~~~Gvd~i~v 398 (590)
.....++.+++.|++.+.+..+.|... .-.+.++...+.. ..+||++|-.. +.+-++.+.++|+|++-+
T Consensus 56 ~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~Gadavlv 135 (332)
T 2r8w_A 56 AFSALIARLDAAEVDSVGILGSTGIYMYLTREERRRAIEAAATILRGRRTLMAGIGALRTDEAVALAKDAEAAGADALLL 135 (332)
T ss_dssp HHHHHHHHHHHHTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEECCSSHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 345678889999999999887666431 2245555555443 36899986544 345566777899999955
Q ss_pred -cccccccCCCccccccchhHHH-HHHHHHhcCCCcEEec-----CCCCCHHHHHHHHH
Q psy1056 399 -IKFIKKEYPDMQVIGRNGTAVY-RVAEYASRRGVPVIAD-----GGVQSVGHVMKALA 450 (590)
Q Consensus 399 -~~~~~~~~~~~~~~g~~~~~l~-~~~~~~~~~~v~iia~-----GGi~~~~di~kala 450 (590)
.+.-. ..+...+. -....+...++|||.= .|+.-+.+..+.|+
T Consensus 136 ~~P~Y~---------~~s~~~l~~~f~~VA~a~~lPiilYn~P~~tg~~l~~e~~~~La 185 (332)
T 2r8w_A 136 APVSYT---------PLTQEEAYHHFAAVAGATALPLAIYNNPTTTRFTFSDELLVRLA 185 (332)
T ss_dssp CCCCSS---------CCCHHHHHHHHHHHHHHCSSCEEEECCHHHHCCCCCHHHHHHHH
T ss_pred CCCCCC---------CCCHHHHHHHHHHHHHhcCCCEEEEeCccccCcCCCHHHHHHHH
Confidence 21111 11222222 2333444456887762 36654555555665
|
| >4e5t_A Mandelate racemase / muconate lactonizing enzyme, terminal domain protein; aldolase, structural genomics, biology; 2.90A {Labrenzia alexandrii} | Back alignment and structure |
|---|
Probab=88.06 E-value=3.6 Score=42.87 Aligned_cols=120 Identities=13% Similarity=0.014 Sum_probs=78.7
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCC------------chhhHHHHHHHHHHhC-CCceEEecccc--CcHHHH----HHH
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQG------------NSIYQIEMIKFIKKEY-PDMQVIGGNVL--FGYQPR----ATL 389 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G------------~~~~~l~~i~~i~~~~-~~vpvi~g~v~--s~~~a~----~l~ 389 (590)
+...+.++..++.|...+-+..... +...-++.++.+|+.+ ++.++++.--. +.++|. .|.
T Consensus 153 e~~~~~a~~~~~~G~~~~KlK~g~~~~~~~g~~~~~~~~~~d~~~v~avR~a~G~d~~l~vDan~~~~~~~A~~~~~~l~ 232 (404)
T 4e5t_A 153 DMAAEAAAKAVDQGFTAVKFDPAGAYTIYDGHQPSLEDLERSEAFCKQIRAAVGTKADLLFGTHGQFTVSGAKRLARRLE 232 (404)
T ss_dssp HHHHHHHHHHHHHTCSEEEECCSCCCBTTCSBCCCHHHHHHHHHHHHHHHHHHGGGSEEEECCCSCBCHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHcCCCEEeeCCCCCCcccccccccHHHHHHHHHHHHHHHHHcCCCCeEEEeCCCCcCHHHHHHHHHHHh
Confidence 3455667788888999998865321 1233477888899887 47888864222 666654 455
Q ss_pred HCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcC-CCEEEECccc
Q psy1056 390 LNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALG-ASTAMMGSLL 462 (590)
Q Consensus 390 ~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalG-A~~v~~g~~l 462 (590)
+.|+++| +- . +..+ ... ..++..+..++||++++.+.+..++.+++..| +|.+++-...
T Consensus 233 ~~~i~~i----Ee--P---~~~~--~~~---~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~d~~~ 292 (404)
T 4e5t_A 233 AYDPLWF----EE--P---IPPE--KPE---DMAEVARYTSIPVATGERLCTKYEFSRVLETGAASILQMNLGR 292 (404)
T ss_dssp GGCCSEE----EC--C---SCTT--CHH---HHHHHHHHCSSCEEECTTCCHHHHHHHHHHHTCCSEECCCTTT
T ss_pred hcCCcEE----EC--C---CCcc--cHH---HHHHHHhhCCCCEEeCCCcCCHHHHHHHHHhCCCCEEecCccc
Confidence 6899988 21 1 1100 222 23333344579999999999999999999988 5777665433
|
| >2o56_A Putative mandelate racemase; dehydratase, structural genomics, protein structure initiati 2; 2.00A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=88.02 E-value=3.8 Score=42.57 Aligned_cols=117 Identities=15% Similarity=0.078 Sum_probs=77.6
Q ss_pred hHHHHHHHHHHcCCcEEEEecC----CCc--------------hhhHHHHHHHHHHhC-CCceEEecc--ccCcHHHH--
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSS----QGN--------------SIYQIEMIKFIKKEY-PDMQVIGGN--VLFGYQPR-- 386 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~----~G~--------------~~~~l~~i~~i~~~~-~~vpvi~g~--v~s~~~a~-- 386 (590)
...+.+..+.+.|.+.+-+... .|. ....++.++.+++.+ +++++.+.- .-+.++|.
T Consensus 155 ~~~~~a~~~~~~Gf~~vKik~~~~~~~G~~~~s~~~~~~~~~~~~~~~e~v~avR~a~G~d~~l~vDan~~~~~~~a~~~ 234 (407)
T 2o56_A 155 QYAQAALTAVSEGYDAIKVDTVAMDRHGNWNQQNLNGPLTDKILRLGYDRMAAIRDAVGPDVDIIAEMHAFTDTTSAIQF 234 (407)
T ss_dssp HHHHHHHHHHHTTCSEEEECCSSBCTTSCBSCSCCCSSCCHHHHHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEcccccCCcCccccCcccCCCchhHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHH
Confidence 4456777788899999988753 243 134578888888876 578888642 22555554
Q ss_pred --HHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcC-CCEEEECc
Q psy1056 387 --ATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALG-ASTAMMGS 460 (590)
Q Consensus 387 --~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalG-A~~v~~g~ 460 (590)
.|.+.|+++| +-- +..+ ....+.+++ +..++||++++.+.+..++.+++..| +|.|++-.
T Consensus 235 ~~~l~~~~i~~i----E~P-----~~~~--~~~~~~~l~---~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~ 297 (407)
T 2o56_A 235 GRMIEELGIFYY----EEP-----VMPL--NPAQMKQVA---DKVNIPLAAGERIYWRWGYRPFLENGSLSVIQPDI 297 (407)
T ss_dssp HHHHGGGCCSCE----ECS-----SCSS--SHHHHHHHH---HHCCSCEEECTTCCHHHHHHHHHHTTCCSEECCCT
T ss_pred HHHHHhcCCCEE----eCC-----CChh--hHHHHHHHH---HhCCCCEEeCCCcCCHHHHHHHHHcCCCCEEecCc
Confidence 4555788877 211 1000 223333343 34579999999999999999999988 68886643
|
| >1vpx_A Protein (transaldolase (EC 2.2.1.2)); TM0295, structural genomics, JOI for structural genomics, JCSG; HET: GOL; 2.40A {Thermotoga maritima} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=88.00 E-value=1.5 Score=41.94 Aligned_cols=121 Identities=16% Similarity=0.138 Sum_probs=80.7
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCc
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDM 409 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~ 409 (590)
...+.++.+.+.. +-+.|-.+-- .+| +..++.+.++ ++++-+=-+.|.++|..+.++|++++ |+..+| .
T Consensus 77 ~mi~eA~~L~~~~-~nv~IKIP~T-~eG-l~Ai~~L~~e--GI~vNvTliFS~~QA~laa~AGa~~i--SpFVgR----i 145 (230)
T 1vpx_A 77 GMVREARELAQIS-EYVVIKIPMT-PDG-IKAVKTLSAE--GIKTNVTLVFSPAQAILAAKAGATYV--SPFVGR----M 145 (230)
T ss_dssp HHHHHHHHHHTTC-TTEEEEEESS-HHH-HHHHHHHHHT--TCCEEEEEECSHHHHHHHHHHTCSEE--EEBHHH----H
T ss_pred HHHHHHHHHHHhC-CCEEEEeCCC-HHH-HHHHHHHHHC--CCCEEEEEeCCHHHHHHHHhCCCeEE--Eeccch----h
Confidence 3445666666665 3344433211 122 6677778777 67776656779999999999999988 444444 3
Q ss_pred ccccc-chhHHHHHHHHHhcCC--CcEEecCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 410 QVIGR-NGTAVYRVAEYASRRG--VPVIADGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 410 ~~~g~-~~~~l~~~~~~~~~~~--v~iia~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
.+||. ....+.++..+.+.++ ..+++. ++|++.++..|..+|||.+-+...+
T Consensus 146 dd~g~dG~~~v~~i~~~~~~~~~~t~iL~A-S~r~~~~v~~~~l~G~d~~Tip~~~ 200 (230)
T 1vpx_A 146 DDLSNDGMRMLGEIVEIYNNYGFETEIIAA-SIRHPMHVVEAALMGVDIVTMPFAV 200 (230)
T ss_dssp HHTTSCHHHHHHHHHHHHHHHTCSCEEEEB-SCCSHHHHHHHHHHTCSEEEECHHH
T ss_pred hhccccHHHHHHHHHHHHHHcCCCeEEEee-ccCCHHHHHHHHHhCCCEEECCHHH
Confidence 55666 5555666666555443 445554 6999999999999999998777544
|
| >3eez_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, unknown function, PSI-2, protein structure initiative; 2.80A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=87.81 E-value=4.8 Score=41.43 Aligned_cols=116 Identities=12% Similarity=0.011 Sum_probs=78.7
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhC-CCceEEecc--ccCcHHHHHH----HHCCCCEEEEccc
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEY-PDMQVIGGN--VLFGYQPRAT----LLNFIYQIEMIKF 401 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~-~~vpvi~g~--v~s~~~a~~l----~~~Gvd~i~v~~~ 401 (590)
+...+.++.+.+.|.+.+-+.... +...-++.++.+++.+ |++++++.- .-+.++|.++ .+.|+ +| +
T Consensus 147 e~~~~~a~~~~~~G~~~iKiK~G~-~~~~d~~~v~avR~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i-~i----E 220 (378)
T 3eez_A 147 EETRAVIDRYRQRGYVAHSVKIGG-DVERDIARIRDVEDIREPGEIVLYDVNRGWTRQQALRVMRATEDLHV-MF----E 220 (378)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCS-CHHHHHHHHHHHTTSCCTTCEEEEECTTCCCHHHHHHHHHHTGGGTC-CE----E
T ss_pred HHHHHHHHHHHhCCCCEEEeccCC-CHHHHHHHHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHhccCCe-EE----e
Confidence 345567777888999998887643 3445578888899888 578888642 2266666544 34666 66 2
Q ss_pred ccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcC-CCEEEECccc
Q psy1056 402 IKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALG-ASTAMMGSLL 462 (590)
Q Consensus 402 ~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalG-A~~v~~g~~l 462 (590)
.. +. .....++.....++||++++-+.+..|+.+++..| +|.|++....
T Consensus 221 --qP---~~-------~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~ik~~~ 270 (378)
T 3eez_A 221 --QP---GE-------TLDDIAAIRPLHSAPVSVDECLVTLQDAARVARDGLAEVFGIKLNR 270 (378)
T ss_dssp --CC---SS-------SHHHHHHTGGGCCCCEEECTTCCSHHHHHHHHHTTCCSEEEEEHHH
T ss_pred --cC---CC-------CHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHcCCCCEEEeCchh
Confidence 11 11 12233444445679999999999999999999987 6888776433
|
| >3my9_A Muconate cycloisomerase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics, nysgx; 2.20A {Azorhizobium caulinodans} | Back alignment and structure |
|---|
Probab=87.78 E-value=3.7 Score=42.27 Aligned_cols=117 Identities=15% Similarity=0.147 Sum_probs=77.6
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhC-CCceEEec-ccc-CcHHH----HHHHHCCCCEEEEcccc
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEY-PDMQVIGG-NVL-FGYQP----RATLLNFIYQIEMIKFI 402 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~-~~vpvi~g-~v~-s~~~a----~~l~~~Gvd~i~v~~~~ 402 (590)
...+.+...++.|...+-+.........-++.++.+++.+ |++++++. |.. +.++| +.|.+.|+++| +-
T Consensus 149 ~~~~~a~~~~~~G~~~~K~Kvg~~~~~~d~~~v~avR~~~g~~~~l~vDan~~~~~~~A~~~~~~l~~~~i~~i----Eq 224 (377)
T 3my9_A 149 ADLERMRAMVPAGHTVFKMKTGVKPHAEELRILETMRGEFGERIDLRLDFNQALTPFGAMKILRDVDAFRPTFI----EQ 224 (377)
T ss_dssp HHHHHHHHHTTTTCCEEEEECSSSCHHHHHHHHHHHHHHHGGGSEEEEECTTCCCTTTHHHHHHHHHTTCCSCE----EC
T ss_pred HHHHHHHHHHHcCCCEEEEccCCCcHHHHHHHHHHHHHHhCCCCeEEEeCCCCcCHHHHHHHHHHHhhcCCCEE----EC
Confidence 3445666777789999888765444445578888999887 57888764 222 55544 45666888888 21
Q ss_pred cccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcC-CCEEEECc
Q psy1056 403 KKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALG-ASTAMMGS 460 (590)
Q Consensus 403 ~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalG-A~~v~~g~ 460 (590)
. +... ... ..++.....++||.+++-+.+..|+.+++..| +|.+++-.
T Consensus 225 --P---~~~~--d~~---~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~~k~ 273 (377)
T 3my9_A 225 --P---VPRR--HLD---AMAGFAAALDTPILADESCFDAVDLMEVVRRQAADAISVKI 273 (377)
T ss_dssp --C---SCTT--CHH---HHHHHHHHCSSCEEESTTCSSHHHHHHHHHHTCCSEEECCH
T ss_pred --C---CCcc--CHH---HHHHHHHhCCCCEEECCccCCHHHHHHHHHcCCCCEEEecc
Confidence 1 1100 222 33333344579999999999999999999887 67776653
|
| >3sjn_A Mandelate racemase/muconate lactonizing protein; enolase, magnesium binding site, lyase; 1.90A {Shewanella pealeana} | Back alignment and structure |
|---|
Probab=87.76 E-value=7.2 Score=40.02 Aligned_cols=118 Identities=8% Similarity=-0.004 Sum_probs=80.7
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCC--CchhhHHHHHHHHHHhC-CCceEEeccc--cC-cHHHHH----HHHCCCCEEEE
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQ--GNSIYQIEMIKFIKKEY-PDMQVIGGNV--LF-GYQPRA----TLLNFIYQIEM 398 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~--G~~~~~l~~i~~i~~~~-~~vpvi~g~v--~s-~~~a~~----l~~~Gvd~i~v 398 (590)
+...+.++..++.|.+.+-+.... ++...-++.++.+|+.+ |++++++.-= -+ .++|.+ |.+.|+++|
T Consensus 148 e~~~~~a~~~~~~Gf~~iKlk~g~~g~~~~~d~~~v~avR~a~g~~~~l~vDan~~~~d~~~A~~~~~~l~~~~i~~i-- 225 (374)
T 3sjn_A 148 EDNVAIVQGLKDQGFSSIKFGGGVMGDDPDTDYAIVKAVREAAGPEMEVQIDLASKWHTCGHSAMMAKRLEEFNLNWI-- 225 (374)
T ss_dssp GGGHHHHHHHHTTTCSEEEEECTTTTSCHHHHHHHHHHHHHHHCSSSEEEEECTTTTCSHHHHHHHHHHSGGGCCSEE--
T ss_pred HHHHHHHHHHHHcCCCEEEeccCCCCCCHHHHHHHHHHHHHHhCCCCeEEEECCCCCCCHHHHHHHHHHhhhcCceEE--
Confidence 456677888889999999988753 34566688899999886 5788886422 26 667654 444788888
Q ss_pred cccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcC-CCEEEECc
Q psy1056 399 IKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALG-ASTAMMGS 460 (590)
Q Consensus 399 ~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalG-A~~v~~g~ 460 (590)
+- . +..+ .... .++..+..++||++++-+.+..++.+++..| +|.+++-.
T Consensus 226 --Eq--P---~~~~--~~~~---~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k~ 276 (374)
T 3sjn_A 226 --EE--P---VLAD--SLIS---YEKLSRQVSQKIAGGESLTTRYEFQEFITKSNADIVQPDI 276 (374)
T ss_dssp --EC--S---SCTT--CHHH---HHHHHHHCSSEEEECTTCCHHHHHHHHHHHHCCSEECCBT
T ss_pred --EC--C---CCcc--cHHH---HHHHHhhCCCCEEeCCCcCCHHHHHHHHHcCCCCEEEeCc
Confidence 21 1 1100 2222 3333334579999999999999999999875 67776544
|
| >3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=87.75 E-value=4.1 Score=40.48 Aligned_cols=112 Identities=16% Similarity=0.149 Sum_probs=65.6
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCch-----hhHHHHHHHHHHhC-CCceEEecccc-----CcHHHHHHHHCCCCEEEE
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNS-----IYQIEMIKFIKKEY-PDMQVIGGNVL-----FGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~-----~~~l~~i~~i~~~~-~~vpvi~g~v~-----s~~~a~~l~~~Gvd~i~v 398 (590)
.....++.+++.|++.+.+..+.|.. +.-.+.++...+.. ..+||++|-.. +.+-++.+.++|+|++-+
T Consensus 29 ~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv 108 (297)
T 3flu_A 29 QLRDLIDWHIENGTDGIVAVGTTGESATLSVEEHTAVIEAVVKHVAKRVPVIAGTGANNTVEAIALSQAAEKAGADYTLS 108 (297)
T ss_dssp HHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHHcCCCEEEE
Confidence 44567888999999999998776643 22234555554433 36899986544 345567788899999954
Q ss_pred -cccccccCCCccccccchhHHH-HHHHHHhcCCCcEEec-----CCCCCHHHHHHHHH
Q psy1056 399 -IKFIKKEYPDMQVIGRNGTAVY-RVAEYASRRGVPVIAD-----GGVQSVGHVMKALA 450 (590)
Q Consensus 399 -~~~~~~~~~~~~~~g~~~~~l~-~~~~~~~~~~v~iia~-----GGi~~~~di~kala 450 (590)
.+.-.. .+...+. -....+...++||+.= .|+.-+.+..+.|+
T Consensus 109 ~~P~y~~---------~~~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La 158 (297)
T 3flu_A 109 VVPYYNK---------PSQEGIYQHFKTIAEATSIPMIIYNVPGRTVVSMTNDTILRLA 158 (297)
T ss_dssp ECCCSSC---------CCHHHHHHHHHHHHHHCCSCEEEEECHHHHSSCCCHHHHHHHT
T ss_pred CCCCCCC---------CCHHHHHHHHHHHHHhCCCCEEEEECCchhccCCCHHHHHHHH
Confidence 221111 1212222 2333444456887762 25555555655664
|
| >3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=87.72 E-value=2.8 Score=42.11 Aligned_cols=69 Identities=14% Similarity=0.062 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCch-----hhHHHHHHHHHHhCCCceEEecccc-----CcHHHHHHHHCCCCEEEE
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNS-----IYQIEMIKFIKKEYPDMQVIGGNVL-----FGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~-----~~~l~~i~~i~~~~~~vpvi~g~v~-----s~~~a~~l~~~Gvd~i~v 398 (590)
.....++.+++.|++.+.+..+.|.. +.-.+.++...+....+||++|-.. +.+-++.+.++|+|++-+
T Consensus 30 ~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Lt~~Er~~v~~~~v~~~grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv 108 (313)
T 3dz1_A 30 SIDRLTDFYAEVGCEGVTVLGILGEAPKLDAAEAEAVATRFIKRAKSMQVIVGVSAPGFAAMRRLARLSMDAGAAGVMI 108 (313)
T ss_dssp HHHHHHHHHHHTTCSEEEESTGGGTGGGSCHHHHHHHHHHHHHHCTTSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHHCCCCEEEeCccCcChhhCCHHHHHHHHHHHHHHcCCCcEEEecCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 44567888999999999987666543 2224555555555457999986554 445567778899999965
|
| >2gl5_A Putative dehydratase protein; structural genomics, protein structure initiati nysgxrc; 1.60A {Salmonella typhimurium} SCOP: c.1.11.2 d.54.1.1 PDB: 4e6m_A* | Back alignment and structure |
|---|
Probab=87.71 E-value=4.6 Score=42.02 Aligned_cols=117 Identities=13% Similarity=0.068 Sum_probs=77.1
Q ss_pred hHHHHHHHHHHcCCcEEEEecC----CCc-------------------hhhHHHHHHHHHHhC-CCceEEecc--ccCcH
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSS----QGN-------------------SIYQIEMIKFIKKEY-PDMQVIGGN--VLFGY 383 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~----~G~-------------------~~~~l~~i~~i~~~~-~~vpvi~g~--v~s~~ 383 (590)
...+.+..+.+.|.+.+-+... .|. ....++.++.+++.+ +++++.+.- .-+.+
T Consensus 153 ~~~~~a~~~~~~Gf~~vKik~~~~~~~G~~~~~~~~~~~~GG~~~~~~~~~~~e~v~avR~a~G~d~~l~vDan~~~~~~ 232 (410)
T 2gl5_A 153 EYAEAARAALDDGYDAIKVDPLEIDRNGDDCVFQNRNRNYSGLLLADQLKMGEARIAAMREAMGDDADIIVEIHSLLGTN 232 (410)
T ss_dssp HHHHHHHHHHHTTCSEEEECSSSBCTTSCBTTTSSCCGGGGSCCCHHHHHHHHHHHHHHHHHHCSSSEEEEECTTCSCHH
T ss_pred HHHHHHHHHHHcCCCEEEEeccccCCcccccccccccccccCccchhHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHH
Confidence 4456777788899999998753 343 133568888888876 578888642 22566
Q ss_pred HHH----HHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcC-CCEEEE
Q psy1056 384 QPR----ATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALG-ASTAMM 458 (590)
Q Consensus 384 ~a~----~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalG-A~~v~~ 458 (590)
+|. .|.+.|+++| +-- +... ....+.+++ +..++||++++.+.+..++.+++..| +|.|++
T Consensus 233 ~ai~~~~~l~~~~i~~i----E~P-----~~~~--~~~~~~~l~---~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~i 298 (410)
T 2gl5_A 233 SAIQFAKAIEKYRIFLY----EEP-----IHPL--NSDNMQKVS---RSTTIPIATGERSYTRWGYRELLEKQSIAVAQP 298 (410)
T ss_dssp HHHHHHHHHGGGCEEEE----ECS-----SCSS--CHHHHHHHH---HHCSSCEEECTTCCTTHHHHHHHHTTCCSEECC
T ss_pred HHHHHHHHHHhcCCCeE----ECC-----CChh--hHHHHHHHH---hhCCCCEEecCCcCCHHHHHHHHHcCCCCEEec
Confidence 654 4445777777 211 1000 223333343 34579999999999999999999988 688866
Q ss_pred Cc
Q psy1056 459 GS 460 (590)
Q Consensus 459 g~ 460 (590)
-.
T Consensus 299 k~ 300 (410)
T 2gl5_A 299 DL 300 (410)
T ss_dssp CT
T ss_pred Cc
Confidence 43
|
| >3rr1_A GALD, putative D-galactonate dehydratase; enolase, magnesium binding site, lyase; 1.95A {Ralstonia pickettii} PDB: 3rra_A | Back alignment and structure |
|---|
Probab=87.46 E-value=4.8 Score=41.91 Aligned_cols=118 Identities=13% Similarity=0.017 Sum_probs=77.2
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCC--------chhhHHHHHHHHHHhC-CCceEEecc--ccCcHHHH----HHHHCCC
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQG--------NSIYQIEMIKFIKKEY-PDMQVIGGN--VLFGYQPR----ATLLNFI 393 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G--------~~~~~l~~i~~i~~~~-~~vpvi~g~--v~s~~~a~----~l~~~Gv 393 (590)
+...+.++..++.|...+-+....+ ....-++.++.+|+.+ |++++++.- .-+.++|. .|.+.|+
T Consensus 127 e~~~~~a~~~~~~G~~~iKl~G~~~~~~~~~~~~~~~d~e~v~avR~avG~d~~L~vDaN~~~~~~~A~~~~~~L~~~~i 206 (405)
T 3rr1_A 127 ADVIAGMKALQAGGFDHFKLNGCEEMGIIDTSRAVDAAVARVAEIRSAFGNTVEFGLDFHGRVSAPMAKVLIKELEPYRP 206 (405)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESCCSSSCBCSHHHHHHHHHHHHHHHHTTGGGSEEEEECCSCBCHHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCcccccccchhHHHHHHHHHHHHHHhCCCceEEEECCCCCCHHHHHHHHHHHHhcCC
Confidence 3455677788889999887722211 1233478889999988 578888632 22666654 4556888
Q ss_pred CEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcC-CCEEEECc
Q psy1056 394 YQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALG-ASTAMMGS 460 (590)
Q Consensus 394 d~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalG-A~~v~~g~ 460 (590)
++| +- . +... ... ..++..+..++||++++.+.+..++.+++..| +|.+++-.
T Consensus 207 ~~i----Ee--P---~~~~--d~~---~~~~l~~~~~iPIa~dE~i~~~~~~~~~l~~~a~d~v~~d~ 260 (405)
T 3rr1_A 207 LFI----EE--P---VLAE--QAE---TYARLAAHTHLPIAAGERMFSRFDFKRVLEAGGVSILQPDL 260 (405)
T ss_dssp SCE----EC--S---SCCS--STH---HHHHHHTTCSSCEEECTTCCSHHHHHHHHHHCCCSEECCBT
T ss_pred CEE----EC--C---CCcc--cHH---HHHHHHhcCCCCEEecCCcCCHHHHHHHHHHhCCCeEEECh
Confidence 888 21 1 1000 222 23444445679999999999999999999886 67876643
|
| >2vp8_A Dihydropteroate synthase 2; RV1207 transferase, folate biosynthesis, antibiotic resistance; 2.64A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=87.40 E-value=3.6 Score=41.28 Aligned_cols=67 Identities=16% Similarity=0.238 Sum_probs=50.3
Q ss_pred hhHHHHHHHHHHcCCcEEEEecC---CCch-------hhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEE
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSS---QGNS-------IYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQI 396 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~---~G~~-------~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i 396 (590)
+...+.+..+++.|+++|-|... -|.. ..++..++.+++.+|++|+.+ +....+.++.++++|++.|
T Consensus 65 ~~a~~~A~~~v~~GAdIIDIGgeSTrPG~~v~~~eEl~Rv~pvI~~l~~~~~~vpISI-DT~~~~VaeaAl~aGa~iI 141 (318)
T 2vp8_A 65 AAARDAVHRAVADGADVIDVGGVKAGPGERVDVDTEITRLVPFIEWLRGAYPDQLISV-DTWRAQVAKAACAAGADLI 141 (318)
T ss_dssp HHHHHHHHHHHHTTCSEEEEC----------CHHHHHHHHHHHHHHHHHHSTTCEEEE-ECSCHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEE-eCCCHHHHHHHHHhCCCEE
Confidence 45667889999999999988641 1211 124556788888877889877 7778999999999999988
|
| >2qq6_A Mandelate racemase/muconate lactonizing enzyme- like protein; enolase, Mg ION, PSI-2, NYSGXRC, structural genomics; 2.90A {Rubrobacter xylanophilus dsm 9941} | Back alignment and structure |
|---|
Probab=87.35 E-value=6.9 Score=40.67 Aligned_cols=115 Identities=12% Similarity=0.015 Sum_probs=76.9
Q ss_pred hHHHHHHHHHHcCCcEEEEecC--CCc--------------hhhHHHHHHHHHHhC-CCceEEecc--ccCcHHHHH---
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSS--QGN--------------SIYQIEMIKFIKKEY-PDMQVIGGN--VLFGYQPRA--- 387 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~--~G~--------------~~~~l~~i~~i~~~~-~~vpvi~g~--v~s~~~a~~--- 387 (590)
...+.+..+.+.|.+.+-+... .|. ....++.++.+++.+ +++++.+.- .-+.++|.+
T Consensus 152 ~~~~~a~~~~~~Gf~~vKik~~~~~G~~~~~~~G~~~~~~~~~~~~e~v~avRea~G~d~~l~vDan~~~~~~~a~~~~~ 231 (410)
T 2qq6_A 152 EYIAVAREAVERGFDAIKLDVDDITGPLHRDFWNGAISPREHEAMVARVAAVREAVGPEVEVAIDMHGRFDIPSSIRFAR 231 (410)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCCSSSTTCSCSSSCCCCHHHHHHHHHHHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEeeccccCCcccCCcCccccchhhHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHH
Confidence 4456777888899999988763 232 134578888888876 578887632 226666644
Q ss_pred -HHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcC-CCEEEE
Q psy1056 388 -TLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALG-ASTAMM 458 (590)
Q Consensus 388 -l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalG-A~~v~~ 458 (590)
|.+.|+++| +-- + ....+...++..+..++||++++.+.+..++.+++..| +|.+++
T Consensus 232 ~l~~~~i~~i----EeP-----~-----~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~i 290 (410)
T 2qq6_A 232 AMEPFGLLWL----EEP-----T-----PPENLDALAEVRRSTSTPICAGENVYTRFDFRELFAKRAVDYVMP 290 (410)
T ss_dssp HHGGGCCSEE----ECC-----S-----CTTCHHHHHHHHTTCSSCEEECTTCCSHHHHHHHHHTTCCSEECC
T ss_pred HHhhcCCCeE----ECC-----C-----ChhhHHHHHHHHhhCCCCEEeCCCcCCHHHHHHHHHcCCCCEEec
Confidence 455788887 211 1 01112233334344579999999999999999999987 688866
|
| >2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=87.34 E-value=2.3 Score=41.30 Aligned_cols=66 Identities=11% Similarity=0.076 Sum_probs=45.5
Q ss_pred HHHHHHHHcCCcEEEEecC-CCchhh--HHHHHHHHHHhCCC-ceEE-eccccCcHHHHHHHHCCCCEEEE
Q psy1056 333 NRLKLLSQAGVDVVILDSS-QGNSIY--QIEMIKFIKKEYPD-MQVI-GGNVLFGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 333 e~~~~li~~gad~i~V~~~-~G~~~~--~l~~i~~i~~~~~~-vpvi-~g~v~s~~~a~~l~~~Gvd~i~v 398 (590)
..++.+.+.|++++.--.+ -|...+ -...++.+++..++ +||| .|+|.++++|..+.++|+|++-|
T Consensus 136 ~~ak~l~~~G~~aVmPlg~pIGsG~Gi~~~~~L~~i~~~~~~~vPVI~~GGI~tpsDAa~AmeLGAdgVlV 206 (268)
T 2htm_A 136 VLAKRLAALGTATVMPLAAPIGSGWGVRTRALLELFAREKASLPPVVVDAGLGLPSHAAEVMELGLDAVLV 206 (268)
T ss_dssp HHHHHHHHHTCSCBEEBSSSTTTCCCSTTHHHHHHHHHTTTTSSCBEEESCCCSHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHhcCCCEEEecCccCcCCcccCCHHHHHHHHHhcCCCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 5566677788888743121 122211 14567888873446 8888 57888999999999999999955
|
| >3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=87.32 E-value=1.2 Score=45.92 Aligned_cols=91 Identities=16% Similarity=0.135 Sum_probs=51.8
Q ss_pred HhCCCceEEecccc---CcHHHHHHH-HCCCCEEEEcccccccCCCcccccc-chh-HHHHHHHHHhcCCCcEEecCCC-
Q psy1056 367 KEYPDMQVIGGNVL---FGYQPRATL-LNFIYQIEMIKFIKKEYPDMQVIGR-NGT-AVYRVAEYASRRGVPVIADGGV- 439 (590)
Q Consensus 367 ~~~~~vpvi~g~v~---s~~~a~~l~-~~Gvd~i~v~~~~~~~~~~~~~~g~-~~~-~l~~~~~~~~~~~v~iia~GGi- 439 (590)
+..|+.++++ +++ +.+.+++++ .+|+|++.+.+...++. ...-|- ... .+..+....+..++|||+-| +
T Consensus 140 r~~P~~~~ia-nig~~~~~e~~~~~ve~~~adal~ihln~~qe~--~~p~Gd~~~~~~~~~I~~l~~~~~~PVivK~-vg 215 (365)
T 3sr7_A 140 KSRPHLLLAT-NIGLDKPYQAGLQAVRDLQPLFLQVHINLMQEL--LMPEGEREFRSWKKHLSDYAKKLQLPFILKE-VG 215 (365)
T ss_dssp -----CCEEE-EEETTSCHHHHHHHHHHHCCSCEEEEECHHHHH--TSSSSCCCCHHHHHHHHHHHHHCCSCEEEEE-CS
T ss_pred hhCCCCcEEE-EeCCCCCHHHHHHHHHhcCCCEEEEeccccccc--cCCCCCCcHHHHHHHHHHHHHhhCCCEEEEE-CC
Confidence 3347787763 444 566666666 68999997622211100 001122 221 12234444444579999963 6
Q ss_pred --CCHHHHHHHHHcCCCEEEECcc
Q psy1056 440 --QSVGHVMKALALGASTAMMGSL 461 (590)
Q Consensus 440 --~~~~di~kalalGA~~v~~g~~ 461 (590)
.++.++.++..+|||++.++..
T Consensus 216 ~g~s~e~A~~l~~aGad~I~V~g~ 239 (365)
T 3sr7_A 216 FGMDVKTIQTAIDLGVKTVDISGR 239 (365)
T ss_dssp SCCCHHHHHHHHHHTCCEEECCCB
T ss_pred CCCCHHHHHHHHHcCCCEEEEeCC
Confidence 6899999999999999987643
|
| >3mqt_A Mandelate racemase/muconate lactonizing protein; PSI-II, NYSGXRC, muconate lactonizing EN structural genomics, protein structure initiative; 2.10A {Shewanella pealeana} | Back alignment and structure |
|---|
Probab=87.29 E-value=4.3 Score=42.11 Aligned_cols=117 Identities=10% Similarity=-0.094 Sum_probs=76.9
Q ss_pred HHHHHHHHHcCCcEEEEe-cCC--CchhhHHHHHHHHHHhC-CCceEEecc--cc-CcHHHHH----HHHCCCCEEEEcc
Q psy1056 332 KNRLKLLSQAGVDVVILD-SSQ--GNSIYQIEMIKFIKKEY-PDMQVIGGN--VL-FGYQPRA----TLLNFIYQIEMIK 400 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~-~~~--G~~~~~l~~i~~i~~~~-~~vpvi~g~--v~-s~~~a~~----l~~~Gvd~i~v~~ 400 (590)
.+.++..++.|...+-++ ... .+...-++.++.+++.+ |+.++++.- .- +.++|.+ |.+.|+++|
T Consensus 157 ~~~a~~~~~~G~~~~K~~k~g~~~~~~~~d~~~v~avR~a~G~d~~l~vDan~~~~~~~~A~~~~~~L~~~~i~~i---- 232 (394)
T 3mqt_A 157 KPLIAKAKERGAKAVKVCIIPNDKVSDKEIVAYLRELREVIGWDMDMMVDCLYRWTDWQKARWTFRQLEDIDLYFI---- 232 (394)
T ss_dssp HHHHHHHHHTTCSEEEEECCCCTTSCHHHHHHHHHHHHHHHCSSSEEEEECTTCCSCHHHHHHHHHHTGGGCCSEE----
T ss_pred HHHHHHHHHcCCCEEEecccCCCccCHHHHHHHHHHHHHHhCCCCeEEEECCCCCCCHHHHHHHHHHHhhcCCeEE----
Confidence 346777888999998883 332 23445678899999887 578888642 22 4565544 445788888
Q ss_pred cccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcC-CCEEEECccc
Q psy1056 401 FIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALG-ASTAMMGSLL 462 (590)
Q Consensus 401 ~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalG-A~~v~~g~~l 462 (590)
+- . +... .... .++..+..++||++++.+.+..++.+++..| +|.|++-...
T Consensus 233 Ee--P---~~~~--~~~~---~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k~~~ 285 (394)
T 3mqt_A 233 EA--C---LQHD--DLIG---HQKLAAAINTRLCGAEMSTTRFEAQEWLEKTGISVVQSDYNR 285 (394)
T ss_dssp ES--C---SCTT--CHHH---HHHHHHHSSSEEEECTTCCHHHHHHHHHHHHCCSEECCCTTT
T ss_pred EC--C---CCcc--cHHH---HHHHHhhCCCCEEeCCCcCCHHHHHHHHHcCCCCeEecCccc
Confidence 21 1 1100 2222 3333334579999999999999999999886 7888665433
|
| >1a3w_A Pyruvate kinase; allosteric regulation, tranferase, transfer; HET: FBP; 3.00A {Saccharomyces cerevisiae} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1a3x_A | Back alignment and structure |
|---|
Probab=87.24 E-value=34 Score=36.44 Aligned_cols=120 Identities=16% Similarity=0.106 Sum_probs=66.5
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHH---HHHCCCCEEEE-----ccc
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRA---TLLNFIYQIEM-----IKF 401 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~---l~~~Gvd~i~v-----~~~ 401 (590)
...+-+...++.|++.+.+--.+. .+.+.+..+.+.+.-..+++++ -+-+++.... .+++ +|+|-| +.+
T Consensus 194 ~D~~DI~~~l~~g~d~I~lpfV~s-aeDv~~~~~~l~~~~~~i~Iia-kIEt~eav~nldeI~~~-~DgImvgrgDLgve 270 (500)
T 1a3w_A 194 KDKEDLRFGVKNGVHMVFASFIRT-ANDVLTIREVLGEQGKDVKIIV-KIENQQGVNNFDEILKV-TDGVMVARGDLGIE 270 (500)
T ss_dssp HHHHHHHHHHHHTCSEEEECSCCS-HHHHHHHHHHHHHHHTTSEEEE-EECSSHHHHSHHHHHHH-SSEEEECHHHHHHH
T ss_pred hHHHHHHHHHHcCCCEEEECCCCC-HHHHHHHHHHHHhcCCCcEEEE-EECChHHHHhHHHHHHh-CCEEEECchHhhhh
Confidence 344556778889999998744332 2333333344433323566665 4455544433 3333 688855 111
Q ss_pred ccccCCCccccccchhHHHHHHHHHhcCCCcEEe---------cCCCCCH---HHHHHHHHcCCCEEEECc
Q psy1056 402 IKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIA---------DGGVQSV---GHVMKALALGASTAMMGS 460 (590)
Q Consensus 402 ~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia---------~GGi~~~---~di~kalalGA~~v~~g~ 460 (590)
.... . -+.....+...|...++|+|. ....-+- .|++.|+..|+|+||++.
T Consensus 271 lg~~-----~---v~~aqk~ii~aaraaGkpvi~ATQMLeSMi~~~~ptraEvsdva~av~~G~d~vmLs~ 333 (500)
T 1a3w_A 271 IPAP-----E---VLAVQKKLIAKSNLAGKPVICATQMLESMTYNPRPTRAEVSDVGNAILDGADCVMLSG 333 (500)
T ss_dssp TTGG-----G---HHHHHHHHHHHHHHHTCCEEECSSTTGGGGSCSSCCHHHHHHHHHHHHHTCSEECBST
T ss_pred cCcH-----H---HHHHHHHHHHHHHhcCCCEEEEeehhhhhccCCCchHHHHHHHHHHHHhCCCEEEecc
Confidence 1111 0 122233444555566899985 2332221 299999999999999873
|
| >3ndo_A Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; HET: GOL; 1.25A {Mycobacterium smegmatis} PDB: 3ng3_A | Back alignment and structure |
|---|
Probab=87.10 E-value=2.9 Score=39.96 Aligned_cols=123 Identities=9% Similarity=0.043 Sum_probs=71.3
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEE--ecccc-------CcHHHHHHHHCCCCEEEEcc
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVI--GGNVL-------FGYQPRATLLNFIYQIEMIK 400 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi--~g~v~-------s~~~a~~l~~~Gvd~i~v~~ 400 (590)
+..+..+...+.|+..++|+.. ++...+.++.. ++.+. ++.-. -..+++++++.|||-||+-+
T Consensus 30 ~i~~lc~eA~~~~~~aVcV~p~------~v~~a~~l~~~--~v~v~tVigFP~G~~~~~~K~~E~~~Ai~~GAdEIDmVi 101 (231)
T 3ndo_A 30 DVTALVDEAADLGVFAVCVSPP------LVSVAAGVAPS--GLAIAAVAGFPSGKHVPGIKATEAELAVAAGATEIDMVI 101 (231)
T ss_dssp HHHHHHHHHHHHTCSEEEECGG------GHHHHHHHCCT--TCEEEEEESTTTCCSCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred HHHHHHHHHHHhCCcEEEECHH------HHHHHHHhcCC--CCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEEe
Confidence 4445677777889999998443 12222233211 33332 22111 13477889999999999843
Q ss_pred cccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCC----CHHHHHHH----HHcCCCEEEECccc
Q psy1056 401 FIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQ----SVGHVMKA----LALGASTAMMGSLL 462 (590)
Q Consensus 401 ~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~----~~~di~ka----lalGA~~v~~g~~l 462 (590)
..+..++ ..|.....-+..+.++|...-+.+|..-|.. +..++.+| ..+|||+|=-.+-|
T Consensus 102 nig~lk~--g~~~~v~~ei~~v~~a~~~~~lKvIiEt~~L~~~~t~eei~~a~~ia~~aGADfVKTSTGf 169 (231)
T 3ndo_A 102 DVGAALA--GDLDAVSADITAVRKAVRAATLKVIVESAALLEFSGEPLLADVCRVARDAGADFVKTSTGF 169 (231)
T ss_dssp CHHHHHT--TCHHHHHHHHHHHHHHTTTSEEEEECCHHHHHHHTCHHHHHHHHHHHHHTTCSEEECCCSC
T ss_pred ehHhhhc--ccHHHHHHHHHHHHHHccCCceEEEEECcccCCCCCHHHHHHHHHHHHHHCcCEEEcCCCC
Confidence 3322100 1122233345566666654346788887888 89888874 45799999444433
|
| >2ox4_A Putative mandelate racemase; enolase, dehydratase, structural genomics, protein structure initiative, PSI, nysgrc; 1.80A {Zymomonas mobilis} | Back alignment and structure |
|---|
Probab=87.01 E-value=4.1 Score=42.24 Aligned_cols=116 Identities=15% Similarity=0.050 Sum_probs=76.6
Q ss_pred hHHHHHHHHHHcCCcEEEEecC----CCc--------------hhhHHHHHHHHHHhC-CCceEEecc--ccCcHHHH--
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSS----QGN--------------SIYQIEMIKFIKKEY-PDMQVIGGN--VLFGYQPR-- 386 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~----~G~--------------~~~~l~~i~~i~~~~-~~vpvi~g~--v~s~~~a~-- 386 (590)
...+.+..+.+.|.+.+-+... .|. .....+.++.+++.. +++++.+.- .-+.++|.
T Consensus 149 ~~~~~a~~~~~~Gf~~vKik~~~~~~~G~~~~s~~~g~~~~~~~~~~~e~v~avr~avG~d~~l~vDan~~~~~~~ai~~ 228 (403)
T 2ox4_A 149 EYAEEALKAVAEGYDAVKVDVLAHDRNGSREGVFLEGPLPSETIKIGVERVEAIRNAVGPDVDIIVENHGHTDLVSAIQF 228 (403)
T ss_dssp HHHHHHHHHHHTTCSEEEECCSSSCTTSCCTTCCCSSSCCHHHHHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEeccccCCccccccCcccCCCchHHHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHH
Confidence 4456777788899999988753 343 134578888888876 578888642 22556654
Q ss_pred --HHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcC-CCEEEEC
Q psy1056 387 --ATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALG-ASTAMMG 459 (590)
Q Consensus 387 --~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalG-A~~v~~g 459 (590)
.|.+.|+++| +-- +..+ ....+.+++ +..++||++++.+.+..++.+++..| +|.|++-
T Consensus 229 ~~~l~~~~i~~i----E~P-----~~~~--d~~~~~~l~---~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik 290 (403)
T 2ox4_A 229 AKAIEEFNIFFY----EEI-----NTPL--NPRLLKEAK---KKIDIPLASGERIYSRWGFLPFLEDRSIDVIQPD 290 (403)
T ss_dssp HHHHGGGCEEEE----ECC-----SCTT--STHHHHHHH---HTCCSCEEECTTCCHHHHHHHHHHTTCCSEECCC
T ss_pred HHHHHhhCCCEE----eCC-----CChh--hHHHHHHHH---HhCCCCEEecCCcCCHHHHHHHHHcCCCCEEecC
Confidence 4445777777 211 1100 222233333 34579999999999999999999987 6888764
|
| >3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=86.98 E-value=3.5 Score=41.37 Aligned_cols=69 Identities=13% Similarity=0.017 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCchh-----hHHHHHHHHHHhC-CCceEEecccc-----CcHHHHHHHHCCCCEEEE
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNSI-----YQIEMIKFIKKEY-PDMQVIGGNVL-----FGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~~-----~~l~~i~~i~~~~-~~vpvi~g~v~-----s~~~a~~l~~~Gvd~i~v 398 (590)
.....++.+++.|++.+.+..+.|... .-.+.++...+.. ..+||++|-.. +.+-++.+.++|+|++-+
T Consensus 44 ~l~~li~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~st~~ai~la~~A~~~Gadavlv 123 (315)
T 3si9_A 44 AFCNFVEWQITQGINGVSPVGTTGESPTLTHEEHKRIIELCVEQVAKRVPVVAGAGSNSTSEAVELAKHAEKAGADAVLV 123 (315)
T ss_dssp HHHHHHHHHHHTTCSEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHcCCCEEEeCccccCccccCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 445678889999999999877766432 2234555555433 36899986544 345567788899999955
|
| >2poz_A Putative dehydratase; octamer, structural genomics, P protein structure initiative, NEW YORK SGX research center structural genomics, nysgxrc; 2.04A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=86.97 E-value=2.9 Score=43.33 Aligned_cols=117 Identities=9% Similarity=-0.024 Sum_probs=76.5
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCC-----------------chhhHHHHHHHHHHhC-CCceEEecc--ccCcHHHH---
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQG-----------------NSIYQIEMIKFIKKEY-PDMQVIGGN--VLFGYQPR--- 386 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G-----------------~~~~~l~~i~~i~~~~-~~vpvi~g~--v~s~~~a~--- 386 (590)
...+.+..+.+.|.+.+-+...+| .....++.++.+++.+ +++++.+.- .-+.++|.
T Consensus 140 ~~~~~a~~~~~~Gf~~vKik~g~~~~g~~~~~~~~gg~~~~~~~~~~e~v~avr~a~G~d~~l~vD~n~~~~~~~a~~~~ 219 (392)
T 2poz_A 140 EFARAVERPLKEGYGALKFYPLAQRVGSALQHVTRRSMSAEAIELAYRRVKAVRDAAGPEIELMVDLSGGLTTDETIRFC 219 (392)
T ss_dssp HHHHHTHHHHHTTCSEEEECCCCEEETTEEECCBTTBCCHHHHHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEecccccccccccccccCCcchhhHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHH
Confidence 345667778889999998876632 1134568888888876 578888642 22566654
Q ss_pred -HHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcC-CCEEEECc
Q psy1056 387 -ATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALG-ASTAMMGS 460 (590)
Q Consensus 387 -~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalG-A~~v~~g~ 460 (590)
.|.+.|+++| +-- +... ....+.+++ +..++||++++.+.+..++.+++..| +|.+++-.
T Consensus 220 ~~l~~~~i~~i----E~P-----~~~~--~~~~~~~l~---~~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~ik~ 281 (392)
T 2poz_A 220 RKIGELDICFV----EEP-----CDPF--DNGALKVIS---EQIPLPIAVGERVYTRFGFRKIFELQACGIIQPDI 281 (392)
T ss_dssp HHHGGGCEEEE----ECC-----SCTT--CHHHHHHHH---HHCSSCEEECTTCCHHHHHHHHHTTTCCSEECCCT
T ss_pred HHHHhcCCCEE----ECC-----CCcc--cHHHHHHHH---hhCCCCEEecCCcCCHHHHHHHHHcCCCCEEecCc
Confidence 3445677776 211 1000 222333333 34579999999999999999999887 68886643
|
| >2h9a_B CO dehydrogenase/acetyl-COA synthase, iron- sulfur protein; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} PDB: 2ycl_B* | Back alignment and structure |
|---|
Probab=86.92 E-value=1.5 Score=43.93 Aligned_cols=64 Identities=13% Similarity=-0.057 Sum_probs=50.1
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCch-------hhHHHHHHHHHHhCCCceEEeccc----cCcHHHHHHHHCCCC
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNS-------IYQIEMIKFIKKEYPDMQVIGGNV----LFGYQPRATLLNFIY 394 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~-------~~~l~~i~~i~~~~~~vpvi~g~v----~s~~~a~~l~~~Gvd 394 (590)
...+.+..+++.|+++|-|......+ +...+.++.+++.+ ++|+.+++. ..++.++.+.++|++
T Consensus 75 ~~~~~A~~~v~~GAdiIDIg~~StrP~~~~vs~eee~~vV~~v~~~~-~vplsI~DT~~~~~~~~V~eaal~aga~ 149 (310)
T 2h9a_B 75 DPVAWAKKCVEYGADIVALRLVSAHPDGQNRSGAELAEVCKAVADAI-DVPLMIIGCGVEEKDAEIFPVIGEALSG 149 (310)
T ss_dssp CHHHHHHHHHHTTCSEEEEECGGGCTTTTCCCHHHHHHHHHHHHHHC-SSCEEEECCSCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHcCCcEEEEeCccCCCCCCCCCHHHHHHHHHHHHHhC-CceEEEECCCCCCCCHHHHHHHHHhCCC
Confidence 45677888899999999987632221 23466788888887 899999777 789999999999997
|
| >3fok_A Uncharacterized protein CGL0159; CGL0159 ,brevibacterium flavum., structural genomics, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=86.89 E-value=4.3 Score=40.30 Aligned_cols=116 Identities=13% Similarity=0.066 Sum_probs=67.2
Q ss_pred HHHHHHcCCcEEE--EecCCCc--hhhHHHHHHHHH---HhCCCceEEec---------cc---cC----cHHHHHHHHC
Q psy1056 335 LKLLSQAGVDVVI--LDSSQGN--SIYQIEMIKFIK---KEYPDMQVIGG---------NV---LF----GYQPRATLLN 391 (590)
Q Consensus 335 ~~~li~~gad~i~--V~~~~G~--~~~~l~~i~~i~---~~~~~vpvi~g---------~v---~s----~~~a~~l~~~ 391 (590)
++..+..|+|.+. +...-|. ....++.+..+. ..| ++|+++- .+ .+ ...++.+.++
T Consensus 134 Ve~AvrlGADaV~~l~~i~~Gs~~e~~~l~~la~vv~ea~~~-GlP~~~ep~~y~r~gg~v~~~~dp~~Va~aaRiAaEL 212 (307)
T 3fok_A 134 VSSMVDRGVDFAKTLVRINLSDAGTAPTLEATAHAVNEAAAA-QLPIMLEPFMSNWVNGKVVNDLSTDAVIQSVAIAAGL 212 (307)
T ss_dssp HHHHHHHTCCEEEEEEEECTTCTTHHHHHHHHHHHHHHHHHT-TCCEEEEEEEEEEETTEEEECCSHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCCEEEEEEEECCCChhHHHHHHHHHHHHHHHHHc-CCcEEEEeeccccCCCCcCCCCCHHHHHHHHHHHHHh
Confidence 4556677999866 4333332 233344444333 345 6776641 12 13 2345666778
Q ss_pred CCC----EEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCC--HHHH----HHHHH-cCCCEEEECc
Q psy1056 392 FIY----QIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQS--VGHV----MKALA-LGASTAMMGS 460 (590)
Q Consensus 392 Gvd----~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~--~~di----~kala-lGA~~v~~g~ 460 (590)
|+| +|++... . +..+......+|++..||=.+ ..+. ..|+. .||..+.+|+
T Consensus 213 GADs~~tivK~~y~---e---------------~f~~Vv~a~~vPVViaGG~k~~~~~e~L~~v~~A~~~aGa~Gv~vGR 274 (307)
T 3fok_A 213 GNDSSYTWMKLPVV---E---------------EMERVMESTTMPTLLLGGEGGNDPDATFASWEHALTLPGVRGLTVGR 274 (307)
T ss_dssp SSCCSSEEEEEECC---T---------------THHHHGGGCSSCEEEECCSCC--CHHHHHHHHHHTTSTTEEEEEECT
T ss_pred CCCcCCCEEEeCCc---H---------------HHHHHHHhCCCCEEEeCCCCCCCHHHHHHHHHHHHHhCCCeEEeech
Confidence 999 9976322 1 123333444689998888774 4444 45888 6999999997
Q ss_pred cccC-CCCCC
Q psy1056 461 LLAG-TSEAP 469 (590)
Q Consensus 461 ~l~~-~~es~ 469 (590)
-+.. +.+.|
T Consensus 275 NIfQ~~~~dp 284 (307)
T 3fok_A 275 TLLYPQDGDV 284 (307)
T ss_dssp TTSSCSSSCH
T ss_pred hhccCCCCCH
Confidence 6643 34444
|
| >3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=86.88 E-value=3.1 Score=41.63 Aligned_cols=66 Identities=12% Similarity=0.038 Sum_probs=49.8
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCC---Cch------------hhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCC
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQ---GNS------------IYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFI 393 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~---G~~------------~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gv 393 (590)
+...+.+..+++.||++|-|.... |.. ..+...++.+++.+ ++|+.+ +...++.++.++++|+
T Consensus 49 ~~al~~A~~~v~~GAdIIDIGgeSTrPga~~~~~~V~~~eE~~Rv~pvI~~l~~~~-~vpISI-DT~~~~Va~aAl~aGa 126 (314)
T 3tr9_A 49 NSALRTAEKMVDEGADILDIGGEATNPFVDIKTDSPSTQIELDRLLPVIDAIKKRF-PQLISV-DTSRPRVMREAVNTGA 126 (314)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCCSCTTC-----CHHHHHHHHHHHHHHHHHHHHC-CSEEEE-ECSCHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhhC-CCeEEE-eCCCHHHHHHHHHcCC
Confidence 456778999999999999886421 211 11456677777776 788877 7778999999999999
Q ss_pred CEE
Q psy1056 394 YQI 396 (590)
Q Consensus 394 d~i 396 (590)
+.|
T Consensus 127 ~iI 129 (314)
T 3tr9_A 127 DMI 129 (314)
T ss_dssp CEE
T ss_pred CEE
Confidence 988
|
| >4dye_A Isomerase; enolase family protein, EFI, enzym function initiative; 1.60A {Streptomyces coelicolor} PDB: 2oqh_A | Back alignment and structure |
|---|
Probab=86.87 E-value=11 Score=39.14 Aligned_cols=114 Identities=11% Similarity=0.080 Sum_probs=79.4
Q ss_pred hHHHHHHHHHHc-CCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEec-c-ccCcHHHHH----HHHCCCCEEEEcccc
Q psy1056 330 ADKNRLKLLSQA-GVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGG-N-VLFGYQPRA----TLLNFIYQIEMIKFI 402 (590)
Q Consensus 330 ~~~e~~~~li~~-gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g-~-v~s~~~a~~----l~~~Gvd~i~v~~~~ 402 (590)
...+.++..++. |...+-+... .+...-++.++.+++.+|++++++. | .-+.++|.+ |.+.|+.+| +
T Consensus 171 ~~~~~a~~~~~~~G~~~~K~KvG-~~~~~d~~~v~avR~~~~~~~l~vDaN~~w~~~~A~~~~~~l~~~~i~~i----E- 244 (398)
T 4dye_A 171 AMAEHAVRVVEEGGFDAVKLKGT-TDCAGDVAILRAVREALPGVNLRVDPNAAWSVPDSVRAGIALEELDLEYL----E- 244 (398)
T ss_dssp HHHHHHHHHHHHHCCSEEEEECC-SCHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHGGGCCSEE----E-
T ss_pred HHHHHHHHHHHhcCCCEEEEecC-CCHHHHHHHHHHHHHhCCCCeEEeeCCCCCCHHHHHHHHHHHhhcCCCEE----c-
Confidence 445667778888 9999988765 3445557888999998888888863 2 226677654 445788877 2
Q ss_pred cccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcC-CCEEEECc
Q psy1056 403 KKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALG-ASTAMMGS 460 (590)
Q Consensus 403 ~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalG-A~~v~~g~ 460 (590)
.. +. .+...++.....++||.++.-+.+..|+.+++..| +|.+++-.
T Consensus 245 -qP---~~-------d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~k~ 292 (398)
T 4dye_A 245 -DP---CV-------GIEGMAQVKAKVRIPLCTNMCVVRFEDFAPAMRLNAVDVIHGDV 292 (398)
T ss_dssp -CC---SS-------HHHHHHHHHHHCCSCEEESSSCCSGGGHHHHHHTTCCSEEEECH
T ss_pred -CC---CC-------CHHHHHHHHhhCCCCEEeCCcCCCHHHHHHHHHhCCCCEEEeCc
Confidence 11 11 22333444445579999999999999999999987 67777654
|
| >2hxt_A L-fuconate dehydratase; enolase superfamily, D-erythromohydr unknown function; HET: EHM; 1.70A {Xanthomonas campestris PV} PDB: 1yey_A 2hxu_A* 2hne_A | Back alignment and structure |
|---|
Probab=86.83 E-value=8.4 Score=40.47 Aligned_cols=118 Identities=13% Similarity=-0.033 Sum_probs=78.2
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhC-CCceEEecc--ccCcHHHHHHH----HCCCCEEEEcccc
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEY-PDMQVIGGN--VLFGYQPRATL----LNFIYQIEMIKFI 402 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~-~~vpvi~g~--v~s~~~a~~l~----~~Gvd~i~v~~~~ 402 (590)
...+.+..+.+.|.+.+-+.... +....++.++.+++.+ |++++.+.- .-+.++|.++. +.|+++| +-
T Consensus 201 ~~~~~a~~~~~~Gf~~vKik~g~-~~~~d~e~v~avR~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~i----Eq 275 (441)
T 2hxt_A 201 KLVRLAKEAVADGFRTIKLKVGA-NVQDDIRRCRLARAAIGPDIAMAVDANQRWDVGPAIDWMRQLAEFDIAWI----EE 275 (441)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCS-CHHHHHHHHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHTTGGGCCSCE----EC
T ss_pred HHHHHHHHHHHcCCCEEEEccCC-CHHHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCee----eC
Confidence 35567778889999999887653 3455578889998876 578887632 22666665544 4677777 21
Q ss_pred cccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcC-CCEEEECcc
Q psy1056 403 KKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALG-ASTAMMGSL 461 (590)
Q Consensus 403 ~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalG-A~~v~~g~~ 461 (590)
- +... .......+++... ++||++++.+.++.++.+.+..| +|.|++-..
T Consensus 276 P-----~~~~--d~~~~~~l~~~~~--~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~ 326 (441)
T 2hxt_A 276 P-----TSPD--DVLGHAAIRQGIT--PVPVSTGEHTQNRVVFKQLLQAGAVDLIQIDAA 326 (441)
T ss_dssp C-----SCTT--CHHHHHHHHHHHT--TSCEEECTTCCSHHHHHHHHHHTCCSEECCCTT
T ss_pred C-----CCHH--HHHHHHHHHhhCC--CCCEEEeCCcCCHHHHHHHHHcCCCCEEEeCcc
Confidence 1 1100 2233334443321 59999999999999999999887 688876543
|
| >1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* | Back alignment and structure |
|---|
Probab=86.80 E-value=1.3 Score=44.32 Aligned_cols=68 Identities=16% Similarity=0.120 Sum_probs=50.0
Q ss_pred HHHHHHHHHHcCCcEEEEecCC-------------------------Cch--hhHHHHHHHHHHhCC-CceEE-eccccC
Q psy1056 331 DKNRLKLLSQAGVDVVILDSSQ-------------------------GNS--IYQIEMIKFIKKEYP-DMQVI-GGNVLF 381 (590)
Q Consensus 331 ~~e~~~~li~~gad~i~V~~~~-------------------------G~~--~~~l~~i~~i~~~~~-~vpvi-~g~v~s 381 (590)
..+.++.+.++|++.+.+.... |.. ...++.++.+++..+ ++||+ .|+|.+
T Consensus 174 ~~~~a~~~~~~G~d~i~v~~~~~~g~~i~~~~~~~~~~~~~~~gG~sg~~~~~~~~~~i~~v~~~~~~~ipvi~~GGI~~ 253 (311)
T 1jub_A 174 FDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAFYTRLKPEIQIIGTGGIET 253 (311)
T ss_dssp HHHHHHHHTTSCCCEEEECCCEEEEECEETTTTEESCSGGGGEEEEESGGGHHHHHHHHHHHHTTSCTTSEEEEESSCCS
T ss_pred HHHHHHHHHHcCCcEEEecCCCCcCceeccCCCCcccccCCCCCccccccccHHHHHHHHHHHHhcCCCCCEEEECCCCC
Confidence 4456788888999998775321 110 113577888888764 78988 688889
Q ss_pred cHHHHHHHHCCCCEEEE
Q psy1056 382 GYQPRATLLNFIYQIEM 398 (590)
Q Consensus 382 ~~~a~~l~~~Gvd~i~v 398 (590)
.++|.+++.+|||++-+
T Consensus 254 ~~da~~~l~~GAd~V~v 270 (311)
T 1jub_A 254 GQDAFEHLLCGATMLQI 270 (311)
T ss_dssp HHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHcCCCEEEE
Confidence 99999999999999944
|
| >1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A* | Back alignment and structure |
|---|
Probab=86.78 E-value=1.8 Score=44.06 Aligned_cols=68 Identities=22% Similarity=0.196 Sum_probs=51.3
Q ss_pred hHHHHHHHHHHcCCcEEEEecCC---C---chh-hHHHHHHHHHHhCCCceEEe-ccccCcHHHHHHHHCC-CCEEEE
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQ---G---NSI-YQIEMIKFIKKEYPDMQVIG-GNVLFGYQPRATLLNF-IYQIEM 398 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~---G---~~~-~~l~~i~~i~~~~~~vpvi~-g~v~s~~~a~~l~~~G-vd~i~v 398 (590)
+..+.++.+.+.|++.+++.... . ... ...+.++.+++.+ ++|+++ |.+.++++|.++++.| +|.|-+
T Consensus 230 ~~~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~~~~ir~~~-~iPVi~~Ggi~s~~~a~~~l~~G~aD~V~i 306 (338)
T 1z41_A 230 DHIGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQA-DMATGAVGMITDGSMAEEILQNGRADLIFI 306 (338)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHH-CCEEEECSSCCSHHHHHHHHHTTSCSEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEecCccccCCCCCCccchHHHHHHHHHHC-CCCEEEECCCCCHHHHHHHHHcCCceEEee
Confidence 45677888899999999986531 0 111 2367788888887 789985 5566999999999999 999943
|
| >1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A | Back alignment and structure |
|---|
Probab=86.73 E-value=2.7 Score=41.83 Aligned_cols=93 Identities=13% Similarity=0.016 Sum_probs=58.8
Q ss_pred HHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEc---ccccccCCCcccccc-chhH-HHHHHHHHhcCCCcEEe
Q psy1056 361 MIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMI---KFIKKEYPDMQVIGR-NGTA-VYRVAEYASRRGVPVIA 435 (590)
Q Consensus 361 ~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~---~~~~~~~~~~~~~g~-~~~~-l~~~~~~~~~~~v~iia 435 (590)
.+..+.+. +-|+.+-++-+.-.|+.+.++|+|+|.++ ..... |..+.+. +.+. +..++..+...++|||+
T Consensus 10 ~lr~l~~~--~~~i~~~~a~D~~sA~~~~~aG~~ai~vsg~~~a~~l---G~pD~~~vt~~em~~~~~~I~~~~~~Pvia 84 (295)
T 1s2w_A 10 QLKQMLNS--KDLEFIMEAHNGLSARIVQEAGFKGIWGSGLSVSAQL---GVRDSNEASWTQVVEVLEFMSDASDVPILL 84 (295)
T ss_dssp HHHHHHHS--SSCEEEEEECSHHHHHHHHHHTCSCEEECCHHHHHTC------------CHHHHHHHHHHHHTCSSCEEE
T ss_pred HHHHHHhC--CCcEEEecCCCHHHHHHHHHcCCCEEEeChHHHHHhC---CCCCCCCCCHHHHHHHHHHHHhcCCCCEEe
Confidence 34444443 45777778889999999999999999883 22222 2444454 5544 44456666666799999
Q ss_pred cC--CCCCHHHHHH----HHHcCCCEEEE
Q psy1056 436 DG--GVQSVGHVMK----ALALGASTAMM 458 (590)
Q Consensus 436 ~G--Gi~~~~di~k----alalGA~~v~~ 458 (590)
|+ |..++.++++ ....||.+|-+
T Consensus 85 D~d~Gyg~~~~v~~~v~~l~~aGaagv~i 113 (295)
T 1s2w_A 85 DADTGYGNFNNARRLVRKLEDRGVAGACL 113 (295)
T ss_dssp ECCSSCSSHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCCCCCCCHHHHHHHHHHHHHcCCcEEEE
Confidence 75 7667766654 45689999944
|
| >1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus} | Back alignment and structure |
|---|
Probab=86.69 E-value=3.9 Score=41.05 Aligned_cols=92 Identities=14% Similarity=0.063 Sum_probs=61.9
Q ss_pred HHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEc---cc-ccccCCCcccccc-chhHH-HHHHHHHhcC-CCcEE
Q psy1056 362 IKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMI---KF-IKKEYPDMQVIGR-NGTAV-YRVAEYASRR-GVPVI 434 (590)
Q Consensus 362 i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~---~~-~~~~~~~~~~~g~-~~~~l-~~~~~~~~~~-~v~ii 434 (590)
+..+.+. +-|+.+-++-+.-.|+.+.++|+|+|.++ +. .... ..+.+. +.+.+ ..++..+... ++|||
T Consensus 31 lr~l~~~--~~~i~~~~ayD~~sA~i~e~aGfdai~vs~~~~a~~~lG---~pD~~~vt~~em~~~~~~I~r~~~~~Pvi 105 (318)
T 1zlp_A 31 MHRLIEE--HGSVLMPGVQDALSAAVVEKTGFHAAFVSGYSVSAAMLG---LPDFGLLTTTEVVEATRRITAAAPNLCVV 105 (318)
T ss_dssp HHHHHHH--SSSEEEEEECSHHHHHHHHHTTCSEEEECHHHHHHHHHC---CCSSSCSCHHHHHHHHHHHHHHSSSSEEE
T ss_pred HHHHHhC--CCcEEEecCCCHHHHHHHHHcCCCEEEECcHHHhhHhcC---CCCCCCCCHHHHHHHHHHHHhhccCCCEE
Confidence 4444444 45677778889999999999999999882 22 1122 444455 55543 3455555555 79999
Q ss_pred ecC--CCCCHHHHHH----HHHcCCCEEEE
Q psy1056 435 ADG--GVQSVGHVMK----ALALGASTAMM 458 (590)
Q Consensus 435 a~G--Gi~~~~di~k----alalGA~~v~~ 458 (590)
+|. |..++.++++ .+..||.+|-+
T Consensus 106 aD~d~Gyg~~~~v~~tv~~l~~aGaagv~i 135 (318)
T 1zlp_A 106 VDGDTGGGGPLNVQRFIRELISAGAKGVFL 135 (318)
T ss_dssp EECTTCSSSHHHHHHHHHHHHHTTCCEEEE
T ss_pred EeCCCCCCCHHHHHHHHHHHHHcCCcEEEE
Confidence 976 7667776654 45689999954
|
| >3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A | Back alignment and structure |
|---|
Probab=86.60 E-value=3.8 Score=41.07 Aligned_cols=112 Identities=14% Similarity=0.159 Sum_probs=64.0
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCch-----hhHHHHHHHHHHhC-CCceEEecccc-----CcHHHHHHHHCCCCEEEE
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNS-----IYQIEMIKFIKKEY-PDMQVIGGNVL-----FGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~-----~~~l~~i~~i~~~~-~~vpvi~g~v~-----s~~~a~~l~~~Gvd~i~v 398 (590)
.....++.+++.|++.+.+..+.|.. +.-.+.++...+.. ..+||++|-.. +.+-++.+.++|+|++-+
T Consensus 45 ~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~st~eai~la~~A~~~Gadavlv 124 (314)
T 3qze_A 45 SLAKLVDFHLQEGTNAIVAVGTTGESATLDVEEHIQVIRRVVDQVKGRIPVIAGTGANSTREAVALTEAAKSGGADACLL 124 (314)
T ss_dssp HHHHHHHHHHHHTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHHcCCCEEEE
Confidence 34557888899999999987665543 22234455444433 36899986554 345566778899999955
Q ss_pred -cccccccCCCccccccchhHHH-HHHHHHhcCCCcEEec-----CCCCCHHHHHHHHH
Q psy1056 399 -IKFIKKEYPDMQVIGRNGTAVY-RVAEYASRRGVPVIAD-----GGVQSVGHVMKALA 450 (590)
Q Consensus 399 -~~~~~~~~~~~~~~g~~~~~l~-~~~~~~~~~~v~iia~-----GGi~~~~di~kala 450 (590)
.+.-.. .+...+. -....+...++|||.= .|+.=+.+..+.|+
T Consensus 125 ~~P~y~~---------~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La 174 (314)
T 3qze_A 125 VTPYYNK---------PTQEGMYQHFRHIAEAVAIPQILYNVPGRTSCDMLPETVERLS 174 (314)
T ss_dssp ECCCSSC---------CCHHHHHHHHHHHHHHSCSCEEEEECHHHHSCCCCHHHHHHHH
T ss_pred cCCCCCC---------CCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHh
Confidence 211111 1212222 2333444456787762 25554555555665
|
| >1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A | Back alignment and structure |
|---|
Probab=86.58 E-value=3.6 Score=41.15 Aligned_cols=69 Identities=12% Similarity=0.012 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCch-----hhHHHHHHHHHHhC-CCceEEecccc-----CcHHHHHHHHCCCCEEEE
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNS-----IYQIEMIKFIKKEY-PDMQVIGGNVL-----FGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~-----~~~l~~i~~i~~~~-~~vpvi~g~v~-----s~~~a~~l~~~Gvd~i~v 398 (590)
.....++.+++.|++.+.+..+.|.. +.-.+.++...+.. ..+||++|-.. +.+-++.+.++|+|++-+
T Consensus 34 ~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~grvpViaGvg~~st~~ai~la~~A~~~Gadavlv 113 (306)
T 1o5k_A 34 SYERLVRYQLENGVNALIVLGTTGESPTVNEDEREKLVSRTLEIVDGKIPVIVGAGTNSTEKTLKLVKQAEKLGANGVLV 113 (306)
T ss_dssp HHHHHHHHHHHTTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEcCCCccHHHHHHHHHHHHhcCCCEEEE
Confidence 34567888999999999987665543 12244555555433 36899986554 345566777899999955
|
| >2vef_A Dihydropteroate synthase; antibiotic resistance, transferase, folate biosynthesis; 1.8A {Streptococcus pneumoniae} PDB: 2veg_A* | Back alignment and structure |
|---|
Probab=86.52 E-value=2.7 Score=42.16 Aligned_cols=66 Identities=18% Similarity=0.164 Sum_probs=50.2
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCC---Cc--------hhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEE
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQ---GN--------SIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQI 396 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~---G~--------~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i 396 (590)
+...+.+..+++.|+++|-|.... |. ...++..++.+++.+ ++|+.+ +...++.++.++++|++.|
T Consensus 33 ~~a~~~a~~~v~~GAdIIDIGgeSTrPGa~~v~~~eE~~Rv~pvI~~l~~~~-~vpiSI-DT~~~~Va~aAl~aGa~iI 109 (314)
T 2vef_A 33 EQALQQARKLIAEGASMLDIGGESTRPGSSYVEIEEEIQRVVPVIKAIRKES-DVLISI-DTWKSQVAEAALAAGADLV 109 (314)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCC-----CHHHHHHHHHHHHHHHHHHHHHC-CCEEEE-ECSCHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhhC-CceEEE-eCCCHHHHHHHHHcCCCEE
Confidence 455678899999999999887521 21 122456677788776 788877 7789999999999999988
|
| >2ps2_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9440A, enolase superfamily, PSI-2; 1.80A {Aspergillus oryzae RIB40} | Back alignment and structure |
|---|
Probab=86.50 E-value=4.9 Score=41.20 Aligned_cols=113 Identities=14% Similarity=0.019 Sum_probs=76.7
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhC-CCceEEecc--ccCcHHHHH----H-HHCCCCEEEEcc
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEY-PDMQVIGGN--VLFGYQPRA----T-LLNFIYQIEMIK 400 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~-~~vpvi~g~--v~s~~~a~~----l-~~~Gvd~i~v~~ 400 (590)
+...+.+..+.+.|.+.+-++... +....++.++.+++.+ +++++.+.- .-+.+++.+ | .+.|+ +|
T Consensus 148 ~~~~~~a~~~~~~Gf~~iKik~g~-~~~~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~~i-~i---- 221 (371)
T 2ps2_A 148 EDMRARVAKYRAKGYKGQSVKISG-EPVTDAKRITAALANQQPDEFFIVDANGKLSVETALRLLRLLPHGLDF-AL---- 221 (371)
T ss_dssp HHHHHHHHHHHTTTCCEEEEECCS-CHHHHHHHHHHHTTTCCTTCEEEEECTTBCCHHHHHHHHHHSCTTCCC-EE----
T ss_pred HHHHHHHHHHHHhChheEEeecCC-CHHHHHHHHHHHHHhcCCCCEEEEECCCCcCHHHHHHHHHHHHhhcCC-cC----
Confidence 345566777888999999887653 3455578888888877 468887642 226666644 3 44577 66
Q ss_pred cccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcC-CCEEEEC
Q psy1056 401 FIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALG-ASTAMMG 459 (590)
Q Consensus 401 ~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalG-A~~v~~g 459 (590)
+- . +. . +...++..+..++||++++.+.++.++.+++..| +|.+++-
T Consensus 222 E~--P---~~----~---~~~~~~l~~~~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik 269 (371)
T 2ps2_A 222 EA--P---CA----T---WRECISLRRKTDIPIIYDELATNEMSIVKILADDAAEGIDLK 269 (371)
T ss_dssp EC--C---BS----S---HHHHHHHHTTCCSCEEESTTCCSHHHHHHHHHHTCCSEEEEE
T ss_pred cC--C---cC----C---HHHHHHHHhhCCCCEEeCCCcCCHHHHHHHHHhCCCCEEEec
Confidence 21 1 11 1 2233444444579999999999999999999987 6888774
|
| >3q45_A Mandelate racemase/muconate lactonizing enzyme FA possible chloromuconate cycloisomerase...; (beta/alpha)8-barrel; 3.00A {Cytophaga hutchinsonii} PDB: 3q4d_A | Back alignment and structure |
|---|
Probab=86.45 E-value=11 Score=38.44 Aligned_cols=120 Identities=9% Similarity=0.011 Sum_probs=80.3
Q ss_pred chhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhC-CCceEEec-ccc-CcHHHH----HHHHCCCCEEEEcc
Q psy1056 328 READKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEY-PDMQVIGG-NVL-FGYQPR----ATLLNFIYQIEMIK 400 (590)
Q Consensus 328 ~~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~-~~vpvi~g-~v~-s~~~a~----~l~~~Gvd~i~v~~ 400 (590)
.+...+.++..++.|...+-+.... +...-++.++.+++.+ |+.++++. |.. +.++|. .|.+.|+++|
T Consensus 141 ~e~~~~~a~~~~~~G~~~~K~KvG~-~~~~d~~~v~avR~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~~i---- 215 (368)
T 3q45_A 141 PHKMAADAVQIKKNGFEIIKVKVGG-SKELDVERIRMIREAAGDSITLRIDANQGWSVETAIETLTLLEPYNIQHC---- 215 (368)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECCS-CHHHHHHHHHHHHHHHCSSSEEEEECTTCBCHHHHHHHHHHHGGGCCSCE----
T ss_pred HHHHHHHHHHHHHcCCCeEEEEecC-CHHHHHHHHHHHHHHhCCCCeEEEECCCCCChHHHHHHHHHHhhcCCCEE----
Confidence 3455667777888999998887643 2344578889999887 67888864 222 666654 4555788888
Q ss_pred cccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcC-CCEEEECccc
Q psy1056 401 FIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALG-ASTAMMGSLL 462 (590)
Q Consensus 401 ~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalG-A~~v~~g~~l 462 (590)
+- . +..+ ....+..++ +..++||.+++.+.+..|+.+++..| +|.+++-...
T Consensus 216 Eq--P---~~~~--~~~~~~~l~---~~~~iPIa~dE~~~~~~~~~~~~~~~~~d~v~~k~~~ 268 (368)
T 3q45_A 216 EE--P---VSRN--LYTALPKIR---QACRIPIMADESCCNSFDAERLIQIQACDSFNLKLSK 268 (368)
T ss_dssp EC--C---BCGG--GGGGHHHHH---HTCSSCEEESTTCCSHHHHHHHHHTTCCSEEEECTTT
T ss_pred EC--C---CChh--HHHHHHHHH---hhCCCCEEEcCCcCCHHHHHHHHHcCCCCeEEechhh
Confidence 21 1 1100 222233333 34579999999999999999999876 6888776544
|
| >3p3b_A Mandelate racemase/muconate lactonizing protein; enolase superfamily fold, galacturonate dehydratase, D-tartr galacturonate, lyase; HET: TAR; 1.65A {Geobacillus SP} PDB: 3ops_A* 3n4f_A* 3qpe_A* | Back alignment and structure |
|---|
Probab=86.42 E-value=2.5 Score=43.85 Aligned_cols=117 Identities=10% Similarity=0.070 Sum_probs=75.3
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCC--------chhhHHHHHHHHHHhC-CCceEEec--cccCcHHHHHHH----HCCCC
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQG--------NSIYQIEMIKFIKKEY-PDMQVIGG--NVLFGYQPRATL----LNFIY 394 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G--------~~~~~l~~i~~i~~~~-~~vpvi~g--~v~s~~~a~~l~----~~Gvd 394 (590)
...+.+..+.+.|.+.+-+....+ .....++.++.+++.+ +++++++. ..-+.++|.++. +.|++
T Consensus 151 ~~~~~a~~~~~~Gf~~vKik~g~~~~~~~~~~~~~~~~e~v~avR~~~g~d~~l~vDan~~~~~~~ai~~~~~l~~~~i~ 230 (392)
T 3p3b_A 151 LMQEEAMQGYAKGQRHFKIKVGRGGRHMPLWEGTKRDIAIVRGISEVAGPAGKIMIDANNAYNLNLTKEVLAALSDVNLY 230 (392)
T ss_dssp HHHHHHHHHHHTTCCCEEEECCHHHHTSCHHHHHHHHHHHHHHHHHHHCTTCCEEEECTTCCCHHHHHHHHHHTTTSCEE
T ss_pred HHHHHHHHHHHhCCCEEEECcCcCcccCCccccHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCC
Confidence 445667778889999998876543 2345578888888876 57887753 222667665544 35666
Q ss_pred EEEEcccccccCCCccccccchhHHHHHHHHHh--cCCCcEEecCCCCCHHHHHHHHHcC-CCEEEEC
Q psy1056 395 QIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYAS--RRGVPVIADGGVQSVGHVMKALALG-ASTAMMG 459 (590)
Q Consensus 395 ~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~--~~~v~iia~GGi~~~~di~kalalG-A~~v~~g 459 (590)
+| + .. +. + ......++++.+. ..++||++++ +.++.++.+++..| +|.|++-
T Consensus 231 ~i----E--~P---~~-~--d~~~~~~l~~~l~~~g~~iPIa~dE-~~~~~~~~~~i~~~~~d~v~ik 285 (392)
T 3p3b_A 231 WL----E--EA---FH-E--DEALYEDLKEWLGQRGQNVLIADGE-GLASPHLIEWATRGRVDVLQYD 285 (392)
T ss_dssp EE----E--CS---SS-C--CHHHHHHHHHHHHHHTCCCEEEECC-SSCCTTHHHHHHTTSCCEECCB
T ss_pred EE----e--cC---Cc-c--cHHHHHHHHHhhccCCCCccEEecC-CCCHHHHHHHHHcCCCCEEEeC
Confidence 65 2 11 11 0 2223333443211 0469999999 99999999999998 6777553
|
| >2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A | Back alignment and structure |
|---|
Probab=86.42 E-value=1.3 Score=44.16 Aligned_cols=64 Identities=19% Similarity=0.133 Sum_probs=48.5
Q ss_pred HHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEE
Q psy1056 333 NRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 333 e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v 398 (590)
+.+....++|+|++-+++ .....+....+.++..+|++++.+-+..+.++++.+.++|||+|-+
T Consensus 208 ee~~~A~~aGaD~I~ld~--~~~~~l~~~v~~l~~~~~~~~I~ASGGIt~~ni~~~~~aGaD~i~v 271 (299)
T 2jbm_A 208 QEAVQAAEAGADLVLLDN--FKPEELHPTATVLKAQFPSVAVEASGGITLDNLPQFCGPHIDVISM 271 (299)
T ss_dssp HHHHHHHHTTCSEEEEES--CCHHHHHHHHHHHHHHCTTSEEEEESSCCTTTHHHHCCTTCCEEEC
T ss_pred HHHHHHHHcCCCEEEECC--CCHHHHHHHHHHhhccCCCeeEEEECCCCHHHHHHHHHCCCCEEEE
Confidence 445556678999999876 3344555566667777888898865555999999999999999955
|
| >3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A | Back alignment and structure |
|---|
Probab=86.41 E-value=4.2 Score=40.29 Aligned_cols=69 Identities=12% Similarity=0.037 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCch-----hhHHHHHHHHHHhC-CCceEEecccc-----CcHHHHHHHHCCCCEEEE
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNS-----IYQIEMIKFIKKEY-PDMQVIGGNVL-----FGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~-----~~~l~~i~~i~~~~-~~vpvi~g~v~-----s~~~a~~l~~~Gvd~i~v 398 (590)
.....++.+++.|++.+.+..+.|.. +.-.+.++...+.. ..+||++|-.. +.+-++.+.++|+|++-+
T Consensus 23 ~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gadavlv 102 (291)
T 3tak_A 23 SLEKLVEWHIEQGTNSIVAVGTTGEASTLSMEEHTQVIKEIIRVANKRIPIIAGTGANSTREAIELTKAAKDLGADAALL 102 (291)
T ss_dssp HHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHHCCCCEEEECccccccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 44567888899999999988776643 22244555555443 36899986554 345566788899999954
|
| >3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=86.38 E-value=4.8 Score=39.90 Aligned_cols=113 Identities=12% Similarity=0.050 Sum_probs=66.8
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCch-----hhHHHHHHHHHHhCC-CceEEecccc-----CcHHHHHHHHCCCCEEEE
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNS-----IYQIEMIKFIKKEYP-DMQVIGGNVL-----FGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~-----~~~l~~i~~i~~~~~-~vpvi~g~v~-----s~~~a~~l~~~Gvd~i~v 398 (590)
.....++.+++.|++.+.+..+.|.. +.-.+.++...+... .+||++|-.. +.+-++.+.++|+|++-+
T Consensus 25 ~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Gadavlv 104 (294)
T 3b4u_A 25 AMIAHARRCLSNGCDSVTLFGTTGEGCSVGSRERQAILSSFIAAGIAPSRIVTGVLVDSIEDAADQSAEALNAGARNILL 104 (294)
T ss_dssp HHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHTTCCGGGEEEEECCSSHHHHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCccHHHHHHHHHHHHhcCCCEEEE
Confidence 34567888999999999988776643 223455666666543 5899976554 345566777899999955
Q ss_pred -cccccccCCCccccccchhHHH-HHHHHHhcC---CCcEEe-c----CCCCCHHHHHHHHH
Q psy1056 399 -IKFIKKEYPDMQVIGRNGTAVY-RVAEYASRR---GVPVIA-D----GGVQSVGHVMKALA 450 (590)
Q Consensus 399 -~~~~~~~~~~~~~~g~~~~~l~-~~~~~~~~~---~v~iia-~----GGi~~~~di~kala 450 (590)
.+.-.+ ..+...+. -....+... ++|||. . .|+.-+.+..+.|+
T Consensus 105 ~~P~y~~--------~~s~~~l~~~f~~va~a~p~~~lPiilYn~P~~tg~~l~~~~~~~La 158 (294)
T 3b4u_A 105 APPSYFK--------NVSDDGLFAWFSAVFSKIGKDARDILVYNIPSVTMVTLSVELVGRLK 158 (294)
T ss_dssp CCCCSSC--------SCCHHHHHHHHHHHHHHHCTTCCCEEEEECHHHHSCCCCHHHHHHHH
T ss_pred cCCcCCC--------CCCHHHHHHHHHHHHHhcCCCCCcEEEEECcchhCcCCCHHHHHHHH
Confidence 221111 01112222 223333334 588876 2 36655556666665
|
| >3mkc_A Racemase; metabolic process, PSI2, NYSGXRC, structu genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; 1.77A {Pseudovibrio SP} PDB: 3nzg_A | Back alignment and structure |
|---|
Probab=86.37 E-value=6.8 Score=40.54 Aligned_cols=116 Identities=7% Similarity=-0.094 Sum_probs=76.2
Q ss_pred HHHHHHHHHcCCcEEEEe-cCC--CchhhHHHHHHHHHHhC-CCceEEecc--cc-CcHHHH----HHHHCCCCEEEEcc
Q psy1056 332 KNRLKLLSQAGVDVVILD-SSQ--GNSIYQIEMIKFIKKEY-PDMQVIGGN--VL-FGYQPR----ATLLNFIYQIEMIK 400 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~-~~~--G~~~~~l~~i~~i~~~~-~~vpvi~g~--v~-s~~~a~----~l~~~Gvd~i~v~~ 400 (590)
.+.++..++.|...+-++ ... .+...-++.++.+|+.+ |+.++++.- .- +.++|. .|.+.|+++|
T Consensus 162 ~~~a~~~~~~G~~~~K~~k~g~~~~~~~~d~e~v~avR~a~G~d~~l~vDaN~~~~~~~~A~~~~~~L~~~~i~~i---- 237 (394)
T 3mkc_A 162 APLLEKAKAHNIRAVKVCVPIKADWSTKEVAYYLRELRGILGHDTDMMVDYLYRFTDWYEVARLLNSIEDLELYFA---- 237 (394)
T ss_dssp HHHHHHHHHTTCSEEEEECCTTCCCCHHHHHHHHHHHHHHHCSSSEEEEECTTCCCCHHHHHHHHHHTGGGCCSEE----
T ss_pred HHHHHHHHHcCCCEEEeCccCCCccCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCCCHHHHHHHHHHhhhcCCeEE----
Confidence 346777888999998883 331 23445578899999887 578888642 22 456654 4445788888
Q ss_pred cccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcC-CCEEEECcc
Q psy1056 401 FIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALG-ASTAMMGSL 461 (590)
Q Consensus 401 ~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalG-A~~v~~g~~ 461 (590)
+- . +... ... ..++..+..++||++++.+.+..++.+++..| +|.+++-..
T Consensus 238 Ee--P---~~~~--d~~---~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k~~ 289 (394)
T 3mkc_A 238 EA--T---LQHD--DLS---GHAKLVENTRSRICGAEMSTTRFEAEEWITKGKVHLLQSDYN 289 (394)
T ss_dssp ES--C---SCTT--CHH---HHHHHHHHCSSCBEECTTCCHHHHHHHHHHTTCCSEECCCTT
T ss_pred EC--C---CCch--hHH---HHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcCCCCeEecCcc
Confidence 21 1 1000 222 23333334579999999999999999999987 688866543
|
| >2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A | Back alignment and structure |
|---|
Probab=86.32 E-value=3.5 Score=40.86 Aligned_cols=112 Identities=13% Similarity=0.127 Sum_probs=65.2
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCchh-----hHHHHHHHHHHhC-CCceEEecccc-C----cHHHHHHHHCCCCEEEE
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNSI-----YQIEMIKFIKKEY-PDMQVIGGNVL-F----GYQPRATLLNFIYQIEM 398 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~~-----~~l~~i~~i~~~~-~~vpvi~g~v~-s----~~~a~~l~~~Gvd~i~v 398 (590)
.....++.+++.|++.+.+..+.|... .-.+.++...+.. ..+||++|-.. + .+-++.+.++|+|++-+
T Consensus 23 ~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gadavlv 102 (292)
T 2ojp_A 23 SLKKLIDYHVASGTSAIVSVGTTGESATLNHDEHADVVMMTLDLADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLT 102 (292)
T ss_dssp HHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHTTTSSCSEEEE
T ss_pred HHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCccHHHHHHHHHHHHhcCCCEEEE
Confidence 345678888999999999877666431 2244555555433 36899986554 2 34455566699999954
Q ss_pred -cccccccCCCccccccchhHHH-HHHHHHhcCCCcEEe-c----CCCCCHHHHHHHHH
Q psy1056 399 -IKFIKKEYPDMQVIGRNGTAVY-RVAEYASRRGVPVIA-D----GGVQSVGHVMKALA 450 (590)
Q Consensus 399 -~~~~~~~~~~~~~~g~~~~~l~-~~~~~~~~~~v~iia-~----GGi~~~~di~kala 450 (590)
.+.-. ..+...+. -....+...++|||. . .|+.-+.+..+.|+
T Consensus 103 ~~P~y~---------~~s~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La 152 (292)
T 2ojp_A 103 VTPYYN---------RPSQEGLYQHFKAIAEHTDLPQILYNVPSRTGCDLLPETVGRLA 152 (292)
T ss_dssp ECCCSS---------CCCHHHHHHHHHHHHTTCSSCEEEECCHHHHSCCCCHHHHHHHH
T ss_pred CCCCCC---------CCCHHHHHHHHHHHHHhcCCCEEEEeCcchhccCCCHHHHHHHH
Confidence 21111 11222222 234444455688876 2 36655556666665
|
| >3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=86.30 E-value=3.3 Score=41.62 Aligned_cols=69 Identities=14% Similarity=-0.011 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCch-----hhHHHHHHHHHHhC-CCceEEecccc-----CcHHHHHHHHCCCCEEEE
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNS-----IYQIEMIKFIKKEY-PDMQVIGGNVL-----FGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~-----~~~l~~i~~i~~~~-~~vpvi~g~v~-----s~~~a~~l~~~Gvd~i~v 398 (590)
.....++.+++.|++.+.+..+.|.. +.-.+.++...+.. ..+||++|-.. +.+-++.+.++|+|++-+
T Consensus 46 ~l~~lv~~li~~Gv~Gi~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv 125 (315)
T 3na8_A 46 ALGRSIERLIDGGVHAIAPLGSTGEGAYLSDPEWDEVVDFTLKTVAHRVPTIVSVSDLTTAKTVRRAQFAESLGAEAVMV 125 (315)
T ss_dssp HHHHHHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 44567888999999999987665543 22244555555443 36899986543 345567788899999955
|
| >2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A* | Back alignment and structure |
|---|
Probab=86.28 E-value=1.1 Score=44.95 Aligned_cols=69 Identities=17% Similarity=0.141 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHcC-CcEEEEecCC----------------------Cch-----hhHHHHHHHHHHhCCCceEE-ecccc
Q psy1056 330 ADKNRLKLLSQAG-VDVVILDSSQ----------------------GNS-----IYQIEMIKFIKKEYPDMQVI-GGNVL 380 (590)
Q Consensus 330 ~~~e~~~~li~~g-ad~i~V~~~~----------------------G~~-----~~~l~~i~~i~~~~~~vpvi-~g~v~ 380 (590)
+..+.++.+.++| ++.+.+.... |.+ ...++.++.+++..+++|++ .|+|.
T Consensus 175 ~~~~~a~~~~~aG~~d~i~v~~~~~~~~~i~~~~~~~~~~~~~~~gG~sg~~~~p~~~~~i~~v~~~~~~ipvi~~GGI~ 254 (314)
T 2e6f_A 175 HFDTAAAVLNEFPLVKFVTCVNSVGNGLVIDAESESVVIKPKQGFGGLGGKYILPTALANVNAFYRRCPDKLVFGCGGVY 254 (314)
T ss_dssp HHHHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCCGGGGEEEEESGGGHHHHHHHHHHHHHHCTTSEEEEESSCC
T ss_pred HHHHHHHHHHhcCCceEEEEeCCCCccccccCCCCCcccccCcCCCccCcccccHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 3445678888999 9998764321 100 11357888888887789998 67888
Q ss_pred CcHHHHHHHHCCCCEEEE
Q psy1056 381 FGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 381 s~~~a~~l~~~Gvd~i~v 398 (590)
+.++|.+++.+|||++-+
T Consensus 255 ~~~da~~~l~~GAd~V~i 272 (314)
T 2e6f_A 255 SGEDAFLHILAGASMVQV 272 (314)
T ss_dssp SHHHHHHHHHHTCSSEEE
T ss_pred CHHHHHHHHHcCCCEEEE
Confidence 999999999999999844
|
| >3sbf_A Mandelate racemase / muconate lactonizing enzyme; enolase fold, acid sugar dehydratase, D-araninonate, isomera; HET: EPE D8T; 1.50A {Vibrionales bacterium swat-3} PDB: 3r25_A 3dfh_A 4gis_A 4gir_A 4ggh_A 3gy1_A | Back alignment and structure |
|---|
Probab=86.26 E-value=6.5 Score=40.82 Aligned_cols=120 Identities=12% Similarity=-0.002 Sum_probs=78.5
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCC-Cc----------------------hhhHHHHHHHHHHhC-CCceEEeccc--cCc
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQ-GN----------------------SIYQIEMIKFIKKEY-PDMQVIGGNV--LFG 382 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~-G~----------------------~~~~l~~i~~i~~~~-~~vpvi~g~v--~s~ 382 (590)
+...+.++..++.|...+-+.... +. ....++.++.+|+.+ +++++++.-- -+.
T Consensus 135 e~~~~~a~~~~~~G~~~~K~KvG~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~v~avR~a~G~d~~l~vDan~~~~~ 214 (401)
T 3sbf_A 135 EGIYDLVEGFLEKGYKHIRCQLGFYGGVPTDLHTTQNPTEGSYYDQDQYMDNTLTMFKSLREKYGNQFHILHDVHERLFP 214 (401)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEESCCCSCGGGSCCCSSCCSSEECCHHHHHHHHHHHHHHHHHHHTTSSEEEEECTTCSCH
T ss_pred HHHHHHHHHHHHcCCCEEEEeeccCCcccccccccccccccccccchHHHHHHHHHHHHHHHHcCCCCEEEEECCCCCCH
Confidence 455667788888999988776421 10 123477888999887 5788886422 266
Q ss_pred HHHH----HHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcC-CCEEE
Q psy1056 383 YQPR----ATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALG-ASTAM 457 (590)
Q Consensus 383 ~~a~----~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalG-A~~v~ 457 (590)
++|. .|.+.|+++| +- . +... ....+ ++..+..++||++++.+.+..|+.+++..| +|.++
T Consensus 215 ~~A~~~~~~L~~~~i~~i----Eq--P---~~~~--~~~~~---~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ 280 (401)
T 3sbf_A 215 NQAIQFAKEVEQYKPYFI----ED--I---LPPN--QTEWL---DNIRSQSSVSLGLGELFNNPEEWKSLIANRRIDFIR 280 (401)
T ss_dssp HHHHHHHHHHGGGCCSCE----EC--S---SCTT--CGGGH---HHHHTTCCCCEEECTTCCSHHHHHHHHHTTCCSEEC
T ss_pred HHHHHHHHHHHhcCCCEE----EC--C---CChh--HHHHH---HHHHhhCCCCEEeCCccCCHHHHHHHHhcCCCCEEe
Confidence 6664 4455788888 21 1 1100 22223 333345579999999999999999999987 67776
Q ss_pred ECccc
Q psy1056 458 MGSLL 462 (590)
Q Consensus 458 ~g~~l 462 (590)
+-...
T Consensus 281 ~k~~~ 285 (401)
T 3sbf_A 281 CHVSQ 285 (401)
T ss_dssp CCGGG
T ss_pred cCccc
Confidence 65433
|
| >3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A* | Back alignment and structure |
|---|
Probab=86.20 E-value=2.3 Score=43.67 Aligned_cols=65 Identities=22% Similarity=0.352 Sum_probs=49.4
Q ss_pred HHHHHHHHcCCcEEEEecCC--Cc---h----------hhHHHHHHHHHHhCCCceEEe-ccccCcHHHHHHHHCCCCEE
Q psy1056 333 NRLKLLSQAGVDVVILDSSQ--GN---S----------IYQIEMIKFIKKEYPDMQVIG-GNVLFGYQPRATLLNFIYQI 396 (590)
Q Consensus 333 e~~~~li~~gad~i~V~~~~--G~---~----------~~~l~~i~~i~~~~~~vpvi~-g~v~s~~~a~~l~~~Gvd~i 396 (590)
+.+..+.+.|+|.+.++... |+ . ....+.+..+++.. ++|+++ |++.+++++.+++++|+|+|
T Consensus 156 ~~a~~a~~~GaD~i~v~g~~~GGh~g~~~~~~~~~~~~~~~~~~l~~i~~~~-~iPViaaGGI~~~~~~~~~l~~GAd~V 234 (369)
T 3bw2_A 156 EEARAVEAAGADAVIAQGVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREAV-DIPVVAAGGIMRGGQIAAVLAAGADAA 234 (369)
T ss_dssp HHHHHHHHTTCSEEEEECTTCSEECCCSSCCGGGTTCCCCHHHHHHHHHHHC-SSCEEEESSCCSHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHcCCCEEEEeCCCcCCcCCCcccccccccccccHHHHHHHHHHhc-CceEEEECCCCCHHHHHHHHHcCCCEE
Confidence 44667788999999996532 11 1 23467788888776 789885 66669999999999999999
Q ss_pred EE
Q psy1056 397 EM 398 (590)
Q Consensus 397 ~v 398 (590)
.+
T Consensus 235 ~v 236 (369)
T 3bw2_A 235 QL 236 (369)
T ss_dssp EE
T ss_pred EE
Confidence 76
|
| >2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A* | Back alignment and structure |
|---|
Probab=86.20 E-value=3.8 Score=41.66 Aligned_cols=69 Identities=16% Similarity=0.032 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCch-----hhHHHHHHHHHHhC-CCceEEecccc-----CcHHHHHHHHCCCCEEEE
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNS-----IYQIEMIKFIKKEY-PDMQVIGGNVL-----FGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~-----~~~l~~i~~i~~~~-~~vpvi~g~v~-----s~~~a~~l~~~Gvd~i~v 398 (590)
.....++.+++.|++.+.+..+.|.. +.-.+.++...+.. ..+||++|-.. +.+-++.+.++|+|++-+
T Consensus 53 ~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~Gadavlv 132 (343)
T 2v9d_A 53 GTAALIDDLIKAGVDGLFFLGSGGEFSQLGAEERKAIARFAIDHVDRRVPVLIGTGGTNARETIELSQHAQQAGADGIVV 132 (343)
T ss_dssp HHHHHHHHHHHTTCSCEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCSSCHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 34567888999999999987766643 12244555555443 36899986554 345566777899999955
|
| >2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A | Back alignment and structure |
|---|
Probab=86.18 E-value=4.2 Score=40.54 Aligned_cols=69 Identities=10% Similarity=0.107 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCchh-----hHHHHHHHHHHhC-CCceEEecccc-----CcHHHHHHHHCCCCEEEE
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNSI-----YQIEMIKFIKKEY-PDMQVIGGNVL-----FGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~~-----~~l~~i~~i~~~~-~~vpvi~g~v~-----s~~~a~~l~~~Gvd~i~v 398 (590)
.....++.+++.|++.+.+..+.|... .-.+.++...+.. ..+||++|-.. +.+-++.+.++|+|++-+
T Consensus 33 ~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv 112 (303)
T 2wkj_A 33 SLRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVAEEAKGKIKLIAHVGCVSTAESQQLAASAKRYGFDAVSA 112 (303)
T ss_dssp HHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHHcCCCEEEECeeccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhCCCCEEEe
Confidence 345678889999999999887666431 2244555555443 36899986544 345566777899999955
|
| >3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A* | Back alignment and structure |
|---|
Probab=86.16 E-value=2.5 Score=41.54 Aligned_cols=60 Identities=20% Similarity=0.140 Sum_probs=46.5
Q ss_pred HHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCC-CceEEec-cccCcHHHHHHHHCCCCEEEE
Q psy1056 337 LLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYP-DMQVIGG-NVLFGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 337 ~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~-~vpvi~g-~v~s~~~a~~l~~~Gvd~i~v 398 (590)
.-.+.|..++.++.+. .....+.++.+++..+ ++|+++| +|.|.++++++.++|||.|.|
T Consensus 194 ~gad~G~~lV~LD~~~--~~v~~e~V~~I~~~~~~~iPV~vGGGIrs~Eda~~ll~aGAD~VVV 255 (286)
T 3vk5_A 194 VARAFGFHMVYLYSRN--EHVPPEVVRHFRKGLGPDQVLFVSGNVRSGRQVTEYLDSGADYVGF 255 (286)
T ss_dssp HHHHTTCSEEEEECSS--SCCCHHHHHHHHHHSCTTCEEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHcCCCEEEEcCCC--CcCCHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHcCCCEEEE
Confidence 3357788999888643 3334688888888874 6899876 566999999999999999955
|
| >3tji_A Mandelate racemase/muconate lactonizing enzyme, N domain protein; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.80A {Enterobacter SP} | Back alignment and structure |
|---|
Probab=86.13 E-value=5.1 Score=41.93 Aligned_cols=118 Identities=14% Similarity=0.044 Sum_probs=78.1
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCC-Cc----------------------hhhHHHHHHHHHHhC-CCceEEecc--ccCc
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQ-GN----------------------SIYQIEMIKFIKKEY-PDMQVIGGN--VLFG 382 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~-G~----------------------~~~~l~~i~~i~~~~-~~vpvi~g~--v~s~ 382 (590)
+...+.++..++.|...+-+.... +. ....++.++.+|+.+ |++++++.- .-+.
T Consensus 156 e~~~~~a~~~~~~G~~~iKlKvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~e~v~avR~avG~d~~L~vDaN~~~~~ 235 (422)
T 3tji_A 156 EALFASVDALIAQGYRHIRCQLGFYGGTPSALHAPDNPTPGAWFDQQEYMSNTVEMFHALREKYGWKLHILHDVHERLFP 235 (422)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEESCCCBCGGGSCCCSSCCSSEECCHHHHHHHHHHHHHHHHHHHCSSSEEEEECTTCSCH
T ss_pred HHHHHHHHHHHHcCCCEEEEeeccCCcccccccccccccccccccchhHHHHHHHHHHHHHHHcCCCCEEEEECCCCCCH
Confidence 455667788888999998876532 10 123477889999887 578888632 2266
Q ss_pred HHHH----HHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcC-CCEEE
Q psy1056 383 YQPR----ATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALG-ASTAM 457 (590)
Q Consensus 383 ~~a~----~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalG-A~~v~ 457 (590)
++|. .|.+.|+++| +- . +... ....+.++++ ..++||++++.+.+..++.+++..| +|.++
T Consensus 236 ~~A~~~~~~Le~~~i~~i----Eq--P---~~~~--d~~~~~~l~~---~~~iPIa~dE~~~~~~~~~~ll~~ga~d~v~ 301 (422)
T 3tji_A 236 QQAVQLAKQLEPFQPYFI----ED--I---LPPQ--QSAWLEQVRQ---QSCVPLALGELFNNPAEWHDLIVNRRIDFIR 301 (422)
T ss_dssp HHHHHHHHHHGGGCCSEE----EC--C---SCGG--GGGGHHHHHH---HCCCCEEECTTCCSGGGTHHHHHTTCCSEEC
T ss_pred HHHHHHHHHHHhhCCCeE----EC--C---CChh--hHHHHHHHHh---hCCCCEEEeCCcCCHHHHHHHHhcCCCCEEe
Confidence 6664 4455788888 21 1 1100 2233334443 4579999999999999999999987 67876
Q ss_pred ECc
Q psy1056 458 MGS 460 (590)
Q Consensus 458 ~g~ 460 (590)
+-.
T Consensus 302 ~k~ 304 (422)
T 3tji_A 302 CHV 304 (422)
T ss_dssp CCG
T ss_pred cCc
Confidence 654
|
| >1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A* | Back alignment and structure |
|---|
Probab=85.97 E-value=1.3 Score=44.08 Aligned_cols=67 Identities=18% Similarity=0.223 Sum_probs=48.8
Q ss_pred HHHHHHHHHHcCCcEEEEecC---------C----------Cch-h----hHHHHHHHHHHhCCCceEEe-ccccCcHHH
Q psy1056 331 DKNRLKLLSQAGVDVVILDSS---------Q----------GNS-I----YQIEMIKFIKKEYPDMQVIG-GNVLFGYQP 385 (590)
Q Consensus 331 ~~e~~~~li~~gad~i~V~~~---------~----------G~~-~----~~l~~i~~i~~~~~~vpvi~-g~v~s~~~a 385 (590)
..+.++.+.++|++.+.+... . |.. . ..++.++.+++.. ++|+++ |++.+.+++
T Consensus 178 ~~~~a~~l~~~G~d~i~v~~~~~g~~i~~~~~~~~~~~~~~g~~g~~~~~~~~~~i~~i~~~~-~ipvia~GGI~~~~d~ 256 (311)
T 1ep3_A 178 IVPIAKAVEAAGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQVAQDV-DIPIIGMGGVANAQDV 256 (311)
T ss_dssp SHHHHHHHHHTTCSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHHHHHHHHHHHTTC-SSCEEECSSCCSHHHH
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccccCcccCCccccCCCCcccCccchHHHHHHHHHHHHhc-CCCEEEECCcCCHHHH
Confidence 346678888999999988320 0 111 0 1257778888776 789885 677799999
Q ss_pred HHHHHCCCCEEEE
Q psy1056 386 RATLLNFIYQIEM 398 (590)
Q Consensus 386 ~~l~~~Gvd~i~v 398 (590)
.+++++|||++-+
T Consensus 257 ~~~l~~GAd~V~v 269 (311)
T 1ep3_A 257 LEMYMAGASAVAV 269 (311)
T ss_dssp HHHHHHTCSEEEE
T ss_pred HHHHHcCCCEEEE
Confidence 9999999999944
|
| >3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Burkholderia thailandensis} SCOP: c.1.12.8 PDB: 3ez4_A | Back alignment and structure |
|---|
Probab=85.90 E-value=6.9 Score=38.29 Aligned_cols=95 Identities=9% Similarity=-0.030 Sum_probs=61.4
Q ss_pred HHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEE--cccccccCCCcccccc-chhH-HHHHHHHHhcC-CCcE
Q psy1056 359 IEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEM--IKFIKKEYPDMQVIGR-NGTA-VYRVAEYASRR-GVPV 433 (590)
Q Consensus 359 l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v--~~~~~~~~~~~~~~g~-~~~~-l~~~~~~~~~~-~v~i 433 (590)
+..++.+++. +-|+++-++=+.-.|+.+.++|+|+|-+ |...... |..+.+. |.+- +..++..++.. ..||
T Consensus 18 ~~~lr~~~~~--g~~i~m~tayDa~sA~l~e~aG~d~ilvGdSl~~~~l--G~~dt~~vtldem~~h~~aV~r~~~~~~v 93 (275)
T 3vav_A 18 VPKLQAMREA--GEKIAMLTCYDASFAALLDRANVDVQLIGDSLGNVLQ--GQTTTLPVTLDDIAYHTACVARAQPRALI 93 (275)
T ss_dssp HHHHHHHHHH--TCCEEEEECCSHHHHHHHHHTTCSEEEECTTHHHHTT--CCSSSTTCCHHHHHHHHHHHHHTCCSSEE
T ss_pred HHHHHHHHHC--CCcEEEEeCcCHHHHHHHHHcCCCEEEECcHHHHHHc--CCCCCCccCHHHHHHHHHHHHhcCCCCCE
Confidence 4455556665 4567777888999999999999999955 2221111 1333333 4443 33455555554 3889
Q ss_pred Eec---CCCCCHHHHH----HHHHcCCCEEE
Q psy1056 434 IAD---GGVQSVGHVM----KALALGASTAM 457 (590)
Q Consensus 434 ia~---GGi~~~~di~----kalalGA~~v~ 457 (590)
++| ||..++.+++ +.+..||++|-
T Consensus 94 vaD~pfgsY~s~~~a~~~a~rl~kaGa~aVk 124 (275)
T 3vav_A 94 VADLPFGTYGTPADAFASAVKLMRAGAQMVK 124 (275)
T ss_dssp EEECCTTSCSSHHHHHHHHHHHHHTTCSEEE
T ss_pred EEecCCCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 996 4577888875 45667999993
|
| >3bjs_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI-2, protein struc initiative; 2.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=85.81 E-value=5.6 Score=41.71 Aligned_cols=116 Identities=11% Similarity=0.014 Sum_probs=78.5
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhC-CCceEEecc--ccCcHHH----HHHHHCCCCEEEEccc
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEY-PDMQVIGGN--VLFGYQP----RATLLNFIYQIEMIKF 401 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~-~~vpvi~g~--v~s~~~a----~~l~~~Gvd~i~v~~~ 401 (590)
+...+.+..+.+.|.+.+-+...+ +....++.++.+++.+ +++++.+.- .-+.++| +.|.+.|+++| +
T Consensus 187 e~~~~~a~~~~~~Gf~~vKik~g~-~~~~d~e~v~avR~avG~d~~l~vDan~~~~~~eai~~~~~L~~~~i~~i----E 261 (428)
T 3bjs_A 187 ESLAEEAQEYIARGYKALKLRIGD-AARVDIERVRHVRKVLGDEVDILTDANTAYTMADARRVLPVLAEIQAGWL----E 261 (428)
T ss_dssp HHHHHHHHHHHHHTCSEEEEECCS-CHHHHHHHHHHHHHHHCTTSEEEEECTTCCCHHHHHHHHHHHHHTTCSCE----E
T ss_pred HHHHHHHHHHHHCCCCEEEECCCC-CHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCEE----E
Confidence 445567778888999999887654 3345578889999876 578887642 2255555 45666899888 2
Q ss_pred ccccCCCccccccchhHHHHHHHHHhcCC-CcEEecCCCCCHHHHHHHHHcC-CCEEEEC
Q psy1056 402 IKKEYPDMQVIGRNGTAVYRVAEYASRRG-VPVIADGGVQSVGHVMKALALG-ASTAMMG 459 (590)
Q Consensus 402 ~~~~~~~~~~~g~~~~~l~~~~~~~~~~~-v~iia~GGi~~~~di~kalalG-A~~v~~g 459 (590)
-- + ....+...++..+..+ +||++++.+.+..++.+++..| +|.|++-
T Consensus 262 qP-----~-----~~~d~~~~~~l~~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik 311 (428)
T 3bjs_A 262 EP-----F-----ACNDFASYREVAKITPLVPIAAGENHYTRFEFGQMLDAGAVQVWQPD 311 (428)
T ss_dssp CC-----S-----CTTCHHHHHHHTTTCSSSCEEECTTCCSHHHHHHHHTTCCEEEECCB
T ss_pred CC-----C-----CccCHHHHHHHHHhCCCCcEEcCCCcCCHHHHHHHHHhCCCCEEEeC
Confidence 11 1 1111223344444557 9999999999999999999887 5666553
|
| >1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A | Back alignment and structure |
|---|
Probab=85.66 E-value=5.3 Score=39.68 Aligned_cols=94 Identities=11% Similarity=0.047 Sum_probs=62.8
Q ss_pred HHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEc---ccccccCCCcccccc-chhHH-HHHHHHHhcCCCcEEe
Q psy1056 361 MIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMI---KFIKKEYPDMQVIGR-NGTAV-YRVAEYASRRGVPVIA 435 (590)
Q Consensus 361 ~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~---~~~~~~~~~~~~~g~-~~~~l-~~~~~~~~~~~v~iia 435 (590)
.+..+.+. +-|+.+-++-+.-.|+.+.++|+|+|.++ +..... |..+.+. +.+.+ ..++..+...++|||+
T Consensus 8 ~lr~l~~~--~~~i~~~~a~D~~sA~~~~~aG~~ai~vs~~~~a~~~~--G~pD~~~vt~~em~~~~~~I~~~~~~Pvia 83 (295)
T 1xg4_A 8 AFRAALTK--ENPLQIVGTINANHALLAQRAGYQAIYLSGGGVAAGSL--GLPDLGISTLDDVLTDIRRITDVCSLPLLV 83 (295)
T ss_dssp HHHHHHHH--SSSEEEEECSSHHHHHHHHHTTCSCEEECHHHHHHTTT--CCCSSSCSCHHHHHHHHHHHHHHCCSCEEE
T ss_pred HHHHHHhC--CCcEEEecCcCHHHHHHHHHcCCCEEEECchHhhhhhc--CCCCCCCCCHHHHHHHHHHHHhhCCCCEEe
Confidence 34444444 45777778889999999999999999882 222111 2445555 65543 3455565566799999
Q ss_pred cC--CCC-CHHHHHH----HHHcCCCEEEE
Q psy1056 436 DG--GVQ-SVGHVMK----ALALGASTAMM 458 (590)
Q Consensus 436 ~G--Gi~-~~~di~k----alalGA~~v~~ 458 (590)
|. |.. ++.++++ ....||++|-+
T Consensus 84 D~d~Gyg~~~~~~~~~v~~l~~aGa~gv~i 113 (295)
T 1xg4_A 84 DADIGFGSSAFNVARTVKSMIKAGAAGLHI 113 (295)
T ss_dssp ECTTCSSSSHHHHHHHHHHHHHHTCSEEEE
T ss_pred cCCcccCCCHHHHHHHHHHHHHcCCeEEEE
Confidence 76 765 6766654 45679999944
|
| >3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A | Back alignment and structure |
|---|
Probab=85.66 E-value=4.1 Score=40.71 Aligned_cols=69 Identities=9% Similarity=0.021 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCch-----hhHHHHHHHHHHhC-CCceEEecccc-----CcHHHHHHHHCCCCEEEE
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNS-----IYQIEMIKFIKKEY-PDMQVIGGNVL-----FGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~-----~~~l~~i~~i~~~~-~~vpvi~g~v~-----s~~~a~~l~~~Gvd~i~v 398 (590)
.....++.+++.|++.+.+..+.|.. +.-.+.++...+.. ..+||++|-.. +.+-++.+.++|+|++-+
T Consensus 36 ~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Gadavlv 115 (307)
T 3s5o_A 36 KLEENLHKLGTFPFRGFVVQGSNGEFPFLTSSERLEVVSRVRQAMPKNRLLLAGSGCESTQATVEMTVSMAQVGADAAMV 115 (307)
T ss_dssp HHHHHHHHHTTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHTSCTTSEEEEECCCSSHHHHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHcCCCCcEEEecCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 34557888889999999987766543 22345566666654 36899986543 345567788899999955
|
| >3fs2_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, bruciellla melitensis, DAHP synthetase I, cytoplasm, lipopolysaccharide biosynthesis; HET: PG4; 1.85A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=85.58 E-value=3.5 Score=40.86 Aligned_cols=114 Identities=15% Similarity=0.092 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccC------cHHHHHHHHCCCCEEEEccccccc
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLF------GYQPRATLLNFIYQIEMIKFIKKE 405 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s------~~~a~~l~~~Gvd~i~v~~~~~~~ 405 (590)
.+.++.+.+. +|++.|-..+-.. .+.++++... +.||++++..+ ...+..+.+.|-+-|.+--|++..
T Consensus 122 ~~~v~~l~~~-vd~lkIgA~~~~n---~~LLr~va~~--gkPVilK~Gms~t~~ei~~ave~i~~~Gn~~iiL~erg~~y 195 (298)
T 3fs2_A 122 EEQCAAVAPV-VDVLQIPAFLCRQ---TDLLIAAART--GRVVNVKKGQFLAPWDMKNVLAKITESGNPNVLATERGVSF 195 (298)
T ss_dssp HHHHHHHTTT-CSEEEECGGGTTC---HHHHHHHHHT--TSEEEEECCTTCCGGGHHHHHHHHHTTTCCCEEEEECCEEC
T ss_pred HHHHHHHHhh-CCEEEECccccCC---HHHHHHHHcc--CCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCC
Q ss_pred CCCcccccc-chhHHHHHHHHHhcCCCcEEec---------------CCCCCHHHHH--HHHHcCCCEEEE
Q psy1056 406 YPDMQVIGR-NGTAVYRVAEYASRRGVPVIAD---------------GGVQSVGHVM--KALALGASTAMM 458 (590)
Q Consensus 406 ~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~---------------GGi~~~~di~--kalalGA~~v~~ 458 (590)
++ +...-.......++.++||+.| ||-|.-.-.+ .|.|+|||++++
T Consensus 196 -------~~~~~~vdl~~i~~lk~~~~PV~~D~sHsvq~p~~~~~~s~G~r~~v~~~a~AAvAlGAdGl~I 259 (298)
T 3fs2_A 196 -------GYNTLVSDMRALPIMAGLGAPVIFDATHSVQQPGGQGGSTGGQREFVETLARAAVAVGVAGFFI 259 (298)
T ss_dssp -------SSSCEECCTTHHHHHHTTTSCEEEEHHHHTCCCC--------CGGGHHHHHHHHHHHCCSEEEE
T ss_pred -------CCCCCccCHHHHHHHHHcCCcEEEcCCCccccCCcccCCCCCchhhHHHHHHHHHHcCCCEEEE
|
| >1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A* | Back alignment and structure |
|---|
Probab=85.50 E-value=2.3 Score=42.03 Aligned_cols=65 Identities=8% Similarity=0.006 Sum_probs=51.9
Q ss_pred HHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEE
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v 398 (590)
.+.+.+.+++|+|++.+|.- ....+.+.++.++..++++++.+-+..++++++.+.+.|||+|.+
T Consensus 204 ~eea~eal~aGaD~I~LDn~--~~~~~~~~v~~l~~~~~~v~ieaSGGIt~~~i~~~a~tGVD~isv 268 (284)
T 1qpo_A 204 LEQLDAVLPEKPELILLDNF--AVWQTQTAVQRRDSRAPTVMLESSGGLSLQTAATYAETGVDYLAV 268 (284)
T ss_dssp HHHHHHHGGGCCSEEEEETC--CHHHHHHHHHHHHHHCTTCEEEEESSCCTTTHHHHHHTTCSEEEC
T ss_pred HHHHHHHHHcCCCEEEECCC--CHHHHHHHHHHhhccCCCeEEEEECCCCHHHHHHHHhcCCCEEEE
Confidence 46677778899999998874 334556677777776677888887778999999999999999965
|
| >1nsj_A PRAI, phosphoribosyl anthranilate isomerase; thermostability; 2.00A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1lbm_A 1dl3_A | Back alignment and structure |
|---|
Probab=85.49 E-value=4.4 Score=37.93 Aligned_cols=115 Identities=18% Similarity=0.158 Sum_probs=66.0
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEE-eccccCcHHHHHHHHCCCCEEEEcccccccCCCc
Q psy1056 331 DKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVI-GGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDM 409 (590)
Q Consensus 331 ~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi-~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~ 409 (590)
..+..+.+...+.+++.+|..+. .+.++.++. ..|++ +=.+.+.++...+.+..+|++-+.-... . .
T Consensus 65 ~~~i~~~~~~~~ld~vQLHG~e~-----~~~~~~l~~---~~~vika~~v~~~~~l~~~~~~~~d~~LlD~~~~-~---~ 132 (205)
T 1nsj_A 65 PEKILDVASYVQLNAVQLHGEEP-----IELCRKIAE---RILVIKAVGVSNERDMERALNYREFPILLDTKTP-E---Y 132 (205)
T ss_dssp HHHHHHHHHHHTCSEEEECSCCC-----HHHHHHHHT---TSEEEEEEEESSHHHHHHHGGGTTSCEEEEESCS-S---S
T ss_pred HHHHHHHHHhhCCCEEEECCCCC-----HHHHHHHhc---CCCEEEEEEcCCHHHHHHHHHcCCCEEEECCCCC-C---C
Confidence 34555556667999999975442 234444542 35665 2234455555555455589885521110 1 1
Q ss_pred ccccc--chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHH-cCCCEEEECccc
Q psy1056 410 QVIGR--NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALA-LGASTAMMGSLL 462 (590)
Q Consensus 410 ~~~g~--~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kala-lGA~~v~~g~~l 462 (590)
.|.|. ..+.+.. .. ....|+|.+||+ |+..+..|+. +++.+|=+.+-+
T Consensus 133 GGtG~~fdw~~l~~---~~-~~~~p~~LAGGL-~peNV~~ai~~~~p~gVDvsSGv 183 (205)
T 1nsj_A 133 GGSGKTFDWSLILP---YR-DRFRYLVLSGGL-NPENVRSAIDVVRPFAVDVSSGV 183 (205)
T ss_dssp SSCCSCCCGGGTGG---GG-GGSSCEEEESSC-CTTTHHHHHHHHCCSEEEESGGG
T ss_pred CCCCCccCHHHHHh---hh-cCCCcEEEECCC-CHHHHHHHHHhcCCCEEEECCce
Confidence 12222 1111111 10 124799999999 8999999987 699999887766
|
| >1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A* | Back alignment and structure |
|---|
Probab=85.47 E-value=2.7 Score=42.84 Aligned_cols=66 Identities=18% Similarity=0.172 Sum_probs=47.4
Q ss_pred HHHHHHHHcCCcEEEEecCCCc--------h------------hhHHHHHHHHHHhCCCceEE-eccccCcHHHHHHHHC
Q psy1056 333 NRLKLLSQAGVDVVILDSSQGN--------S------------IYQIEMIKFIKKEYPDMQVI-GGNVLFGYQPRATLLN 391 (590)
Q Consensus 333 e~~~~li~~gad~i~V~~~~G~--------~------------~~~l~~i~~i~~~~~~vpvi-~g~v~s~~~a~~l~~~ 391 (590)
+.+..+.++|+|.+.+....|. + ....+.+..+++..+++|++ .|+|.+.+++.+++.+
T Consensus 193 ~~a~~a~~~Gad~I~v~~~ggt~~~~~e~~r~~~~~~~~~~~g~~~~~~l~~v~~~~~~ipvia~GGI~~~~d~~k~l~~ 272 (349)
T 1p0k_A 193 ASAGKLYEAGAAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGISTAASLAEIRSEFPASTMIASGGLQDALDVAKAIAL 272 (349)
T ss_dssp HHHHHHHHHTCSEEEEEC---------------CCGGGGTTCSCCHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHT
T ss_pred HHHHHHHHcCCCEEEEcCCCCcchhhHHHhhcccchhhhhccCccHHHHHHHHHHhcCCCeEEEECCCCCHHHHHHHHHc
Confidence 5567788899999988532220 0 11245677777766679988 4788899999999999
Q ss_pred CCCEEEE
Q psy1056 392 FIYQIEM 398 (590)
Q Consensus 392 Gvd~i~v 398 (590)
|||++-+
T Consensus 273 GAd~V~i 279 (349)
T 1p0k_A 273 GASCTGM 279 (349)
T ss_dssp TCSEEEE
T ss_pred CCCEEEE
Confidence 9999944
|
| >2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis} | Back alignment and structure |
|---|
Probab=85.41 E-value=3.3 Score=41.21 Aligned_cols=112 Identities=13% Similarity=0.102 Sum_probs=64.4
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCch-----hhHHHHHHHHHHhC-CCceEEecccc-----CcHHHHHHHHCCCCEEEE
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNS-----IYQIEMIKFIKKEY-PDMQVIGGNVL-----FGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~-----~~~l~~i~~i~~~~-~~vpvi~g~v~-----s~~~a~~l~~~Gvd~i~v 398 (590)
.....++.+++.|++.+.+..+.|.. +.-.+.++...+.. ..+||++|-.. +.+-++.+.++|+|++-+
T Consensus 22 ~l~~lv~~li~~Gv~gi~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~Gadavlv 101 (297)
T 2rfg_A 22 ALAGLVDWQIKHGAHGLVPVGTTGESPTLTEEEHKRVVALVAEQAQGRVPVIAGAGSNNPVEAVRYAQHAQQAGADAVLC 101 (297)
T ss_dssp HHHHHHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEccCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 34567888999999999887665533 12244555555433 25899986554 345567777899999955
Q ss_pred -cccccccCCCccccccchhHHH-HHHHHHhcCCCcEEe-c----CCCCCHHHHHHHHH
Q psy1056 399 -IKFIKKEYPDMQVIGRNGTAVY-RVAEYASRRGVPVIA-D----GGVQSVGHVMKALA 450 (590)
Q Consensus 399 -~~~~~~~~~~~~~~g~~~~~l~-~~~~~~~~~~v~iia-~----GGi~~~~di~kala 450 (590)
.+.-. ..+...+. -....+...++|||. . .|+.-+.+..+.|+
T Consensus 102 ~~P~y~---------~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La 151 (297)
T 2rfg_A 102 VAGYYN---------RPSQEGLYQHFKMVHDAIDIPIIVYNIPPRAVVDIKPETMARLA 151 (297)
T ss_dssp CCCTTT---------CCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHH
T ss_pred cCCCCC---------CCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHH
Confidence 21111 11222222 233344445688776 1 35554555555665
|
| >3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A* | Back alignment and structure |
|---|
Probab=85.39 E-value=2.1 Score=43.65 Aligned_cols=67 Identities=15% Similarity=0.085 Sum_probs=50.2
Q ss_pred hHHHHHHHHHHcCCcEEEEecCC--Cc------hhhHHHHHHHHHHhCCCceEEe-ccccCcHHHHHHHHCC-CCEEE
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQ--GN------SIYQIEMIKFIKKEYPDMQVIG-GNVLFGYQPRATLLNF-IYQIE 397 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~--G~------~~~~l~~i~~i~~~~~~vpvi~-g~v~s~~~a~~l~~~G-vd~i~ 397 (590)
+..+.++.+.+.|++.+++.... .. .....+.++.+++.+ ++|+++ |.+.++++|.++++.| +|.|-
T Consensus 240 ~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~~-~iPVi~~Ggi~t~e~a~~~l~~G~aD~V~ 316 (349)
T 3hgj_A 240 DTLAFARRLKELGVDLLDCSSGGVVLRVRIPLAPGFQVPFADAVRKRV-GLRTGAVGLITTPEQAETLLQAGSADLVL 316 (349)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCCSCSSSCCCCCTTTTHHHHHHHHHHH-CCEEEECSSCCCHHHHHHHHHTTSCSEEE
T ss_pred HHHHHHHHHHHcCCCEEEEecCCcCcccccCCCccccHHHHHHHHHHc-CceEEEECCCCCHHHHHHHHHCCCceEEE
Confidence 45667888999999999987411 10 112367788888877 789885 4566999999999999 99983
|
| >2qiw_A PEP phosphonomutase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=85.35 E-value=4.8 Score=39.06 Aligned_cols=92 Identities=12% Similarity=-0.038 Sum_probs=60.2
Q ss_pred HHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEc---ccccccCCCcccccc-chhH-HHHHHHHHhcCCCcEEec
Q psy1056 362 IKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMI---KFIKKEYPDMQVIGR-NGTA-VYRVAEYASRRGVPVIAD 436 (590)
Q Consensus 362 i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~---~~~~~~~~~~~~~g~-~~~~-l~~~~~~~~~~~v~iia~ 436 (590)
++.+++. +-|+++-++-+.-.|+.+.++|+|+|.++ ..... |+.+.+. +.+. +..++..+...++|||+|
T Consensus 12 lr~l~~~--~~~i~~~~ayD~~sA~~~~~aG~dai~vg~~s~a~~~---G~pD~~~vt~~em~~~~~~I~r~~~~pviaD 86 (255)
T 2qiw_A 12 FASDHES--GKLLVLPTVWDTWSAGLVEEAGFSGLTIGSHPVADAT---GSSDGENMNFADYMAVVKKITSAVSIPVSVD 86 (255)
T ss_dssp HHHHHHT--CCCEECCEESSHHHHHHHHHTTCSCEEECHHHHHHHT---TCCTTTCSCHHHHHHHHHHHHHHCSSCEEEE
T ss_pred HHHHHhC--CCcEEEecCcCHHHHHHHHHcCCCEEEEChHHHHHhC---CCCCCCCcCHHHHHHHHHHHHhcCCCCEEec
Confidence 4444443 45788778889999999999999999883 22222 2444444 5554 344555555667999996
Q ss_pred C--CCCC--HHHHHHHHHcCCCEEEE
Q psy1056 437 G--GVQS--VGHVMKALALGASTAMM 458 (590)
Q Consensus 437 G--Gi~~--~~di~kalalGA~~v~~ 458 (590)
. |..+ -.-+.+.+..||++|-+
T Consensus 87 ~~~Gyg~~~~~~~~~l~~aGa~gv~i 112 (255)
T 2qiw_A 87 VESGYGLSPADLIAQILEAGAVGINV 112 (255)
T ss_dssp CTTCTTCCHHHHHHHHHHTTCCEEEE
T ss_pred cCCCcCcHHHHHHHHHHHcCCcEEEE
Confidence 5 6543 23344566789999944
|
| >3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A | Back alignment and structure |
|---|
Probab=85.32 E-value=3.8 Score=40.96 Aligned_cols=69 Identities=10% Similarity=-0.009 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCch-----hhHHHHHHHHHHhC-CCceEEecccc-----CcHHHHHHHHCCCCEEEE
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNS-----IYQIEMIKFIKKEY-PDMQVIGGNVL-----FGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~-----~~~l~~i~~i~~~~-~~vpvi~g~v~-----s~~~a~~l~~~Gvd~i~v 398 (590)
.....++.+++.|++.+.+..+.|.. +.-.+.++...+.. ..+||++|-.. +.+-++.+.++|+|++-+
T Consensus 30 ~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~Gadavlv 109 (309)
T 3fkr_A 30 SQKRAVDFMIDAGSDGLCILANFSEQFAITDDERDVLTRTILEHVAGRVPVIVTTSHYSTQVCAARSLRAQQLGAAMVMA 109 (309)
T ss_dssp HHHHHHHHHHHTTCSCEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHcCCCEEEECccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCCchHHHHHHHHHHHHHcCCCEEEE
Confidence 44567888999999999987665543 22244555555443 36899987544 445567788899999955
|
| >4dbe_A Orotidine 5'-phosphate decarboxylase; TIM barrel, orotidine 5'-monophosphate decarboxylase, inhibi lyase-lyase inhibitor complex; HET: BMP; 1.79A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=85.26 E-value=3.7 Score=39.04 Aligned_cols=68 Identities=15% Similarity=0.051 Sum_probs=45.7
Q ss_pred cHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCH-HHHHHHHHcCCCEEEECc
Q psy1056 382 GYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSV-GHVMKALALGASTAMMGS 460 (590)
Q Consensus 382 ~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~-~di~kalalGA~~v~~g~ 460 (590)
..-|+.+.++|++++ +|.... +..+..+++.+. + .++..+||+-. .+...|+..|||.+++||
T Consensus 125 ~~~a~~a~~~g~~Gv---V~sat~----------p~e~~~ir~~~~--~-~~~vtPGI~~~g~tp~~a~~~Gad~iVVGR 188 (222)
T 4dbe_A 125 DYIKNVIREISPKGI---VVGGTK----------LDHITQYRRDFE--K-MTIVSPGMGSQGGSYGDAVCAGADYEIIGR 188 (222)
T ss_dssp HHHHHHHHHHCCSEE---EECTTC----------HHHHHHHHHHCT--T-CEEEECCBSTTSBCTTHHHHHTCSEEEECH
T ss_pred HHHHHHHHHhCCCEE---EECCCC----------HHHHHHHHHhCC--C-CEEEcCCcccCccCHHHHHHcCCCEEEECH
Confidence 456677778999998 444321 122444555543 2 56777899753 256678889999999999
Q ss_pred cccCC
Q psy1056 461 LLAGT 465 (590)
Q Consensus 461 ~l~~~ 465 (590)
++..+
T Consensus 189 ~I~~A 193 (222)
T 4dbe_A 189 SIYNA 193 (222)
T ss_dssp HHHTS
T ss_pred HhcCC
Confidence 99654
|
| >1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A* | Back alignment and structure |
|---|
Probab=85.25 E-value=1.7 Score=44.09 Aligned_cols=66 Identities=15% Similarity=0.161 Sum_probs=49.8
Q ss_pred HHHHHHHHcCCcEEEEecCCCc--------h--------------hhHHHHHHHHHHhCCCceEE-eccccCcHHHHHHH
Q psy1056 333 NRLKLLSQAGVDVVILDSSQGN--------S--------------IYQIEMIKFIKKEYPDMQVI-GGNVLFGYQPRATL 389 (590)
Q Consensus 333 e~~~~li~~gad~i~V~~~~G~--------~--------------~~~l~~i~~i~~~~~~vpvi-~g~v~s~~~a~~l~ 389 (590)
+.+..+.++|+|.+.+....|. + ....+.+..+++..+++||+ .|++.+.+++.+++
T Consensus 196 e~a~~~~~~G~d~I~vs~~ggt~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~v~~~~~~ipvia~GGI~~~~d~~kal 275 (332)
T 1vcf_A 196 EAALALRDLPLAAVDVAGAGGTSWARVEEWVRFGEVRHPELCEIGIPTARAILEVREVLPHLPLVASGGVYTGTDGAKAL 275 (332)
T ss_dssp HHHHHHTTSCCSEEECCCBTSCCHHHHHHTC--------CCTTCSCBHHHHHHHHHHHCSSSCEEEESSCCSHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEeCCCCCCcchhHHHhhccccchhhhHhhccccHHHHHHHHHHhcCCCeEEEECCCCCHHHHHHHH
Confidence 4466788899999988543331 1 12356778888877678988 58888999999999
Q ss_pred HCCCCEEEE
Q psy1056 390 LNFIYQIEM 398 (590)
Q Consensus 390 ~~Gvd~i~v 398 (590)
.+|||++-+
T Consensus 276 ~~GAd~V~i 284 (332)
T 1vcf_A 276 ALGADLLAV 284 (332)
T ss_dssp HHTCSEEEE
T ss_pred HhCCChHhh
Confidence 999999944
|
| >3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=85.03 E-value=4.2 Score=40.17 Aligned_cols=92 Identities=13% Similarity=0.020 Sum_probs=62.7
Q ss_pred HHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEc---cccc-ccCCCcccccc-chhH-HHHHHHHHhcCCCcEEe
Q psy1056 362 IKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMI---KFIK-KEYPDMQVIGR-NGTA-VYRVAEYASRRGVPVIA 435 (590)
Q Consensus 362 i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~---~~~~-~~~~~~~~~g~-~~~~-l~~~~~~~~~~~v~iia 435 (590)
++.+.+. +-|+.+-++-+.-.|+.+.++|+|+|.++ +... .. ..+.+. +.+. +..++..+...++|||+
T Consensus 13 lr~l~~~--~~~i~~~~a~D~~sA~i~e~aGf~ai~vs~s~~a~~~lG---~pD~~~vt~~em~~~~~~I~r~~~~Pvia 87 (287)
T 3b8i_A 13 FRALLDS--SRCYHTASVFDPMSARIAADLGFECGILGGSVASLQVLA---APDFALITLSEFVEQATRIGRVARLPVIA 87 (287)
T ss_dssp HHHHHHS--SCCEECEECCSHHHHHHHHHTTCSCEEECHHHHHHHHHS---CCSSSCSCHHHHHHHHHHHHTTCSSCEEE
T ss_pred HHHHHhC--CCcEEEecCCCHHHHHHHHHcCCCEEEeCcHHHHHHhcC---CCCCCCCCHHHHHHHHHHHHhcCCCCEEE
Confidence 4444443 45777778889999999999999999882 2211 22 444455 6554 34456666666799999
Q ss_pred cC--CCCCHHHHHH----HHHcCCCEEEE
Q psy1056 436 DG--GVQSVGHVMK----ALALGASTAMM 458 (590)
Q Consensus 436 ~G--Gi~~~~di~k----alalGA~~v~~ 458 (590)
|. |..++.++++ .+..||++|-+
T Consensus 88 D~d~Gyg~~~~~~~~v~~l~~aGa~gv~i 116 (287)
T 3b8i_A 88 DADHGYGNALNVMRTVVELERAGIAALTI 116 (287)
T ss_dssp ECTTCSSSHHHHHHHHHHHHHHTCSEEEE
T ss_pred ECCCCCCCHHHHHHHHHHHHHhCCeEEEE
Confidence 65 6668777654 45679999954
|
| >3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8} | Back alignment and structure |
|---|
Probab=85.02 E-value=2 Score=43.34 Aligned_cols=65 Identities=18% Similarity=0.326 Sum_probs=49.6
Q ss_pred HHHHHHHHcCCcEEEEecCC--Cch--hhHHHHHHHHHHhCCCceEEe-ccccCcHHHHHHHHCCCCEEEE
Q psy1056 333 NRLKLLSQAGVDVVILDSSQ--GNS--IYQIEMIKFIKKEYPDMQVIG-GNVLFGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 333 e~~~~li~~gad~i~V~~~~--G~~--~~~l~~i~~i~~~~~~vpvi~-g~v~s~~~a~~l~~~Gvd~i~v 398 (590)
+.+..+.+.|+|.+.++... |+. ...++.+..+++.. ++|+++ |++.+.+++.++..+|++++.+
T Consensus 135 ~~a~~a~~~GaD~i~v~g~~~GG~~G~~~~~~ll~~i~~~~-~iPviaaGGI~~~~dv~~al~~GA~gV~v 204 (326)
T 3bo9_A 135 SLARMVERAGADAVIAEGMESGGHIGEVTTFVLVNKVSRSV-NIPVIAAGGIADGRGMAAAFALGAEAVQM 204 (326)
T ss_dssp HHHHHHHHTTCSCEEEECTTSSEECCSSCHHHHHHHHHHHC-SSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHcCCCEEEEECCCCCccCCCccHHHHHHHHHHHc-CCCEEEECCCCCHHHHHHHHHhCCCEEEe
Confidence 45566778999999997632 321 23467778888776 788884 7777899999999999999977
|
| >3ve9_A Orotidine-5'-phosphate decarboxylase; TIM barrel fold, orotidine 5'-monopho decarboxylase, lyase; 1.45A {Metallosphaera sedula} PDB: 3ve7_A | Back alignment and structure |
|---|
Probab=85.00 E-value=0.69 Score=43.91 Aligned_cols=67 Identities=15% Similarity=0.065 Sum_probs=44.8
Q ss_pred HHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCC-HHHHHHHHHcCCCEEEECcc
Q psy1056 383 YQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQS-VGHVMKALALGASTAMMGSL 461 (590)
Q Consensus 383 ~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~-~~di~kalalGA~~v~~g~~ 461 (590)
.-|+.+.++|++++ +|.... +..+..+++.+. + .++.++||+- +.+...|+..|||.+++||+
T Consensus 119 ~~a~~a~~~G~~Gv---V~sat~----------~~e~~~ir~~~~--~-f~~v~pGI~~~g~~~~~a~~~Gad~iVvGr~ 182 (215)
T 3ve9_A 119 YLREVARRVNPKGF---VAPATR----------PSMISRVKGDFP--D-KLVISPGVGTQGAKPGIALCHGADYEIVGRS 182 (215)
T ss_dssp HHHHHHHHHCCSEE---ECCTTS----------HHHHHHHHHHCT--T-SEEEECCTTSTTCCTTHHHHTTCSEEEECHH
T ss_pred HHHHHHHHcCCCce---eeCCCC----------HHHHHHHHHhCC--C-cEEEcCCCCcCcCCHHHHHHcCCCEEEeCHH
Confidence 34556667899988 454322 222344555443 3 6888999984 23677788899999999999
Q ss_pred ccCC
Q psy1056 462 LAGT 465 (590)
Q Consensus 462 l~~~ 465 (590)
+..+
T Consensus 183 I~~a 186 (215)
T 3ve9_A 183 VYQS 186 (215)
T ss_dssp HHTS
T ss_pred HcCC
Confidence 9644
|
| >2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=84.93 E-value=3.8 Score=40.64 Aligned_cols=98 Identities=13% Similarity=0.103 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCch-----hhHHHHHHHHHHhCCC-ceEEecccc-----CcHHHHHHHHCCCCEEE
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQGNS-----IYQIEMIKFIKKEYPD-MQVIGGNVL-----FGYQPRATLLNFIYQIE 397 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G~~-----~~~l~~i~~i~~~~~~-vpvi~g~v~-----s~~~a~~l~~~Gvd~i~ 397 (590)
+.....++.+++.|++.+.+..+.|.. +.-.+.++...+...+ +||++|-.. +.+-++.+.++|+|++-
T Consensus 21 ~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Gadavl 100 (292)
T 2vc6_A 21 VALHDLVEWQIEEGSFGLVPCGTTGESPTLSKSEHEQVVEITIKTANGRVPVIAGAGSNSTAEAIAFVRHAQNAGADGVL 100 (292)
T ss_dssp HHHHHHHHHHHHTTCSEEETTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCccHHHHHHHHHHHHHcCCCEEE
Q ss_pred E-cccccccCCCccccccchhHHHH-HHHHHhcCCCcEEe
Q psy1056 398 M-IKFIKKEYPDMQVIGRNGTAVYR-VAEYASRRGVPVIA 435 (590)
Q Consensus 398 v-~~~~~~~~~~~~~~g~~~~~l~~-~~~~~~~~~v~iia 435 (590)
+ .+.-.+. +...+.+ ....+...++|||.
T Consensus 101 v~~P~y~~~---------s~~~l~~~f~~ia~a~~lPiil 131 (292)
T 2vc6_A 101 IVSPYYNKP---------TQEGIYQHFKAIDAASTIPIIV 131 (292)
T ss_dssp EECCCSSCC---------CHHHHHHHHHHHHHHCSSCEEE
T ss_pred EcCCCCCCC---------CHHHHHHHHHHHHHhCCCCEEE
|
| >1dbt_A Orotidine 5'-phosphate decarboxylase; UMP, TIM barrel, lyase; HET: U5P; 2.40A {Bacillus subtilis} SCOP: c.1.2.3 | Back alignment and structure |
|---|
Probab=84.92 E-value=1.8 Score=41.68 Aligned_cols=143 Identities=15% Similarity=0.145 Sum_probs=69.8
Q ss_pred eEEeEeeccchhHH-HHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCC-Cc--e-EEeccccCcHHHHHH-HHCC
Q psy1056 319 LIVGAAIGTREADK-NRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYP-DM--Q-VIGGNVLFGYQPRAT-LLNF 392 (590)
Q Consensus 319 l~v~a~i~~~~~~~-e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~-~v--p-vi~g~v~s~~~a~~l-~~~G 392 (590)
+++..-+...+... ..++.+.+.|+|.+.++..-|.. -+...++.+++..+ +. | .+.=.+.|.-....+ .+.|
T Consensus 57 v~lD~kl~Dip~t~~~~~~~~~~~Gad~vtvH~~~g~~-~l~~~~~~~~~~~~~g~~~~~~~~V~~~ts~~~~~l~~~~~ 135 (239)
T 1dbt_A 57 LFLDLKLHDIPTTVNKAMKRLASLGVDLVNVHAAGGKK-MMQAALEGLEEGTPAGKKRPSLIAVTQLTSTSEQIMKDELL 135 (239)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHTTTCSEEEEEGGGCHH-HHHHHHHHHHHHSCTTSCCCEEEEECSCTTCCHHHHHHTSC
T ss_pred EEEEeccccchHHHHHHHHHHHhcCCCEEEEeCcCCHH-HHHHHHHHHHhhhccCCCCccEEEEEEcCCCCHHHHHHHhc
Confidence 34444444222222 35667888999999998866532 12345566665410 22 3 222123222112233 2322
Q ss_pred C--CEEEEcccccccCCCcccccc--chhHHHHHHHHHhcCCCcEEecCCCCCHHH----------HHHHHHcCCCEEEE
Q psy1056 393 I--YQIEMIKFIKKEYPDMQVIGR--NGTAVYRVAEYASRRGVPVIADGGVQSVGH----------VMKALALGASTAMM 458 (590)
Q Consensus 393 v--d~i~v~~~~~~~~~~~~~~g~--~~~~l~~~~~~~~~~~v~iia~GGi~~~~d----------i~kalalGA~~v~~ 458 (590)
. +..+.-...++...++.+.|+ ...-+..+++.+. ..+++.+|||+-... ...|+..|||.+++
T Consensus 136 ~~~~~~d~Vl~ma~~~~~~G~~g~v~~~~~i~~lr~~~~--~~~i~v~gGI~~~~~~~~dq~rv~tp~~a~~aGad~iVv 213 (239)
T 1dbt_A 136 IEKSLIDTVVHYSKQAEESGLDGVVCSVHEAKAIYQAVS--PSFLTVTPGIRMSEDAANDQVRVATPAIAREKGSSAIVV 213 (239)
T ss_dssp BCSCHHHHHHHHHHHHHHTTCSEEECCGGGHHHHTTTSC--TTCEEEECCBCCTTSCCTTCSSCBCHHHHHHTTCSEEEE
T ss_pred cCCCHHHHHHHHHHHHHHhCCCEEEECHHHHHHHHHhcC--CCcEEEeCCcCCCCCCccceeccCCHHHHHHcCCCEEEE
Confidence 1 101100001000000111222 2222334443321 367999999986544 46788999999999
Q ss_pred CccccC
Q psy1056 459 GSLLAG 464 (590)
Q Consensus 459 g~~l~~ 464 (590)
||.+..
T Consensus 214 Gr~I~~ 219 (239)
T 1dbt_A 214 GRSITK 219 (239)
T ss_dssp CHHHHT
T ss_pred ChhhcC
Confidence 998854
|
| >3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A | Back alignment and structure |
|---|
Probab=84.88 E-value=4 Score=40.43 Aligned_cols=69 Identities=14% Similarity=0.055 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCch-----hhHHHHHHHHHHhC-CCceEEecccc-----CcHHHHHHHHCCCCEEEE
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNS-----IYQIEMIKFIKKEY-PDMQVIGGNVL-----FGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~-----~~~l~~i~~i~~~~-~~vpvi~g~v~-----s~~~a~~l~~~Gvd~i~v 398 (590)
.....++.+++.|++.+.+..+.|.. +.-.+.++...+.. ..+||++|-.. +.+-++.+.++|+|++-+
T Consensus 24 ~l~~lv~~li~~Gv~gl~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv 103 (292)
T 3daq_A 24 ALKAHVNFLLENNAQAIIVNGTTAESPTLTTDEKELILKTVIDLVDKRVPVIAGTGTNDTEKSIQASIQAKALGADAIML 103 (292)
T ss_dssp HHHHHHHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHHcCCCEEEECccccccccCCHHHHHHHHHHHHHHhCCCCcEEEeCCcccHHHHHHHHHHHHHcCCCEEEE
Confidence 44567888999999999987765543 22234555554432 36899986543 345566778899999955
|
| >1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1 | Back alignment and structure |
|---|
Probab=84.88 E-value=1.3 Score=43.95 Aligned_cols=65 Identities=17% Similarity=0.089 Sum_probs=51.1
Q ss_pred HHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEE
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v 398 (590)
.+.+.+..++|+|++.++.- ....+.+.++.++..+|.+|+.+-+..+.++++.+.++|||+|.|
T Consensus 203 leea~eA~~aGaD~I~LDn~--~~e~l~~av~~l~~~~~~v~ieASGGIt~eni~~~a~tGVD~Isv 267 (285)
T 1o4u_A 203 LEDALRAVEAGADIVMLDNL--SPEEVKDISRRIKDINPNVIVEVSGGITEENVSLYDFETVDVISS 267 (285)
T ss_dssp HHHHHHHHHTTCSEEEEESC--CHHHHHHHHHHHHHHCTTSEEEEEECCCTTTGGGGCCTTCCEEEE
T ss_pred HHHHHHHHHcCCCEEEECCC--CHHHHHHHHHHhhccCCCceEEEECCCCHHHHHHHHHcCCCEEEE
Confidence 46667778899999998873 334455666777766667888887777999999999999999976
|
| >3ddm_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9284B, enolase family, PSI-2; 2.60A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=84.83 E-value=8 Score=40.01 Aligned_cols=116 Identities=9% Similarity=0.023 Sum_probs=78.0
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhC-CCceEEec-cc-cCcHHHH----HHHHCCCCEEEEccc
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEY-PDMQVIGG-NV-LFGYQPR----ATLLNFIYQIEMIKF 401 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~-~~vpvi~g-~v-~s~~~a~----~l~~~Gvd~i~v~~~ 401 (590)
+...+.++.+++.|...+-+.... +...-++.++.+++.+ |++++++. |. -+.++|. .|.+.|+++| +
T Consensus 157 e~~~~~a~~~~~~G~~~iKlK~g~-~~~~d~~~v~avR~a~g~~~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~i----E 231 (392)
T 3ddm_A 157 ENPEDVVARKAAEGYRAFKLKVGF-DDARDVRNALHVRELLGAATPLMADANQGWDLPRARQMAQRLGPAQLDWL----E 231 (392)
T ss_dssp SSHHHHHHHHHHHTCCCEEEECSS-CHHHHHHHHHHHHHHHCSSSCEEEECTTCCCHHHHHHHHHHHGGGCCSEE----E
T ss_pred HHHHHHHHHHHHcCCCEEEEecCC-CHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHhCCCEE----E
Confidence 345677788888999988887654 3445578899999887 57788763 22 2666654 4556888888 2
Q ss_pred ccccCCCccccccc-hhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcC-CCEEEEC
Q psy1056 402 IKKEYPDMQVIGRN-GTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALG-ASTAMMG 459 (590)
Q Consensus 402 ~~~~~~~~~~~g~~-~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalG-A~~v~~g 459 (590)
- . +... . ...+..++ +..++||.+++.+.+..|+.+++..| +|.+++-
T Consensus 232 e--P---~~~~--d~~~~~~~l~---~~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~k 281 (392)
T 3ddm_A 232 E--P---LRAD--RPAAEWAELA---QAAPMPLAGGENIAGVAAFETALAARSLRVMQPD 281 (392)
T ss_dssp C--C---SCTT--SCHHHHHHHH---HHCSSCEEECTTCCSHHHHHHHHHHTCEEEECCC
T ss_pred C--C---CCcc--chHHHHHHHH---HhcCCCEEeCCCCCCHHHHHHHHHcCCCCEEEeC
Confidence 1 1 1100 1 23333333 34579999999999999999999887 5666554
|
| >1chr_A Chloromuconate cycloisomerase; 3.00A {Ralstonia eutropha} PDB: 2chr_A | Back alignment and structure |
|---|
Probab=84.80 E-value=11 Score=38.66 Aligned_cols=116 Identities=7% Similarity=-0.065 Sum_probs=76.2
Q ss_pred HHHHHHHH-cCCcEEEEecCCCchhhHHHHHHHHHHhCC-CceEEec-ccc-CcHHH----HHHHHCCCCEEEEcccccc
Q psy1056 333 NRLKLLSQ-AGVDVVILDSSQGNSIYQIEMIKFIKKEYP-DMQVIGG-NVL-FGYQP----RATLLNFIYQIEMIKFIKK 404 (590)
Q Consensus 333 e~~~~li~-~gad~i~V~~~~G~~~~~l~~i~~i~~~~~-~vpvi~g-~v~-s~~~a----~~l~~~Gvd~i~v~~~~~~ 404 (590)
+.+...++ .|...+-+.....+...-++.++.+++.++ ++++++. |.. +.++| +.|.+.|+++| +-
T Consensus 148 ~~~~~~~~~~G~~~~KiKvg~~~~~~d~~~v~avR~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~i----Eq-- 221 (370)
T 1chr_A 148 DSAVEMIERRRHNRFKVKLGFRSPQDDLIHMEALSNSLGSKAYLRVDVNQAWDEQVASVYIPELEALGVELI----EQ-- 221 (370)
T ss_dssp HHHHHHHHTTCCCEEEEECSSSCSHHHHHHHHHHHHHSSTTCCEEEECTTCCCTTHHHHHTHHHHTTTEEEE----EC--
T ss_pred HHHHHHHHHCCCCEEEEecCCCCHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCEE----EC--
Confidence 33444444 799988877655445556888999999986 4788764 222 55555 45666788877 21
Q ss_pred cCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcC-CCEEEECccc
Q psy1056 405 EYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALG-ASTAMMGSLL 462 (590)
Q Consensus 405 ~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalG-A~~v~~g~~l 462 (590)
. +... ....+..++ ...++||.+++-+.+..|+.+++..| +|.+++-...
T Consensus 222 P---~~~~--~~~~~~~l~---~~~~iPia~dE~~~~~~~~~~~~~~~~~d~v~~k~~~ 272 (370)
T 1chr_A 222 P---VGRE--NTQALRRLS---DNNRVAIMADESLSTLASAFDLARDRSVDVFSLKLCN 272 (370)
T ss_dssp C---SCTT--CHHHHHHHH---HHSCSEEEESSSCCSHHHHHHHHTTTSCSEEEECTTT
T ss_pred C---CCcc--cHHHHHHHH---hhCCCCEEeCCCcCCHHHHHHHHHcCCCCEEEECccc
Confidence 1 1100 222233333 34579999999999999999999886 7888776544
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 590 | ||||
| d1jr1a1 | 378 | c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate | 4e-57 | |
| d1jr1a1 | 378 | c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate | 1e-29 | |
| d1zfja1 | 365 | c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate d | 3e-48 | |
| d1zfja1 | 365 | c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate d | 6e-28 | |
| d1eepa_ | 388 | c.1.5.1 (A:) Inosine monophosphate dehydrogenase ( | 4e-42 | |
| d1eepa_ | 388 | c.1.5.1 (A:) Inosine monophosphate dehydrogenase ( | 3e-12 | |
| d1eepa_ | 388 | c.1.5.1 (A:) Inosine monophosphate dehydrogenase ( | 1e-11 | |
| d1vrda1 | 330 | c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate d | 4e-38 | |
| d1vrda1 | 330 | c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate d | 3e-28 | |
| d2cu0a1 | 368 | c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate d | 1e-36 | |
| d2cu0a1 | 368 | c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate d | 1e-16 | |
| d1pvna1 | 362 | c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate d | 5e-28 | |
| d1pvna1 | 362 | c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate d | 6e-16 | |
| d1yxya1 | 230 | c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-p | 2e-13 | |
| d1yxya1 | 230 | c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-p | 2e-04 | |
| d1jr1a4 | 120 | d.37.1.1 (A:113-232) Type II inosine monophosphate | 5e-12 | |
| d1jr1a4 | 120 | d.37.1.1 (A:113-232) Type II inosine monophosphate | 1e-08 | |
| d1y0ea_ | 222 | c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosph | 9e-10 | |
| d1y0ea_ | 222 | c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosph | 2e-05 | |
| d1zfja4 | 126 | d.37.1.1 (A:95-220) Type II inosine monophosphate | 1e-09 | |
| d1zfja4 | 126 | d.37.1.1 (A:95-220) Type II inosine monophosphate | 1e-06 | |
| d2j9la1 | 169 | d.37.1.1 (A:578-746) Chloride channel protein 5, C | 8e-07 | |
| d1p0ka_ | 329 | c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomera | 3e-06 | |
| d1p4ca_ | 353 | c.1.4.1 (A:) Membrane-associated (S)-mandelate deh | 3e-05 | |
| d2d4za3 | 160 | d.37.1.1 (A:527-606,A:691-770) Chloride channel pr | 1e-04 | |
| d1kbia1 | 414 | c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal | 2e-04 | |
| d2v8qe1 | 145 | d.37.1.1 (E:182-326) 5'-AMP-activated protein kina | 2e-04 | |
| d2v8qe1 | 145 | d.37.1.1 (E:182-326) 5'-AMP-activated protein kina | 3e-04 | |
| d1o50a3 | 145 | d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Th | 3e-04 | |
| d1o50a3 | 145 | d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Th | 8e-04 | |
| d1vcfa1 | 310 | c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-i | 3e-04 | |
| d1tb3a1 | 349 | c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus | 0.002 | |
| d2o16a3 | 139 | d.37.1.1 (A:20-158) Hypothetical protein VC0737 {V | 0.002 | |
| d1pkla2 | 258 | c.1.12.1 (A:1-87,A:187-357) Pyruvate kinase, N-ter | 0.002 | |
| d1a3xa2 | 265 | c.1.12.1 (A:1-87,A:189-366) Pyruvate kinase, N-ter | 0.002 | |
| d2ooxe1 | 179 | d.37.1.1 (E:3-181) Uncharacterized protein C1556.0 | 0.003 | |
| d2ouxa2 | 127 | d.37.1.1 (A:136-262) Magnesium transporter MgtE {E | 0.003 |
| >d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 378 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Score = 194 bits (494), Expect = 4e-57
Identities = 186/378 (49%), Positives = 235/378 (62%), Gaps = 46/378 (12%)
Query: 232 VTSRDVD----FLEN--------SANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKS 279
T+ VD + S+ MD ++ EA + + +
Sbjct: 28 FTADQVDLTSALTKKITLKTPLVSSPMD--------------------TVTEAGMAIAMA 67
Query: 280 KKGKLPILNDKGELIALIARTDLK--KSRDYPDSSKDENNQLIVGAAIGTREADKNRLKL 337
G + ++ A K K YP +SKD QL+ GAAIGT E DK RL L
Sbjct: 68 LTGGIGFIH-HNCTPEFQANEVRKVKKYEQYPLASKDAKKQLLCGAAIGTHEDDKYRLDL 126
Query: 338 LSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLN----FI 393
L+ AGVDVV+LDSSQGNSI+QI MIK++K++YP++QVIGGNV+ Q + +
Sbjct: 127 LALAGVDVVVLDSSQGNSIFQINMIKYMKEKYPNLQVIGGNVVTAAQAKNLIDAGVDALR 186
Query: 394 YQIEMIKFIKKEYPDMQVIGRNGTAVYR-VAEYASRRGVPVIADGGVQSVGHVMKALALG 452
+ ++ GR V+EYA R GVPVIADGG+Q+VGH+ KALALG
Sbjct: 187 VGMGCGSICI--TQEVLACGRPQATAVYKVSEYARRFGVPVIADGGIQNVGHIAKALALG 244
Query: 453 ASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDK 512
AST MMGSLLA T+EAPGEYFFSDG+RLKKYRGMGSL+AM + ++ +RYF DK
Sbjct: 245 ASTVMMGSLLAATTEAPGEYFFSDGIRLKKYRGMGSLDAMDKH---LSSQNRYFSEA-DK 300
Query: 513 LKVAQGVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRAMMYSGELKFEKRTLC 572
+KVAQGVSGA+ DKGS+ +F+PYL G++H CQDIGAKSL+ +RAMMYSGELKFEKRT
Sbjct: 301 IKVAQGVSGAVQDKGSIHKFVPYLIAGIQHSCQDIGAKSLTQVRAMMYSGELKFEKRTSS 360
Query: 573 AQNEGSVHGLYSYEKRLF 590
AQ EG VH L+SYEKRLF
Sbjct: 361 AQVEGGVHSLHSYEKRLF 378
|
| >d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 378 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Score = 118 bits (297), Expect = 1e-29
Identities = 98/192 (51%), Positives = 109/192 (56%), Gaps = 53/192 (27%)
Query: 69 VTSRDVDFLENSANMDLKIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGI 128
T+ VD L+S LTKKITL PLVSSPMDTVTE+ MAIAMAL GGI
Sbjct: 28 FTADQVD---------------LTSALTKKITLKTPLVSSPMDTVTEAGMAIAMALTGGI 72
Query: 129 G--------------------------------------AAIGTREADKYRLKLLSQAGV 150
G AAIGT E DKYRL LL+ AGV
Sbjct: 73 GFIHHNCTPEFQANEVRKVKKYEQYPLASKDAKKQLLCGAAIGTHEDDKYRLDLLALAGV 132
Query: 151 DVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGLRVGSHGC 210
DVV+LDSSQGNSI+QI MIKY+K++YP++QVIGGNVVT QAKNLIDAGVD LRVG
Sbjct: 133 DVVVLDSSQGNSIFQINMIKYMKEKYPNLQVIGGNVVTAAQAKNLIDAGVDALRVGMGCG 192
Query: 211 HGFCGFPVTENG 222
V G
Sbjct: 193 SICITQEVLACG 204
|
| >d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]} Length = 365 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Streptococcus pyogenes [TaxId: 1314]
Score = 170 bits (431), Expect = 3e-48
Identities = 79/305 (25%), Positives = 136/305 (44%), Gaps = 21/305 (6%)
Query: 287 LNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVV 346
+ G L + + + + K +L+V AA+G R + L +AG D +
Sbjct: 64 IARAGGLGVIHKNMSITEQAEEVRKVKRSEGRLLVAAAVGVTSDTFERAEALFEAGADAI 123
Query: 347 ILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKE- 405
++D++ G+S + I I+ +P+ +I GN+ + ++++K
Sbjct: 124 VIDTAHGHSAGVLRKIAEIRAHFPNRTLIAGNI---ATAEGARALYDAGVDVVKVGIGPG 180
Query: 406 -----YPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGS 460
V TA+Y A A G +IADGG++ G ++KALA G + M+GS
Sbjct: 181 SICTTRVVAGVGVPQVTAIYDAAAVAREYGKTIIADGGIKYSGDIVKALAAGGNAVMLGS 240
Query: 461 LLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLK--VAQG 518
+ AGT EAPGE G + K YRGMGS+ AM + + DRYF +++ V +G
Sbjct: 241 MFAGTDEAPGETEIYQGRKYKTYRGMGSIAAMKKG-----SSDRYFQGSVNEANKLVPEG 295
Query: 519 VSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRAMMYSGELKFEKRTLCAQNEGS 578
+ G + KG+ + + G++ G +GA + L +F + + E
Sbjct: 296 IEGRVAYKGAASDIVFQMLGGIRSGMGYVGAGDIQELH-----ENAQFVEMSGAGLIESH 350
Query: 579 VHGLY 583
H +
Sbjct: 351 PHDVQ 355
|
| >d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]} Length = 365 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Streptococcus pyogenes [TaxId: 1314]
Score = 113 bits (283), Expect = 6e-28
Identities = 49/160 (30%), Positives = 76/160 (47%), Gaps = 28/160 (17%)
Query: 88 EKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIG------------------ 129
E DL + L +TL P++++ MDTVT S MAIA+A GG+G
Sbjct: 30 EVDLKTKLADNLTLNIPIITAAMDTVTGSKMAIAIARAGGLGVIHKNMSITEQAEEVRKV 89
Query: 130 ----------AAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDM 179
AA+G R + L +AG D +++D++ G+S + I I+ +P+
Sbjct: 90 KRSEGRLLVAAAVGVTSDTFERAEALFEAGADAIVIDTAHGHSAGVLRKIAEIRAHFPNR 149
Query: 180 QVIGGNVVTTDQAKNLIDAGVDGLRVGSHGCHGFCGFPVT 219
+I GN+ T + A+ L DAGVD ++VG V
Sbjct: 150 TLIAGNIATAEGARALYDAGVDVVKVGIGPGSICTTRVVA 189
|
| >d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} Length = 388 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
Score = 154 bits (389), Expect = 4e-42
Identities = 105/365 (28%), Positives = 168/365 (46%), Gaps = 49/365 (13%)
Query: 232 VTSRDVD----FLEN--------SANMDLKIEKVMTNVNEIISAQAG--------ISLEE 271
V +V +N S+ MD V + I A+ G +S+E
Sbjct: 22 VLPSEVSLKTQLTKNISLNIPFLSSAMD----TVTESQMAIAIAKEGGIGIIHKNMSIEA 77
Query: 272 ANVILEKSKKGKLPI---------------LNDKGELIALIARTDLKKSRDYPDSSKDEN 316
+EK K K K L A + + D+P++ KD N
Sbjct: 78 QRKEIEKVKTYKFQKTINTNGDTNEQKPEIFTAKQHLEKSDAYKNAEHKEDFPNACKDLN 137
Query: 317 NQLIVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIG 376
N+L VGAA+ R++ L +A VD++++DS+ G+S IE+IK IK +YP++ +I
Sbjct: 138 NKLRVGAAVSIDIDTIERVEELVKAHVDILVIDSAHGHSTRIIELIKKIKTKYPNLDLIA 197
Query: 377 GNVLFGYQPRATLLN--FIYQIEMIK-FIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPV 433
GN++ + ++ + I V TA+ V E + + +
Sbjct: 198 GNIVTKEAALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEACNNTNICI 257
Query: 434 IADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMS 493
IADGG++ G V+KA+A GA + M+G+L AGT E+P E +G + K Y GMGS+ AM
Sbjct: 258 IADGGIRFSGDVVKAIAAGADSVMIGNLFAGTKESPSEEIIYNGKKFKSYVGMGSISAMK 317
Query: 494 RKDGGAAAMDRYFHNEMDKLK--VAQGVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKS 551
R + RYF E ++ K V +G+ G + G + L L+ GL G +GA +
Sbjct: 318 R-----GSKSRYFQLENNEPKKLVPEGIEGMVPYSGKLKDILTQLKGGLMSGMGYLGAAT 372
Query: 552 LSNLR 556
+S+L+
Sbjct: 373 ISDLK 377
|
| >d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} Length = 388 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
Score = 66.3 bits (161), Expect = 3e-12
Identities = 26/42 (61%), Positives = 30/42 (71%)
Query: 88 EKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIG 129
E L + LTK I+L P +SS MDTVTES MAIA+A GGIG
Sbjct: 26 EVSLKTQLTKNISLNIPFLSSAMDTVTESQMAIAIAKEGGIG 67
|
| >d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} Length = 388 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
Score = 64.8 bits (157), Expect = 1e-11
Identities = 51/211 (24%), Positives = 77/211 (36%), Gaps = 53/211 (25%)
Query: 1 IIHHNCTPEYQANEVLKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGK 60
IIH N + E Q E+ KVK YK
Sbjct: 68 IIHKNMSIEAQRKEIEKVKTYKFQKT---------------------------------- 93
Query: 61 LGEKLLGIVTSRDVDFLENSANMDLKIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAI 120
I T+ D + + K L K +
Sbjct: 94 -------INTNGDTNE-QKPEIFTAK------QHLEKSDAYKNAEHKEDFPNACKDLNN- 138
Query: 121 AMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQ 180
+GAA+ R++ L +A VD++++DS+ G+S IE+IK IK +YP++
Sbjct: 139 ----KLRVGAAVSIDIDTIERVEELVKAHVDILVIDSAHGHSTRIIELIKKIKTKYPNLD 194
Query: 181 VIGGNVVTTDQAKNLIDAGVDGLRVGSHGCH 211
+I GN+VT + A +LI G D L+VG
Sbjct: 195 LIAGNIVTKEAALDLISVGADCLKVGIGPGS 225
|
| >d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]} Length = 330 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Thermotoga maritima [TaxId: 2336]
Score = 141 bits (356), Expect = 4e-38
Identities = 95/266 (35%), Positives = 139/266 (52%), Gaps = 15/266 (5%)
Query: 297 IARTDLKKSRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNSI 356
I +L S + +L+VGAA+GT R++ L +AGVDV+++D++ G+S
Sbjct: 65 IIHKNLTPDEQARQVSIVKKTRLLVGAAVGTSPETMERVEKLVKAGVDVIVIDTAHGHSR 124
Query: 357 YQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKF------IKKEYPDMQ 410
IE ++ IK +YPD+ V+ GNV P T + +K I
Sbjct: 125 RVIETLEMIKADYPDLPVVAGNV---ATPEGTEALIKAGADAVKVGVGPGSICTTRVVAG 181
Query: 411 VIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAPG 470
V TAV +E A + VP+IADGG++ G ++KALA GA + M+GS+ AGT EAPG
Sbjct: 182 VGVPQLTAVMECSEVARKYDVPIIADGGIRYSGDIVKALAAGAESVMVGSIFAGTEEAPG 241
Query: 471 EYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVL 530
E G + K YRGMGSL AM + DRY E + V +G+ G + KG+V
Sbjct: 242 ETILYQGRKYKAYRGMGSLGAMRS-----GSADRYGQ-EGENKFVPEGIEGMVPYKGTVK 295
Query: 531 RFLPYLQCGLKHGCQDIGAKSLSNLR 556
+ L GL+ G IGA+++ L+
Sbjct: 296 DVVHQLVGGLRSGMGYIGARTIKELQ 321
|
| >d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]} Length = 330 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Thermotoga maritima [TaxId: 2336]
Score = 113 bits (284), Expect = 3e-28
Identities = 53/152 (34%), Positives = 82/152 (53%), Gaps = 26/152 (17%)
Query: 88 EKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGI------------------- 128
+ + + LT++I + PLVS+ MDTVTE+ +A A+A GGI
Sbjct: 23 DVKIDTRLTRQIRINIPLVSAAMDTVTEAALAKALAREGGIGIIHKNLTPDEQARQVSIV 82
Query: 129 -------GAAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQV 181
GAA+GT R++ L +AGVDV+++D++ G+S IE ++ IK +YPD+ V
Sbjct: 83 KKTRLLVGAAVGTSPETMERVEKLVKAGVDVIVIDTAHGHSRRVIETLEMIKADYPDLPV 142
Query: 182 IGGNVVTTDQAKNLIDAGVDGLRVGSHGCHGF 213
+ GNV T + + LI AG D ++VG
Sbjct: 143 VAGNVATPEGTEALIKAGADAVKVGVGPGSIC 174
|
| >d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId: 53953]} Length = 368 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Pyrococcus horikoshii [TaxId: 53953]
Score = 138 bits (348), Expect = 1e-36
Identities = 94/357 (26%), Positives = 172/357 (48%), Gaps = 29/357 (8%)
Query: 232 VTSRDVDF-LENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDK 290
V +DVD + N+ L I + ++ + + +++ +++G L +++
Sbjct: 27 VEPKDVDVSTRITPNVKLNIPILSAAMDTVTEWEMAVAM---------AREGGLGVIHRN 77
Query: 291 GELIALIAR-TDLKKSRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVVILD 349
+ + + +K++ Y ++ +DEN +L+V AA+ D R L +AGVDV+++D
Sbjct: 78 MGIEEQVEQVKRVKRAEKYKNAVRDENGELLVAAAVSPF--DIKRAIELDKAGVDVIVVD 135
Query: 350 SSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDM 409
++ +++ I+ +K ++++ ++G P+A +
Sbjct: 136 TAHAHNLKAIKSMKEMRQKVDADFIVGNIA----NPKAVDDLTFADAVKVGIGPGSICTT 191
Query: 410 QVIG----RNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGT 465
+++ TAV VA+ A G+ VIADGG++ G ++KA+A GA M+G+LLAGT
Sbjct: 192 RIVAGVGVPQITAVAMVADRAQEYGLYVIADGGIRYSGDIVKAIAAGADAVMLGNLLAGT 251
Query: 466 SEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVD 525
EAPG+ +G + K+YRGMGSL AM + G A + V +GV G +
Sbjct: 252 KEAPGKEVIINGRKYKQYRGMGSLGAMMK---GGAERYYQGGYMKTRKFVPEGVEGVVPY 308
Query: 526 KGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRAMMYSGELKFEKRTLCAQNEGSVHGL 582
+G+V L L GLK G +GA+++ L+ + +F T E H +
Sbjct: 309 RGTVSEVLYQLVGGLKAGMGYVGARNIRELK-----EKGEFVIITHAGIKESHPHDI 360
|
| >d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId: 53953]} Length = 368 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Pyrococcus horikoshii [TaxId: 53953]
Score = 79.4 bits (195), Expect = 1e-16
Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 39/158 (24%)
Query: 90 DLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIG-------------------- 129
D+S+ +T + L P++S+ MDTVTE +MA+AMA GG+G
Sbjct: 33 DVSTRITPNVKLNIPILSAAMDTVTEWEMAVAMAREGGLGVIHRNMGIEEQVEQVKRVKR 92
Query: 130 ----------------AAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIK 173
A D R L +AGVDV+++D++ +++ I+ +K ++
Sbjct: 93 AEKYKNAVRDENGELLVAAAVSPFDIKRAIELDKAGVDVIVVDTAHAHNLKAIKSMKEMR 152
Query: 174 KEYPDMQVIGGNVVTTDQAKNLIDAGVDGLRVGSHGCH 211
++ ++ GN+ +L D ++VG
Sbjct: 153 QKVDADFIV-GNIANPKAVDDLT--FADAVKVGIGPGS 187
|
| >d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]} Length = 362 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Tritrichomonas foetus [TaxId: 5724]
Score = 113 bits (283), Expect = 5e-28
Identities = 61/261 (23%), Positives = 102/261 (39%), Gaps = 23/261 (8%)
Query: 332 KNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLN 391
+ R+ L +AG DV+ +DSS G S +Q I +I+++Y D +G + + L +
Sbjct: 112 RERVPALVEAGADVLCIDSSDGFSEWQKITIGWIREKYGDKVKVGAGNIVDGEGFRYLAD 171
Query: 392 FIYQIEMIKFIKKE----YPDMQVIGRNGTAVYRVAEYASR------RGVPVIADGGVQS 441
I + TAV V ++ +PV +DGG+
Sbjct: 172 AGADFIKIGIGGGSICITREQKGIGRGQATAVIDVVAERNKYFEETGIYIPVCSDGGIVY 231
Query: 442 VGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAA 501
H+ ALA+GA M+G A E+P +G +K+Y G GS A +
Sbjct: 232 DYHMTLALAMGADFIMLGRYFARFEESPTRKVTINGSVMKEYWGEGSSRARN-------- 283
Query: 502 MDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRAMMYS 561
RY KL +GV + G + + +K + GA ++ L+
Sbjct: 284 WQRYDLGGKQKLSFEEGVDSYVPYAGKLKDNVEASLNKVKSTMCNCGALTIPQLQ----- 338
Query: 562 GELKFEKRTLCAQNEGSVHGL 582
+ K + + EG H +
Sbjct: 339 SKAKITLVSSVSIVEGGAHDV 359
|
| >d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]} Length = 362 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Tritrichomonas foetus [TaxId: 5724]
Score = 77.1 bits (189), Expect = 6e-16
Identities = 49/156 (31%), Positives = 73/156 (46%), Gaps = 33/156 (21%)
Query: 90 DLSSPLTK-------KITLAAPLVSSPMDTVTESDMAIAMALCGGIGA------------ 130
+LS+PL K +I L PLVS+ M +V+ MAIA+A GGI
Sbjct: 31 NLSTPLVKFQKGQQSEINLKIPLVSAIMQSVSGEKMAIALAREGGISFIFGSQSIESQAA 90
Query: 131 -------------AIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYP 177
A + R+ L +AG DV+ +DSS G S +Q I +I+++Y
Sbjct: 91 MVHAVKNFRYLVGAGINTRDFRERVPALVEAGADVLCIDSSDGFSEWQKITIGWIREKYG 150
Query: 178 DM-QVIGGNVVTTDQAKNLIDAGVDGLRVGSHGCHG 212
D +V GN+V + + L DAG D +++G G
Sbjct: 151 DKVKVGAGNIVDGEGFRYLADAGADFIKIGIGGGSI 186
|
| >d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Streptococcus pyogenes [TaxId: 1314]
Score = 68.0 bits (165), Expect = 2e-13
Identities = 29/194 (14%), Positives = 68/194 (35%), Gaps = 24/194 (12%)
Query: 285 PILNDKGELIALIAR---------------TDLKKSRDYPDSSKDENNQLIVGAAIGTRE 329
P+ ++ G ++ L+A+ D+K+ + D +
Sbjct: 26 PLYSETGGIMPLMAKAAQEAGAVGIRANSVRDIKEIQAITDLPIIGIIKKDYPPQEPFIT 85
Query: 330 ADKNRLKLLSQAGVDVVILDSSQG---NSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPR 386
A + L+ + V+ +D ++ + + I+ +K++YP+ ++
Sbjct: 86 ATMTEVDQLAALNIAVIAMDCTKRDRHDGLDIASFIRQVKEKYPNQLLMADI----STFD 141
Query: 387 ATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVM 446
L+ I+ + Y + + E + G+ VIA+G + S
Sbjct: 142 EGLVAHQAGIDFVGTTLSGY--TPYSRQEAGPDVALIEALCKAGIAVIAEGKIHSPEEAK 199
Query: 447 KALALGASTAMMGS 460
K LG + ++G
Sbjct: 200 KINDLGVAGIVVGG 213
|
| >d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Streptococcus pyogenes [TaxId: 1314]
Score = 41.0 bits (95), Expect = 2e-04
Identities = 18/124 (14%), Positives = 43/124 (34%), Gaps = 14/124 (11%)
Query: 127 GIGAAIGTREADKYRLKLLSQAGVDVVILDSSQG---NSIYQIEMIKYIKKEYPDMQVIG 183
A + L+ + V+ +D ++ + + I+ +K++YP+ ++
Sbjct: 76 DYPPQEPFITATMTEVDQLAALNIAVIAMDCTKRDRHDGLDIASFIRQVKEKYPNQ-LLM 134
Query: 184 GNVVTTDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLL----------GIVT 233
++ T D+ AG+D + G + + L E L I +
Sbjct: 135 ADISTFDEGLVAHQAGIDFVGTTLSGYTPYSRQEAGPDVALIEALCKAGIAVIAEGKIHS 194
Query: 234 SRDV 237
+
Sbjct: 195 PEEA 198
|
| >d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 120 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Type II inosine monophosphate dehydrogenase CBS domains species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Score = 60.9 bits (147), Expect = 5e-12
Identities = 54/97 (55%), Positives = 79/97 (81%), Gaps = 1/97 (1%)
Query: 211 HGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLE 270
HGFCG P+T+ G++G +L+GI++SRD+DFL+ D +E++MT +++ A AGI+L+
Sbjct: 25 HGFCGIPITDTGRMGSRLVGIISSRDIDFLKEE-EHDRFLEEIMTKREDLVVAPAGITLK 83
Query: 271 EANVILEKSKKGKLPILNDKGELIALIARTDLKKSRD 307
EAN IL++SKKGKLPI+N+ EL+A+IARTDLKK+RD
Sbjct: 84 EANEILQRSKKGKLPIVNENDELVAIIARTDLKKNRD 120
|
| >d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 120 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Type II inosine monophosphate dehydrogenase CBS domains species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Score = 51.3 bits (122), Expect = 1e-08
Identities = 29/82 (35%), Positives = 45/82 (54%)
Query: 24 GFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANM 83
GFI DPV ++P + V + K +HGFCG P+T+ G++G +L+GI++SRD+DFL+ +
Sbjct: 1 GFITDPVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKEEEHD 60
Query: 84 DLKIEKDLSSPLTKKITLAAPL 105
E L
Sbjct: 61 RFLEEIMTKREDLVVAPAGITL 82
|
| >d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Staphylococcus aureus [TaxId: 1280]
Score = 56.8 bits (136), Expect = 9e-10
Identities = 20/176 (11%), Positives = 55/176 (31%), Gaps = 27/176 (15%)
Query: 301 DLKKSRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQ-- 358
D+ ++ D + + A + L ++ +V+ LD++ +
Sbjct: 47 DILAIKETVDLPVIGIVKRDYDHSDVFITATSKEVDELIESQCEVIALDATLQQRPKETL 106
Query: 359 IEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGT- 417
E++ +I+ P+++++ E + + + T
Sbjct: 107 DELVSYIRTHAPNVEIMADI--------------ATVEEAKNAARLGFDYIGTTLHGYTS 152
Query: 418 ----------AVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463
+ + VIA+G V + + + LG +++G +
Sbjct: 153 YTQGQLLYQNDFQFLKDVLQSVDAKVIAEGNVITPDMYKRVMDLGVHCSVVGGAIT 208
|
| >d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Staphylococcus aureus [TaxId: 1280]
Score = 43.7 bits (102), Expect = 2e-05
Identities = 24/147 (16%), Positives = 49/147 (33%), Gaps = 31/147 (21%)
Query: 104 PLVSSPMDTV-TESDMAIAMALCGGIGAAIGTRE-------------------------- 136
L P+ + S MA+A G +G T+E
Sbjct: 13 ALPDEPLHSSFIMSKMALAAYEGGAVGIRANTKEDILAIKETVDLPVIGIVKRDYDHSDV 72
Query: 137 ---ADKYRLKLLSQAGVDVVILDSSQGNSIYQ-IEMIKYIKKEYPDMQVIGGNVVTTDQA 192
A + L ++ +V+ LD++ + ++ + + + I ++ T ++A
Sbjct: 73 FITATSKEVDELIESQCEVIALDATLQQRPKETLDELVSYIRTHAPNVEIMADIATVEEA 132
Query: 193 KNLIDAGVDGLRVGSHGCHGFCGFPVT 219
KN G D + HG + +
Sbjct: 133 KNAARLGFDYIGTTLHGYTSYTQGQLL 159
|
| >d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]} Length = 126 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Type II inosine monophosphate dehydrogenase CBS domains species: Streptococcus pyogenes [TaxId: 1314]
Score = 54.1 bits (129), Expect = 1e-09
Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 5/105 (4%)
Query: 211 HGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLE 270
+ G P+ E KL+GI+T+RD+ F + +++A G LE
Sbjct: 26 YRISGVPIVETLANR-KLVGIITNRDMRF----ISDYNAPISEHMTSEHLVTAAVGTDLE 80
Query: 271 EANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDE 315
A IL + + KLP++++ G L LI D++K ++P ++KDE
Sbjct: 81 TAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIEFPHAAKDE 125
|
| >d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]} Length = 126 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Type II inosine monophosphate dehydrogenase CBS domains species: Streptococcus pyogenes [TaxId: 1314]
Score = 45.3 bits (106), Expect = 1e-06
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 24 GFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74
G I DP + P + + ++ +++ G P+ E KL+GI+T+RD+
Sbjct: 2 GVIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANR-KLVGIITNRDM 51
|
| >d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Chloride channel protein 5, ClC-5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.2 bits (111), Expect = 8e-07
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV-DFLENSANMD 84
P + T + V+ + ++ G VT NG +LLGI+T +DV + AN D
Sbjct: 108 LSPFTVTDLTPMEIVVDIFRKLGLRQCLVTHNG----RLLGIITKKDVLKHIAQMANQD 162
|
| >d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]} Length = 329 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Bacillus subtilis [TaxId: 1423]
Score = 47.1 bits (111), Expect = 3e-06
Identities = 36/234 (15%), Positives = 67/234 (28%), Gaps = 55/234 (23%)
Query: 306 RDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQ------- 358
R + + EN ++ A +G+ + + G + + + + I
Sbjct: 84 RLSYEIVRKENPNGLIFANLGSEATAAQAKEAVEMIGANALQIHLNVIQEIVMPEGDRSF 143
Query: 359 ---IEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVI--- 412
++ I+ I VI V FG + + I
Sbjct: 144 SGALKRIEQICSRVSVP-VIVKEVGFGMSK-----------ASAGKLYEAGAAAVDIGGY 191
Query: 413 -GRNGTAVYRV---------------------AEYASRRGVPVIADGGVQSVGHVMKALA 450
G N + + + + +IA GG+Q V KA+A
Sbjct: 192 GGTNFSKIENLRRQRQISFFNSWGISTAASLAEIRSEFPASTMIASGGLQDALDVAKAIA 251
Query: 451 LGASTAMMGS-----LLAGTSEAPGEYF--FSDGVRL-KKYRGMGSLEAMSRKD 496
LGAS M L E E + ++L G ++ + +
Sbjct: 252 LGASCTGMAGHFLKALTDSGEEGLLEEIQLILEELKLIMTVLGARTIADLQKAP 305
|
| >d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Membrane-associated (S)-mandelate dehydrogenase species: Pseudomonas putida [TaxId: 303]
Score = 44.2 bits (103), Expect = 3e-05
Identities = 21/110 (19%), Positives = 45/110 (40%), Gaps = 7/110 (6%)
Query: 350 SSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDM 409
S Q ++ + E +++++ +P ++ G + + I +
Sbjct: 202 SRQMDASFNWEALRWLRDLWPHKLLVKGLLSAEDA------DRCIAEGADGVILSNHGGR 255
Query: 410 QVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMG 459
Q+ A+ ++ G PV+ D G + ++KALALGA ++G
Sbjct: 256 QLDCAISPMEVL-AQSVAKTGKPVLIDSGFRRGSDIVKALALGAEAVLLG 304
|
| >d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Chloride channel protein, CBS tandem species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]
Score = 40.4 bits (93), Expect = 1e-04
Identities = 14/72 (19%), Positives = 24/72 (33%), Gaps = 4/72 (5%)
Query: 3 HHNCTPEYQANEVLKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLG 62
Q + + V + P + T+L K + G VT G
Sbjct: 87 LEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTSMG--- 143
Query: 63 EKLLGIVTSRDV 74
KL+G+V ++
Sbjct: 144 -KLVGVVALAEI 154
|
| >d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 414 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Flavocytochrome b2, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.8 bits (97), Expect = 2e-04
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 431 VPVIADGGVQSVGHVMKALALGASTAMMG 459
+ V DGGV+ V+KAL LGA +G
Sbjct: 307 LEVFVDGGVRRGTDVLKALCLGAKGVGLG 335
|
| >d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 39.8 bits (92), Expect = 2e-04
Identities = 10/72 (13%), Positives = 22/72 (30%), Gaps = 3/72 (4%)
Query: 3 HHNCTPEYQANEVLKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLG 62
T V K +++ + + TL ++ + V +
Sbjct: 68 AAEKTYNNLDVSVTKALQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHD-- 125
Query: 63 EKLLGIVTSRDV 74
+ GIV+ D+
Sbjct: 126 -VVKGIVSLSDI 136
|
| >d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 39.1 bits (90), Expect = 3e-04
Identities = 16/123 (13%), Positives = 38/123 (30%), Gaps = 6/123 (4%)
Query: 17 KVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDF 76
+++ + G + + +T + L + QH PV + +++ I + DV
Sbjct: 10 SLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKG---RVVDIYSKFDVIN 66
Query: 77 LENSANMDLKIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTRE 136
L + + + L +T+ I + + + E
Sbjct: 67 LAAEKTYNNLDVSVTKALQHRSHYFEGVLKCYLHETLEA---IINRLVEAEVHRLVVVDE 123
Query: 137 ADK 139
D
Sbjct: 124 HDV 126
|
| >d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]} Length = 145 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein TM0935 species: Thermotoga maritima [TaxId: 2336]
Score = 39.2 bits (90), Expect = 3e-04
Identities = 15/132 (11%), Positives = 44/132 (33%), Gaps = 11/132 (8%)
Query: 179 MQVIGGNVVTTDQAKNLIDA-------GVDGLRVGSHGCHGFCGFPVTEN-GKLGEKLLG 230
++I ++ + + V + PV G G
Sbjct: 7 CKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHFFG 66
Query: 231 IVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDK 290
+ ++ + ++M + + LEEA ++ + ++P++++K
Sbjct: 67 FIPKEELIRSSMKRLIAKNASEIMLDP---VYVHMDTPLEEALKLMIDNNIQEMPVVDEK 123
Query: 291 GELIALIARTDL 302
GE++ + ++
Sbjct: 124 GEIVGDLNSLEI 135
|
| >d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]} Length = 145 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein TM0935 species: Thermotoga maritima [TaxId: 2336]
Score = 38.0 bits (87), Expect = 8e-04
Identities = 5/44 (11%), Positives = 12/44 (27%)
Query: 16 LKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENG 59
+KVK P + T + +++ +
Sbjct: 1 MKVKDVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARD 44
|
| >d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]} Length = 310 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Thermus thermophilus [TaxId: 274]
Score = 40.6 bits (94), Expect = 3e-04
Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 7/75 (9%)
Query: 428 RRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAPGE------YFFSDGVRLK 481
+P++A GGV + KALALGA + L + E + + +R
Sbjct: 232 LPHLPLVASGGVYTGTDGAKALALGADLLAVARPLLRPALEGAERVAAWIGDYLEELRTA 291
Query: 482 -KYRGMGSLEAMSRK 495
G + + +
Sbjct: 292 LFAIGARNPKEARGR 306
|
| >d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 349 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Hydroxyacid oxidase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 38.7 bits (89), Expect = 0.002
Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 5/100 (5%)
Query: 360 EMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAV 419
+ ++ ++ G + A + ++ I + + + A+
Sbjct: 207 NDLSLLQSITRLPIILKGILTKEDAELA----MKHNVQGIVVSNHGGRQLDEVSASIDAL 262
Query: 420 YRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMG 459
V + + V DGGV++ V+KALALGA +G
Sbjct: 263 REVVAAVKGK-IEVYMDGGVRTGTDVLKALALGARCIFLG 301
|
| >d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]} Length = 139 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein VC0737 species: Vibrio cholerae [TaxId: 666]
Score = 36.8 bits (84), Expect = 0.002
Identities = 13/74 (17%), Positives = 22/74 (29%), Gaps = 4/74 (5%)
Query: 1 IIHHNCTPEYQANEVLKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGK 60
+ Q + + D +AP L + ++H PV
Sbjct: 57 AQESSLQRSAQGDSLAFETPLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAKD- 115
Query: 61 LGEKLLGIVTSRDV 74
L+GI+T D
Sbjct: 116 ---VLVGIITDSDF 126
|
| >d1pkla2 c.1.12.1 (A:1-87,A:187-357) Pyruvate kinase, N-terminal domain {Leishmania mexicana [TaxId: 5665]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Pyruvate kinase domain: Pyruvate kinase, N-terminal domain species: Leishmania mexicana [TaxId: 5665]
Score = 37.7 bits (87), Expect = 0.002
Identities = 22/117 (18%), Positives = 44/117 (37%), Gaps = 6/117 (5%)
Query: 320 IVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNV 379
I+ IG LK L Q+G+ V ++ S G+ Y I +++ ++ G N+
Sbjct: 23 II-CTIGPSTQSVEALKGLIQSGMSVARMNFSHGSHEYHQTTINNVRQAAAEL---GVNI 78
Query: 380 LFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIG--RNGTAVYRVAEYASRRGVPVI 434
+ ++F ++ DM R+ V V + +G ++
Sbjct: 79 AIALDTKGPPAVSAKDRVDLQFGVEQGVDMIFASFIRSAEQVGDVRKALGPKGRDIM 135
|
| >d1a3xa2 c.1.12.1 (A:1-87,A:189-366) Pyruvate kinase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 265 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Pyruvate kinase domain: Pyruvate kinase, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.7 bits (87), Expect = 0.002
Identities = 26/152 (17%), Positives = 54/152 (35%), Gaps = 7/152 (4%)
Query: 128 IGAAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVV 187
I IG + + L L +AG+++V ++ S G+ Y +I +K +
Sbjct: 23 IIGTIGPKTNNPETLVALRKAGLNIVRMNFSHGSYEYHKSVIDNARKSEELYPGRPLAIA 82
Query: 188 TTDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMD 247
+ L + + LR G + ++ + D +
Sbjct: 83 LDTKGPALSEKDKEDLRFGVKNGVHMVFASFIRTANDVLTIREVLGEQGKD-----VKII 137
Query: 248 LKIEKVMT--NVNEIISAQAGISLEEANVILE 277
+KIE N +EI+ G+ + ++ +E
Sbjct: 138 VKIENQQGVNNFDEILKVTDGVMVARGDLGIE 169
|
| >d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein C1556.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Score = 36.9 bits (84), Expect = 0.003
Identities = 6/74 (8%), Positives = 25/74 (33%), Gaps = 2/74 (2%)
Query: 3 HHNCTPEYQANEVLKVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTEN--GK 60
+++ + +V++ + + + P +L + P+ +
Sbjct: 91 AIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGET 150
Query: 61 LGEKLLGIVTSRDV 74
E ++ ++T +
Sbjct: 151 GSEMIVSVLTQYRI 164
|
| >d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]} Length = 127 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Magnesium transporter MgtE species: Enterococcus faecalis [TaxId: 1351]
Score = 35.9 bits (82), Expect = 0.003
Identities = 17/118 (14%), Positives = 42/118 (35%), Gaps = 10/118 (8%)
Query: 185 NVVTTDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSA 244
V+ + + A + L+ + V + L+G+++ RD+
Sbjct: 10 EFVSIVANQTVRSA-MYVLKNQADMAETIYYVYVVDQEN---HLVGVISLRDLIV----N 61
Query: 245 NMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDL 302
+ D I ++ +IS G E+ + +P+ + L+ ++ D+
Sbjct: 62 DDDTLIADILNE--RVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDI 117
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 590 | |||
| d1jr1a1 | 378 | Inosine monophosphate dehydrogenase (IMPDH) {Chine | 100.0 | |
| d1eepa_ | 388 | Inosine monophosphate dehydrogenase (IMPDH) {Lyme | 100.0 | |
| d1zfja1 | 365 | Inosine monophosphate dehydrogenase (IMPDH) {Strep | 100.0 | |
| d1pvna1 | 362 | Inosine monophosphate dehydrogenase (IMPDH) {Tritr | 100.0 | |
| d2cu0a1 | 368 | Inosine monophosphate dehydrogenase (IMPDH) {Pyroc | 100.0 | |
| d1vrda1 | 330 | Inosine monophosphate dehydrogenase (IMPDH) {Therm | 100.0 | |
| d1p0ka_ | 329 | Isopentenyl-diphosphate delta-isomerase {Bacillus | 99.83 | |
| d1tb3a1 | 349 | Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxI | 99.82 | |
| d1goxa_ | 359 | Glycolate oxidase {Spinach (Spinacia oleracea) [Ta | 99.77 | |
| d1kbia1 | 414 | Flavocytochrome b2, C-terminal domain {Baker's yea | 99.74 | |
| d1vcfa1 | 310 | Isopentenyl-diphosphate delta-isomerase {Thermus t | 99.74 | |
| d1p4ca_ | 353 | Membrane-associated (S)-mandelate dehydrogenase {P | 99.73 | |
| d1zfja4 | 126 | Type II inosine monophosphate dehydrogenase CBS do | 99.66 | |
| d1y5ha3 | 123 | Hypothetical protein Rv2626c {Mycobacterium tuberc | 99.66 | |
| d1jr1a4 | 120 | Type II inosine monophosphate dehydrogenase CBS do | 99.66 | |
| d1pvma4 | 142 | Hypothetical protein Ta0289 {Archaeon Thermoplasma | 99.66 | |
| d2yzqa1 | 156 | Uncharacterized protein PH1780 {Pyrococcus horikos | 99.63 | |
| d2yzqa2 | 122 | Uncharacterized protein PH1780 {Pyrococcus horikos | 99.63 | |
| d2ef7a1 | 127 | Uncharacterized protein ST2348 {Sulfolobus tokodai | 99.62 | |
| d1pbja3 | 120 | Hypothetical protein MTH1622 {Archaeon Methanobact | 99.61 | |
| d2ouxa2 | 127 | Magnesium transporter MgtE {Enterococcus faecalis | 99.61 | |
| d2yzia1 | 132 | Uncharacterized protein PH0107 {Pyrococcus horikos | 99.61 | |
| d2o16a3 | 139 | Hypothetical protein VC0737 {Vibrio cholerae [TaxI | 99.61 | |
| d2yvxa2 | 144 | Magnesium transporter MgtE {Thermus thermophilus [ | 99.6 | |
| d1vr9a3 | 121 | Hypothetical protein TM0892, CBS tandem {Thermotog | 99.6 | |
| d2rc3a1 | 127 | Uncharacterized protein NE2398 {Nitrosomonas europ | 99.6 | |
| d3ddja1 | 141 | Uncharacterized protein SSO3205 {Sulfolobus solfat | 99.58 | |
| d1yava3 | 132 | Hypothetical protein YkuL {Bacillus subtilis [TaxI | 99.55 | |
| d3ddja2 | 135 | Uncharacterized protein SSO3205 {Sulfolobus solfat | 99.53 | |
| d1jr1a4 | 120 | Type II inosine monophosphate dehydrogenase CBS do | 99.53 | |
| d2riha1 | 131 | Uncharacterized protein PAE2072 {Pyrobaculum aerop | 99.52 | |
| d2yzqa1 | 156 | Uncharacterized protein PH1780 {Pyrococcus horikos | 99.52 | |
| d1zfja4 | 126 | Type II inosine monophosphate dehydrogenase CBS do | 99.52 | |
| d1o50a3 | 145 | Hypothetical protein TM0935 {Thermotoga maritima [ | 99.5 | |
| d2ooxe2 | 153 | Uncharacterized protein C1556.08c {Schizosaccharom | 99.48 | |
| d2nyca1 | 140 | Nuclear protein SNF4 {Baker's yeast (Saccharomyces | 99.47 | |
| d2v8qe1 | 145 | 5'-AMP-activated protein kinase subunit gamma-1, A | 99.46 | |
| d2yzqa2 | 122 | Uncharacterized protein PH1780 {Pyrococcus horikos | 99.43 | |
| d2d4za3 | 160 | Chloride channel protein, CBS tandem {Marbled elec | 99.43 | |
| d1o50a3 | 145 | Hypothetical protein TM0935 {Thermotoga maritima [ | 99.42 | |
| d2o16a3 | 139 | Hypothetical protein VC0737 {Vibrio cholerae [TaxI | 99.41 | |
| d1y5ha3 | 123 | Hypothetical protein Rv2626c {Mycobacterium tuberc | 99.41 | |
| d1vr9a3 | 121 | Hypothetical protein TM0892, CBS tandem {Thermotog | 99.37 | |
| d2v8qe2 | 159 | 5'-AMP-activated protein kinase subunit gamma-1, A | 99.36 | |
| d2yzia1 | 132 | Uncharacterized protein PH0107 {Pyrococcus horikos | 99.36 | |
| d3ddja2 | 135 | Uncharacterized protein SSO3205 {Sulfolobus solfat | 99.36 | |
| d1pvma4 | 142 | Hypothetical protein Ta0289 {Archaeon Thermoplasma | 99.36 | |
| d2ouxa2 | 127 | Magnesium transporter MgtE {Enterococcus faecalis | 99.36 | |
| d2rc3a1 | 127 | Uncharacterized protein NE2398 {Nitrosomonas europ | 99.36 | |
| d2ef7a1 | 127 | Uncharacterized protein ST2348 {Sulfolobus tokodai | 99.35 | |
| d2yvxa2 | 144 | Magnesium transporter MgtE {Thermus thermophilus [ | 99.35 | |
| d3ddja1 | 141 | Uncharacterized protein SSO3205 {Sulfolobus solfat | 99.32 | |
| d1pbja3 | 120 | Hypothetical protein MTH1622 {Archaeon Methanobact | 99.31 | |
| d2d4za3 | 160 | Chloride channel protein, CBS tandem {Marbled elec | 99.31 | |
| d2j9la1 | 169 | Chloride channel protein 5, ClC-5 {Human (Homo sap | 99.3 | |
| d2v8qe1 | 145 | 5'-AMP-activated protein kinase subunit gamma-1, A | 99.29 | |
| d2riha1 | 131 | Uncharacterized protein PAE2072 {Pyrobaculum aerop | 99.27 | |
| d2ooxe1 | 179 | Uncharacterized protein C1556.08c {Schizosaccharom | 99.27 | |
| d2nyca1 | 140 | Nuclear protein SNF4 {Baker's yeast (Saccharomyces | 99.26 | |
| d1yxya1 | 230 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 99.25 | |
| d1yava3 | 132 | Hypothetical protein YkuL {Bacillus subtilis [TaxI | 99.22 | |
| d1y0ea_ | 222 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 99.18 | |
| d2ooxe2 | 153 | Uncharacterized protein C1556.08c {Schizosaccharom | 99.17 | |
| d2ooxe1 | 179 | Uncharacterized protein C1556.08c {Schizosaccharom | 99.07 | |
| d2v8qe2 | 159 | 5'-AMP-activated protein kinase subunit gamma-1, A | 99.02 | |
| d1juba_ | 311 | Dihydroorotate dehydrogenase {Lactococcus lactis, | 98.93 | |
| d2j9la1 | 169 | Chloride channel protein 5, ClC-5 {Human (Homo sap | 98.93 | |
| d1gtea2 | 312 | Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su | 98.9 | |
| d1vhca_ | 212 | Hypothetical protein HI0047 {Haemophilus influenza | 98.87 | |
| d1wbha1 | 213 | KDPG aldolase {Escherichia coli [TaxId: 562]} | 98.87 | |
| d1ep3a_ | 311 | Dihydroorotate dehydrogenase {Lactococcus lactis, | 98.87 | |
| d1ea0a2 | 771 | Alpha subunit of glutamate synthase, central and F | 98.86 | |
| d1ofda2 | 809 | Alpha subunit of glutamate synthase, central and F | 98.85 | |
| d1mxsa_ | 216 | KDPG aldolase {Pseudomonas putida [TaxId: 303]} | 98.84 | |
| d1wa3a1 | 202 | KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | 98.6 | |
| d1eepa_ | 388 | Inosine monophosphate dehydrogenase (IMPDH) {Lyme | 98.56 | |
| d1d3ga_ | 367 | Dihydroorotate dehydrogenase {Human (Homo sapiens) | 98.25 | |
| d1tv5a1 | 409 | Dihydroorotate dehydrogenase {Plasmodium falciparu | 98.21 | |
| d2b4ga1 | 312 | Dihydroorotate dehydrogenase {Trypanosoma brucei [ | 98.18 | |
| d1xm3a_ | 251 | Thiazole biosynthesis protein ThiG {Bacillus subti | 98.16 | |
| d1qopa_ | 267 | Trp synthase alpha-subunit {Salmonella typhimurium | 98.14 | |
| d1thfd_ | 253 | Cyclase subunit (or domain) of imidazoleglycerolph | 98.05 | |
| d1vc4a_ | 254 | Indole-3-glycerophosphate synthase, IPGS {Thermus | 98.03 | |
| d1a53a_ | 247 | Indole-3-glycerophosphate synthase, IPGS {Archaeon | 98.02 | |
| d1z41a1 | 337 | NADPH dehydrogenase NamA {Bacillus subtilis [TaxId | 98.01 | |
| d1ka9f_ | 251 | Cyclase subunit (or domain) of imidazoleglycerolph | 98.0 | |
| d1wv2a_ | 243 | Thiazole biosynthesis protein ThiG {Pseudomonas ae | 97.97 | |
| d1ps9a1 | 330 | 2,4-dienoyl-CoA reductase, N-terminal domain {Esch | 97.88 | |
| d1h5ya_ | 252 | Cyclase subunit (or domain) of imidazoleglycerolph | 97.87 | |
| d1djqa1 | 340 | Trimethylamine dehydrogenase, N-terminal domain {M | 97.87 | |
| d1f76a_ | 336 | Dihydroorotate dehydrogenase {Escherichia coli [Ta | 97.79 | |
| d1znna1 | 254 | Pyridoxal biosynthesis lyase PdxS {Bacillus stearo | 97.79 | |
| d1vzwa1 | 239 | Phosphoribosylformimino-5-aminoimidazole carboxami | 97.73 | |
| d1vhna_ | 305 | Putative flavin oxidoreducatase TM0096 {Thermotoga | 97.73 | |
| d1rd5a_ | 261 | Trp synthase alpha-subunit {Maize (Zea mays) [TaxI | 97.68 | |
| d1piia2 | 254 | Indole-3-glycerophosphate synthase, IPGS {Escheric | 97.64 | |
| d1i4na_ | 251 | Indole-3-glycerophosphate synthase, IPGS {Thermoto | 97.54 | |
| d1xi3a_ | 206 | Thiamin phosphate synthase {Archaeon (Pyrococcus f | 97.53 | |
| d1jvna1 | 323 | Cyclase subunit (or domain) of imidazoleglycerolph | 97.53 | |
| d1wa3a1 | 202 | KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | 97.48 | |
| d2cu0a1 | 368 | Inosine monophosphate dehydrogenase (IMPDH) {Pyroc | 97.45 | |
| d1jr1a1 | 378 | Inosine monophosphate dehydrogenase (IMPDH) {Chine | 97.39 | |
| d1w0ma_ | 226 | Triosephosphate isomerase {Thermoproteus tenax [Ta | 97.37 | |
| d1mzha_ | 225 | Deoxyribose-phosphate aldolase DeoC {Aquifex aeoli | 97.34 | |
| d1hg3a_ | 224 | Triosephosphate isomerase {Archaeon Pyrococcus woe | 97.26 | |
| d1qo2a_ | 241 | Phosphoribosylformimino-5-aminoimidazole carboxami | 97.25 | |
| d1zfja1 | 365 | Inosine monophosphate dehydrogenase (IMPDH) {Strep | 97.19 | |
| d1vyra_ | 363 | Pentaerythritol tetranirate reductase {Enterobacte | 97.1 | |
| d1ub3a_ | 211 | Deoxyribose-phosphate aldolase DeoC {Thermus therm | 97.09 | |
| d1ujpa_ | 271 | Trp synthase alpha-subunit {Thermus thermophilus [ | 97.09 | |
| d1q6oa_ | 213 | 3-keto-L-gulonate 6-phosphate decarboxylase {Esche | 97.04 | |
| d2flia1 | 217 | D-ribulose-5-phosphate 3-epimerase {Streptococcus | 96.99 | |
| d1geqa_ | 248 | Trp synthase alpha-subunit {Archaeon Pyrococcus fu | 96.99 | |
| d1o0ya_ | 251 | Deoxyribose-phosphate aldolase DeoC {Thermotoga ma | 96.95 | |
| d1n7ka_ | 234 | Deoxyribose-phosphate aldolase DeoC {Archaeon Aero | 96.9 | |
| d1wbha1 | 213 | KDPG aldolase {Escherichia coli [TaxId: 562]} | 96.84 | |
| d2tpsa_ | 226 | Thiamin phosphate synthase {Bacillus subtilis [Tax | 96.81 | |
| d1vrda1 | 330 | Inosine monophosphate dehydrogenase (IMPDH) {Therm | 96.76 | |
| d1vhca_ | 212 | Hypothetical protein HI0047 {Haemophilus influenza | 96.67 | |
| d1gwja_ | 374 | Morphinone reductase {Pseudomonas putida [TaxId: 3 | 96.5 | |
| d1rpxa_ | 230 | D-ribulose-5-phosphate 3-epimerase {Potato (Solanu | 96.42 | |
| d1a53a_ | 247 | Indole-3-glycerophosphate synthase, IPGS {Archaeon | 96.35 | |
| d1mxsa_ | 216 | KDPG aldolase {Pseudomonas putida [TaxId: 303]} | 96.35 | |
| d1h1ya_ | 220 | D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sa | 96.25 | |
| d1pvna1 | 362 | Inosine monophosphate dehydrogenase (IMPDH) {Tritr | 96.16 | |
| d1q45a_ | 380 | 12-oxophytodienoate reductase (OPR, OYE homolog) { | 95.92 | |
| d1icpa_ | 364 | 12-oxophytodienoate reductase (OPR, OYE homolog) { | 95.86 | |
| d1p1xa_ | 250 | Deoxyribose-phosphate aldolase DeoC {Escherichia c | 95.82 | |
| d1qapa1 | 167 | Quinolinic acid phosphoribosyltransferase (Nicotin | 95.77 | |
| d2g50a2 | 282 | Pyruvate kinase, N-terminal domain {Rabbit (Orycto | 95.55 | |
| d1tqxa_ | 221 | D-ribulose-5-phosphate 3-epimerase {Plasmodium fal | 95.45 | |
| d1tqja_ | 221 | D-ribulose-5-phosphate 3-epimerase {Synechocystis | 95.42 | |
| d1viza_ | 229 | PcrB protein homolog YerE {Bacillus subtilis [TaxI | 95.41 | |
| d1vpxa_ | 218 | Decameric fructose-6-phosphate aldolase/transaldol | 95.35 | |
| d1pkla2 | 258 | Pyruvate kinase, N-terminal domain {Leishmania mex | 95.29 | |
| d1e0ta2 | 246 | Pyruvate kinase, N-terminal domain {Escherichia co | 95.24 | |
| d1qpoa1 | 169 | Quinolinic acid phosphoribosyltransferase (Nicotin | 95.22 | |
| d1a3xa2 | 265 | Pyruvate kinase, N-terminal domain {Baker's yeast | 95.19 | |
| d1oyaa_ | 399 | Old yellow enzyme (OYE) {Lager yeast (Saccharomyce | 94.8 | |
| d1wx0a1 | 211 | Decameric fructose-6-phosphate aldolase/transaldol | 94.61 | |
| d1l6wa_ | 220 | Decameric fructose-6-phosphate aldolase/transaldol | 94.48 | |
| d1vzwa1 | 239 | Phosphoribosylformimino-5-aminoimidazole carboxami | 94.45 | |
| d1o4ua1 | 170 | Quinolinic acid phosphoribosyltransferase (Nicotin | 94.36 | |
| d1thfd_ | 253 | Cyclase subunit (or domain) of imidazoleglycerolph | 94.25 | |
| d7reqa2 | 168 | Methylmalonyl-CoA mutase alpha subunit, C-terminal | 94.18 | |
| d1ub3a_ | 211 | Deoxyribose-phosphate aldolase DeoC {Thermus therm | 94.02 | |
| d1h5ya_ | 252 | Cyclase subunit (or domain) of imidazoleglycerolph | 93.74 | |
| d1ka9f_ | 251 | Cyclase subunit (or domain) of imidazoleglycerolph | 93.7 | |
| d1jvna1 | 323 | Cyclase subunit (or domain) of imidazoleglycerolph | 93.32 | |
| d1mzha_ | 225 | Deoxyribose-phosphate aldolase DeoC {Aquifex aeoli | 93.3 | |
| d2a4aa1 | 256 | Fructose-1,6-bisphosphate aldolase {Plasmodium yoe | 92.56 | |
| d1gtea2 | 312 | Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su | 92.49 | |
| d2basa1 | 261 | Hypothetical protein YkuI, N-terminal domain {Baci | 92.2 | |
| d2tpsa_ | 226 | Thiamin phosphate synthase {Bacillus subtilis [Tax | 92.2 | |
| d1xm3a_ | 251 | Thiazole biosynthesis protein ThiG {Bacillus subti | 92.06 | |
| d1o0ya_ | 251 | Deoxyribose-phosphate aldolase DeoC {Thermotoga ma | 91.92 | |
| d1vcva1 | 226 | Deoxyribose-phosphate aldolase DeoC {Archaeon Pyro | 91.56 | |
| d1qo2a_ | 241 | Phosphoribosylformimino-5-aminoimidazole carboxami | 91.53 | |
| d2f6ua1 | 231 | (S)-3-O-geranylgeranylglyceryl phosphate synthase | 91.26 | |
| d1ojxa_ | 251 | Archaeal fructose 1,6-bisphosphate aldolase {Archa | 90.57 | |
| d1eixa_ | 231 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 90.34 | |
| d1s2wa_ | 275 | Phosphoenolpyruvate mutase {Blue mussel (Mytilus e | 90.13 | |
| d1ccwa_ | 137 | Glutamate mutase, small subunit {Clostridium cochl | 90.11 | |
| d1y0ea_ | 222 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 90.02 | |
| d1tv5a1 | 409 | Dihydroorotate dehydrogenase {Plasmodium falciparu | 89.66 | |
| d1dxea_ | 253 | 2-dehydro-3-deoxy-galactarate aldolase {Escherichi | 89.53 | |
| d1tqxa_ | 221 | D-ribulose-5-phosphate 3-epimerase {Plasmodium fal | 89.02 | |
| d1to3a_ | 291 | Putative aldolase YihT {Salmonella typhimurium [Ta | 88.88 | |
| d1vr6a1 | 338 | 3-deoxy-D-arabino-heptulosonate-7-phosphate syntha | 88.3 | |
| d1gqna_ | 252 | Type I 3-dehydroquinate dehydratase {Salmonella ty | 88.16 | |
| d1yxya1 | 230 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 87.8 | |
| d2czda1 | 206 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 87.74 | |
| d7reqb2 | 163 | Methylmalonyl-CoA mutase beta subunit, C-terminal | 87.37 | |
| d1h1ya_ | 220 | D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sa | 87.37 | |
| d1tzza1 | 247 | Hypothetical protein Bll6730 {Bradyrhizobium japon | 86.55 | |
| d1d3ga_ | 367 | Dihydroorotate dehydrogenase {Human (Homo sapiens) | 86.5 | |
| d1dxea_ | 253 | 2-dehydro-3-deoxy-galactarate aldolase {Escherichi | 85.12 | |
| d1wv2a_ | 243 | Thiazole biosynthesis protein ThiG {Pseudomonas ae | 85.05 | |
| d1o4ua1 | 170 | Quinolinic acid phosphoribosyltransferase (Nicotin | 84.99 | |
| d1vlia2 | 295 | Spore coat polysaccharide biosynthesis protein Sps | 84.83 | |
| d1m5wa_ | 242 | Pyridoxine 5'-phosphate synthase {Escherichia coli | 84.81 | |
| d2zdra2 | 280 | Capsule biosynthesis protein SiaC, N-terminal doma | 84.74 | |
| d1rd5a_ | 261 | Trp synthase alpha-subunit {Maize (Zea mays) [TaxI | 84.67 | |
| d1vc4a_ | 254 | Indole-3-glycerophosphate synthase, IPGS {Thermus | 83.7 | |
| d1km4a_ | 212 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 83.56 | |
| d1muma_ | 289 | 2-methylisocitrate lyase {Escherichia coli [TaxId: | 83.55 | |
| d1ny5a1 | 137 | Transcriptional activator sigm54 (NtrC1), N-termin | 83.49 | |
| d1xkya1 | 292 | Dihydrodipicolinate synthase {Bacillus anthracis [ | 82.94 | |
| d1a04a2 | 138 | Nitrate/nitrite response regulator (NarL), receive | 82.88 | |
| d1izca_ | 299 | Macrophomate synthase {Macrophoma commelinae [TaxI | 82.87 | |
| d1wufa1 | 244 | N-acylamino acid racemase {Listeria innocua [TaxId | 82.76 | |
| d1qpoa1 | 169 | Quinolinic acid phosphoribosyltransferase (Nicotin | 82.01 | |
| d1dbta_ | 237 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 81.89 | |
| d1xxxa1 | 296 | Dihydrodipicolinate synthase {Mycobacterium tuberc | 81.13 | |
| d1u0sy_ | 118 | CheY protein {Thermotoga maritima [TaxId: 2336]} | 80.93 | |
| d2pl1a1 | 119 | PhoP receiver domain {Escherichia coli [TaxId: 562 | 80.49 | |
| d2mnra1 | 227 | Mandelate racemase {Pseudomonas putida [TaxId: 303 | 80.03 |
| >d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=100.00 E-value=4.8e-65 Score=530.44 Aligned_cols=358 Identities=61% Similarity=0.917 Sum_probs=311.6
Q ss_pred EeccccccccCCCCCCC-CccCCcccccccccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHH
Q psy1056 69 VTSRDVDFLENSANMDL-KIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQ 147 (590)
Q Consensus 69 vT~~Did~l~~~~~~~~-~~~~~~~~~l~~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~ 147 (590)
+||+ |+++.|+++++ ++++++++++++.+.++.|+++++|+++++..|+.++++.||+|++|++.+
T Consensus 14 Ltfd--DVllvP~~st~~sr~V~l~t~lt~~~~l~iPIIsApMdtVt~~~mA~als~~GGLGvLhr~~~----------- 80 (378)
T d1jr1a1 14 LTYN--DFLILPGYIDFTADQVDLTSALTKKITLKTPLVSSPMDTVTEAGMAIAMALTGGIGFIHHNCT----------- 80 (378)
T ss_dssp CCGG--GEEECCCCCCSCGGGCBCCEESSSSCEESSCEEECCCTTTCSHHHHHHHHHHTCEEEECCSSC-----------
T ss_pred CCcc--cEEEeCCCCCCcHHHceeeeEEECCccCCCCEEECCCCCcCCHHHHHHHHHCCCeeEEcCCCC-----------
Confidence 8999 89999999999 778999999998899999999999999999999999999999999999876
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHhhhcCCCcccccccccchHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCe
Q psy1056 148 AGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEK 227 (590)
Q Consensus 148 ~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~im~~~~~~~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~ 227 (590)
.+.+.++++.++. +..
T Consensus 81 --------------~e~~~~ev~~v~~-~~~------------------------------------------------- 96 (378)
T d1jr1a1 81 --------------PEFQANEVRKVKK-YEQ------------------------------------------------- 96 (378)
T ss_dssp --------------HHHHHHHHHHHHT-SCC-------------------------------------------------
T ss_pred --------------HHHHHHHHheehh-hhh-------------------------------------------------
Confidence 5556666655543 100
Q ss_pred EEEEEecchhhccccccccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccC
Q psy1056 228 LLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRD 307 (590)
Q Consensus 228 lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~ 307 (590)
. +.
T Consensus 97 --------------------~----------p~----------------------------------------------- 99 (378)
T d1jr1a1 97 --------------------Y----------PL----------------------------------------------- 99 (378)
T ss_dssp --------------------C----------TT-----------------------------------------------
T ss_pred --------------------C----------cc-----------------------------------------------
Confidence 0 00
Q ss_pred CCCCCcccCCceEEeEeeccchhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHH
Q psy1056 308 YPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRA 387 (590)
Q Consensus 308 ~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~ 387 (590)
...+...++.++++++...+..+.++.+.++|+++++++.++|+...+.+.++++++.+|++|+|+|||.|++.|+.
T Consensus 100 ---~~~~~~~~l~v~aavg~~~~~~~~~~~l~~agv~vi~id~a~g~~~~~~~~i~~ik~~~~~~~iIaGnVaT~e~a~~ 176 (378)
T d1jr1a1 100 ---ASKDAKKQLLCGAAIGTHEDDKYRLDLLALAGVDVVVLDSSQGNSIFQINMIKYMKEKYPNLQVIGGNVVTAAQAKN 176 (378)
T ss_dssp ---CCBCTTSCBCCEEEECSSTHHHHHHHHHHHHTCCEEEECCSSCCSHHHHHHHHHHHHHSTTCEEEEEEECSHHHHHH
T ss_pred ---cccccccCEEEEEEeccCHHHHHHHHHHHhhccceEeeeccCccchhhHHHHHHHHHHCCCCceeecccccHHHHHH
Confidence 00011223345677777777888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHCCCCEEEE-----cccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcc
Q psy1056 388 TLLNFIYQIEM-----IKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSL 461 (590)
Q Consensus 388 l~~~Gvd~i~v-----~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~ 461 (590)
|+++|||+|.| ++|+||. .+|.|+ +++++.+|++++...++||||||||++++|++|||++|||+||||++
T Consensus 177 L~~aGAD~VkVGiG~Gs~ctTr~---~tGvG~pq~sai~~~~~~a~~~~vpIIADGGi~~~gdiakAla~GAd~VMmGs~ 253 (378)
T d1jr1a1 177 LIDAGVDALRVGMGCGSICITQE---VLACGRPQATAVYKVSEYARRFGVPVIADGGIQNVGHIAKALALGASTVMMGSL 253 (378)
T ss_dssp HHHHTCSEEEECSSCSTTBCHHH---HHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEESTT
T ss_pred HHHhCCCEEeecccccccccccc---ccccCcccchhhhHHHHhhcccCCceecccccccCCceeeEEEeecceeeecce
Confidence 99999999999 8899999 999999 99999999999988899999999999999999999999999999999
Q ss_pred ccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecccceeEEeeCCchhchHHHHHhhhh
Q psy1056 462 LAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCGLK 541 (590)
Q Consensus 462 l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~~~~~~~~~~~l~ 541 (590)
|++|+||||++++.+|+.||.||||||..||.+. .++.++|+.+..+.+++||+++.+||+|++.+++++|.++||
T Consensus 254 fAgt~EspG~~~~~~g~~~k~~~gm~S~~a~~~~----~~~~~~~~~~~~~~~~~eG~~~~v~~~G~v~~~~~~l~gglr 329 (378)
T d1jr1a1 254 LAATTEAPGEYFFSDGIRLKKYRGMGSLDAMDKH----LSSQNRYFSEADKIKVAQGVSGAVQDKGSIHKFVPYLIAGIQ 329 (378)
T ss_dssp TTTBTTSSSCCEESSSCEEEEEECTTSTTTC--------------------CCCCCBCEEEEECCBCHHHHHHHHHHHHH
T ss_pred eeeeecccCccceecCceeeeccccchhhhhhcc----cchhhhhccccccccCCCccEEeeccCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998753 457789998888888999999999999999999999999999
Q ss_pred hhCcccCcCcHHHHHHhhccCceEEEEEecCccccCCCCcccccccccC
Q psy1056 542 HGCQDIGAKSLSNLRAMMYSGELKFEKRTLCAQNEGSVHGLYSYEKRLF 590 (590)
Q Consensus 542 ~~m~~~G~~~i~~l~~~~~~~~~~~~~~~~~~~~e~~~h~~~~~~~~~~ 590 (590)
|+|+|+|++||+|||+..|+++++|+++|++|++||+|||+++|+||||
T Consensus 330 s~m~y~G~~~l~e~~~~~~~~~~~f~~~t~~~~~e~~~h~~~~~~~~~~ 378 (378)
T d1jr1a1 330 HSCQDIGAKSLTQVRAMMYSGELKFEKRTSSAQVEGGVHSLHSYEKRLF 378 (378)
T ss_dssp HHHHHTTCSBHHHHHHHHHHSCSCEEECCHHHHHHHSCCSCSCCCCCCC
T ss_pred HhhhccCcCcHHHHHhhhccCCceEEEEChhhhhccCCCcccccccccC
Confidence 9999999999999999999999999999999999999999999999998
|
| >d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
Probab=100.00 E-value=3.1e-62 Score=512.57 Aligned_cols=371 Identities=33% Similarity=0.446 Sum_probs=286.9
Q ss_pred EeccccccccCCCCCCC-CccCCcccccccccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHH
Q psy1056 69 VTSRDVDFLENSANMDL-KIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQ 147 (590)
Q Consensus 69 vT~~Did~l~~~~~~~~-~~~~~~~~~l~~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~ 147 (590)
+||+ |+++.|+++++ ++++++++.+++.+.++.|+++++||+|++..|+++|++.||+|++|+|++
T Consensus 8 LtfD--DVlLvP~~st~~~~~vdl~~~~t~~~~l~iPIisA~MDtVt~~~mAi~ma~~GGlgVihr~~~----------- 74 (388)
T d1eepa_ 8 LTFD--DVSLIPRKSSVLPSEVSLKTQLTKNISLNIPFLSSAMDTVTESQMAIAIAKEGGIGIIHKNMS----------- 74 (388)
T ss_dssp CCGG--GEEECCCCCCSCGGGCCCCEESSSSCEESSSEEECCCTTTCSHHHHHHHHHHTSEEEECSSSC-----------
T ss_pred CCcc--cEEEeCCCCCCCHHHceeeEEeeCCEecCCCEEecCCCCCCCHHHHHHHHHCCCEEEEeCCCC-----------
Confidence 8999 99999999998 889999999998999999999999999999999999999999999999988
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHhhhcCCCcccccccccchHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCe
Q psy1056 148 AGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEK 227 (590)
Q Consensus 148 ~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~im~~~~~~~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~ 227 (590)
.+.+.++++.+|. +..... ..
T Consensus 75 --------------ie~q~~~v~~Vk~-~~~~~~-----------------------------------~~--------- 95 (388)
T d1eepa_ 75 --------------IEAQRKEIEKVKT-YKFQKT-----------------------------------IN--------- 95 (388)
T ss_dssp --------------HHHHHHHHHHHHT-CC--------------------------------------------------
T ss_pred --------------HHHHHHHHHHhhh-cccccc-----------------------------------cc---------
Confidence 8888888988886 321100 00
Q ss_pred EEEEEecchhhccccccccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccC
Q psy1056 228 LLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRD 307 (590)
Q Consensus 228 lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~ 307 (590)
+..|... ...++|+ ... .+....+..|+.+...
T Consensus 96 -----~~~d~~~---------~~~~~~t-------~~~--------------------------~~~~~~a~~d~~~~~~ 128 (388)
T d1eepa_ 96 -----TNGDTNE---------QKPEIFT-------AKQ--------------------------HLEKSDAYKNAEHKED 128 (388)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred -----ccCcccc---------ccchhhh-------hhh--------------------------hhhhhHHHHhHHHHhh
Confidence 0111100 0001111 111 0111223445555566
Q ss_pred CCCCCcccCCceEEeEeeccchhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHH
Q psy1056 308 YPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRA 387 (590)
Q Consensus 308 ~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~ 387 (590)
++...++..+++.++++++...+..+++..|+++|+|+++||.++|+...+++.++++++.+|++|||+|||.|++.|+.
T Consensus 129 ~p~~~~d~~~~l~vgaAvg~~~~~~~ra~~L~~aG~D~ivID~AhG~s~~~~~~i~~ik~~~~~v~vIaGNV~T~e~a~~ 208 (388)
T d1eepa_ 129 FPNACKDLNNKLRVGAAVSIDIDTIERVEELVKAHVDILVIDSAHGHSTRIIELIKKIKTKYPNLDLIAGNIVTKEAALD 208 (388)
T ss_dssp CTTCCBCTTSCBCCEEEECSCTTHHHHHHHHHHTTCSEEEECCSCCSSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHH
T ss_pred hhHHHhhhhccchhhhccCCCHHHHHHHHHHHhhccceeeeeccccchHHHHHHHHHHHHHCCCCceeeccccCHHHHHH
Confidence 67777788899999999999989999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHCCCCEEEE-----cccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcc
Q psy1056 388 TLLNFIYQIEM-----IKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSL 461 (590)
Q Consensus 388 l~~~Gvd~i~v-----~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~ 461 (590)
|+++|||+|+| ++|+||. .+|.|+ +++++.+|.+.+...++||||||||++++||+|||++|||+||+|++
T Consensus 209 L~~~GaD~VkVGiGpGs~CtTr~---~~GvG~pq~sai~~~~~~~~~~~vpiIADGGi~~~Gdi~KAla~GAd~VMlG~~ 285 (388)
T d1eepa_ 209 LISVGADCLKVGIGPGSICTTRI---VAGVGVPQITAICDVYEACNNTNICIIADGGIRFSGDVVKAIAAGADSVMIGNL 285 (388)
T ss_dssp HHTTTCSEEEECSSCSTTSHHHH---HHCCCCCHHHHHHHHHHHHTTSSCEEEEESCCCSHHHHHHHHHHTCSEEEECHH
T ss_pred HHhcCCCeeeecccccccccccc---ccccCcchHHHHHHHHHHhccCCceEEeccccCcCCceeeeEEeccceeecchh
Confidence 99999999999 8999999 999999 99999999999888889999999999999999999999999999999
Q ss_pred ccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhcc---ccceeecccceeEEeeCCchhchHHHHHh
Q psy1056 462 LAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNE---MDKLKVAQGVSGAIVDKGSVLRFLPYLQC 538 (590)
Q Consensus 462 l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~---~~~~~~~eg~~~~~~~~~~~~~~~~~~~~ 538 (590)
|++|+||||++++.+|+.||.||||||.+||.+ |+.++|++. ..+.+++||+|+.+||+|++.++|.+|.+
T Consensus 286 lAg~~Espg~~~~~~g~~~k~~~gm~S~~a~~~------g~~~~~~~~~~~~~~~~~~EG~~~~v~~~G~~~~~~~~l~g 359 (388)
T d1eepa_ 286 FAGTKESPSEEIIYNGKKFKSYVGMGSISAMKR------GSKSRYFQLENNEPKKLVPEGIEGMVPYSGKLKDILTQLKG 359 (388)
T ss_dssp HHTBTTSSSCEEEETTEEEEC------------------------------------------CEECCBCHHHHHHHHHH
T ss_pred hhcccCCCceEEEeCCcEeecccccccHHHHhc------cccccccccccccccccccCceEEEeCCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999974 677788763 22456899999999999999999999999
Q ss_pred hhhhhCcccCcCcHHHHHHhhccCceEEEEEecC
Q psy1056 539 GLKHGCQDIGAKSLSNLRAMMYSGELKFEKRTLC 572 (590)
Q Consensus 539 ~l~~~m~~~G~~~i~~l~~~~~~~~~~~~~~~~~ 572 (590)
+||++|+|+|+.||+|||++ ++|+++|++
T Consensus 360 glrs~m~y~Ga~~l~e~~~~-----~~fv~vt~~ 388 (388)
T d1eepa_ 360 GLMSGMGYLGAATISDLKIN-----SKFVKISHS 388 (388)
T ss_dssp HHHHHHHHHTCSSHHHHHHS-----CCEEECCCC
T ss_pred HHHHHhhccCcccHHHHhhC-----CEEEEECCC
Confidence 99999999999999999998 999999975
|
| >d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=100.00 E-value=3.3e-60 Score=490.56 Aligned_cols=337 Identities=30% Similarity=0.450 Sum_probs=294.1
Q ss_pred EEeccccccccCCCCCCC-CccCCcccccccccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHH
Q psy1056 68 IVTSRDVDFLENSANMDL-KIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLS 146 (590)
Q Consensus 68 ivT~~Did~l~~~~~~~~-~~~~~~~~~l~~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~ 146 (590)
-+|++ |+++.|+++++ ++++++++++++.+.+..|+++++||++++..|++++++.||+|++|++.+
T Consensus 11 ~l~fd--DVllvP~~st~~s~~vdl~~~it~~~~~~iPIIsA~MDtV~~~~mA~~ls~~Gglgvlhr~~~---------- 78 (365)
T d1zfja1 11 GYTFD--DVLLIPAESHVLPNEVDLKTKLADNLTLNIPIITAAMDTVTGSKMAIAIARAGGLGVIHKNMS---------- 78 (365)
T ss_dssp CCCGG--GEEECCCCCCSCGGGCCCCEEEETTEEESSSEEECCCTTTCSHHHHHHHHHTTCEEEECCSSC----------
T ss_pred cCCcc--eEEEeCCCCCcCHhHceeeEEeeCCcccCCCEEECCCCCcCCHHHHHHHHHCCCceEEcCccC----------
Confidence 37999 89999999998 789999999998889999999999999999999999999999999999875
Q ss_pred HcCCcEEEEcCCCCchHHHHHHHHHhhhcCCCcccccccccchHHHHHHHHHhccccccccccccCceeeEEeeCCCCCC
Q psy1056 147 QAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGE 226 (590)
Q Consensus 147 ~~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~im~~~~~~~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~ 226 (590)
.+.+.+.+...++ .
T Consensus 79 ---------------~~e~~~~~~~~~~-----------------------~---------------------------- 92 (365)
T d1zfja1 79 ---------------ITEQAEEVRKVKR-----------------------S---------------------------- 92 (365)
T ss_dssp ---------------HHHHHHHHHHHHH-----------------------H----------------------------
T ss_pred ---------------HHHHHHHhhhhhh-----------------------c----------------------------
Confidence 2222222221111 0
Q ss_pred eEEEEEecchhhccccccccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccccc
Q psy1056 227 KLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSR 306 (590)
Q Consensus 227 ~lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~ 306 (590)
T Consensus 93 -------------------------------------------------------------------------------- 92 (365)
T d1zfja1 93 -------------------------------------------------------------------------------- 92 (365)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCcccCCceEEeEeeccchhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHH
Q psy1056 307 DYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPR 386 (590)
Q Consensus 307 ~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~ 386 (590)
..+++++++++...+..+++..++++|+++++||.++|+...+.+.++++++.+|++++|+|||.|++.++
T Consensus 93 ---------~~~~~v~aavGv~~~~~er~~~l~~agvd~ivID~A~G~s~~~~~~i~~ik~~~~~~~iIaGNV~T~e~a~ 163 (365)
T d1zfja1 93 ---------EGRLLVAAAVGVTSDTFERAEALFEAGADAIVIDTAHGHSAGVLRKIAEIRAHFPNRTLIAGNIATAEGAR 163 (365)
T ss_dssp ---------TSCBCCEEEECSSTTHHHHHHHHHHHTCSEEEECCSCTTCHHHHHHHHHHHHHCSSSCEEEEEECSHHHHH
T ss_pred ---------cCceEEEEEeccCchHHHHHHHHHHcCCCEEEEECCcccccchhHHHHHHHhhCCCcceeecccccHHHHH
Confidence 00112345566666778899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCCCEEEE-----cccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECc
Q psy1056 387 ATLLNFIYQIEM-----IKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGS 460 (590)
Q Consensus 387 ~l~~~Gvd~i~v-----~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~ 460 (590)
.|+++|||+|.| ++|+||. .+|.|+ +++++.+|++++...++||||||||++++||+|||++|||+||+|+
T Consensus 164 ~L~~aGaD~VkVGiG~Gs~CTTr~---~tGvGvPq~sai~~~~~~~~~~~~~iIADGGi~~~GDi~KAla~GAd~VMlG~ 240 (365)
T d1zfja1 164 ALYDAGVDVVKVGIGPGSICTTRV---VAGVGVPQVTAIYDAAAVAREYGKTIIADGGIKYSGDIVKALAAGGNAVMLGS 240 (365)
T ss_dssp HHHHTTCSEEEECSSCCTTBCHHH---HTCCCCCHHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHTTCSEEEEST
T ss_pred HHHhcCCceEEeeecccccccCcc---eeeeeccchhHHHHHHHHHHhCCceEEecCCcCcchhhhhhhhccCCEEEecc
Confidence 999999999999 8899999 999999 9999999999988889999999999999999999999999999999
Q ss_pred cccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhcc---ccceeecccceeEEeeCCchhchHHHHH
Q psy1056 461 LLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNE---MDKLKVAQGVSGAIVDKGSVLRFLPYLQ 537 (590)
Q Consensus 461 ~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~---~~~~~~~eg~~~~~~~~~~~~~~~~~~~ 537 (590)
+|++++||||++++.+|+.||.||||||..||.+ |+..|++.. ....+++||+++.+||+|++.+++.+|.
T Consensus 241 ~lAg~~EsPG~~~~~~g~~~k~~~Gm~s~~a~~~------~~~~r~~~~~~~~~~~~~~eG~~~~v~~~G~~~~~~~~l~ 314 (365)
T d1zfja1 241 MFAGTDEAPGETEIYQGRKYKTYRGMGSIAAMKK------GSSDRYFQGSVNEANKLVPEGIEGRVAYKGAASDIVFQML 314 (365)
T ss_dssp TTTTBSSCCCCEEEETTEEEEEEECTTSHHHHCC--------------------CCCCCSBCEEEEECCBCHHHHHHHHH
T ss_pred hhccccCCCCcEEEECCeEeeecCCcccHhhhhc------ccccccccccccccccccccCceEEeccCCCHHHHHHHHH
Confidence 9999999999999999999999999999999875 455555542 2245689999999999999999999999
Q ss_pred hhhhhhCcccCcCcHHHHHHhhccCceEEEEEecCccccCCCCccccc
Q psy1056 538 CGLKHGCQDIGAKSLSNLRAMMYSGELKFEKRTLCAQNEGSVHGLYSY 585 (590)
Q Consensus 538 ~~l~~~m~~~G~~~i~~l~~~~~~~~~~~~~~~~~~~~e~~~h~~~~~ 585 (590)
++||++|+|+|++||+|||++ ++|+++|++|++||+|||++..
T Consensus 315 gglrs~m~y~G~~~l~e~~~~-----~~fv~vt~~~~~E~~~h~~~~~ 357 (365)
T d1zfja1 315 GGIRSGMGYVGAGDIQELHEN-----AQFVEMSGAGLIESHPHDVQIT 357 (365)
T ss_dssp HHHHHHHHHTTCSSHHHHHHH-----CCEEECCHHHHHHHSCCSSCCS
T ss_pred HHHHHHHhhcCCCcHHHHhhC-----CEEEEECcccccccCCcceEEe
Confidence 999999999999999999998 9999999999999999999743
|
| >d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Tritrichomonas foetus [TaxId: 5724]
Probab=100.00 E-value=6.3e-59 Score=483.12 Aligned_cols=328 Identities=28% Similarity=0.344 Sum_probs=282.6
Q ss_pred EeccccccccCCCCCCC---CccCCccccccc-------ccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcch
Q psy1056 69 VTSRDVDFLENSANMDL---KIEKDLSSPLTK-------KITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREAD 138 (590)
Q Consensus 69 vT~~Did~l~~~~~~~~---~~~~~~~~~l~~-------~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~ 138 (590)
+||+ |+++.|+++++ |+++++++++++ .+.+..|++++||||+++..|+.++++.||+|++|++.+
T Consensus 9 ltFd--DVlLvP~~Sti~s~r~dVdl~~~l~~~~~~~~~~i~l~iPIIsAnMDTVt~~~mA~~la~~GglgvihR~~~-- 84 (362)
T d1pvna1 9 HTFN--EYLLIPGLSTVDCIPSNVNLSTPLVKFQKGQQSEINLKIPLVSAIMQSVSGEKMAIALAREGGISFIFGSQS-- 84 (362)
T ss_dssp CCGG--GEEECCCCBCTTCCGGGCBCCEECSCEETTSCCSCEESSSEEECSCTTTCSHHHHHHHHHTTCEEEECCSSC--
T ss_pred CCcc--ceEEeCCCCcCCCCccceeeeeEEEeeccccccccccCCcEEecCCCCcCCHHHHHHHHHCCCEEEEeecCC--
Confidence 7899 99999999876 789999988763 567889999999999999999999999999999999876
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCchHHHHHHHHHhhhcCCCcccccccccchHHHHHHHHHhccccccccccccCceeeEE
Q psy1056 139 KYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGLRVGSHGCHGFCGFPV 218 (590)
Q Consensus 139 ~~~~~~l~~~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~im~~~~~~~~~~~~a~~~m~~~~~v~~~~~~~~~~~pV 218 (590)
.+.+..++...+. .. ...
T Consensus 85 -----------------------ie~~~~~~~~~~~-~~---------------------------------~~~----- 102 (362)
T d1pvna1 85 -----------------------IESQAAMVHAVKN-FR---------------------------------YLV----- 102 (362)
T ss_dssp -----------------------HHHHHHHHHHHHT-CC---------------------------------CCC-----
T ss_pred -----------------------HHHHHHHhhhhhh-cc---------------------------------ccc-----
Confidence 4444444433322 00 000
Q ss_pred eeCCCCCCeEEEEEecchhhccccccccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEe
Q psy1056 219 TENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIA 298 (590)
Q Consensus 219 vd~~~~~~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit 298 (590)
...
T Consensus 103 -----------------------------------------~~~------------------------------------ 105 (362)
T d1pvna1 103 -----------------------------------------GAG------------------------------------ 105 (362)
T ss_dssp -----------------------------------------EEE------------------------------------
T ss_pred -----------------------------------------ccc------------------------------------
Confidence 000
Q ss_pred ecccccccCCCCCCcccCCceEEeEeeccchhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhC-CCceEEec
Q psy1056 299 RTDLKKSRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEY-PDMQVIGG 377 (590)
Q Consensus 299 ~~dll~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~-~~vpvi~g 377 (590)
....+..++++.+.+++++++++|.++|+...+.+.++++++.+ +..|+++|
T Consensus 106 ---------------------------~~~~~~~~~~~~L~~ag~d~i~IDvAhG~~~~v~~~i~~ir~~~~~~~~IiAG 158 (362)
T d1pvna1 106 ---------------------------INTRDFRERVPALVEAGADVLCIDSSDGFSEWQKITIGWIREKYGDKVKVGAG 158 (362)
T ss_dssp ---------------------------ECSSSHHHHHHHHHHHTCSEEEECCSCCCBHHHHHHHHHHHHHHGGGSCEEEE
T ss_pred ---------------------------cchhhhHHHHHHHhhcCceEEeechhccchhHHHHHHHHHHHhhccceeeecc
Confidence 00112346677889999999999999999999999999998766 56899999
Q ss_pred cccCcHHHHHHHHCCCCEEEE-----cccccccCCCcccccc-chhHHHHHHHHHhc------CCCcEEecCCCCCHHHH
Q psy1056 378 NVLFGYQPRATLLNFIYQIEM-----IKFIKKEYPDMQVIGR-NGTAVYRVAEYASR------RGVPVIADGGVQSVGHV 445 (590)
Q Consensus 378 ~v~s~~~a~~l~~~Gvd~i~v-----~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~------~~v~iia~GGi~~~~di 445 (590)
||.|++.++.|+++|||+|+| ++|+||. .+|.|+ |++++.+|+.++.+ .++||||||||++++|+
T Consensus 159 NVaT~e~~~~L~~aGaD~vkVGIG~Gs~CTTr~---~tGvG~Pq~sAv~e~a~~~~~~~~~~~~~v~iiaDGGi~~~gdi 235 (362)
T d1pvna1 159 NIVDGEGFRYLADAGADFIKIGIGGGSICITRE---QKGIGRGQATAVIDVVAERNKYFEETGIYIPVCSDGGIVYDYHM 235 (362)
T ss_dssp EECSHHHHHHHHHHTCSEEEECSSCSTTBCHHH---HTCBCCCHHHHHHHHHHHHHHHHHHHSEECCEEEESCCCSHHHH
T ss_pred cccCHHHHHHHHHhCCcEEEecccccccccchh---hhccCCchHHHHHHHHHHHHHhhhhcccCCceeeccccCcccce
Confidence 999999999999999999999 8999999 999999 99999999877653 25999999999999999
Q ss_pred HHHHHcCCCEEEECccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhh-ccccceeecccceeEEe
Q psy1056 446 MKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFH-NEMDKLKVAQGVSGAIV 524 (590)
Q Consensus 446 ~kalalGA~~v~~g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~-~~~~~~~~~eg~~~~~~ 524 (590)
+|||++|||+||+|++|++++||||++++.+|++||.||||||.+||.+ .+|. .+..+..++||+|+.||
T Consensus 236 ~KAla~GAd~VM~G~~lAg~~Espg~~~~~~g~~~k~~~Gm~S~~a~~~---------~~~~~~~~~~~~~~eG~~~~v~ 306 (362)
T d1pvna1 236 TLALAMGADFIMLGRYFARFEESPTRKVTINGSVMKEYWGEGSSRARNW---------QRYDLGGKQKLSFEEGVDSYVP 306 (362)
T ss_dssp HHHHHTTCSEEEESHHHHTBTTSSSCEEEETTEEEEEEECTTSTTTCCG---------GGGCSSSCSSCSSCCBCEEEEE
T ss_pred eEEEEEeccceeehhhhhcccccCCcceeeccceeeeeecccccccccc---------ccccccccccccCCCCcEEEec
Confidence 9999999999999999999999999999999999999999999999754 2332 23344569999999999
Q ss_pred eCCchhchHHHHHhhhhhhCcccCcCcHHHHHHhhccCceEEEEEecCccccCCCCccc
Q psy1056 525 DKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRAMMYSGELKFEKRTLCAQNEGSVHGLY 583 (590)
Q Consensus 525 ~~~~~~~~~~~~~~~l~~~m~~~G~~~i~~l~~~~~~~~~~~~~~~~~~~~e~~~h~~~ 583 (590)
|+|++.+++++|.++|||+|+|+||+||+|||++ ++|+++|++||+||+|||+.
T Consensus 307 ~~g~~~~~~~~l~gglrs~~~y~G~~~l~~~~~~-----~~f~~~t~~~~~E~~~H~~~ 360 (362)
T d1pvna1 307 YAGKLKDNVEASLNKVKSTMCNCGALTIPQLQSK-----AKITLVSSVSIVEGGAHDVI 360 (362)
T ss_dssp CCBCHHHHHHHHHHHHHHHHHHTTCSBHHHHHHH-----CEEEEBCHHHHHHHSCCSSE
T ss_pred cCCCHHHHHHHHHHHHHHHHhhcCcCcHHHHHhC-----CEEEEECccccccccCCceE
Confidence 9999999999999999999999999999999998 99999999999999999985
|
| >d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=5.2e-58 Score=476.15 Aligned_cols=341 Identities=33% Similarity=0.470 Sum_probs=290.8
Q ss_pred EeccccccccCCCCCCC-CccCCcccccccccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHH
Q psy1056 69 VTSRDVDFLENSANMDL-KIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQ 147 (590)
Q Consensus 69 vT~~Did~l~~~~~~~~-~~~~~~~~~l~~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~ 147 (590)
+|++ |+++.|+++++ +.++++++++++.+.+..|+++++|||+++..|++++++.||+|++|++.+
T Consensus 13 ltfd--DVlLvP~~sti~srdVdls~~~~~~~~l~iPIiss~MDtV~~~~mA~~la~~Gglgvlhr~~~----------- 79 (368)
T d2cu0a1 13 YTFD--DVLLIPQATEVEPKDVDVSTRITPNVKLNIPILSAAMDTVTEWEMAVAMAREGGLGVIHRNMG----------- 79 (368)
T ss_dssp CCGG--GEEECCCCCSSCSTTCBCCEEEETTEEESSSEEECCCTTTCSHHHHHHHHHTTCEEEECSSSC-----------
T ss_pred CCcc--cEEEeCCCCcCchhhceeeEEeeCCcccCCCEEeCCCCCcCCHHHHHHHHHCCCeeEecccCC-----------
Confidence 6899 89999999998 778899999998888999999999999999999999999999999999877
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHhhhcCCCcccccccccchHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCe
Q psy1056 148 AGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEK 227 (590)
Q Consensus 148 ~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~im~~~~~~~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~ 227 (590)
.+.+.+++..++. ...
T Consensus 80 --------------~e~~~~~v~~v~~-~e~------------------------------------------------- 95 (368)
T d2cu0a1 80 --------------IEEQVEQVKRVKR-AEK------------------------------------------------- 95 (368)
T ss_dssp --------------HHHHHHHHHHHHT-CCC-------------------------------------------------
T ss_pred --------------HHHHHHHHHhhhh-hhh-------------------------------------------------
Confidence 6666766666553 100
Q ss_pred EEEEEecchhhccccccccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccC
Q psy1056 228 LLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRD 307 (590)
Q Consensus 228 lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~ 307 (590)
T Consensus 96 -------------------------------------------------------------------------------- 95 (368)
T d2cu0a1 96 -------------------------------------------------------------------------------- 95 (368)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcccCCceEEeEeeccchhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHH
Q psy1056 308 YPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRA 387 (590)
Q Consensus 308 ~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~ 387 (590)
+.....+.+..+++++.++ +...+++..++++|+++++||.++|+...+.+.+++++..+ ++|+|+|||.|++.++.
T Consensus 96 ~~~~~~d~~~~~~v~~~~~--~~~~~r~~~l~~aGvd~ivID~A~Gh~~~~i~~lK~ir~~~-~~~vIaGNVaT~e~~~~ 172 (368)
T d2cu0a1 96 YKNAVRDENGELLVAAAVS--PFDIKRAIELDKAGVDVIVVDTAHAHNLKAIKSMKEMRQKV-DADFIVGNIANPKAVDD 172 (368)
T ss_dssp CTTCCBCTTSCBCCEEEEC--TTCHHHHHHHHHTTCSEEEEECSCCCCHHHHHHHHHHHHTC-CSEEEEEEECCHHHHTT
T ss_pred ccccccccCccEEEEeccC--hHHHHHHHHHHHcCCCEEEecCcccchhhhhhhhhhhhhhc-ccceeeccccCHHHHHh
Confidence 0000011122223333333 23457788899999999999999999999999999999999 58999999999999976
Q ss_pred HHHCCCCEEEE-----cccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcc
Q psy1056 388 TLLNFIYQIEM-----IKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSL 461 (590)
Q Consensus 388 l~~~Gvd~i~v-----~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~ 461 (590)
+ .|||+|.| ++|+||. .+|.|+ +++++.+|++.+...++||||||||++++||+|||++|||+||+|++
T Consensus 173 l--~gaD~VkVGIG~Gs~CTTr~---~tGvG~Pq~sAi~e~~~~~~~~~~~iiADGGi~~~Gdi~KAla~GAd~VMlG~~ 247 (368)
T d2cu0a1 173 L--TFADAVKVGIGPGSICTTRI---VAGVGVPQITAVAMVADRAQEYGLYVIADGGIRYSGDIVKAIAAGADAVMLGNL 247 (368)
T ss_dssp C--TTSSEEEECSSCSTTBCHHH---HTCCCCCHHHHHHHHHHHHHHHTCEEEEESCCCSHHHHHHHHHTTCSEEEESTT
T ss_pred h--hcCcceeecccCcccccchh---hcccccchHHHHHHHHHHHhccCCeeEecCCCCcCChhheeeeeccceeeccch
Confidence 5 69999999 8999999 999999 99999999998888899999999999999999999999999999999
Q ss_pred ccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhcc---ccceeecccceeEEeeCCchhchHHHHHh
Q psy1056 462 LAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNE---MDKLKVAQGVSGAIVDKGSVLRFLPYLQC 538 (590)
Q Consensus 462 l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~---~~~~~~~eg~~~~~~~~~~~~~~~~~~~~ 538 (590)
|++++||||++++.+|+.||.||||||..||.+ |+..+++.. .....++||+++.+||+|++.++|++|.+
T Consensus 248 lAg~~Espg~~~~~~g~~~k~~~Gm~S~~a~~~------~~~~~~~~~~~~~~~~~~~EG~~~~v~~~G~~~~~l~~l~g 321 (368)
T d2cu0a1 248 LAGTKEAPGKEVIINGRKYKQYRGMGSLGAMMK------GGAERYYQGGYMKTRKFVPEGVEGVVPYRGTVSEVLYQLVG 321 (368)
T ss_dssp TTTBTTCCSCEEEETTEEEEEEECTTSHHHHTC----------------CCCCSCSSCCBCEEEEECCBCHHHHHHHHHH
T ss_pred hccccccCCceEeeCCeEcccccCccccccccc------CCcccccccccccccccCCCceEEeeCCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999975 334444432 22346899999999999999999999999
Q ss_pred hhhhhCcccCcCcHHHHHHhhccCceEEEEEecCccccCCCCccccc
Q psy1056 539 GLKHGCQDIGAKSLSNLRAMMYSGELKFEKRTLCAQNEGSVHGLYSY 585 (590)
Q Consensus 539 ~l~~~m~~~G~~~i~~l~~~~~~~~~~~~~~~~~~~~e~~~h~~~~~ 585 (590)
+|||+|+|+|++||+|||++ ++|+++|++|++||+|||+...
T Consensus 322 glrs~m~y~G~~~l~e~~~~-----~~f~~vt~a~~~E~~~h~~~~~ 363 (368)
T d2cu0a1 322 GLKAGMGYVGARNIRELKEK-----GEFVIITHAGIKESHPHDIIIT 363 (368)
T ss_dssp HHHHHHHHTTCSBHHHHHHH-----CCEEECCHHHHHHHSCCSSCCS
T ss_pred HHHHHHHhcCcccHHHHhhC-----CEEEEECcccccccCCCCeeee
Confidence 99999999999999999998 8999999999999999998654
|
| >d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.1e-54 Score=445.13 Aligned_cols=319 Identities=36% Similarity=0.532 Sum_probs=264.9
Q ss_pred EeccccccccCCCCCCC-CccCCcccccccccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHH
Q psy1056 69 VTSRDVDFLENSANMDL-KIEKDLSSPLTKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQ 147 (590)
Q Consensus 69 vT~~Did~l~~~~~~~~-~~~~~~~~~l~~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~ 147 (590)
+||+ |+++.|+++++ ++++++++++++.+.+..|+++++|+++++..++.+++..||+|++|++.+
T Consensus 5 Ltfd--DVllvP~~s~~~sr~vdl~t~lt~~l~~~iPIIaa~MdtV~~~~mA~als~~GGlGvi~r~~~----------- 71 (330)
T d1vrda1 5 LTFD--DVLLVPQYSEVLPKDVKIDTRLTRQIRINIPLVSAAMDTVTEAALAKALAREGGIGIIHKNLT----------- 71 (330)
T ss_dssp CCGG--GEEECCCCCCCCGGGSCCCEESSSSCEESSSEEECCCTTTCSHHHHHHHHTTTCEEEECSSSC-----------
T ss_pred cccc--cEEEeCCCCCcccccceEEEEEecCcccCCCEEeCCCCCcCCHHHHHHHHHCCCeEEeecccc-----------
Confidence 7899 89999999998 678899999998888999999999999999999999999999999998764
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHhhhcCCCcccccccccchHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCe
Q psy1056 148 AGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEK 227 (590)
Q Consensus 148 ~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~im~~~~~~~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~ 227 (590)
.+.+.+.++.+++
T Consensus 72 --------------~e~~~~~i~~vk~----------------------------------------------------- 84 (330)
T d1vrda1 72 --------------PDEQARQVSIVKK----------------------------------------------------- 84 (330)
T ss_dssp --------------HHHHHHHHHHHHT-----------------------------------------------------
T ss_pred --------------hhhhHHHHHHHhh-----------------------------------------------------
Confidence 2222222222211
Q ss_pred EEEEEecchhhccccccccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccC
Q psy1056 228 LLGIVTSRDVDFLENSANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRD 307 (590)
Q Consensus 228 lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~ 307 (590)
T Consensus 85 -------------------------------------------------------------------------------- 84 (330)
T d1vrda1 85 -------------------------------------------------------------------------------- 84 (330)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcccCCceEEeEeeccchhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHH
Q psy1056 308 YPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRA 387 (590)
Q Consensus 308 ~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~ 387 (590)
.+.+++.+++...+..++++.++++|+++++|+.++|+...+.+.++++++.+|++|+++|||.|++.++.
T Consensus 85 ---------~~~~v~~~vgv~~~~~e~~~~li~agvd~ivId~A~G~~~~~~~~ik~ik~~~~~~~viaGnV~t~~~a~~ 155 (330)
T d1vrda1 85 ---------TRLLVGAAVGTSPETMERVEKLVKAGVDVIVIDTAHGHSRRVIETLEMIKADYPDLPVVAGNVATPEGTEA 155 (330)
T ss_dssp ---------CCBCCEEEECSSTTHHHHHHHHHHTTCSEEEECCSCCSSHHHHHHHHHHHHHCTTSCEEEEEECSHHHHHH
T ss_pred ---------hccEEEEEEecCHHHHHHHHHHHHCCCCEEEEecCCCCchhHHHHHHHHHHhCCCCCEEeechhHHHHHHH
Confidence 00012334444556778899999999999999999999999999999999999999999999999999999
Q ss_pred HHHCCCCEEEE-----cccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcc
Q psy1056 388 TLLNFIYQIEM-----IKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSL 461 (590)
Q Consensus 388 l~~~Gvd~i~v-----~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~ 461 (590)
|+++|||+|.| ++|+++. .+|.|+ +.+++.+|++++...++||||||||++++|++|||++|||+||||++
T Consensus 156 l~~~GaD~v~VGig~Gs~ctt~~---~~G~g~p~~sai~~~~~~~~~~~vpvIAdGGi~~~gdiakAla~GAd~Vm~Gs~ 232 (330)
T d1vrda1 156 LIKAGADAVKVGVGPGSICTTRV---VAGVGVPQLTAVMECSEVARKYDVPIIADGGIRYSGDIVKALAAGAESVMVGSI 232 (330)
T ss_dssp HHHTTCSEEEECSSCSTTCHHHH---HHCCCCCHHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEEESHH
T ss_pred HHHcCCCEEeeccccCccccccc---eeccccccchhHHHHHHHHHhcCceEEecCCcccCCchheeeeccCceeeecch
Confidence 99999999999 8899999 999999 99999999999888899999999999999999999999999999999
Q ss_pred ccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecccceeEEeeCCchhchHHHHHhhhh
Q psy1056 462 LAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCGLK 541 (590)
Q Consensus 462 l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~~~~~~~~~~~l~ 541 (590)
|++++||||++++++|+.||.||||+|..++.. +..++|+.+.....++||+++.+||+|++.++|++|.++||
T Consensus 233 fa~~~E~pg~~~~~~g~~~k~~~g~~s~~~~~~------~~~~~~~~~~~~~~~~eG~~~~v~~~g~~~~~~~~l~gglr 306 (330)
T d1vrda1 233 FAGTEEAPGETILYQGRKYKAYRGMGSLGAMRS------GSADRYGQEGENKFVPEGIEGMVPYKGTVKDVVHQLVGGLR 306 (330)
T ss_dssp HHTBTTSSSEEEEETTEEEEECBCCC-------------------------------CBCCEECCBCHHHHHHHHHHHHH
T ss_pred heeecccCccEEEECCceeeecccccccccccc------CchhhccccccccccCCCcEEecCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999998764 57788888777778999999999999999999999999999
Q ss_pred hhCcccCcCcHHHHHHhhccCceEEEEEe
Q psy1056 542 HGCQDIGAKSLSNLRAMMYSGELKFEKRT 570 (590)
Q Consensus 542 ~~m~~~G~~~i~~l~~~~~~~~~~~~~~~ 570 (590)
|+|+|+|++||+|||++ ++|+|+|
T Consensus 307 s~~~y~G~~~l~~~~~~-----~~fvrvt 330 (330)
T d1vrda1 307 SGMGYIGARTIKELQEK-----AVFVKIT 330 (330)
T ss_dssp HHHHHHTCSSHHHHHHH-----CCEEECC
T ss_pred HHHhhcCcchHHHHhcC-----CEEEEeC
Confidence 99999999999999998 8999987
|
| >d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Bacillus subtilis [TaxId: 1423]
Probab=99.83 E-value=6.5e-21 Score=195.41 Aligned_cols=169 Identities=16% Similarity=0.177 Sum_probs=124.0
Q ss_pred HHHHHHHHHcCCcEEEEecCCC----------chhhHHHHHHHHHHhCCCceEEeccc---cCcHHHHHHHHCCCCEEEE
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQG----------NSIYQIEMIKFIKKEYPDMQVIGGNV---LFGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G----------~~~~~l~~i~~i~~~~~~vpvi~g~v---~s~~~a~~l~~~Gvd~i~v 398 (590)
....+.....+.+.+.++.... ......+.++++++.+ +.|+++|.+ .++++++.+.++|||+|.|
T Consensus 110 ~~~~~~~~~~g~~ai~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~~vivk~v~~~~~~~~a~~~~~~GaD~i~v 188 (329)
T d1p0ka_ 110 AQAKEAVEMIGANALQIHLNVIQEIVMPEGDRSFSGALKRIEQICSRV-SVPVIVKEVGFGMSKASAGKLYEAGAAAVDI 188 (329)
T ss_dssp HHHHHHHHHTTCSEEEEEECTTTTC--------CTTHHHHHHHHHHHC-SSCEEEEEESSCCCHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHcCCCEEEecccccchhhhccccccccchHHHHHHHHHHc-CCCcEEEecCCcchHHHHHHHHhcCCCEEEE
Confidence 3344455567888887765321 1244578999999998 577775554 6899999999999999999
Q ss_pred cccccccCC---------C---cccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCC
Q psy1056 399 IKFIKKEYP---------D---MQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGT 465 (590)
Q Consensus 399 ~~~~~~~~~---------~---~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~ 465 (590)
+++.++... + ...|++ ++.++.++..... ++|||+|||||+|.||+|||+||||+||+|+++
T Consensus 189 ~~~gG~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~--~v~viadGGIr~g~Dv~KAlalGAdaV~iGr~~--- 263 (329)
T d1p0ka_ 189 GGYGGTNFSKIENLRRQRQISFFNSWGISTAASLAEIRSEFP--ASTMIASGGLQDALDVAKAIALGASCTGMAGHF--- 263 (329)
T ss_dssp EC---------------CCGGGGTTCSCCHHHHHHHHHHHCT--TSEEEEESSCCSHHHHHHHHHTTCSEEEECHHH---
T ss_pred cCCCCCCccccchhhcccCccchhHhHHHHHHHHHHHHhhcC--CceEEEcCCcccHHHHHHHHHcCCCchhccHHH---
Confidence 655443311 0 234555 5666666655433 599999999999999999999999999999988
Q ss_pred CCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecccceeEEeeCCchhchHHHHHhhhhhhCc
Q psy1056 466 SEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCGLKHGCQ 545 (590)
Q Consensus 466 ~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~~~~~~~~~~~l~~~m~ 545 (590)
+||++..+. + .|.++|+.|..||+.+|.
T Consensus 264 -----------------l~al~~~G~----------------------------~-------gv~~~l~~l~~el~~~m~ 291 (329)
T d1p0ka_ 264 -----------------LKALTDSGE----------------------------E-------GLLEEIQLILEELKLIMT 291 (329)
T ss_dssp -----------------HHHHHHHHH----------------------------H-------HHHHHHHHHHHHHHHHHH
T ss_pred -----------------HHHhccCCH----------------------------H-------HHHHHHHHHHHHHHHHHH
Confidence 355443322 1 178899999999999999
Q ss_pred ccCcCcHHHHHHh
Q psy1056 546 DIGAKSLSNLRAM 558 (590)
Q Consensus 546 ~~G~~~i~~l~~~ 558 (590)
++||+|++||++.
T Consensus 292 ~~G~~~i~el~~~ 304 (329)
T d1p0ka_ 292 VLGARTIADLQKA 304 (329)
T ss_dssp HHTCCBHHHHTTC
T ss_pred HhCCCCHHHhCcC
Confidence 9999999999875
|
| >d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Hydroxyacid oxidase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.82 E-value=3.7e-21 Score=198.49 Aligned_cols=139 Identities=19% Similarity=0.214 Sum_probs=119.2
Q ss_pred HHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecC
Q psy1056 359 IEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADG 437 (590)
Q Consensus 359 l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~G 437 (590)
.+.++++++.+ +.|+++|++.+.+++..+.++|+|+|+|+.+.++. + +|+. +...+.++++.... ++|||+||
T Consensus 206 ~~~i~~l~~~~-~~pii~Kgi~~~~da~~a~~~G~d~i~vsnhggr~---~-d~~~~~~~~l~~i~~~~~~-~~~iiadG 279 (349)
T d1tb3a1 206 WNDLSLLQSIT-RLPIILKGILTKEDAELAMKHNVQGIVVSNHGGRQ---L-DEVSASIDALREVVAAVKG-KIEVYMDG 279 (349)
T ss_dssp HHHHHHHHTTC-CSCEEEEEECSHHHHHHHHHTTCSEEEECCGGGTS---S-CSBCCHHHHHHHHHHHHTT-SSEEEEES
T ss_pred HHHHHHHHHhc-CCCcccchhhhhHHHHHHHHhhccceeeecccccc---c-cccccchhhcceeeeccCC-CeeEEecc
Confidence 46789999988 79999999999999999999999999999998887 4 3455 78888888877643 69999999
Q ss_pred CCCCHHHHHHHHHcCCCEEEECccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecc
Q psy1056 438 GVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQ 517 (590)
Q Consensus 438 Gi~~~~di~kalalGA~~v~~g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~e 517 (590)
|||+|.||+|||||||++|++|++|+ ||++..+
T Consensus 280 GIR~G~Dv~KALALGA~~V~igrp~L--------------------~~la~~G--------------------------- 312 (349)
T d1tb3a1 280 GVRTGTDVLKALALGARCIFLGRPIL--------------------WGLACKG--------------------------- 312 (349)
T ss_dssp SCCSHHHHHHHHHTTCSCEEESHHHH--------------------HHHHHHH---------------------------
T ss_pred CcCcHHHHHHHHHcCCCEEEEChHHH--------------------HHHHhcc---------------------------
Confidence 99999999999999999999999983 4433221
Q ss_pred cceeEEeeCCchhchHHHHHhhhhhhCcccCcCcHHHHHHh
Q psy1056 518 GVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRAM 558 (590)
Q Consensus 518 g~~~~~~~~~~~~~~~~~~~~~l~~~m~~~G~~~i~~l~~~ 558 (590)
.+ .|.++|+.|+.+||.+|+++||+|++||++.
T Consensus 313 -~~-------gv~~~l~~l~~EL~~~M~l~G~~~i~eL~~~ 345 (349)
T d1tb3a1 313 -ED-------GVKEVLDILTAELHRCMTLSGCQSVAEISPD 345 (349)
T ss_dssp -HH-------HHHHHHHHHHHHHHHHHHHHTCSBGGGCCGG
T ss_pred -HH-------HHHHHHHHHHHHHHHHHHHhCCCCHHHcCHh
Confidence 11 2788899999999999999999999999765
|
| >d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Glycolate oxidase species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=99.77 E-value=1.8e-19 Score=186.69 Aligned_cols=140 Identities=19% Similarity=0.243 Sum_probs=118.7
Q ss_pred HHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCC
Q psy1056 359 IEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGG 438 (590)
Q Consensus 359 l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GG 438 (590)
.+.++++++.+ +.|+++|.+.+.+++..+.++|++++.++.+..+. +..|+.+..++.++++.+.. ++|||+|||
T Consensus 213 ~~~v~~l~~~~-~~~~~~kg~~~~~da~~a~~~g~~~~~vsnhggr~---ld~~~~~~~~l~~i~~~~~~-~~~iiadGG 287 (359)
T d1goxa_ 213 WKDVAWLQTIT-SLPILVKGVITAEDARLAVQHGAAGIIVSNHGARQ---LDYVPATIMALEEVVKAAQG-RIPVFLDGG 287 (359)
T ss_dssp HHHHHHHHHHC-CSCEEEECCCSHHHHHHHHHTTCSEEEECCGGGTS---STTCCCHHHHHHHHHHHTTT-SSCEEEESS
T ss_pred HHHHHHHHhhc-ccceeeecccchHHHHHHHHccccceecccccccc---cccccchhhhchhhhhccCC-ccceeeccC
Confidence 46788899888 78999999999999999999999999999888887 65555577888888876643 699999999
Q ss_pred CCCHHHHHHHHHcCCCEEEECccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeeccc
Q psy1056 439 VQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQG 518 (590)
Q Consensus 439 i~~~~di~kalalGA~~v~~g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~eg 518 (590)
||||.||+||||||||+|++|++|+ |+++..+
T Consensus 288 IR~G~Di~KALaLGAd~vgigrp~L--------------------~~la~~g---------------------------- 319 (359)
T d1goxa_ 288 VRRGTDVFKALALGAAGVFIGRPVV--------------------FSLAAEG---------------------------- 319 (359)
T ss_dssp CCSHHHHHHHHHHTCSEEEECHHHH--------------------HHHHHHH----------------------------
T ss_pred cCcHHHHHHHHHcCCCEEEEcHHHH--------------------HHHHhcc----------------------------
Confidence 9999999999999999999999883 3322111
Q ss_pred ceeEEeeCCchhchHHHHHhhhhhhCcccCcCcHHHHHHh
Q psy1056 519 VSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRAM 558 (590)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~l~~~m~~~G~~~i~~l~~~ 558 (590)
.+ .|.++|+.|+.+||.+|+++||+||+||++.
T Consensus 320 ~~-------gv~~~i~~l~~EL~~~M~l~G~~~i~~L~~~ 352 (359)
T d1goxa_ 320 EA-------GVKKVLQMMRDEFELTMALSGCRSLKEISRS 352 (359)
T ss_dssp HH-------HHHHHHHHHHHHHHHHHHHHTCSBTTTCCGG
T ss_pred HH-------HHHHHHHHHHHHHHHHHHHhCCCCHHHcCHh
Confidence 11 2788899999999999999999999999876
|
| >d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Flavocytochrome b2, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.74 E-value=7.1e-19 Score=185.28 Aligned_cols=140 Identities=17% Similarity=0.188 Sum_probs=114.0
Q ss_pred HHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCcccccc-chhHHHHHHHHHh----cCCCcE
Q psy1056 359 IEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGR-NGTAVYRVAEYAS----RRGVPV 433 (590)
Q Consensus 359 l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~----~~~v~i 433 (590)
.+.+++++..+ +.|+++|.+.+.++|..+.++|+++++++.+..+. ... .. +...+.++..++. ..++||
T Consensus 235 ~~~i~~i~~~~-~~~~i~kgi~~~~da~~~~~~G~~~i~vsnhggr~---~d~-~~~~~~~l~~i~~~~~~~~v~~~~~v 309 (414)
T d1kbia1 235 WKDIEELKKKT-KLPIVIKGVQRTEDVIKAAEIGVSGVVLSNHGGRQ---LDF-SRAPIEVLAETMPILEQRNLKDKLEV 309 (414)
T ss_dssp HHHHHHHHHHC-SSCEEEEEECSHHHHHHHHHTTCSEEEECCTTTTS---STT-CCCHHHHHHHHHHHHHTTTCBTTBEE
T ss_pred HHHHHHHhccC-CceEEeeccchhHHHHHHHhcCCcceeeccccccc---ccc-ccccccchhhhhhhhhhhccCCceeE
Confidence 46789999998 78999999999999999999999999999888877 332 33 4555556555442 225899
Q ss_pred EecCCCCCHHHHHHHHHcCCCEEEECccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccce
Q psy1056 434 IADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKL 513 (590)
Q Consensus 434 ia~GGi~~~~di~kalalGA~~v~~g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~ 513 (590)
|+|||||||.||+||||||||+|++|++|+ ||++..
T Consensus 310 iadGGIR~G~DVaKALALGAdaVgigrp~L--------------------~~la~~------------------------ 345 (414)
T d1kbia1 310 FVDGGVRRGTDVLKALCLGAKGVGLGRPFL--------------------YANSCY------------------------ 345 (414)
T ss_dssp EEESSCCSHHHHHHHHHHTCSEEEECHHHH--------------------HHHHHH------------------------
T ss_pred EecCCcCcHHHHHHHHHcCCCEEEEcHHHH--------------------HHHHhc------------------------
Confidence 999999999999999999999999999883 332211
Q ss_pred eecccceeEEeeCCchhchHHHHHhhhhhhCcccCcCcHHHHHHh
Q psy1056 514 KVAQGVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRAM 558 (590)
Q Consensus 514 ~~~eg~~~~~~~~~~~~~~~~~~~~~l~~~m~~~G~~~i~~l~~~ 558 (590)
|.+ .|.++|+.|+.+||.+|+++||+||+||++.
T Consensus 346 ----G~e-------gv~~~l~~l~~EL~~~M~l~G~~si~eL~~~ 379 (414)
T d1kbia1 346 ----GRN-------GVEKAIEILRDEIEMSMRLLGVTSIAELKPD 379 (414)
T ss_dssp ----HHH-------HHHHHHHHHHHHHHHHHHHHTCCBGGGCCGG
T ss_pred ----cHH-------HHHHHHHHHHHHHHHHHHHhCCCCHHHcCHH
Confidence 111 2788899999999999999999999999866
|
| >d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Thermus thermophilus [TaxId: 274]
Probab=99.74 E-value=1.9e-18 Score=175.17 Aligned_cols=130 Identities=23% Similarity=0.225 Sum_probs=104.2
Q ss_pred CceEEeccc---cCcHHHHHHHHCCCCEEEEcccccccCC--------------Ccccccc-chhHHHHHHHHHhcCCCc
Q psy1056 371 DMQVIGGNV---LFGYQPRATLLNFIYQIEMIKFIKKEYP--------------DMQVIGR-NGTAVYRVAEYASRRGVP 432 (590)
Q Consensus 371 ~vpvi~g~v---~s~~~a~~l~~~Gvd~i~v~~~~~~~~~--------------~~~~~g~-~~~~l~~~~~~~~~~~v~ 432 (590)
+.|+++|.+ .++++++.+.++|+|+|.|+.+.++..+ ...++|+ +..++.++++... ++|
T Consensus 159 ~~p~~~k~v~~~~~~e~a~~~~~aGvd~i~vsn~gg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~al~~~~~~~~--~i~ 236 (310)
T d1vcfa1 159 PFPVMVKEVGHGLSREAALALRDLPLAAVDVAGAGGTSWARVEEWVRFGEVRHPELCEIGIPTARAILEVREVLP--HLP 236 (310)
T ss_dssp SSCEEEECSSSCCCHHHHHHHTTSCCSEEECCCBTSCCHHHHHHTC--------CCTTCSCBHHHHHHHHHHHCS--SSC
T ss_pred cCCceeeeecCcccHHHHHHHHHcCCCEEEeccccccchhhcccccccCchhhhhhhhcchHHHHHHHHHHhhcC--CCe
Confidence 688888776 5899999999999999988655442210 1345677 7778888876643 599
Q ss_pred EEecCCCCCHHHHHHHHHcCCCEEEECccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccc
Q psy1056 433 VIADGGVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDK 512 (590)
Q Consensus 433 iia~GGi~~~~di~kalalGA~~v~~g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~ 512 (590)
||+||||++|.|++|||+||||+||+|++|+ |+.+
T Consensus 237 Ii~dGGIr~g~Dv~KALalGAdaV~iGr~~l--------------------~~~~------------------------- 271 (310)
T d1vcfa1 237 LVASGGVYTGTDGAKALALGADLLAVARPLL--------------------RPAL------------------------- 271 (310)
T ss_dssp EEEESSCCSHHHHHHHHHHTCSEEEECGGGH--------------------HHHT-------------------------
T ss_pred EEeCCCCCchHHHHHHHHhCCCEeeEhHHHH--------------------HHhc-------------------------
Confidence 9999999999999999999999999999983 2211
Q ss_pred eeecccceeEEeeCCchhchHHHHHhhhhhhCcccCcCcHHHHHHh
Q psy1056 513 LKVAQGVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRAM 558 (590)
Q Consensus 513 ~~~~eg~~~~~~~~~~~~~~~~~~~~~l~~~m~~~G~~~i~~l~~~ 558 (590)
+|.+ .|.++|+.|+.||+.+|.++||+||+|||.+
T Consensus 272 ----~G~~-------gv~~~l~~l~~El~~~m~~~G~~~i~el~g~ 306 (310)
T d1vcfa1 272 ----EGAE-------RVAAWIGDYLEELRTALFAIGARNPKEARGR 306 (310)
T ss_dssp ----TCHH-------HHHHHHHHHHHHHHHHHHHHTCSSGGGGTTC
T ss_pred ----cCHH-------HHHHHHHHHHHHHHHHHHHhCCCCHHHHhhh
Confidence 1111 1788999999999999999999999999876
|
| >d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Membrane-associated (S)-mandelate dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=99.73 E-value=1.3e-18 Score=179.85 Aligned_cols=137 Identities=17% Similarity=0.286 Sum_probs=113.0
Q ss_pred HHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecC
Q psy1056 359 IEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADG 437 (590)
Q Consensus 359 l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~G 437 (590)
.+.+++++..+ +.|+++|++.+.+++..+.+.|++++.++.+.++. . +++. +...+.++.... ++|||+||
T Consensus 211 ~~~i~~l~~~~-~~~i~~kgv~~~~~~~~a~~~g~~~~~~s~~gg~~---~-~~~~~~~~~l~~i~~~~---~~~viasG 282 (353)
T d1p4ca_ 211 WEALRWLRDLW-PHKLLVKGLLSAEDADRCIAEGADGVILSNHGGRQ---L-DCAISPMEVLAQSVAKT---GKPVLIDS 282 (353)
T ss_dssp HHHHHHHHHHC-CSEEEEEEECCHHHHHHHHHTTCSEEEECCGGGTS---C-TTCCCGGGTHHHHHHHH---CSCEEECS
T ss_pred HHHHHHHHhcc-ccchhhhcchhhhhHHHHHhcCCchhhhccccccc---c-cccccchhcccchhccc---ccceeecC
Confidence 56788888888 78999999999999999999999999888877766 3 3344 666677765543 58999999
Q ss_pred CCCCHHHHHHHHHcCCCEEEECccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecc
Q psy1056 438 GVQSVGHVMKALALGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQ 517 (590)
Q Consensus 438 Gi~~~~di~kalalGA~~v~~g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~e 517 (590)
|||||.||+||||||||+|++|++|+ |+++. +
T Consensus 283 GIR~G~Dv~KALaLGAd~vgigrp~L--------------------~~l~~----------------------------~ 314 (353)
T d1p4ca_ 283 GFRRGSDIVKALALGAEAVLLGRATL--------------------YGLAA----------------------------R 314 (353)
T ss_dssp SCCSHHHHHHHHHTTCSCEEESHHHH--------------------HHHHH----------------------------H
T ss_pred CcCchHHHHHHHHcCCCEEEEcHHHH--------------------HHHHh----------------------------c
Confidence 99999999999999999999999883 22211 1
Q ss_pred cceeEEeeCCchhchHHHHHhhhhhhCcccCcCcHHHHHHh
Q psy1056 518 GVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRAM 558 (590)
Q Consensus 518 g~~~~~~~~~~~~~~~~~~~~~l~~~m~~~G~~~i~~l~~~ 558 (590)
|.+ .|.++|+.|+.|||.+|+++||+||+||++.
T Consensus 315 G~e-------gv~~~l~~l~~El~~~M~l~G~~~i~eL~~~ 348 (353)
T d1p4ca_ 315 GET-------GVDEVLTLLKADIDRTLAQIGCPDITSLSPD 348 (353)
T ss_dssp HHH-------HHHHHHHHHHHHHHHHHHHHTCCBGGGCCGG
T ss_pred cHH-------HHHHHHHHHHHHHHHHHHHhCCCCHHHcCHH
Confidence 111 2788899999999999999999999999765
|
| >d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Type II inosine monophosphate dehydrogenase CBS domains species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.66 E-value=5.2e-17 Score=142.25 Aligned_cols=121 Identities=28% Similarity=0.469 Sum_probs=99.9
Q ss_pred cccccccc--hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhccccccccccchhhccccCC
Q psy1056 181 VIGGNVVT--TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVN 258 (590)
Q Consensus 181 im~~~~~~--~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~ 258 (590)
++..|++. ++++.+|++.| .+++++++||+|+. .+++++|+||.+|+....... ......+|+.
T Consensus 3 mi~dpvtv~~~~tv~~a~~~m---------~~~~~~~~pVvD~~-~~~~lvGivt~~Di~~~~~~~--~~~~~~~~~~-- 68 (126)
T d1zfja4 3 VIIDPFFLTPEHKVSEAEELM---------QRYRISGVPIVETL-ANRKLVGIITNRDMRFISDYN--APISEHMTSE-- 68 (126)
T ss_dssp TSSSCCCBCSSSBHHHHHHHH---------HHTTCSEEEEESCT-TTCBEEEEEEHHHHHHCSCSS--SBTTTSCCCS--
T ss_pred CEeCceEECCCCCHHHHHHHH---------HHhCCCcEEEEeec-cCCeEEEEeEHHHHHHhhccC--Cceeeeeecc--
Confidence 34555544 89999999999 99999999999851 147899999999998543322 1223445565
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCCCCCCccc
Q psy1056 259 EIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDE 315 (590)
Q Consensus 259 ~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~~~~~~d~ 315 (590)
+++++++++++.+|+++|.+++++++||+|++|+++|+||++|++++..++.+.+|+
T Consensus 69 ~~~~~~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGiiT~~Dil~~~~~p~a~kD~ 125 (126)
T d1zfja4 69 HLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIEFPHAAKDE 125 (126)
T ss_dssp CCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHHCTTCCBCT
T ss_pred ceeecCCCCCHHHHHHHHHhcCCcEEEEEcCCCeEEEEEEHHHHHHHhhCccccccC
Confidence 889999999999999999999999999999999999999999999999888776553
|
| >d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein Rv2626c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.66 E-value=3e-17 Score=143.14 Aligned_cols=112 Identities=14% Similarity=0.321 Sum_probs=98.8
Q ss_pred ccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhc---cccccccccchhhc
Q psy1056 180 QVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDF---LENSANMDLKIEKV 253 (590)
Q Consensus 180 ~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~---~~~~~~~~~~V~~i 253 (590)
++|+.++.+ ++++.+|++.| .+++++++||+|+ +++++|++|.+|+.. .........+++++
T Consensus 5 diM~~~~~~v~~~~tl~~a~~~m---------~~~~~~~~pVvd~---~~~~~Giit~~Di~~~~~~~~~~~~~~~v~~i 72 (123)
T d1y5ha3 5 DIMNAGVTCVGEHETLTAAAQYM---------REHDIGALPICGD---DDRLHGMLTDRDIVIKGLAAGLDPNTATAGEL 72 (123)
T ss_dssp HHSEETCCCEETTSBHHHHHHHH---------HHHTCSEEEEECG---GGBEEEEEEHHHHHHTTGGGTCCTTTSBHHHH
T ss_pred HhcCCCCcEECCcCcHHHHHHHH---------HHcCCCceEEEec---cchhhhhhhhhhHhhhhhhcCCCcccceEEEE
Confidence 478877776 99999999999 9999999999998 689999999999862 22233345779999
Q ss_pred cccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccccc
Q psy1056 254 MTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSR 306 (590)
Q Consensus 254 m~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~ 306 (590)
|++ +++++++++++.+|+++|.+++++++||+| +|+++|+||.+||++++
T Consensus 73 m~~--~~~~v~~~~~~~~~~~~m~~~~~~~lpVvd-~~~lvGiit~~Dil~~l 122 (123)
T d1y5ha3 73 ARD--SIYYVDANASIQEMLNVMEEHQVRRVPVIS-EHRLVGIVTEADIARHL 122 (123)
T ss_dssp HTT--CCCCEETTCCHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHTC
T ss_pred eec--cceeeeecchHHHHHHHHHHcCceEEEEEE-CCEEEEEEEHHHHHhhC
Confidence 998 999999999999999999999999999998 58999999999999864
|
| >d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Type II inosine monophosphate dehydrogenase CBS domains species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.66 E-value=2.3e-18 Score=149.69 Aligned_cols=115 Identities=50% Similarity=0.893 Sum_probs=62.6
Q ss_pred cccccccc--hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhccccccccccchhhccccCC
Q psy1056 181 VIGGNVVT--TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNVN 258 (590)
Q Consensus 181 im~~~~~~--~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~~~ 258 (590)
+++.|++. ++++.+|++.| .+++++++||+|++..+++++||+|.+|+++..... .+.++.++|...+
T Consensus 2 m~~~pvtv~~~~tl~da~~~m---------~~~~i~~~pVvd~~~~~~~lvGivT~~Di~~~~~~~-~~~~~~~~~~~~~ 71 (120)
T d1jr1a4 2 FITDPVVLSPKDRVRDVFEAK---------ARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKEEE-HDRFLEEIMTKRE 71 (120)
T ss_dssp EECTTCC----CCCC--CCBC------------------------CTTCCC-----------------------CCSBTT
T ss_pred cccCCEEECCcCCHHHHHHHH---------HHhCCCeEEEeeccccCCeEeeeeeeeeeeehhccc-cCceeEEEEeecc
Confidence 34556555 88999999999 999999999998644468999999999998554432 3567778876655
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccc
Q psy1056 259 EIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKS 305 (590)
Q Consensus 259 ~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~ 305 (590)
+++++++++++.+|+++|.+++++++||+|++|+++|+||++|++++
T Consensus 72 ~~~~v~~~~~~~~a~~~m~~~~i~~lpVVd~~~~lvGiiT~~Di~k~ 118 (120)
T d1jr1a4 72 DLVVAPAGITLKEANEILQRSKKGKLPIVNENDELVAIIARTDLKKN 118 (120)
T ss_dssp TSCCEETTCCHHHHHHHTCSCC---CEEEETTTEEEEEECHHHHHHH
T ss_pred CceEECCCCCHHHHHHHHHHcCccEEEEEcCCCEEEEEEEHHHhhhc
Confidence 78999999999999999999999999999999999999999999986
|
| >d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein Ta0289 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.66 E-value=1e-16 Score=143.31 Aligned_cols=115 Identities=16% Similarity=0.328 Sum_probs=102.4
Q ss_pred cccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhh--cc-ccccccccchhh
Q psy1056 179 MQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVD--FL-ENSANMDLKIEK 252 (590)
Q Consensus 179 ~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~--~~-~~~~~~~~~V~~ 252 (590)
.++|+.++.+ ++++.+|++.| .+++++++||+++ +++++|++|.+|+. +. ........++++
T Consensus 6 ~dim~~~~~~v~~~~tl~~a~~~m---------~~~~~~~~~V~d~---~~~~~Giit~~di~~~~~~~~~~~~~~~v~~ 73 (142)
T d1pvma4 6 EKIMNSNFKTVNWNTTVFDAVKIM---------NENHLYGLVVKDD---NGNDVGLLSERSIIKRFIPRNKKPDEVPIRL 73 (142)
T ss_dssp GGTSBTTCCEEETTCBHHHHHHHH---------HHHTCCEEEEECT---TSCEEEEEEHHHHHHHTGGGCCCGGGSBGGG
T ss_pred HHhCCCCCcEECCcCcHHHHHHHH---------HHCCCceEeeecc---CCcccceEEeechhhhhhhhccccccccccc
Confidence 3588888777 99999999999 9999999999998 79999999999996 22 222334678999
Q ss_pred ccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccC
Q psy1056 253 VMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRD 307 (590)
Q Consensus 253 im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~ 307 (590)
+|++ +++++++++++.+|+++|.+++++++||+|++|+++|+||.+||++.+.
T Consensus 74 im~~--~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~l~Giit~~Dil~~l~ 126 (142)
T d1pvma4 74 VMRK--PIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLS 126 (142)
T ss_dssp TSBS--SCCEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTTSC
T ss_pred cccc--ccccccchhhHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHHHHh
Confidence 9998 9999999999999999999999999999999999999999999999654
|
| >d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein PH1780 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.63 E-value=3.4e-16 Score=141.95 Aligned_cols=115 Identities=23% Similarity=0.266 Sum_probs=100.8
Q ss_pred Ccccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhcccc------------
Q psy1056 178 DMQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLEN------------ 242 (590)
Q Consensus 178 ~~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~------------ 242 (590)
..++|++++.+ ++++.+|++.| .+++++++||+|+ +++++|++|..|+.....
T Consensus 6 v~~~m~r~v~~v~~~~~l~~a~~~m---------~~~~~~~lPVvd~---~~~lvG~it~~Dl~~~~~~~~~~~~~~~~~ 73 (156)
T d2yzqa1 6 IEPYYQRYVSIVWEGTPLKAALKAL---------LLSNSMALPVVDS---EGNLVGIVDETDLLRDSEIVRIMKSTELAA 73 (156)
T ss_dssp STTTSBSCCCCEETTSBHHHHHHHH---------HTCSSSEEEEECT---TSCEEEEEEGGGGGGCGGGCC---------
T ss_pred HHHHhcCCCeEECCcCcHHHHHHHH---------HHcCCCEEEEEeC---CCCceeEEeeeechhhhccccccccccccc
Confidence 34589988877 99999999999 9999999999998 799999999999951100
Q ss_pred --------------------ccccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccc
Q psy1056 243 --------------------SANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDL 302 (590)
Q Consensus 243 --------------------~~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dl 302 (590)
......+++++|++ +++++.+++++.++++.|.+++++++||+|++|+++|+||++||
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~--~~~tv~~~~~l~~~~~~m~~~~~~~lpVvd~~g~lvGivt~~Di 151 (156)
T d2yzqa1 74 SSEEEWILESHPTLLFEKFELQLPNKPVAEIMTR--DVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDL 151 (156)
T ss_dssp -----------------------CCCBGGGTCBS--SCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTTEEEEEEEHHHH
T ss_pred chhhhhhhhhhhhhhHHHhhhcccCCEeehhccc--CceEECcccccHHHHHHHHHcCeeEEEEEeCCCEEEEEEEHHHH
Confidence 01235689999999 99999999999999999999999999999999999999999999
Q ss_pred cccc
Q psy1056 303 KKSR 306 (590)
Q Consensus 303 l~~~ 306 (590)
++.+
T Consensus 152 l~~l 155 (156)
T d2yzqa1 152 LKVL 155 (156)
T ss_dssp GGGG
T ss_pred HHHh
Confidence 9864
|
| >d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein PH1780 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.63 E-value=1.1e-16 Score=139.40 Aligned_cols=109 Identities=14% Similarity=0.255 Sum_probs=81.3
Q ss_pred cccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhccccccccccchhhccccC
Q psy1056 181 VIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTNV 257 (590)
Q Consensus 181 im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~~ 257 (590)
+|+.++.+ ++++.+|++.| .+++++++||+|+ +|+++|+||.+|+..... ..++.++|.+
T Consensus 6 iM~~~~v~v~~~~~v~~a~~~m---------~~~~~~~~~Vvd~---~~~~~G~it~~dl~~~~~----~~~~~~~~~~- 68 (122)
T d2yzqa2 6 IMTQNPVTITLPATRNYALELF---------KKYKVRSFPVVNK---EGKLVGIISVKRILVNPD----EEQLAMLVKR- 68 (122)
T ss_dssp HSEESCCCEESSCC---------------------CCEEEEECT---TCCEEEEEESSCC--------------CCCBS-
T ss_pred ccCCCCEEECCcCcHHHHHHHH---------HHcCCcEEEEEec---cccchhhhhcchhhhhhc----ccchhhcccc-
Confidence 77776665 99999999999 9999999999998 799999999999985432 3679999999
Q ss_pred CCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccC
Q psy1056 258 NEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRD 307 (590)
Q Consensus 258 ~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~ 307 (590)
+++++++++++.+|+++|.+++++++||+|++|+++|+||.+|++++..
T Consensus 69 -~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~liGiit~~dil~~~~ 117 (122)
T d2yzqa2 69 -DVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYF 117 (122)
T ss_dssp -CCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTT
T ss_pred -ceeecchhhHHHHHHHHHHHcCcEEEEEEeCCCEEEEEEEHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998654
|
| >d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein ST2348 species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.62 E-value=1.7e-16 Score=139.14 Aligned_cols=112 Identities=20% Similarity=0.356 Sum_probs=100.5
Q ss_pred ccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhcc-ccccccccchhhccc
Q psy1056 180 QVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFL-ENSANMDLKIEKVMT 255 (590)
Q Consensus 180 ~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~-~~~~~~~~~V~~im~ 255 (590)
++|+.++.+ ++++.+|++.| .+++++++||+++ ++++|++|.+|+... ........++.++|.
T Consensus 8 d~m~~~~v~v~~~~tl~~a~~~m---------~~~~~~~~pV~d~----~~~~Givt~~dl~~~~~~~~~~~~~v~~~~~ 74 (127)
T d2ef7a1 8 EYMKTQVISVTKDAKLNDIAKVM---------TEKNIGSVIVVDG----NKPVGIITERDIVKAIGKGKSLETKAEEFMT 74 (127)
T ss_dssp GTSBCSCCEEETTCBHHHHHHHH---------HHHTCSEEEEEET----TEEEEEEEHHHHHHHHHTTCCTTCBGGGTSE
T ss_pred HhCCCCCeEECCcCcHHHHHHHH---------HHcCCceEEeecc----cchhhhcchhHHHHHHHhhccccchhhhhhh
Confidence 488888876 88999999999 9999999999986 899999999999832 222334688999999
Q ss_pred cCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccccc
Q psy1056 256 NVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSR 306 (590)
Q Consensus 256 ~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~ 306 (590)
+ +++++++++++.+|+++|.+++++++||+|++|+++|+||..||++++
T Consensus 75 ~--~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGiit~~Dll~~i 123 (127)
T d2ef7a1 75 A--SLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAI 123 (127)
T ss_dssp E--CCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHH
T ss_pred h--hccccccccchhHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHHHHH
Confidence 9 999999999999999999999999999999999999999999999864
|
| >d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein MTH1622 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.61 E-value=3e-16 Score=136.10 Aligned_cols=110 Identities=22% Similarity=0.259 Sum_probs=98.1
Q ss_pred ccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhh--ccccccccccchhhcc
Q psy1056 180 QVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVD--FLENSANMDLKIEKVM 254 (590)
Q Consensus 180 ~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~--~~~~~~~~~~~V~~im 254 (590)
++|+.++.+ ++|+.+|++.| .+++++.+||+++ ++++|++|.+|++ ..........+++++|
T Consensus 4 diM~~~~~~v~~~~sl~ea~~~~---------~~~~~~~~~V~~~----~~~~Gvit~~Di~~~l~~~~~~~~~~v~~~m 70 (120)
T d1pbja3 4 DVMVTDVDTIDITASLEDVLRNY---------VENAKGSSVVVKE----GVRVGIVTTWDVLEAIAEGDDLAEVKVWEVM 70 (120)
T ss_dssp HHCBCSCCEEETTCBHHHHHHHH---------HHHCCCEEEEEET----TEEEEEEEHHHHHHHHHHTCCTTTSBHHHHC
T ss_pred HhCCCCCeEECCcCcHHHHHHHH---------HHcCceEEEEEeC----CcEEEEEEeeeccccccccccccceeEeeec
Confidence 488888766 99999999999 9999999999986 8999999999998 2333334467999999
Q ss_pred ccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccc
Q psy1056 255 TNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKS 305 (590)
Q Consensus 255 ~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~ 305 (590)
++ +++++++++++.+|+++|.+++++++||++ +|+++|++|.+|++++
T Consensus 71 ~~--~~~~v~~~~~l~~a~~~m~~~~~~~l~V~~-~~~l~Givt~~Dil~A 118 (120)
T d1pbja3 71 ER--DLVTISPRATIKEAAEKMVKNVVWRLLVEE-DDEIIGVISATDILRA 118 (120)
T ss_dssp BC--GGGEECTTSCHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHH
T ss_pred cc--ccccccchhHHHHHHHHHHHcCCeEEEEEE-CCEEEEEEEHHHHHhc
Confidence 99 999999999999999999999999999986 6899999999999986
|
| >d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Magnesium transporter MgtE species: Enterococcus faecalis [TaxId: 1351]
Probab=99.61 E-value=3.1e-16 Score=137.43 Aligned_cols=109 Identities=14% Similarity=0.259 Sum_probs=98.0
Q ss_pred ccccccccc---hHHHHHHHHHhcccccccccccc-----CceeeEEeeCCCCCCeEEEEEecchhhccccccccccchh
Q psy1056 180 QVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCH-----GFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIE 251 (590)
Q Consensus 180 ~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~-----~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~~~~~~~~V~ 251 (590)
.+|+.++.+ +.|+.+|++.| +++ .+..+||+|+ +++++|+++.+|+..... ..+|.
T Consensus 5 ~iM~~d~i~v~~~~tv~ea~~~m---------~~~~~~~~~~~~~~Vvd~---~~~l~G~v~~~~l~~~~~----~~~v~ 68 (127)
T d2ouxa2 5 AIMTTEFVSIVANQTVRSAMYVL---------KNQADMAETIYYVYVVDQ---ENHLVGVISLRDLIVNDD----DTLIA 68 (127)
T ss_dssp HHCBSCCCEECSSSBHHHHHHHH---------HHHCSSCSCCSEEEEECT---TCBEEEEEEHHHHTTSCT----TSBHH
T ss_pred HhCCCCcEEECCCCcHHHHHHHh---------HhhcccccceeeeEEEec---CCeEEEEEEeeccccccc----cEEhh
Confidence 478888877 99999999999 665 4689999998 799999999999975533 47899
Q ss_pred hccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccccc
Q psy1056 252 KVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSR 306 (590)
Q Consensus 252 ~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~ 306 (590)
++|++ +++++++++++.+|+++|.+++++++||+|++|+++|+||..|+++..
T Consensus 69 ~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lPVVD~~g~lvGiIt~~Dil~~i 121 (127)
T d2ouxa2 69 DILNE--RVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVI 121 (127)
T ss_dssp HHSBS--CCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHH
T ss_pred hhccC--CCccCCCCCCHHHHHHHHHHhCCEEEEEEeCCCEEEEEEEHHHHHHHH
Confidence 99999 999999999999999999999999999999999999999999998753
|
| >d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein PH0107 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.61 E-value=3.8e-16 Score=137.77 Aligned_cols=118 Identities=14% Similarity=0.235 Sum_probs=103.8
Q ss_pred CCCcccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhh--ccccccccccch
Q psy1056 176 YPDMQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVD--FLENSANMDLKI 250 (590)
Q Consensus 176 ~~~~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~--~~~~~~~~~~~V 250 (590)
.|..++|+.++.+ ++++.+|++.| .+++++.+||+|+ +++++|++|.+|+. ..........++
T Consensus 5 ~pV~~im~~~~~~v~~~~t~~~a~~~m---------~~~~~~~~~Vvd~---~~~~~Giit~~di~~~~~~~~~~~~~~v 72 (132)
T d2yzia1 5 APIKVYMTKKLLGVKPSTSVQEASRLM---------MEFDVGSLVVIND---DGNVVGFFTKSDIIRRVIVPGLPYDIPV 72 (132)
T ss_dssp SBGGGTCBCCCCEECTTSBHHHHHHHH---------HHHTCSEEEEECT---TSCEEEEEEHHHHHHHTTTTCCCTTSBG
T ss_pred CcHHHHcCCCCeEECCcCcHHHHHHHH---------HHcCCcEEEEecc---cceeeeeeeHHHHHHHHhhccCccceeE
Confidence 4566799888877 99999999999 9999999999998 78999999999997 223333356899
Q ss_pred hhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCC
Q psy1056 251 EKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDY 308 (590)
Q Consensus 251 ~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~ 308 (590)
+++|.+ +++++++++++.+++++|.+++++++||++ +|+++|+||.+|++++...
T Consensus 73 ~~im~~--~~~~v~~~~~~~~~~~~m~~~~~~~l~V~~-~~~~vGivt~~Dil~a~~~ 127 (132)
T d2yzia1 73 ERIMTR--NLITANVNTPLGEVLRKMAEHRIKHILIEE-EGKIVGIFTLSDLLEASRR 127 (132)
T ss_dssp GGTCBC--SCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHC
T ss_pred eecccc--cccccCcchHHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHH
Confidence 999999 999999999999999999999999999865 6999999999999987654
|
| >d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein VC0737 species: Vibrio cholerae [TaxId: 666]
Probab=99.61 E-value=3.6e-16 Score=139.19 Aligned_cols=114 Identities=23% Similarity=0.343 Sum_probs=98.7
Q ss_pred cccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhccc----------cccc
Q psy1056 179 MQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLE----------NSAN 245 (590)
Q Consensus 179 ~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~----------~~~~ 245 (590)
.++|+.++.+ ++++.+|++.| .+++++++||+|+ +++++|++|.+|+.... ....
T Consensus 5 ~diM~~~~~~v~~~~tl~~a~~~m---------~~~~~~~lpVvd~---~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~ 72 (139)
T d2o16a3 5 EDMMTRHPHTLLRTHTLNDAKHLM---------EALDIRHVPIVDA---NKKLLGIVSQRDLLAAQESSLQRSAQGDSLA 72 (139)
T ss_dssp GGTSEESCCCBCTTSBHHHHHHHH---------HHHTCSEEEEECT---TCBEEEEEEHHHHHHHHHHHCC---------
T ss_pred HHhCcCCCeEECCcCCHHHHHHHH---------HHcCCCeeeeecc---cccccccccHHHHHHHHHhhhhhhhcccccc
Confidence 3588777766 99999999999 9999999999998 79999999999997111 0112
Q ss_pred cccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccC
Q psy1056 246 MDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRD 307 (590)
Q Consensus 246 ~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~ 307 (590)
...+++++|++ +++++++++++.+|+++|.+++++++||+| +|+++|+||++|+++...
T Consensus 73 ~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~lvGiit~~Dil~~~~ 131 (139)
T d2o16a3 73 FETPLFEVMHT--DVTSVAPQAGLKESAIYMQKHKIGCLPVVA-KDVLVGIITDSDFVTIAI 131 (139)
T ss_dssp CCCBHHHHSCS--CEEEBCTTSBHHHHHHHHHHTTCSCEEEEE-TTEEEEEECHHHHHHHHH
T ss_pred cccchhHhhcc--ccccccccchHHHHHHHHHHcCceEEEEEE-CCEEEEEEEHHHHHHHHH
Confidence 35789999999 999999999999999999999999999998 489999999999998643
|
| >d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Magnesium transporter MgtE species: Thermus thermophilus [TaxId: 274]
Probab=99.60 E-value=1.8e-16 Score=142.02 Aligned_cols=111 Identities=13% Similarity=0.242 Sum_probs=100.1
Q ss_pred Ccccccccccc---hHHHHHHHHHhccccccccccccC-----ceeeEEeeCCCCCCeEEEEEecchhhccccccccccc
Q psy1056 178 DMQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHG-----FCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLK 249 (590)
Q Consensus 178 ~~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~-----~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~~~~~~~~ 249 (590)
++.+|++++.+ ++|+.+|++.| ++++ +..+||+|+ +++++|+++.+|+.... ...+
T Consensus 3 aG~iM~~~~itv~~~~tv~ea~~~m---------~~~~~~~~~~~~~~Vvd~---~~~l~G~v~~~dl~~~~----~~~~ 66 (144)
T d2yvxa2 3 AGGLMTPEYVAVREGMTVEEVLRFL---------RRAAPDAETIYYIYVVDE---KGRLKGVLSLRDLIVAD----PRTR 66 (144)
T ss_dssp SGGGCBSCCCEECSSCBHHHHHHHS---------SSSCTTSSCSSBCEEBCT---TCBBCCBCBHHHHTTSC----TTCB
T ss_pred cccccCCCCEEECCCCcHHHHHHHH---------HHhcccccceeeeEEecC---CCCEecccchhhhhhcc----cccc
Confidence 34589998887 99999999999 7774 778999998 79999999999997543 2478
Q ss_pred hhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccccc
Q psy1056 250 IEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSR 306 (590)
Q Consensus 250 V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~ 306 (590)
+.++|++ +++++++++++.+|+++|.+++++++||||++|+++|+||.+|+++..
T Consensus 67 v~~im~~--~~~~v~~~~~~~~a~~~m~~~~~~~lPVVd~~g~lvGiIt~~Dil~~l 121 (144)
T d2yvxa2 67 VAEIMNP--KVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVL 121 (144)
T ss_dssp STTTSBS--SCCCEESSCCHHHHHHHHHHSCCSEEEEECSSCBEEEEEEHHHHHHHH
T ss_pred hHHhccc--CCccCCCCChHHHHHHHHHHcCCCEEEEEeECCEEEEEEEHHHHHHHH
Confidence 9999999 999999999999999999999999999999999999999999999864
|
| >d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein TM0892, CBS tandem species: Thermotoga maritima [TaxId: 2336]
Probab=99.60 E-value=5.3e-16 Score=134.69 Aligned_cols=110 Identities=10% Similarity=0.113 Sum_probs=100.1
Q ss_pred ccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhccccccccccchhhcccc
Q psy1056 180 QVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMTN 256 (590)
Q Consensus 180 ~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~~~~~~~~V~~im~~ 256 (590)
++|.+++.+ ++++++|++.| .+++++.+||+++ +++++|++|.+|++... ...++.++|+.
T Consensus 5 ~~m~~~~~~v~~~~tv~ea~~~m---------~~~~~~~v~Vvd~---~~~~~Gii~~~dl~~~~----~~~~v~~~~~~ 68 (121)
T d1vr9a3 5 KWVTQDFPMVEESATVRECLHRM---------RQYQTNECIVKDR---EGHFRGVVNKEDLLDLD----LDSSVFNKVSL 68 (121)
T ss_dssp GGCBSCSCEEETTCBHHHHHHHH---------HHTTSSEEEEECT---TSBEEEEEEGGGGTTSC----TTSBSGGGCBC
T ss_pred hhhcCCCeEECCCCCHHHHHHhh---------hhcCcEEEEEEeC---CceeEEEeehhhhhhhh----ccccccccccC
Confidence 477777766 99999999999 9999999999998 79999999999998442 24789999998
Q ss_pred CCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccC
Q psy1056 257 VNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRD 307 (590)
Q Consensus 257 ~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~ 307 (590)
+++++++++++.+++++|.+++...+||+|++|+++|+||..|++++..
T Consensus 69 --~~~~v~~~~~l~~~~~~~~~~~~~~lpVvde~g~~~Gvit~~dil~~l~ 117 (121)
T d1vr9a3 69 --PDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALI 117 (121)
T ss_dssp --TTCCEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred --ccEEECCCCCHHHHHHHHHhcCceeeeeECCCCeEEEEEEHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998754
|
| >d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein NE2398 species: Nitrosomonas europaea [TaxId: 915]
Probab=99.60 E-value=3.7e-16 Score=136.90 Aligned_cols=102 Identities=25% Similarity=0.409 Sum_probs=92.1
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhc---cccccccccchhhccccCCCeeEEcC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDF---LENSANMDLKIEKVMTNVNEIISAQA 265 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~---~~~~~~~~~~V~~im~~~~~~~tv~~ 265 (590)
++++.+|++.| .+++++++||+++ ++++|++|.+|+.. .........+++++|++ +++++.+
T Consensus 21 ~~tl~~a~~~m---------~~~~~~~vpV~~~----~~~vGiit~~Di~~~~~~~~~~~~~~~v~~im~~--~~~~v~~ 85 (127)
T d2rc3a1 21 DDSVFNAMQKM---------AADNIGALLVMKD----EKLVGILTERDFSRKSYLLDKPVKDTQVKEIMTR--QVAYVDL 85 (127)
T ss_dssp TSBHHHHHHHH---------HHHTCSEEEEEET----TEEEEEEEHHHHHHHGGGSSSCGGGSBGGGTSBC--SCCCBCT
T ss_pred cCcHHHHHHHH---------HHcCCCEEEEEEC----CeEEEEEEccchhhhhhhhcccccceeEeeeccc--eeEEecc
Confidence 89999999999 9999999999986 89999999999962 23333456889999999 9999999
Q ss_pred CCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccccc
Q psy1056 266 GISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSR 306 (590)
Q Consensus 266 ~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~ 306 (590)
++++.+|+++|.+++++++||+| +|+++|+||.+|++++.
T Consensus 86 ~~~l~~a~~~m~~~~~~~lpVvd-~~~~~GiIt~~Dil~~~ 125 (127)
T d2rc3a1 86 NNTNEDCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDA 125 (127)
T ss_dssp TCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHH
T ss_pred CccHHHHHHHHHHCCCcEEEEEE-CCEEEEEEEHHHHHHHH
Confidence 99999999999999999999998 69999999999999863
|
| >d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein SSO3205 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.58 E-value=3.8e-16 Score=139.14 Aligned_cols=118 Identities=20% Similarity=0.261 Sum_probs=102.8
Q ss_pred CCCcccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhcc-c-c------cc
Q psy1056 176 YPDMQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFL-E-N------SA 244 (590)
Q Consensus 176 ~~~~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~-~-~------~~ 244 (590)
+|..++|+.++.+ ++++.+|++.| .+++++++||+++ +++++|++|.+|+... . . ..
T Consensus 2 ~~V~~iMt~~v~~v~~~~tl~~a~~~m---------~~~~~~~ipVv~~---~~~~~g~i~~~di~~~~~~~~~~~~~~~ 69 (141)
T d3ddja1 2 FPVKVFMSTKVQTIYKEVRLDQAVKLM---------LRRGFRRLPVIDD---DNKVVGIVTVVNAIKQLAKAVDKLDPDY 69 (141)
T ss_dssp CBHHHHSBCSCCCEETTSBHHHHHHHH---------HHHTCSEEEEECT---TSCEEEEEEHHHHHHHHHHHHHHTCTHH
T ss_pred EeeHHhCcCCCeEEcCcCcHHHHHHHH---------HHcCCCeeecccc---cCccccccccccchhhhhcccccccccc
Confidence 3445689888777 99999999999 9999999999998 7999999999999721 1 0 11
Q ss_pred ccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccC
Q psy1056 245 NMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRD 307 (590)
Q Consensus 245 ~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~ 307 (590)
....+++++|++ +++++.+++++.+++++|.+++++++||+|++|+++|+||.+|+++.+.
T Consensus 70 ~~~~~v~~im~~--~~~~v~~~~~~~~~~~~m~~~~~~~l~Vvd~~~~~iGiIt~~Dil~~l~ 130 (141)
T d3ddja1 70 FYGKVVKDVMVT--NLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALH 130 (141)
T ss_dssp HHTCBHHHHSBC--CCCBCCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred ccCCCHHHHhCc--ccccccccchhhHHHHHHHHcCCCEEEEEccCCEEEEEEEHHHHHHHHH
Confidence 235789999998 9999999999999999999999999999999999999999999998653
|
| >d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein YkuL species: Bacillus subtilis [TaxId: 1423]
Probab=99.55 E-value=1.7e-15 Score=133.38 Aligned_cols=108 Identities=13% Similarity=0.165 Sum_probs=93.0
Q ss_pred cccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhh--ccc-----cccccccchhh
Q psy1056 183 GGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVD--FLE-----NSANMDLKIEK 252 (590)
Q Consensus 183 ~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~--~~~-----~~~~~~~~V~~ 252 (590)
.+.+.. ++++.+|++.| .+++++++||+|+ +++++|++|.+|+. +.. .......++++
T Consensus 11 ~~~v~~v~~~~tl~~a~~~m---------~~~~~s~~pVvd~---~~~~vGiit~~di~~~~~~~~~~~~~~~~~~~v~~ 78 (132)
T d1yava3 11 ADKVAHVQVGNNLEHALLVL---------TKTGYTAIPVLDP---SYRLHGLIGTNMIMNSIFGLERIEFEKLDQITVEE 78 (132)
T ss_dssp GGGSCCEETTCBHHHHHHHH---------HHHCCSEEEEECT---TCBEEEEEEHHHHHHHHBCSSSBCGGGTTTSBHHH
T ss_pred ccceEEEcCCCCHHHHHHHH---------HhhCCCceEEeec---ccccccEEEcchhHHHhhccccccccccccccccc
Confidence 444444 99999999999 9999999999998 79999999999997 111 11224578999
Q ss_pred ccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccccc
Q psy1056 253 VMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSR 306 (590)
Q Consensus 253 im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~ 306 (590)
+|++ +++++++++++.+++++|.+++ .+||+|++|+++|+||.+|+++.+
T Consensus 79 ~m~~--~~~~v~~~~~l~~~~~~~~~~~--~l~Vvd~~~~~~Givt~~dil~~l 128 (132)
T d1yava3 79 VMLT--DIPRLHINDPIMKGFGMVINNG--FVCVENDEQVFEGIFTRRVVLKEL 128 (132)
T ss_dssp HSBC--SCCEEETTSBHHHHHHHTTTCS--EEEEECTTCBEEEEEEHHHHHHHH
T ss_pred cccc--cccccccchhHHHHHHHHHhCC--EEEEEccCCEEEEEEEHHHHHHHH
Confidence 9999 9999999999999999998765 599999999999999999999874
|
| >d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein SSO3205 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.53 E-value=8.3e-15 Score=129.30 Aligned_cols=112 Identities=16% Similarity=0.135 Sum_probs=97.3
Q ss_pred ccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhccc-c-----------cc
Q psy1056 180 QVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLE-N-----------SA 244 (590)
Q Consensus 180 ~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~-~-----------~~ 244 (590)
++|.+++.+ ++++.+|++.| .+++++++||+| ++++|++|..|+.... . ..
T Consensus 5 ~lM~~~~~~v~~~~tl~~a~~~m---------~~~~~~~l~V~d-----~~lvg~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (135)
T d3ddja2 5 TLMIKNPPILSKEDRLGSAFKKI---------NEGGIGRIIVAN-----EKIEGLLTTRDLLSTVESYCKDSCSQGDLYH 70 (135)
T ss_dssp GTCEESCCEECTTSBHHHHHHHT---------TGGGCCEEEEES-----SSEEEEEEHHHHHGGGTTCC---CCHHHHHH
T ss_pred EEeeCCCeEECCCCcHHHHHHHH---------HHhCCeEEEEEe-----cceeceeeccchhhhhccccccchhhhhccc
Confidence 477665555 99999999999 999999999986 4699999999987221 1 11
Q ss_pred ccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccC
Q psy1056 245 NMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRD 307 (590)
Q Consensus 245 ~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~ 307 (590)
....+++++|++ +++++++++++.+|+++|.+++++++||+|++|+++|+||.+|+++...
T Consensus 71 ~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiit~~Dil~~~~ 131 (135)
T d3ddja2 71 ISTTPIIDYMTP--NPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYK 131 (135)
T ss_dssp HHTSBGGGTSEE--SCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHGGGGG
T ss_pred cccCCHHHHhCC--ccceEEeccccchhhhhhhhcceeEEEEEeCCCEEEEEEEHHHHHHHHH
Confidence 236789999999 9999999999999999999999999999999999999999999999764
|
| >d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Type II inosine monophosphate dehydrogenase CBS domains species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.53 E-value=4.4e-16 Score=135.04 Aligned_cols=53 Identities=49% Similarity=1.135 Sum_probs=19.6
Q ss_pred ccccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEecccccc
Q psy1056 24 GFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDF 76 (590)
Q Consensus 24 ~m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Did~ 76 (590)
+|+++|+|++|++|+.||+++|.+++++++||+|++...++++|++|.+|+++
T Consensus 1 gm~~~pvtv~~~~tl~da~~~m~~~~i~~~pVvd~~~~~~~lvGivT~~Di~~ 53 (120)
T d1jr1a4 1 GFITDPVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDF 53 (120)
T ss_dssp SEECTTCC----CCCC--CCBC---------------CTTCCC----------
T ss_pred CcccCCEEECCcCCHHHHHHHHHHhCCCeEEEeeccccCCeEeeeeeeeeeee
Confidence 58999999999999999999999999999999986333479999999996543
|
| >d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein PAE2072 species: Pyrobaculum aerophilum [TaxId: 13773]
Probab=99.52 E-value=4.4e-15 Score=130.44 Aligned_cols=116 Identities=14% Similarity=0.092 Sum_probs=95.0
Q ss_pred cccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhccccccccccchhhccc
Q psy1056 179 MQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKVMT 255 (590)
Q Consensus 179 ~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~~~~~~~~V~~im~ 255 (590)
.++|++++.+ ++++.+|++.| .+++++++||++.+ .+++++|++|..|+................|.
T Consensus 4 ~dim~~~~v~v~~~~tl~ea~~~m---------~~~~~~~~~Vv~~d-~~~~~iGi~~~~dl~~~~~~~~~~~~~~~~~~ 73 (131)
T d2riha1 4 SELLKRPPVSLPETATIREVATEL---------AKNRVGLAVLTARD-NPKRPVAVVSERDILRAVAQRLDLDGPAMPIA 73 (131)
T ss_dssp GGGCCSCCEEEETTCBHHHHHHHH---------HHHTCSEEEEEETT-EEEEEEEEEEHHHHHHHHHTTCCTTSBSGGGC
T ss_pred HHhccCCCEEECCCCcHHHHHHHH---------HHhCCCcEEEEEEc-CCCEEEEEEeeecccccccccccccccccccc
Confidence 3588887766 99999999999 99999999999430 04789999999999833211112233445555
Q ss_pred cCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccccc
Q psy1056 256 NVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSR 306 (590)
Q Consensus 256 ~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~ 306 (590)
+ +++++.+++++.+|+++|.+++++++||+|++|+++|+||..||+++.
T Consensus 74 ~--~~~~v~~~~~~~~a~~~m~~~~i~~lpVvd~~g~l~Giit~~Dll~~~ 122 (131)
T d2riha1 74 N--SPITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFER 122 (131)
T ss_dssp B--CCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSCH
T ss_pred c--cceeEeeecchHHHHHHHHHCCeEEEEEEcCCCeEEEEEEHHHHHHHH
Confidence 5 888999999999999999999999999999999999999999999864
|
| >d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein PH1780 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.52 E-value=1e-14 Score=132.00 Aligned_cols=143 Identities=15% Similarity=0.149 Sum_probs=93.4
Q ss_pred cCccccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccccccccCCCCCCCCccCCccccccccccc
Q psy1056 22 KHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKDLSSPLTKKITL 101 (590)
Q Consensus 22 ~~~m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Did~l~~~~~~~~~~~~~~~~~l~~~~~~ 101 (590)
+++|.++++++.+++|+.+|+++|.+++++++||+|++ |+++|++|..|+-....+.. .. .........
T Consensus 7 ~~~m~r~v~~v~~~~~l~~a~~~m~~~~~~~lPVvd~~---~~lvG~it~~Dl~~~~~~~~--~~----~~~~~~~~~-- 75 (156)
T d2yzqa1 7 EPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSE---GNLVGIVDETDLLRDSEIVR--IM----KSTELAASS-- 75 (156)
T ss_dssp TTTSBSCCCCEETTSBHHHHHHHHHTCSSSEEEEECTT---SCEEEEEEGGGGGGCGGGCC-------------------
T ss_pred HHHhcCCCeEECCcCcHHHHHHHHHHcCCCEEEEEeCC---CCceeEEeeeechhhhcccc--cc----cccccccch--
Confidence 45699999999999999999999999999999999887 89999999995321111100 00 000000000
Q ss_pred CCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHHcCCcEEEEcCCCCchHHHHHHHHHhhhcCCCccc
Q psy1056 102 AAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQV 181 (590)
Q Consensus 102 ~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~i 181 (590)
..... .. ... ............. .+..++
T Consensus 76 ~~~~~-------~~-------~~~------------------------------------~~~~~~~~~~~~~-~~v~~~ 104 (156)
T d2yzqa1 76 EEEWI-------LE-------SHP------------------------------------TLLFEKFELQLPN-KPVAEI 104 (156)
T ss_dssp -----------------------------------------------------------------------CC-CBGGGT
T ss_pred hhhhh-------hh-------hhh------------------------------------hhhHHHhhhcccC-CEeehh
Confidence 00000 00 000 0000000011111 445568
Q ss_pred ccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhh
Q psy1056 182 IGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVD 238 (590)
Q Consensus 182 m~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~ 238 (590)
|+.++.+ ++++.++++.| .+++++++||+|+ +|+++||+|.+|+.
T Consensus 105 m~~~~~tv~~~~~l~~~~~~m---------~~~~~~~lpVvd~---~g~lvGivt~~Dil 152 (156)
T d2yzqa1 105 MTRDVIVATPHMTVHEVALKM---------AKYSIEQLPVIRG---EGDLIGLIRDFDLL 152 (156)
T ss_dssp CBSSCCCBCTTSBHHHHHHHH---------HHHTCSEEEEEET---TTEEEEEEEHHHHG
T ss_pred cccCceEECcccccHHHHHHH---------HHcCeeEEEEEeC---CCEEEEEEEHHHHH
Confidence 8887766 99999999999 9999999999998 79999999999986
|
| >d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Type II inosine monophosphate dehydrogenase CBS domains species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.52 E-value=9.9e-15 Score=127.42 Aligned_cols=51 Identities=29% Similarity=0.593 Sum_probs=45.2
Q ss_pred CccccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEecccc
Q psy1056 23 HGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74 (590)
Q Consensus 23 ~~m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Di 74 (590)
.+|+.+|+|++|++|+.+|+++|.+++++++||+|+. ..++++|++|.+|+
T Consensus 1 ~gmi~dpvtv~~~~tv~~a~~~m~~~~~~~~pVvD~~-~~~~lvGivt~~Di 51 (126)
T d1zfja4 1 NGVIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETL-ANRKLVGIITNRDM 51 (126)
T ss_dssp TTTSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCT-TTCBEEEEEEHHHH
T ss_pred CCCEeCceEECCCCCHHHHHHHHHHhCCCcEEEEeec-cCCeEEEEeEHHHH
Confidence 3699999999999999999999999999999999961 01799999999953
|
| >d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein TM0935 species: Thermotoga maritima [TaxId: 2336]
Probab=99.50 E-value=9.8e-15 Score=130.41 Aligned_cols=112 Identities=13% Similarity=0.179 Sum_probs=96.2
Q ss_pred cccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhcccc---------------
Q psy1056 181 VIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLEN--------------- 242 (590)
Q Consensus 181 im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~--------------- 242 (590)
+|+.++++ ++++.+|++.| .+++++++||+|+ +++++|++|.+|+.....
T Consensus 9 ~m~~~p~~v~~~~~v~~a~~~m---------~~~~~~~ipVvd~---~~~~vGiis~~Dl~~~~~~~~~~~~~~~~~~~~ 76 (145)
T d1o50a3 9 LISLKPTVVEEDTPIEEIVDRI---------LEDPVTRTVYVAR---DNKLVGMIPVMHLLKVSGFHFFGFIPKEELIRS 76 (145)
T ss_dssp SSCCCCEEECTTCBHHHHHHHH---------HHSTTCCEEEEEE---TTEEEEEEEHHHHHHHHHHHHHCCCC-------
T ss_pred hCCCCCEEECCcCcHHHHHHHH---------HHcCCceEEEecc---CcceeeeeccchhhhhhhcccccccchhHHHHh
Confidence 67766655 99999999999 9999999999998 799999999999962100
Q ss_pred --ccccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccC
Q psy1056 243 --SANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRD 307 (590)
Q Consensus 243 --~~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~ 307 (590)
......+++++|. +++++++++++.+|+++|.+++++++||+|++|+++|+||.+|+++.+.
T Consensus 77 ~~~~~~~~~~~~~~~---~~~~i~~~~~l~~a~~~m~~~~i~~lpVVd~~g~i~Gvit~~dil~~l~ 140 (145)
T d1o50a3 77 SMKRLIAKNASEIML---DPVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALW 140 (145)
T ss_dssp CCCCCSSCBHHHHCB---CCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred hhhhccccCHHHHcC---CCEEEcCCCCHHHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHHHHHH
Confidence 1123466888886 6789999999999999999999999999999999999999999998754
|
| >d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein C1556.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=99.48 E-value=3.2e-14 Score=128.43 Aligned_cols=108 Identities=17% Similarity=0.276 Sum_probs=92.9
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhcc-c--cccccccchhhcccc----CCCee
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFL-E--NSANMDLKIEKVMTN----VNEII 261 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~-~--~~~~~~~~V~~im~~----~~~~~ 261 (590)
++++.+|++.| .+++++++||+|+ +++++|++|.+|+... . .......++.++|+. ..+++
T Consensus 20 ~~~v~~a~~~m---------~~~~~~~lpVvd~---~~~~vG~it~~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 87 (153)
T d2ooxe2 20 ETKVYDVIKML---------AEKNISAVPIVNS---EGTLLNVYESVDVMHLIQDGDYSNLDLSVGEALLKRPANFDGVH 87 (153)
T ss_dssp TSBHHHHHHHH---------HHTTCSEEEEECG---GGBEEEEEEHHHHHHHHGGGCGGGGGSBHHHHHHTSCCCSSCCC
T ss_pred cCcHHHHHHHH---------HHcCcceEeeecc---cceEEEEEEeeeeeehhccccccccccchhhheeeeecccCCCe
Confidence 99999999999 9999999999998 7999999999999722 1 122245678877753 12667
Q ss_pred EEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCC
Q psy1056 262 SAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDY 308 (590)
Q Consensus 262 tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~ 308 (590)
++++++++.++++.|.+++++++||+|++|+++|+||++|++++...
T Consensus 88 ~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGivT~~Dil~~~~~ 134 (153)
T d2ooxe2 88 TCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYIIY 134 (153)
T ss_dssp EECTTCBHHHHHHHHHHSCCSEEEEECTTCBEEEEEEHHHHHHHHHS
T ss_pred EECCCCcHHHHHHhhhhceeeEEEEEcCCCEEEEEEEHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999998654
|
| >d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Nuclear protein SNF4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.47 E-value=1.7e-14 Score=128.18 Aligned_cols=112 Identities=13% Similarity=0.211 Sum_probs=88.9
Q ss_pred cccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhc-cccc--cccccchh---
Q psy1056 181 VIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDF-LENS--ANMDLKIE--- 251 (590)
Q Consensus 181 im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~-~~~~--~~~~~~V~--- 251 (590)
++..++.+ ++++.+|++.| .+++++++||+|+ +++++|++|.+|+.. .... ......+.
T Consensus 14 ~~~~~v~tv~~~~~v~~a~~~m---------~~~~~~~ipVvd~---~~~~vG~it~~Di~~~~~~~~~~~~~~~~~~~~ 81 (140)
T d2nyca1 14 ITQDNMKSCQMTTPVIDVIQML---------TQGRVSSVPIIDE---NGYLINVYEAYDVLGLIKGGIYNDLSLSVGEAL 81 (140)
T ss_dssp CBCSSCCCBCTTSBHHHHHHHH---------HHHTCSEEEEECT---TCBEEEEEEHHHHHHHHHTC----CCSBHHHHH
T ss_pred ccCCCCEEEcCcCcHHHHHHHH---------HHcCCcEEEEEec---CCeEcceehhhHHHHHHhhccccccccchhhhh
Confidence 56666666 89999999999 9999999999998 789999999999972 2111 11122233
Q ss_pred ---hccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeeccccccc
Q psy1056 252 ---KVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSR 306 (590)
Q Consensus 252 ---~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~ 306 (590)
..|.. +++++++++++.+++++|.+++++++||+|++|+++|+||.+|++++.
T Consensus 82 ~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~VVd~~~~l~GiIt~~Dii~~l 137 (140)
T d2nyca1 82 MRRSDDFE--GVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYI 137 (140)
T ss_dssp HHCC--------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHH
T ss_pred hhhhhccc--ccEEECCCCcHHHHHHHHHhcCeeEEEEEeCCCeEEEEEEHHHHHHHH
Confidence 33444 788999999999999999999999999999999999999999998864
|
| >d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.46 E-value=5.7e-14 Score=125.42 Aligned_cols=105 Identities=13% Similarity=0.176 Sum_probs=89.5
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhc-cccc--cccccchh------hccccCCC
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDF-LENS--ANMDLKIE------KVMTNVNE 259 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~-~~~~--~~~~~~V~------~im~~~~~ 259 (590)
++++.+|++.| .+++++++||+++ +++++|++|..|+.. .... .....++. ..|.+ +
T Consensus 28 ~~tv~eal~~m---------~~~~~~~lpVvd~---~~~~~Gvit~~di~~~l~~~~~~~~~~~v~~~~~~~~~~~~--~ 93 (145)
T d2v8qe1 28 TTPVYVALGIF---------VQHRVSALPVVDE---KGRVVDIYSKFDVINLAAEKTYNNLDVSVTKALQHRSHYFE--G 93 (145)
T ss_dssp TCBHHHHHHHH---------HHHCCSEEEEECT---TSBEEEEEEGGGTGGGGGSSCCCCCSSBHHHHGGGCCSCCC--S
T ss_pred cCcHHHHHHHH---------HHcCCCccccccc---CCceEEEEEcchhhhhhhcccccchhhhhhhccchhhhccC--C
Confidence 88999999999 9999999999998 799999999999972 2211 11233333 44566 8
Q ss_pred eeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccC
Q psy1056 260 IISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRD 307 (590)
Q Consensus 260 ~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~ 307 (590)
++++.+++++.+++++|.+++++++||+|++|+++|+||.+||++++-
T Consensus 94 ~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~GiVt~~dii~~lv 141 (145)
T d2v8qe1 94 VLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQALV 141 (145)
T ss_dssp CCEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred CeEECCCCcHHHHHHHHHHcCceEEEEEccCCEEEEEEEHHHHHHHHH
Confidence 899999999999999999999999999999999999999999998754
|
| >d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein PH1780 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.43 E-value=3.2e-14 Score=123.38 Aligned_cols=109 Identities=24% Similarity=0.330 Sum_probs=75.6
Q ss_pred hhhcccCccccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccccccccCCCCCCCCccCCcccccc
Q psy1056 17 KVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKDLSSPLT 96 (590)
Q Consensus 17 ~vk~~~~~m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Did~l~~~~~~~~~~~~~~~~~l~ 96 (590)
+|+++ |+++++++++++|+.+|+++|.+++++++||+|++ |+++|++|.+ |++..+.. +.
T Consensus 2 ~v~di---M~~~~v~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~---~~~~G~it~~--dl~~~~~~----------~~-- 61 (122)
T d2yzqa2 2 RVKTI---MTQNPVTITLPATRNYALELFKKYKVRSFPVVNKE---GKLVGIISVK--RILVNPDE----------EQ-- 61 (122)
T ss_dssp BHHHH---SEESCCCEESSCC------------CCEEEEECTT---CCEEEEEESS--CC--------------------
T ss_pred Ccccc---cCCCCEEECCcCcHHHHHHHHHHcCCcEEEEEecc---ccchhhhhcc--hhhhhhcc----------cc--
Confidence 56666 99999999999999999999999999999999987 8999999999 55421000 00
Q ss_pred cccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHHcCCcEEEEcCCCCchHHHHHHHHHhhhcC
Q psy1056 97 KKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEY 176 (590)
Q Consensus 97 ~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~~~~dvv~~~~~~~~~~~~~~~v~~vk~~~ 176 (590)
+
T Consensus 62 ---------------------------------------------------------------------------~---- 62 (122)
T d2yzqa2 62 ---------------------------------------------------------------------------L---- 62 (122)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------------------------------------------------------------------------h----
Confidence 0
Q ss_pred CCcccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhh
Q psy1056 177 PDMQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVD 238 (590)
Q Consensus 177 ~~~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~ 238 (590)
.++|..++.+ ++++.++++.| .++++.++||+|+ +|+++|+||.+|+.
T Consensus 63 --~~~~~~~~~~v~~~~~l~~~~~~~---------~~~~~~~lpVvd~---~~~liGiit~~dil 113 (122)
T d2yzqa2 63 --AMLVKRDVPVVKENDTLKKAAKLM---------LEYDYRRVVVVDS---KGKPVGILTVGDII 113 (122)
T ss_dssp ---CCCBSCCCEEETTSBHHHHHHHH---------HHHTCSEEEEECT---TSCEEEEEEHHHHH
T ss_pred --hhccccceeecchhhHHHHHHHHH---------HHcCcEEEEEEeC---CCEEEEEEEHHHHH
Confidence 0134444433 78899999999 9999999999998 79999999999996
|
| >d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Chloride channel protein, CBS tandem species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]
Probab=99.43 E-value=4.3e-14 Score=127.99 Aligned_cols=118 Identities=14% Similarity=0.148 Sum_probs=98.6
Q ss_pred CCCcccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhcccc----------
Q psy1056 176 YPDMQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLEN---------- 242 (590)
Q Consensus 176 ~~~~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~---------- 242 (590)
.+..++|++++.+ ++++.++++.| .+++++++||+++. .++.++|++|..|+.....
T Consensus 11 ~~V~diM~~~~~~v~~~~tv~e~~~~l---------~~~~~~~~PVvd~~-~~~~lvg~is~~dl~~~l~~~~~~~~~~~ 80 (160)
T d2d4za3 11 IQVGDIMVRDVTSIASTSTYGDLLHVL---------RQTKLKFFPFVDTP-DTNTLLGSIDRTEVEGLLQRRISAYRRQP 80 (160)
T ss_dssp CBTTSSSBSSCCCEETTCBHHHHHHHH---------HHCCCSEEEEESCT-TTCBEEEEEEHHHHHHHHHHHHHTTSSSC
T ss_pred eEHHHhcCCCCeEECCCCcHHHHHHHH---------HhcCCCcccccccc-ccccccccchHHHHHHHHhhccccccccc
Confidence 3556799988877 89999999999 99999999999851 1468999999999962110
Q ss_pred -----------------ccccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccc
Q psy1056 243 -----------------SANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKS 305 (590)
Q Consensus 243 -----------------~~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~ 305 (590)
.......+.++|.+ +++++.+++++.+++++|.+++++++||+| +|+++|+||++||+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~tv~~~~~l~~~~~~m~~~~v~~l~V~d-~g~lvGiIt~~Di~k~ 157 (160)
T d2d4za3 81 FEEMLTLEEIYRWEQREKNVVVNFETCRIDQ--SPFQLVEGTSLQKTHTLFSLLGLDRAYVTS-MGKLVGVVALAEIQAA 157 (160)
T ss_dssp CCSCCBHHHHHHHHHHHTTCBCCTTSSCEEC--CSCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHH
T ss_pred hhhccccchhhhhhhhhcccccceeeecccC--CCEEEcCCCCHHHHHHHHHHcCCeEEEEEE-CCEEEEEEEHHHHHHH
Confidence 01123456779998 999999999999999999999999999998 6999999999999986
Q ss_pred c
Q psy1056 306 R 306 (590)
Q Consensus 306 ~ 306 (590)
+
T Consensus 158 I 158 (160)
T d2d4za3 158 I 158 (160)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein TM0935 species: Thermotoga maritima [TaxId: 2336]
Probab=99.42 E-value=4.2e-14 Score=126.19 Aligned_cols=55 Identities=15% Similarity=0.199 Sum_probs=51.3
Q ss_pred hhhcccCccccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEecccc
Q psy1056 17 KVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74 (590)
Q Consensus 17 ~vk~~~~~m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Di 74 (590)
+||+..++|..+|+++++++|+.+|++.|.+++++++||+|++ ++++|++|.+|+
T Consensus 2 k~~~v~~~m~~~p~~v~~~~~v~~a~~~m~~~~~~~ipVvd~~---~~~vGiis~~Dl 56 (145)
T d1o50a3 2 KVKDVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARD---NKLVGMIPVMHL 56 (145)
T ss_dssp BHHHHTTSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEET---TEEEEEEEHHHH
T ss_pred cceEhHHhCCCCCEEECCcCcHHHHHHHHHHcCCceEEEeccC---cceeeeeccchh
Confidence 6778888899999999999999999999999999999999976 799999999964
|
| >d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein VC0737 species: Vibrio cholerae [TaxId: 666]
Probab=99.41 E-value=5e-14 Score=125.03 Aligned_cols=122 Identities=25% Similarity=0.369 Sum_probs=89.6
Q ss_pred hhhcccCccccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccccccccCCCCCCCCccCCcccccc
Q psy1056 17 KVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKDLSSPLT 96 (590)
Q Consensus 17 ~vk~~~~~m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Did~l~~~~~~~~~~~~~~~~~l~ 96 (590)
+|++. |+++++|+++++|+.+|+++|.+++++++||+|++ |+++|++|.+| ++... ...+.
T Consensus 3 ~v~di---M~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd~~---~~~~Giit~~d--l~~~~-----------~~~~~ 63 (139)
T d2o16a3 3 KVEDM---MTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDAN---KKLLGIVSQRD--LLAAQ-----------ESSLQ 63 (139)
T ss_dssp BGGGT---SEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT---CBEEEEEEHHH--HHHHH-----------HHHCC
T ss_pred EHHHh---CcCCCeEECCcCCHHHHHHHHHHcCCCeeeeeccc---ccccccccHHH--HHHHH-----------Hhhhh
Confidence 35555 99999999999999999999999999999999987 89999999994 33100 00000
Q ss_pred cccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHHcCCcEEEEcCCCCchHHHHHHHHHhhhcC
Q psy1056 97 KKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEY 176 (590)
Q Consensus 97 ~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~~~~dvv~~~~~~~~~~~~~~~v~~vk~~~ 176 (590)
. . . .. .......
T Consensus 64 ~----~--~--------~~------------------------------------------------------~~~~~~~ 75 (139)
T d2o16a3 64 R----S--A--------QG------------------------------------------------------DSLAFET 75 (139)
T ss_dssp -----------------------------------------------------------------------------CCC
T ss_pred h----h--h--------cc------------------------------------------------------ccccccc
Confidence 0 0 0 00 0000001
Q ss_pred CCcccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhh
Q psy1056 177 PDMQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVD 238 (590)
Q Consensus 177 ~~~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~ 238 (590)
+..++|+.++.+ ++++.++++.| .+++++++||+|+ |+++|+||.+|+.
T Consensus 76 ~v~~im~~~~~~v~~~~~l~~a~~~m---------~~~~~~~lpVvd~----~~lvGiit~~Dil 127 (139)
T d2o16a3 76 PLFEVMHTDVTSVAPQAGLKESAIYM---------QKHKIGCLPVVAK----DVLVGIITDSDFV 127 (139)
T ss_dssp BHHHHSCSCEEEBCTTSBHHHHHHHH---------HHTTCSCEEEEET----TEEEEEECHHHHH
T ss_pred chhHhhccccccccccchHHHHHHHH---------HHcCceEEEEEEC----CEEEEEEEHHHHH
Confidence 222366666555 88999999999 9999999999996 8999999999997
|
| >d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein Rv2626c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.41 E-value=6.3e-14 Score=121.61 Aligned_cols=111 Identities=20% Similarity=0.348 Sum_probs=85.6
Q ss_pred ccccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccccccccCCCCCCCCccCCcccccccccccCC
Q psy1056 24 GFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKDLSSPLTKKITLAA 103 (590)
Q Consensus 24 ~m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Did~l~~~~~~~~~~~~~~~~~l~~~~~~~~ 103 (590)
+|+++++++++++|+.+|+++|.+++++++||+|++ |+++|++|.+|+.... +.......
T Consensus 6 iM~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~---~~~~Giit~~Di~~~~----------------~~~~~~~~- 65 (123)
T d1y5ha3 6 IMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDD---DRLHGMLTDRDIVIKG----------------LAAGLDPN- 65 (123)
T ss_dssp HSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECGG---GBEEEEEEHHHHHHTT----------------GGGTCCTT-
T ss_pred hcCCCCcEECCcCcHHHHHHHHHHcCCCceEEEecc---chhhhhhhhhhHhhhh----------------hhcCCCcc-
Confidence 399999999999999999999999999999999887 8999999999531110 00000000
Q ss_pred ceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHHcCCcEEEEcCCCCchHHHHHHHHHhhhcCCCccccc
Q psy1056 104 PLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIG 183 (590)
Q Consensus 104 piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~im~ 183 (590)
. ....++|+
T Consensus 66 --------~---------------------------------------------------------------~~v~~im~ 74 (123)
T d1y5ha3 66 --------T---------------------------------------------------------------ATAGELAR 74 (123)
T ss_dssp --------T---------------------------------------------------------------SBHHHHHT
T ss_pred --------c---------------------------------------------------------------ceEEEEee
Confidence 0 00011454
Q ss_pred ccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhh
Q psy1056 184 GNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVD 238 (590)
Q Consensus 184 ~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~ 238 (590)
.++.+ ++++.++++.| .+++++++||+|+ ++++|+||.+|+.
T Consensus 75 ~~~~~v~~~~~~~~~~~~m---------~~~~~~~lpVvd~----~~lvGiit~~Dil 119 (123)
T d1y5ha3 75 DSIYYVDANASIQEMLNVM---------EEHQVRRVPVISE----HRLVGIVTEADIA 119 (123)
T ss_dssp TCCCCEETTCCHHHHHHHH---------HHHTCSEEEEEET----TEEEEEEEHHHHH
T ss_pred ccceeeeecchHHHHHHHH---------HHcCceEEEEEEC----CEEEEEEEHHHHH
Confidence 55444 88999999999 9999999999996 8999999999986
|
| >d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein TM0892, CBS tandem species: Thermotoga maritima [TaxId: 2336]
Probab=99.37 E-value=8.6e-13 Score=113.95 Aligned_cols=109 Identities=22% Similarity=0.196 Sum_probs=86.9
Q ss_pred hhhcccCccccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccccccccCCCCCCCCccCCcccccc
Q psy1056 17 KVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKDLSSPLT 96 (590)
Q Consensus 17 ~vk~~~~~m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Did~l~~~~~~~~~~~~~~~~~l~ 96 (590)
+|+++ |+++++++++++|+.+|+++|.+++.+++||+|++ ++++|++|.+ |++..+ ...++.
T Consensus 2 ~v~~~---m~~~~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd~~---~~~~Gii~~~--dl~~~~----------~~~~v~ 63 (121)
T d1vr9a3 2 KVKKW---VTQDFPMVEESATVRECLHRMRQYQTNECIVKDRE---GHFRGVVNKE--DLLDLD----------LDSSVF 63 (121)
T ss_dssp BGGGG---CBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECTT---SBEEEEEEGG--GGTTSC----------TTSBSG
T ss_pred Cchhh---hcCCCeEECCCCCHHHHHHhhhhcCcEEEEEEeCC---ceeEEEeehh--hhhhhh----------cccccc
Confidence 35555 99999999999999999999999999999999877 8999999999 443210 001111
Q ss_pred cccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHHcCCcEEEEcCCCCchHHHHHHHHHhhhcC
Q psy1056 97 KKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEY 176 (590)
Q Consensus 97 ~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~~~~dvv~~~~~~~~~~~~~~~v~~vk~~~ 176 (590)
T Consensus 64 -------------------------------------------------------------------------------- 63 (121)
T d1vr9a3 64 -------------------------------------------------------------------------------- 63 (121)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhh
Q psy1056 177 PDMQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVD 238 (590)
Q Consensus 177 ~~~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~ 238 (590)
++|..++.+ ++++.++++.| .+++...+||+|+ +|+++|+||..|+.
T Consensus 64 ---~~~~~~~~~v~~~~~l~~~~~~~---------~~~~~~~lpVvde---~g~~~Gvit~~dil 113 (121)
T d1vr9a3 64 ---NKVSLPDFFVHEEDNITHALLLF---------LEHQEPYLPVVDE---EMRLKGAVSLHDFL 113 (121)
T ss_dssp ---GGCBCTTCCEETTSBHHHHHHHH---------HHCCCSEEEEECT---TCBEEEEEEHHHHH
T ss_pred ---ccccCccEEECCCCCHHHHHHHH---------HhcCceeeeeECC---CCeEEEEEEHHHHH
Confidence 123223222 67888999999 9999999999998 79999999999997
|
| >d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.36 E-value=2.3e-13 Score=123.28 Aligned_cols=117 Identities=16% Similarity=0.177 Sum_probs=94.2
Q ss_pred CCccccc--ccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhccc-c-----c--
Q psy1056 177 PDMQVIG--GNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLE-N-----S-- 243 (590)
Q Consensus 177 ~~~~im~--~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~-~-----~-- 243 (590)
...++|. .++++ ++++.+|++.| .+++++++||+++. +++++|++|.+|+.... . .
T Consensus 14 t~~Dlm~~~~~vv~l~~~~sv~eA~~~l---------~~~~~~~~pVv~~~--~~~~vG~is~~Dl~~~~~~~~~~~~~~ 82 (159)
T d2v8qe2 14 RCYDLIPTSSKLVVFDTSLQVKKAFFAL---------VTNGVRAAPLWDSK--KQSFVGMLTITDFINILHRYYKSALVQ 82 (159)
T ss_dssp BGGGGSCSEEEEEEEETTSBHHHHHHHH---------HHHTCSEEEEEETT--TTEEEEEEEHHHHHHHHHHHHHHHTTT
T ss_pred EEEeECCCCCceEEEcCCCcHHHHHHHH---------HHcCCCceeEEECC--CCcEEEEEEHHHHHHHHHhccccccch
Confidence 3445773 33443 78999999999 99999999999852 58999999999996211 0 0
Q ss_pred ---------cccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEc-CCCceEEEEeeccccccc
Q psy1056 244 ---------ANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILN-DKGELIALIARTDLKKSR 306 (590)
Q Consensus 244 ---------~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd-~~g~l~Giit~~dll~~~ 306 (590)
......+.++|.+ +++++++++++.+|+++|.+++++++||+| ++|+++|+||.+||++.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~l~~v~~~m~~~~~~~v~Vvd~~~g~~~GivT~~dilk~l 153 (159)
T d2v8qe2 83 IYELEEHKIETWREVYLQDSFK--PLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFL 153 (159)
T ss_dssp CCCGGGCBHHHHHHHHSSSSCC--CCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHH
T ss_pred hhhhhhhhcccccceeeeeecc--ceEEECCCCcHHHHHHHHHHhCCeEEEEEECCCCeEEEEEeHHHHHHHH
Confidence 0012345678888 999999999999999999999999999998 468999999999999865
|
| >d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein PH0107 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.36 E-value=5.7e-13 Score=116.97 Aligned_cols=113 Identities=17% Similarity=0.277 Sum_probs=87.9
Q ss_pred hhhcccCccccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEecccc-ccccCCCCCCCCccCCccccc
Q psy1056 17 KVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV-DFLENSANMDLKIEKDLSSPL 95 (590)
Q Consensus 17 ~vk~~~~~m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Di-d~l~~~~~~~~~~~~~~~~~l 95 (590)
.|+++ |+++++++++++|+.+|+++|.+++++++||+|++ |+++|++|.+|+ +.+... .....
T Consensus 6 pV~~i---m~~~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~~---~~~~Giit~~di~~~~~~~-------~~~~~--- 69 (132)
T d2yzia1 6 PIKVY---MTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDD---GNVVGFFTKSDIIRRVIVP-------GLPYD--- 69 (132)
T ss_dssp BGGGT---CBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECTT---SCEEEEEEHHHHHHHTTTT-------CCCTT---
T ss_pred cHHHH---cCCCCeEECCcCcHHHHHHHHHHcCCcEEEEeccc---ceeeeeeeHHHHHHHHhhc-------cCccc---
Confidence 35555 99999999999999999999999999999999988 899999999953 121100 00000
Q ss_pred ccccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHHcCCcEEEEcCCCCchHHHHHHHHHhhhc
Q psy1056 96 TKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKE 175 (590)
Q Consensus 96 ~~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~~~~dvv~~~~~~~~~~~~~~~v~~vk~~ 175 (590)
T Consensus 70 -------------------------------------------------------------------------------- 69 (132)
T d2yzia1 70 -------------------------------------------------------------------------------- 69 (132)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhh
Q psy1056 176 YPDMQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVD 238 (590)
Q Consensus 176 ~~~~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~ 238 (590)
.+..++|..++.+ ++++.++++.| .+++++++||+++ |+++|+||.+|+.
T Consensus 70 ~~v~~im~~~~~~v~~~~~~~~~~~~m---------~~~~~~~l~V~~~----~~~vGivt~~Dil 122 (132)
T d2yzia1 70 IPVERIMTRNLITANVNTPLGEVLRKM---------AEHRIKHILIEEE----GKIVGIFTLSDLL 122 (132)
T ss_dssp SBGGGTCBCSCCEEETTSBHHHHHHHH---------HHHTCSEEEEEET----TEEEEEEEHHHHH
T ss_pred eeEeecccccccccCcchHHHHHHHHH---------HHcCCCEEEEEEC----CEEEEEEEHHHHH
Confidence 1111245444444 88899999999 9999999998875 8999999999997
|
| >d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein SSO3205 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.36 E-value=3.1e-13 Score=118.94 Aligned_cols=122 Identities=23% Similarity=0.359 Sum_probs=91.2
Q ss_pred hhhcccCccccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccccc-cccCCCCCCCCccCCccccc
Q psy1056 17 KVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVD-FLENSANMDLKIEKDLSSPL 95 (590)
Q Consensus 17 ~vk~~~~~m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Did-~l~~~~~~~~~~~~~~~~~l 95 (590)
+||+. |+++|+++++++|+.+|+++|.+++++++||+|+ +++|++|..|+. .+....
T Consensus 2 ~V~~l---M~~~~~~v~~~~tl~~a~~~m~~~~~~~l~V~d~-----~lvg~~~~~~~~~~~~~~~-------------- 59 (135)
T d3ddja2 2 NIETL---MIKNPPILSKEDRLGSAFKKINEGGIGRIIVANE-----KIEGLLTTRDLLSTVESYC-------------- 59 (135)
T ss_dssp SGGGT---CEESCCEECTTSBHHHHHHHTTGGGCCEEEEESS-----SEEEEEEHHHHHGGGTTCC--------------
T ss_pred EeeEE---eeCCCeEECCCCcHHHHHHHHHHhCCeEEEEEec-----ceeceeeccchhhhhcccc--------------
Confidence 45555 9999999999999999999999999999999975 699999999532 211000
Q ss_pred ccccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHHcCCcEEEEcCCCCchHHHHHHHHHhhhc
Q psy1056 96 TKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKE 175 (590)
Q Consensus 96 ~~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~~~~dvv~~~~~~~~~~~~~~~v~~vk~~ 175 (590)
....... .. .....
T Consensus 60 ---------------~~~~~~~-----------------------------------------------~~---~~~~~- 73 (135)
T d3ddja2 60 ---------------KDSCSQG-----------------------------------------------DL---YHIST- 73 (135)
T ss_dssp ------------------CCHH-----------------------------------------------HH---HHHHT-
T ss_pred ---------------ccchhhh-----------------------------------------------hc---ccccc-
Confidence 0000000 00 00011
Q ss_pred CCCcccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhh
Q psy1056 176 YPDMQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVD 238 (590)
Q Consensus 176 ~~~~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~ 238 (590)
.+..++|+.++.+ ++++.+|++.| .+++++++||+|+ +|+++|+||.+|+.
T Consensus 74 ~~v~~im~~~~~~v~~~~~l~~a~~~m---------~~~~i~~lpVvd~---~g~lvGiit~~Dil 127 (135)
T d3ddja2 74 TPIIDYMTPNPVTVYNTSDEFTAINIM---------VTRNFGSLPVVDI---NDKPVGIVTEREFL 127 (135)
T ss_dssp SBGGGTSEESCCCEETTSCHHHHHHHH---------HHHTCSEEEEECT---TSCEEEEEEHHHHG
T ss_pred CCHHHHhCCccceEEeccccchhhhhh---------hhcceeEEEEEeC---CCEEEEEEEHHHHH
Confidence 3334578777766 88999999999 9999999999998 79999999999998
|
| >d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein Ta0289 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.36 E-value=2.6e-13 Score=120.81 Aligned_cols=115 Identities=17% Similarity=0.260 Sum_probs=90.5
Q ss_pred hhhcccCccccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEecccc-ccccCCCCCCCCccCCccccc
Q psy1056 17 KVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV-DFLENSANMDLKIEKDLSSPL 95 (590)
Q Consensus 17 ~vk~~~~~m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Di-d~l~~~~~~~~~~~~~~~~~l 95 (590)
+|++. |.++++++++++|+.+|++.|.+++++++||+|++ |+++|++|.+|+ +.+. ++. .+..
T Consensus 4 ~v~di---m~~~~~~v~~~~tl~~a~~~m~~~~~~~~~V~d~~---~~~~Giit~~di~~~~~-~~~------~~~~--- 67 (142)
T d1pvma4 4 RVEKI---MNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDN---GNDVGLLSERSIIKRFI-PRN------KKPD--- 67 (142)
T ss_dssp BGGGT---SBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECTT---SCEEEEEEHHHHHHHTG-GGC------CCGG---
T ss_pred EHHHh---CCCCCcEECCcCcHHHHHHHHHHCCCceEeeeccC---CcccceEEeechhhhhh-hhc------cccc---
Confidence 45555 99999999999999999999999999999999987 899999999953 1111 000 0000
Q ss_pred ccccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHHcCCcEEEEcCCCCchHHHHHHHHHhhhc
Q psy1056 96 TKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKE 175 (590)
Q Consensus 96 ~~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~~~~dvv~~~~~~~~~~~~~~~v~~vk~~ 175 (590)
.
T Consensus 68 ------------------------------------------------------------------------------~- 68 (142)
T d1pvma4 68 ------------------------------------------------------------------------------E- 68 (142)
T ss_dssp ------------------------------------------------------------------------------G-
T ss_pred ------------------------------------------------------------------------------c-
Confidence 0
Q ss_pred CCCcccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhh
Q psy1056 176 YPDMQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVD 238 (590)
Q Consensus 176 ~~~~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~ 238 (590)
.+..++|+.++.+ ++++.++.+.| .+++++++||+|+ +|+++|+||.+|+.
T Consensus 69 ~~v~~im~~~~~~v~~~~~l~~~~~~m---------~~~~~~~lpVvd~---~g~l~Giit~~Dil 122 (142)
T d1pvma4 69 VPIRLVMRKPIPKVKSDYDVKDVAAYL---------SENGLERCAVVDD---PGRVVGIVTLTDLS 122 (142)
T ss_dssp SBGGGTSBSSCCEEETTCBHHHHHHHH---------HHHTCSEEEEECT---TCCEEEEEEHHHHT
T ss_pred cccccccccccccccchhhHHHHHHHH---------HHcCCcEEEEEec---CCEEEEEEEHHHHH
Confidence 1112356665555 88999999999 9999999999998 79999999999997
|
| >d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Magnesium transporter MgtE species: Enterococcus faecalis [TaxId: 1351]
Probab=99.36 E-value=4.2e-13 Score=117.03 Aligned_cols=106 Identities=22% Similarity=0.349 Sum_probs=86.8
Q ss_pred CccccCCEEECCCCCHHHHHHHHHHc-----CccceeeccCCcccceeEEEEeccccccccCCCCCCCCccCCccccccc
Q psy1056 23 HGFIRDPVCIAPSTTLGKVLQMKKQH-----GFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKDLSSPLTK 97 (590)
Q Consensus 23 ~~m~~~~vtv~~~~ti~eA~~lM~~~-----~i~~lpVvd~~~~~~~lvGivT~~Did~l~~~~~~~~~~~~~~~~~l~~ 97 (590)
.+|+++++++++++|+.+|++.|+++ +++.+||+|++ ++++|+++.+ +++..+ ..+++
T Consensus 5 ~iM~~d~i~v~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~---~~l~G~v~~~--~l~~~~----------~~~~v-- 67 (127)
T d2ouxa2 5 AIMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQE---NHLVGVISLR--DLIVND----------DDTLI-- 67 (127)
T ss_dssp HHCBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTT---CBEEEEEEHH--HHTTSC----------TTSBH--
T ss_pred HhCCCCcEEECCCCcHHHHHHHhHhhcccccceeeeEEEecC---CeEEEEEEee--cccccc----------ccEEh--
Confidence 46999999999999999999999887 47899999988 8999999999 554211 00001
Q ss_pred ccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHHcCCcEEEEcCCCCchHHHHHHHHHhhhcCC
Q psy1056 98 KITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYP 177 (590)
Q Consensus 98 ~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~ 177 (590)
.
T Consensus 68 ---------------------------------------------------------------------------~---- 68 (127)
T d2ouxa2 68 ---------------------------------------------------------------------------A---- 68 (127)
T ss_dssp ---------------------------------------------------------------------------H----
T ss_pred ---------------------------------------------------------------------------h----
Confidence 1
Q ss_pred Ccccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhh
Q psy1056 178 DMQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVD 238 (590)
Q Consensus 178 ~~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~ 238 (590)
++|++++.+ ++++.++++.| .+++++++||+|+ +|+++|+||.+|+.
T Consensus 69 --~im~~~~~~v~~~~~l~~a~~~m---------~~~~~~~lPVVD~---~g~lvGiIt~~Dil 118 (127)
T d2ouxa2 69 --DILNERVISVHVGDDQEDVAQTI---------RDYDFLAVPVTDY---DDHLLGIVTVDDII 118 (127)
T ss_dssp --HHSBSCCCCEETTSBHHHHHHHH---------HHHTCSEEEEECT---TCBEEEEEEHHHHH
T ss_pred --hhccCCCccCCCCCCHHHHHHHH---------HHhCCEEEEEEeC---CCEEEEEEEHHHHH
Confidence 255555544 88999999999 9999999999998 79999999999997
|
| >d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein NE2398 species: Nitrosomonas europaea [TaxId: 915]
Probab=99.36 E-value=3.9e-13 Score=117.22 Aligned_cols=106 Identities=18% Similarity=0.239 Sum_probs=82.0
Q ss_pred cCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEecccc-ccccCCCCCCCCccCCcccccccccccCCce
Q psy1056 27 RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV-DFLENSANMDLKIEKDLSSPLTKKITLAAPL 105 (590)
Q Consensus 27 ~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Di-d~l~~~~~~~~~~~~~~~~~l~~~~~~~~pi 105 (590)
+++++++|++|+.+|+++|.+++++++||+|++ +++|++|.+|+ +.+...+ .+ ..
T Consensus 13 ~~v~~i~~~~tl~~a~~~m~~~~~~~vpV~~~~----~~vGiit~~Di~~~~~~~~-------~~----~~--------- 68 (127)
T d2rc3a1 13 HTVVAIGPDDSVFNAMQKMAADNIGALLVMKDE----KLVGILTERDFSRKSYLLD-------KP----VK--------- 68 (127)
T ss_dssp CCCCEECTTSBHHHHHHHHHHHTCSEEEEEETT----EEEEEEEHHHHHHHGGGSS-------SC----GG---------
T ss_pred CccEEECCcCcHHHHHHHHHHcCCCEEEEEECC----eEEEEEEccchhhhhhhhc-------cc----cc---------
Confidence 488999999999999999999999999999865 99999999953 1110000 00 00
Q ss_pred eeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHHcCCcEEEEcCCCCchHHHHHHHHHhhhcCCCccccccc
Q psy1056 106 VSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGN 185 (590)
Q Consensus 106 v~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~im~~~ 185 (590)
. .+..++|+.+
T Consensus 69 --------------------------------------------------------------------~-~~v~~im~~~ 79 (127)
T d2rc3a1 69 --------------------------------------------------------------------D-TQVKEIMTRQ 79 (127)
T ss_dssp --------------------------------------------------------------------G-SBGGGTSBCS
T ss_pred --------------------------------------------------------------------c-eeEeeeccce
Confidence 0 1112356555
Q ss_pred ccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhh
Q psy1056 186 VVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVD 238 (590)
Q Consensus 186 ~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~ 238 (590)
+.+ ++++.++++.| .+++++++||+|+ |+++|+||.+|+.
T Consensus 80 ~~~v~~~~~l~~a~~~m---------~~~~~~~lpVvd~----~~~~GiIt~~Dil 122 (127)
T d2rc3a1 80 VAYVDLNNTNEDCMALI---------TEMRVRHLPVLDD----GKVIGLLSIGDLV 122 (127)
T ss_dssp CCCBCTTCBHHHHHHHH---------HHHTCSEEEEEET----TEEEEEEEHHHHH
T ss_pred eEEeccCccHHHHHHHH---------HHCCCcEEEEEEC----CEEEEEEEHHHHH
Confidence 544 88999999999 9999999999986 8999999999986
|
| >d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein ST2348 species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.35 E-value=4.4e-13 Score=116.84 Aligned_cols=113 Identities=19% Similarity=0.315 Sum_probs=87.7
Q ss_pred hhhcccCccccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccccccccCCCCCCCCccCCcccccc
Q psy1056 17 KVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKDLSSPLT 96 (590)
Q Consensus 17 ~vk~~~~~m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Did~l~~~~~~~~~~~~~~~~~l~ 96 (590)
.|+++ |+++++++++++|+.+|+++|.+++++++||+|++ +++|++|.+|+.-.+.. .....
T Consensus 5 ~V~d~---m~~~~v~v~~~~tl~~a~~~m~~~~~~~~pV~d~~----~~~Givt~~dl~~~~~~-------~~~~~---- 66 (127)
T d2ef7a1 5 IVKEY---MKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGN----KPVGIITERDIVKAIGK-------GKSLE---- 66 (127)
T ss_dssp BGGGT---SBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEETT----EEEEEEEHHHHHHHHHT-------TCCTT----
T ss_pred CHHHh---CCCCCeEECCcCcHHHHHHHHHHcCCceEEeeccc----chhhhcchhHHHHHHHh-------hcccc----
Confidence 46665 99999999999999999999999999999999875 99999999953111000 00000
Q ss_pred cccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHHcCCcEEEEcCCCCchHHHHHHHHHhhhcC
Q psy1056 97 KKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEY 176 (590)
Q Consensus 97 ~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~~~~dvv~~~~~~~~~~~~~~~v~~vk~~~ 176 (590)
.
T Consensus 67 -------------------------------------------------------------------------------~ 67 (127)
T d2ef7a1 67 -------------------------------------------------------------------------------T 67 (127)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred -------------------------------------------------------------------------------c
Confidence 0
Q ss_pred CCcccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhh
Q psy1056 177 PDMQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVD 238 (590)
Q Consensus 177 ~~~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~ 238 (590)
+..++|..++.+ ++++.++++.| .+++++++||+|+ +|+++|++|..|+.
T Consensus 68 ~v~~~~~~~~~~v~~~~~l~~~~~~m---------~~~~~~~l~Vvd~---~~~lvGiit~~Dll 120 (127)
T d2ef7a1 68 KAEEFMTASLITIREDSPITGALALM---------RQFNIRHLPVVDD---KGNLKGIISIRDIT 120 (127)
T ss_dssp BGGGTSEECCCCEETTSBHHHHHHHH---------HHHTCSEEEEECT---TSCEEEEEEHHHHH
T ss_pred hhhhhhhhhccccccccchhHHHHHH---------HHcCceEEEEEeC---CCeEEEEEEHHHHH
Confidence 011244444443 88999999999 9999999999998 79999999999996
|
| >d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Magnesium transporter MgtE species: Thermus thermophilus [TaxId: 274]
Probab=99.35 E-value=2.7e-13 Score=121.00 Aligned_cols=107 Identities=20% Similarity=0.293 Sum_probs=86.0
Q ss_pred cCccccCCEEECCCCCHHHHHHHHHHc-----CccceeeccCCcccceeEEEEeccccccccCCCCCCCCccCCcccccc
Q psy1056 22 KHGFIRDPVCIAPSTTLGKVLQMKKQH-----GFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKDLSSPLT 96 (590)
Q Consensus 22 ~~~m~~~~vtv~~~~ti~eA~~lM~~~-----~i~~lpVvd~~~~~~~lvGivT~~Did~l~~~~~~~~~~~~~~~~~l~ 96 (590)
.++|+++++++++++|+.+|+++|+++ +++.+||+|++ |+++|++|.+ |++..+ ..+++.
T Consensus 4 G~iM~~~~itv~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~---~~l~G~v~~~--dl~~~~----------~~~~v~ 68 (144)
T d2yvxa2 4 GGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEK---GRLKGVLSLR--DLIVAD----------PRTRVA 68 (144)
T ss_dssp GGGCBSCCCEECSSCBHHHHHHHSSSSCTTSSCSSBCEEBCTT---CBBCCBCBHH--HHTTSC----------TTCBST
T ss_pred ccccCCCCEEECCCCcHHHHHHHHHHhcccccceeeeEEecCC---CCEecccchh--hhhhcc----------cccchH
Confidence 456999999999999999999999887 48899999987 8999999999 443211 001111
Q ss_pred cccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHHcCCcEEEEcCCCCchHHHHHHHHHhhhcC
Q psy1056 97 KKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEY 176 (590)
Q Consensus 97 ~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~~~~dvv~~~~~~~~~~~~~~~v~~vk~~~ 176 (590)
T Consensus 69 -------------------------------------------------------------------------------- 68 (144)
T d2yvxa2 69 -------------------------------------------------------------------------------- 68 (144)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhh
Q psy1056 177 PDMQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVD 238 (590)
Q Consensus 177 ~~~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~ 238 (590)
++|+.++.+ ++++.+|++.| .+++++++||+|+ +|+++|+||.+|+.
T Consensus 69 ---~im~~~~~~v~~~~~~~~a~~~m---------~~~~~~~lPVVd~---~g~lvGiIt~~Dil 118 (144)
T d2yvxa2 69 ---EIMNPKVVYVRTDTDQEEVARLM---------ADYDFTVLPVVDE---EGRLVGIVTVDDVL 118 (144)
T ss_dssp ---TTSBSSCCCEESSCCHHHHHHHH---------HHSCCSEEEEECS---SCBEEEEEEHHHHH
T ss_pred ---HhcccCCccCCCCChHHHHHHHH---------HHcCCCEEEEEeE---CCEEEEEEEHHHHH
Confidence 144444433 77889999999 9999999999998 79999999999997
|
| >d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein SSO3205 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.32 E-value=4.4e-13 Score=118.81 Aligned_cols=121 Identities=19% Similarity=0.234 Sum_probs=91.1
Q ss_pred hhhcccCccccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccccccccCCCCCCCCccCCcccccc
Q psy1056 17 KVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKDLSSPLT 96 (590)
Q Consensus 17 ~vk~~~~~m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Did~l~~~~~~~~~~~~~~~~~l~ 96 (590)
.|++. |+++++++++++|+.+|+++|.+++++++||+|++ ++++|++|..|+.-...+ ..
T Consensus 3 ~V~~i---Mt~~v~~v~~~~tl~~a~~~m~~~~~~~ipVv~~~---~~~~g~i~~~di~~~~~~-------------~~- 62 (141)
T d3ddja1 3 PVKVF---MSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDD---NKVVGIVTVVNAIKQLAK-------------AV- 62 (141)
T ss_dssp BHHHH---SBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECTT---SCEEEEEEHHHHHHHHHH-------------HH-
T ss_pred eeHHh---CcCCCeEEcCcCcHHHHHHHHHHcCCCeeeccccc---Cccccccccccchhhhhc-------------cc-
Confidence 35555 99999999999999999999999999999999987 899999999943111000 00
Q ss_pred cccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHHcCCcEEEEcCCCCchHHHHHHHHHhhhcC
Q psy1056 97 KKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEY 176 (590)
Q Consensus 97 ~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~~~~dvv~~~~~~~~~~~~~~~v~~vk~~~ 176 (590)
... . . ..... .
T Consensus 63 --------------------------~~~--------~---------------------------~-------~~~~~-~ 73 (141)
T d3ddja1 63 --------------------------DKL--------D---------------------------P-------DYFYG-K 73 (141)
T ss_dssp --------------------------HHT--------C---------------------------T-------HHHHT-C
T ss_pred --------------------------ccc--------c---------------------------c-------ccccC-C
Confidence 000 0 0 00000 1
Q ss_pred CCcccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhh
Q psy1056 177 PDMQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVD 238 (590)
Q Consensus 177 ~~~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~ 238 (590)
+..++|+.++.+ ++++.++++.| .+++++++||+|+ +++++|+||.+|+.
T Consensus 74 ~v~~im~~~~~~v~~~~~~~~~~~~m---------~~~~~~~l~Vvd~---~~~~iGiIt~~Dil 126 (141)
T d3ddja1 74 VVKDVMVTNLVTIDELASVNRAAAEM---------IVKRIGSLLILNK---DNTIRGIITERDLL 126 (141)
T ss_dssp BHHHHSBCCCCBCCTTSBHHHHHHHH---------HHHTCSEEEEECT---TSCEEEEEEHHHHH
T ss_pred CHHHHhCcccccccccchhhHHHHHH---------HHcCCCEEEEEcc---CCEEEEEEEHHHHH
Confidence 222367666555 88999999999 9999999999998 79999999999997
|
| >d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein MTH1622 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.31 E-value=8.2e-13 Score=113.91 Aligned_cols=112 Identities=21% Similarity=0.281 Sum_probs=86.9
Q ss_pred hhhcccCccccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccccc-cccCCCCCCCCccCCccccc
Q psy1056 17 KVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVD-FLENSANMDLKIEKDLSSPL 95 (590)
Q Consensus 17 ~vk~~~~~m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Did-~l~~~~~~~~~~~~~~~~~l 95 (590)
+|+++ |+++++++++++|+.||++.|.+++++.+||+|++ +++|++|.+|+. .+.... . +
T Consensus 1 kV~di---M~~~~~~v~~~~sl~ea~~~~~~~~~~~~~V~~~~----~~~Gvit~~Di~~~l~~~~--------~----~ 61 (120)
T d1pbja3 1 RVEDV---MVTDVDTIDITASLEDVLRNYVENAKGSSVVVKEG----VRVGIVTTWDVLEAIAEGD--------D----L 61 (120)
T ss_dssp CHHHH---CBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEETT----EEEEEEEHHHHHHHHHHTC--------C----T
T ss_pred ChHHh---CCCCCeEECCcCcHHHHHHHHHHcCceEEEEEeCC----cEEEEEEeeeccccccccc--------c----c
Confidence 45666 99999999999999999999999999999999875 999999999531 111000 0 0
Q ss_pred ccccccCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHHcCCcEEEEcCCCCchHHHHHHHHHhhhc
Q psy1056 96 TKKITLAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKE 175 (590)
Q Consensus 96 ~~~~~~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~~~~dvv~~~~~~~~~~~~~~~v~~vk~~ 175 (590)
. +
T Consensus 62 ~-------------------------------------~----------------------------------------- 63 (120)
T d1pbja3 62 A-------------------------------------E----------------------------------------- 63 (120)
T ss_dssp T-------------------------------------T-----------------------------------------
T ss_pred c-------------------------------------c-----------------------------------------
Confidence 0 0
Q ss_pred CCCcccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhh
Q psy1056 176 YPDMQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVD 238 (590)
Q Consensus 176 ~~~~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~ 238 (590)
.+..++|+.++.+ ++++.+|++.| .++++.++||+++ ++++|++|.+|+.
T Consensus 64 ~~v~~~m~~~~~~v~~~~~l~~a~~~m---------~~~~~~~l~V~~~----~~l~Givt~~Dil 116 (120)
T d1pbja3 64 VKVWEVMERDLVTISPRATIKEAAEKM---------VKNVVWRLLVEED----DEIIGVISATDIL 116 (120)
T ss_dssp SBHHHHCBCGGGEECTTSCHHHHHHHH---------HHHTCSEEEEEET----TEEEEEEEHHHHH
T ss_pred eeEeeecccccccccchhHHHHHHHHH---------HHcCCeEEEEEEC----CEEEEEEEHHHHH
Confidence 1111255555544 88999999999 9999999999875 8999999999986
|
| >d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Chloride channel protein, CBS tandem species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]
Probab=99.31 E-value=1.1e-12 Score=118.58 Aligned_cols=140 Identities=18% Similarity=0.160 Sum_probs=91.0
Q ss_pred ccCccccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccccccccCCCCCCCCccCCcccccccccc
Q psy1056 21 YKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDVDFLENSANMDLKIEKDLSSPLTKKIT 100 (590)
Q Consensus 21 ~~~~m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Did~l~~~~~~~~~~~~~~~~~l~~~~~ 100 (590)
++++|+++++++++++|+.+|+++|.+++++++||+|++ ..+.++|++|..|+...+.+.. ..
T Consensus 13 V~diM~~~~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~~-~~~~lvg~is~~dl~~~l~~~~-------------~~--- 75 (160)
T d2d4za3 13 VGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTP-DTNTLLGSIDRTEVEGLLQRRI-------------SA--- 75 (160)
T ss_dssp TTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCT-TTCBEEEEEEHHHHHHHHHHHH-------------HT---
T ss_pred HHHhcCCCCeEECCCCcHHHHHHHHHhcCCCcccccccc-ccccccccchHHHHHHHHhhcc-------------cc---
Confidence 344599999999999999999999999999999999853 1368999999995421110000 00
Q ss_pred cCCceeeCCCCCCchHHHHHHHHHcCCeeEecCCCcchHHHHHHHHHcCCcEEEEcCCCCchHHHHHHHHHhhhcCCCcc
Q psy1056 101 LAAPLVSSPMDTVTESDMAIAMALCGGIGAAIGTREADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQ 180 (590)
Q Consensus 101 ~~~piv~~~~~tv~~~~~~~~~~~~G~~gi~~~~~~d~~~~~~~l~~~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~ 180 (590)
...... ........... . .. ....... ....+
T Consensus 76 ~~~~~~---~~~~~~~~~~~-~------------------------------------------~~-~~~~~~~-~~~~~ 107 (160)
T d2d4za3 76 YRRQPF---EEMLTLEEIYR-W------------------------------------------EQ-REKNVVV-NFETC 107 (160)
T ss_dssp TSSSCC---CSCCBHHHHHH-H------------------------------------------HH-HHTTCBC-CTTSS
T ss_pred ccccch---hhccccchhhh-h------------------------------------------hh-hhccccc-ceeee
Confidence 000000 00000000000 0 00 0000000 22234
Q ss_pred cccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhh
Q psy1056 181 VIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVD 238 (590)
Q Consensus 181 im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~ 238 (590)
+|..++.+ ++++.++++.| .+++++++||+++ |+++||||.+||.
T Consensus 108 ~~~~~~~tv~~~~~l~~~~~~m---------~~~~v~~l~V~d~----g~lvGiIt~~Di~ 155 (160)
T d2d4za3 108 RIDQSPFQLVEGTSLQKTHTLF---------SLLGLDRAYVTSM----GKLVGVVALAEIQ 155 (160)
T ss_dssp CEECCSCCBCTTCBHHHHHHHH---------HHHTCSEEEEEET----TEEEEEEEHHHHH
T ss_pred cccCCCEEEcCCCCHHHHHHHH---------HHcCCeEEEEEEC----CEEEEEEEHHHHH
Confidence 67666555 89999999999 9999999999986 8999999999986
|
| >d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Chloride channel protein 5, ClC-5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=9.9e-13 Score=120.42 Aligned_cols=106 Identities=18% Similarity=0.261 Sum_probs=89.3
Q ss_pred hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhcccc--------------------------
Q psy1056 189 TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFLEN-------------------------- 242 (590)
Q Consensus 189 ~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~~~-------------------------- 242 (590)
+.|++++.++| .+++++++||+++ ..+++++|++|.+|+.....
T Consensus 25 ~~tv~~a~~ll---------~~~~~~~~PVV~~-~~~~~lvG~is~~dl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (169)
T d2j9la1 25 SMTVEDVETII---------SETTYSGFPVVVS-RESQRLVGFVLRRDLIISIENARKKQDGVVSTSIIYFTEHSPPLPP 94 (169)
T ss_dssp CEEHHHHHHHH---------HHCCCSEEEEESC-TTTCBEEEEEEHHHHHHHHHHHHTSCSCCCTTCEEECSSSCCCCCT
T ss_pred cCCHHHHHHHH---------HHcCCCceeeeec-CCCCeEEEEEEhHHHHHHHhcccccccccccchhhhhcccchhhhh
Confidence 56899999999 9999999999942 11578999999999972110
Q ss_pred ccccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccC
Q psy1056 243 SANMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRD 307 (590)
Q Consensus 243 ~~~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~ 307 (590)
......+++++|.+ +++++.+++++.+++++|.+++.+++||+| +|+++|+||++|+++...
T Consensus 95 ~~~~~~~v~~im~~--~~~tv~~~~~l~~v~~~~~~~~~~~l~V~d-~g~lvGiIt~~Dil~~l~ 156 (169)
T d2j9la1 95 YTPPTLKLRNILDL--SPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NGRLLGIITKKDVLKHIA 156 (169)
T ss_dssp TCCCCEECGGGEES--SCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHH
T ss_pred ccccccchhhhccC--CCEEECCCCcHHHHHHHHHhcCceEEEEEE-CCEEEEEEEHHHHHHHHH
Confidence 01124668999999 999999999999999999999999999987 689999999999998764
|
| >d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.29 E-value=3e-12 Score=113.97 Aligned_cols=55 Identities=18% Similarity=0.291 Sum_probs=48.2
Q ss_pred hhhcccCccccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEecccc
Q psy1056 17 KVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74 (590)
Q Consensus 17 ~vk~~~~~m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Di 74 (590)
.+++..-.+.++++++++++|+.||+++|.+++++++||+|++ |+++|++|..|+
T Consensus 10 ~l~~l~i~~~~~v~~v~~~~tv~eal~~m~~~~~~~lpVvd~~---~~~~Gvit~~di 64 (145)
T d2v8qe1 10 SLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEK---GRVVDIYSKFDV 64 (145)
T ss_dssp BHHHHTCSBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECTT---SBEEEEEEGGGT
T ss_pred CHHHHcCCCCCCceEEcCcCcHHHHHHHHHHcCCCcccccccC---CceEEEEEcchh
Confidence 4555544466889999999999999999999999999999987 899999999964
|
| >d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein PAE2072 species: Pyrobaculum aerophilum [TaxId: 13773]
Probab=99.27 E-value=2.4e-12 Score=112.54 Aligned_cols=54 Identities=17% Similarity=0.266 Sum_probs=46.2
Q ss_pred hhhcccCccccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEecccc
Q psy1056 17 KVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74 (590)
Q Consensus 17 ~vk~~~~~m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Di 74 (590)
+|+++ |.++|+++++++|+.||+++|.+++++++||++.+ ..++++|++|..|+
T Consensus 2 ~V~di---m~~~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d-~~~~~iGi~~~~dl 55 (131)
T d2riha1 2 RTSEL---LKRPPVSLPETATIREVATELAKNRVGLAVLTARD-NPKRPVAVVSERDI 55 (131)
T ss_dssp BGGGG---CCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETT-EEEEEEEEEEHHHH
T ss_pred CHHHh---ccCCCEEECCCCcHHHHHHHHHHhCCCcEEEEEEc-CCCEEEEEEeeecc
Confidence 45555 99999999999999999999999999999999421 12799999999953
|
| >d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein C1556.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=99.27 E-value=1.8e-12 Score=119.63 Aligned_cols=118 Identities=16% Similarity=0.211 Sum_probs=94.2
Q ss_pred CCccccc--ccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhhcc-c-----cc--
Q psy1056 177 PDMQVIG--GNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVDFL-E-----NS-- 243 (590)
Q Consensus 177 ~~~~im~--~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~~~-~-----~~-- 243 (590)
...++|. ..+++ +.++.+|++.| .+++++++||+|+. +++++|++|..|+... . ..
T Consensus 21 ~~~dvm~~s~~vv~i~~~~~v~~A~~~m---------~~~~i~~lpVvd~~--~~~~vGiis~~Di~~~l~~~~~~~~~~ 89 (179)
T d2ooxe1 21 TSYDVLPTSFRLIVFDVTLFVKTSLSLL---------TLNNIVSAPLWDSE--ANKFAGLLTMADFVNVIKYYYQSSSFP 89 (179)
T ss_dssp BHHHHSCSEEEEEEEETTSBHHHHHHHH---------HHHTCSCEEEEETT--TTEEEEEECHHHHHHHHHHHHHHCSCG
T ss_pred EeeeeCCCCCcEEEEECcchHHHHHHHH---------HHcCCCeEEEEeCC--CCeeEEEEeechHHHHHHhccccccch
Confidence 3445774 34444 88999999999 99999999999852 5899999999999611 0 00
Q ss_pred ----c---------ccccchhhccccCCCeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCC-----ceEEEEeecccccc
Q psy1056 244 ----A---------NMDLKIEKVMTNVNEIISAQAGISLEEANVILEKSKKGKLPILNDKG-----ELIALIARTDLKKS 305 (590)
Q Consensus 244 ----~---------~~~~~V~~im~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g-----~l~Giit~~dll~~ 305 (590)
. ....++..+|.+ +++++++++++.+|+.+|.+++++++||+|++| +++|+||++||++.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~v~~~~sl~~~~~~m~~~~~~~lpVvd~~g~~~~~~vvgiiT~~dIlk~ 167 (179)
T d2ooxe1 90 EAIAEIDKFRLLGLREVERKIGAIPP--ETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKF 167 (179)
T ss_dssp GGGGGGGGSBHHHHHHHHHHTTCSCS--SCCCBCTTSBHHHHHHHHHHTTCSEEEEEEECTTTCCEEEEEEEEHHHHHHH
T ss_pred hhhhhhhccchhhhcccceeeeeccc--CceEECCCCcHHHHHHHhhhcCceEEEEEecCCCcCCCcEEEEEeHHHHHHH
Confidence 0 012335567888 999999999999999999999999999998765 59999999999998
Q ss_pred cC
Q psy1056 306 RD 307 (590)
Q Consensus 306 ~~ 307 (590)
+.
T Consensus 168 l~ 169 (179)
T d2ooxe1 168 IS 169 (179)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Nuclear protein SNF4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.26 E-value=1.6e-12 Score=115.16 Aligned_cols=55 Identities=16% Similarity=0.171 Sum_probs=49.8
Q ss_pred hhhcccCccccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEecccc
Q psy1056 17 KVKKYKHGFIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74 (590)
Q Consensus 17 ~vk~~~~~m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Di 74 (590)
.++++..+|.++++++++++|+.+|+++|.+++++++||+|++ |+++|++|.+|+
T Consensus 7 ~i~~l~~~~~~~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd~~---~~~vG~it~~Di 61 (140)
T d2nyca1 7 PIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDEN---GYLINVYEAYDV 61 (140)
T ss_dssp BGGGSSCCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT---CBEEEEEEHHHH
T ss_pred cHHHhCCccCCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecC---CeEcceehhhHH
Confidence 4566666788999999999999999999999999999999987 899999999964
|
| >d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.25 E-value=1.8e-11 Score=117.45 Aligned_cols=125 Identities=17% Similarity=0.237 Sum_probs=92.5
Q ss_pred HHHHHHHHHcCCcEEEEecCCCc---hhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCC
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGN---SIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPD 408 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~---~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~ 408 (590)
.+........|++.+.+....+. .....+.++.++..++ ..++.+++.|.++++.+.++|+|+|.+. .+.
T Consensus 88 ~~~~~~~~~~gad~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~v~t~~~a~~a~~~Gad~i~~~---~~~--- 160 (230)
T d1yxya1 88 MTEVDQLAALNIAVIAMDCTKRDRHDGLDIASFIRQVKEKYP-NQLLMADISTFDEGLVAHQAGIDFVGTT---LSG--- 160 (230)
T ss_dssp HHHHHHHHTTTCSEEEEECCSSCCTTCCCHHHHHHHHHHHCT-TCEEEEECSSHHHHHHHHHTTCSEEECT---TTT---
T ss_pred HHHHHHHHhcCCCEEEEecccccccchhhHHHHHHHHHhcCC-CceEecCCCCHHHHHHHHhcCCCEEEee---ccc---
Confidence 45667788889999988775543 3446788888888884 5667779999999999999999999432 222
Q ss_pred cccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 409 MQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 409 ~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
..+.+. .......+.......++|+|++|||+|+.|+.+|+++|||+|++|+.+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~ipvia~GGI~t~~d~~~al~~GAd~V~vGsAi~ 216 (230)
T d1yxya1 161 YTPYSRQEAGPDVALIEALCKAGIAVIAEGKIHSPEEAKKINDLGVAGIVVGGAIT 216 (230)
T ss_dssp SSTTSCCSSSCCHHHHHHHHHTTCCEEEESCCCSHHHHHHHHTTCCSEEEECHHHH
T ss_pred ccccccccchHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChhhc
Confidence 111111 2222223333344457999999999999999999999999999999884
|
| >d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein YkuL species: Bacillus subtilis [TaxId: 1423]
Probab=99.22 E-value=4.7e-12 Score=110.87 Aligned_cols=52 Identities=15% Similarity=0.364 Sum_probs=46.2
Q ss_pred hhhcccCcc--ccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEecccc
Q psy1056 17 KVKKYKHGF--IRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74 (590)
Q Consensus 17 ~vk~~~~~m--~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Di 74 (590)
+|++. | .++.+++++++|+.+|+++|.+++++++||+|++ |+++|++|.+|+
T Consensus 3 tv~~~---mip~~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~~---~~~vGiit~~di 56 (132)
T d1yava3 3 TVGQF---MIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPS---YRLHGLIGTNMI 56 (132)
T ss_dssp BHHHH---SEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTT---CBEEEEEEHHHH
T ss_pred CHHHc---cccccceEEEcCCCCHHHHHHHHHhhCCCceEEeecc---cccccEEEcchh
Confidence 45555 8 5688999999999999999999999999999987 899999999954
|
| >d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Staphylococcus aureus [TaxId: 1280]
Probab=99.18 E-value=7.2e-11 Score=112.33 Aligned_cols=129 Identities=13% Similarity=0.111 Sum_probs=93.5
Q ss_pred HHHHHHHHHcCCcEEEEecCCCch--hhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCc
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGNS--IYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDM 409 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~~--~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~ 409 (590)
.+..+...++|++.+.++...+.. ....+.++.+++.+. .+++..++.+.++++++.+.|+|+|.+....... .
T Consensus 78 ~~~~~~~~~agad~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~t~~~a~~~~~~g~d~i~~~~~~~~~---~ 153 (222)
T d1y0ea_ 78 SKEVDELIESQCEVIALDATLQQRPKETLDELVSYIRTHAP-NVEIMADIATVEEAKNAARLGFDYIGTTLHGYTS---Y 153 (222)
T ss_dssp HHHHHHHHHHTCSEEEEECSCSCCSSSCHHHHHHHHHHHCT-TSEEEEECSSHHHHHHHHHTTCSEEECTTTTSST---T
T ss_pred HHHHHhHHHcCCCEEEeeccccccccchHHHHHHHHHHhCC-ceEEeecCCCHHHHHHHHHcCCCeEEEeccCCcc---c
Confidence 456667888899999887644322 334667777888774 4566779999999999999999999553322221 1
Q ss_pred ccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccC
Q psy1056 410 QVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAG 464 (590)
Q Consensus 410 ~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~ 464 (590)
..... ....+..+.+.....++|||++|||+|+.|+.+++++|||+|++|++|..
T Consensus 154 ~~~~~~~~~~~~~i~~~~~~~~iPVia~GGI~t~~d~~~~~~~GAdgV~iGsAi~r 209 (222)
T d1y0ea_ 154 TQGQLLYQNDFQFLKDVLQSVDAKVIAEGNVITPDMYKRVMDLGVHCSVVGGAITR 209 (222)
T ss_dssp STTCCTTHHHHHHHHHHHHHCCSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHC
T ss_pred ccCccchhhHHHHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEchhhcC
Confidence 11122 22233445555556689999999999999999999999999999999854
|
| >d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein C1556.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=99.17 E-value=1.3e-11 Score=110.92 Aligned_cols=47 Identities=19% Similarity=0.270 Sum_probs=43.5
Q ss_pred cccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEecccc
Q psy1056 25 FIRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74 (590)
Q Consensus 25 m~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Di 74 (590)
..++++++++++|+.+|+++|.+++++++||+|++ ++++|++|.+|+
T Consensus 10 ~~~~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd~~---~~~vG~it~~Dl 56 (153)
T d2ooxe2 10 TWSNLATASMETKVYDVIKMLAEKNISAVPIVNSE---GTLLNVYESVDV 56 (153)
T ss_dssp BCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEECGG---GBEEEEEEHHHH
T ss_pred CCCCCeEEeCcCcHHHHHHHHHHcCcceEeeeccc---ceEEEEEEeeee
Confidence 35689999999999999999999999999999987 899999999964
|
| >d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein C1556.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=99.07 E-value=6.7e-11 Score=108.82 Aligned_cols=54 Identities=11% Similarity=0.150 Sum_probs=45.8
Q ss_pred hcccCccc--cCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEecccc
Q psy1056 19 KKYKHGFI--RDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRDV 74 (590)
Q Consensus 19 k~~~~~m~--~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~Di 74 (590)
+.+.++|. .+++++++++|+.+|+++|.+++++++||+|++ .++++|++|..|+
T Consensus 20 ~~~~dvm~~s~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~~--~~~~vGiis~~Di 75 (179)
T d2ooxe1 20 RTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSE--ANKFAGLLTMADF 75 (179)
T ss_dssp SBHHHHSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETT--TTEEEEEECHHHH
T ss_pred CEeeeeCCCCCcEEEEECcchHHHHHHHHHHcCCCeEEEEeCC--CCeeEEEEeechH
Confidence 33445585 678999999999999999999999999999853 2799999999964
|
| >d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.02 E-value=1e-10 Score=105.37 Aligned_cols=54 Identities=15% Similarity=0.186 Sum_probs=45.2
Q ss_pred hhcccCcc--ccCCEEECCCCCHHHHHHHHHHcCccceeeccCCcccceeEEEEeccc
Q psy1056 18 VKKYKHGF--IRDPVCIAPSTTLGKVLQMKKQHGFCGFPVTENGKLGEKLLGIVTSRD 73 (590)
Q Consensus 18 vk~~~~~m--~~~~vtv~~~~ti~eA~~lM~~~~i~~lpVvd~~~~~~~lvGivT~~D 73 (590)
-+.+.++| ..+++++++++|+.+|+++|.+++++++||+|++ .++++|++|.+|
T Consensus 12 ~~t~~Dlm~~~~~vv~l~~~~sv~eA~~~l~~~~~~~~pVv~~~--~~~~vG~is~~D 67 (159)
T d2v8qe2 12 SHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSK--KQSFVGMLTITD 67 (159)
T ss_dssp HSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETT--TTEEEEEEEHHH
T ss_pred CCEEEeECCCCCceEEEcCCCcHHHHHHHHHHcCCCceeEEECC--CCcEEEEEEHHH
Confidence 34444558 4577899999999999999999999999999753 279999999995
|
| >d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme A [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Lactococcus lactis, isozyme A [TaxId: 1358]
Probab=98.93 E-value=1.7e-09 Score=108.38 Aligned_cols=165 Identities=15% Similarity=0.144 Sum_probs=108.5
Q ss_pred hHHHHHHHHHHcC-CcEEEEecCCC----------chhhHHHHHHHHHHhCCCceEEeccccCc--H----HHHHHHHCC
Q psy1056 330 ADKNRLKLLSQAG-VDVVILDSSQG----------NSIYQIEMIKFIKKEYPDMQVIGGNVLFG--Y----QPRATLLNF 392 (590)
Q Consensus 330 ~~~e~~~~li~~g-ad~i~V~~~~G----------~~~~~l~~i~~i~~~~~~vpvi~g~v~s~--~----~a~~l~~~G 392 (590)
+..+.+..+.+++ ++++.++.+-. +...+.+.++++++.. +.|+++|-.... . .++.+.+.|
T Consensus 107 ~~~~~~~~~~~~~~ad~ielNiscPn~~~~~~~~~~~~~~~~~~~~v~~~~-~~pv~vKl~p~~~~~~~~~~~~~~~~~~ 185 (311)
T d1juba_ 107 ENIAMLKKIQESDFSGITELNLSCPNVPGEPQLAYDFEATEKLLKEVFTFF-TKPLGVKLPPYFDLVHFDIMAEILNQFP 185 (311)
T ss_dssp HHHHHHHHHHHSCCCSEEEEESCCCCSSSCCCGGGCHHHHHHHHHHHTTTC-CSCEEEEECCCCSHHHHHHHHHHHTTSC
T ss_pred hhHHHHHHHhhccccceeeeccccccccccccccccHHHHHHHHHHhhccc-ccceeecccccchhhHHHHHHHHHHhhc
Confidence 3445666667765 78988886421 1133456777777766 789998866532 1 244556688
Q ss_pred CCEEEEccc------ccccC--------CCcccc-c--cchhHHHHHHHHHhcC--CCcEEecCCCCCHHHHHHHHHcCC
Q psy1056 393 IYQIEMIKF------IKKEY--------PDMQVI-G--RNGTAVYRVAEYASRR--GVPVIADGGVQSVGHVMKALALGA 453 (590)
Q Consensus 393 vd~i~v~~~------~~~~~--------~~~~~~-g--~~~~~l~~~~~~~~~~--~v~iia~GGi~~~~di~kalalGA 453 (590)
++++..... ..... .+..|. | +.+.++..+....+.. ++|||++|||+|+.|+.+.+++||
T Consensus 186 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~sg~~l~~~al~~i~~i~~~~~~~~~Iig~GGI~s~~Da~~~i~aGA 265 (311)
T d1juba_ 186 LTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGA 265 (311)
T ss_dssp CCEEEECCCEEEEECEETTTTEESCSGGGGEEEEESGGGHHHHHHHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHHTC
T ss_pred cceEeccccccccccccccccccccccccccCCccccccCchHHHHHHHHHHhcCCCeeEEecCCcCCHHHHHHHHHcCC
Confidence 888854100 00000 011111 1 1233454555554433 499999999999999999999999
Q ss_pred CEEEECccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecccceeEEeeCCchhchH
Q psy1056 454 STAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFL 533 (590)
Q Consensus 454 ~~v~~g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~~~~~ 533 (590)
|+|++++.|. |+| -+++
T Consensus 266 ~~Vql~tal~-------------------~~G--------------------------------------------p~~i 282 (311)
T d1juba_ 266 TMLQIGTALH-------------------KEG--------------------------------------------PAIF 282 (311)
T ss_dssp SEEEECHHHH-------------------HHC--------------------------------------------THHH
T ss_pred CceeeeHhhH-------------------hcC--------------------------------------------hHHH
Confidence 9999999772 111 1248
Q ss_pred HHHHhhhhhhCcccCcCcHHHHHHh
Q psy1056 534 PYLQCGLKHGCQDIGAKSLSNLRAM 558 (590)
Q Consensus 534 ~~~~~~l~~~m~~~G~~~i~~l~~~ 558 (590)
..+..+|+..|...|++|++||+-+
T Consensus 283 ~~i~~~L~~~m~~~G~~si~e~~G~ 307 (311)
T d1juba_ 283 DRIIKELEEIMNQKGYQSIADFHGK 307 (311)
T ss_dssp HHHHHHHHHHHHHHTCCSGGGTTTC
T ss_pred HHHHHHHHHHHHHcCCCCHHHhcCc
Confidence 8899999999999999999999865
|
| >d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Chloride channel protein 5, ClC-5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.93 E-value=4.7e-10 Score=102.12 Aligned_cols=47 Identities=28% Similarity=0.298 Sum_probs=41.2
Q ss_pred cccccccccc---hHHHHHHHHHhccccccccccccCceeeEEeeCCCCCCeEEEEEecchhh
Q psy1056 179 MQVIGGNVVT---TDQAKNLIDAGVDGLRVGSHGCHGFCGFPVTENGKLGEKLLGIVTSRDVD 238 (590)
Q Consensus 179 ~~im~~~~~~---~~~~~~a~~~m~~~~~v~~~~~~~~~~~pVvd~~~~~~~lvGivt~~Dl~ 238 (590)
.++|..++.+ ++++.+++++| .+++.+++||+++ |+++|+||.+|+.
T Consensus 103 ~~im~~~~~tv~~~~~l~~v~~~~---------~~~~~~~l~V~d~----g~lvGiIt~~Dil 152 (169)
T d2j9la1 103 RNILDLSPFTVTDLTPMEIVVDIF---------RKLGLRQCLVTHN----GRLLGIITKKDVL 152 (169)
T ss_dssp GGGEESSCCEEETTSBHHHHHHHH---------HHHTCSEEEEEET----TEEEEEEEHHHHH
T ss_pred hhhccCCCEEECCCCcHHHHHHHH---------HhcCceEEEEEEC----CEEEEEEEHHHHH
Confidence 3478776665 88999999999 9999999999886 8999999999997
|
| >d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydropyrimidine dehydrogenase, domain 4 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.90 E-value=6e-09 Score=104.33 Aligned_cols=132 Identities=17% Similarity=0.185 Sum_probs=86.8
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCC--------------chhhHHHHHHHHHHhCCCceEEec---cccCcH-HHHHHHHC
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQG--------------NSIYQIEMIKFIKKEYPDMQVIGG---NVLFGY-QPRATLLN 391 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G--------------~~~~~l~~i~~i~~~~~~vpvi~g---~v~s~~-~a~~l~~~ 391 (590)
+..+.++.+.+.|+|++.++.+-. +...+.+.++.+++.. +.|+++| +..+.. -++.+.++
T Consensus 117 d~~~~a~~~~~~gad~lelN~scPn~~~~~~~~~~~~~~~~~~~~i~~~v~~~~-~~pv~vKl~~~~~~~~~i~~~~~~~ 195 (312)
T d1gtea2 117 DWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQAV-QIPFFAKLTPNVTDIVSIARAAKEG 195 (312)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCCBCCCC-----SBGGGCHHHHHHHHHHHHHHC-SSCEEEEECSCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCeEeeccCCCCcccccccchhhhhhHHHHHHHHHHHhhcc-CCceeecccccchhHHHHHHHHHHh
Confidence 455677778888999999986421 1223456778888876 7899987 333333 36678899
Q ss_pred CCCEEEEccccc---------ccC--------CCcccc-cc--chhHHHHHHHHHhcC-CCcEEecCCCCCHHHHHHHHH
Q psy1056 392 FIYQIEMIKFIK---------KEY--------PDMQVI-GR--NGTAVYRVAEYASRR-GVPVIADGGVQSVGHVMKALA 450 (590)
Q Consensus 392 Gvd~i~v~~~~~---------~~~--------~~~~~~-g~--~~~~l~~~~~~~~~~-~v~iia~GGi~~~~di~kala 450 (590)
|+|+|.+..... ... .++.|. |. .+.++..+....+.. ++|||+.|||+|+.|+.++|+
T Consensus 196 g~~gi~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~gg~sG~~i~~~al~~v~~~~~~~~~ipIi~~GGI~~~~d~~~~l~ 275 (312)
T d1gtea2 196 GADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVTTIARALPGFPILATGGIDSAESGLQFLH 275 (312)
T ss_dssp TCSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCCEEEESGGGHHHHHHHHHHHHHHSTTCCEEEESSCCSHHHHHHHHH
T ss_pred cccceEEEeecccccccccccccccccccccccccccccCcCcchhhHHHHHHHHHHcCCCcEEEEcCCCCHHHHHHHHH
Confidence 999997611100 000 001111 11 223333344333333 599999999999999999999
Q ss_pred cCCCEEEECccc
Q psy1056 451 LGASTAMMGSLL 462 (590)
Q Consensus 451 lGA~~v~~g~~l 462 (590)
+|||+|++|+.|
T Consensus 276 aGA~~Vqv~ta~ 287 (312)
T d1gtea2 276 SGASVLQVCSAV 287 (312)
T ss_dssp TTCSEEEESHHH
T ss_pred cCCCeeEECHhh
Confidence 999999999977
|
| >d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Hypothetical protein HI0047 species: Haemophilus influenzae [TaxId: 727]
Probab=98.87 E-value=1.2e-08 Score=95.27 Aligned_cols=106 Identities=16% Similarity=0.212 Sum_probs=91.9
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCC
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPD 408 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~ 408 (590)
++....++.+.+.|++.+.|..... ...+.++.+++++|++.+.+|.|.+.+++++++++|++++ ||++...
T Consensus 26 ~~~~~~~~al~~~Gi~~iEitl~~~---~a~~~I~~l~~~~p~~~vGaGTV~~~~~~~~a~~aGa~Fi-vSP~~~~---- 97 (212)
T d1vhca_ 26 DDILPLADTLAKNGLSVAEITFRSE---AAADAIRLLRANRPDFLIAAGTVLTAEQVVLAKSSGADFV-VTPGLNP---- 97 (212)
T ss_dssp GGHHHHHHHHHHTTCCEEEEETTST---THHHHHHHHHHHCTTCEEEEESCCSHHHHHHHHHHTCSEE-ECSSCCH----
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCh---hHHHHHHHHHhcCCCceEeeeecccHHHHHHHHhhCCcEE-ECCCCCH----
Confidence 3566788999999999999987643 4578999999999999999999999999999999999999 5554332
Q ss_pred ccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEE
Q psy1056 409 MQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTA 456 (590)
Q Consensus 409 ~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v 456 (590)
++.+.|.+.++|.|. |+.|+.|+..|+.+||+.|
T Consensus 98 ------------~v~~~a~~~~i~~iP--Gv~TpsEi~~A~~~G~~~v 131 (212)
T d1vhca_ 98 ------------KIVKLCQDLNFPITP--GVNNPMAIEIALEMGISAV 131 (212)
T ss_dssp ------------HHHHHHHHTTCCEEC--EECSHHHHHHHHHTTCCEE
T ss_pred ------------HHHHHHHhcCCCccC--CcCCHHHHHHHHHCCCCEE
Confidence 466777778899999 9999999999999999999
|
| >d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Escherichia coli [TaxId: 562]
Probab=98.87 E-value=1.2e-08 Score=95.31 Aligned_cols=106 Identities=22% Similarity=0.219 Sum_probs=92.6
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCC
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPD 408 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~ 408 (590)
++..+.++.+++.|+..+.|..... ..++.|+.+++++|++.+.+|.|.+.+++++++++|++++ ||++..
T Consensus 27 ~~a~~~~~al~~~Gi~~iEitl~tp---~a~~~I~~l~~~~p~~~vGaGTV~~~~~~~~a~~aGa~Fi-vSP~~~----- 97 (213)
T d1wbha1 27 EHAVPMAKALVAGGVRVLNVTLRTE---CAVDAIRAIAKEVPEAIVGAGTVLNPQQLAEVTEAGAQFA-ISPGLT----- 97 (213)
T ss_dssp GGHHHHHHHHHHTTCCEEEEESCST---THHHHHHHHHHHCTTSEEEEESCCSHHHHHHHHHHTCSCE-EESSCC-----
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCh---hHHHHHHHHHHHCCCCeeeccccccHHHHHHHHHCCCcEE-ECCCCC-----
Confidence 4567899999999999999987543 4588999999999999999999999999999999999999 555433
Q ss_pred ccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEE
Q psy1056 409 MQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTA 456 (590)
Q Consensus 409 ~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v 456 (590)
.++.+++.+.++|+|. |+.|+.|+..|+.+||+.+
T Consensus 98 -----------~~v~~~a~~~~i~~iP--Gv~TpsEi~~A~~~G~~~v 132 (213)
T d1wbha1 98 -----------EPLLKAATEGTIPLIP--GISTVSELMLGMDYGLKEF 132 (213)
T ss_dssp -----------HHHHHHHHHSSSCEEE--EESSHHHHHHHHHTTCCEE
T ss_pred -----------HHHHHHHHhcCCCccC--CcCCHHHHHHHHHCCCCEE
Confidence 2466777778899999 9999999999999999999
|
| >d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Lactococcus lactis, isozyme B [TaxId: 1358]
Probab=98.87 E-value=2.2e-08 Score=99.87 Aligned_cols=164 Identities=17% Similarity=0.111 Sum_probs=107.4
Q ss_pred HHHHHHHHHH-cCCcEEEEecCCC-----------chhhHHHHHHHHHHhCCCceEEecc---cc-CcHHHHHHHHCCCC
Q psy1056 331 DKNRLKLLSQ-AGVDVVILDSSQG-----------NSIYQIEMIKFIKKEYPDMQVIGGN---VL-FGYQPRATLLNFIY 394 (590)
Q Consensus 331 ~~e~~~~li~-~gad~i~V~~~~G-----------~~~~~l~~i~~i~~~~~~vpvi~g~---v~-s~~~a~~l~~~Gvd 394 (590)
..+.++.+.+ +|++.+.++.+-. +.......+..++... +.|+.+|- +. ..+-++.+.++|++
T Consensus 113 ~~~~~~~~~~~~g~d~ielN~~cP~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~p~~vkl~~~~~~~~~~a~~~~~~~~~ 191 (311)
T d1ep3a_ 113 YVAVCAKIGDAANVKAIELNISCPNVKHGGQAFGTDPEVAAALVKACKAVS-KVPLYVKLSPNVTDIVPIAKAVEAAGAD 191 (311)
T ss_dssp HHHHHHHHTTSTTEEEEEEECCSEEGGGTTEEGGGCHHHHHHHHHHHHHHC-SSCEEEEECSCSSCSHHHHHHHHHTTCS
T ss_pred HHHHHHHHhhcccccccccccCCCcccccccccccCHHHHHHHHHHHHhcc-CCCeeeeecccccchHHHHHHHHHhhhh
Confidence 3444555544 4888888876321 1122334455566655 67777652 22 45667788899999
Q ss_pred EEEEcccccccC------C----Ccccc--cc--chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECc
Q psy1056 395 QIEMIKFIKKEY------P----DMQVI--GR--NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGS 460 (590)
Q Consensus 395 ~i~v~~~~~~~~------~----~~~~~--g~--~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~ 460 (590)
++.+........ . +..++ |. ...++..+....+..++|||+.|||.|+.|+.+.+.+|||+||+|+
T Consensus 192 ~~~~~n~~~~~~~~~~~~~~~~~~~~~g~sG~~i~~~~l~~i~~i~~~~~ipIig~GGI~s~~Da~~~i~~GAd~V~ig~ 271 (311)
T d1ep3a_ 192 GLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQVAQDVDIPIIGMGGVANAQDVLEMYMAGASAVAVGT 271 (311)
T ss_dssp EEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHHHHHHHHHHHTTCSSCEEECSSCCSHHHHHHHHHHTCSEEEECT
T ss_pred eeEEEeeccccccccccccccccccCCCCCCCcccchhHHHHHHHhhhcceeEEEeCCcCCHHHHHHHHHcCCCEEEecH
Confidence 997621111000 0 00010 11 2334555566556668999999999999999999999999999999
Q ss_pred cccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecccceeEEeeCCchhchHHHHHhhh
Q psy1056 461 LLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCGL 540 (590)
Q Consensus 461 ~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~~~~~~~~~~~l 540 (590)
.+. .+ | -++.++..+|
T Consensus 272 ~~~-----------------------------~~-----------------------------P------~i~~~I~~~L 287 (311)
T d1ep3a_ 272 ANF-----------------------------AD-----------------------------P------FVCPKIIDKL 287 (311)
T ss_dssp HHH-----------------------------HC-----------------------------T------THHHHHHHHH
T ss_pred HHH-----------------------------cC-----------------------------C------hHHHHHHHHH
Confidence 661 00 0 1367888899
Q ss_pred hhhCcccCcCcHHHHHHhh
Q psy1056 541 KHGCQDIGAKSLSNLRAMM 559 (590)
Q Consensus 541 ~~~m~~~G~~~i~~l~~~~ 559 (590)
...|...|..+++|++.++
T Consensus 288 ~~~m~~~g~~si~e~~g~~ 306 (311)
T d1ep3a_ 288 PELMDQYRIESLESLIQEV 306 (311)
T ss_dssp HHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHH
Confidence 9999999999999999874
|
| >d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase, central and FMN domains {Azospirillum brasilense [TaxId: 192]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Alpha subunit of glutamate synthase, central and FMN domains species: Azospirillum brasilense [TaxId: 192]
Probab=98.86 E-value=1.5e-09 Score=117.78 Aligned_cols=162 Identities=17% Similarity=0.158 Sum_probs=114.0
Q ss_pred hhHHHHHHHHHHhCCCceEEecccc---CcHHHHHHHHCCCCEEEEccc---ccccCC-Ccccccc-chhHHHHHHHHHh
Q psy1056 356 IYQIEMIKFIKKEYPDMQVIGGNVL---FGYQPRATLLNFIYQIEMIKF---IKKEYP-DMQVIGR-NGTAVYRVAEYAS 427 (590)
Q Consensus 356 ~~~l~~i~~i~~~~~~vpvi~g~v~---s~~~a~~l~~~Gvd~i~v~~~---~~~~~~-~~~~~g~-~~~~l~~~~~~~~ 427 (590)
+.+.+.+..+|+..++.||.+|=+. -...+....++|+|+|-|+-. |+.... .....|. ...++.++.+++.
T Consensus 556 edL~~~I~~Lr~~~~~~pv~vKl~~~~~~~~i~~~v~ka~~D~I~IdG~eGGTGAap~~~~d~~GlP~~~~l~~~~~~L~ 635 (771)
T d1ea0a2 556 EDLAQLIYDLKQINPDAKVTVKLVSRSGIGTIAAGVAKANADIILISGNSGGTGASPQTSIKFAGLPWEMGLSEVHQVLT 635 (771)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEEECCTTHHHHHHHHHHTTCSEEEEECTTCCCSSEETTHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCEEEEECCcCcHHHHHHHHHhcCCCEEEEecCCCccccccHHHhhcCCcCHHHHHHHHHHHHH
Confidence 5567889999998888999988655 234455567899999977221 111000 0223577 6677888887775
Q ss_pred cC----CCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCC-----------CCCCCceEeecCeeeeeeeccccHHHH
Q psy1056 428 RR----GVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGT-----------SEAPGEYFFSDGVRLKKYRGMGSLEAM 492 (590)
Q Consensus 428 ~~----~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~-----------~es~~~~~~~~g~~~k~~~g~~s~~a~ 492 (590)
.. .+.+|++||++||.|++||++||||+|.+|+.++-+ .+||.-+-+++.+..+.+-+
T Consensus 636 ~~glr~~V~l~a~Ggl~t~~Dv~ka~aLGAD~v~~gt~~m~alGCi~~r~Ch~~~CP~GIaTqd~~lr~~~~~------- 708 (771)
T d1ea0a2 636 LNRLRHRVRLRTDGGLKTGRDIVIAAMLGAEEFGIGTASLIAMGCIMVRQCHSNTCPVGVCVQDDKLRQKFVG------- 708 (771)
T ss_dssp TTTCTTTSEEEEESSCCSHHHHHHHHHTTCSEEECCHHHHHHHTCCCCCCTTTTCCTTSSSCCCTTGGGSCCC-------
T ss_pred HcCCCCceEEEEeCCCCCHHHHHHHHHhCCCchHHhHHHHHHhhCHHhhhccCCCCCCeeecCCHHHHhhccC-------
Confidence 54 399999999999999999999999999999766432 24554443333322211111
Q ss_pred hcccCCCcccchhhhccccceeecccceeEEeeCCchhchHHHHHhhhhhhCcccCcCcHHHHH
Q psy1056 493 SRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLR 556 (590)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~~~~~~~~~~~l~~~m~~~G~~~i~~l~ 556 (590)
....|.+++..+..++|..|.-+|.+++.||.
T Consensus 709 --------------------------------~~~~v~n~~~~~~~e~~~~~~~~G~~s~~~lv 740 (771)
T d1ea0a2 709 --------------------------------TPEKVVNLFTFLAEEVREILAGLGFRSLNEVI 740 (771)
T ss_dssp --------------------------------CHHHHHHHHHHHHHHHHHHHHHHTCSCSGGGT
T ss_pred --------------------------------cHHHHHHHHHHHHHHHHHHHHHHcCCCHHHhc
Confidence 11247888999999999999999999999984
|
| >d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase, central and FMN domains {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Alpha subunit of glutamate synthase, central and FMN domains species: Synechocystis sp. [TaxId: 1143]
Probab=98.85 E-value=7.6e-10 Score=120.57 Aligned_cols=163 Identities=18% Similarity=0.183 Sum_probs=112.7
Q ss_pred hhHHHHHHHHHHhCCCceEEecccc---CcHHHHHHHHCCCCEEEEccccccc-C-C--Ccccccc-chhHHHHHHHHHh
Q psy1056 356 IYQIEMIKFIKKEYPDMQVIGGNVL---FGYQPRATLLNFIYQIEMIKFIKKE-Y-P--DMQVIGR-NGTAVYRVAEYAS 427 (590)
Q Consensus 356 ~~~l~~i~~i~~~~~~vpvi~g~v~---s~~~a~~l~~~Gvd~i~v~~~~~~~-~-~--~~~~~g~-~~~~l~~~~~~~~ 427 (590)
+.+.+.|..+|+..++.||.+|=+. -...+.-+.++|+|+|-++-..+-. . + .....|. ....|.++.+++.
T Consensus 583 edL~q~I~~Lr~~~~~~pv~vKl~~~~g~~~ia~~vaka~aD~I~IdG~eGGTGAap~~~~~~~GlP~~~gl~~a~~~L~ 662 (809)
T d1ofda2 583 EDLAQLIYDLHQINPEAQVSVKLVAEIGIGTIAAGVAKANADIIQISGHDGGTGASPLSSIKHAGSPWELGVTEVHRVLM 662 (809)
T ss_dssp HHHHHHHHHHHHHCTTSEEEEEEECSTTHHHHHHHHHHTTCSEEEEECTTCCCSSEEHHHHHHBCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCceEEEEeeecChHHHHHHHhhcCCCEEEEeCCCCccccccHHHHhcCCccHHHHHHHHHHHHH
Confidence 5678889999998888899877553 3445555668999999763211100 0 0 0123466 6667777777665
Q ss_pred cC----CCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCCC-----------CCCCceEeecCeeeeeeeccccHHHH
Q psy1056 428 RR----GVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTS-----------EAPGEYFFSDGVRLKKYRGMGSLEAM 492 (590)
Q Consensus 428 ~~----~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~~-----------es~~~~~~~~g~~~k~~~g~~s~~a~ 492 (590)
.. .+.+|+|||++||.|++||++||||+|.+|+.++-+. +||.-+-++|.+..+.|.|
T Consensus 663 ~~glR~~V~Lia~Ggl~t~~Dv~ka~aLGAD~v~~gt~~l~alGCi~~r~Ch~n~CP~GIaTqd~~l~~~~~~------- 735 (809)
T d1ofda2 663 ENQLRDRVLLRADGGLKTGWDVVMAALMGAEEYGFGSIAMIAEGCIMARVCHTNNCPVGVATQQERLRQRFKG------- 735 (809)
T ss_dssp HTTCGGGCEEEEESSCCSHHHHHHHHHTTCSEEECSHHHHHHTTCCCCCCGGGTCCTTSSSCCCHHHHTTCCC-------
T ss_pred HcCCCCceEEEEeCCCCCHHHHHHHHHhCCCchhHhHHHHHHHHCHHhHhhCCCCCCCcccCCCHHHHhhCcC-------
Confidence 44 3999999999999999999999999999997664322 4453333322222211111
Q ss_pred hcccCCCcccchhhhccccceeecccceeEEeeCCchhchHHHHHhhhhhhCcccCcCcHHHHHH
Q psy1056 493 SRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCGLKHGCQDIGAKSLSNLRA 557 (590)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~~~~~~~~~~~l~~~m~~~G~~~i~~l~~ 557 (590)
....|.+++..+..++|..|..+|.+++.||..
T Consensus 736 --------------------------------~~~~v~n~~~~~~~e~~~~~a~~G~~s~~elvG 768 (809)
T d1ofda2 736 --------------------------------VPGQVVNFFYFIAEEVRSLLAHLGYRSLDDIIG 768 (809)
T ss_dssp --------------------------------CHHHHHHHHHHHHHHHHHHHHHHTCSCGGGTTT
T ss_pred --------------------------------cHHHHHHHHHHHHHHHHHHHHHHcCCCHHHhcC
Confidence 112488899999999999999999999999843
|
| >d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Pseudomonas putida [TaxId: 303]
Probab=98.84 E-value=1e-08 Score=95.76 Aligned_cols=107 Identities=17% Similarity=0.185 Sum_probs=93.0
Q ss_pred chhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCC
Q psy1056 328 READKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYP 407 (590)
Q Consensus 328 ~~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~ 407 (590)
.++..+.++.+++.|+..+.|..... ...+.++.+++++|++.+.+|.|.+.+++++++++|++++ |+++..
T Consensus 28 ~~~a~~~~~al~~~Gi~~iEitl~~p---~a~~~i~~l~~~~p~~~vGaGTV~~~~~~~~a~~aGa~Fi-vsP~~~---- 99 (216)
T d1mxsa_ 28 EEDILPLADALAAGGIRTLEVTLRSQ---HGLKAIQVLREQRPELCVGAGTVLDRSMFAAVEAAGAQFV-VTPGIT---- 99 (216)
T ss_dssp GGGHHHHHHHHHHTTCCEEEEESSST---HHHHHHHHHHHHCTTSEEEEECCCSHHHHHHHHHHTCSSE-ECSSCC----
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCCh---hHHHHHHHHHHhCCCcceeeeeeecHHHHHHHHhCCCCEE-ECCCCc----
Confidence 34667899999999999999987543 4578999999999999999999999999999999999999 554433
Q ss_pred CccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEE
Q psy1056 408 DMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTA 456 (590)
Q Consensus 408 ~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v 456 (590)
.++.+++.+.++|.|. |+.|+.|+.+|+.+||+.|
T Consensus 100 ------------~~v~~~a~~~~i~~iP--Gv~TpsEi~~A~~~G~~~v 134 (216)
T d1mxsa_ 100 ------------EDILEAGVDSEIPLLP--GISTPSEIMMGYALGYRRF 134 (216)
T ss_dssp ------------HHHHHHHHHCSSCEEC--EECSHHHHHHHHTTTCCEE
T ss_pred ------------HHHHHHHHhcCCCccC--CcCCHHHHHHHHHCCCCEE
Confidence 2466777788999999 9999999999999999999
|
| >d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=98.60 E-value=1.2e-07 Score=87.74 Aligned_cols=108 Identities=18% Similarity=0.188 Sum_probs=88.0
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHh-CCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCC
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKE-YPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYP 407 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~-~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~ 407 (590)
++....++.+++.|++.+.|..... ...+.++.+++. .|++.+.+|.|.+.+++++++++|++++ |+++...
T Consensus 21 ~~a~~~~~al~~~Gi~~iEitlr~p---~a~~~i~~l~~~~~~~~~vGaGTV~~~~~~~~a~~aGa~fi-vsP~~~~--- 93 (202)
T d1wa3a1 21 EEAKEKALAVFEGGVHLIEITFTVP---DADTVIKELSFLKEKGAIIGAGTVTSVEQCRKAVESGAEFI-VSPHLDE--- 93 (202)
T ss_dssp HHHHHHHHHHHHTTCCEEEEETTST---THHHHHHHTHHHHHTTCEEEEESCCSHHHHHHHHHHTCSEE-ECSSCCH---
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCc---cHHHHHHHHHHhcCCCcEEEecccccHHHHHHHHhhcccEE-eCCCCcH---
Confidence 4566789999999999999977643 346777777754 3688888999999999999999999999 5544332
Q ss_pred CccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEE
Q psy1056 408 DMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMM 458 (590)
Q Consensus 408 ~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~ 458 (590)
++.+++.+.++|+|. |+.|+.++.+|+.+||+.+-+
T Consensus 94 -------------~v~~~~~~~~i~~iP--Gv~TpsEi~~A~~~G~~~lK~ 129 (202)
T d1wa3a1 94 -------------EISQFCKEKGVFYMP--GVMTPTELVKAMKLGHTILKL 129 (202)
T ss_dssp -------------HHHHHHHHHTCEEEC--EECSHHHHHHHHHTTCCEEEE
T ss_pred -------------HHHHHHHhcCCceeC--CcCcHHHHHHHHHCCCCEEEe
Confidence 456666667899999 999999999999999999944
|
| >d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
Probab=98.56 E-value=6.1e-08 Score=99.24 Aligned_cols=73 Identities=41% Similarity=0.663 Sum_probs=68.1
Q ss_pred CcchHHHHHHHHHcCCcEEEEcCCCCchHHHHHHHHHhhhcCCCcccccccccchHHHHHHHHHhcccccccc
Q psy1056 135 READKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGLRVGS 207 (590)
Q Consensus 135 ~~d~~~~~~~l~~~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~im~~~~~~~~~~~~a~~~m~~~~~v~~ 207 (590)
..++.+++..|+++|+|++++|++|+|...+.+.+++++..+|..+++..|+.|.+...++++..||+||||+
T Consensus 149 ~~~~~~ra~~L~~aG~D~ivID~AhG~s~~~~~~i~~ik~~~~~v~vIaGNV~T~e~a~~L~~~GaD~VkVGi 221 (388)
T d1eepa_ 149 DIDTIERVEELVKAHVDILVIDSAHGHSTRIIELIKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLKVGI 221 (388)
T ss_dssp CTTHHHHHHHHHHTTCSEEEECCSCCSSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHTTTCSEEEECS
T ss_pred CHHHHHHHHHHHhhccceeeeeccccchHHHHHHHHHHHHHCCCCceeeccccCHHHHHHHHhcCCCeeeecc
Confidence 3457899999999999999999999999999999999998899999999999999999999999999999996
|
| >d1d3ga_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.25 E-value=2.6e-06 Score=86.55 Aligned_cols=163 Identities=12% Similarity=0.041 Sum_probs=101.9
Q ss_pred HHHHHHHHHcCCcEEEEecCCCchh---------hHHHHHHH---HHHhC---CCceEEecccc--Cc----HHHHHHHH
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGNSI---------YQIEMIKF---IKKEY---PDMQVIGGNVL--FG----YQPRATLL 390 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~~~---------~~l~~i~~---i~~~~---~~vpvi~g~v~--s~----~~a~~l~~ 390 (590)
........+.++|++.++.+-.+.. .....+.. ..... .+.|+++|-.. +. +-++.+.+
T Consensus 166 ~~~~~~~~~~~ad~lelNiScPn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~vKlsP~~~~~~i~~~a~~~~~ 245 (367)
T d1d3ga_ 166 YAEGVRVLGPLADYLVVNVSSPNTAGLRSLQGKAELRRLLTKVLQERDGLRRVHRPAVLVKIAPDLTSQDKEDIASVVKE 245 (367)
T ss_dssp HHHHHHHHGGGCSEEEEESCCTTSTTC----CHHHHHHHHHHHHHHHHTSCGGGCCEEEEEECSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcccccccccccccccccccccccchhhhHHHHHHHhhhhcccccCCccccccCcccchhhhhhhHHHHHh
Confidence 3445556677999999987542221 11122222 22221 14688887554 22 23667788
Q ss_pred CCCCEEEEcccccccC-----------CCccccccchhH---HHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEE
Q psy1056 391 NFIYQIEMIKFIKKEY-----------PDMQVIGRNGTA---VYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTA 456 (590)
Q Consensus 391 ~Gvd~i~v~~~~~~~~-----------~~~~~~g~~~~~---l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v 456 (590)
+|++++...+...... .++.|-...+.+ +..+++.. ..++|||+.|||.|+.|+.+-+.+|||+|
T Consensus 246 ~g~~gi~~~nt~~~~~~~~~~~~~~~~gg~sG~~~~~i~l~~v~~v~~~~-~~~ipIig~GGI~s~~Da~e~i~aGAs~V 324 (367)
T d1d3ga_ 246 LGIDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYALT-QGRVPIIGVGGVSSGQDALEKIRAGASLV 324 (367)
T ss_dssp HTCCEEEECCCBSCCCTTCCCTTTTSSSEEEEGGGHHHHHHHHHHHHHHT-TTCSCEEEESSCCSHHHHHHHHHHTCSEE
T ss_pred hhhheeecccccccccccccccccccccccccccchhhhHHHHHHHHHHh-CCCccEEEECCCCCHHHHHHHHHcCCCHH
Confidence 9999996521111000 011111111222 33333332 23699999999999999999999999999
Q ss_pred EECccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecccceeEEeeCCchhchHHHH
Q psy1056 457 MMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYL 536 (590)
Q Consensus 457 ~~g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~~~~~~~~ 536 (590)
++++.+. |+| -+++..+
T Consensus 325 Qi~Ta~~-------------------~~G--------------------------------------------p~ii~~I 341 (367)
T d1d3ga_ 325 QLYTALT-------------------FWG--------------------------------------------PPVVGKV 341 (367)
T ss_dssp EESHHHH-------------------HHC--------------------------------------------THHHHHH
T ss_pred HhhHHHH-------------------hcC--------------------------------------------cHHHHHH
Confidence 9999762 122 1347889
Q ss_pred HhhhhhhCcccCcCcHHHHHHh
Q psy1056 537 QCGLKHGCQDIGAKSLSNLRAM 558 (590)
Q Consensus 537 ~~~l~~~m~~~G~~~i~~l~~~ 558 (590)
..+|+.-|.--|-.+++||+..
T Consensus 342 ~~~L~~~l~~~G~~si~dl~G~ 363 (367)
T d1d3ga_ 342 KRELEALLKEQGFGGVTDAIGA 363 (367)
T ss_dssp HHHHHHHHHHTTCSSHHHHTTG
T ss_pred HHHHHHHHHHcCCCCHHHhcCh
Confidence 9999999999999999999854
|
| >d1tv5a1 c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Plasmodium falciparum [TaxId: 5833]
Probab=98.21 E-value=2.1e-06 Score=88.47 Aligned_cols=114 Identities=18% Similarity=0.140 Sum_probs=75.5
Q ss_pred cHHHHHHHHCCCCEEEEcccccccCC---------CccccccchhHHHHHHHHHhcC--CCcEEecCCCCCHHHHHHHHH
Q psy1056 382 GYQPRATLLNFIYQIEMIKFIKKEYP---------DMQVIGRNGTAVYRVAEYASRR--GVPVIADGGVQSVGHVMKALA 450 (590)
Q Consensus 382 ~~~a~~l~~~Gvd~i~v~~~~~~~~~---------~~~~~g~~~~~l~~~~~~~~~~--~v~iia~GGi~~~~di~kala 450 (590)
.+.++.+.++|+|++.+.+.+..... |..|-.+.+.++..+.+..+.. ++|||+.|||.|+.|+.+-+.
T Consensus 283 ~~i~~~~~~~g~dgii~~Nt~~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~v~~~~~~~ipIIGvGGI~s~~Da~e~i~ 362 (409)
T d1tv5a1 283 KEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLDALEKIE 362 (409)
T ss_dssp HHHHHHHHHTTCSEEEECCCBSCCCCCGGGTTCCSEEEEHHHHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHH
T ss_pred HHHHHHHHhccccceecccccccccccccccccCCcccchhHHHHHHHHHHHHHHHcCCCceEEEECCCCCHHHHHHHHH
Confidence 45556677799999976333222110 0111111122233333333332 499999999999999999999
Q ss_pred cCCCEEEECccccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecccceeEEeeCCchh
Q psy1056 451 LGASTAMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVL 530 (590)
Q Consensus 451 lGA~~v~~g~~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~~ 530 (590)
+||++|++++.|. |.|.
T Consensus 363 AGAs~VQv~T~li-------------------~~Gp-------------------------------------------- 379 (409)
T d1tv5a1 363 AGASVCQLYSCLV-------------------FNGM-------------------------------------------- 379 (409)
T ss_dssp TTEEEEEESHHHH-------------------HHGG--------------------------------------------
T ss_pred cCCCHHhhhhHHH-------------------hcCh--------------------------------------------
Confidence 9999999999772 2221
Q ss_pred chHHHHHhhhhhhCcccCcCcHHHHHHh
Q psy1056 531 RFLPYLQCGLKHGCQDIGAKSLSNLRAM 558 (590)
Q Consensus 531 ~~~~~~~~~l~~~m~~~G~~~i~~l~~~ 558 (590)
.++..+..+|..-|.--|-.+|+|++.+
T Consensus 380 ~~v~~I~~~L~~~l~~~g~~~i~e~iG~ 407 (409)
T d1tv5a1 380 KSAVQIKRELNHLLYQRGYYNLKEAIGR 407 (409)
T ss_dssp GHHHHHHHHHHHHHHHHTCSSSGGGTTT
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHhcCC
Confidence 2377888888888888899999888643
|
| >d2b4ga1 c.1.4.1 (A:2-313) Dihydroorotate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=98.18 E-value=2e-06 Score=85.40 Aligned_cols=159 Identities=18% Similarity=0.080 Sum_probs=96.4
Q ss_pred HHHHHcCCcEEEEecCCCc----------hhhHHHHHHHHHHhCCCceEEeccccC--cHH----HHHHHHC-CCCEEEE
Q psy1056 336 KLLSQAGVDVVILDSSQGN----------SIYQIEMIKFIKKEYPDMQVIGGNVLF--GYQ----PRATLLN-FIYQIEM 398 (590)
Q Consensus 336 ~~li~~gad~i~V~~~~G~----------~~~~l~~i~~i~~~~~~vpvi~g~v~s--~~~----a~~l~~~-Gvd~i~v 398 (590)
....+.++|++.++.+-.+ ...+.+.++.+++.. +.|+++|--.. ... +..+.++ +++++..
T Consensus 114 ~~~~~~~ad~iElNiScPn~~~~~~~~~~~~~~~~i~~~v~~~~-~~pi~vKl~p~~~~~~~~~~~~~~~~~~~~~~i~~ 192 (312)
T d2b4ga1 114 VPITKEKGTILELNLSCPNVPGKPQVGYDFDTTRTYLQKVSEAY-GLPFGVKMPPYFDIAHFDMAAAVLNDFPLVKFITC 192 (312)
T ss_dssp HHHHHHHCCEEEEECCCCCSTTCCCGGGCHHHHHHHHHHHHHHH-CSCEEEEECCCCCHHHHHHHHHHHTTCTTEEEEEE
T ss_pred HHhhhhcccceeeccccCCcCcchhhhccHHHHHHHHHHhhccc-cccceeccccccchhHHHHHHHHHHhhhhhhhhhh
Confidence 3445678999999864211 122456677777665 67887765442 221 2222233 3333321
Q ss_pred --cc------cccccC---CCccc-ccc-----chhHHHHHHHHHhcC-CCcEEecCCCCCHHHHHHHHHcCCCEEEECc
Q psy1056 399 --IK------FIKKEY---PDMQV-IGR-----NGTAVYRVAEYASRR-GVPVIADGGVQSVGHVMKALALGASTAMMGS 460 (590)
Q Consensus 399 --~~------~~~~~~---~~~~~-~g~-----~~~~l~~~~~~~~~~-~v~iia~GGi~~~~di~kalalGA~~v~~g~ 460 (590)
+. ...+.. ....+ .|+ .+.++..+....+.. +.|||+.|||.++.|+.+.+.+||++|++++
T Consensus 193 ~nt~~~~~~~~~~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~~~~~~~~~~Iig~GGI~s~~Da~e~i~aGAs~Vqv~T 272 (312)
T d2b4ga1 193 VNSIGNGLVIDPANETVVIKPKQGFGGLGGKYVLPTALANVNAFFRRCPDKLVFGCGGVYSGEEAFLHILAGASMVQVGT 272 (312)
T ss_dssp CCCEEEEECEETTTTEESCCGGGGEEEEEEGGGHHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHHTEEEEEESH
T ss_pred cccccccccccccCCCccccccccccCcccccccchhhHHHHHHHHHcCCCceeecCCcCCHHHHHHHHHcCCChheeeh
Confidence 10 000000 00111 122 122344444443333 4789999999999999999999999999999
Q ss_pred cccCCCCCCCceEeecCeeeeeeeccccHHHHhcccCCCcccchhhhccccceeecccceeEEeeCCchhchHHHHHhhh
Q psy1056 461 LLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMSRKDGGAAAMDRYFHNEMDKLKVAQGVSGAIVDKGSVLRFLPYLQCGL 540 (590)
Q Consensus 461 ~l~~~~es~~~~~~~~g~~~k~~~g~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~~~~~~~~~~~l 540 (590)
.|. |+| -.+++.+..+|
T Consensus 273 al~-------------------~~G--------------------------------------------p~~i~~i~~~L 289 (312)
T d2b4ga1 273 ALH-------------------DEG--------------------------------------------PIIFARLNKEL 289 (312)
T ss_dssp HHH-------------------HHC--------------------------------------------TTHHHHHHHHH
T ss_pred hhH-------------------hcC--------------------------------------------cHHHHHHHHHH
Confidence 772 122 13488899999
Q ss_pred hhhCcccCcCcHHHHHHh
Q psy1056 541 KHGCQDIGAKSLSNLRAM 558 (590)
Q Consensus 541 ~~~m~~~G~~~i~~l~~~ 558 (590)
+.-|.--|..|++|++.+
T Consensus 290 ~~~l~~~G~~si~e~~G~ 307 (312)
T d2b4ga1 290 QEIMTNKGYKTLDEFRGR 307 (312)
T ss_dssp HHHHHHHTCCSGGGTTTC
T ss_pred HHHHHHcCCCCHHHHcCe
Confidence 999999999999999865
|
| >d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: ThiG-like family: ThiG-like domain: Thiazole biosynthesis protein ThiG species: Bacillus subtilis [TaxId: 1423]
Probab=98.16 E-value=2.6e-06 Score=78.85 Aligned_cols=103 Identities=18% Similarity=0.113 Sum_probs=73.6
Q ss_pred chhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCcccccc-chhHHHHHHHHHhcCCCc
Q psy1056 354 NSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVP 432 (590)
Q Consensus 354 ~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~ 432 (590)
+....++.-+.+.+. +..|+..--.++..|++|.++|+.+|-- -.... -+|-|+ ++..+..+.+. .++|
T Consensus 110 D~~etl~Aae~Lv~e--GF~VlpY~~~D~v~ak~Le~~Gc~avMP--lgsPI---GSg~Gl~n~~~l~~i~~~---~~vP 179 (251)
T d1xm3a_ 110 DPVETLKASEQLLEE--GFIVLPYTSDDVVLARKLEELGVHAIMP--GASPI---GSGQGILNPLNLSFIIEQ---AKVP 179 (251)
T ss_dssp CHHHHHHHHHHHHHT--TCCEEEEECSCHHHHHHHHHHTCSCBEE--CSSST---TCCCCCSCHHHHHHHHHH---CSSC
T ss_pred CHHHHHHHHHHHHhC--CcEEEEecCCCHHHHHHHHHcCChhHHH--hhhhh---hcCCCcCChHHHHHHHhc---CCcc
Confidence 344445555555554 3445555556889999999999998821 00111 123467 77777666654 4699
Q ss_pred EEecCCCCCHHHHHHHHHcCCCEEEECccccCCC
Q psy1056 433 VIADGGVQSVGHVMKALALGASTAMMGSLLAGTS 466 (590)
Q Consensus 433 iia~GGi~~~~di~kalalGA~~v~~g~~l~~~~ 466 (590)
||.|+||.+|.|++.|+.||||+|++.++++.+.
T Consensus 180 vIvDAGIG~pSdAa~AMElG~daVLvNTAIA~a~ 213 (251)
T d1xm3a_ 180 VIVDAGIGSPKDAAYAMELGADGVLLNTAVSGAD 213 (251)
T ss_dssp BEEESCCCSHHHHHHHHHTTCSEEEESHHHHTSS
T ss_pred EEEecCCCCHHHHHHHHHccCCEEEechhhhcCC
Confidence 9999999999999999999999999999997654
|
| >d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Salmonella typhimurium [TaxId: 90371]
Probab=98.14 E-value=5.8e-06 Score=79.64 Aligned_cols=135 Identities=16% Similarity=0.132 Sum_probs=88.4
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCC--------------------Cch-hhHHHHHHHHHHhCCCceEEec---c----cc
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQ--------------------GNS-IYQIEMIKFIKKEYPDMQVIGG---N----VL 380 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~--------------------G~~-~~~l~~i~~i~~~~~~vpvi~g---~----v~ 380 (590)
+...+.+..+.++|+|++.+-.+. |.. ..+.+.++.+++..+++|++.= | -+
T Consensus 31 ~~~~~~~~~l~~~GaDiiElGiPfSDP~aDGpvIq~a~~~al~~G~~~~~~~~~~~~~r~~~~~~pivlm~Y~N~i~~~G 110 (267)
T d1qopa_ 31 EQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIPIGLLMYANLVFNNG 110 (267)
T ss_dssp HHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSSSCEEEEECHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCcccccchHHHhhhhhcccccchhhhhhhhhhhhcccccccceEEEeeccchhhcC
Confidence 345678889999999999987432 222 3356778888888767888731 1 12
Q ss_pred CcHHHHHHHHCCCCEEEE--------------------------ccccccc--------CC---------Ccccccc-ch
Q psy1056 381 FGYQPRATLLNFIYQIEM--------------------------IKFIKKE--------YP---------DMQVIGR-NG 416 (590)
Q Consensus 381 s~~~a~~l~~~Gvd~i~v--------------------------~~~~~~~--------~~---------~~~~~g~-~~ 416 (590)
-..-++.+.++|+|++.+ ++.++.. .+ |.+|... ..
T Consensus 111 ~~~f~~~~~~~Gv~GliipDlP~ee~~~~~~~~~~~~l~~I~lvaPtt~~~Ri~~i~~~a~gFiY~vs~~GvTG~~~~~~ 190 (267)
T d1qopa_ 111 IDAFYARCEQVGVDSVLVADVPVEESAPFRQAALRHNIAPIFICPPNADDDLLRQVASYGRGYTYLLSRSGVTGAENRGA 190 (267)
T ss_dssp HHHHHHHHHHHTCCEEEETTCCGGGCHHHHHHHHHTTCEEECEECTTCCHHHHHHHHHHCCSCEEEESSSSCCCSSSCC-
T ss_pred chHHHHHHHhcCCCceeccchhhhhhHHHHHhhhccCceEEEEecccccHHHHHHHHhhCchhhhhhcccccCCcccccc
Confidence 345567888999999987 1111100 00 1222221 12
Q ss_pred hHHHHH-HHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 417 TAVYRV-AEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 417 ~~l~~~-~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
..+.+. ....+..++|++..+||+++.|+++++..|||+|++|++|.
T Consensus 191 ~~~~~~i~~ik~~t~~Pv~vGFGI~~~e~v~~~~~~~ADGvIVGSAiv 238 (267)
T d1qopa_ 191 LPLHHLIEKLKEYHAAPALQGFGISSPEQVSAAVRAGAAGAISGSAIV 238 (267)
T ss_dssp -CCHHHHHHHHHTTCCCEEEESSCCSHHHHHHHHHTTCSEEEECHHHH
T ss_pred hhHHHHHHHHhhhccCCceeecccCCHHHHHHHHhcCCCEEEECHHHH
Confidence 222232 22222347999999999999999999999999999999884
|
| >d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermotoga maritima [TaxId: 2336]
Probab=98.05 E-value=2.6e-05 Score=74.68 Aligned_cols=132 Identities=17% Similarity=0.209 Sum_probs=88.1
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCc---hhhHHHHHHHHHHhCCCceEEec-cccCcHHHHHHHHCCCCEEEE-------
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGN---SIYQIEMIKFIKKEYPDMQVIGG-NVLFGYQPRATLLNFIYQIEM------- 398 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~---~~~~l~~i~~i~~~~~~vpvi~g-~v~s~~~a~~l~~~Gvd~i~v------- 398 (590)
+..+.++.+.+.|++-+++-.-.+. .....+.++.+.+.. .+|+.+| ++-+.++++.+.++||+-|.+
T Consensus 31 dP~~~a~~~~~~g~dei~ivDld~~~~~~~~~~~~i~~i~~~~-~~pi~vgGGIr~~e~i~~~l~~Ga~kviigs~~~~n 109 (253)
T d1thfd_ 31 DPVELGKFYSEIGIDELVFLDITASVEKRKTMLELVEKVAEQI-DIPFTVGGGIHDFETASELILRGADKVSINTAAVEN 109 (253)
T ss_dssp CHHHHHHHHHHTTCCEEEEEESSCSSSHHHHHHHHHHHHHTTC-CSCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHHC
T ss_pred CHHHHHHHHHHcCCCEEEEEeecccccCcccHHHHHHHHHhcc-CccceeecccccchhhhhHHhcCCCEEEEChHHhhC
Confidence 4567888899999998887443332 223467777777766 7888754 555999999999999999977
Q ss_pred ------------------cccccccCCC----cccc-------------------------------cc-chhHHHHHHH
Q psy1056 399 ------------------IKFIKKEYPD----MQVI-------------------------------GR-NGTAVYRVAE 424 (590)
Q Consensus 399 ------------------~~~~~~~~~~----~~~~-------------------------------g~-~~~~l~~~~~ 424 (590)
++........ ..+| |. +---+..+..
T Consensus 110 ~~~l~~~~~~~G~~~iv~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~eii~tdI~~dGt~~G~d~~ll~~ 189 (253)
T d1thfd_ 110 PSLITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRF 189 (253)
T ss_dssp THHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHTTCSEEEEEETTTTTSCSCCCHHHHHH
T ss_pred hHHHHHHHHHcCCeeEEEeeeecccCCceeeeeeecccccchhHHHHHHHHHhccCCEEEEEEecccCccCCcccccccc
Confidence 0000000000 0011 11 0001111222
Q ss_pred HHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 425 YASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 425 ~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
.....++|+|++||+++..|+.+++.+|+++|.+|++|
T Consensus 190 i~~~~~~pvi~~GGv~s~~di~~l~~~g~~gvivgsal 227 (253)
T d1thfd_ 190 VRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAASVF 227 (253)
T ss_dssp HGGGCCSCEEEESCCCSHHHHHHHHHTTCSEEEESHHH
T ss_pred ccccccceEEEecCCCCHHHHHHHHHCCCCEEEEchHH
Confidence 33345799999999999999999999999999999998
|
| >d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermus thermophilus [TaxId: 274]
Probab=98.03 E-value=2.4e-05 Score=74.02 Aligned_cols=134 Identities=12% Similarity=0.085 Sum_probs=93.0
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEecccc-CcHHHHHHHHCCCCEEEE--c-------
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVL-FGYQPRATLLNFIYQIEM--I------- 399 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~-s~~~a~~l~~~Gvd~i~v--~------- 399 (590)
+..+.+....+.|+.++.|.+.+.+..|-++.+..+++.. ++|++.|+-. ++.+..++..+|||+|-+ .
T Consensus 66 dp~~~A~~y~~~GA~aiSVLTe~~~F~Gs~~dl~~v~~~~-~iPvLrKDFIid~~QI~ea~~~GADaVLLIaall~~~l~ 144 (254)
T d1vc4a_ 66 DPVEAALAYARGGARAVSVLTEPHRFGGSLLDLKRVREAV-DLPLLRKDFVVDPFMLEEARAFGASAALLIVALLGELTG 144 (254)
T ss_dssp CHHHHHHHHHHTTCSEEEEECCCSSSCCCHHHHHHHHHHC-CSCEEEESCCCSHHHHHHHHHTTCSEEEEEHHHHGGGHH
T ss_pred CHHHHHHHHHhcCCceEEEEcCcccccccHHHHHHHHHHc-CCCcccCCccccHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 3456788899999999999886655556677788888887 7999999877 999999999999999965 0
Q ss_pred ----------------ccccccCC----------Cccc-----cccchhHHHHHHHHHhc--CCCcEEecCCCCCHHHHH
Q psy1056 400 ----------------KFIKKEYP----------DMQV-----IGRNGTAVYRVAEYASR--RGVPVIADGGVQSVGHVM 446 (590)
Q Consensus 400 ----------------~~~~~~~~----------~~~~-----~g~~~~~l~~~~~~~~~--~~v~iia~GGi~~~~di~ 446 (590)
+++..+.. |... +.+....-..+.+.... .++.+|+++||.++.|+
T Consensus 145 ~l~~~A~~lgl~~LVEvh~~~El~~a~~~~a~iIGINnRdL~t~~vd~~~~~~l~~~i~~~~~~~i~IsESGI~~~~dv- 223 (254)
T d1vc4a_ 145 AYLEEARRLGLEALVEVHTERELEIALEAGAEVLGINNRDLATLHINLETAPRLGRLARKRGFGGVLVAESGYSRKEEL- 223 (254)
T ss_dssp HHHHHHHHHTCEEEEEECSHHHHHHHHHHTCSEEEEESBCTTTCCBCTTHHHHHHHHHHHTTCCSEEEEESCCCSHHHH-
T ss_pred HHHHHHHHhCCceEEEeccHHHHhhhhcCCCCEEEEeccchhhhhcchHHHHHhhhcccccCCCCEEEEccCCCCHHHH-
Confidence 00000000 1111 12211112233333333 25789999999999997
Q ss_pred HHHHcCCCEEEECccccCC
Q psy1056 447 KALALGASTAMMGSLLAGT 465 (590)
Q Consensus 447 kalalGA~~v~~g~~l~~~ 465 (590)
+.+..|+|+|.+|..|+.+
T Consensus 224 ~~l~~g~davLIGesLm~~ 242 (254)
T d1vc4a_ 224 KALEGLFDAVLIGTSLMRA 242 (254)
T ss_dssp HTTTTTCSEEEECHHHHTS
T ss_pred HHHHcCCCEEEEChhhcCC
Confidence 5568899999999988644
|
| >d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=98.02 E-value=1.9e-05 Score=74.61 Aligned_cols=122 Identities=14% Similarity=0.168 Sum_probs=84.3
Q ss_pred HHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccccc
Q psy1056 334 RLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIG 413 (590)
Q Consensus 334 ~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g 413 (590)
.+......|||++.+..+-=....+.+.++. ...+ ++.+++ +|-+.+++.++.++|++.|-+ +.|. ...+.
T Consensus 117 QI~ea~~~GADaiLLI~~~L~~~~l~~l~~~-a~~l-gl~~Lv-Evh~~~El~~a~~~~a~iIGI---NnRn---L~t~~ 187 (247)
T d1a53a_ 117 QIDDAYNLGADTVLLIVKILTERELESLLEY-ARSY-GMEPLI-EINDENDLDIALRIGARFIGI---NSRD---LETLE 187 (247)
T ss_dssp HHHHHHHHTCSEEEEEGGGSCHHHHHHHHHH-HHTT-TCCCEE-EECSHHHHHHHHHTTCSEEEE---ESBC---TTTCC
T ss_pred HHHHHHHhhcchhhhhhhhccHHHHHHHHHH-HHHH-hhhHHh-hcCCHHHHHHHHhCCCCeEee---eccC---hhhhh
Confidence 4555677899998876543222233344443 3444 555555 999999999999999998833 3444 33333
Q ss_pred cchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCC
Q psy1056 414 RNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGT 465 (590)
Q Consensus 414 ~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~ 465 (590)
+.......+...... ++.+|+.+||.++.|+.+...+|||+|.+|..|+..
T Consensus 188 vd~~~~~~L~~~ip~-~~~~IaESGI~t~~dv~~l~~~G~davLIGeaLmk~ 238 (247)
T d1a53a_ 188 INKENQRKLISMIPS-NVVKVAESGISERNEIEELRKLGVNAFLIGSSLMRN 238 (247)
T ss_dssp BCHHHHHHHHHHSCT-TSEEEEESCCCCHHHHHHHHHTTCCEEEECHHHHHC
T ss_pred hhhhHHHHHHhhCCC-CCeEEEecCCCCHHHHHHHHHCCCCEEEECHHHcCC
Confidence 333333344444433 689999999999999999999999999999988653
|
| >d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: NADPH dehydrogenase NamA species: Bacillus subtilis [TaxId: 1423]
Probab=98.01 E-value=2.4e-05 Score=78.14 Aligned_cols=131 Identities=16% Similarity=0.058 Sum_probs=86.3
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCc--------------------h----hhHHHHHHHHHHhCCCceEEecc-------
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGN--------------------S----IYQIEMIKFIKKEYPDMQVIGGN------- 378 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~--------------------~----~~~l~~i~~i~~~~~~vpvi~g~------- 378 (590)
...+.+..+.++|.|.+.|+.++|+ . ++.++.++.+++.. +-|++++=
T Consensus 144 ~f~~AA~ra~~AGfDGVEiH~ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~~Eiv~air~~~-~~~~~vr~~~~~~~~ 222 (337)
T d1z41a1 144 EFKQAAARAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVW-DGPLFVRVSASDYTD 222 (337)
T ss_dssp HHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHC-CSCEEEEEECCCCST
T ss_pred HHHHHHHHHHHcCCCeEEeeccCcceeeeecCCccccccccccchhhhhhhHHHHHHHHHhhhh-cccceEEeccccccc
Confidence 3445677888999999999975521 1 34578889999887 44555431
Q ss_pred -cc----CcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcC-
Q psy1056 379 -VL----FGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALG- 452 (590)
Q Consensus 379 -v~----s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalG- 452 (590)
.. ..+.++.|.++|+|++.++.......+....-|+.......+++ ..++|||+.|||.++.++.++|+-|
T Consensus 223 ~g~~~~~~~~~~~~l~~~g~d~~~~s~g~~~~~~~~~~~~~~~~~~~~ik~---~~~~pvi~~G~i~~~~~ae~~l~~g~ 299 (337)
T d1z41a1 223 KGLDIADHIGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIRE---QADMATGAVGMITDGSMAEEILQNGR 299 (337)
T ss_dssp TSCCHHHHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHH---HHCCEEEECSSCCSHHHHHHHHHTTS
T ss_pred CccchhhhHHHHHHHHHcCCcccccccccccccccccCCcccHHHHHHHHH---hcCceEEEeCCcCCHHHHHHHHHCCC
Confidence 11 34456778889999998853332210000001221111122333 2369999999999999999999999
Q ss_pred CCEEEECccccC
Q psy1056 453 ASTAMMGSLLAG 464 (590)
Q Consensus 453 A~~v~~g~~l~~ 464 (590)
||+|++|++|..
T Consensus 300 ~D~V~~gR~~ia 311 (337)
T d1z41a1 300 ADLIFIGRELLR 311 (337)
T ss_dssp CSEEEECHHHHH
T ss_pred cceehhhHHHHh
Confidence 999999998853
|
| >d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermus thermophilus [TaxId: 274]
Probab=98.00 E-value=2.5e-05 Score=74.77 Aligned_cols=132 Identities=19% Similarity=0.209 Sum_probs=88.4
Q ss_pred hHHHHHHHHHHcCCcEEEEecCC---CchhhHHHHHHHHHHhCCCceEEe-ccccCcHHHHHHHHCCCCEEEE-------
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQ---GNSIYQIEMIKFIKKEYPDMQVIG-GNVLFGYQPRATLLNFIYQIEM------- 398 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~---G~~~~~l~~i~~i~~~~~~vpvi~-g~v~s~~~a~~l~~~Gvd~i~v------- 398 (590)
+..+.++.+.+.|++-+++..-. +....-.+.++.+.+.. .+|+.+ |++.+.++++++.++|++.|.+
T Consensus 31 dP~~~a~~~~~~g~dei~iiDl~~~~~~~~~~~~~i~~i~~~~-~~pi~vgGGIrs~e~~~~ll~~Ga~kVii~s~~~~n 109 (251)
T d1ka9f_ 31 DPVEAARAYDEAGADELVFLDISATHEERAILLDVVARVAERV-FIPLTVGGGVRSLEDARKLLLSGADKVSVNSAAVRR 109 (251)
T ss_dssp CHHHHHHHHHHHTCSCEEEEECCSSTTCHHHHHHHHHHHHTTC-CSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHC
T ss_pred CHHHHHHHHHHcCCCEEEEEecccccccchhHHHHHHHHHhcc-CcchheeccccCHHHHHHHHHcCCCEEEECchhhhC
Confidence 45677888889999977764422 22233467788888876 688865 5666999999999999999977
Q ss_pred ------------------cccccccC-CC---cccc-------------------------------cc-chhHHHHHHH
Q psy1056 399 ------------------IKFIKKEY-PD---MQVI-------------------------------GR-NGTAVYRVAE 424 (590)
Q Consensus 399 ------------------~~~~~~~~-~~---~~~~-------------------------------g~-~~~~l~~~~~ 424 (590)
++...... .. ..+| |. +--.+..+..
T Consensus 110 ~~~i~~~~~~~G~q~iv~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~eii~tdi~~dG~~~G~d~~l~~~ 189 (251)
T d1ka9f_ 110 PELIRELADHFGAQAVVLAIDARWRGDFPEVHVAGGRVPTGLHAVEWAVKGVELGAGEILLTSMDRDGTKEGYDLRLTRM 189 (251)
T ss_dssp THHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHHTCCEEEEEETTTTTTCSCCCHHHHHH
T ss_pred HHHHHHHHHhhcccccccccchhhcccceEEEeccceecCCccHHHHHHHHHhcCCCEEEEEeecccCccCCcchhHHHH
Confidence 00000000 00 0111 11 1001112223
Q ss_pred HHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 425 YASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 425 ~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
.....++|+|++||+++..|+.+++..|+++|.+|++|
T Consensus 190 i~~~~~~pii~~GGv~~~~dl~~l~~~g~~gviig~al 227 (251)
T d1ka9f_ 190 VAEAVGVPVIASGGAGRMEHFLEAFQAGAEAALAASVF 227 (251)
T ss_dssp HHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHH
T ss_pred HHhhcceeEEEecCCCCHHHHHHHHHCCCCEEEEhHHH
Confidence 33445799999999999999999999999999999988
|
| >d1wv2a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: ThiG-like family: ThiG-like domain: Thiazole biosynthesis protein ThiG species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.97 E-value=1.6e-05 Score=74.39 Aligned_cols=87 Identities=20% Similarity=0.150 Sum_probs=63.6
Q ss_pred ceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHH
Q psy1056 372 MQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALA 450 (590)
Q Consensus 372 vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kala 450 (590)
..++..--.++..+++|.++|+.++ + -.+.. --+|.|+ ....+..+.+ ..++|+|.|+||.+|.|+++|+.
T Consensus 128 F~Vlpy~~~D~v~ak~le~~Gc~~v-M--plgsP--IGsg~Gi~n~~~l~~i~~---~~~vpvivdAGIg~psdaa~AME 199 (243)
T d1wv2a_ 128 FDVMVYTSDDPIIARQLAEIGCIAV-M--PLAGL--IGSGLGICNPYNLRIILE---EAKVPVLVDAGVGTASDAAIAME 199 (243)
T ss_dssp CEEEEEECSCHHHHHHHHHSCCSEE-E--ECSSS--TTCCCCCSCHHHHHHHHH---HCSSCBEEESCCCSHHHHHHHHH
T ss_pred eEEEeccCCCHHHHhHHHHcCceee-e--ecccc--cccccccccHHHHHhccc---cCCcceEeecccCCHHHHHHHHH
Confidence 3444444457888999999999988 3 11111 0223466 6666655544 34699999999999999999999
Q ss_pred cCCCEEEECccccCCC
Q psy1056 451 LGASTAMMGSLLAGTS 466 (590)
Q Consensus 451 lGA~~v~~g~~l~~~~ 466 (590)
||||+|.+.+.++.+.
T Consensus 200 lG~dgVLvnsaIa~A~ 215 (243)
T d1wv2a_ 200 LGCEAVLMNTAIAHAK 215 (243)
T ss_dssp HTCSEEEESHHHHTSS
T ss_pred ccCCEEEechHhhcCC
Confidence 9999999999997554
|
| >d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 2,4-dienoyl-CoA reductase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.88 E-value=5.2e-05 Score=75.46 Aligned_cols=132 Identities=15% Similarity=0.088 Sum_probs=86.3
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCC--------------------c----hhhHHHHHHHHHHhCC-CceEEec-------
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQG--------------------N----SIYQIEMIKFIKKEYP-DMQVIGG------- 377 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G--------------------~----~~~~l~~i~~i~~~~~-~vpvi~g------- 377 (590)
...+.+..+.++|.|.|.|+.++| . .++.++.++.+++..+ +.++.+.
T Consensus 142 ~f~~aA~ra~~AGfDgVEIh~ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~~Eii~air~~vg~d~~v~~R~s~~d~~ 221 (330)
T d1ps9a1 142 NFARCAQLAREAGYDGVEVMGSEGYLINEFLTLRTNQRSDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSMLDLV 221 (330)
T ss_dssp HHHHHHHHHHHTTCSEEEEEECBTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEEECCS
T ss_pred HHHHHHHHHHHhCcCeeeeccchHHHHHHHHHhhcccccccCCccHhhhhHHHHHHHHHHHHHcCCCceeEecccccccc
Confidence 344567888899999999987542 1 1345788999998875 5666632
Q ss_pred -cccC----cHHHHHHHHCCCCEEEEcccccccCCCccccc--cchhHHHHHHHHH-hcCCCcEEecCCCCCHHHHHHHH
Q psy1056 378 -NVLF----GYQPRATLLNFIYQIEMIKFIKKEYPDMQVIG--RNGTAVYRVAEYA-SRRGVPVIADGGVQSVGHVMKAL 449 (590)
Q Consensus 378 -~v~s----~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g--~~~~~l~~~~~~~-~~~~v~iia~GGi~~~~di~kal 449 (590)
+..+ .+-++.|.++|+|++.++....... ...+. ........+.+.. +..++|||+.|||.++.++-++|
T Consensus 222 ~~g~~~~~~~~~~~~l~~~g~d~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~ae~~l 299 (330)
T d1ps9a1 222 EDGGTFAETVELAQAIEAAGATIINTGIGWHEAR--IPTIATPVPRGAFSWVTRKLKGHVSLPLVTTNRINDPQVADDIL 299 (330)
T ss_dssp TTCCCHHHHHHHHHHHHHHTCSEEEEEECBTTCS--SCSSSTTSCTTTTHHHHHHHTTSCSSCEEECSSCCSHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHhhhhhhhccccccccc--ccccCCCCcchhHHHHHHHHHhhCCceEEEeCCCCCHHHHHHHH
Confidence 1223 4445667779999998743322110 00011 0111112222222 33479999999999999999999
Q ss_pred HcC-CCEEEECcccc
Q psy1056 450 ALG-ASTAMMGSLLA 463 (590)
Q Consensus 450 alG-A~~v~~g~~l~ 463 (590)
+-| ||+|++|++|.
T Consensus 300 ~~g~~D~V~~gR~~i 314 (330)
T d1ps9a1 300 SRGDADMVSMARPFL 314 (330)
T ss_dssp HTTSCSEEEESTHHH
T ss_pred HCCCcchhHhhHHHH
Confidence 999 99999999885
|
| >d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=97.87 E-value=6.8e-05 Score=71.62 Aligned_cols=129 Identities=19% Similarity=0.160 Sum_probs=87.3
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCC---chhhHHHHHHHHHHhCCCceEEec-cccCcHHHHHHHHCCCCEEEE-------
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQG---NSIYQIEMIKFIKKEYPDMQVIGG-NVLFGYQPRATLLNFIYQIEM------- 398 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G---~~~~~l~~i~~i~~~~~~vpvi~g-~v~s~~~a~~l~~~Gvd~i~v------- 398 (590)
+..+.+..+.+.|++.+++..-.+ ......+.++.+.... .+|+.+| ++-+.++++++.++|++-|.+
T Consensus 33 dP~~~a~~~~~~gadei~ivDl~~~~~~~~~~~~~i~~i~~~~-~~pi~~gGGIr~~e~~~~ll~~G~~kVii~s~~~~~ 111 (252)
T d1h5ya_ 33 DPVEMAVRYEEEGADEIAILDITAAPEGRATFIDSVKRVAEAV-SIPVLVGGGVRSLEDATTLFRAGADKVSVNTAAVRN 111 (252)
T ss_dssp CHHHHHHHHHHTTCSCEEEEECCCCTTTHHHHHHHHHHHHHHC-SSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHHC
T ss_pred CHHHHHHHHHHCCCCEEEEEeccccccccccHHHHHHHHHhhc-CCcceeecccchhhhhhhHhhcCCcEEEecccccCC
Confidence 345778888899999776644322 2233457788888776 7898765 455999999999999999977
Q ss_pred ------------------cccccccCCC----cccc-----------------------------------ccchhHHHH
Q psy1056 399 ------------------IKFIKKEYPD----MQVI-----------------------------------GRNGTAVYR 421 (590)
Q Consensus 399 ------------------~~~~~~~~~~----~~~~-----------------------------------g~~~~~l~~ 421 (590)
++........ ..+| |.....
T Consensus 112 ~~~~~~~~~~~G~q~iv~slD~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~eii~tdI~~dG~~~G~d~~~--- 188 (252)
T d1h5ya_ 112 PQLVALLAREFGSQSTVVAIDAKWNGEYYEVYVKGGREATGLDAVKWAKEVEELGAGEILLTSIDRDGTGLGYDVEL--- 188 (252)
T ss_dssp THHHHHHHHHHCGGGEEEEEEEEECSSSEEEEETTTTEEEEEEHHHHHHHHHHHTCSEEEEEETTTTTTCSCCCHHH---
T ss_pred cchHHHHHHhcCCCcEEEEEEEEEcCCcEEEEEeCCeEcCCCCHHHHHHHHHhcCCCEEEEEeecccCccCCcCHHH---
Confidence 0000000000 0111 111111
Q ss_pred HHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 422 VAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 422 ~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
+.......++|+|++||+++..|+.++..+|+++|.+|++|
T Consensus 189 ~~~i~~~~~~pii~~GGv~~~~di~~l~~~g~~gv~~gs~l 229 (252)
T d1h5ya_ 189 IRRVADSVRIPVIASGGAGRVEHFYEAAAAGADAVLAASLF 229 (252)
T ss_dssp HHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHH
T ss_pred HHHHHHhcCCCEEEecCCCCHHHHHHHHHCCCCEEEEhhHH
Confidence 22222334699999999999999999999999999999988
|
| >d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Trimethylamine dehydrogenase, N-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.87 E-value=7.7e-05 Score=74.54 Aligned_cols=134 Identities=13% Similarity=0.088 Sum_probs=86.4
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCC--------------------c---h-hhHHHHHHHHHHhCC-CceEEec----c--
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQG--------------------N---S-IYQIEMIKFIKKEYP-DMQVIGG----N-- 378 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G--------------------~---~-~~~l~~i~~i~~~~~-~vpvi~g----~-- 378 (590)
+..+.+....++|.|.|.|+.++| . + ++.++.++.+++..+ +.|+.++ +
T Consensus 150 ~f~~aA~~a~~aGfDgVEih~ahGyLl~qFls~~~N~R~D~yGGs~enR~Rf~~EIi~aIr~~vg~~~~i~~R~s~~~~~ 229 (340)
T d1djqa1 150 FYVDAAKRSRDAGFDIVYVYGAHSYLPLQFLNPYYNKRTDKYGGSLENRARFWLETLEKVKHAVGSDCAIATRFGVDTVY 229 (340)
T ss_dssp HHHHHHHHHHHHTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECSS
T ss_pred HHHHHHHHHHHhccceeeeeccccchhhhhhhhccccccccccccHHhhhHHHHHHHHHHHHHHhhhhhceeeccccccc
Confidence 344567888899999999997542 1 1 345788999998874 5666643 1
Q ss_pred ---ccC----cHHHHHHHHCCCCEEEEcccccccC---CCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHH
Q psy1056 379 ---VLF----GYQPRATLLNFIYQIEMIKFIKKEY---PDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKA 448 (590)
Q Consensus 379 ---v~s----~~~a~~l~~~Gvd~i~v~~~~~~~~---~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~ka 448 (590)
..+ ...+..+.+.|+|+++|+....... .....+......+..+.......++|||+.|||+++.++.++
T Consensus 230 ~~~~~~~e~~~~~~~~l~~~~vd~~~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~G~i~~~~~a~~~ 309 (340)
T d1djqa1 230 GPGQIEAEVDGQKFVEMADSLVDMWDITIGDIAEWGEDAGPSRFYQQGHTIPWVKLVKQVSKKPVLGVGRYTDPEKMIEI 309 (340)
T ss_dssp CTTSCCTTTHHHHHHHHHTTTCSEEEEEESCSTTGGGTSCCTTTCCTTTTHHHHHHHHTTCSSCEEECSCCCCHHHHHHH
T ss_pred cCCCCchhhhHHHHHHHHhhccceeeeeecccccccccccccccCCccccHHHHHHHHHHcCCeEEEECCCCCHHHHHHH
Confidence 111 2235678889999998854321110 000000001111222222223347999999999999999999
Q ss_pred HHcC-CCEEEECcccc
Q psy1056 449 LALG-ASTAMMGSLLA 463 (590)
Q Consensus 449 lalG-A~~v~~g~~l~ 463 (590)
|+-| ||+|++|++|.
T Consensus 310 l~~G~aDlV~~gR~~i 325 (340)
T d1djqa1 310 VTKGYADIIGCARPSI 325 (340)
T ss_dssp HHTTSCSBEEESHHHH
T ss_pred HHCCCccchhhHHHHH
Confidence 9999 99999999885
|
| >d1f76a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.79 E-value=9.4e-05 Score=73.76 Aligned_cols=129 Identities=12% Similarity=-0.037 Sum_probs=74.3
Q ss_pred HHHHHHHcCCcEEEEecCCCch---------hhHHHHHHH--------HHHhCCCceEEeccccC------cHHHHHHHH
Q psy1056 334 RLKLLSQAGVDVVILDSSQGNS---------IYQIEMIKF--------IKKEYPDMQVIGGNVLF------GYQPRATLL 390 (590)
Q Consensus 334 ~~~~li~~gad~i~V~~~~G~~---------~~~l~~i~~--------i~~~~~~vpvi~g~v~s------~~~a~~l~~ 390 (590)
......+.++|++.++.+-.+. ......+.. ......++|+++|--.+ .+-+..+.+
T Consensus 157 ~~~~~~~~~ad~iElNiScPN~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Pv~vKlsp~~~~~~i~~~a~~~~~ 236 (336)
T d1f76a_ 157 ICMEKIYAYAGYIAINISSPNTPGLRTLQYGEALDDLLTAIKNKQNDLQAMHHKYVPIAVKIAPDLSEEELIQVADSLVR 236 (336)
T ss_dssp HHHHHHGGGCSEEEEECCCSSSTTGGGGGSHHHHHHHHHHHHHHHHHHHHHHTSCCCEEEECCSCCCHHHHHHHHHHHHH
T ss_pred HHHHHhhcccceeeecccchhhhcccccccchhhccchhhhhhhhhhhhhhccCcCCcccccchhhhhhhhhhhHHHHHh
Confidence 3344456789999998643211 111111111 11222368999875442 234556667
Q ss_pred CCCCEEEEccccccc-C----------CCccccccchhHHHHHHHHHhc--CCCcEEecCCCCCHHHHHHHHHcCCCEEE
Q psy1056 391 NFIYQIEMIKFIKKE-Y----------PDMQVIGRNGTAVYRVAEYASR--RGVPVIADGGVQSVGHVMKALALGASTAM 457 (590)
Q Consensus 391 ~Gvd~i~v~~~~~~~-~----------~~~~~~g~~~~~l~~~~~~~~~--~~v~iia~GGi~~~~di~kalalGA~~v~ 457 (590)
.|++++...+..... . .|..|-.+.+.++..+.+..+. .++|||+.|||.|+.|+.+-+.+||++|+
T Consensus 237 ~g~~gv~~int~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~v~~v~~~~~~~ipIIG~GGI~s~~Da~e~i~aGAsaVQ 316 (336)
T d1f76a_ 237 HNIDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLSLELNGRLPIIGVGGIDSVIAAREKIAAGASLVQ 316 (336)
T ss_dssp TTCSEEEECCCBCCCTTSTTSTTTTCSSEEEEGGGHHHHHHHHHHHHHHHTTSSCEEEESSCCSHHHHHHHHHHTCSEEE
T ss_pred cCccchhhhhhhhcccccccccccccccccccchhHHHHHHHHHHHHHHcCCCCeEEEECCCCCHHHHHHHHHcCCcHHH
Confidence 899999652111110 0 0111111222233333333222 25999999999999999999999999999
Q ss_pred ECccc
Q psy1056 458 MGSLL 462 (590)
Q Consensus 458 ~g~~l 462 (590)
+|+.|
T Consensus 317 v~Tal 321 (336)
T d1f76a_ 317 IYSGF 321 (336)
T ss_dssp ESHHH
T ss_pred HHHHH
Confidence 99987
|
| >d1znna1 c.1.2.6 (A:18-271) Pyridoxal biosynthesis lyase PdxS {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: PdxS-like domain: Pyridoxal biosynthesis lyase PdxS species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.79 E-value=0.00012 Score=67.26 Aligned_cols=106 Identities=18% Similarity=0.115 Sum_probs=73.0
Q ss_pred HHHHHHHHHhCCCceEEec-cccCcHHHHHHHHCCCCEEEEc---------------------ccccccC----------
Q psy1056 359 IEMIKFIKKEYPDMQVIGG-NVLFGYQPRATLLNFIYQIEMI---------------------KFIKKEY---------- 406 (590)
Q Consensus 359 l~~i~~i~~~~~~vpvi~g-~v~s~~~a~~l~~~Gvd~i~v~---------------------~~~~~~~---------- 406 (590)
.+.+..+.+.. .+|++.+ .++..-.|+-|...|+|+++=| +|..|..
T Consensus 47 p~~i~ei~~~v-sipvmak~righ~~eaqiLe~~~vd~ideseVLTpad~~~hi~k~~fkvpfVcg~r~Lgealrri~Eg 125 (254)
T d1znna1 47 PTVIEEVMNAV-SIPVMAKVRIGHYVEARVLEALGVDYIDESEVLTPADEEFHIDKRQFTVPFVCGCRDLGEAARRIAEG 125 (254)
T ss_dssp HHHHHHHHHHC-SSCEEEEEETTCHHHHHHHHHHTCSEEEEETTSCCSCSSCCCCGGGCSSCEEEEESSHHHHHHHHHTT
T ss_pred HHHHHHHHHhc-ccccccccCCCchHHHHhHHhhCCCcccHhHhcccccHHHhhcccceeeeeeCCCCccchhHHHHHHH
Confidence 56788888877 7899865 5668899999999999999851 1111110
Q ss_pred ------CCccccccchhHHHHH--------------------------------HHH--HhcCCCcEEecCCCCCHHHHH
Q psy1056 407 ------PDMQVIGRNGTAVYRV--------------------------------AEY--ASRRGVPVIADGGVQSVGHVM 446 (590)
Q Consensus 407 ------~~~~~~g~~~~~l~~~--------------------------------~~~--~~~~~v~iia~GGi~~~~di~ 446 (590)
.|+.+.|+..+++.-+ .+. ..+..+|++++|||.||.|++
T Consensus 126 AamIrtkGeagtgnvveav~h~R~i~~~i~~~~~m~~~el~~~ak~lg~p~~l~~~v~~~g~l~v~~~~~~Gi~tpadaa 205 (254)
T d1znna1 126 ASMLRTKGEPGTGNIVEAVRHMRKVNAQIRKVVNMSEDELVAEAKQLGAPVEVLREIKRLGRLPVVNFAAGGVTTPADAA 205 (254)
T ss_dssp CSEEEECCCTTSCCCHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHTCCHHHHHHHHHHTSCSSEEEEESSCCSHHHHH
T ss_pred HHHHHhCCccCCCcHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhCCchHHHHHHHHhCCCCceEEecCCCCChhhHH
Confidence 0344444322211110 011 123469999999999999999
Q ss_pred HHHHcCCCEEEECccccCC
Q psy1056 447 KALALGASTAMMGSLLAGT 465 (590)
Q Consensus 447 kalalGA~~v~~g~~l~~~ 465 (590)
.++.||||+|++|+.+..+
T Consensus 206 ~~MelG~dgV~v~s~I~~s 224 (254)
T d1znna1 206 LMMHLGADGVFVGSGIFKS 224 (254)
T ss_dssp HHHHTTCSEEEECGGGGGS
T ss_pred HHHHcCCCEEEEcchhhcC
Confidence 9999999999999988654
|
| >d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Streptomyces coelicolor [TaxId: 1902]
Probab=97.73 E-value=0.00013 Score=69.10 Aligned_cols=131 Identities=17% Similarity=0.177 Sum_probs=84.8
Q ss_pred hHHHHHHHHHHcCCcEEEEec---CCCchhhHHHHHHHHHHhCCCceEEec-cccCcHHHHHHHHCCCCEEEE-------
Q psy1056 330 ADKNRLKLLSQAGVDVVILDS---SQGNSIYQIEMIKFIKKEYPDMQVIGG-NVLFGYQPRATLLNFIYQIEM------- 398 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~---~~G~~~~~l~~i~~i~~~~~~vpvi~g-~v~s~~~a~~l~~~Gvd~i~v------- 398 (590)
+..+.+..+.+.|++.+++.. ..+... -.+.++.+.... .+|+.+| ++.+.++++++.+.|++.|.+
T Consensus 32 dP~~~a~~~~~~ga~~l~i~DLd~~~~~~~-~~~~i~~i~~~~-~~pi~vGGGIrs~~~~~~ll~~Ga~kVvi~s~~~~~ 109 (239)
T d1vzwa1 32 SPLEAALAWQRSGAEWLHLVDLDAAFGTGD-NRALIAEVAQAM-DIKVELSGGIRDDDTLAAALATGCTRVNLGTAALET 109 (239)
T ss_dssp CHHHHHHHHHHTTCSEEEEEEHHHHHTSCC-CHHHHHHHHHHC-SSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHHC
T ss_pred CHHHHHHHHHHcCCCEEEEEeecccccccc-hHHHHHHHHhhc-CcceEeecccccchhhhhhhccccccchhhHHhhhc
Confidence 346778888899999888753 112111 246777888877 6898865 555999999999999999977
Q ss_pred -----------------cccccccCCCcccc------------------------------cc-chhHHHHHHHHHhcCC
Q psy1056 399 -----------------IKFIKKEYPDMQVI------------------------------GR-NGTAVYRVAEYASRRG 430 (590)
Q Consensus 399 -----------------~~~~~~~~~~~~~~------------------------------g~-~~~~l~~~~~~~~~~~ 430 (590)
+...........+| |. +---+..+....+..+
T Consensus 110 ~~~~~~~~~~~g~~~vv~~d~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~eii~tdi~~dGt~~G~d~~l~~~i~~~~~ 189 (239)
T d1vzwa1 110 PEWVAKVIAEHGDKIAVGLDVRGTTLRGRGWTRDGGDLYETLDRLNKEGCARYVVTDIAKDGTLQGPNLELLKNVCAATD 189 (239)
T ss_dssp HHHHHHHHHHHGGGEEEEEEEETTEECCSSSCCCCCBHHHHHHHHHHTTCCCEEEEEC-------CCCHHHHHHHHHTCS
T ss_pred cccchhhhccCCceeeeeeccceeeecCccceeeccccchhhhhhhhccccEEEEEeecccceecCCcchhhhhhhhccC
Confidence 00000000000011 11 0000112223334457
Q ss_pred CcEEecCCCCCHHHHHHHHHc---CCCEEEECccc
Q psy1056 431 VPVIADGGVQSVGHVMKALAL---GASTAMMGSLL 462 (590)
Q Consensus 431 v~iia~GGi~~~~di~kalal---GA~~v~~g~~l 462 (590)
+|+|++|||++..|+.+.-.+ |+++|.+|++|
T Consensus 190 ~pvi~sGGv~s~~Di~~l~~l~~~g~~gvivg~al 224 (239)
T d1vzwa1 190 RPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGKAL 224 (239)
T ss_dssp SCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHH
T ss_pred ceEEEECCCCCHHHHHHHHhhhhCCccEeeEhHHH
Confidence 999999999999999877666 99999999988
|
| >d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Putative flavin oxidoreducatase TM0096 species: Thermotoga maritima [TaxId: 2336]
Probab=97.73 E-value=0.00013 Score=71.58 Aligned_cols=130 Identities=8% Similarity=0.048 Sum_probs=86.6
Q ss_pred eeccchhHHHHHHHHHHcCCcEEEEec--CC--------C-----chhhHHHHHHHHHHhCCCceEEecc------ccCc
Q psy1056 324 AIGTREADKNRLKLLSQAGVDVVILDS--SQ--------G-----NSIYQIEMIKFIKKEYPDMQVIGGN------VLFG 382 (590)
Q Consensus 324 ~i~~~~~~~e~~~~li~~gad~i~V~~--~~--------G-----~~~~~l~~i~~i~~~~~~vpvi~g~------v~s~ 382 (590)
-.|...+....+..+++.|++.|-++. +. | ++..+.+.++.+++.. ++||-+|- -.+.
T Consensus 61 l~g~~p~~~~~aa~~~~~~~~~IdlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~-~~pvsvK~RlG~d~~~~~ 139 (305)
T d1vhna_ 61 IFGSEPNELSEAARILSEKYKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKSV-SGKFSVKTRLGWEKNEVE 139 (305)
T ss_dssp EECSCHHHHHHHHHHHTTTCSEEEEEECCCCHHHHHTTCGGGGGSCHHHHHHHHHHHHHHC-SSEEEEEEESCSSSCCHH
T ss_pred EeccchhhhhhhhhhhhhheeeeeEEEEecchhhcccccceeeccCHHHHHHHhhhhhhhc-ccccccccccCcccchhh
Confidence 344444444444466777999988874 21 1 2344567888888887 78988752 1255
Q ss_pred HHHHHHHHCCCCEEEEccccccc-CCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHc-CCCEEEECc
Q psy1056 383 YQPRATLLNFIYQIEMIKFIKKE-YPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALAL-GASTAMMGS 460 (590)
Q Consensus 383 ~~a~~l~~~Gvd~i~v~~~~~~~-~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalal-GA~~v~~g~ 460 (590)
+-++.+.++|++.|.|-..+..+ ..+..+|. .+..+ + .++|+|+-|||.+..|+.+++.. |+|+||+|+
T Consensus 140 ~~~~~l~~~G~~~itvH~Rt~~q~~~~~a~~~----~i~~~----~-~~ipvi~NGdI~s~~d~~~~l~~tg~dgVMiGR 210 (305)
T d1vhna_ 140 EIYRILVEEGVDEVFIHTRTVVQSFTGRAEWK----ALSVL----E-KRIPTFVSGDIFTPEDAKRALEESGCDGLLVAR 210 (305)
T ss_dssp HHHHHHHHTTCCEEEEESSCTTTTTSSCCCGG----GGGGS----C-CSSCEEEESSCCSHHHHHHHHHHHCCSEEEESG
T ss_pred HHHHHHHHhCCcEEEechhhhhhccccchhhh----HHHhh----h-hhhhhhcccccccHHHHHHHHHhcCCCeEehhH
Confidence 77889999999999762222111 01223332 22111 1 25999999999999999999974 999999998
Q ss_pred ccc
Q psy1056 461 LLA 463 (590)
Q Consensus 461 ~l~ 463 (590)
...
T Consensus 211 gal 213 (305)
T d1vhna_ 211 GAI 213 (305)
T ss_dssp GGT
T ss_pred HHH
Confidence 664
|
| >d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Maize (Zea mays) [TaxId: 4577]
Probab=97.68 E-value=9.8e-05 Score=70.50 Aligned_cols=134 Identities=18% Similarity=0.175 Sum_probs=84.4
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCC--------------------Cch-hhHHHHHHHHHHhCCCceEEe---ccccCcHH
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQ--------------------GNS-IYQIEMIKFIKKEYPDMQVIG---GNVLFGYQ 384 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~--------------------G~~-~~~l~~i~~i~~~~~~vpvi~---g~v~s~~~ 384 (590)
+...+.++.+.++|+|++.+-.+. |.. ..+++.++.+++.. +.|+++ -|-.-...
T Consensus 31 ~~~~~~l~~l~~~G~DiiElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~-~~p~ilm~Y~n~~~~~~ 109 (261)
T d1rd5a_ 31 ATTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPEL-SCPVVLLSYYKPIMFRS 109 (261)
T ss_dssp HHHHHHHHHHHHTTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHHHHHHHGGGC-SSCEEEECCSHHHHSCC
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCCcCcCCcceeeeeeeccccCcchhhhhhhhhcccccc-cCceeeeeeecchhhHH
Confidence 455778999999999999987432 222 34567777787765 566652 12122223
Q ss_pred HHHHHHCCCCEEEE--------------------------ccccccc--C------C---------Ccccccc-chhHHH
Q psy1056 385 PRATLLNFIYQIEM--------------------------IKFIKKE--Y------P---------DMQVIGR-NGTAVY 420 (590)
Q Consensus 385 a~~l~~~Gvd~i~v--------------------------~~~~~~~--~------~---------~~~~~g~-~~~~l~ 420 (590)
.+++.++|+|++.+ ++.++.. + + |.+|... -...+.
T Consensus 110 ~~~~~~~GvdG~IipDlp~eE~~~~~~~~~~~gl~~I~lvaPtt~~~Ri~~i~~~a~gFvY~vs~~GvTG~~~~~~~~~~ 189 (261)
T d1rd5a_ 110 LAKMKEAGVHGLIVPDLPYVAAHSLWSEAKNNNLELVLLTTPAIPEDRMKEITKASEGFVYLVSVNGVTGPRANVNPRVE 189 (261)
T ss_dssp THHHHHTTCCEEECTTCBTTTHHHHHHHHHHTTCEECEEECTTSCHHHHHHHHHHCCSCEEEECSSCCBCTTSCBCTHHH
T ss_pred HHHHHhcCceeeeecCccHHHHHHHHHHHhccccceEEEeccCCchhHHHHHHhcCcchhhhhhccCcccccccchhHHH
Confidence 56678899999976 1101100 0 0 2233222 112222
Q ss_pred HH-HHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 421 RV-AEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 421 ~~-~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
+. ....+..++|++...||+++.|+.+....|||+|++|+.|.
T Consensus 190 ~~i~~ik~~t~~Pi~vGFGI~~~e~v~~~~~~gaDGvIVGSaiv 233 (261)
T d1rd5a_ 190 SLIQEVKKVTNKPVAVGFGISKPEHVKQIAQWGADGVIIGSAMV 233 (261)
T ss_dssp HHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEECHHHH
T ss_pred HHHHHhhhccCCCeEEEcCCCCHHHHHHHHhcCCCEEEECHHHH
Confidence 22 22222246999999999999999999999999999999884
|
| >d1piia2 c.1.2.4 (A:1-254) Indole-3-glycerophosphate synthase, IPGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Escherichia coli [TaxId: 562]
Probab=97.64 E-value=0.0002 Score=67.41 Aligned_cols=130 Identities=11% Similarity=0.068 Sum_probs=88.2
Q ss_pred HHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEecccc-CcHHHHHHHHCCCCEEEE------------
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVL-FGYQPRATLLNFIYQIEM------------ 398 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~-s~~~a~~l~~~Gvd~i~v------------ 398 (590)
.+.++ ..+.|+.++.|.+...+..|-++.+..+++.. ++|++.|+-. ++.+..++..+|||+|-+
T Consensus 71 ~~~a~-~~~~gA~aiSVLTe~~~F~Gs~~~l~~v~~~~-~~PiLrKDFIid~~QI~ear~~GADavLLI~~~L~~~~l~~ 148 (254)
T d1piia2 71 ARIAA-IYKHYASAISVLTDEKYFQGSFNFLPIVSQIA-PQPILCKDFIIDPYQIYLARYYQADACLLMLSVLDDDQYRQ 148 (254)
T ss_dssp HHHHH-HHTTTCSEEEEECCSTTTCCCTTHHHHHHHHC-CSCEEEESCCCSHHHHHHHHHTTCSEEEEETTTCCHHHHHH
T ss_pred HHHHH-HHHhccCceEEecccccCCCCHHHHHHHHhcc-ccccchhcccCcHHHHHHHHhhccchhhhhHhhhcccHHHH
Confidence 34443 66789999999886655555567788888887 7999998766 999999999999999975
Q ss_pred --------------cccccccCC----------C-----ccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHH
Q psy1056 399 --------------IKFIKKEYP----------D-----MQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKAL 449 (590)
Q Consensus 399 --------------~~~~~~~~~----------~-----~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kal 449 (590)
.+++..+.. | ...+.+....-.++..... .++.+|+.+||+++.|+.. +
T Consensus 149 l~~~a~~lgl~~LVEvh~~~El~~a~~~~a~iIGINnRnL~tf~vd~~~t~~L~~~ip-~~~~~VsESGI~~~~d~~~-l 226 (254)
T d1piia2 149 LAAVAHSLEMGVLTEVSNEEEQERAIALGAKVVGINNRDLRDLSIDLNRTRELAPKLG-HNVTVISESGINTYAQVRE-L 226 (254)
T ss_dssp HHHHHHHTTCEEEEEECSHHHHHHHHHTTCSEEEEESEETTTTEECTHHHHHHHHHHC-TTSEEEEESCCCCHHHHHH-H
T ss_pred HHHHHHHHhhhHHHhhccHHHHHHHHhhcccccCccccchhhhhhhhHHHHHHHHhCC-CCCEEEEcCCCCCHHHHHH-H
Confidence 000000000 1 1111111122223444443 3678999999999999865 6
Q ss_pred HcCCCEEEECccccCC
Q psy1056 450 ALGASTAMMGSLLAGT 465 (590)
Q Consensus 450 alGA~~v~~g~~l~~~ 465 (590)
..|+|+|.+|..|+.+
T Consensus 227 ~~g~davLiGeslm~~ 242 (254)
T d1piia2 227 SHFANGFLIGSALMAH 242 (254)
T ss_dssp TTTCSEEEECHHHHTC
T ss_pred HcCCCEEEEChHHhCC
Confidence 8899999999988644
|
| >d1i4na_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermotoga maritima [TaxId: 2336]
Probab=97.54 E-value=0.00012 Score=68.83 Aligned_cols=131 Identities=7% Similarity=0.040 Sum_probs=85.9
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEecccc-CcHHHHHHHHCCCCEEEE-----------
Q psy1056 331 DKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVL-FGYQPRATLLNFIYQIEM----------- 398 (590)
Q Consensus 331 ~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~-s~~~a~~l~~~Gvd~i~v----------- 398 (590)
..+.++.- +.|+.++.|.+-+.+..|-.+.+..+++.. ++|++.|+-. ++.+...+..+|||+|-+
T Consensus 63 ~~~~a~~y-e~GA~aiSVLTd~~~F~Gs~~~l~~vr~~~-~~PiLrKDFIid~~QI~ea~~~GADaiLLI~~~L~~~~l~ 140 (251)
T d1i4na_ 63 LEDFIRMY-DELADAISILTEKHYFKGDPAFVRAARNLT-CRPILAKDFYIDTVQVKLASSVGADAILIIARILTAEQIK 140 (251)
T ss_dssp HHHHHHHH-HHHCSEEEEECCCSSSCCCTHHHHHHHTTC-CSCEEEECCCCSTHHHHHHHHTTCSEEEEEGGGSCHHHHH
T ss_pred HHHHHHHH-hcCCcceEEecccCCCCCCHHHHHHHhhcc-cCchhhhhhhhCHHHHHHHHhhccceEEeecccccHHHHH
Confidence 34555433 679999999876654445566777777765 7999998766 999999999999999975
Q ss_pred ---------------ccccc----cc---CC----Ccccccc-ch----hHHHHHHHHHhcCCCcEEecCCCCCHHHHHH
Q psy1056 399 ---------------IKFIK----KE---YP----DMQVIGR-NG----TAVYRVAEYASRRGVPVIADGGVQSVGHVMK 447 (590)
Q Consensus 399 ---------------~~~~~----~~---~~----~~~~~g~-~~----~~l~~~~~~~~~~~v~iia~GGi~~~~di~k 447 (590)
.+++. +. .. |...+.. |. .....+..... .+..+|+.+||+++.|+.
T Consensus 141 ~l~~~a~~lgle~LvEvh~~~El~~al~~~~a~iiGINnRdL~t~~vd~~~~~~L~~~ip-~~~~~IaESGI~~~~d~~- 218 (251)
T d1i4na_ 141 EIYEAAEELGMDSLVEVHSREDLEKVFSVIRPKIIGINTRDLDTFEIKKNVLWELLPLVP-DDTVVVAESGIKDPRELK- 218 (251)
T ss_dssp HHHHHHHTTTCEEEEEECSHHHHHHHHTTCCCSEEEEECBCTTTCCBCTTHHHHHGGGSC-TTSEEEEESCCCCGGGHH-
T ss_pred HHHHHHHHhCCeeecccCCHHHHHHHhcccccceeeeeecchhccchhhhHHHHHHhhCC-CCCEEEEcCCCCCHHHHH-
Confidence 00000 00 00 1111111 11 12222332222 257899999999999985
Q ss_pred HHHcCCCEEEECccccCC
Q psy1056 448 ALALGASTAMMGSLLAGT 465 (590)
Q Consensus 448 alalGA~~v~~g~~l~~~ 465 (590)
.+..|+|+|.+|+.|+..
T Consensus 219 ~l~~G~davLIG~sLm~~ 236 (251)
T d1i4na_ 219 DLRGKVNAVLVGTSIMKA 236 (251)
T ss_dssp HHTTTCSEEEECHHHHHC
T ss_pred HHHhCCCEEEEChHHhCC
Confidence 567899999999988533
|
| >d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon (Pyrococcus furiosus) [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Thiamin phosphate synthase family: Thiamin phosphate synthase domain: Thiamin phosphate synthase species: Archaeon (Pyrococcus furiosus) [TaxId: 2261]
Probab=97.53 E-value=0.00025 Score=65.44 Aligned_cols=86 Identities=17% Similarity=0.156 Sum_probs=58.9
Q ss_pred EEeccccCcHHHHHHHHCCCCEEEEcc-cccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcC
Q psy1056 374 VIGGNVLFGYQPRATLLNFIYQIEMIK-FIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALG 452 (590)
Q Consensus 374 vi~g~v~s~~~a~~l~~~Gvd~i~v~~-~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalG 452 (590)
++...+.+.+++..+.+.|+||+-++. ..|..+++ ..+..+..+++++...++||+|-||| |..++..++..|
T Consensus 101 iig~s~h~~~e~~~a~~~g~DYi~~gpvf~T~tk~~-----~~~~g~~~l~~~~~~~~~Pv~AiGGI-~~~ni~~~~~~G 174 (206)
T d1xi3a_ 101 IIGASVYSLEEALEAEKKGADYLGAGSVFPTKTKED-----ARVIGLEGLRKIVESVKIPVVAIGGI-NKDNAREVLKTG 174 (206)
T ss_dssp EEEEEESSHHHHHHHHHHTCSEEEEECSSCC----C-----CCCCHHHHHHHHHHHCSSCEEEESSC-CTTTHHHHHTTT
T ss_pred ccccccCCHHHHHHHHhcCCCEEEeccccccccccc-----cccccHHHHHHHHHhcCCCEEEECCC-CHHHHHHHHHhC
Confidence 344466689999999999999997633 22222111 11112334455555567999999999 788999999999
Q ss_pred CCEEEECccccCC
Q psy1056 453 ASTAMMGSLLAGT 465 (590)
Q Consensus 453 A~~v~~g~~l~~~ 465 (590)
|++|.+.+.+..+
T Consensus 175 a~gvAvis~I~~~ 187 (206)
T d1xi3a_ 175 VDGIAVISAVMGA 187 (206)
T ss_dssp CSEEEESHHHHTS
T ss_pred CCEEEEhHHHHCC
Confidence 9999888877543
|
| >d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]
Probab=97.53 E-value=0.00039 Score=68.16 Aligned_cols=68 Identities=12% Similarity=-0.027 Sum_probs=49.0
Q ss_pred hHHHHHHHHHHcCCcEEEEec---CC-Cc--hhhHHHHHHHHHHhCCCceEEecccc-C-----------cHHHHHHHHC
Q psy1056 330 ADKNRLKLLSQAGVDVVILDS---SQ-GN--SIYQIEMIKFIKKEYPDMQVIGGNVL-F-----------GYQPRATLLN 391 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~---~~-G~--~~~~l~~i~~i~~~~~~vpvi~g~v~-s-----------~~~a~~l~~~ 391 (590)
+..+.++...+.|+|-+++.. +. +. ....++.++.+.+.. .+|+.+|+.. + .|.|+++.++
T Consensus 49 dP~~~a~~~~~~gaDeL~ivDidas~~~~~~~~~~~~~I~~i~~~~-~vPi~vGGGIrsi~di~~~~~~~~e~A~~ll~~ 127 (323)
T d1jvna1 49 KPVQLAQKYYQQGADEVTFLNITSFRDCPLKDTPMLEVLKQAAKTV-FVPLTVGGGIKDIVDVDGTKIPALEVASLYFRS 127 (323)
T ss_dssp HHHHHHHHHHHTTCSEEEEEEEC---CCCGGGCHHHHHHHHHTTTC-CSCEEEESSCSCEECTTCCEECHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCCEEEEEECcCCCCCcCCCchHHHHHHhhcccc-ceeEEEecCcccHHHhhhccchhhHHHHHHHHc
Confidence 567888999999999877632 22 21 233577888887776 7899876443 5 3669999999
Q ss_pred CCCEEEE
Q psy1056 392 FIYQIEM 398 (590)
Q Consensus 392 Gvd~i~v 398 (590)
|||-|.+
T Consensus 128 GadKVvI 134 (323)
T d1jvna1 128 GADKVSI 134 (323)
T ss_dssp TCSEEEE
T ss_pred CCCeEEe
Confidence 9998866
|
| >d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=97.48 E-value=0.00013 Score=66.79 Aligned_cols=110 Identities=15% Similarity=0.150 Sum_probs=79.3
Q ss_pred HHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccc
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQV 411 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~ 411 (590)
.+.++..+++|+++++ +.+.. .+.++..++. ++|++. ++.|+.++..+.++|++++++-+....
T Consensus 72 ~~~~~~a~~aGa~fiv---sP~~~---~~v~~~~~~~--~i~~iP-Gv~TpsEi~~A~~~G~~~lK~fPa~~~------- 135 (202)
T d1wa3a1 72 VEQCRKAVESGAEFIV---SPHLD---EEISQFCKEK--GVFYMP-GVMTPTELVKAMKLGHTILKLFPGEVV------- 135 (202)
T ss_dssp HHHHHHHHHHTCSEEE---CSSCC---HHHHHHHHHH--TCEEEC-EECSHHHHHHHHHTTCCEEEETTHHHH-------
T ss_pred HHHHHHHHhhcccEEe---CCCCc---HHHHHHHHhc--CCceeC-CcCcHHHHHHHHHCCCCEEEecchhhc-------
Confidence 4667788999999986 33333 3566666666 677765 788999999999999999977221110
Q ss_pred cccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 412 IGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 412 ~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
| +.-+..+.... .++|+|+.||| +..++..-|.+||.+|.+|+.|.
T Consensus 136 -G--~~~lk~l~~p~--p~i~~iptGGI-~~~n~~~~l~aga~avg~Gs~l~ 181 (202)
T d1wa3a1 136 -G--PQFVKAMKGPF--PNVKFVPTGGV-NLDNVCEWFKAGVLAVGVGSALV 181 (202)
T ss_dssp -H--HHHHHHHHTTC--TTCEEEEBSSC-CTTTHHHHHHHTCSCEEECHHHH
T ss_pred -C--HHHHHHHhCcc--cCCcEEeeCCC-CHHHHHHHHHCCCeEEEEchhhc
Confidence 1 11122232221 25999999999 88999999999999999998884
|
| >d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.45 E-value=8.7e-05 Score=74.62 Aligned_cols=67 Identities=27% Similarity=0.470 Sum_probs=55.6
Q ss_pred hHHHHHHHHHcCCcEEEEcCCCCchHHHHHHHHHhhhcCCCcccccccccchHHHHHHHHHhcccccccc
Q psy1056 138 DKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGLRVGS 207 (590)
Q Consensus 138 ~~~~~~~l~~~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~im~~~~~~~~~~~~a~~~m~~~~~v~~ 207 (590)
+.++...++++|+|+|++|.+|++.+.+.+.+++++..++. .+|..|+.+.+...++ ..+|+++||+
T Consensus 117 ~~~r~~~l~~aGvd~ivID~A~Gh~~~~i~~lK~ir~~~~~-~vIaGNVaT~e~~~~l--~gaD~VkVGI 183 (368)
T d2cu0a1 117 DIKRAIELDKAGVDVIVVDTAHAHNLKAIKSMKEMRQKVDA-DFIVGNIANPKAVDDL--TFADAVKVGI 183 (368)
T ss_dssp CHHHHHHHHHTTCSEEEEECSCCCCHHHHHHHHHHHHTCCS-EEEEEEECCHHHHTTC--TTSSEEEECS
T ss_pred HHHHHHHHHHcCCCEEEecCcccchhhhhhhhhhhhhhccc-ceeeccccCHHHHHhh--hcCcceeecc
Confidence 45677788899999999999999999999999999987774 5889999995555443 3689999986
|
| >d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=97.39 E-value=0.00023 Score=71.67 Aligned_cols=71 Identities=77% Similarity=1.165 Sum_probs=64.3
Q ss_pred chHHHHHHHHHcCCcEEEEcCCCCchHHHHHHHHHhhhcCCCcccccccccchHHHHHHHHHhcccccccc
Q psy1056 137 ADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGLRVGS 207 (590)
Q Consensus 137 d~~~~~~~l~~~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~im~~~~~~~~~~~~a~~~m~~~~~v~~ 207 (590)
++.++...++++++|++++|.+|++...+.+.+++++..++...++-.++.+.+..+++.+..||+|+||+
T Consensus 119 ~~~~~~~~l~~agv~vi~id~a~g~~~~~~~~i~~ik~~~~~~~iIaGnVaT~e~a~~L~~aGAD~VkVGi 189 (378)
T d1jr1a1 119 DDKYRLDLLALAGVDVVVLDSSQGNSIFQINMIKYMKEKYPNLQVIGGNVVTAAQAKNLIDAGVDALRVGM 189 (378)
T ss_dssp HHHHHHHHHHHHTCCEEEECCSSCCSHHHHHHHHHHHHHSTTCEEEEEEECSHHHHHHHHHHTCSEEEECS
T ss_pred HHHHHHHHHHhhccceEeeeccCccchhhHHHHHHHHHHCCCCceeecccccHHHHHHHHHhCCCEEeecc
Confidence 45566777888999999999999999999999999998888888999999998889999999999999986
|
| >d1w0ma_ c.1.1.1 (A:) Triosephosphate isomerase {Thermoproteus tenax [TaxId: 2271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Thermoproteus tenax [TaxId: 2271]
Probab=97.37 E-value=0.0012 Score=61.66 Aligned_cols=122 Identities=20% Similarity=0.173 Sum_probs=77.9
Q ss_pred HHHHHHcCCcEEEEecCCCch--hhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEE----cccccccCCC
Q psy1056 335 LKLLSQAGVDVVILDSSQGNS--IYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEM----IKFIKKEYPD 408 (590)
Q Consensus 335 ~~~li~~gad~i~V~~~~G~~--~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v----~~~~~~~~~~ 408 (590)
.+.+.+.|++.+.+..++-.. ....+.+...++. +..+++ .+++.+.++.+.+.+.+.|-. ++.++..
T Consensus 78 ~~~l~~~g~~~viigHsErR~~~~e~~~~~~~~~~~--gl~~iv-cvge~~~~~~~~~~~~~iIayep~waIGtg~~--- 151 (226)
T d1w0ma_ 78 LENIKEAGGSGVILNHSEAPLKLNDLARLVAKAKSL--GLDVVV-CAPDPRTSLAAAALGPHAVAVEPPELIGTGRA--- 151 (226)
T ss_dssp HHHHHHHTCCEEEECCTTSCCBHHHHHHHHHHHHHT--TCEEEE-EESSHHHHHHHHHTCCSEEEECCGGGTTTSCC---
T ss_pred HhhhcccccceEEeechhhhhhccchHHHHHHHHHc--CCEEEE-ecCchHHhhhhhccccceeeecchhhccCCCC---
Confidence 456778899998875444211 2234455555544 454444 578889999999999998833 1111111
Q ss_pred cccccc-chhHHHHHHHHHhc--CCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCC
Q psy1056 409 MQVIGR-NGTAVYRVAEYASR--RGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGT 465 (590)
Q Consensus 409 ~~~~g~-~~~~l~~~~~~~~~--~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~ 465 (590)
. .. .+..+....+...+ .++||+.+|||.++.++..++.+|||+|.+|++++.+
T Consensus 152 ~---~~~~~~~i~~~i~~~~~~~~~i~vlygGgV~~~n~~~~~~~~g~dGvLVGsA~l~a 208 (226)
T d1w0ma_ 152 V---SRYKPEAIVETVGLVSRHFPEVSVITGAGIESGDDVAAALRLGTRGVLLASAAVKA 208 (226)
T ss_dssp H---HHHCHHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHTC
T ss_pred C---ChhhhhHhhhhhhhhhccCCCceEEEecCcCChHHHHHHhcCCCCEEEechheecC
Confidence 0 00 11122222222212 3699999999999999999999999999999988644
|
| >d1mzha_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Aquifex aeolicus [TaxId: 63363]
Probab=97.34 E-value=0.0018 Score=59.98 Aligned_cols=121 Identities=16% Similarity=0.083 Sum_probs=81.7
Q ss_pred HHHHHHHHcCCcEEEEecC-----CCchhhHHHHHHHHHHhCCCce--EEecccc--CcH----HHHHHHHCCCCEEEEc
Q psy1056 333 NRLKLLSQAGVDVVILDSS-----QGNSIYQIEMIKFIKKEYPDMQ--VIGGNVL--FGY----QPRATLLNFIYQIEMI 399 (590)
Q Consensus 333 e~~~~li~~gad~i~V~~~-----~G~~~~~l~~i~~i~~~~~~vp--vi~g~v~--s~~----~a~~l~~~Gvd~i~v~ 399 (590)
..++..++.|++-+-+..+ .|+...+.+.++.++...++.+ ||+ +.. +.+ .++.++++|+|+|+.|
T Consensus 74 ~E~~~Ai~~GAdEID~Vin~~~l~~g~~~~v~~ei~~v~~~~~~~~lKVIl-Et~~L~~~ei~~a~~~a~~aGadfiKTS 152 (225)
T d1mzha_ 74 KEAVEAVRDGAQELDIVWNLSAFKSEKYDFVVEELKEIFRETPSAVHKVIV-ETPYLNEEEIKKAVEICIEAGADFIKTS 152 (225)
T ss_dssp HHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHTCTTSEEEEEC-CGGGCCHHHHHHHHHHHHHHTCSEEECC
T ss_pred HHHHHHHHcCCCeEEEeechhhhhcccHHHHHHHHHHHHHhccCceeehhh-hhccCCHHHHHHHHHHHHHcccceEeec
Confidence 4567788899998765443 3555667777888877664433 333 222 333 3455677999999322
Q ss_pred ccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 400 KFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 400 ~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
|+ |...|.++..+..+++.... .+.|=++|||||..++.+.+.+||+.++..+.+
T Consensus 153 --TG-----~~~~gat~e~v~~m~~~~~~-~~~iKasGGIrt~~~a~~~i~~Ga~RiGtSs~~ 207 (225)
T d1mzha_ 153 --TG-----FAPRGTTLEEVRLIKSSAKG-RIKVKASGGIRDLETAISMIEAGADRIGTSSGI 207 (225)
T ss_dssp --CS-----CSSSCCCHHHHHHHHHHHTT-SSEEEEESSCCSHHHHHHHHHTTCSEEEESCHH
T ss_pred --CC-----CCCCCCCHHHHHHHHHHhCC-CceEECcCCCCCHHHHHHHHHhchhheecCcHH
Confidence 11 32233466666666666543 589999999999999999999999988666544
|
| >d1hg3a_ c.1.1.1 (A:) Triosephosphate isomerase {Archaeon Pyrococcus woesei [TaxId: 2262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Archaeon Pyrococcus woesei [TaxId: 2262]
Probab=97.26 E-value=0.0019 Score=60.04 Aligned_cols=122 Identities=13% Similarity=0.088 Sum_probs=77.1
Q ss_pred HHHHHHcCCcEEEEecCCCch--hhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEE----cccccccCCC
Q psy1056 335 LKLLSQAGVDVVILDSSQGNS--IYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEM----IKFIKKEYPD 408 (590)
Q Consensus 335 ~~~li~~gad~i~V~~~~G~~--~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v----~~~~~~~~~~ 408 (590)
...+.+.|++.+.+.-++... ....+.+....+. +..+++ .++....++.+.+.+.+.|-. ++.++..
T Consensus 80 ~~~l~~~g~~~~iiGHSErr~~~~e~~~~i~~~~~~--gl~~i~-cv~~~~~~~~~~~~~~~iiAyEpvwaIGtg~~--- 153 (224)
T d1hg3a_ 80 PEAVKEAGAVGTLLNHSENRMILADLEAAIRRAEEV--GLMTMV-CSNNPAVSAAVAALNPDYVAVEPPELIGTGIP--- 153 (224)
T ss_dssp HHHHHHTTCCEEEESCGGGCCBHHHHHHHHHHHHHH--TCEEEE-EESSHHHHHHHHTTCCSEEEECCTTTTTTSCC---
T ss_pred hhhccccCcceeeeccccccccccchhHHHHHHHHc--CCceee-chhhHHHHHhhhhcccceEEecchHhhccccC---
Confidence 455778899999885443211 1123444544444 344433 467788889999999887743 2222211
Q ss_pred cccccc-chhHHHHHHHHHh--cCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCC
Q psy1056 409 MQVIGR-NGTAVYRVAEYAS--RRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGT 465 (590)
Q Consensus 409 ~~~~g~-~~~~l~~~~~~~~--~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~ 465 (590)
. .. .+..+....+..+ ..++||+.+|||.++.|+..++.+|||+|.+|+.++.+
T Consensus 154 ~---~~~~~~~i~~~i~~i~~~~~~v~vlygGsV~~~n~~~~~~~~g~dGvLVGsAsl~a 210 (224)
T d1hg3a_ 154 V---SKAKPEVITNTVELVKKVNPEVKVLCGAGISTGEDVKKAIELGTVGVLLASGVTKA 210 (224)
T ss_dssp T---TTSCTHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEESHHHHTC
T ss_pred C---CchhhhhhhhhhhhhhhhccccceEEeCCcCCHHHHHHHHhCCCCEEEEcceeecC
Confidence 0 01 2222333322222 23599999999999999999999999999999988654
|
| >d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Thermotoga maritima [TaxId: 2336]
Probab=97.25 E-value=0.00024 Score=67.23 Aligned_cols=127 Identities=11% Similarity=0.023 Sum_probs=80.1
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCC---chhhHHHHHHHHHHhCCCceEEec-cccCcHHHHHHHHCCCCEEEE------
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQG---NSIYQIEMIKFIKKEYPDMQVIGG-NVLFGYQPRATLLNFIYQIEM------ 398 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G---~~~~~l~~i~~i~~~~~~vpvi~g-~v~s~~~a~~l~~~Gvd~i~v------ 398 (590)
.+..+.++.+.+.|++.+++-.-.+ ........+..+++. ..|+.+| ++.+.++++.+.+.|++.|.+
T Consensus 30 ~dP~~~a~~~~~~g~~~l~ivDLda~~~~~~~~~~~~~~~~~~--~~pl~~gGGI~s~~~~~~~~~~Ga~kVvi~s~~~~ 107 (241)
T d1qo2a_ 30 KDPVELVEKLIEEGFTLIHVVDLSNAIENSGENLPVLEKLSEF--AEHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLE 107 (241)
T ss_dssp SCHHHHHHHHHHTTCCCEEEEEHHHHHHCCCTTHHHHHHGGGG--GGGEEEESSCCSHHHHHHHHHTTCCEEEECHHHHH
T ss_pred CCHHHHHHHHHHCCCCEEEEEecccccccCCcchhheehhccc--ccchhhhhhhhhhhhhhhccccccceEecCccccc
Confidence 3456788889999999887643111 111112344444444 3576654 566999999999999999876
Q ss_pred -----------------ccc--ccccCCCcccc-----------------------------------ccchhHHHHHHH
Q psy1056 399 -----------------IKF--IKKEYPDMQVI-----------------------------------GRNGTAVYRVAE 424 (590)
Q Consensus 399 -----------------~~~--~~~~~~~~~~~-----------------------------------g~~~~~l~~~~~ 424 (590)
++. ..+. .+.+| |.....+ ..
T Consensus 108 ~~~~~~~~~~~~~~~~v~iD~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~g~~eii~~dId~dGt~~G~d~~l~---~~ 182 (241)
T d1qo2a_ 108 DPSFLKSLREIDVEPVFSLDTRGGRV--AFKGWLAEEEIDPVSLLKRLKEYGLEEIVHTEIEKDGTLQEHDFSLT---KK 182 (241)
T ss_dssp CTTHHHHHHTTTCEEEEEEEEETTEE--CCTTCSSCSCCCHHHHHHHHHTTTCCEEEEEETTHHHHTCCCCHHHH---HH
T ss_pred Cchhhhhhcccccceeeecccccccc--cccCcccceeeehhHHHHHhhccccceEEEeehhhhhhccccchhhh---hh
Confidence 000 0000 01111 1111122 22
Q ss_pred HHhcCCCcEEecCCCCCHHHHHHHHHcC------CCEEEECccc
Q psy1056 425 YASRRGVPVIADGGVQSVGHVMKALALG------ASTAMMGSLL 462 (590)
Q Consensus 425 ~~~~~~v~iia~GGi~~~~di~kalalG------A~~v~~g~~l 462 (590)
.....++|+|++||+++..|+.++..+| +++|.+|++|
T Consensus 183 i~~~~~~pvi~~GGv~s~~di~~l~~ig~~~~~~~~gvivG~al 226 (241)
T d1qo2a_ 183 IAIEAEVKVLAAGGISSENSLKTAQKVHTETNGLLKGVIVGRAF 226 (241)
T ss_dssp HHHHHTCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEEEECHHH
T ss_pred hhccCCceEEEECCCCCHHHHHHHHHccccccCCEeeEEEHHHH
Confidence 2233469999999999999999998876 7899999988
|
| >d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.19 E-value=0.00023 Score=71.19 Aligned_cols=73 Identities=33% Similarity=0.557 Sum_probs=68.1
Q ss_pred CcchHHHHHHHHHcCCcEEEEcCCCCchHHHHHHHHHhhhcCCCcccccccccchHHHHHHHHHhcccccccc
Q psy1056 135 READKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGLRVGS 207 (590)
Q Consensus 135 ~~d~~~~~~~l~~~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~im~~~~~~~~~~~~a~~~m~~~~~v~~ 207 (590)
.+++.+++..++++++|++++|.+|++...+.+.++++|..+|...+|..|+.+.+...++.+..||+|+||+
T Consensus 105 ~~~~~er~~~l~~agvd~ivID~A~G~s~~~~~~i~~ik~~~~~~~iIaGNV~T~e~a~~L~~aGaD~VkVGi 177 (365)
T d1zfja1 105 TSDTFERAEALFEAGADAIVIDTAHGHSAGVLRKIAEIRAHFPNRTLIAGNIATAEGARALYDAGVDVVKVGI 177 (365)
T ss_dssp STTHHHHHHHHHHHTCSEEEECCSCTTCHHHHHHHHHHHHHCSSSCEEEEEECSHHHHHHHHHTTCSEEEECS
T ss_pred CchHHHHHHHHHHcCCCEEEEECCcccccchhHHHHHHHhhCCCcceeecccccHHHHHHHHhcCCceEEeee
Confidence 3467899999999999999999999999999999999998889888999999999999999999999999996
|
| >d1vyra_ c.1.4.1 (A:) Pentaerythritol tetranirate reductase {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Pentaerythritol tetranirate reductase species: Enterobacter cloacae [TaxId: 550]
Probab=97.10 E-value=0.0028 Score=63.26 Aligned_cols=127 Identities=14% Similarity=0.059 Sum_probs=81.7
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCC--------------------ch----hhHHHHHHHHHHhCCCceEEec--------
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQG--------------------NS----IYQIEMIKFIKKEYPDMQVIGG-------- 377 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G--------------------~~----~~~l~~i~~i~~~~~~vpvi~g-------- 377 (590)
...+.+....++|.|.|.|+.+|| .. ++.++.++.+++.+++-++.+.
T Consensus 161 ~f~~AA~rA~~aGfDgVEIH~ahGYLl~qFlSp~~N~RtDeYGGs~eNR~Rf~~Eii~aIr~~~g~d~i~~r~s~~~~~~ 240 (363)
T d1vyra_ 161 DFRQAVANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTFQ 240 (363)
T ss_dssp HHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHSCGGGEEEEECCSSCBT
T ss_pred HHHHHHHHHHHhccceeeecccCceeeeeeecCcccccccccccchhhhhHhHHHHHhhhhhhcCCCCcceeeccccccc
Confidence 344577888899999999997652 11 3457889999999865443211
Q ss_pred c----ccCcHH----HHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHH
Q psy1056 378 N----VLFGYQ----PRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKAL 449 (590)
Q Consensus 378 ~----v~s~~~----a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kal 449 (590)
+ ..+.++ ++.|.++|+|++.++...... +-+++. .+... .....++|+++.| +.|+..+.++|
T Consensus 241 ~~~~gg~~~~e~~~~~~~l~~~gvd~i~vs~~~~~~-----~~~~~~-~~~~~--~~~~~~~~vi~~G-~~t~~~ae~~l 311 (363)
T d1vyra_ 241 NVDNGPNEEADALYLIEELAKRGIAYLHMSETDLAG-----GKPYSE-AFRQK--VRERFHGVIIGAG-AYTAEKAEDLI 311 (363)
T ss_dssp TBCCCTTHHHHHHHHHHHHHHTTCSEEEEECCBTTB-----CCCCCH-HHHHH--HHHHCCSEEEEES-SCCHHHHHHHH
T ss_pred chhhcccchHHHHHHHHHHHhcCCeeeecccCCccC-----CccccH-HHHHH--HHHhcCceEEecC-CCCHHHHHHHH
Confidence 1 112333 467778999999885322211 112221 22221 1123457888755 56999999999
Q ss_pred HcC-CCEEEECccccCC
Q psy1056 450 ALG-ASTAMMGSLLAGT 465 (590)
Q Consensus 450 alG-A~~v~~g~~l~~~ 465 (590)
+-| ||+|.+|++|..-
T Consensus 312 ~~G~~DlV~~gR~liad 328 (363)
T d1vyra_ 312 GKGLIDAVAFGRDYIAN 328 (363)
T ss_dssp HTTSCSEEEESHHHHHC
T ss_pred HCCCcceehhhHHHHHC
Confidence 999 8999999988643
|
| >d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Thermus thermophilus [TaxId: 274]
Probab=97.09 E-value=0.0057 Score=55.87 Aligned_cols=119 Identities=18% Similarity=0.130 Sum_probs=80.5
Q ss_pred HHHHHHHHcCCcEEEEecC-----CCchhhHHHHHHHHHHhCCCc--eEEecccc--CcHHH----HHHHHCCCCEEEEc
Q psy1056 333 NRLKLLSQAGVDVVILDSS-----QGNSIYQIEMIKFIKKEYPDM--QVIGGNVL--FGYQP----RATLLNFIYQIEMI 399 (590)
Q Consensus 333 e~~~~li~~gad~i~V~~~-----~G~~~~~l~~i~~i~~~~~~v--pvi~g~v~--s~~~a----~~l~~~Gvd~i~v~ 399 (590)
..++..++.|++-+-+..+ .|+...+.+.+..+++..++. .+|+ +.. +.+.. +.+.++|+|+|+.|
T Consensus 74 ~e~~~ai~~GA~EiD~V~n~~~~~~g~~~~v~~ei~~v~~~~~~~~lKVIl-Et~~L~~~ei~~a~~~a~~aGadfiKTS 152 (211)
T d1ub3a_ 74 LEAALACARGADEVDMVLHLGRAKAGDLDYLEAEVRAVREAVPQAVLKVIL-ETGYFSPEEIARLAEAAIRGGADFLKTS 152 (211)
T ss_dssp HHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHSTTSEEEEEC-CGGGSCHHHHHHHHHHHHHHTCSEEECC
T ss_pred HHHHHHHHcCCCeEEEeeccchhhcCCHHHHHHHHHHHHHhccCCceEEEe-ccccCCHHHHHHHHHHHHHhccceEEec
Confidence 4677788899998765442 466667777888888876543 3443 222 44443 45667999999322
Q ss_pred ccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECc
Q psy1056 400 KFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGS 460 (590)
Q Consensus 400 ~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~ 460 (590)
| . |...|.++..+..+++.... .+.|=++|||||..++.+-+.+||+-+...+
T Consensus 153 --T--G---~~~~gat~e~v~~m~~~~~~-~~~iKasGGIrt~~~a~~~l~aGa~riGtSs 205 (211)
T d1ub3a_ 153 --T--G---FGPRGASLEDVALLVRVAQG-RAQVKAAGGIRDRETALRMLKAGASRLGTSS 205 (211)
T ss_dssp --C--S---SSSCCCCHHHHHHHHHHHTT-SSEEEEESSCCSHHHHHHHHHTTCSEEEETT
T ss_pred --C--C---CCCCCCCHHHHHHHHHHhCC-CceEECcCCCCCHHHHHHHHHHhhhHhccCc
Confidence 1 1 22223366666666666543 5888899999999999999999999875443
|
| >d1ujpa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Thermus thermophilus [TaxId: 274]
Probab=97.09 E-value=0.00078 Score=64.16 Aligned_cols=130 Identities=13% Similarity=0.035 Sum_probs=76.9
Q ss_pred hHHHHHHHHHHcCCcEEEEecCC--------------------Cch-hhHHHHHHHHHHhCCCceEEe-c--ccc----C
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQ--------------------GNS-IYQIEMIKFIKKEYPDMQVIG-G--NVL----F 381 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~--------------------G~~-~~~l~~i~~i~~~~~~vpvi~-g--~v~----s 381 (590)
...+.++.+. .|+|++.+-.+. |.. ..+++.++.+++.. +.|+++ + |.. -
T Consensus 31 ~~~~~l~~l~-~gaDiiElGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~~r~~~-~~pivlm~Y~N~i~~~G~ 108 (271)
T d1ujpa_ 31 GFLQAVEEVL-PYADLLEIGLPYSDPLGDGPVIQRASELALRKGMSVQGALELVREVRALT-EKPLFLMTYLNPVLAWGP 108 (271)
T ss_dssp HHHHHHHHHG-GGCSSEEEECCCCC----CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-CSCEEEECCHHHHHHHCH
T ss_pred HHHHHHHHHH-cCCCEEEeCCCCCCcccCCCeeeeeeeeccccccchhhHHHHHHHHhccc-CCcEEEEeechhhhhCCc
Confidence 4456666664 499999886532 222 44577888888876 678763 1 221 2
Q ss_pred cHHHHHHHHCCCCEEEE--------------------------ccccccc--------CCC---------cccccc-chh
Q psy1056 382 GYQPRATLLNFIYQIEM--------------------------IKFIKKE--------YPD---------MQVIGR-NGT 417 (590)
Q Consensus 382 ~~~a~~l~~~Gvd~i~v--------------------------~~~~~~~--------~~~---------~~~~g~-~~~ 417 (590)
..-++++.++|+|++.+ +..++.. .+| .+|... ...
T Consensus 109 ~~F~~~~~~aGvdGliipDLP~ee~~~~~~~~~~~gl~~I~lvsPtT~~eRi~~i~~~s~GFIY~Vs~~GvTG~~~~~~~ 188 (271)
T d1ujpa_ 109 ERFFGLFKQAGATGVILPDLPPDEDPGLVRLAQEIGLETVFLLAPTSTDARIATVVRHATGFVYAVSVTGVTGMRERLPE 188 (271)
T ss_dssp HHHHHHHHHHTCCEEECTTCCGGGCHHHHHHHHHHTCEEECEECTTCCHHHHHHHHTTCCSCEEEECC------------
T ss_pred hhHhHHHhhcCceeEeccchhhhhHHHHHHHhhccccceeeccCCCcchHHHHHHHHhCcchhhhhcccCccCccccchH
Confidence 33467888899999987 1111100 001 122111 111
Q ss_pred HHHH-HHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 418 AVYR-VAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 418 ~l~~-~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
.+.+ +.......++|++...||+++.|+.++ .|||+|++|++|.
T Consensus 189 ~~~~~i~~ik~~t~~Pv~vGFGIs~~e~v~~~--~~ADGvIVGSAiV 233 (271)
T d1ujpa_ 189 EVKDLVRRIKARTALPVAVGFGVSGKATAAQA--AVADGVVVGSALV 233 (271)
T ss_dssp CCHHHHHHHHTTCCSCEEEESCCCSHHHHHHH--TTSSEEEECHHHH
T ss_pred HHHHHHHhhhccccCCeEEeCCCCCHHHHHHh--CCCCEEEEcHHHH
Confidence 1222 222222346999999999999998764 5999999999983
|
| >d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: 3-keto-L-gulonate 6-phosphate decarboxylase species: Escherichia coli [TaxId: 562]
Probab=97.04 E-value=0.0022 Score=58.45 Aligned_cols=126 Identities=11% Similarity=0.013 Sum_probs=79.8
Q ss_pred HHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccccc
Q psy1056 334 RLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIG 413 (590)
Q Consensus 334 ~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g 413 (590)
....+.++|+|.+.++...|. ..+...++..++.-....+..-...+.+.+..+.+.|++.+.+....... +.+..
T Consensus 70 ~~~~~~~~gad~vtvh~~~g~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~ 145 (213)
T d1q6oa_ 70 LSRMCFEANADWVTVICCADI-NTAKGALDVAKEFNGDVQIELTGYWTWEQAQQWRDAGIGQVVYHRSRDAQ---AAGVA 145 (213)
T ss_dssp HHHHHHHTTCSEEEEETTSCH-HHHHHHHHHHHHTTCEEEEEECSCCCHHHHHHHHHTTCCEEEEECCHHHH---HTTCC
T ss_pred HHHHHHHcCCCEEEEeccCCc-hHHHHHHHHHHHcCCceecccCCCCCHHHHHHHHHhHHHHHHHHHhcccC---cCCee
Confidence 456677889999999866552 23334444444432112233345558888999999999988442111111 21111
Q ss_pred cchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCC
Q psy1056 414 RNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGT 465 (590)
Q Consensus 414 ~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~ 465 (590)
.....+..+++.. ..+.++..+||+ ++.++.+++..|||.+++||++..+
T Consensus 146 ~~~~~l~~i~~~~-~~~~~i~~~gGi-~~~~~~~~~~~Gad~iVVGr~I~~a 195 (213)
T d1q6oa_ 146 WGEADITAIKRLS-DMGFKVTVTGGL-ALEDLPLFKGIPIHVFIAGRSIRDA 195 (213)
T ss_dssp CCHHHHHHHHHHH-HTTCEEEEESSC-CGGGGGGGTTSCCSEEEESHHHHTS
T ss_pred CCHHHHHHHHHhh-ccCceEecCCCc-CcCCHHHHHHcCCCEEEEChhhcCC
Confidence 1333444555443 346889999998 5788999999999999999998554
|
| >d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.99 E-value=0.0019 Score=59.69 Aligned_cols=130 Identities=14% Similarity=0.120 Sum_probs=83.9
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCch----hhHHHHHHHHHHhCCCceE----EeccccCcHHHHHHHHCCCCEEEEcc
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQGNS----IYQIEMIKFIKKEYPDMQV----IGGNVLFGYQPRATLLNFIYQIEMIK 400 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G~~----~~~l~~i~~i~~~~~~vpv----i~g~v~s~~~a~~l~~~Gvd~i~v~~ 400 (590)
....+.++.+.++|++.+|+|...|+. ..-.+.++.+++.. +.|+ ++.+. ..-..++.++|+|.|.+-.
T Consensus 14 ~~l~~~i~~~~~~g~d~iHiDimDg~Fvpn~s~g~~~i~~i~~~t-~~~~dvHLMv~~P--~~~i~~~~~~ga~~i~~H~ 90 (217)
T d2flia1 14 ANFASELARIEETDAEYVHIDIMDGQFVPNISFGADVVASMRKHS-KLVFDCHLMVVDP--ERYVEAFAQAGADIMTIHT 90 (217)
T ss_dssp GGHHHHHHHHHHTTCCEEEEEEEBSSSSSCBCBCHHHHHHHHTTC-CSEEEEEEESSSG--GGGHHHHHHHTCSEEEEEG
T ss_pred HHHHHHHHHHHHcCCCEEEEEcccCcCCCccccCHHHHHHHHhcC-CCceEeEEEecCH--HHHHHHHHHcCCcEEEecc
Confidence 355677888889999999999766543 11256777777654 4443 33332 2357788889999987711
Q ss_pred ccccc------------------------------C----C---------CccccccchhH---HHHHHHHHhc--CCCc
Q psy1056 401 FIKKE------------------------------Y----P---------DMQVIGRNGTA---VYRVAEYASR--RGVP 432 (590)
Q Consensus 401 ~~~~~------------------------------~----~---------~~~~~g~~~~~---l~~~~~~~~~--~~v~ 432 (590)
+++.. . + |+.|......+ +.++++.... .+++
T Consensus 91 E~~~~~~~~i~~i~~~g~~~Gial~p~T~~~~~~~~l~~id~vliM~V~pG~~Gq~f~~~~~~ki~~l~~~~~~~~~~~~ 170 (217)
T d2flia1 91 ESTRHIHGALQKIKAAGMKAGVVINPGTPATALEPLLDLVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFD 170 (217)
T ss_dssp GGCSCHHHHHHHHHHTTSEEEEEECTTSCGGGGGGGTTTCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHHHHTTCCCE
T ss_pred ccccCHHHHHHHHHhcCCeEEEEecCCcchhHHHhHHhhcCEEEEEEEcCcccccccchhhHHHHHHHHHHHHhcCCCeE
Confidence 11100 0 0 34443333333 4455555443 3578
Q ss_pred EEecCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 433 VIADGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 433 iia~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
|..||||+ ...+.+...+|||.+++|+.+
T Consensus 171 I~vDGGIn-~~~i~~l~~aGad~~V~Gsai 199 (217)
T d2flia1 171 IEVDGGVD-NKTIRACYEAGANVFVAGSYL 199 (217)
T ss_dssp EEEESSCC-TTTHHHHHHHTCCEEEESHHH
T ss_pred EEEeCCCC-HHHHHHHHHCCCCEEEEchHH
Confidence 99999995 567888999999999999877
|
| >d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.99 E-value=0.0039 Score=58.53 Aligned_cols=123 Identities=16% Similarity=0.103 Sum_probs=71.3
Q ss_pred HHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEE--eccccCcHHHHHHHHCCCCEEEEcccccccCCCc
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVI--GGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDM 409 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi--~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~ 409 (590)
.+.++.+.++|++.+.+-.-.. +...+..+.+++. +...+ +--..+.+-.++..+..-.+|.+ ..+. |.
T Consensus 98 ~~f~~~~~~~Gv~GliipDLP~--eE~~~~~~~~~~~--gl~~I~lvaPtt~~~ri~~i~~~s~gFiY~---vs~~--Gv 168 (248)
T d1geqa_ 98 RNFLAEAKASGVDGILVVDLPV--FHAKEFTEIAREE--GIKTVFLAAPNTPDERLKVIDDMTTGFVYL---VSLY--GT 168 (248)
T ss_dssp HHHHHHHHHHTCCEEEETTCCG--GGHHHHHHHHHHH--TCEEEEEECTTCCHHHHHHHHHHCSSEEEE---ECCC----
T ss_pred HHHhhhhcccCeeEEeccCCcH--HHHHHHHhhcccc--CcceEEEecccchhHHHHHHHhcCCCeEEE---Eecc--cc
Confidence 4567788899999877633211 2223344445554 33322 22344556666666655555632 1111 23
Q ss_pred ccccc-chhHHHHHHHHH-hcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 410 QVIGR-NGTAVYRVAEYA-SRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 410 ~~~g~-~~~~l~~~~~~~-~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
+|... ....+.+..+.+ +..++|++...||+|+.|+.+++..|||+|.+|++|.
T Consensus 169 TG~~~~~~~~~~~~v~~vk~~t~~Pv~vGFGI~~~e~v~~~~~~~ADGvIVGSaiv 224 (248)
T d1geqa_ 169 TGAREEIPKTAYDLLRRAKRICRNKVAVGFGVSKREHVVSLLKEGANGVVVGSALV 224 (248)
T ss_dssp -----CCCHHHHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEECHHHH
T ss_pred cccchhhhhhHHHHHHHHhhhcccceeeecccCCHHHHHHHHhcCCCEEEECHHHH
Confidence 33332 222333322222 2246999999999999999999999999999999883
|
| >d1o0ya_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Thermotoga maritima [TaxId: 2336]
Probab=96.95 E-value=0.0061 Score=57.10 Aligned_cols=120 Identities=15% Similarity=0.083 Sum_probs=78.8
Q ss_pred HHHHHHHHcCCcEEEEecC-----CCchhhHHHHHHHHHHhCCCc--eEEecccc-CcH----HHHHHHHCCCCEEEEcc
Q psy1056 333 NRLKLLSQAGVDVVILDSS-----QGNSIYQIEMIKFIKKEYPDM--QVIGGNVL-FGY----QPRATLLNFIYQIEMIK 400 (590)
Q Consensus 333 e~~~~li~~gad~i~V~~~-----~G~~~~~l~~i~~i~~~~~~v--pvi~g~v~-s~~----~a~~l~~~Gvd~i~v~~ 400 (590)
..++..++.|++-+-+..+ .|+...+.+.++.+++..++. .+|+-... +.+ .++.+.++|+|+|+.|
T Consensus 107 ~Ea~~Ai~~GAdEID~Vin~~~l~~g~~~~v~~ei~~v~~~~~~~~lKVIlEt~~L~~~e~~~a~~ia~~aGadfvKTS- 185 (251)
T d1o0ya_ 107 HEAIFAVESGADEIDMVINVGMLKAKEWEYVYEDIRSVVESVKGKVVKVIIETCYLDTEEKIAACVISKLAGAHFVKTS- 185 (251)
T ss_dssp HHHHHHHHHTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCGGGCCHHHHHHHHHHHHHTTCSEEECC-
T ss_pred HHHHHHHHcCCceEEEEeccchhhcCCHHHHHHHHHHHHHHhcccceeeeecccccCcHHHHHHHHHHHHhCcceeecc-
Confidence 4577788899998765443 366667778888888775433 34432111 222 3455677999999322
Q ss_pred cccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECc
Q psy1056 401 FIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGS 460 (590)
Q Consensus 401 ~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~ 460 (590)
.. |...|.++..+..+.+... ..+.|=++|||||..|+.+.+.+||+.+...+
T Consensus 186 ---TG---f~~~gat~e~V~~m~~~~~-~~~giKasGGIrt~~~a~~~i~aGa~riGtSs 238 (251)
T d1o0ya_ 186 ---TG---FGTGGATAEDVHLMKWIVG-DEMGVKASGGIRTFEDAVKMIMYGADRIGTSS 238 (251)
T ss_dssp ---CS---SSSCCCCHHHHHHHHHHHC-TTSEEEEESSCCSHHHHHHHHHTTCSEEEESC
T ss_pred ---CC---CCCCCcCHHHHHHHHHHhC-CCceEeccCCcCCHHHHHHHHHHhhHHhCCCc
Confidence 11 3222336666655555543 35889999999999999999999999874433
|
| >d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=96.90 E-value=0.0042 Score=57.78 Aligned_cols=122 Identities=17% Similarity=0.087 Sum_probs=68.8
Q ss_pred HHHHHHHHHcCCcEEEEecCCCc-hhhHHHHHHH---HHHhCC-CceEEeccc-cCcHHHH----HHHHCCCCEEEEccc
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGN-SIYQIEMIKF---IKKEYP-DMQVIGGNV-LFGYQPR----ATLLNFIYQIEMIKF 401 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~-~~~~l~~i~~---i~~~~~-~vpvi~g~v-~s~~~a~----~l~~~Gvd~i~v~~~ 401 (590)
...++..++.|++-+-+...-+. ..+..+.+.. ..+..+ .+.+|+-.. .+.+... .+.++|+|+|+-|
T Consensus 91 ~~E~~~Ai~~GAdEID~Vin~~~~~~~~~~ev~~~~~~~~~~g~~lKVIlEt~~L~~~~i~~a~~~a~~aGadFVKTS-- 168 (234)
T d1n7ka_ 91 LVEAQTVLEAGATELDVVPHLSLGPEAVYREVSGIVKLAKSYGAVVKVILEAPLWDDKTLSLLVDSSRRAGADIVKTS-- 168 (234)
T ss_dssp HHHHHHHHHHTCCEEEECCCGGGCHHHHHHHHHHHHHHHHHTTCEEEEECCGGGSCHHHHHHHHHHHHHTTCSEEESC--
T ss_pred HHHHHHHHHcCCCeEEEEechhhhhhhhHHHHHHHHHHHhccCceEEEEEeccccchHHHHHHHHHHHHhhhhheeec--
Confidence 34677778889997655433221 1222222222 222321 244444221 1444443 4556999999321
Q ss_pred ccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECc
Q psy1056 402 IKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGS 460 (590)
Q Consensus 402 ~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~ 460 (590)
|+ |...|.++..+..+.+.....++.|=++|||||..|+.+.+.+||+-+...+
T Consensus 169 TG-----~~~~gat~~~~~~l~~~~~~~~vgIKasGGIrt~~~a~~~i~aGa~rIGtSs 222 (234)
T d1n7ka_ 169 TG-----VYTKGGDPVTVFRLASLAKPLGMGVKASGGIRSGIDAVLAVGAGADIIGTSS 222 (234)
T ss_dssp CS-----SSCCCCSHHHHHHHHHHHGGGTCEEEEESSCCSHHHHHHHHHTTCSEEEETT
T ss_pred cc-----ccCCCCCHHHHHHHHHHhcCCCCcEEeeCCcCCHHHHHHHHHccCceeecch
Confidence 11 2222224444444444444446899999999999999999999999764444
|
| >d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Escherichia coli [TaxId: 562]
Probab=96.84 E-value=0.0013 Score=60.35 Aligned_cols=165 Identities=17% Similarity=0.108 Sum_probs=103.4
Q ss_pred EcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCCCCCCcccCCceEEeEeeccchhHHHHHHHHHHcC
Q psy1056 263 AQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAG 342 (590)
Q Consensus 263 v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~g 342 (590)
....+...+..+.+.+.+++.+=|.-.... ..+.++.. ++..+++.+++.-= ...+.++..+++|
T Consensus 23 ~~~~~~a~~~~~al~~~Gi~~iEitl~tp~------a~~~I~~l------~~~~p~~~vGaGTV---~~~~~~~~a~~aG 87 (213)
T d1wbha1 23 VKKLEHAVPMAKALVAGGVRVLNVTLRTEC------AVDAIRAI------AKEVPEAIVGAGTV---LNPQQLAEVTEAG 87 (213)
T ss_dssp CSSGGGHHHHHHHHHHTTCCEEEEESCSTT------HHHHHHHH------HHHCTTSEEEEESC---CSHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeCCChh------HHHHHHHH------HHHCCCCeeecccc---ccHHHHHHHHHCC
Confidence 344455666777788888887766532110 01122211 22334455553321 2246677889999
Q ss_pred CcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHH
Q psy1056 343 VDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRV 422 (590)
Q Consensus 343 ad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~ 422 (590)
+++++ +.+.. .+.++..++. ++|++- ++.|+.++..+.++|++.+++-+..... ...-+..+
T Consensus 88 a~Fiv---SP~~~---~~v~~~a~~~--~i~~iP-Gv~TpsEi~~A~~~G~~~vKlFPA~~~G---------g~~~lkal 149 (213)
T d1wbha1 88 AQFAI---SPGLT---EPLLKAATEG--TIPLIP-GISTVSELMLGMDYGLKEFKFFPAEANG---------GVKALQAI 149 (213)
T ss_dssp CSCEE---ESSCC---HHHHHHHHHS--SSCEEE-EESSHHHHHHHHHTTCCEEEETTTTTTT---------HHHHHHHH
T ss_pred CcEEE---CCCCC---HHHHHHHHhc--CCCccC-CcCCHHHHHHHHHCCCCEEEeccchhcC---------hHHHHHHh
Confidence 99986 22322 4556666665 677765 7899999999999999999773322111 11112222
Q ss_pred HHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 423 AEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 423 ~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
..-. .++++++.||| +..++..=|.+|+.++++|+.+.
T Consensus 150 ~~p~--p~~~~~ptGGV-~~~n~~~yl~~g~v~~~~Gs~l~ 187 (213)
T d1wbha1 150 AGPF--SQVRFCPTGGI-SPANYRDYLALKSVLCIGGSWLV 187 (213)
T ss_dssp HTTC--TTCEEEEBSSC-CTTTHHHHHTSTTBSCEEEGGGS
T ss_pred cCcc--cCCceeeeCCC-CHHHHHHHHhCCCEEEEEChhhC
Confidence 2221 25899999999 56899999999999999999883
|
| >d2tpsa_ c.1.3.1 (A:) Thiamin phosphate synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Thiamin phosphate synthase family: Thiamin phosphate synthase domain: Thiamin phosphate synthase species: Bacillus subtilis [TaxId: 1423]
Probab=96.81 E-value=0.0022 Score=59.65 Aligned_cols=114 Identities=12% Similarity=0.139 Sum_probs=72.1
Q ss_pred HHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcc-cccccCCCcccccc-c
Q psy1056 338 LSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIK-FIKKEYPDMQVIGR-N 415 (590)
Q Consensus 338 li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~-~~~~~~~~~~~~g~-~ 415 (590)
..+.++|.+|+...... +...+..+++ .++...+.+.++++.+.+.|+||+-++. ..+..+++. ... .
T Consensus 89 A~~~~adGvHl~~~d~~-------~~~~r~~~~~-~iig~S~h~~~e~~~a~~~g~DYi~~gpvf~T~sK~~~--~~~~~ 158 (226)
T d2tpsa_ 89 ALNLKADGIHIGQEDAN-------AKEVRAAIGD-MILGVSAHTMSEVKQAEEDGADYVGLGPIYPTETKKDT--RAVQG 158 (226)
T ss_dssp HHHHTCSEEEECTTSSC-------HHHHHHHHTT-SEEEEEECSHHHHHHHHHHTCSEEEECCSSCCCSSSSC--CCCCT
T ss_pred HhhccCCEEEeccccch-------hhhhhhcccc-eeeeeeccchHHHHHHHhCcCCeEEEeccccccccccc--ccccc
Confidence 34457888887433221 2333444433 3555667799999999999999997733 222221111 011 1
Q ss_pred hhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccC
Q psy1056 416 GTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAG 464 (590)
Q Consensus 416 ~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~ 464 (590)
...+..+.. ...++|++|-||| |+.++.+++..||+++.+.+.+..
T Consensus 159 ~~~~~~~~~--~~~~~Pv~AiGGI-~~~ni~~l~~~Ga~giAvis~I~~ 204 (226)
T d2tpsa_ 159 VSLIEAVRR--QGISIPIVGIGGI-TIDNAAPVIQAGADGVSMISAISQ 204 (226)
T ss_dssp THHHHHHHH--TTCCCCEEEESSC-CTTTSHHHHHTTCSEEEESHHHHT
T ss_pred cchhHHHHH--hcCCCCEEEecCC-CHHHHHHHHHhCCCEEEEhHHhhc
Confidence 111222221 1246999999999 889999999999999988887754
|
| >d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Thermotoga maritima [TaxId: 2336]
Probab=96.76 E-value=0.001 Score=65.60 Aligned_cols=73 Identities=40% Similarity=0.702 Sum_probs=66.9
Q ss_pred CcchHHHHHHHHHcCCcEEEEcCCCCchHHHHHHHHHhhhcCCCcccccccccchHHHHHHHHHhcccccccc
Q psy1056 135 READKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEYPDMQVIGGNVVTTDQAKNLIDAGVDGLRVGS 207 (590)
Q Consensus 135 ~~d~~~~~~~l~~~~~dvv~~~~~~~~~~~~~~~v~~vk~~~~~~~im~~~~~~~~~~~~a~~~m~~~~~v~~ 207 (590)
.+++.+++..++++++|++++|.+|++.....+.+++++..+|+..++..++.+.+..+++.+..||+++||+
T Consensus 96 ~~~~~e~~~~li~agvd~ivId~A~G~~~~~~~~ik~ik~~~~~~~viaGnV~t~~~a~~l~~~GaD~v~VGi 168 (330)
T d1vrda1 96 SPETMERVEKLVKAGVDVIVIDTAHGHSRRVIETLEMIKADYPDLPVVAGNVATPEGTEALIKAGADAVKVGV 168 (330)
T ss_dssp STTHHHHHHHHHHTTCSEEEECCSCCSSHHHHHHHHHHHHHCTTSCEEEEEECSHHHHHHHHHTTCSEEEECS
T ss_pred CHHHHHHHHHHHHCCCCEEEEecCCCCchhHHHHHHHHHHhCCCCCEEeechhHHHHHHHHHHcCCCEEeecc
Confidence 3467889999999999999999999999999999999998888888999999998888999999999999985
|
| >d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Hypothetical protein HI0047 species: Haemophilus influenzae [TaxId: 727]
Probab=96.67 E-value=0.0028 Score=58.02 Aligned_cols=111 Identities=15% Similarity=0.202 Sum_probs=78.5
Q ss_pred HHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccc
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQV 411 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~ 411 (590)
.+.++..+++|+++++ +.+.. .+.++..++. ++|.+- ++.|+.++..+.++|++.+++-+.....
T Consensus 76 ~~~~~~a~~aGa~Fiv---SP~~~---~~v~~~a~~~--~i~~iP-Gv~TpsEi~~A~~~G~~~vK~FPA~~~g------ 140 (212)
T d1vhca_ 76 AEQVVLAKSSGADFVV---TPGLN---PKIVKLCQDL--NFPITP-GVNNPMAIEIALEMGISAVKFFPAEASG------ 140 (212)
T ss_dssp HHHHHHHHHHTCSEEE---CSSCC---HHHHHHHHHT--TCCEEC-EECSHHHHHHHHHTTCCEEEETTTTTTT------
T ss_pred HHHHHHHHhhCCcEEE---CCCCC---HHHHHHHHhc--CCCccC-CcCCHHHHHHHHHCCCCEEEEccccccc------
Confidence 4667788999999986 33333 3455555555 677765 7889999999999999999773322111
Q ss_pred cccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 412 IGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 412 ~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
| +.-+..+..-. .++++++.||| +..++..=|++|+.++++|+.|.
T Consensus 141 -G--~~~lkal~~p~--p~~~~~ptGGV-~~~N~~~yl~~g~v~~~~Gs~l~ 186 (212)
T d1vhca_ 141 -G--VKMIKALLGPY--AQLQIMPTGGI-GLHNIRDYLAIPNIVACGGSWFV 186 (212)
T ss_dssp -H--HHHHHHHHTTT--TTCEEEEBSSC-CTTTHHHHHTSTTBCCEEECGGG
T ss_pred -h--HHHHHHHhccc--cCCeEEecCCC-CHHHHHHHHhCCCEEEEEChhhC
Confidence 1 11122222221 25999999999 56889999999999999999884
|
| >d1gwja_ c.1.4.1 (A:) Morphinone reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Morphinone reductase species: Pseudomonas putida [TaxId: 303]
Probab=96.50 E-value=0.0069 Score=60.61 Aligned_cols=126 Identities=11% Similarity=0.035 Sum_probs=80.9
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCc-----------------------h-hhHHHHHHHHHHhCCCceEEec--------
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGN-----------------------S-IYQIEMIKFIKKEYPDMQVIGG-------- 377 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~-----------------------~-~~~l~~i~~i~~~~~~vpvi~g-------- 377 (590)
...+.+....++|.|.|.|+.++|+ + ++.++.++.+|+..++..+++.
T Consensus 164 ~f~~AA~rA~~AGfDgVEIH~ahGYLl~qFLSp~~N~RtDeYGGSlENR~Rf~~EIi~aIR~~vg~~~v~~r~~~~~~~~ 243 (374)
T d1gwja_ 164 DYRQAAQRAKRAGFDMVEVHAANACLPNQFLATGTNRRTDQYGGSIENRARFPLEVVDAVAEVFGPERVGIRLTPFLELF 243 (374)
T ss_dssp HHHHHHHHHHHTTCSEEEEEECTTCHHHHHHSTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECTTCCCT
T ss_pred HHHHHHHHHHHhCCCEEEeccchhhhHHHHHHhhcCccccccccchhhhhhhHHHHHHHHHHHcCCcceeeeeeeecccc
Confidence 3445678888999999999976531 1 3457889999988754333321
Q ss_pred ccc-------CcHHHHHHHHCCCCEEEEcccccccCCCcccccc-chhHHH-HHHHHHhcCCCcEEecCCCCCHHHHHHH
Q psy1056 378 NVL-------FGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGR-NGTAVY-RVAEYASRRGVPVIADGGVQSVGHVMKA 448 (590)
Q Consensus 378 ~v~-------s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~-~~~~l~-~~~~~~~~~~v~iia~GGi~~~~di~ka 448 (590)
+.. ..+.+..+...|++++.++-.. ..+... ....+. .++ +..++|||+.|++ ++..+.++
T Consensus 244 g~~~~~~~~~~~~~~~~ld~~~i~~~~~~~~~------~~~~~~~~~~~~~~~i~---~~~~~pvi~~G~i-~~~~ae~~ 313 (374)
T d1gwja_ 244 GLTDDEPEAMAFYLAGELDRRGLAYLHFNEPD------WIGGDITYPEGFREQMR---QRFKGGLIYCGNY-DAGRAQAR 313 (374)
T ss_dssp TCCCSCHHHHHHHHHHHHHHHTCSEEEEECSC------BTTBCCCCCTTHHHHHH---HHCCSEEEEESSC-CHHHHHHH
T ss_pred CCcccchHHHHHHhhccccccCceEEEeccCc------ccCCCcchhHHHHHHHH---HHcCCCEEEECCc-CHHHHHHH
Confidence 111 1222445666899999663111 111111 111122 233 2346899999999 89999999
Q ss_pred HHcC-CCEEEECccccCC
Q psy1056 449 LALG-ASTAMMGSLLAGT 465 (590)
Q Consensus 449 lalG-A~~v~~g~~l~~~ 465 (590)
|+-| ||+|+||++|..-
T Consensus 314 l~~g~aDlV~~gR~~iad 331 (374)
T d1gwja_ 314 LDDNTADAVAFGRPFIAN 331 (374)
T ss_dssp HHTTSCSEEEESHHHHHC
T ss_pred HHcCCCcEehhhHHHHHC
Confidence 9998 9999999988543
|
| >d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=96.42 E-value=0.009 Score=55.38 Aligned_cols=124 Identities=18% Similarity=0.103 Sum_probs=81.9
Q ss_pred HHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEE-cccccccCCCcc
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEM-IKFIKKEYPDMQ 410 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v-~~~~~~~~~~~~ 410 (590)
...++.+.++|++.+.++..........+.+.++++.--..-+....-...+....++.. +|+|-+ ++.. ||.
T Consensus 81 ~~~i~~~~~~g~~~i~~H~E~~~~~~~~~~i~~ik~~g~k~Gialnp~T~~~~l~~~l~~-vD~VllM~V~P-----Gf~ 154 (230)
T d1rpxa_ 81 DQRVPDFIKAGADIVSVHCEQSSTIHLHRTINQIKSLGAKAGVVLNPGTPLTAIEYVLDA-VDLVLIMSVNP-----GFG 154 (230)
T ss_dssp HHHHHHHHHTTCSEEEEECSTTTCSCHHHHHHHHHHTTSEEEEEECTTCCGGGGTTTTTT-CSEEEEESSCT-----TCS
T ss_pred hhhHHHHhhcccceeEEeccccccccHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHhh-CCEEEEEEecC-----Ccc
Confidence 567888999999999998764333345677888887632233334344456666666554 788854 4432 265
Q ss_pred ccccchhHH---HHHHHHHhc--CCCcEEecCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 411 VIGRNGTAV---YRVAEYASR--RGVPVIADGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 411 ~~g~~~~~l---~~~~~~~~~--~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
|......++ .++++.... .++.|-.||||+. ..+.+...+|||.+++|+.+
T Consensus 155 GQ~f~~~~~~kI~~~~~~~~~~~~~~~I~vDGGIn~-~~i~~l~~~Gad~~V~GS~i 210 (230)
T d1rpxa_ 155 GQSFIESQVKKISDLRKICAERGLNPWIEVDGGVGP-KNAYKVIEAGANALVAGSAV 210 (230)
T ss_dssp SCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESSCCT-TTHHHHHHHTCCEEEESHHH
T ss_pred cchhhhhhHHHHHHHHHHHHhcCCceEEEEECCcCH-HHHHHHHHcCCCEEEEChHH
Confidence 655544444 344444432 3578889999954 46888889999999999877
|
| >d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.35 E-value=0.013 Score=54.60 Aligned_cols=112 Identities=11% Similarity=0.017 Sum_probs=86.2
Q ss_pred HHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEecccc-CcHHHHHHHHCCCCEEEEcccccccCCCccc
Q psy1056 333 NRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVL-FGYQPRATLLNFIYQIEMIKFIKKEYPDMQV 411 (590)
Q Consensus 333 e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~-s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~ 411 (590)
+.+ ...+.|+.++.|.+.+-+..|-++.+..+++.. ++|++.|+.. ++.+..++..+|||+|-+- ....
T Consensus 67 ~~a-~~~~~gA~aiSVLTd~~~F~Gs~~dl~~v~~~~-~~PiLrKDFIid~~QI~ea~~~GADaiLLI-~~~L------- 136 (247)
T d1a53a_ 67 EYS-KFMERYAVGLSILTEEKYFNGSYETLRKIASSV-SIPILMKDFIVKESQIDDAYNLGADTVLLI-VKIL------- 136 (247)
T ss_dssp HHH-HHHTTTCSEEEEECCCTTTCCCHHHHHHHHHHC-CSCEEEESCCCSHHHHHHHHHHTCSEEEEE-GGGS-------
T ss_pred HHH-HHHHhCCCeEEEecCccccccchHHHHHHHhcc-ccceeecccccChHHHHHHHHhhcchhhhh-hhhc-------
Confidence 444 356789999998776544555678888888887 7999998776 9999999999999999431 1111
Q ss_pred cccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEEC
Q psy1056 412 IGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMG 459 (590)
Q Consensus 412 ~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g 459 (590)
....+.++.+.+...++.++. =++|..|+.+|+.+||+.+++=
T Consensus 137 ---~~~~l~~l~~~a~~lgl~~Lv--Evh~~~El~~a~~~~a~iIGIN 179 (247)
T d1a53a_ 137 ---TERELESLLEYARSYGMEPLI--EINDENDLDIALRIGARFIGIN 179 (247)
T ss_dssp ---CHHHHHHHHHHHHTTTCCCEE--EECSHHHHHHHHHTTCSEEEEE
T ss_pred ---cHHHHHHHHHHHHHHhhhHHh--hcCCHHHHHHHHhCCCCeEeee
Confidence 233466777777788887777 5889999999999999999665
|
| >d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Pseudomonas putida [TaxId: 303]
Probab=96.35 E-value=0.0041 Score=56.97 Aligned_cols=168 Identities=12% Similarity=0.109 Sum_probs=104.6
Q ss_pred eeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCCCCCCcccCCceEEeEeeccchhHHHHHHHHH
Q psy1056 260 IISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLS 339 (590)
Q Consensus 260 ~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li 339 (590)
++.....+...+..+.+.+.+++.+=|.-..-. ..+.++. .++..+++.+++.-= ...+.++..+
T Consensus 22 vl~~~~~~~a~~~~~al~~~Gi~~iEitl~~p~------a~~~i~~------l~~~~p~~~vGaGTV---~~~~~~~~a~ 86 (216)
T d1mxsa_ 22 VITIAREEDILPLADALAAGGIRTLEVTLRSQH------GLKAIQV------LREQRPELCVGAGTV---LDRSMFAAVE 86 (216)
T ss_dssp EECCSCGGGHHHHHHHHHHTTCCEEEEESSSTH------HHHHHHH------HHHHCTTSEEEEECC---CSHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHCCCCEEEEeCCChh------HHHHHHH------HHHhCCCcceeeeee---ecHHHHHHHH
Confidence 344455566777788888898887766532110 0012221 122334555554321 1246678889
Q ss_pred HcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHH
Q psy1056 340 QAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAV 419 (590)
Q Consensus 340 ~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l 419 (590)
++|+++++ +.+.. .+.++..++. ++|++- ++.|+.++..+.++|++.+++-+..... | +.-+
T Consensus 87 ~aGa~Fiv---sP~~~---~~v~~~a~~~--~i~~iP-Gv~TpsEi~~A~~~G~~~vKlFPA~~~~-------g--~~~i 148 (216)
T d1mxsa_ 87 AAGAQFVV---TPGIT---EDILEAGVDS--EIPLLP-GISTPSEIMMGYALGYRRFKLFPAEISG-------G--VAAI 148 (216)
T ss_dssp HHTCSSEE---CSSCC---HHHHHHHHHC--SSCEEC-EECSHHHHHHHHTTTCCEEEETTHHHHT-------H--HHHH
T ss_pred hCCCCEEE---CCCCc---HHHHHHHHhc--CCCccC-CcCCHHHHHHHHHCCCCEEEeccccccc-------c--HHHH
Confidence 99999986 33333 4555555555 677765 7889999999999999999873221100 1 1112
Q ss_pred HHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 420 YRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 420 ~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
..+..-. .++++|+.|||. ..++..=|++|+-+++.|+.+.
T Consensus 149 kal~~p~--p~~~fiptGGV~-~~n~~~yl~~~~v~avggs~l~ 189 (216)
T d1mxsa_ 149 KAFGGPF--GDIRFCPTGGVN-PANVRNYMALPNVMCVGTTWML 189 (216)
T ss_dssp HHHHTTT--TTCEEEEBSSCC-TTTHHHHHHSTTBCCEEECTTS
T ss_pred HHHhccc--ccCceeccCCCC-HHHHHHHHhcCCeEEEEccccC
Confidence 2222221 259999999994 6788888999998888888774
|
| >d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=96.25 E-value=0.016 Score=53.27 Aligned_cols=133 Identities=12% Similarity=0.042 Sum_probs=81.8
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCch----hhHHHHHHHHHHhCCCceEEecc-cc-CcHHHHHHHHCCCCEEEEcccc
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQGNS----IYQIEMIKFIKKEYPDMQVIGGN-VL-FGYQPRATLLNFIYQIEMIKFI 402 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G~~----~~~l~~i~~i~~~~~~vpvi~g~-v~-s~~~a~~l~~~Gvd~i~v~~~~ 402 (590)
..+.+.++.+.+.|++.+|+|...|+. ..-.+.++.++..+ +.|+-+.= +. -.+-...+.++|++.|.+-.+.
T Consensus 14 ~~l~~ei~~l~~~~~d~iHiDimDg~Fvpn~t~~~~~i~~i~~~~-~~~~dvHLMv~~p~~~i~~~~~~g~~~I~~H~E~ 92 (220)
T d1h1ya_ 14 ANLAAEADRMVRLGADWLHMDIMDGHFVPNLTIGAPVIQSLRKHT-KAYLDCHLMVTNPSDYVEPLAKAGASGFTFHIEV 92 (220)
T ss_dssp GGHHHHHHHHHHTTCSEEEEEEEBSSSSSCBCBCHHHHHHHHTTC-CSEEEEEEESSCGGGGHHHHHHHTCSEEEEEGGG
T ss_pred HHHHHHHHHHHHcCCCEEEEeeecCccccccccCchhhhhhhhhc-chhhhhHHHhcchhhhhHHhhhcccceeeecccc
Confidence 356678888899999999999766543 11267788887765 44433211 11 2234566777888877761110
Q ss_pred ccc-----------C---------------------------C---------CccccccchhHHHHHHHHHh-cCCCcEE
Q psy1056 403 KKE-----------Y---------------------------P---------DMQVIGRNGTAVYRVAEYAS-RRGVPVI 434 (590)
Q Consensus 403 ~~~-----------~---------------------------~---------~~~~~g~~~~~l~~~~~~~~-~~~v~ii 434 (590)
... . + |+.|-.....++..+++..+ ..+++|.
T Consensus 93 ~~~~~~~~i~~i~~~g~~~Glal~p~t~~~~~~~~l~~~~~~d~vlim~v~PG~~GQ~f~~~~l~kI~~l~~~~~~~~I~ 172 (220)
T d1h1ya_ 93 SRDNWQELIQSIKAKGMRPGVSLRPGTPVEEVFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIE 172 (220)
T ss_dssp CTTTHHHHHHHHHHTTCEEEEEECTTSCGGGGHHHHHSSSCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCTTSEEE
T ss_pred cchhHHHHHHHHHHcCCCcceeeccccchhHHHHHHhcccccceEEEEecCCCCcccccchhhhHHHHHHHhcCCCceEE
Confidence 000 0 0 12222223444555554432 2358899
Q ss_pred ecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 435 ADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 435 a~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
+||||+. .-+.+...+|||.+++|+.+-
T Consensus 173 VDGGIn~-~~i~~l~~aGad~~V~GS~if 200 (220)
T d1h1ya_ 173 VDGGLGP-STIDVAASAGANCIVAGSSIF 200 (220)
T ss_dssp EESSCST-TTHHHHHHHTCCEEEESHHHH
T ss_pred EEecCCH-HHHHHHHHCCCCEEEECHHHH
Confidence 9999965 478888899999999998874
|
| >d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Tritrichomonas foetus [TaxId: 5724]
Probab=96.16 E-value=0.0031 Score=62.81 Aligned_cols=71 Identities=35% Similarity=0.528 Sum_probs=63.2
Q ss_pred chHHHHHHHHHcCCcEEEEcCCCCchHHHHHHHHHhhhcC-CCcccccccccchHHHHHHHHHhcccccccc
Q psy1056 137 ADKYRLKLLSQAGVDVVILDSSQGNSIYQIEMIKYIKKEY-PDMQVIGGNVVTTDQAKNLIDAGVDGLRVGS 207 (590)
Q Consensus 137 d~~~~~~~l~~~~~dvv~~~~~~~~~~~~~~~v~~vk~~~-~~~~im~~~~~~~~~~~~a~~~m~~~~~v~~ 207 (590)
++.+++..++++++|++++|.+|++...+.+.++.++..+ +...+|.+|+.|.+..+++++..+|++|||+
T Consensus 110 ~~~~~~~~L~~ag~d~i~IDvAhG~~~~v~~~i~~ir~~~~~~~~IiAGNVaT~e~~~~L~~aGaD~vkVGI 181 (362)
T d1pvna1 110 DFRERVPALVEAGADVLCIDSSDGFSEWQKITIGWIREKYGDKVKVGAGNIVDGEGFRYLADAGADFIKIGI 181 (362)
T ss_dssp SHHHHHHHHHHHTCSEEEECCSCCCBHHHHHHHHHHHHHHGGGSCEEEEEECSHHHHHHHHHHTCSEEEECS
T ss_pred hhHHHHHHHhhcCceEEeechhccchhHHHHHHHHHHHhhccceeeecccccCHHHHHHHHHhCCcEEEecc
Confidence 5678889999999999999999999999999999986545 4466899999998889999999999999996
|
| >d1q45a_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 12-oxophytodienoate reductase (OPR, OYE homolog) species: Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]
Probab=95.92 E-value=0.017 Score=57.73 Aligned_cols=135 Identities=10% Similarity=0.010 Sum_probs=75.5
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCC--------------------ch----hhHHHHHHHHHHhCCCceEEe-ccc-----
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQG--------------------NS----IYQIEMIKFIKKEYPDMQVIG-GNV----- 379 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G--------------------~~----~~~l~~i~~i~~~~~~vpvi~-g~v----- 379 (590)
...+.+..+.++|.|.|.|+.+|| .. ++.++.++.+|+..++-++++ .-.
T Consensus 160 ~f~~aA~~A~~aGfDgVEIh~ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~lEii~aIr~~vg~~~~~~~~~~~~d~~ 239 (380)
T d1q45a_ 160 DYCLSALNAIRAGFDGIEIHGAHGYLIDQFLKDGINDRTDQYGGSIANRCRFLKQVVEGVVSAIGASKVGVRVSPAIDHL 239 (380)
T ss_dssp HHHHHHHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCGG
T ss_pred HHHHHHHHHHHhCcceeeeccchhhhHhhhhccccccCccccCccccchhhhHHHHHHHHHHHccccCceEEEeeccccc
Confidence 344567788899999999997552 11 345788999998875333332 110
Q ss_pred ---cCc--HH----H------HHHHHCCCCEEEEcccccccC-CCccccccchhHHHHHHHHH-hcCCCcEEecCCCCCH
Q psy1056 380 ---LFG--YQ----P------RATLLNFIYQIEMIKFIKKEY-PDMQVIGRNGTAVYRVAEYA-SRRGVPVIADGGVQSV 442 (590)
Q Consensus 380 ---~s~--~~----a------~~l~~~Gvd~i~v~~~~~~~~-~~~~~~g~~~~~l~~~~~~~-~~~~v~iia~GGi~~~ 442 (590)
.+. +. + ..+...+++++.++....... ....+...+......+.+.. ...++||++.||+ ++
T Consensus 240 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv~~~Gg~-~~ 318 (380)
T d1q45a_ 240 DATDSDPLSLGLAVVGMLNKLQGVNGSKLAYLHVTQPRYHAYGQTESGRQGSDEEEAKLMKSLRMAYNGTFMSSGGF-NK 318 (380)
T ss_dssp GCCCSCHHHHHHHHHHHHHHHHHTTSSCCSEEEEECCC---------------CHHHHHHHHHHHHSCSCEEEESSC-CH
T ss_pred ccccccchhhhhhhhhhhhHhhhhccccceeEEeccCcccccccccccccCchhhhHHHHHHHhhccCCcEEeCCCC-CH
Confidence 011 11 1 111226788886632111110 00001100111112222211 2246899999998 79
Q ss_pred HHHHHHHHcC-CCEEEECccccCC
Q psy1056 443 GHVMKALALG-ASTAMMGSLLAGT 465 (590)
Q Consensus 443 ~di~kalalG-A~~v~~g~~l~~~ 465 (590)
.++.++|+-| ||+|.|||+|..-
T Consensus 319 ~~ae~~l~~G~~DlV~~gR~liaD 342 (380)
T d1q45a_ 319 ELGMQAVQQGDADLVSYGRLFIAN 342 (380)
T ss_dssp HHHHHHHHTTSCSEEEESHHHHHC
T ss_pred HHHHHHHHcCCccchhhhHHHHHC
Confidence 9999999998 9999999988643
|
| >d1icpa_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 12-oxophytodienoate reductase (OPR, OYE homolog) species: Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]
Probab=95.86 E-value=0.013 Score=58.21 Aligned_cols=128 Identities=13% Similarity=0.048 Sum_probs=76.7
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCc-----------------------h-hhHHHHHHHHHHhCCCceEEec--------
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGN-----------------------S-IYQIEMIKFIKKEYPDMQVIGG-------- 377 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~-----------------------~-~~~l~~i~~i~~~~~~vpvi~g-------- 377 (590)
...+.+....++|.|.|.|+.+||+ + ++.++.++.+|+..++-++++.
T Consensus 159 ~f~~aA~rA~~AGfDgVeIH~ahGyLl~QFlSp~tN~RtDeYGGsleNR~Rf~~Eii~aIr~~~g~~~i~~r~s~~~~~~ 238 (364)
T d1icpa_ 159 EFRVAARNAIEAGFDGVEIHGAHGYLIDQFMKDQVNDRSDKYGGSLENRCRFALEIVEAVANEIGSDRVGIRISPFAHYN 238 (364)
T ss_dssp HHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCTT
T ss_pred HHHHHHHHHHHhCCCeEEEeccCcchhhceehhhcCCcCccccchhhhhhhHHHHHhhhhhcccCCcceeEEeccccccc
Confidence 3445677888999999999976531 1 3457899999998864444422
Q ss_pred -cccCcHHH------HHHHHCCCCEEEEcccccccCCCcccccc-chhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHH
Q psy1056 378 -NVLFGYQP------RATLLNFIYQIEMIKFIKKEYPDMQVIGR-NGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKAL 449 (590)
Q Consensus 378 -~v~s~~~a------~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kal 449 (590)
...+.+++ +.+..++++++.++- .... ...+.. .......+++ ..+.|+|+.||+ ++.++.++|
T Consensus 239 ~~g~~~~~~~~l~~~~~~~~~d~~~~~~~~-~~~~---~~~~~~~~~~~~~~i~~---~~~~~vi~~g~~-~~~~ae~~l 310 (364)
T d1icpa_ 239 EAGDTNPTALGLYMVESLNKYDLAYCHVVE-PRMK---TAWEKIECTESLVPMRK---AYKGTFIVAGGY-DREDGNRAL 310 (364)
T ss_dssp TCCCSCHHHHHHHHHHHHGGGCCSEEEEEC-CSCC---C------CCCCSHHHHH---HCCSCEEEESSC-CHHHHHHHH
T ss_pred CCcCcchHHHHHHHHHHhhccceeeeeeec-Cccc---ccccccccHHHHHHHHH---hcCCCEEEECCC-CHHHHHHHH
Confidence 11133333 233345566664421 1111 111111 2222233333 345899998886 889999999
Q ss_pred HcC-CCEEEECccccCC
Q psy1056 450 ALG-ASTAMMGSLLAGT 465 (590)
Q Consensus 450 alG-A~~v~~g~~l~~~ 465 (590)
+-| ||+|++|++|..-
T Consensus 311 ~~g~aD~V~~gR~~iad 327 (364)
T d1icpa_ 311 IEDRADLVAYGRLFISN 327 (364)
T ss_dssp HTTSCSEEEESHHHHHC
T ss_pred HcCCCceehhHHHHHHC
Confidence 986 9999999988644
|
| >d1p1xa_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Escherichia coli [TaxId: 562]
Probab=95.82 E-value=0.014 Score=54.66 Aligned_cols=118 Identities=15% Similarity=0.075 Sum_probs=72.0
Q ss_pred HHHHHHHHHcCCcEEEEecC-----CCchhhHHHHHHHHHHh---CC-CceEEec--cccCcHH---H-HHHHHCCCCEE
Q psy1056 332 KNRLKLLSQAGVDVVILDSS-----QGNSIYQIEMIKFIKKE---YP-DMQVIGG--NVLFGYQ---P-RATLLNFIYQI 396 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~-----~G~~~~~l~~i~~i~~~---~~-~vpvi~g--~v~s~~~---a-~~l~~~Gvd~i 396 (590)
...++..++.|++-+-+... +|+...+.+.++.+++. .+ .+.+|+- ...+.+- | +.+.++|+|+|
T Consensus 87 ~~E~~~Ai~~GAdEID~Vin~~~l~~g~~~~v~~ei~~v~~~~~~~~~~lKVIlEt~~Ltd~e~i~~a~~ia~~aGadFv 166 (250)
T d1p1xa_ 87 LAETRAAIAYGADEVDVVFPYRALMAGNEQVGFDLVKACKEACAAANVLLKVIIETGELKDEALIRKASEISIKAGADFI 166 (250)
T ss_dssp HHHHHHHHHHTCSEEEEECCHHHHHTTCCHHHHHHHHHHHHHHHHTTCEEEEECCHHHHCSHHHHHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHHcCCCeEEEeecchhhccccHHHHHHHHHHHHHhhccCCceEEEEEeccccCcHHHHHHHHHHHHHcCcCeE
Confidence 34677788899997755432 35555555666665543 21 2445542 2223332 2 34578999999
Q ss_pred EEcccccccCCCccccccchhHHHHHHHHHhc----CCCcEEecCCCCCHHHHHHHHHcCCCEE
Q psy1056 397 EMIKFIKKEYPDMQVIGRNGTAVYRVAEYASR----RGVPVIADGGVQSVGHVMKALALGASTA 456 (590)
Q Consensus 397 ~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~----~~v~iia~GGi~~~~di~kalalGA~~v 456 (590)
+-| |+ +...|.++..+....+.... .++.|=++|||||..|+.+-+.+||+..
T Consensus 167 KTS--TG-----~~~~gat~~~v~~m~~~i~~~~~~~~vgIKasGGIrt~~~a~~~i~~ga~~i 223 (250)
T d1p1xa_ 167 KTS--TG-----KVAVNATPESARIMMEVIRDMGVEKTVGFKPAGGVRTAEDAQKYLAIADELF 223 (250)
T ss_dssp ECC--CS-----CSSCCCCHHHHHHHHHHHHHHTCTTTCEEECBSSCCSHHHHHHHHHHHHHHH
T ss_pred Eec--CC-----cCCCCCCHHHHHHHHHHhhhhccCcceeeEecCCCCCHHHHHHHHHHHHHHh
Confidence 322 11 22223355555555444432 3588999999999999999999999755
|
| >d1qapa1 c.1.17.1 (A:130-296) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=95.77 E-value=0.026 Score=49.28 Aligned_cols=89 Identities=13% Similarity=0.004 Sum_probs=63.9
Q ss_pred HHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecC
Q psy1056 358 QIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADG 437 (590)
Q Consensus 358 ~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~G 437 (590)
+.+.+..+++..|..++.+ +|.+.++++.++++|+|.|-+. .+ +++.+.++.+... ..+.+-+||
T Consensus 66 ~~~~~~~~~~~~~~~~IeV-Ev~~~~~~~~a~~~g~diImLD-----------N~--~pe~~~~av~~i~-~~~~lEaSG 130 (167)
T d1qapa1 66 VRQAVEKAFWLHPDVPVEV-EVENLDELDDALKAGADIIMLD-----------NF--NTDQMREAVKRVN-GQARLEVSG 130 (167)
T ss_dssp HHHHHHHHHHHSTTSCEEE-EESSHHHHHHHHHTTCSEEEES-----------SC--CHHHHHHHHHTTC-TTCCEEECC
T ss_pred hhhhhHHHhhcCCCceEEE-ecCcHHHHHHHHhcCCcEEEec-----------CC--CHHHHHHHHHhcC-CceEEEEeC
Confidence 3466777777777777665 9999999999999999998221 11 2333333333322 247888999
Q ss_pred CCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 438 GVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 438 Gi~~~~di~kalalGA~~v~~g~~l 462 (590)
|| |...+.+=-..|+|.+.+|.+.
T Consensus 131 gI-~~~ni~~ya~~GVD~IS~galt 154 (167)
T d1qapa1 131 NV-TAETLREFAETGVDFISVGALT 154 (167)
T ss_dssp CS-CHHHHHHHHHTTCSEEECSHHH
T ss_pred CC-CHHHHHHHHHcCCCEEECCccc
Confidence 99 7888887777999999998764
|
| >d2g50a2 c.1.12.1 (A:12-115,A:218-395) Pyruvate kinase, N-terminal domain {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Pyruvate kinase domain: Pyruvate kinase, N-terminal domain species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=95.55 E-value=0.018 Score=54.93 Aligned_cols=125 Identities=16% Similarity=0.224 Sum_probs=87.7
Q ss_pred EEeEeeccchhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHH---HhCCC-------ceEEec---ccc---CcH
Q psy1056 320 IVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIK---KEYPD-------MQVIGG---NVL---FGY 383 (590)
Q Consensus 320 ~v~a~i~~~~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~---~~~~~-------vpvi~g---~v~---s~~ 383 (590)
.+.+.+|+.....+.+..|+++|++++-++.+||..+...+.++.+| +.+.. +-+... ... +.+
T Consensus 34 KIIaTiGPas~~~e~l~~Li~aGvnv~RiN~SHg~~e~h~~~i~~iR~~~~~~~~~~il~~~~~I~~d~~~~~l~~~di~ 113 (282)
T d2g50a2 34 GIICTIGPASRSVETLKEMIKSGMNVARMNFSHGTHEYHAETIKNVRTATESFASDPILYRPVAVALDTKGPAVSEKDIQ 113 (282)
T ss_dssp EEEEECSTTTCSHHHHHHHHHHTCCEEEEETTSSCHHHHHHHHHHHHHHHHTTTTCTTTCCCCEEEEECCCCSSCHHHHH
T ss_pred cEEEEeCCCCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCCceeccccccccccccccccchHHH
Confidence 46788999888899999999999999999999998866655555555 44422 222211 111 456
Q ss_pred HHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcC--CCcEEe----cCCCCCHHHHHHHHHcCCCEEE
Q psy1056 384 QPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRR--GVPVIA----DGGVQSVGHVMKALALGASTAM 457 (590)
Q Consensus 384 ~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~--~v~iia----~GGi~~~~di~kalalGA~~v~ 457 (590)
+...+.+.|+|+|-+|... +...+.++++..... +++||+ ..|+.+-.++.++ +|++|
T Consensus 114 di~~a~~~~vD~ialSFVr------------s~~DI~~~r~~l~~~g~~~~IiaKIE~~~al~NldeIi~~----sDgIM 177 (282)
T d2g50a2 114 DLKFGVEQDVDMVFASFIR------------KAADVHEVRKILGEKGKNIKIISKIENHEGVRRFDEILEA----SDGIM 177 (282)
T ss_dssp HHHHHHHTTCSEEEETTCC------------SHHHHHHHHHHHTTTTTTSEEEEEECSHHHHHTHHHHHHH----SSEEE
T ss_pred HHHHhhhccccceeecccC------------CHHHHHHHHHHHHHcCCCceEEEeecchhhhhcchhhccc----cceee
Confidence 6777888999999555332 334566777777543 478888 4577777777776 79999
Q ss_pred ECc
Q psy1056 458 MGS 460 (590)
Q Consensus 458 ~g~ 460 (590)
+.+
T Consensus 178 IaR 180 (282)
T d2g50a2 178 VAR 180 (282)
T ss_dssp EEH
T ss_pred eec
Confidence 875
|
| >d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Plasmodium falciparum [TaxId: 5833]
Probab=95.45 E-value=0.022 Score=52.35 Aligned_cols=123 Identities=12% Similarity=0.050 Sum_probs=77.2
Q ss_pred HHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHH-CCCCEEEE-cccccccCCCcccc
Q psy1056 335 LKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLL-NFIYQIEM-IKFIKKEYPDMQVI 412 (590)
Q Consensus 335 ~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~-~Gvd~i~v-~~~~~~~~~~~~~~ 412 (590)
++.+.++|++.++++....+.......++.+++.....-+....-...+.....+. ..+|++-+ ++..+ +.|.
T Consensus 77 i~~~~~~~~~~i~~~~~~~~~~~~~~~i~~i~~~g~~~Gial~p~t~~~~~~~~l~~~~~d~vlim~V~pG-----~~GQ 151 (221)
T d1tqxa_ 77 VPLLKTSNQLTFHFEALNEDTERCIQLAKEIRDNNLWCGISIKPKTDVQKLVPILDTNLINTVLVMTVEPG-----FGGQ 151 (221)
T ss_dssp GGGCTTSSEEEEEGGGGTTCHHHHHHHHHHHHTTTCEEEEEECTTSCGGGGHHHHTTTCCSEEEEESSCTT-----CSSC
T ss_pred hhhhhhcCceeEEeehhccccchhhHHHHHHHhcCCeEEEeeccccccccchhhcccccccEEEEEeeccc-----cccc
Confidence 34556778887777654444445566777777763223333434445666777765 45888854 44333 4444
Q ss_pred ccchhHHHHHHHHHhc-CCCcEEecCCCCCHHHHHHHHHcCCCEEEECcccc
Q psy1056 413 GRNGTAVYRVAEYASR-RGVPVIADGGVQSVGHVMKALALGASTAMMGSLLA 463 (590)
Q Consensus 413 g~~~~~l~~~~~~~~~-~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~ 463 (590)
.....++..+++..+. .++.|-.|||| |...+.+...+|||.+++|+.+-
T Consensus 152 ~f~~~~l~KI~~lr~~~~~~~I~VDGGI-n~~~i~~l~~aGad~iV~GS~if 202 (221)
T d1tqxa_ 152 SFMHDMMGKVSFLRKKYKNLNIQVDGGL-NIETTEISASHGANIIVAGTSIF 202 (221)
T ss_dssp CCCGGGHHHHHHHHHHCTTCEEEEESSC-CHHHHHHHHHHTCCEEEESHHHH
T ss_pred ccCcchhHHHHHHHHhcCCcceEEEccc-CHHhHHHHHHcCCCEEEEChHHH
Confidence 4444444444433322 24889999999 55678899999999999998773
|
| >d1tqja_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=95.42 E-value=0.024 Score=52.14 Aligned_cols=123 Identities=12% Similarity=0.031 Sum_probs=75.0
Q ss_pred HHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEE-cccccccCCCccc
Q psy1056 333 NRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEM-IKFIKKEYPDMQV 411 (590)
Q Consensus 333 e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v-~~~~~~~~~~~~~ 411 (590)
..++.+.++|++.+.++........+...+.++++.--.+-+...--...+....+++. +|.+-+ ++..+ +.|
T Consensus 74 ~~i~~~~~~g~~~i~~H~E~~~~~~~~~~~~~i~~~g~~~Gial~p~T~~~~l~~~l~~-~d~vlvM~V~pG-----~~G 147 (221)
T d1tqja_ 74 KYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPSTPLDFLEYVLPV-CDLILIMSVNPG-----FGG 147 (221)
T ss_dssp GTHHHHHHHTCSEEEEECSTTTCTTHHHHHHHHHHTTCEEEEEECTTCCGGGGTTTGGG-CSEEEEESSCC---------
T ss_pred HHHHHHhhccceEEEEeeccccChhhHHHHHHHHHCCCCEEEEecCCCcHHHHHHHHhh-hcEEEEEEecCC-----CCC
Confidence 45778889999999998753333345677777777621122223333345555555553 677754 44332 555
Q ss_pred cccchhH---HHHHHHHHhc--CCCcEEecCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 412 IGRNGTA---VYRVAEYASR--RGVPVIADGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 412 ~g~~~~~---l~~~~~~~~~--~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
......+ +.++++.... .++.|-.||||.. ..+.+...+|||.+++|+.+
T Consensus 148 Q~f~~~~~~ki~~l~~~~~~~~~~~~I~VDGGIn~-~~i~~l~~~Gad~~V~GS~i 202 (221)
T d1tqja_ 148 QSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKP-NNTWQVLEAGANAIVAGSAV 202 (221)
T ss_dssp CCCCGGGHHHHHHHHHHHHHHTCCCEEEEESSCCT-TTTHHHHHHTCCEEEESHHH
T ss_pred cccchhhHHHHHHHHhhhhccccceEEEEECCcCH-HHHHHHHHcCCCEEEEChHH
Confidence 4443333 4444444433 3578899999963 35777778899999999877
|
| >d1viza_ c.1.4.1 (A:) PcrB protein homolog YerE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: PcrB protein homolog YerE species: Bacillus subtilis [TaxId: 1423]
Probab=95.41 E-value=0.034 Score=51.30 Aligned_cols=32 Identities=16% Similarity=0.291 Sum_probs=28.9
Q ss_pred CCcEEecCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 430 GVPVIADGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 430 ~v~iia~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
++|++..+||+++.++.+ ++.|||+|++|+++
T Consensus 181 ~~Pl~VGFGIst~e~a~~-v~~~ADgVVVGSAi 212 (229)
T d1viza_ 181 TSTLFYGGGIKDAETAKQ-YAEHADVIVVGNAV 212 (229)
T ss_dssp SSEEEEESSCCSHHHHHH-HHTTCSEEEECTHH
T ss_pred CcceEEEcccCCHHHHHH-HHcCCCEEEECHHH
Confidence 589999999999999855 56899999999988
|
| >d1vpxa_ c.1.10.1 (A:) Decameric fructose-6-phosphate aldolase/transaldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Decameric fructose-6-phosphate aldolase/transaldolase species: Thermotoga maritima [TaxId: 2336]
Probab=95.35 E-value=0.05 Score=49.70 Aligned_cols=121 Identities=16% Similarity=0.108 Sum_probs=83.9
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCc
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDM 409 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~ 409 (590)
...+.+..+...+-+++ |-.+- ...+ +..++.+++. ++++-+=-|-|.++|..+.++|+++| ++..+| .
T Consensus 67 ~m~~~a~~l~~~~~ni~-VKIP~-t~~G-~~ai~~L~~~--Gi~~n~Tavfs~~Qa~~Aa~aga~yi--spy~gR----~ 135 (218)
T d1vpxa_ 67 GMVREARELAQISEYVV-IKIPM-TPDG-IKAVKTLSAE--GIKTNVTLVFSPAQAILAAKAGATYV--SPFVGR----M 135 (218)
T ss_dssp HHHHHHHHHHTTCTTEE-EEEES-SHHH-HHHHHHHHHT--TCCEEEEEECSHHHHHHHHHHTCSEE--EEBHHH----H
T ss_pred HHHHHHHHHhccccceE-EEecc-cccc-hHHHHHHHHc--CCceeeEEecCHHHHHHHHhcCCCEE--Eeeecc----h
Confidence 33445555555554433 32221 1222 5678888887 78888777889999999999999988 333333 3
Q ss_pred ccccc-chhHHHHHHHHHhcC--CCcEEecCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 410 QVIGR-NGTAVYRVAEYASRR--GVPVIADGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 410 ~~~g~-~~~~l~~~~~~~~~~--~v~iia~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
.++|. ....+.++.+..... +..|++ +.+|+..++..|+..|||.+-+...+
T Consensus 136 ~d~g~d~~~~i~~~~~~~~~~~~~tkil~-AS~r~~~~v~~a~~~G~d~iTip~~v 190 (218)
T d1vpxa_ 136 DDLSNDGMRMLGEIVEIYNNYGFETEIIA-ASIRHPMHVVEAALMGVDIVTMPFAV 190 (218)
T ss_dssp HHTTSCHHHHHHHHHHHHHHHTCSCEEEE-BSCCSHHHHHHHHHHTCSEEEECHHH
T ss_pred hhhcccchhhHHHHHHHHhhhcccceeee-eccCCHHHHHHHHHcCCCEEEcCHHH
Confidence 45666 555666666665443 466666 68999999999999999999888766
|
| >d1pkla2 c.1.12.1 (A:1-87,A:187-357) Pyruvate kinase, N-terminal domain {Leishmania mexicana [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Pyruvate kinase domain: Pyruvate kinase, N-terminal domain species: Leishmania mexicana [TaxId: 5665]
Probab=95.29 E-value=0.035 Score=51.94 Aligned_cols=132 Identities=17% Similarity=0.160 Sum_probs=90.1
Q ss_pred eEEeEeeccchhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHH---hC-CCceEEecccc-------CcHHHHH
Q psy1056 319 LIVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKK---EY-PDMQVIGGNVL-------FGYQPRA 387 (590)
Q Consensus 319 l~v~a~i~~~~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~---~~-~~vpvi~g~v~-------s~~~a~~ 387 (590)
-.+.+.+|+.....+.+..|+++|++++-++.+||..+...+.++.+|+ +. ..+.++....+ +.++...
T Consensus 21 TKIIaTiGPas~~~~~l~~li~aGvdv~RiN~SHg~~e~~~~~i~~iR~~~~~~g~~v~i~~d~~gp~~~t~kd~~di~~ 100 (258)
T d1pkla2 21 ARIICTIGPSTQSVEALKGLIQSGMSVARMNFSHGSHEYHQTTINNVRQAAAELGVNIAIALDTKGPPAVSAKDRVDLQF 100 (258)
T ss_dssp SEEEEECCGGGCSHHHHHHHHHHTEEEEEEETTSSCHHHHHHHHHHHHHHHHHTTCCCEEEEECCCCCSSCHHHHHHHHH
T ss_pred CcEEEeeCCCcCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHHhCCCccccccccccccccccHHHHHHH
Confidence 3467889998888899999999999999999999988776555555554 44 23455543332 4566777
Q ss_pred HHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcC--CCcEEe----cCCCCCHHHHHHHHHcCCCEEEECcc
Q psy1056 388 TLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRR--GVPVIA----DGGVQSVGHVMKALALGASTAMMGSL 461 (590)
Q Consensus 388 l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~--~v~iia----~GGi~~~~di~kalalGA~~v~~g~~ 461 (590)
+.+.|+|+|-+|... +..-+.++++.+... ++++|+ --|+.+=.+|.++ +|+||+.+-
T Consensus 101 a~~~~vD~ialSFVr------------s~~Dv~~ir~~l~~~~~~~~iiaKIE~~~al~nldeI~~~----sDgImIaRG 164 (258)
T d1pkla2 101 GVEQGVDMIFASFIR------------SAEQVGDVRKALGPKGRDIMIICKIENHQGVQNIDSIIEE----SDGIMVARG 164 (258)
T ss_dssp HHHHTCSEEEETTCC------------SHHHHHHHHHHHCGGGTTSEEEEEECSHHHHHTHHHHHHH----SSEEEECHH
T ss_pred HHhcCCCeEEEeCCC------------CHHHHHHHHHHHHHcCCCCceEEEecCchhhhhhhhHHhh----CCeeeEech
Confidence 888999999554322 233455666666433 467888 2255555566655 899999875
Q ss_pred ccCCC
Q psy1056 462 LAGTS 466 (590)
Q Consensus 462 l~~~~ 466 (590)
=++.+
T Consensus 165 DLg~e 169 (258)
T d1pkla2 165 DLGVE 169 (258)
T ss_dssp HHTTT
T ss_pred hhhhh
Confidence 55443
|
| >d1e0ta2 c.1.12.1 (A:1-69,A:168-344) Pyruvate kinase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Pyruvate kinase domain: Pyruvate kinase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.24 E-value=0.035 Score=51.59 Aligned_cols=124 Identities=15% Similarity=0.196 Sum_probs=84.6
Q ss_pred EeEeeccchhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHH---hC-CCceEEe---cccc---CcHHHHHHHH
Q psy1056 321 VGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKK---EY-PDMQVIG---GNVL---FGYQPRATLL 390 (590)
Q Consensus 321 v~a~i~~~~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~---~~-~~vpvi~---g~v~---s~~~a~~l~~ 390 (590)
+.+.+|+.....+.+..|+++|++++-++.+||......+.++.+|+ +. ..+.+.. |.-. +.++...+.+
T Consensus 6 IIaTiGPas~~~~~l~~li~aGvdv~RlN~SHg~~~~~~~~i~~ir~~~~~~~~~~~I~~Dl~gp~ltekD~~~i~~a~~ 85 (246)
T d1e0ta2 6 IVCTIGPKTESEEMLAKMLDAGMNVMRLNFSHGDYAEHGQRIQNLRNVMSKTGKTAAILLDTKGPALAEKDKQDLIFGCE 85 (246)
T ss_dssp EEEECCGGGCSHHHHHHHHHHTEEEEEEETTSSCHHHHHHHHHHHHHHHHHHTCCCEEEEECCCCSSCHHHHHHHHHHHH
T ss_pred EEEeeCCCcCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHcCCCCcccccccccccccCcchhhhHHHH
Confidence 56788988888899999999999999999999988776666666654 33 1334443 2222 4556667789
Q ss_pred CCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcC---CCcEEe----cCCCCCHHHHHHHHHcCCCEEEECc
Q psy1056 391 NFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRR---GVPVIA----DGGVQSVGHVMKALALGASTAMMGS 460 (590)
Q Consensus 391 ~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~---~v~iia----~GGi~~~~di~kalalGA~~v~~g~ 460 (590)
.|+|+|-+|... ...-+.++++.+... +++||+ --|+.+-.+|.++ +|++|++|
T Consensus 86 ~~vD~ialSFVr------------~~~Dv~~~r~~l~~~~~~~~~iiaKIE~~~al~nldeIi~~----sDgImIaR 146 (246)
T d1e0ta2 86 QGVDFVAASFIR------------KRSDVIEIREHLKAHGGENIHIISKIENQEGLNNFDEILEA----SDGIMVAR 146 (246)
T ss_dssp HTCSEEEESSCC------------SHHHHHHHHHHHHTTTCTTCEEEEEECSHHHHHTHHHHHHH----SSEEEEEH
T ss_pred cCCCEEEEcCCC------------CHHHHHHHHHHHHHhCCCCceEEEEecchhhhhchHHHHhh----cceEEEEc
Confidence 999999554322 333456677666543 367888 1245555556555 79999885
|
| >d1qpoa1 c.1.17.1 (A:117-285) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.22 E-value=0.023 Score=49.82 Aligned_cols=90 Identities=16% Similarity=0.086 Sum_probs=64.4
Q ss_pred HHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhc--CCCcEEe
Q psy1056 358 QIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASR--RGVPVIA 435 (590)
Q Consensus 358 ~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~--~~v~iia 435 (590)
+.+.++.+++..|..++.+ +|.+.++++++.++|+|.|-+. .. ++..+.++.+..+. ..+.+-+
T Consensus 66 i~~~i~~~k~~~~~~~I~V-Ev~s~~q~~~a~~~~~diImLD-----------N~--sp~~~k~~v~~~~~~~~~i~lEa 131 (169)
T d1qpoa1 66 VVDALRAVRNAAPDLPCEV-EVDSLEQLDAVLPEKPELILLD-----------NF--AVWQTQTAVQRRDSRAPTVMLES 131 (169)
T ss_dssp HHHHHHHHHHHCTTSCEEE-EESSHHHHHHHGGGCCSEEEEE-----------TC--CHHHHHHHHHHHHHHCTTCEEEE
T ss_pred hhhhhhhhhhhcCCCceEE-EeccHHHhhhhhhcCCcEEEec-----------Cc--ChHhHHHHHHHhhccCCeeEEEE
Confidence 4567888888887766666 9999999999999999998321 11 22223333322221 2477889
Q ss_pred cCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 436 DGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 436 ~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
|||| +...+..=...|+|.+.+|.+.
T Consensus 132 SGgI-~~~ni~~ya~~GvD~IS~galt 157 (169)
T d1qpoa1 132 SGGL-SLQTAATYAETGVDYLAVGALT 157 (169)
T ss_dssp ESSC-CTTTHHHHHHTTCSEEECGGGT
T ss_pred eCCC-CHHHHHHHHHcCCCEEECCccc
Confidence 9999 7777877777899999999765
|
| >d1a3xa2 c.1.12.1 (A:1-87,A:189-366) Pyruvate kinase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Pyruvate kinase domain: Pyruvate kinase, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.19 E-value=0.048 Score=51.15 Aligned_cols=132 Identities=20% Similarity=0.263 Sum_probs=92.1
Q ss_pred ceEEeEeeccchhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHH---HhCCCceEE--e---cccc---CcHHHH
Q psy1056 318 QLIVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIK---KEYPDMQVI--G---GNVL---FGYQPR 386 (590)
Q Consensus 318 ~l~v~a~i~~~~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~---~~~~~vpvi--~---g~v~---s~~~a~ 386 (590)
+-.+.+.+|+.....+.+..|+++|++++-++.+||......+.++.+| +..++.|+. . +... +.++.+
T Consensus 20 rTKIIaTiGPas~~~e~l~~li~aG~dv~RlN~SHg~~~~h~~~i~~iR~~~e~~~G~~v~i~~dl~~p~ltekD~~di~ 99 (265)
T d1a3xa2 20 RTSIIGTIGPKTNNPETLVALRKAGLNIVRMNFSHGSYEYHKSVIDNARKSEELYPGRPLAIALDTKGPALSEKDKEDLR 99 (265)
T ss_dssp CSEEEEECCTTTCSHHHHHHHHHHTEEEEEEETTSCCHHHHHHHHHHHHHHHHHCCCSCCBCEEECCCCSSCHHHHHHHH
T ss_pred CceEEEeeCCCCCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHhhhccCCceeeeccccchhcccchHHHHH
Confidence 3456788999888899999999999999999999998866655555555 444444432 1 1112 556677
Q ss_pred HHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhc--CCCcEEe----cCCCCCHHHHHHHHHcCCCEEEECc
Q psy1056 387 ATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASR--RGVPVIA----DGGVQSVGHVMKALALGASTAMMGS 460 (590)
Q Consensus 387 ~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~--~~v~iia----~GGi~~~~di~kalalGA~~v~~g~ 460 (590)
.+.+.|+|+|-+|... ++.-+..+++.+.. .+++||+ --|+.|-.+|.++ +|++|+.+
T Consensus 100 ~a~~~~vD~ialSFVr------------s~~Di~~~r~~l~~~~~~~~IiaKIE~~~al~NldeIi~~----sDgimIaR 163 (265)
T d1a3xa2 100 FGVKNGVHMVFASFIR------------TANDVLTIREVLGEQGKDVKIIVKIENQQGVNNFDEILKV----TDGVMVAR 163 (265)
T ss_dssp HHHHTTCCEECCTTCC------------SHHHHHHHHHHHCGGGTTSCCEEEECSHHHHTTHHHHHHH----CSEEEEEH
T ss_pred HhhhcccceEeeccCC------------CHHHHHHHHHHHHHhcCCCeEEeeccchHHHhChHHHHhh----cceeEEEc
Confidence 8899999999332211 44556677777643 2578888 3377777788777 89999987
Q ss_pred cccCC
Q psy1056 461 LLAGT 465 (590)
Q Consensus 461 ~l~~~ 465 (590)
--++.
T Consensus 164 GDLgv 168 (265)
T d1a3xa2 164 GDLGI 168 (265)
T ss_dssp HHHHH
T ss_pred cchhh
Confidence 55443
|
| >d1oyaa_ c.1.4.1 (A:) Old yellow enzyme (OYE) {Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Old yellow enzyme (OYE) species: Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]
Probab=94.80 E-value=0.023 Score=57.10 Aligned_cols=131 Identities=14% Similarity=0.032 Sum_probs=74.5
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCc-----------------------h-hhHHHHHHHHHHhCCCceEEecc-------
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGN-----------------------S-IYQIEMIKFIKKEYPDMQVIGGN------- 378 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~-----------------------~-~~~l~~i~~i~~~~~~vpvi~g~------- 378 (590)
...+.+....++|.|.|.|+.+||+ + ++.++.++.+|+..++-||.+.=
T Consensus 172 ~f~~AA~rA~~AGfDgVEIH~aHGYLl~qFLSp~tN~RtDeYGGSlENR~Rf~~Eii~aIR~~vg~~~IgvRls~~d~~~ 251 (399)
T d1oyaa_ 172 EYVQAAKNSIAAGADGVEIHSANGYLLNQFLDPHSNTRTDEYGGSIENRARFTLEVVDALVEAIGHEKVGLRLSPYGVFN 251 (399)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECTTCCTT
T ss_pred HHHHHHHHHHHhCCceEehhhhHHHHHHHhhcccccccccccCcchhhhhHHHHHHHHhhhheeeccCceEEechhhccc
Confidence 3445778888999999999986531 1 34578899999988655766431
Q ss_pred -ccC----------cHHHHHHHH---CC--CCEEEEcc-cccccCCCccc-cccchhHHHHHHHHHhcCCCcEEecCCCC
Q psy1056 379 -VLF----------GYQPRATLL---NF--IYQIEMIK-FIKKEYPDMQV-IGRNGTAVYRVAEYASRRGVPVIADGGVQ 440 (590)
Q Consensus 379 -v~s----------~~~a~~l~~---~G--vd~i~v~~-~~~~~~~~~~~-~g~~~~~l~~~~~~~~~~~v~iia~GGi~ 440 (590)
..+ .+.+..+.. +| .+++..+. ..... ..... ..+.......+++ ..++|||+.|||.
T Consensus 252 ~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ik~---~~~~PVi~~G~i~ 327 (399)
T d1oyaa_ 252 SMSGGAETGIVAQYAYVAGELEKRAKAGKRLAFVHLVEPRVTNP-FLTEGEGEYEGGSNDFVYS---IWKGPVIRAGNFA 327 (399)
T ss_dssp TCCGGGSTTHHHHHHHHHHHHHHHHHTTCCCSEEEEECTTCSCT-TSCTTSSCCCSCCTTHHHH---HCCSCEEEESSCT
T ss_pred ccCCccccchHHHHHHHHHHHHHhccccccccceeeecccCCCc-cccccccccchhHHHHHHH---HhCCCEEEECCCC
Confidence 001 111222322 22 23332210 00000 00001 1111111112332 2468999999999
Q ss_pred CHHHHHHHHHc-CCCEEEECccccC
Q psy1056 441 SVGHVMKALAL-GASTAMMGSLLAG 464 (590)
Q Consensus 441 ~~~di~kalal-GA~~v~~g~~l~~ 464 (590)
+..++++.+.. |||+|.||++|..
T Consensus 328 ~~~~~~~~i~~~~aDlV~~gR~lia 352 (399)
T d1oyaa_ 328 LHPEVVREEVKDKRTLIGYGRFFIS 352 (399)
T ss_dssp TCHHHHHHHTTSTTEEEECCHHHHH
T ss_pred ChHHHHHHHHcCCCeEhHHHHHHHH
Confidence 98888887766 5999999998853
|
| >d1wx0a1 c.1.10.1 (A:1-211) Decameric fructose-6-phosphate aldolase/transaldolase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Decameric fructose-6-phosphate aldolase/transaldolase species: Thermus thermophilus [TaxId: 274]
Probab=94.61 E-value=0.055 Score=49.19 Aligned_cols=95 Identities=21% Similarity=0.216 Sum_probs=72.0
Q ss_pred HHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCcccccc-chhHHHHHHHHHhcC--CCcEEe
Q psy1056 359 IEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGR-NGTAVYRVAEYASRR--GVPVIA 435 (590)
Q Consensus 359 l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~--~v~iia 435 (590)
+..++.+++. ++++-+=-|-|..+|..+.++|+++| ++..+| ..++|+ ....+.++.+..... +..|++
T Consensus 100 ~~a~~~L~~~--Gi~vn~T~vfs~~Qa~~Aa~aga~yi--spyvgR----~~d~g~d~~~~~~~~~~~~~~~~~~tkil~ 171 (211)
T d1wx0a1 100 LKACKRLSAE--GIKVNMTLIFSANQALLAARAGASYV--SPFLGR----VDDISWDGGELLREIVEMIQVQDLPVKVIA 171 (211)
T ss_dssp HHHHHHHHHT--TCCEEEEEECSHHHHHHHHHTTCSEE--EEBHHH----HHHTTSCHHHHHHHHHHHHHHTTCSCEEEE
T ss_pred hHHHHHHhhc--CCceeEEEecCHHHHHHHHHcCCCEE--EEeeec----chhccccchhHHHHHHHHHHhccccceeEe
Confidence 5567778777 78887777889999999999999998 333333 345666 555566666665543 356665
Q ss_pred cCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 436 DGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 436 ~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
+-+|+..++..+..+|||.+-+...+
T Consensus 172 -AS~R~~~~~~~~~~~G~d~vTi~~~v 197 (211)
T d1wx0a1 172 -ASIRHPRHVTEAALLGADIATMPHAV 197 (211)
T ss_dssp -BCCCSHHHHHHHHHTTCSEEEECHHH
T ss_pred -eecCCHHHHHHHHHcCCCEEEeCHHH
Confidence 67999999999999999999888655
|
| >d1l6wa_ c.1.10.1 (A:) Decameric fructose-6-phosphate aldolase/transaldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Decameric fructose-6-phosphate aldolase/transaldolase species: Escherichia coli [TaxId: 562]
Probab=94.48 E-value=0.043 Score=50.23 Aligned_cols=120 Identities=14% Similarity=0.159 Sum_probs=81.1
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCcc
Q psy1056 331 DKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQ 410 (590)
Q Consensus 331 ~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~ 410 (590)
..+.+..+.+.+-++ +|-.+- ...-++.++.+.+. ++++-+=.|-|..++..+.++|++++ ++..+| ..
T Consensus 68 mi~~A~~l~~~~~nv-~IKIP~--t~~g~~ai~~L~~~--Gi~vn~Tavfs~~Qa~~Aa~aga~yv--spy~gR----~~ 136 (220)
T d1l6wa_ 68 MVNDALKLRSIIADI-VVKVPV--TAEGLAAIKMLKAE--GIPTLGTAVYGAAQGLLSALAGAEYV--APYVNR----ID 136 (220)
T ss_dssp HHHHHHHHHHHSTTC-EEEEEC--SHHHHHHHHHHHHH--TCCEEEEEECSHHHHHHHHHHTCSEE--EEBHHH----HH
T ss_pred hHHHHHHHHHhcccc-EEEeec--cccccchhhhhhhc--ccchhhhhcccHHHHHHhhhcCCcEE--eeeeee----hh
Confidence 344455555544332 222221 12226678888877 78887777889999999999999998 333333 34
Q ss_pred cccc-chhHHHHHHHHHhcC--CCcEEecCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 411 VIGR-NGTAVYRVAEYASRR--GVPVIADGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 411 ~~g~-~~~~l~~~~~~~~~~--~v~iia~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
++|. ....+.++.+..... +..|++ +.+|+..++..|..+|||.+-+.+.+
T Consensus 137 d~g~dg~~~i~~~~~~~~~~~~~tkIl~-AS~R~~~~v~~~~~~G~d~iTip~~v 190 (220)
T d1l6wa_ 137 AQGGSGIQTVTDLHQLLKMHAPQAKVLA-ASFKTPRQALDCLLAGCESITLPLDV 190 (220)
T ss_dssp HTTSCHHHHHHHHHHHHHHHCTTCEEEE-BCCSSHHHHHHHHHTTCSEEEECHHH
T ss_pred hcccCChHHHHHHHHHHHhcCCCceEee-hhcCCHHHHHHHHHcCCCEEEcCHHH
Confidence 5666 555666666654332 355555 78999999999999999999988666
|
| >d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Streptomyces coelicolor [TaxId: 1902]
Probab=94.45 E-value=0.033 Score=51.68 Aligned_cols=72 Identities=19% Similarity=0.107 Sum_probs=50.2
Q ss_pred cHHHHHHHHCCCCEEEE-cccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECc
Q psy1056 382 GYQPRATLLNFIYQIEM-IKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGS 460 (590)
Q Consensus 382 ~~~a~~l~~~Gvd~i~v-~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~ 460 (590)
.+.|+.+.+.|+|.+-+ .+..... -+.....+ ...+....+|+..+|||++-.++.+.+.+||+.|.+|+
T Consensus 34 ~~~a~~~~~~ga~~l~i~DLd~~~~------~~~~~~~i---~~i~~~~~~pi~vGGGIrs~~~~~~ll~~Ga~kVvi~s 104 (239)
T d1vzwa1 34 LEAALAWQRSGAEWLHLVDLDAAFG------TGDNRALI---AEVAQAMDIKVELSGGIRDDDTLAAALATGCTRVNLGT 104 (239)
T ss_dssp HHHHHHHHHTTCSEEEEEEHHHHHT------SCCCHHHH---HHHHHHCSSEEEEESSCCSHHHHHHHHHTTCSEEEECH
T ss_pred HHHHHHHHHcCCCEEEEEeeccccc------ccchHHHH---HHHHhhcCcceEeecccccchhhhhhhccccccchhhH
Confidence 35677788899999866 1111111 01122223 33344456999999999999999999999999999997
Q ss_pred cc
Q psy1056 461 LL 462 (590)
Q Consensus 461 ~l 462 (590)
..
T Consensus 105 ~~ 106 (239)
T d1vzwa1 105 AA 106 (239)
T ss_dssp HH
T ss_pred Hh
Confidence 54
|
| >d1o4ua1 c.1.17.1 (A:104-273) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.36 E-value=0.017 Score=50.66 Aligned_cols=90 Identities=11% Similarity=-0.016 Sum_probs=62.3
Q ss_pred HHHHHHHHHHhCC-CceEEeccccCcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhc--CCCcEE
Q psy1056 358 QIEMIKFIKKEYP-DMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASR--RGVPVI 434 (590)
Q Consensus 358 ~l~~i~~i~~~~~-~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~--~~v~ii 434 (590)
+.+.++.+++..| ..++.+ ++.+.+++.+++++|+|.|-+. +. +++.+.++.+.++. ..+.+-
T Consensus 64 ~~~~~~~~~~~~~~~~~I~V-Ev~~~~e~~~a~~~g~d~i~LD-----------n~--~pe~~k~~~~~lk~~~~~i~lE 129 (170)
T d1o4ua1 64 AERAVQEVRKIIPFTTKIEV-EVENLEDALRAVEAGADIVMLD-----------NL--SPEEVKDISRRIKDINPNVIVE 129 (170)
T ss_dssp HHHHHHHHHTTSCTTSCEEE-EESSHHHHHHHHHTTCSEEEEE-----------SC--CHHHHHHHHHHHHHHCTTSEEE
T ss_pred HHHHHHHHHhhCCCCceEEE-EeCcHHHHHHHHhcCccEEEEc-----------Cc--ChhhHhHHHHHHHhhCCcEEEE
Confidence 4567777777665 345555 8999999999999999988221 11 33334444333322 247899
Q ss_pred ecCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 435 ADGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 435 a~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
+|||| |...+.+--..|+|.+.+|.+.
T Consensus 130 aSGGI-~~~ni~~~a~~GVD~Is~g~lt 156 (170)
T d1o4ua1 130 VSGGI-TEENVSLYDFETVDVISSSRLT 156 (170)
T ss_dssp EEECC-CTTTGGGGCCTTCCEEEEGGGT
T ss_pred EECCC-CHHHHHHHHHcCCCEEEcCccc
Confidence 99999 6666765555899999999876
|
| >d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermotoga maritima [TaxId: 2336]
Probab=94.25 E-value=0.048 Score=51.05 Aligned_cols=73 Identities=14% Similarity=0.076 Sum_probs=52.5
Q ss_pred HHHHHHHHCCCCEEEE-cccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcc
Q psy1056 383 YQPRATLLNFIYQIEM-IKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSL 461 (590)
Q Consensus 383 ~~a~~l~~~Gvd~i~v-~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~ 461 (590)
+.|+.+.+.|+|.+-+ ....... + ....+..+.+.++...+|+..+||||+-.++.+.+.+||+-|.+|+.
T Consensus 34 ~~a~~~~~~g~dei~ivDld~~~~-------~-~~~~~~~i~~i~~~~~~pi~vgGGIr~~e~i~~~l~~Ga~kviigs~ 105 (253)
T d1thfd_ 34 ELGKFYSEIGIDELVFLDITASVE-------K-RKTMLELVEKVAEQIDIPFTVGGGIHDFETASELILRGADKVSINTA 105 (253)
T ss_dssp HHHHHHHHTTCCEEEEEESSCSSS-------H-HHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHTTCSEEEESHH
T ss_pred HHHHHHHHcCCCEEEEEeeccccc-------C-cccHHHHHHHHHhccCccceeecccccchhhhhHHhcCCCEEEEChH
Confidence 5678888999998855 2211111 1 11112234555566679999999999999999999999999999976
Q ss_pred cc
Q psy1056 462 LA 463 (590)
Q Consensus 462 l~ 463 (590)
..
T Consensus 106 ~~ 107 (253)
T d1thfd_ 106 AV 107 (253)
T ss_dssp HH
T ss_pred Hh
Confidence 64
|
| >d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Cobalamin (vitamin B12)-binding domain family: Cobalamin (vitamin B12)-binding domain domain: Methylmalonyl-CoA mutase alpha subunit, C-terminal domain species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]
Probab=94.18 E-value=0.069 Score=46.61 Aligned_cols=72 Identities=18% Similarity=0.086 Sum_probs=58.7
Q ss_pred eccchhHHHHHHHHHHcCCcEEEEecCCCch-hhHHHHHHHHHHh-CCCceEEeccccCcHHHHHHHHCCCCEE
Q psy1056 325 IGTREADKNRLKLLSQAGVDVVILDSSQGNS-IYQIEMIKFIKKE-YPDMQVIGGNVLFGYQPRATLLNFIYQI 396 (590)
Q Consensus 325 i~~~~~~~e~~~~li~~gad~i~V~~~~G~~-~~~l~~i~~i~~~-~~~vpvi~g~v~s~~~a~~l~~~Gvd~i 396 (590)
++...+..+.++...+.++|++.+.+..+.. ..+.+.++.+++. .++++|++|++...++...|.++|++.|
T Consensus 71 lg~~~~~e~iv~aa~~~~advI~iSs~~~~~~~~~~~l~~~L~~~g~~~v~VivGG~ip~~d~~~l~~~Gv~~i 144 (168)
T d7reqa2 71 GPLFQTPEETARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILITVGGVIPEQDFDELRKDGAVEI 144 (168)
T ss_dssp CCTTBCHHHHHHHHHHHTCSEEEEEECSSCHHHHHHHHHHHHHHTTCTTSEEEEEESCCGGGHHHHHHHTEEEE
T ss_pred CCCcCcHHHHHHHHHccCCCEEEEecCcccchHHHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHhCCCCEE
Confidence 3444566788999999999999998766544 5567788888887 4679999999988899999999999987
|
| >d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Thermus thermophilus [TaxId: 274]
Probab=94.02 E-value=0.21 Score=45.06 Aligned_cols=123 Identities=14% Similarity=0.147 Sum_probs=73.1
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCC--ceEE--ec----ccc---CcHHHHHHHHCCCCEEE
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPD--MQVI--GG----NVL---FGYQPRATLLNFIYQIE 397 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~--vpvi--~g----~v~---s~~~a~~l~~~Gvd~i~ 397 (590)
++..+..+...+.++..++|... .+...++.+++ +.+. ++ ... -..+++.+++.|||-||
T Consensus 18 ~~i~~lc~~A~~~~~~aVcV~P~---------~v~~a~~~l~~s~v~v~~VigFP~G~~~~~~k~~e~~~ai~~GA~EiD 88 (211)
T d1ub3a_ 18 EEVAKAAEEALEYGFYGLCIPPS---------YVAWVRARYPHAPFRLVTVVGFPLGYQEKEVKALEAALACARGADEVD 88 (211)
T ss_dssp HHHHHHHHHHHHHTCSEEECCGG---------GHHHHHHHCTTCSSEEEEEESTTTCCSCHHHHHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHHHHHhCCeEEEECHH---------HHHHHHHHccCCCCceEEEEecccccCcHHHHHHHHHHHHHcCCCeEE
Confidence 34455677777889999987443 22333444432 3222 11 111 34678889999999999
Q ss_pred EcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHH----HHHcCCCEEEECccc
Q psy1056 398 MIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMK----ALALGASTAMMGSLL 462 (590)
Q Consensus 398 v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~k----alalGA~~v~~g~~l 462 (590)
+-+..+.-++ ..|..-..-+..+.+.+.+.-+.+|.+-|..+..++.+ |+..|||+|--++-|
T Consensus 89 ~V~n~~~~~~--g~~~~v~~ei~~v~~~~~~~~lKVIlEt~~L~~~ei~~a~~~a~~aGadfiKTSTG~ 155 (211)
T d1ub3a_ 89 MVLHLGRAKA--GDLDYLEAEVRAVREAVPQAVLKVILETGYFSPEEIARLAEAAIRGGADFLKTSTGF 155 (211)
T ss_dssp EECCHHHHHT--TCHHHHHHHHHHHHHHSTTSEEEEECCGGGSCHHHHHHHHHHHHHHTCSEEECCCSS
T ss_pred Eeeccchhhc--CCHHHHHHHHHHHHHhccCCceEEEeccccCCHHHHHHHHHHHHHhccceEEecCCC
Confidence 8322221100 11222222345566666543467999999999999887 566799999665544
|
| >d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=93.74 E-value=0.07 Score=49.87 Aligned_cols=72 Identities=21% Similarity=0.197 Sum_probs=50.3
Q ss_pred HHHHHHHHCCCCEEEE-cccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcc
Q psy1056 383 YQPRATLLNFIYQIEM-IKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSL 461 (590)
Q Consensus 383 ~~a~~l~~~Gvd~i~v-~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~ 461 (590)
+.|+.+.+.|+|.+-+ ....... +. ......+.+.+....+|+..+||||+-.++-+.+.+||+-|.+|+.
T Consensus 36 ~~a~~~~~~gadei~ivDl~~~~~-------~~-~~~~~~i~~i~~~~~~pi~~gGGIr~~e~~~~ll~~G~~kVii~s~ 107 (252)
T d1h5ya_ 36 EMAVRYEEEGADEIAILDITAAPE-------GR-ATFIDSVKRVAEAVSIPVLVGGGVRSLEDATTLFRAGADKVSVNTA 107 (252)
T ss_dssp HHHHHHHHTTCSCEEEEECCCCTT-------TH-HHHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHHTCSEEEESHH
T ss_pred HHHHHHHHCCCCEEEEEecccccc-------cc-ccHHHHHHHHHhhcCCcceeecccchhhhhhhHhhcCCcEEEeccc
Confidence 5678888999998844 2222211 11 1112223444445579999999999999999999999999999965
Q ss_pred c
Q psy1056 462 L 462 (590)
Q Consensus 462 l 462 (590)
.
T Consensus 108 ~ 108 (252)
T d1h5ya_ 108 A 108 (252)
T ss_dssp H
T ss_pred c
Confidence 4
|
| >d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermus thermophilus [TaxId: 274]
Probab=93.70 E-value=0.054 Score=50.60 Aligned_cols=72 Identities=24% Similarity=0.146 Sum_probs=50.9
Q ss_pred HHHHHHHHCCCCEEEE-cccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcc
Q psy1056 383 YQPRATLLNFIYQIEM-IKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSL 461 (590)
Q Consensus 383 ~~a~~l~~~Gvd~i~v-~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~ 461 (590)
+.|+.+.+.|+|.+-+ ....... + ...-...+.+.+....+|+..+||||+..++-+.+.+||+.|.+|+.
T Consensus 34 ~~a~~~~~~g~dei~iiDl~~~~~-------~-~~~~~~~i~~i~~~~~~pi~vgGGIrs~e~~~~ll~~Ga~kVii~s~ 105 (251)
T d1ka9f_ 34 EAARAYDEAGADELVFLDISATHE-------E-RAILLDVVARVAERVFIPLTVGGGVRSLEDARKLLLSGADKVSVNSA 105 (251)
T ss_dssp HHHHHHHHHTCSCEEEEECCSSTT-------C-HHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHHTCSEEEECHH
T ss_pred HHHHHHHHcCCCEEEEEecccccc-------c-chhHHHHHHHHHhccCcchheeccccCHHHHHHHHHcCCCEEEECch
Confidence 4667788899998854 2211111 0 11112234555556679999999999999999999999999999976
Q ss_pred c
Q psy1056 462 L 462 (590)
Q Consensus 462 l 462 (590)
.
T Consensus 106 ~ 106 (251)
T d1ka9f_ 106 A 106 (251)
T ss_dssp H
T ss_pred h
Confidence 5
|
| >d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]
Probab=93.32 E-value=0.042 Score=53.20 Aligned_cols=74 Identities=12% Similarity=0.069 Sum_probs=51.1
Q ss_pred cHHHHHHHHCCCCEEEE-cccccccCCCcccccc-chhH-HHHHHHHHhcCCCcEEecCCCCCHHH-----------HHH
Q psy1056 382 GYQPRATLLNFIYQIEM-IKFIKKEYPDMQVIGR-NGTA-VYRVAEYASRRGVPVIADGGVQSVGH-----------VMK 447 (590)
Q Consensus 382 ~~~a~~l~~~Gvd~i~v-~~~~~~~~~~~~~~g~-~~~~-l~~~~~~~~~~~v~iia~GGi~~~~d-----------i~k 447 (590)
.+.|+...+.|||.|-+ .+...+. +. .-.. +..+.+.++...+|+-..||||+-.| +.+
T Consensus 51 ~~~a~~~~~~gaDeL~ivDidas~~-------~~~~~~~~~~~I~~i~~~~~vPi~vGGGIrsi~di~~~~~~~~e~A~~ 123 (323)
T d1jvna1 51 VQLAQKYYQQGADEVTFLNITSFRD-------CPLKDTPMLEVLKQAAKTVFVPLTVGGGIKDIVDVDGTKIPALEVASL 123 (323)
T ss_dssp HHHHHHHHHTTCSEEEEEEEC---C-------CCGGGCHHHHHHHHHTTTCCSCEEEESSCSCEECTTCCEECHHHHHHH
T ss_pred HHHHHHHHHCCCCEEEEEECcCCCC-------CcCCCchHHHHHHhhccccceeEEEecCcccHHHhhhccchhhHHHHH
Confidence 36678888999998854 2222211 11 1122 33355566667899999999999655 578
Q ss_pred HHHcCCCEEEECccc
Q psy1056 448 ALALGASTAMMGSLL 462 (590)
Q Consensus 448 alalGA~~v~~g~~l 462 (590)
.|.+|||-|.+|+..
T Consensus 124 ll~~GadKVvI~T~a 138 (323)
T d1jvna1 124 YFRSGADKVSIGTDA 138 (323)
T ss_dssp HHHHTCSEEEECHHH
T ss_pred HHHcCCCeEEechHH
Confidence 999999999999865
|
| >d1mzha_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Aquifex aeolicus [TaxId: 63363]
Probab=93.30 E-value=0.22 Score=45.34 Aligned_cols=123 Identities=8% Similarity=-0.019 Sum_probs=71.2
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEE--ec----ccc---CcHHHHHHHHCCCCEEEEc
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVI--GG----NVL---FGYQPRATLLNFIYQIEMI 399 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi--~g----~v~---s~~~a~~l~~~Gvd~i~v~ 399 (590)
.+.....+...+.++..++|... + +...++.++++.+. +| .-. -..+++.+++.|||-||+-
T Consensus 20 ~~i~~lc~~A~~~~~~aVcV~P~-----~----v~~a~~~l~~vkv~tVigFP~G~~~~~~K~~E~~~Ai~~GAdEID~V 90 (225)
T d1mzha_ 20 KEIEEFVLKSEELGIYAVCVNPY-----H----VKLASSIAKKVKVCCVIGFPLGLNKTSVKVKEAVEAVRDGAQELDIV 90 (225)
T ss_dssp HHHHHHHHHHHHTTCSEEEECGG-----G----HHHHHHHCSSSEEEEEESTTTCCSCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHHHhCCcEEEECHH-----H----HHHHHhhccCCceEEEeccCCCCCcHHHHHHHHHHHHHcCCCeEEEe
Confidence 34555677888889999998432 1 22333344455443 21 111 2366788999999999983
Q ss_pred ccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHH----HHHcCCCEEEECccc
Q psy1056 400 KFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMK----ALALGASTAMMGSLL 462 (590)
Q Consensus 400 ~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~k----alalGA~~v~~g~~l 462 (590)
+....-++ ..|..-..-+..+.+.+...-+.+|.+-|..+..++.+ |+..|||+|--++-|
T Consensus 91 in~~~l~~--g~~~~v~~ei~~v~~~~~~~~lKVIlEt~~L~~~ei~~a~~~a~~aGadfiKTSTG~ 155 (225)
T d1mzha_ 91 WNLSAFKS--EKYDFVVEELKEIFRETPSAVHKVIVETPYLNEEEIKKAVEICIEAGADFIKTSTGF 155 (225)
T ss_dssp CCHHHHHT--TCHHHHHHHHHHHHHTCTTSEEEEECCGGGCCHHHHHHHHHHHHHHTCSEEECCCSC
T ss_pred echhhhhc--ccHHHHHHHHHHHHHhccCceeehhhhhccCCHHHHHHHHHHHHHcccceEeecCCC
Confidence 22111100 01111112233333433332357899999999999887 566899999655544
|
| >d2a4aa1 c.1.10.1 (A:3-258) Fructose-1,6-bisphosphate aldolase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Fructose-1,6-bisphosphate aldolase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=92.56 E-value=0.22 Score=46.25 Aligned_cols=117 Identities=14% Similarity=0.053 Sum_probs=66.6
Q ss_pred HHHHHHHHcCCcEEEEecCC-----CchhhHHHH---HHHHHHhCCC--ceEEecc--ccCcHH---HHH-HHHCCCCEE
Q psy1056 333 NRLKLLSQAGVDVVILDSSQ-----GNSIYQIEM---IKFIKKEYPD--MQVIGGN--VLFGYQ---PRA-TLLNFIYQI 396 (590)
Q Consensus 333 e~~~~li~~gad~i~V~~~~-----G~~~~~l~~---i~~i~~~~~~--vpvi~g~--v~s~~~---a~~-l~~~Gvd~i 396 (590)
..++..++.|++-+-+..+- |....+.+. +..+++...+ +.||+-. ..+.+. +.. +.++|+|+|
T Consensus 89 ~Ea~~Ai~~GAdEID~Vin~~~l~~g~~~~v~e~~~~i~~~~~~~~~~~lKVIlEt~~L~~~e~i~~~~~~~~~aGadFV 168 (256)
T d2a4aa1 89 NDTEKALDDGADEIDLVINYKKIIENTDEGLKEATKLTQSVKKLLTNKILKVIIEVGELKTEDLIIKTTLAVLNGNADFI 168 (256)
T ss_dssp HHHHHHHHHTCSEEEEECCHHHHHHSHHHHHHHHHHHHHHHHTTCTTSEEEEECCHHHHCSHHHHHHHHHHHHTTTCSEE
T ss_pred HHHHHHHHcCCCeEEEeccHHHHhcCcHHHHHHHHHHHHHHHhhccCCeeEeeehhhhcCcHHHHHHHHHHHHhcccHHH
Confidence 35677788999977554432 332333333 3444443322 3455422 223332 222 357999999
Q ss_pred EEcccccccCCCccccccchhHHHHHHHHHh---------cCCCcEEecCCCCCHHHHHHHHHcCCCEE
Q psy1056 397 EMIKFIKKEYPDMQVIGRNGTAVYRVAEYAS---------RRGVPVIADGGVQSVGHVMKALALGASTA 456 (590)
Q Consensus 397 ~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~---------~~~v~iia~GGi~~~~di~kalalGA~~v 456 (590)
+ |.-. |.+.|.++..+..+.+..+ ...+.|=|+|||||..++.+-+.+||+.+
T Consensus 169 K----TSTG---~~~~gat~~~v~~m~~~v~e~~~~~~~~g~~~gVKASGGIrt~~~a~~~i~~g~~~l 230 (256)
T d2a4aa1 169 K----TSTG---KVQINATPSSVEYIIKAIKEYIKNNPEKNNKIGLKVSGGISDLNTASHYILLARRFL 230 (256)
T ss_dssp E----CCCS---CSSCCCCHHHHHHHHHHHHHHHHHCGGGTTCCEEEEESSCCSHHHHHHHHHHHHHHT
T ss_pred H----hccC---CCCCCCCHHHHHHHHHHHHHHHhhccccCCceeEEecCCCCCHHHHHHHHHHHHHhc
Confidence 2 2111 3333335555444433331 23588999999999999999999998864
|
| >d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydropyrimidine dehydrogenase, domain 4 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=92.49 E-value=0.2 Score=48.05 Aligned_cols=68 Identities=12% Similarity=0.146 Sum_probs=50.7
Q ss_pred HHHHHHHHHHcCCcEEEEecC---------C-------------------Cc--hhhHHHHHHHHHHhCCCceEE-eccc
Q psy1056 331 DKNRLKLLSQAGVDVVILDSS---------Q-------------------GN--SIYQIEMIKFIKKEYPDMQVI-GGNV 379 (590)
Q Consensus 331 ~~e~~~~li~~gad~i~V~~~---------~-------------------G~--~~~~l~~i~~i~~~~~~vpvi-~g~v 379 (590)
..+.++.+.++|++.+.+... . |. ....++.++.+++..+++|+| .|+|
T Consensus 185 ~~~i~~~~~~~g~~gi~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~gg~sG~~i~~~al~~v~~~~~~~~~ipIi~~GGI 264 (312)
T d1gtea2 185 IVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVTTIARALPGFPILATGGI 264 (312)
T ss_dssp HHHHHHHHHHHTCSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCCEEEESGGGHHHHHHHHHHHHHHSTTCCEEEESSC
T ss_pred HHHHHHHHHHhcccceEEEeecccccccccccccccccccccccccccccCcCcchhhHHHHHHHHHHcCCCcEEEEcCC
Confidence 446677788899998765321 0 00 012367888899988888988 6888
Q ss_pred cCcHHHHHHHHCCCCEEEE
Q psy1056 380 LFGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 380 ~s~~~a~~l~~~Gvd~i~v 398 (590)
.+.+++.+.+.+|||++-|
T Consensus 265 ~~~~d~~~~l~aGA~~Vqv 283 (312)
T d1gtea2 265 DSAESGLQFLHSGASVLQV 283 (312)
T ss_dssp CSHHHHHHHHHTTCSEEEE
T ss_pred CCHHHHHHHHHcCCCeeEE
Confidence 8999999999999999844
|
| >d2basa1 c.1.33.1 (A:2-262) Hypothetical protein YkuI, N-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: EAL domain-like family: EAL domain domain: Hypothetical protein YkuI, N-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=92.20 E-value=0.59 Score=43.11 Aligned_cols=128 Identities=15% Similarity=0.123 Sum_probs=82.2
Q ss_pred HHHHHHHHcCC--cEEEEecCC----CchhhHHHHHHHHHHhCCCceEEecccc-CcHHHHHHHHCCCCEEEEccccccc
Q psy1056 333 NRLKLLSQAGV--DVVILDSSQ----GNSIYQIEMIKFIKKEYPDMQVIGGNVL-FGYQPRATLLNFIYQIEMIKFIKKE 405 (590)
Q Consensus 333 e~~~~li~~ga--d~i~V~~~~----G~~~~~l~~i~~i~~~~~~vpvi~g~v~-s~~~a~~l~~~Gvd~i~v~~~~~~~ 405 (590)
+.+..+.+.+. ..+++..++ .+.....+.++.+++. ++.+.+.+.+ .......+...++|+|+++....+.
T Consensus 103 ~~l~~l~~~~l~~~~lvlEi~E~~~~~~~~~~~~~l~~L~~~--G~~lalddfG~~~~sl~~L~~l~~d~IKld~s~i~~ 180 (261)
T d2basa1 103 ELLKEYEAKGIELHRFVLEITEHNFEGDIEQLYHMLAYYRTY--GIKIAVDNIGKESSNLDRIALLSPDLLKIDLQALKV 180 (261)
T ss_dssp HHHHHHHHTTCCGGGEEEEECCTTCCSCHHHHHHHHHHHHTT--TCEEEEEEETTTBCCHHHHHHHCCSEEEEECTTTC-
T ss_pred HHHHHHhhhCCCcccceeeeehhhhhhhHHHHHHHHHHHhhc--CceeeecCCccCccchhHHhhhhhhhhhcccccccc
Confidence 34455555554 334443332 3344566778888776 7888888887 4566778888999999884332222
Q ss_pred CCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccCCCC
Q psy1056 406 YPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAGTSE 467 (590)
Q Consensus 406 ~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~~~e 467 (590)
...-......+..+...++..++++|| .||-|..+...+..+|+++++ |..|..+.+
T Consensus 181 ---~~~~~~~~~~l~~l~~~a~~~~~~vIa-eGVE~~~~~~~l~~lg~d~~Q-G~~~~~P~~ 237 (261)
T d2basa1 181 ---SQPSPSYEHVLYSISLLARKIGAALLY-EDIEANFQLQYAWRNGGRYFQ-GYYLVSPSE 237 (261)
T ss_dssp ------CCHHHHHHHHHHHHHHHHTCEEEE-ECCCSHHHHHHHHHTTEEEEC-STTTCCCBS
T ss_pred ---cccchhhHHHHHHHHHHHHHcCCEEEE-EeCCcHHHHHHHHHcCCCEEE-CCcccccCC
Confidence 110000122234455556666899988 479999999999999999885 888866543
|
| >d2tpsa_ c.1.3.1 (A:) Thiamin phosphate synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Thiamin phosphate synthase family: Thiamin phosphate synthase domain: Thiamin phosphate synthase species: Bacillus subtilis [TaxId: 1423]
Probab=92.20 E-value=0.45 Score=43.25 Aligned_cols=111 Identities=14% Similarity=0.108 Sum_probs=70.9
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCC---chhhH---HHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEccccc
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQG---NSIYQ---IEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIK 403 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G---~~~~~---l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~ 403 (590)
+..+.++.+++.|++.+.+-..+. ..+.. ...+..+.+.+ ++++++.+ ....+.+.|+|+| +.+
T Consensus 31 ~~~~~v~~al~~Gv~~iqlR~K~~~~~~~~~~~~~a~~l~~lc~~~-~~~liInd-----~~~lA~~~~adGv----Hl~ 100 (226)
T d2tpsa_ 31 DPVTVVQKALKGGATLYQFREKGGDALTGEARIKFAEKAQAACREA-GVPFIVND-----DVELALNLKADGI----HIG 100 (226)
T ss_dssp CHHHHHHHHHHHTCSEEEECCCSTTCCCHHHHHHHHHHHHHHHHHH-TCCEEEES-----CHHHHHHHTCSEE----EEC
T ss_pred CHHHHHHHHHHCCCCEEEEcCCCccchhHHHHHHHHHHHHHHHHHh-CCeEEEcC-----CHHHHhhccCCEE----Eec
Confidence 446788899999999998864332 11222 34455555555 68877632 3445566789999 433
Q ss_pred ccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECccccC
Q psy1056 404 KEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSLLAG 464 (590)
Q Consensus 404 ~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~l~~ 464 (590)
.. . .....++..... . +..+-..|..++.+|...|||++.+|+.|..
T Consensus 101 ~~---------d-~~~~~~r~~~~~--~--iig~S~h~~~e~~~a~~~g~DYi~~gpvf~T 147 (226)
T d2tpsa_ 101 QE---------D-ANAKEVRAAIGD--M--ILGVSAHTMSEVKQAEEDGADYVGLGPIYPT 147 (226)
T ss_dssp TT---------S-SCHHHHHHHHTT--S--EEEEEECSHHHHHHHHHHTCSEEEECCSSCC
T ss_pred cc---------c-chhhhhhhcccc--e--eeeeeccchHHHHHHHhCcCCeEEEeccccc
Confidence 22 1 112344444332 2 3334567999999999999999999999853
|
| >d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: ThiG-like family: ThiG-like domain: Thiazole biosynthesis protein ThiG species: Bacillus subtilis [TaxId: 1423]
Probab=92.06 E-value=0.34 Score=43.96 Aligned_cols=89 Identities=16% Similarity=0.042 Sum_probs=66.2
Q ss_pred CHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCCCCCCcccCCceEEeEeeccchhHHHHHHHHHHcCCcEEE
Q psy1056 268 SLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPDSSKDENNQLIVGAAIGTREADKNRLKLLSQAGVDVVI 347 (590)
Q Consensus 268 ~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li~~gad~i~ 347 (590)
..-+|.+.+.+.++..+|-.++| ...++.|.+.|+..+.
T Consensus 113 etl~Aae~Lv~eGF~VlpY~~~D-----------------------------------------~v~ak~Le~~Gc~avM 151 (251)
T d1xm3a_ 113 ETLKASEQLLEEGFIVLPYTSDD-----------------------------------------VVLARKLEELGVHAIM 151 (251)
T ss_dssp HHHHHHHHHHHTTCCEEEEECSC-----------------------------------------HHHHHHHHHHTCSCBE
T ss_pred HHHHHHHHHHhCCcEEEEecCCC-----------------------------------------HHHHHHHHHcCChhHH
Confidence 45678888889999888866532 3456788899998765
Q ss_pred Ee-cCCCchhhH--HHHHHHHHHhCCCceEEe-ccccCcHHHHHHHHCCCCEEEE
Q psy1056 348 LD-SSQGNSIYQ--IEMIKFIKKEYPDMQVIG-GNVLFGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 348 V~-~~~G~~~~~--l~~i~~i~~~~~~vpvi~-g~v~s~~~a~~l~~~Gvd~i~v 398 (590)
-- .+-|...|+ ...++.++++. ++|||+ .+++++.+|.++.+.|+|++-+
T Consensus 152 PlgsPIGSg~Gl~n~~~l~~i~~~~-~vPvIvDAGIG~pSdAa~AMElG~daVLv 205 (251)
T d1xm3a_ 152 PGASPIGSGQGILNPLNLSFIIEQA-KVPVIVDAGIGSPKDAAYAMELGADGVLL 205 (251)
T ss_dssp ECSSSTTCCCCCSCHHHHHHHHHHC-SSCBEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HhhhhhhcCCCcCChHHHHHHHhcC-CccEEEecCCCCHHHHHHHHHccCCEEEe
Confidence 32 233444443 56788888885 899986 5788999999999999999944
|
| >d1o0ya_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Thermotoga maritima [TaxId: 2336]
Probab=91.92 E-value=0.53 Score=43.34 Aligned_cols=125 Identities=12% Similarity=-0.004 Sum_probs=74.1
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEE--ec----ccc---CcHHHHHHHHCCCCEEEEc
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVI--GG----NVL---FGYQPRATLLNFIYQIEMI 399 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi--~g----~v~---s~~~a~~l~~~Gvd~i~v~ 399 (590)
.+.....+...+.++..++|... ++.-.-+.++. . ++.+. ++ .-. -..+++.+++.|||-||+-
T Consensus 51 e~i~~lc~~A~~~~~aaVcV~P~-----~v~~a~~~L~g-s-~v~v~tVigFP~G~~~~~~K~~Ea~~Ai~~GAdEID~V 123 (251)
T d1o0ya_ 51 DDIKKLCLEARENRFHGVCVNPC-----YVKLAREELEG-T-DVKVVTVVGFPLGANETRTKAHEAIFAVESGADEIDMV 123 (251)
T ss_dssp HHHHHHHHHHHHHTCSEEEECGG-----GHHHHHHHHTT-S-CCEEEEEESTTTCCSCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHHHhhcCceEEEECHH-----HHHHHHHHhcC-C-CceEEeeccCCCCCCcHHHHHHHHHHHHHcCCceEEEE
Confidence 34455677778889999998443 11112222221 1 34332 21 111 2457788999999999983
Q ss_pred ccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHH----HHHcCCCEEEECccc
Q psy1056 400 KFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMK----ALALGASTAMMGSLL 462 (590)
Q Consensus 400 ~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~k----alalGA~~v~~g~~l 462 (590)
+..+.-++ .+|-.-..-+..+++++...-+.+|.+-+..+..++.+ |+..|||+|--++-|
T Consensus 124 in~~~l~~--g~~~~v~~ei~~v~~~~~~~~lKVIlEt~~L~~~e~~~a~~ia~~aGadfvKTSTGf 188 (251)
T d1o0ya_ 124 INVGMLKA--KEWEYVYEDIRSVVESVKGKVVKVIIETCYLDTEEKIAACVISKLAGAHFVKTSTGF 188 (251)
T ss_dssp CCHHHHHT--TCHHHHHHHHHHHHHHTTTSEEEEECCGGGCCHHHHHHHHHHHHHTTCSEEECCCSS
T ss_pred eccchhhc--CCHHHHHHHHHHHHHHhcccceeeeecccccCcHHHHHHHHHHHHhCcceeeccCCC
Confidence 32222100 11222223355566666544478999999999999987 456799999666655
|
| >d1vcva1 c.1.10.1 (A:1-226) Deoxyribose-phosphate aldolase DeoC {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=91.56 E-value=0.78 Score=41.51 Aligned_cols=123 Identities=7% Similarity=-0.092 Sum_probs=67.6
Q ss_pred HHHHHHHcCCcEEEEecC-----CCchhhHHHHHHHHHHhCCC--ceEEecccc--CcHH----HHHHHHCCCCEEEEcc
Q psy1056 334 RLKLLSQAGVDVVILDSS-----QGNSIYQIEMIKFIKKEYPD--MQVIGGNVL--FGYQ----PRATLLNFIYQIEMIK 400 (590)
Q Consensus 334 ~~~~li~~gad~i~V~~~-----~G~~~~~l~~i~~i~~~~~~--vpvi~g~v~--s~~~----a~~l~~~Gvd~i~v~~ 400 (590)
..++ +..|++-+-+..+ .|+...+.+.+..++....+ +.+|+ +.. +.++ ++.++++|+|+|+-|
T Consensus 72 e~~a-~~~GAdEID~Vin~~~~~~g~~~~v~~ei~~v~~~~~~~~lKVIl-Et~~L~~~ei~~~~~~~~~aGadFIKTS- 148 (226)
T d1vcva1 72 LVSR-LAEVADEIDVVAPIGLVKSRRWAEVRRDLISVVGAAGGRVVKVIT-EEPYLRDEERYTLYDIIAEAGAHFIKSS- 148 (226)
T ss_dssp HHHH-HTTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEEC-CGGGCCHHHHHHHHHHHHHHTCSEEECC-
T ss_pred HHHH-HHcCCCeeEEEecHHHHhCCCHHHHHHHHHHHHhccCCCeEEEEe-cccccCHHHHHHHHHHHHHcCcceeeec-
Confidence 3444 4459987655432 35555666667777766533 23443 222 3232 344566999999432
Q ss_pred cccccCCC-----ccccccchhHHHHHHHHHhc--CCCcEEecCCCCCHHHHHHHHHc-------CCCEEEECc
Q psy1056 401 FIKKEYPD-----MQVIGRNGTAVYRVAEYASR--RGVPVIADGGVQSVGHVMKALAL-------GASTAMMGS 460 (590)
Q Consensus 401 ~~~~~~~~-----~~~~g~~~~~l~~~~~~~~~--~~v~iia~GGi~~~~di~kalal-------GA~~v~~g~ 460 (590)
|+....+ ....|.|+..+..+.+..+. .++.|=++|||||..++.+-+.+ ||.-....+
T Consensus 149 -TGf~~~g~~~~~~~~~~at~~~~~~~~~~~~~~g~~vgiKasGGIrt~~~A~~~i~a~~~~~~~ga~RiGtSs 221 (226)
T d1vcva1 149 -TGFAEEAYAARQGNPVHSTPERAAAIARYIKEKGYRLGVKMAGGIRTREQAKAIVDAIGWGEDPARVRLGTST 221 (226)
T ss_dssp -CSCCCHHHHHHTTCCSSCCHHHHHHHHHHHHHHTCCCEEEEESSCCSHHHHHHHHHHHCSCSCTTTEEEEESC
T ss_pred -ccccCCcccccccCcccCcHHHHHHHHHHHHHhCCceeEECcCCCCCHHHHHHHHHhhhcCCCCCCEEEecCC
Confidence 1111000 00012244444444444432 25789999999999999887776 766654443
|
| >d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Thermotoga maritima [TaxId: 2336]
Probab=91.53 E-value=0.083 Score=48.94 Aligned_cols=72 Identities=17% Similarity=0.039 Sum_probs=49.0
Q ss_pred HHHHHHHHCCCCEEEE-cccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECcc
Q psy1056 383 YQPRATLLNFIYQIEM-IKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGSL 461 (590)
Q Consensus 383 ~~a~~l~~~Gvd~i~v-~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~~ 461 (590)
+.|+.+.+.|+|.+-+ ....... + +.... .+...+.....|+-..|||++-.++.+.+..||+-|.+++.
T Consensus 34 ~~a~~~~~~g~~~l~ivDLda~~~-----~-~~~~~---~~~~~~~~~~~pl~~gGGI~s~~~~~~~~~~Ga~kVvi~s~ 104 (241)
T d1qo2a_ 34 ELVEKLIEEGFTLIHVVDLSNAIE-----N-SGENL---PVLEKLSEFAEHIQIGGGIRSLDYAEKLRKLGYRRQIVSSK 104 (241)
T ss_dssp HHHHHHHHTTCCCEEEEEHHHHHH-----C-CCTTH---HHHHHGGGGGGGEEEESSCCSHHHHHHHHHTTCCEEEECHH
T ss_pred HHHHHHHHCCCCEEEEEecccccc-----c-CCcch---hheehhcccccchhhhhhhhhhhhhhhccccccceEecCcc
Confidence 5778888999998855 2211111 0 00111 12222333457999999999999999999999999999986
Q ss_pred cc
Q psy1056 462 LA 463 (590)
Q Consensus 462 l~ 463 (590)
+.
T Consensus 105 ~~ 106 (241)
T d1qo2a_ 105 VL 106 (241)
T ss_dssp HH
T ss_pred cc
Confidence 53
|
| >d2f6ua1 c.1.4.1 (A:1001-1231) (S)-3-O-geranylgeranylglyceryl phosphate synthase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: (S)-3-O-geranylgeranylglyceryl phosphate synthase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=91.26 E-value=0.062 Score=49.50 Aligned_cols=32 Identities=22% Similarity=0.350 Sum_probs=28.7
Q ss_pred CCcEEecCCCCCHHHHHHHHHcCCCEEEECccc
Q psy1056 430 GVPVIADGGVQSVGHVMKALALGASTAMMGSLL 462 (590)
Q Consensus 430 ~v~iia~GGi~~~~di~kalalGA~~v~~g~~l 462 (590)
++|++..+||+|+.++.+.. -|||+|.+|+.|
T Consensus 187 ~~Pv~VGFGI~s~e~a~~~~-~~ADgvIVGSai 218 (231)
T d2f6ua1 187 KARLFYGGGIDSREKAREML-RYADTIIVGNVI 218 (231)
T ss_dssp SSEEEEESCCCSHHHHHHHH-HHSSEEEECHHH
T ss_pred CCCEEEEeCcCCHHHHHHHH-hcCCEEEEChHH
Confidence 59999999999999997655 589999999988
|
| >d1ojxa_ c.1.10.1 (A:) Archaeal fructose 1,6-bisphosphate aldolase {Archaeon Thermoproteus tenax [TaxId: 2271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Archaeal fructose 1,6-bisphosphate aldolase species: Archaeon Thermoproteus tenax [TaxId: 2271]
Probab=90.57 E-value=1.3 Score=40.60 Aligned_cols=115 Identities=17% Similarity=0.177 Sum_probs=67.3
Q ss_pred HHHHHHcCCcEEEEecCCCch--hhHHHHHHHHHH---hCCCceEEec------ccc---C----cHHHHHHHHCCCCEE
Q psy1056 335 LKLLSQAGVDVVILDSSQGNS--IYQIEMIKFIKK---EYPDMQVIGG------NVL---F----GYQPRATLLNFIYQI 396 (590)
Q Consensus 335 ~~~li~~gad~i~V~~~~G~~--~~~l~~i~~i~~---~~~~vpvi~g------~v~---s----~~~a~~l~~~Gvd~i 396 (590)
++..+..|++.+.+....|.. ...++.+..+.+ ++ ++|+++- +.. + ...++.+.+.|+|.+
T Consensus 96 ve~a~rlGadaV~~~v~~g~~~e~~~l~~~~~v~~e~~~~-glP~v~e~~p~g~~~~~~~~~~~v~~aaria~ElGaDiv 174 (251)
T d1ojxa_ 96 VEEAVSLGASAVGYTIYPGSGFEWKMFEELARIKRDAVKF-DLPLVVWSYPRGGKVVNETAPEIVAYAARIALELGADAM 174 (251)
T ss_dssp HHHHHHTTCSEEEEEECTTSTTHHHHHHHHHHHHHHHHHH-TCCEEEEECCCSTTCCCTTCHHHHHHHHHHHHHHTCSEE
T ss_pred HHHHHhchhceEEEEEeCCCCchHHHHHHHHHHHHHHHHc-CCeEEEEEeecCCccccCCCHHHHHHHHHHHHHhCCCEE
Confidence 344678899998777655432 223444444332 33 6787631 222 2 234567788999999
Q ss_pred EEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCC--CHHHHH----HHHHcCCCEEEECccccC
Q psy1056 397 EMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQ--SVGHVM----KALALGASTAMMGSLLAG 464 (590)
Q Consensus 397 ~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~--~~~di~----kalalGA~~v~~g~~l~~ 464 (590)
++..... ......+... ...+|++..||=. +..+.. .|+..||..+.+||.+..
T Consensus 175 K~~~p~~------------~~~~~~~v~~--a~~~pv~~~gG~~~~~~~~~l~~~~~a~~~Ga~G~~~GRni~q 234 (251)
T d1ojxa_ 175 KIKYTGD------------PKTFSWAVKV--AGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQ 234 (251)
T ss_dssp EECCCSS------------HHHHHHHHHH--TTTSCEEEECCSCCSSHHHHHHHHHHHHHTTCCEEEESHHHHT
T ss_pred EecCCCc------------HHHHHHHHHh--cCCCceEEeCCCCCCCHHHHHHHHHHHHHCCCcEEeechhhhC
Confidence 7643221 1122222222 2247877777654 455554 478889999999998853
|
| >d1eixa_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Escherichia coli [TaxId: 562]
Probab=90.34 E-value=0.86 Score=41.33 Aligned_cols=174 Identities=12% Similarity=0.104 Sum_probs=87.1
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccccCCCC--CCcccCCceEEeEeeccch-hHHHHH
Q psy1056 259 EIISAQAGISLEEANVILEKSKKGKLPILNDKGELIALIARTDLKKSRDYPD--SSKDENNQLIVGAAIGTRE-ADKNRL 335 (590)
Q Consensus 259 ~~~tv~~~~~l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~~~~~~--~~~d~~~~l~v~a~i~~~~-~~~e~~ 335 (590)
+++..-.-.++.+++++..+-+- .+.++=.-.+++....... ..++.+..++...-+..-+ .....+
T Consensus 5 ~iivALD~~~~~eal~i~~~l~~----------~i~~iKiG~~l~~~~G~~~i~~l~~~~~~if~D~K~~DI~nt~~~~~ 74 (231)
T d1eixa_ 5 PVVVALDYHNRDDALAFVDKIDP----------RDCRLKVGKEMFTLFGPQFVRELQQRGFDIFLDLKFHDIPNTAAHAV 74 (231)
T ss_dssp CEEEEECCSSHHHHHHHHTTSCT----------TTCEEEEEHHHHHHHHHHHHHHHHHTTCCEEEEEEECSCHHHHHHHH
T ss_pred CEEEEEcCCCHHHHHHHHHHhCC----------cceEEEECHHHHhhcCHHHHHHHHhcCchhhHhhHhhcCcHHHHHHH
Confidence 44444455689999987765421 2222223333333211000 0112233445554443222 234467
Q ss_pred HHHHHcCCcEEEEecCCCchhhHHHHHHHHHH---hC-CCceEEec-cccCcH--------------------HHHHHHH
Q psy1056 336 KLLSQAGVDVVILDSSQGNSIYQIEMIKFIKK---EY-PDMQVIGG-NVLFGY--------------------QPRATLL 390 (590)
Q Consensus 336 ~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~---~~-~~vpvi~g-~v~s~~--------------------~a~~l~~ 390 (590)
+.+.+.|++.+.++...|. +.++.+.+ .+ ...+++++ ...+-. .+....+
T Consensus 75 ~~~~~~~~~~~tvh~~~g~-----~~l~~~~~~~~~~~~~~~~~~~v~~~ts~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 149 (231)
T d1eixa_ 75 AAAADLGVWMVNVHASGGA-----RMMTAAREALVPFGKDAPLLIAVTVLTSMEASDLVDLGMTLSPADYAERLAALTQK 149 (231)
T ss_dssp HHHHHHTCSEEEEBGGGCH-----HHHHHHHHTTGGGGGGCCEEEEECSCTTCCHHHHHTTTCCSCHHHHHHHHHHHHHH
T ss_pred HhhhcccceEEEEeccCcH-----HHHHHHHHhhhhcCccceEEEEEeeccccccchhcccccccchhHHHHHHHHHHHH
Confidence 7788889999999887663 23333332 11 12233322 112221 2334444
Q ss_pred CCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHH----------HHHHHHcCCCEEEECc
Q psy1056 391 NFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGH----------VMKALALGASTAMMGS 460 (590)
Q Consensus 391 ~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~d----------i~kalalGA~~v~~g~ 460 (590)
.|++++ +|. +..+..+++... .-.++.+.||+-... ...|+..|||.+++||
T Consensus 150 ~~~~~~---~~~-------------~~~~~~~~~~~~--~~~~~~tPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iIVGR 211 (231)
T d1eixa_ 150 CGLDGV---VCS-------------AQEAVRFKQVFG--QEFKLVTPGIRPQGSEAGDQRRIMTPEQALSAGVDYMVIGR 211 (231)
T ss_dssp TTCSEE---ECC-------------GGGHHHHHHHHC--SSSEEEECCBCCTTCCCTTCCSCBCHHHHHHTTCSEEEECH
T ss_pred hccccc---ccc-------------chhhhhhhhhcC--CccceecCCcccCCCCccCccccCCHHHHHHcCCCEEEECC
Confidence 555555 222 222333444332 245777888865321 4567788999999999
Q ss_pred cccCC
Q psy1056 461 LLAGT 465 (590)
Q Consensus 461 ~l~~~ 465 (590)
++..+
T Consensus 212 ~It~a 216 (231)
T d1eixa_ 212 PVTQS 216 (231)
T ss_dssp HHHTS
T ss_pred cccCC
Confidence 99543
|
| >d1s2wa_ c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mussel (Mytilus edulis) [TaxId: 6550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: Phosphoenolpyruvate mutase species: Blue mussel (Mytilus edulis) [TaxId: 6550]
Probab=90.13 E-value=0.56 Score=43.94 Aligned_cols=86 Identities=13% Similarity=-0.001 Sum_probs=57.2
Q ss_pred CceEEeccccCcHHHHHHHHCCCCEEEEc---ccccccCCCcccccc-chhHH-HHHHHHHhcCCCcEEecC--CCCCHH
Q psy1056 371 DMQVIGGNVLFGYQPRATLLNFIYQIEMI---KFIKKEYPDMQVIGR-NGTAV-YRVAEYASRRGVPVIADG--GVQSVG 443 (590)
Q Consensus 371 ~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~---~~~~~~~~~~~~~g~-~~~~l-~~~~~~~~~~~v~iia~G--Gi~~~~ 443 (590)
+-++++-++-+.-.|+.+.++|++++.++ +.... |+.+.|. +.+.+ ..+++.+...++|||+|+ |..++.
T Consensus 15 ~~~~~~p~~~Da~SAr~~e~aGf~a~~~ss~~~aas~---G~pD~~~lt~~e~~~~~~~I~~~~~lPv~~D~d~GyG~~~ 91 (275)
T d1s2wa_ 15 KDLEFIMEAHNGLSARIVQEAGFKGIWGSGLSVSAQL---GVRDSNEASWTQVVEVLEFMSDASDVPILLDADTGYGNFN 91 (275)
T ss_dssp SSCEEEEEECSHHHHHHHHHHTCSCEEECCHHHHHTC------------CHHHHHHHHHHHHTCSSCEEEECCSSCSSHH
T ss_pred CCCEEeecCcCHHHHHHHHHcCCCEEEhhHHHHHHHc---CCCCCCccchhhHHHHHHhhhcccCCceeEecccccccch
Confidence 45777779999999999999999999772 22222 3555566 65544 445667777789999966 887888
Q ss_pred HHHH----HHHcCCCEEEEC
Q psy1056 444 HVMK----ALALGASTAMMG 459 (590)
Q Consensus 444 di~k----alalGA~~v~~g 459 (590)
++.. ....||.++.+=
T Consensus 92 ~v~~tv~~~~~aGaagi~iE 111 (275)
T d1s2wa_ 92 NARRLVRKLEDRGVAGACLE 111 (275)
T ss_dssp HHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHhccceeEee
Confidence 7764 455799999543
|
| >d1ccwa_ c.23.6.1 (A:) Glutamate mutase, small subunit {Clostridium cochlearium [TaxId: 1494]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Cobalamin (vitamin B12)-binding domain family: Cobalamin (vitamin B12)-binding domain domain: Glutamate mutase, small subunit species: Clostridium cochlearium [TaxId: 1494]
Probab=90.11 E-value=0.39 Score=40.07 Aligned_cols=72 Identities=11% Similarity=0.027 Sum_probs=54.2
Q ss_pred eccchhHHHHHHHHHHcCCcEEEEecCCCch-hhHHHHHHHHHHhC-CCceEEeccccC------cHHHHHHHHCCCCEE
Q psy1056 325 IGTREADKNRLKLLSQAGVDVVILDSSQGNS-IYQIEMIKFIKKEY-PDMQVIGGNVLF------GYQPRATLLNFIYQI 396 (590)
Q Consensus 325 i~~~~~~~e~~~~li~~gad~i~V~~~~G~~-~~~l~~i~~i~~~~-~~vpvi~g~v~s------~~~a~~l~~~Gvd~i 396 (590)
+|...+..+.++.+.+.+++++.+....+.. ..+.+.++.+++.. .++|+++|+... ++.+.++.+.|+|.|
T Consensus 37 LG~~~p~e~iv~a~~~~~~d~v~lS~~~~~~~~~~~~~~~~l~~~~~~~i~iivGG~~~~~~~~~~~~~~~l~~~Gv~~i 116 (137)
T d1ccwa_ 37 IGVLSPQELFIKAAIETKADAILVSSLYGQGEIDCKGLRQKCDEAGLEGILLYVGGNIVVGKQHWPDVEKRFKDMGYDRV 116 (137)
T ss_dssp EEEEECHHHHHHHHHHHTCSEEEEEECSSTHHHHHTTHHHHHHHTTCTTCEEEEEESCSSSSCCHHHHHHHHHHTTCSEE
T ss_pred cccccCHHHHHHHHHhcCCCEEEEeeccccchHHHHHHHHHHHHhccCCCEEEEeCCcCCCccccHHHHHHHHHcCCCEE
Confidence 4444566788889999999999997766544 44556777787764 478999887662 557788899999998
|
| >d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Staphylococcus aureus [TaxId: 1280]
Probab=90.02 E-value=0.55 Score=41.90 Aligned_cols=65 Identities=17% Similarity=0.104 Sum_probs=47.2
Q ss_pred HHHHHHHHcCCcEEEEecCC------C-c-hhhHHHHHHHHHHhCCCceEEe-ccccCcHHHHHHHHCCCCEEEE
Q psy1056 333 NRLKLLSQAGVDVVILDSSQ------G-N-SIYQIEMIKFIKKEYPDMQVIG-GNVLFGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 333 e~~~~li~~gad~i~V~~~~------G-~-~~~~l~~i~~i~~~~~~vpvi~-g~v~s~~~a~~l~~~Gvd~i~v 398 (590)
+.+..+.+.|++.+.+.... + . ....++.+.++++.. ++|+++ |++.|.++++++.++|||++-+
T Consensus 130 ~~a~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~iPVia~GGI~t~~d~~~~~~~GAdgV~i 203 (222)
T d1y0ea_ 130 EEAKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSV-DAKVIAEGNVITPDMYKRVMDLGVHCSVV 203 (222)
T ss_dssp HHHHHHHHTTCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHHC-CSEEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHcCCCeEEEeccCCcccccCccchhhHHHHHHHHHhcC-CCcEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 44556778899988754321 1 1 122357788888877 799985 6777999999999999999954
|
| >d1tv5a1 c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Plasmodium falciparum [TaxId: 5833]
Probab=89.66 E-value=0.33 Score=48.35 Aligned_cols=94 Identities=10% Similarity=0.072 Sum_probs=61.7
Q ss_pred hHHHHHHHHHHcCCcEEEEecCC-------------C-c---h--hhHHHHHHHHHHhC-CCceEE-eccccCcHHHHHH
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQ-------------G-N---S--IYQIEMIKFIKKEY-PDMQVI-GGNVLFGYQPRAT 388 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~-------------G-~---~--~~~l~~i~~i~~~~-~~vpvi-~g~v~s~~~a~~l 388 (590)
...+.++...+.|++.+.+.... | . . .-.+..++++++.+ +++|+| +|+|.|.++|.+.
T Consensus 281 ~i~~i~~~~~~~g~dgii~~Nt~~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~v~~~~~~~ipIIGvGGI~s~~Da~e~ 360 (409)
T d1tv5a1 281 QKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLDALEK 360 (409)
T ss_dssp HHHHHHHHHHHTTCSEEEECCCBSCCCCCGGGTTCCSEEEEHHHHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHH
T ss_pred hhHHHHHHHHhccccceecccccccccccccccccCCcccchhHHHHHHHHHHHHHHHcCCCceEEEECCCCCHHHHHHH
Confidence 45668888889999988775421 1 0 0 11367788888877 468877 8999999999999
Q ss_pred HHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhc
Q psy1056 389 LLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASR 428 (590)
Q Consensus 389 ~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~ 428 (590)
+.|||+.| .++|... +.|.++......++.+++++
T Consensus 361 i~AGAs~V--Qv~T~li---~~Gp~~v~~I~~~L~~~l~~ 395 (409)
T d1tv5a1 361 IEAGASVC--QLYSCLV---FNGMKSAVQIKRELNHLLYQ 395 (409)
T ss_dssp HHTTEEEE--EESHHHH---HHGGGHHHHHHHHHHHHHHH
T ss_pred HHcCCCHH--hhhhHHH---hcChHHHHHHHHHHHHHHHH
Confidence 99999988 4444433 22322222223445555544
|
| >d1dxea_ c.1.12.5 (A:) 2-dehydro-3-deoxy-galactarate aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: HpcH/HpaI aldolase domain: 2-dehydro-3-deoxy-galactarate aldolase species: Escherichia coli [TaxId: 562]
Probab=89.53 E-value=2.2 Score=39.06 Aligned_cols=78 Identities=15% Similarity=0.082 Sum_probs=51.8
Q ss_pred CceEEeEeeccchhHHHHHHHHHHcCCcEEEEecCCCch--hhHHHHHHHHHHhCCCceEEe-ccccCcHHHHHHHHCCC
Q psy1056 317 NQLIVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNS--IYQIEMIKFIKKEYPDMQVIG-GNVLFGYQPRATLLNFI 393 (590)
Q Consensus 317 ~~l~v~a~i~~~~~~~e~~~~li~~gad~i~V~~~~G~~--~~~l~~i~~i~~~~~~vpvi~-g~v~s~~~a~~l~~~Gv 393 (590)
++..++..+... ....++.+...|.|++.+|.-||.. ..+...+..++.. +++.++ =.-.++..++++.++||
T Consensus 14 g~~~~G~~~~~~--~p~~~ei~a~~G~Dfv~iD~EHg~~~~~~~~~~i~a~~~~--g~~~~VRvp~~~~~~i~~~LD~Ga 89 (253)
T d1dxea_ 14 KQVQIGCWSALS--NPISTEVLGLAGFDWLVLDGEHAPNDISTFIPQLMALKGS--ASAPVVRVPTNEPVIIKRLLDIGF 89 (253)
T ss_dssp TCCEEEEEECSC--SHHHHHHHTTSCCSEEEEESSSSSCCHHHHHHHHHHTTTC--SSEEEEECSSSCHHHHHHHHHTTC
T ss_pred CCCEEEEEecCC--CHHHHHHHHcCCCCEEEEecccCCCChhHHHHHHHHHhcc--CCCceecCCCCCHHHHHHHHhcCc
Confidence 444566666433 3456667778999999999998743 3334444444333 344333 23358899999999999
Q ss_pred CEEEE
Q psy1056 394 YQIEM 398 (590)
Q Consensus 394 d~i~v 398 (590)
++|.+
T Consensus 90 ~GIiv 94 (253)
T d1dxea_ 90 YNFLI 94 (253)
T ss_dssp CEEEE
T ss_pred cEEEe
Confidence 99987
|
| >d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Plasmodium falciparum [TaxId: 5833]
Probab=89.02 E-value=0.9 Score=40.97 Aligned_cols=76 Identities=13% Similarity=0.136 Sum_probs=52.6
Q ss_pred eEeeccchhHHHHHHHHHHcCCcEEEEecC------CCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCE
Q psy1056 322 GAAIGTREADKNRLKLLSQAGVDVVILDSS------QGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQ 395 (590)
Q Consensus 322 ~a~i~~~~~~~e~~~~li~~gad~i~V~~~------~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~ 395 (590)
+.++.+..+.......+-...+|.+.+-+. |......++.++.+++.+|+..+.+-+..+.+++..+.++|||.
T Consensus 115 Gial~p~t~~~~~~~~l~~~~~d~vlim~V~pG~~GQ~f~~~~l~KI~~lr~~~~~~~I~VDGGIn~~~i~~l~~aGad~ 194 (221)
T d1tqxa_ 115 GISIKPKTDVQKLVPILDTNLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKYKNLNIQVDGGLNIETTEISASHGANI 194 (221)
T ss_dssp EEEECTTSCGGGGHHHHTTTCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCTTCEEEEESSCCHHHHHHHHHHTCCE
T ss_pred EEeeccccccccchhhcccccccEEEEEeecccccccccCcchhHHHHHHHHhcCCcceEEEcccCHHhHHHHHHcCCCE
Confidence 444444433333333332345777765442 22336678999999999988988888888999999999999999
Q ss_pred EE
Q psy1056 396 IE 397 (590)
Q Consensus 396 i~ 397 (590)
+.
T Consensus 195 iV 196 (221)
T d1tqxa_ 195 IV 196 (221)
T ss_dssp EE
T ss_pred EE
Confidence 93
|
| >d1to3a_ c.1.10.1 (A:) Putative aldolase YihT {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Putative aldolase YihT species: Salmonella typhimurium [TaxId: 90371]
Probab=88.88 E-value=1.1 Score=42.21 Aligned_cols=118 Identities=14% Similarity=0.102 Sum_probs=64.6
Q ss_pred HHHHHcCCcEEEEecC---CCchhhHHHHHHHHH---HhCCCceEEeccc------c--------CcHHHHHHHHCCCCE
Q psy1056 336 KLLSQAGVDVVILDSS---QGNSIYQIEMIKFIK---KEYPDMQVIGGNV------L--------FGYQPRATLLNFIYQ 395 (590)
Q Consensus 336 ~~li~~gad~i~V~~~---~G~~~~~l~~i~~i~---~~~~~vpvi~g~v------~--------s~~~a~~l~~~Gvd~ 395 (590)
+.+...|++++-+... ....+...+.++.+. ..+ ++|+++=-+ . -...++.+.+.|+|.
T Consensus 113 ~~a~~~GadaVk~lv~~~~d~~~e~~~~~~~~l~~~c~~~-glp~llE~l~~~~~~~~~~~~~~~i~~a~r~~~e~GaDi 191 (291)
T d1to3a_ 113 QAVKRDGAKALKLLVLWRSDEDAQQRLNMVKEFNELCHSN-GLLSIIEPVVRPPRCGDKFDREQAIIDAAKELGDSGADL 191 (291)
T ss_dssp HHHHHTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHTT-TCEEEEEEEECCCSSCSCCCHHHHHHHHHHHHTTSSCSE
T ss_pred HHHHhccCceEEEEEeeCCcccHHHHHHHHHHHHHHHHHc-CCcceEEEEecCCCcccccchHHHHHHHHHHHHhcCCcE
Confidence 3356778887755431 222222334444443 444 777774211 1 123456777899999
Q ss_pred EEEcccccccCCCccccccchhHHHHHHHHHhcCCCc-EEecCCCCCHHHHHH----HHHcCCCEEEECccc
Q psy1056 396 IEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVP-VIADGGVQSVGHVMK----ALALGASTAMMGSLL 462 (590)
Q Consensus 396 i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~-iia~GGi~~~~di~k----alalGA~~v~~g~~l 462 (590)
+++....... +.....+..+.+.....++| |+.+||. +..+..+ |+..||.++.+||.+
T Consensus 192 ~K~~~p~~~~-------~~~~~~~~~~~~~~~~~~~p~vvLs~G~-~~~~f~~~l~~A~~aGa~G~~~GR~i 255 (291)
T d1to3a_ 192 YKVEMPLYGK-------GARSDLLTASQRLNGHINMPWVILSSGV-DEKLFPRAVRVAMEAGASGFLAGRAV 255 (291)
T ss_dssp EEECCGGGGC-------SCHHHHHHHHHHHHHTCCSCEEECCTTS-CTTTHHHHHHHHHHTTCCEEEESHHH
T ss_pred EEEecCCCch-------hhhHHHHHHHHHHhhcCCCcEEEEeCCC-CHHHHHHHHHHHHHCCCeEEEeChhh
Confidence 9773222111 00111222233444445788 7778886 4555554 666899999999866
|
| >d1vr6a1 c.1.10.4 (A:1-338) 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I DAHP synthetase domain: 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) species: Thermotoga maritima [TaxId: 2336]
Probab=88.30 E-value=10 Score=35.92 Aligned_cols=174 Identities=17% Similarity=0.146 Sum_probs=110.2
Q ss_pred HHHHHHHHHhcCCCcceEEcCCCceEEEEeecccccc----------------cCCCCCCccc---------------CC
Q psy1056 269 LEEANVILEKSKKGKLPILNDKGELIALIARTDLKKS----------------RDYPDSSKDE---------------NN 317 (590)
Q Consensus 269 l~ea~~~m~~~~~~~lpVvd~~g~l~Giit~~dll~~----------------~~~~~~~~d~---------------~~ 317 (590)
++.+.+.+.+.++..-++...+..++|++-.+..+.. ..|+.++++. ++
T Consensus 14 i~~v~~~~~~~G~~~~~~~G~~~tiig~iGd~~~~~~~~~~~l~~Ve~v~~i~~pykl~SR~~~~~~t~I~v~gv~iG~~ 93 (338)
T d1vr6a1 14 IRKVVKLAESYNLKCHISKGQERTVIGIIGDDRYVVADKFESLDCVESVVRVLKPYKLVSREFHPEDTVIDLGDVKIGNG 93 (338)
T ss_dssp HHHHHHHHHHTTEEEEEEECSSCEEEEEEEEESSCCHHHHHTSTTEEEEEECSCSCCTTBTTTCCSCCCEECSSCEESTT
T ss_pred HHHHHHHHHHCCCceEEecCCCEEEEEEECCccccCHHHHhcCCcceEEEecCCchhhhhCccCCCCceEEeCCEEECCC
Confidence 4566777888999988888888899999865432221 1133332211 11
Q ss_pred ceEEeE--e-eccchhHHHHHHHHHHcCCcEEEEe------c---CCCchhhHHHHHHHHHHhCCCceEEeccccCcHHH
Q psy1056 318 QLIVGA--A-IGTREADKNRLKLLSQAGVDVVILD------S---SQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQP 385 (590)
Q Consensus 318 ~l~v~a--~-i~~~~~~~e~~~~li~~gad~i~V~------~---~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a 385 (590)
++.+.+ + +...+...+.++.+.+.|++.+.=- . -+|....-++.++.+++++ ++|++. +|.+.+++
T Consensus 94 ~l~lIAGPC~vES~e~~~~~A~~lke~g~~~~r~g~fKpRtsp~sf~g~g~~gL~~l~~~k~~~-glpvvT-dV~~~~~~ 171 (338)
T d1vr6a1 94 YFTIIAGPCSVEGREMLMETAHFLSELGVKVLRGGAYKPRTSPYSFQGLGEKGLEYLREAADKY-GMYVVT-EALGEDDL 171 (338)
T ss_dssp EEEEEEECSBCCCHHHHHHHHHHHHHTTCCEEECBSCCCCCSTTSCCCCTHHHHHHHHHHHHHH-TCEEEE-ECSSGGGH
T ss_pred ceEEEecCCCCCCHHHHHHHHHHHHHhCccccccceecccccccccccchHHHHHHHHHHHhhc-CceeEE-eccchhhh
Confidence 111111 1 1122445667888888888876411 1 1233344578899999998 899887 99999999
Q ss_pred HHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCC-CCCHHHHHHH----HHcCCCEEEEC
Q psy1056 386 RATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGG-VQSVGHVMKA----LALGASTAMMG 459 (590)
Q Consensus 386 ~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GG-i~~~~di~ka----lalGA~~v~~g 459 (590)
..+.+. +|.+.+.....+. . ++...+.+.+.||+.-=| ..++.|...| ++-|..-|++-
T Consensus 172 ~~~~e~-~DilQI~A~~~~n----------~----~LL~~~g~t~kpV~lKkG~~~s~~e~l~aae~i~~~Gn~~vilc 235 (338)
T d1vr6a1 172 PKVAEY-ADIIQIGARNAQN----------F----RLLSKAGSYNKPVLLKRGFMNTIEEFLLSAEYIANSGNTKIILC 235 (338)
T ss_dssp HHHHHH-CSEEEECGGGTTC----------H----HHHHHHHTTCSCEEEECCTTCCHHHHHHHHHHHHHTTCCCEEEE
T ss_pred hhhhce-eeeEEechhhccC----------H----HHHHHhhccCCcEEecCccccchhhhhhhHHHHHhcCCccceee
Confidence 888876 8888664333333 1 222333356789999777 5788887655 56788888664
|
| >d1gqna_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Type I 3-dehydroquinate dehydratase species: Salmonella typhi [TaxId: 90370]
Probab=88.16 E-value=5.2 Score=36.35 Aligned_cols=115 Identities=18% Similarity=0.177 Sum_probs=69.8
Q ss_pred hHHHHHHHHHHcCCcEEEEec--CCC--chhhHHHHHHHHHHhCCCceEEe-----cccc----CcHH----HHHHHHCC
Q psy1056 330 ADKNRLKLLSQAGVDVVILDS--SQG--NSIYQIEMIKFIKKEYPDMQVIG-----GNVL----FGYQ----PRATLLNF 392 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~--~~G--~~~~~l~~i~~i~~~~~~vpvi~-----g~v~----s~~~----a~~l~~~G 392 (590)
+..+.+......|+|++.+-. -+. +...+.+.++.+++..+++|+++ .+.+ +.+. .+.++++|
T Consensus 29 ~~~~~~~~~~~~~aD~vE~RlD~l~~~~~~~~l~~~~~~lr~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~ 108 (252)
T d1gqna_ 29 SVKAEALAYREATFDILEWRVDHFMDIASTQSVLTAARVIRDAMPDIPLLFTFRSAKEGGEQTITTQHYLTLNRAAIDSG 108 (252)
T ss_dssp HHHHHHHHHTTSCCSEEEEEGGGCSCTTCHHHHHHHHHHHHHHCTTSCEEEECCBGGGTCSBCCCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhhcCCCEEEEEEccccccCCHHHHHHHHHHHHHhcCCCCEEEEEechhhCCCCCCCHHHHHHHHHHHHHcC
Confidence 344556666677999998754 222 33567788899999887899985 2222 2221 24556678
Q ss_pred -CCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecC----CCCCHHHH----HHHHHcCCCEE
Q psy1056 393 -IYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADG----GVQSVGHV----MKALALGASTA 456 (590)
Q Consensus 393 -vd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~G----Gi~~~~di----~kalalGA~~v 456 (590)
+|+|||....... .+..+.+.++..++.+|.|- +-.+..++ .++..+|||.+
T Consensus 109 ~~d~iDiEl~~~~~------------~~~~li~~a~~~~~~vI~S~Hdf~~TP~~~~l~~~~~~m~~~gaDiv 169 (252)
T d1gqna_ 109 LVDMIDLELFTGDA------------DVKATVDYAHAHNVYVVMSNHDFHQTPSAEEMVSRLRKMQALGADIP 169 (252)
T ss_dssp CCSEEEEEGGGCHH------------HHHHHHHHHHHTTCEEEEEEEESSCCCCHHHHHHHHHHHHHTTCSEE
T ss_pred CCceEeccccccHH------------HHHHHHHHhhcCCCeEEEEecCCCCCCCHHHHHHHHHHHHHhCCCeE
Confidence 8999884332211 12234444445578888864 33333444 35667899999
|
| >d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Streptococcus pyogenes [TaxId: 1314]
Probab=87.80 E-value=0.43 Score=42.98 Aligned_cols=66 Identities=15% Similarity=-0.053 Sum_probs=44.5
Q ss_pred HHHHHHHHHcCCcEEEEecCCCch-----hhHHHHHHHHHHhCCCceEEe-ccccCcHHHHHHHHCCCCEEEE
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGNS-----IYQIEMIKFIKKEYPDMQVIG-GNVLFGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~~-----~~~l~~i~~i~~~~~~vpvi~-g~v~s~~~a~~l~~~Gvd~i~v 398 (590)
.+.+....++|++++.++...... ......+...+... ++|+++ |++.|++++.++.++|||+|-|
T Consensus 140 ~~~a~~a~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ipvia~GGI~t~~d~~~al~~GAd~V~v 211 (230)
T d1yxya1 140 FDEGLVAHQAGIDFVGTTLSGYTPYSRQEAGPDVALIEALCKA-GIAVIAEGKIHSPEEAKKINDLGVAGIVV 211 (230)
T ss_dssp HHHHHHHHHTTCSEEECTTTTSSTTSCCSSSCCHHHHHHHHHT-TCCEEEESCCCSHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHHhcCCCEEEeecccccccccccchHHHHHHHHHhcC-CCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 455677789999999876532111 11112233444444 789885 6666999999999999999954
|
| >d2czda1 c.1.2.3 (A:1-206) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Pyrococcus horikoshii [TaxId: 53953]
Probab=87.74 E-value=1.8 Score=38.27 Aligned_cols=112 Identities=13% Similarity=0.123 Sum_probs=61.7
Q ss_pred HHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEecccc-----------CcHHHHHHHHCCCCEEEEcc
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVL-----------FGYQPRATLLNFIYQIEMIK 400 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~-----------s~~~a~~l~~~Gvd~i~v~~ 400 (590)
...++.+.+.|++.+.++...|. +.++..++.. ...++-... .....+.+.++|..++.
T Consensus 68 ~~~~~~~~~~gad~~Tvh~~~g~-----~~i~~~~~~~--~~~~~~~~s~~~~~~~~~~~~~~~~~~a~~~~~~g~~--- 137 (206)
T d2czda1 68 RLIARKVFGAGADYVIVHTFVGR-----DSVMAVKELG--EIIMVVEMSHPGALEFINPLTDRFIEVANEIEPFGVI--- 137 (206)
T ss_dssp HHHHHHHHHTTCSEEEEESTTCH-----HHHHHHHTTS--EEEEECCCCSGGGGTTTGGGHHHHHHHHHHHCCSEEE---
T ss_pred hheehhhccccccEEEeeecccH-----HHHHHhhhcc--cceEEEeccCCcccccccHHHHHHHHHHHhccccccc---
Confidence 34567778899999999887663 3455554432 222221111 11112223345555551
Q ss_pred cccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCC-CHHHHHHHHHcCCCEEEECccccCC
Q psy1056 401 FIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQ-SVGHVMKALALGASTAMMGSLLAGT 465 (590)
Q Consensus 401 ~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~-~~~di~kalalGA~~v~~g~~l~~~ 465 (590)
+... .+..+..+++.+. .+..+++.| |+ .+.+..+|+..|||.+++||++..+
T Consensus 138 ~~~~----------~~~~~~~~r~~~~-~~~~i~~pG-I~~~~~~~~~ai~~Gad~iVvGR~I~~a 191 (206)
T d2czda1 138 APGT----------RPERIGYIRDRLK-EGIKILAPG-IGAQGGKAKDAVKAGADYIIVGRAIYNA 191 (206)
T ss_dssp CCCS----------STHHHHHHHHHSC-TTCEEEECC-CCSSTTHHHHHHHHTCSEEEECHHHHTS
T ss_pred cccc----------Cchhhhhhhhhhc-ccceEECCC-ccccCCCHHHHHHhCCCEEEEChhhccC
Confidence 1111 2333445554432 245555554 43 3457778889999999999999644
|
| >d7reqb2 c.23.6.1 (B:476-638) Methylmalonyl-CoA mutase beta subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Cobalamin (vitamin B12)-binding domain family: Cobalamin (vitamin B12)-binding domain domain: Methylmalonyl-CoA mutase beta subunit, C-terminal domain species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]
Probab=87.37 E-value=0.8 Score=39.24 Aligned_cols=66 Identities=17% Similarity=0.057 Sum_probs=52.8
Q ss_pred HHHHHHHHHHcCCcEEEEecCCC-chhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEE
Q psy1056 331 DKNRLKLLSQAGVDVVILDSSQG-NSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQI 396 (590)
Q Consensus 331 ~~e~~~~li~~gad~i~V~~~~G-~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i 396 (590)
..+.++...+.+++++++..+.. +.....+.++.+++.-.+..+++|.....++...+.++|+|.+
T Consensus 75 ~~e~v~aa~~~~a~vvvicssd~~y~~~~~~~~~aLk~ag~~~~vlaGg~~~~~d~~~l~~aGVd~~ 141 (163)
T d7reqb2 75 TAEIVEAFKKSGAQVADLCSSAKVYAQQGLEVAKALKAAGAKALYLSGAFKEFGDDAAEAEKLIDGR 141 (163)
T ss_dssp HHHHHHHHHHHTCSEEEEECCHHHHHHHHHHHHHHHHHTTCSEEEEESCGGGGGGGHHHHHHHCCEE
T ss_pred cHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHHHHhcccceeEEEecCCCcccHHHHHhCCCCeE
Confidence 34667888899999999877653 3345568889999876677888888888888889999999988
|
| >d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=87.37 E-value=1.4 Score=39.65 Aligned_cols=57 Identities=14% Similarity=0.088 Sum_probs=45.1
Q ss_pred CCcEEEEecCC------CchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEE
Q psy1056 342 GVDVVILDSSQ------GNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 342 gad~i~V~~~~------G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v 398 (590)
.++.+.+-+.+ ......++.++.+++.+|+.++.+-+..+.+++..+.++|||.+.+
T Consensus 133 ~~d~vlim~v~PG~~GQ~f~~~~l~kI~~l~~~~~~~~I~VDGGIn~~~i~~l~~aGad~~V~ 195 (220)
T d1h1ya_ 133 PVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEVDGGLGPSTIDVAASAGANCIVA 195 (220)
T ss_dssp CCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCTTSEEEEESSCSTTTHHHHHHHTCCEEEE
T ss_pred ccceEEEEecCCCCcccccchhhhHHHHHHHhcCCCceEEEEecCCHHHHHHHHHCCCCEEEE
Confidence 35766554432 2335678999999999999999998888999999999999999933
|
| >d1tzza1 c.1.11.2 (A:1146-1392) Hypothetical protein Bll6730 {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein Bll6730 species: Bradyrhizobium japonicum [TaxId: 375]
Probab=86.55 E-value=10 Score=33.93 Aligned_cols=118 Identities=12% Similarity=-0.076 Sum_probs=80.1
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhC-CCceEEecccc--CcHHHHHHH----HCCCCEEEEccc
Q psy1056 329 EADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEY-PDMQVIGGNVL--FGYQPRATL----LNFIYQIEMIKF 401 (590)
Q Consensus 329 ~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~-~~vpvi~g~v~--s~~~a~~l~----~~Gvd~i~v~~~ 401 (590)
+...+.++.+++.|...+-+.....+...-++.++.+++.+ +++.+++---. +.++|.++. +.+..++ +
T Consensus 22 ~~~~~~~~~~~~~Gf~~~Kikvg~~~~~~di~~v~~vr~~~g~~~~l~vDan~~~~~~~Ai~~~~~l~~~~i~wi----E 97 (247)
T d1tzza1 22 SMLRGEMRGYLDRGYNVVKMKIGGAPIEEDRMRIEAVLEEIGKDAQLAVDANGRFNLETGIAYAKMLRDYPLFWY----E 97 (247)
T ss_dssp HHHHHHHHHHHTTTCSEEEEECSSSCHHHHHHHHHHHHHHHTTTCEEEEECTTCCCHHHHHHHHHHHTTSCCSEE----E
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHhccCCceEEecccccccchhHHHHHhhcchhhhhhh----c
Confidence 34556788889999999998776555666688899998876 67777753222 666665544 4666665 2
Q ss_pred ccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCC-----CEEEECc
Q psy1056 402 IKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGA-----STAMMGS 460 (590)
Q Consensus 402 ~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA-----~~v~~g~ 460 (590)
-- + ....+...++.....++||.++-.+.+..+....+..|| |.++...
T Consensus 98 eP-----~-----~~~d~~~~~~l~~~~~ipia~gE~~~~~~~~~~~i~~~a~~~~~Di~~~d~ 151 (247)
T d1tzza1 98 EV-----G-----DPLDYALQAALAEFYPGPMATGENLFSHQDARNLLRYGGMRPDRDWLQFDC 151 (247)
T ss_dssp CC-----S-----CTTCHHHHHHHTTTCCSCEEECTTCCSHHHHHHHHHHSCCCTTTCEECCCT
T ss_pred cc-----c-----ccccchhhhhhhhccccccccchhhhhhHHHHHHHHccCCcCcceeEeecc
Confidence 11 1 111233445555556799999889999999999999997 5675543
|
| >d1d3ga_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.50 E-value=0.78 Score=44.75 Aligned_cols=95 Identities=11% Similarity=0.099 Sum_probs=61.4
Q ss_pred hHHHHHHHHHHcCCcEEEEecCC-------------------Cch--hhHHHHHHHHHHhCC-CceEE-eccccCcHHHH
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQ-------------------GNS--IYQIEMIKFIKKEYP-DMQVI-GGNVLFGYQPR 386 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~-------------------G~~--~~~l~~i~~i~~~~~-~vpvi-~g~v~s~~~a~ 386 (590)
+..+.++.+.++|++.+.+.... |.. .-.+..++.+++..+ ++|+| +|+|.+.++|.
T Consensus 235 ~i~~~a~~~~~~g~~gi~~~nt~~~~~~~~~~~~~~~~gg~sG~~~~~i~l~~v~~v~~~~~~~ipIig~GGI~s~~Da~ 314 (367)
T d1d3ga_ 235 DKEDIASVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQGRVPIIGVGGVSSGQDAL 314 (367)
T ss_dssp HHHHHHHHHHHHTCCEEEECCCBSCCCTTCCCTTTTSSSEEEEGGGHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHH
T ss_pred hhhhhHHHHHhhhhheeecccccccccccccccccccccccccccchhhhHHHHHHHHHHhCCCccEEEECCCCCHHHHH
Confidence 35567888888999987764210 111 113567777777653 68887 78999999999
Q ss_pred HHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcC
Q psy1056 387 ATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRR 429 (590)
Q Consensus 387 ~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~ 429 (590)
+.+.+||+.+ .+++... +.|.++....+.++.+++.+.
T Consensus 315 e~i~aGAs~V--Qi~Ta~~---~~Gp~ii~~I~~~L~~~l~~~ 352 (367)
T d1d3ga_ 315 EKIRAGASLV--QLYTALT---FWGPPVVGKVKRELEALLKEQ 352 (367)
T ss_dssp HHHHHTCSEE--EESHHHH---HHCTHHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCCHH--HhhHHHH---hcCcHHHHHHHHHHHHHHHHc
Confidence 9999999988 4444433 323332333445566666554
|
| >d1dxea_ c.1.12.5 (A:) 2-dehydro-3-deoxy-galactarate aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: HpcH/HpaI aldolase domain: 2-dehydro-3-deoxy-galactarate aldolase species: Escherichia coli [TaxId: 562]
Probab=85.12 E-value=1.1 Score=41.16 Aligned_cols=72 Identities=4% Similarity=-0.136 Sum_probs=50.1
Q ss_pred cccCcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEE
Q psy1056 378 NVLFGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAM 457 (590)
Q Consensus 378 ~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~ 457 (590)
...++..++.+..+|.|++.+..+-+.- ....+..+..++...+++.+.==--.++..+.++|.+||++++
T Consensus 23 ~~~~p~~~ei~a~~G~Dfv~iD~EHg~~---------~~~~~~~~i~a~~~~g~~~~VRvp~~~~~~i~~~LD~Ga~GIi 93 (253)
T d1dxea_ 23 ALSNPISTEVLGLAGFDWLVLDGEHAPN---------DISTFIPQLMALKGSASAPVVRVPTNEPVIIKRLLDIGFYNFL 93 (253)
T ss_dssp CSCSHHHHHHHTTSCCSEEEEESSSSSC---------CHHHHHHHHHHTTTCSSEEEEECSSSCHHHHHHHHHTTCCEEE
T ss_pred cCCCHHHHHHHHcCCCCEEEEecccCCC---------ChhHHHHHHHHHhccCCCceecCCCCCHHHHHHHHhcCccEEE
Confidence 4558999999999999999664332211 4444555555666666655551122589999999999999996
Q ss_pred E
Q psy1056 458 M 458 (590)
Q Consensus 458 ~ 458 (590)
+
T Consensus 94 v 94 (253)
T d1dxea_ 94 I 94 (253)
T ss_dssp E
T ss_pred e
Confidence 5
|
| >d1wv2a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: ThiG-like family: ThiG-like domain: Thiazole biosynthesis protein ThiG species: Pseudomonas aeruginosa [TaxId: 287]
Probab=85.05 E-value=2.2 Score=38.63 Aligned_cols=65 Identities=14% Similarity=0.028 Sum_probs=46.6
Q ss_pred HHHHHHHHcCCcEEEEecC-CCchhhH--HHHHHHHHHhCCCceEEe-ccccCcHHHHHHHHCCCCEEEE
Q psy1056 333 NRLKLLSQAGVDVVILDSS-QGNSIYQ--IEMIKFIKKEYPDMQVIG-GNVLFGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 333 e~~~~li~~gad~i~V~~~-~G~~~~~--l~~i~~i~~~~~~vpvi~-g~v~s~~~a~~l~~~Gvd~i~v 398 (590)
-.++.+.+.|+..+.-..+ -|...++ ...++.++++. ++|+++ .+++++.+|.++++.|+|++-|
T Consensus 139 v~ak~le~~Gc~~vMplgsPIGsg~Gi~n~~~l~~i~~~~-~vpvivdAGIg~psdaa~AMElG~dgVLv 207 (243)
T d1wv2a_ 139 IIARQLAEIGCIAVMPLAGLIGSGLGICNPYNLRIILEEA-KVPVLVDAGVGTASDAAIAMELGCEAVLM 207 (243)
T ss_dssp HHHHHHHHSCCSEEEECSSSTTCCCCCSCHHHHHHHHHHC-SSCBEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred HHHhHHHHcCceeeeecccccccccccccHHHHHhccccC-CcceEeecccCCHHHHHHHHHccCCEEEe
Confidence 4567788899988754332 2332332 45677777764 899886 5778999999999999999944
|
| >d1o4ua1 c.1.17.1 (A:104-273) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=84.99 E-value=0.71 Score=39.86 Aligned_cols=65 Identities=17% Similarity=0.089 Sum_probs=50.9
Q ss_pred HHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEE
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v 398 (590)
.+.+...++.|+|++.+|.- .++.+-+..+.++...|.+.+-+-+..+.+.+....+.|+|+|.+
T Consensus 88 ~~e~~~a~~~g~d~i~LDn~--~pe~~k~~~~~lk~~~~~i~lEaSGGI~~~ni~~~a~~GVD~Is~ 152 (170)
T d1o4ua1 88 LEDALRAVEAGADIVMLDNL--SPEEVKDISRRIKDINPNVIVEVSGGITEENVSLYDFETVDVISS 152 (170)
T ss_dssp HHHHHHHHHTTCSEEEEESC--CHHHHHHHHHHHHHHCTTSEEEEEECCCTTTGGGGCCTTCCEEEE
T ss_pred HHHHHHHHhcCccEEEEcCc--ChhhHhHHHHHHHhhCCcEEEEEECCCCHHHHHHHHHcCCCEEEc
Confidence 46667788999999998753 344555667778887777777777777899999999999999966
|
| >d1vlia2 c.1.10.6 (A:2-296) Spore coat polysaccharide biosynthesis protein SpsE, N-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: NeuB-like domain: Spore coat polysaccharide biosynthesis protein SpsE, N-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=84.83 E-value=7.8 Score=35.96 Aligned_cols=113 Identities=13% Similarity=0.135 Sum_probs=70.6
Q ss_pred EEeEeeccc-----hhHHHHHHHHHHcCCcEEEEecCCC------------------c-----------h-hhHHHHHHH
Q psy1056 320 IVGAAIGTR-----EADKNRLKLLSQAGVDVVILDSSQG------------------N-----------S-IYQIEMIKF 364 (590)
Q Consensus 320 ~v~a~i~~~-----~~~~e~~~~li~~gad~i~V~~~~G------------------~-----------~-~~~l~~i~~ 364 (590)
++.+.++.. ....+.++...++|||++-+..-.. . + ..+....+.
T Consensus 17 ~IIAEig~nH~G~~~~ak~lI~~A~~sGAdaVKFQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kk~els~~~~~~l~~~ 96 (295)
T d1vlia2 17 FIIAEAGINHDGKLDQAFALIDAAAEAGADAVKFQMFQADRMYQKDPGLYKTAAGKDVSIFSLVQSMEMPAEWILPLLDY 96 (295)
T ss_dssp EEEEEEETTTTTCHHHHHHHHHHHHHHTCSEEEECCBCGGGGTSCCC---------CCCHHHHGGGBSSCGGGHHHHHHH
T ss_pred EEEEEecCCcCccHHHHHHHHHHHHHcCCCEEEEeeecchhceecccccccccCcccccccccchheecCHHHhhhHHHH
Confidence 455556543 2334466677788999987764210 0 0 112333333
Q ss_pred HHHhCCCceEEeccccCcHHHHHHHHCCCCEEEE-cccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHH
Q psy1056 365 IKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEM-IKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVG 443 (590)
Q Consensus 365 i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v-~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~ 443 (590)
.++. +++.++ .+.+.+.+..+.+.|++++++ |-+.+.. ..+. .+...+.|+|.+-|..+-.
T Consensus 97 ~k~~--gi~~~~-s~fd~~s~~~l~~l~~~~iKIaS~d~~n~--------------~Li~-~i~k~~kpviistG~~~~~ 158 (295)
T d1vlia2 97 CREK--QVIFLS-TVCDEGSADLLQSTSPSAFKIASYEINHL--------------PLLK-YVARLNRPMIFSTAGAEIS 158 (295)
T ss_dssp HHHT--TCEEEC-BCCSHHHHHHHHTTCCSCEEECGGGTTCH--------------HHHH-HHHTTCSCEEEECTTCCHH
T ss_pred hhhc--ccceee-ecccceeeeeecccCcceeEecccccccH--------------HHHH-HHHhcCCchheechhhhhh
Confidence 3333 566654 788999999999999999987 3322211 2233 3345579999998989999
Q ss_pred HHHHHHH
Q psy1056 444 HVMKALA 450 (590)
Q Consensus 444 di~kala 450 (590)
++.+++.
T Consensus 159 ei~~~~~ 165 (295)
T d1vlia2 159 DVHEAWR 165 (295)
T ss_dssp HHHHHHH
T ss_pred hHHHHHh
Confidence 9987774
|
| >d1m5wa_ c.1.24.1 (A:) Pyridoxine 5'-phosphate synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Pyridoxine 5'-phosphate synthase family: Pyridoxine 5'-phosphate synthase domain: Pyridoxine 5'-phosphate synthase species: Escherichia coli [TaxId: 562]
Probab=84.81 E-value=10 Score=34.07 Aligned_cols=125 Identities=10% Similarity=0.039 Sum_probs=80.4
Q ss_pred chhHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEEcccccccCC
Q psy1056 328 READKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEMIKFIKKEYP 407 (590)
Q Consensus 328 ~~~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~~~~~~~~~ 407 (590)
.++..+.+....++||+.|.++..+..+.-.-+-+..+++.. +.|+=+-.-.+.+-...+.+.-.+.+-+-++...+..
T Consensus 23 ~Pd~~~~a~~~~~~GadgITvH~R~DrRHI~~~Dv~~l~~~~-~~~lNlE~a~~~e~i~ia~~~kP~qvtLVPe~r~elT 101 (242)
T d1m5wa_ 23 YPDPVQAAFIAEQAGADGITVHLREDRRHITDRDVRILRQTL-DTRMNLEMAVTEEMLAIAVETKPHFCCLVPEKRQEVT 101 (242)
T ss_dssp CSCHHHHHHHHHTTTCSEEEEECCTTCSSSCHHHHHHHHHHC-SSEEEEEECSSHHHHHHHHHHCCSEEEECCCCSSCSS
T ss_pred CCCHHHHHHHHHHcCCCeEEeCCCCCccccchHHHHHHHHHh-hcccccccccchhHHHHHHHhccceEEEeecCccccC
Confidence 356788899999999999999987755533345566777776 5666553344666666677777787754222222200
Q ss_pred Ccccccc--chhHHHHHHHHHhcCC--CcEEecCCCCCHHHHHHHHHcCCCEE
Q psy1056 408 DMQVIGR--NGTAVYRVAEYASRRG--VPVIADGGVQSVGHVMKALALGASTA 456 (590)
Q Consensus 408 ~~~~~g~--~~~~l~~~~~~~~~~~--v~iia~GGi~~~~di~kalalGA~~v 456 (590)
.-.||-. ....|..+.+.+++.+ +-+..|- +..++-.|..+|||.|
T Consensus 102 TegGld~~~~~~~L~~~i~~l~~~girvSLFiDp---d~~~i~~a~~lGad~I 151 (242)
T d1m5wa_ 102 TEGGLDVAGQRDKMRDACKRLADAGIQVSLFIDA---DEEQIKAAAEVGAPFI 151 (242)
T ss_dssp CCSCCCSGGGHHHHHHHHHHHHHTTCEEEEEECS---CHHHHHHHHHTTCSEE
T ss_pred cCCceeehhhHHHHHHHHHHHHhcCCeEEEEecc---chhhHHHHhhcCccee
Confidence 0124443 2334555555555555 4566663 6888999999999999
|
| >d2zdra2 c.1.10.6 (A:2-281) Capsule biosynthesis protein SiaC, N-terminal domain {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: NeuB-like domain: Capsule biosynthesis protein SiaC, N-terminal domain species: Neisseria meningitidis [TaxId: 487]
Probab=84.74 E-value=7.6 Score=35.74 Aligned_cols=122 Identities=16% Similarity=0.180 Sum_probs=76.2
Q ss_pred eEEeEeeccc-----hhHHHHHHHHHHcCCcEEEEecCC----------------Cc-h------------hhHHHHHHH
Q psy1056 319 LIVGAAIGTR-----EADKNRLKLLSQAGVDVVILDSSQ----------------GN-S------------IYQIEMIKF 364 (590)
Q Consensus 319 l~v~a~i~~~-----~~~~e~~~~li~~gad~i~V~~~~----------------G~-~------------~~~l~~i~~ 364 (590)
.++.+.++.. ....+.++...++|++++-++... .. . ..+.+..+.
T Consensus 19 ~~iIAEig~NH~Gd~~~a~~lI~~a~~sGadaVKfQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~l~~~ 98 (280)
T d2zdra2 19 PLIICEIGINHEGSLKTAFEMVDAAYNAGAEVVKHQTHIVEDEMSDEAKQVIPGNADVSIYEIMERCALNEEDEIKLKEY 98 (280)
T ss_dssp CEEEEEEETTTTTCHHHHHHHHHHHHHHTCSEEEEEECCHHHHCCGGGGGCCCTTCSSCHHHHHHHHCCCHHHHHHHHHH
T ss_pred cEEEEEeccccCCCHHHHHHHHHHHHHhCCCEEEecCcccchhcccccccccccccccccccccccccccchhhHHHHHH
Confidence 3455666543 233446666777899998776421 00 0 111222333
Q ss_pred HHHhCCCceEEeccccCcHHHHHHHHCCCCEEEE-cccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHH
Q psy1056 365 IKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEM-IKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVG 443 (590)
Q Consensus 365 i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v-~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~ 443 (590)
.+.. +++.++ .+.+.+.+..+.+.|++++.+ |...+. +..+... ...+.|||.|-|..+-.
T Consensus 99 ~k~~--~i~~~~-s~fd~~s~~~~~~~~~~~~KIaS~d~~n--------------~~Li~~i-~k~~kpiiiStG~s~~~ 160 (280)
T d2zdra2 99 VESK--GMIFIS-TPFSRAAALRLQRMDIPAYKIGSGECNN--------------YPLIKLV-ASFGKPIILSTGMNSIE 160 (280)
T ss_dssp HHHT--TCEEEE-EECSHHHHHHHHHHTCSCEEECGGGTTC--------------HHHHHHH-HTTCSCEEEECTTCCHH
T ss_pred HHhc--CCcccc-ccchhhcccccccccccceeccchhccc--------------cHhhhhh-hhccCceeecccccchh
Confidence 3333 565554 677888999999999999987 322221 1223333 35579999999999999
Q ss_pred HHHHHHH----cCCCEEEE
Q psy1056 444 HVMKALA----LGASTAMM 458 (590)
Q Consensus 444 di~kala----lGA~~v~~ 458 (590)
||.+|+. .|.+.+.+
T Consensus 161 EI~~av~~~~~~~~~~~ll 179 (280)
T d2zdra2 161 SIKKSVEIIREAGVPYALL 179 (280)
T ss_dssp HHHHHHHHHHHHTCCEEEE
T ss_pred HhhhhhhhhhhccccceEE
Confidence 9999988 37777643
|
| >d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Maize (Zea mays) [TaxId: 4577]
Probab=84.67 E-value=3.4 Score=37.93 Aligned_cols=66 Identities=18% Similarity=0.074 Sum_probs=47.5
Q ss_pred HHHHHHHHHcCCcEEEEecCC---C----chhhHHHHHHHHHHhCCCceEEecccc-CcHHHHHHHHCCCCEEEE
Q psy1056 332 KNRLKLLSQAGVDVVILDSSQ---G----NSIYQIEMIKFIKKEYPDMQVIGGNVL-FGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 332 ~e~~~~li~~gad~i~V~~~~---G----~~~~~l~~i~~i~~~~~~vpvi~g~v~-s~~~a~~l~~~Gvd~i~v 398 (590)
.++++.+.+..-.++-..+.. | ....+.+.++.+|+.. +.|+.+|-.. ++++++++.+.|+|++.|
T Consensus 155 ~~Ri~~i~~~a~gFvY~vs~~GvTG~~~~~~~~~~~~i~~ik~~t-~~Pi~vGFGI~~~e~v~~~~~~gaDGvIV 228 (261)
T d1rd5a_ 155 EDRMKEITKASEGFVYLVSVNGVTGPRANVNPRVESLIQEVKKVT-NKPVAVGFGISKPEHVKQIAQWGADGVII 228 (261)
T ss_dssp HHHHHHHHHHCCSCEEEECSSCCBCTTSCBCTHHHHHHHHHHHHC-SSCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred hhHHHHHHhcCcchhhhhhccCcccccccchhHHHHHHHHhhhcc-CCCeEEEcCCCCHHHHHHHHhcCCCEEEE
Confidence 456666666544554433322 2 2245678899999887 8999998555 999999999999999977
|
| >d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermus thermophilus [TaxId: 274]
Probab=83.70 E-value=1.5 Score=40.26 Aligned_cols=72 Identities=17% Similarity=0.036 Sum_probs=49.9
Q ss_pred CcHHHHHHHHCCCCEEEEcccccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCCCEEEECc
Q psy1056 381 FGYQPRATLLNFIYQIEMIKFIKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGASTAMMGS 460 (590)
Q Consensus 381 s~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA~~v~~g~ 460 (590)
-.+.|+...+.||++|.| -|... .|.| ...-+..++ ...++||+.=--|-++.+|..|.++|||+|.+-.
T Consensus 67 p~~~A~~y~~~GA~aiSV--LTe~~--~F~G---s~~dl~~v~---~~~~iPvLrKDFIid~~QI~ea~~~GADaVLLIa 136 (254)
T d1vc4a_ 67 PVEAALAYARGGARAVSV--LTEPH--RFGG---SLLDLKRVR---EAVDLPLLRKDFVVDPFMLEEARAFGASAALLIV 136 (254)
T ss_dssp HHHHHHHHHHTTCSEEEE--ECCCS--SSCC---CHHHHHHHH---HHCCSCEEEESCCCSHHHHHHHHHTTCSEEEEEH
T ss_pred HHHHHHHHHhcCCceEEE--EcCcc--cccc---cHHHHHHHH---HHcCCCcccCCccccHHHHHHHHhccchHHHHHH
Confidence 356788888999999955 22222 0222 333344443 3457999998899999999999999999995443
Q ss_pred cc
Q psy1056 461 LL 462 (590)
Q Consensus 461 ~l 462 (590)
.+
T Consensus 137 al 138 (254)
T d1vc4a_ 137 AL 138 (254)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >d1km4a_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=83.56 E-value=2.4 Score=37.59 Aligned_cols=115 Identities=12% Similarity=0.035 Sum_probs=61.9
Q ss_pred HHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccC-------cHH----HHHHHHCCCCEEEEccc
Q psy1056 333 NRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLF-------GYQ----PRATLLNFIYQIEMIKF 401 (590)
Q Consensus 333 e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s-------~~~----a~~l~~~Gvd~i~v~~~ 401 (590)
..++.+.+.|+|.+.|+...|.. .+...++...+.- ...+++....+ ... ++...++|++++.+..+
T Consensus 72 ~~~~~~~~~gad~~TVh~~~g~~-~i~~~~~~a~~~~-~~~~~l~~~s~~~~~~~~~~~~~~~~~~~~~~g~~g~v~~~~ 149 (212)
T d1km4a_ 72 KICRATFKAGADAIIVHGFPGAD-SVRACLNVAEEMG-REVFLLTEMSHPGAEMFIQGAADEIARMGVDLGVKNYVGPST 149 (212)
T ss_dssp HHHHHHHHTTCSEEEEESTTCHH-HHHHHHHHHHHHT-CEEEEECSCSSGGGGTTHHHHHHHHHHHHHHHTCCEEECCTT
T ss_pred HhHhhhccccccEEEEeccCChH-HHHHHHHHHHhcC-CccccchhhcchhhhhhhhhHHHHHHHHHHHhCCcccccccc
Confidence 45677788999999999877632 2222233333332 22222211111 111 23334567666611111
Q ss_pred ccccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHH-HHHHHHHcCCCEEEECccccCC
Q psy1056 402 IKKEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVG-HVMKALALGASTAMMGSLLAGT 465 (590)
Q Consensus 402 ~~~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~-di~kalalGA~~v~~g~~l~~~ 465 (590)
.+.-+..+++.+.. -.++..+||+-.. +.-.++ .|||.+.+||++..+
T Consensus 150 -------------~~~~i~~ir~~~~~--~~~~vtpGI~~~g~~~~d~~-~~ad~iIvGR~I~~a 198 (212)
T d1km4a_ 150 -------------RPERLSRLREIIGQ--DSFLISPGVGAQGGDPGETL-RFADAIIVGRSIYLA 198 (212)
T ss_dssp -------------CHHHHHHHHHHHCS--SSEEEECCBSTTSBCHHHHT-TTCSEEEECHHHHTS
T ss_pred -------------CHHHHhhhhhccCC--ceeEEcCccccCCCCHHHHH-hhCCEEEECchhccC
Confidence 33445566666532 4567789997433 333343 589999999999644
|
| >d1muma_ c.1.12.7 (A:) 2-methylisocitrate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: 2-methylisocitrate lyase species: Escherichia coli [TaxId: 562]
Probab=83.55 E-value=3.7 Score=38.33 Aligned_cols=87 Identities=11% Similarity=0.051 Sum_probs=60.3
Q ss_pred CceEEeccccCcHHHHHHHHCCCCEEEEc---ccccccCCCcccccc-chhHHH-HHHHHHhcCCCcEEecC--CCCC-H
Q psy1056 371 DMQVIGGNVLFGYQPRATLLNFIYQIEMI---KFIKKEYPDMQVIGR-NGTAVY-RVAEYASRRGVPVIADG--GVQS-V 442 (590)
Q Consensus 371 ~vpvi~g~v~s~~~a~~l~~~Gvd~i~v~---~~~~~~~~~~~~~g~-~~~~l~-~~~~~~~~~~v~iia~G--Gi~~-~ 442 (590)
+-|+.+-++-+.-.|+.+.++|.+++.++ +.... -|+.+.|. +.+.+. .+++.+...++|||+|+ |..+ +
T Consensus 15 ~~~~~~~~~~D~~sA~~~e~~Gf~a~~~sg~~~sa~~--~G~pD~~~~~~~e~~~~~~~i~~a~~~Pvi~D~d~GyG~~~ 92 (289)
T d1muma_ 15 ENPLQIVGTINANHALLAQRAGYQAIYLSGGGVAAGS--LGLPDLGISTLDDVLTDIRRITDVCSLPLLVDADIGFGSSA 92 (289)
T ss_dssp CSSEEEEECSSHHHHHHHHHTTCSCEEECHHHHHHTT--SCCCSSSCCCHHHHHHHHHHHHHHCCSCEEEECTTCSSSSH
T ss_pred CCCEEeecCCCHHHHHHHHHcCCCEEEhhHHHHHHHc--cCCCCCCCCChHHHHHHHHHHhcccCCCeeecccccccccc
Confidence 56788889999999999999999999872 22211 13555666 655543 35666666789999976 6554 5
Q ss_pred HHHH----HHHHcCCCEEEEC
Q psy1056 443 GHVM----KALALGASTAMMG 459 (590)
Q Consensus 443 ~di~----kalalGA~~v~~g 459 (590)
..+. +..+.||.++.+=
T Consensus 93 ~~v~~~v~~~~~aGvagi~iE 113 (289)
T d1muma_ 93 FNVARTVKSMIKAGAAGLHIE 113 (289)
T ss_dssp HHHHHHHHHHHHHTCSEEEEE
T ss_pred hHHHHHHHHHHHCCCCEEEec
Confidence 5553 4556899999543
|
| >d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional activator sigm54 (NtrC1), N-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=83.49 E-value=2.9 Score=34.06 Aligned_cols=67 Identities=25% Similarity=0.220 Sum_probs=50.8
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEec-cccCcHHHHHHHHCCCCEEEE
Q psy1056 331 DKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGG-NVLFGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 331 ~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g-~v~s~~~a~~l~~~Gvd~i~v 398 (590)
..+.+..+.+...|.+.+|..-+...| .+.++.+++..|+.|+|+= .-.+.+.+.++.++||+.+..
T Consensus 33 ~~eAl~~l~~~~~dlvilD~~mp~~~G-~e~~~~lr~~~~~~piI~lT~~~~~~~~~~a~~~Ga~dyl~ 100 (137)
T d1ny5a1 33 GKEAYKLLSEKHFNVVLLDLLLPDVNG-LEILKWIKERSPETEVIVITGHGTIKTAVEAMKMGAYDFLT 100 (137)
T ss_dssp HHHHHHHHHHSCCSEEEEESBCSSSBH-HHHHHHHHHHCTTSEEEEEEETTCHHHHHHHHTTTCCEEEE
T ss_pred HHHHHHHhhccccccchHHHhhhhhhH-HHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHcCCCEEEe
Confidence 456666677788999999876554444 5788889988889998853 334778999999999987744
|
| >d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Bacillus anthracis [TaxId: 1392]
Probab=82.94 E-value=4.1 Score=37.70 Aligned_cols=69 Identities=10% Similarity=0.130 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCch-----hhHHHHHHHHHHhC-CCceEEecccc-----CcHHHHHHHHCCCCEEEE
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNS-----IYQIEMIKFIKKEY-PDMQVIGGNVL-----FGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~-----~~~l~~i~~i~~~~-~~vpvi~g~v~-----s~~~a~~l~~~Gvd~i~v 398 (590)
.....++.+++.|++.+.+..+.|.. +...+.++...+.. +++|+++|-.. +.+-++.+.++|+|++-+
T Consensus 25 ~~~~~i~~l~~~Gv~gl~~~G~tGE~~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~ilv 104 (292)
T d1xkya1 25 KTTKLVNYLIDNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVDKRVPVIAGTGSNNTHASIDLTKKATEVGVDAVML 104 (292)
T ss_dssp HHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHCCCCEEEECeEccchhhCCHHHHHHHHHHHHHHhCCCceEEEecCcccHHHHHHHHHHHHHcCCCEEEE
Confidence 45567889999999999987655533 12234444444433 36899986544 346677788899999955
|
| >d1a04a2 c.23.1.1 (A:5-142) Nitrate/nitrite response regulator (NarL), receiver domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Nitrate/nitrite response regulator (NarL), receiver domain species: Escherichia coli [TaxId: 562]
Probab=82.88 E-value=2.9 Score=34.07 Aligned_cols=66 Identities=9% Similarity=0.005 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEec-cccCcHHHHHHHHCCCCEE
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGG-NVLFGYQPRATLLNFIYQI 396 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g-~v~s~~~a~~l~~~Gvd~i 396 (590)
+..+.++.+.+...|.+.+|..-....| ++.++.+++.+|+.|+++= ...+.+.+.++.++||+.+
T Consensus 36 ~~~~al~~~~~~~~DlvllD~~mP~~~G-~el~~~ir~~~~~~~vivlt~~~~~~~~~~a~~~Ga~~y 102 (138)
T d1a04a2 36 NGEQGIELAESLDPDLILLDLNMPGMNG-LETLDKLREKSLSGRIVVFSVSNHEEDVVTALKRGADGY 102 (138)
T ss_dssp SHHHHHHHHHHHCCSEEEEETTSTTSCH-HHHHHHHHHSCCCSEEEEEECCCCHHHHHHHHHTTCSEE
T ss_pred CHHHHHHHHHhcCCCEEEEecCCCCCCH-HHHHHHHHhhCCCCCEEEEEEECCHHHHHHHHHcCCCEE
Confidence 3445666666778999999876544444 6788999998888887753 3347788889999999987
|
| >d1izca_ c.1.12.5 (A:) Macrophomate synthase {Macrophoma commelinae [TaxId: 108330]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: HpcH/HpaI aldolase domain: Macrophomate synthase species: Macrophoma commelinae [TaxId: 108330]
Probab=82.87 E-value=12 Score=34.87 Aligned_cols=77 Identities=16% Similarity=0.065 Sum_probs=51.3
Q ss_pred EEeEeeccchhHHHHHHHHHHcCCcEEEEecCCCch--hhHHHHHHHHHHhC-CCc-eEEeccccCcHHHHHHHHCCCCE
Q psy1056 320 IVGAAIGTREADKNRLKLLSQAGVDVVILDSSQGNS--IYQIEMIKFIKKEY-PDM-QVIGGNVLFGYQPRATLLNFIYQ 395 (590)
Q Consensus 320 ~v~a~i~~~~~~~e~~~~li~~gad~i~V~~~~G~~--~~~l~~i~~i~~~~-~~v-pvi~g~v~s~~~a~~l~~~Gvd~ 395 (590)
.++..++... ...++.+...|.|.+.||.-||.. ..+...+..++..- ... |++-=.-.+...++++.++|+++
T Consensus 42 ~~G~~~~~~s--~~~~e~~a~~g~D~v~iD~EHg~~~~~~~~~~i~a~~~~~~~~~~~iVRvp~~~~~~I~~~LD~Ga~G 119 (299)
T d1izca_ 42 LMGVAHGIPS--TFVTKVLAATKPDFVWIDVEHGMFNRLELHDAIHAAQHHSEGRSLVIVRVPKHDEVSLSTALDAGAAG 119 (299)
T ss_dssp EEEEEECSCC--HHHHHHHHHTCCSEEEEETTTSCCCHHHHHHHHHHHHHHTTTCSEEEEECCTTCHHHHHHHHHHTCSE
T ss_pred eeeeeccCCC--HHHHHHHHcCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhCCCCCCeEEeCCCCChHHHHHHHHhCcCe
Confidence 4455554332 356677889999999999998743 34455666666542 123 44422344778889999999999
Q ss_pred EEE
Q psy1056 396 IEM 398 (590)
Q Consensus 396 i~v 398 (590)
|.+
T Consensus 120 Iiv 122 (299)
T d1izca_ 120 IVI 122 (299)
T ss_dssp EEE
T ss_pred eec
Confidence 987
|
| >d1wufa1 c.1.11.2 (A:1127-1370) N-acylamino acid racemase {Listeria innocua [TaxId: 1642]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Listeria innocua [TaxId: 1642]
Probab=82.76 E-value=13 Score=33.09 Aligned_cols=115 Identities=13% Similarity=0.126 Sum_probs=76.4
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEec--cccCcHHHHHH---HHCCCCEEEEcccccc
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGG--NVLFGYQPRAT---LLNFIYQIEMIKFIKK 404 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g--~v~s~~~a~~l---~~~Gvd~i~v~~~~~~ 404 (590)
...+.++...+.|.+.+-+...... -++.++.+++.+|++.+++- ..-+.++|..+ .+.+..++ +--
T Consensus 19 ~~~~~~~~~~~~Gf~~~Kikvg~~~---D~~~v~~ir~~~~~~~l~vDaN~~~~~~~a~~~~~l~~~~~~wi----EeP- 90 (244)
T d1wufa1 19 TLLQLVNQYVDQGYERVKLKIAPNK---DIQFVEAVRKSFPKLSLMADANSAYNREDFLLLKELDQYDLEMI----EQP- 90 (244)
T ss_dssp HHHHHHHHHHHHTCCEEEEECBTTB---SHHHHHHHHTTCTTSEEEEECTTCCCGGGHHHHHTTGGGTCSEE----ECC-
T ss_pred HHHHHHHHHHHCCCCEEEEEeCCcH---HHHHHHHHHHhccchhhhhhhhccccchhhhhhhcccccchhhh----cCc-
Confidence 4556788888899999888764322 26788899998888888753 22277777544 23444544 111
Q ss_pred cCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCC-CEEEECcc
Q psy1056 405 EYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGA-STAMMGSL 461 (590)
Q Consensus 405 ~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA-~~v~~g~~ 461 (590)
+ . ...+...+......++||.++..+.+..++..++..|| |.+++-..
T Consensus 91 ----~---~--~~d~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~a~d~v~~d~~ 139 (244)
T d1wufa1 91 ----F---G--TKDFVDHAWLQKQLKTRICLDENIRSVKDVEQAHSIGSCRAINLKLA 139 (244)
T ss_dssp ----S---C--SSCSHHHHHHHTTCSSEEEECTTCCSHHHHHHHHHHTCCSEEEECTG
T ss_pred ----c---c--ccchhhhhccccccccccccCccccchhhhhhhccccccceeecccc
Confidence 0 1 11122344444455799999999999999999999995 88876543
|
| >d1qpoa1 c.1.17.1 (A:117-285) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=82.01 E-value=2.1 Score=36.74 Aligned_cols=66 Identities=8% Similarity=0.009 Sum_probs=50.9
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccccCcHHHHHHHHCCCCEEEE
Q psy1056 331 DKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNVLFGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 331 ~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v~s~~~a~~l~~~Gvd~i~v 398 (590)
..+.+...++.|+|++.+|.- .++.+.+.++.++...|.+.+-+-+..+.+........|+|+|.+
T Consensus 88 s~~q~~~a~~~~~diImLDN~--sp~~~k~~v~~~~~~~~~i~lEaSGgI~~~ni~~ya~~GvD~IS~ 153 (169)
T d1qpoa1 88 SLEQLDAVLPEKPELILLDNF--AVWQTQTAVQRRDSRAPTVMLESSGGLSLQTAATYAETGVDYLAV 153 (169)
T ss_dssp SHHHHHHHGGGCCSEEEEETC--CHHHHHHHHHHHHHHCTTCEEEEESSCCTTTHHHHHHTTCSEEEC
T ss_pred cHHHhhhhhhcCCcEEEecCc--ChHhHHHHHHHhhccCCeeEEEEeCCCCHHHHHHHHHcCCCEEEC
Confidence 356777888999999998754 344566777778877777666565556999999999999999955
|
| >d1dbta_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Bacillus subtilis [TaxId: 1423]
Probab=81.89 E-value=2.8 Score=37.88 Aligned_cols=35 Identities=14% Similarity=0.163 Sum_probs=25.8
Q ss_pred CcEEecCCCCCHHH----------HHHHHHcCCCEEEECccccCC
Q psy1056 431 VPVIADGGVQSVGH----------VMKALALGASTAMMGSLLAGT 465 (590)
Q Consensus 431 v~iia~GGi~~~~d----------i~kalalGA~~v~~g~~l~~~ 465 (590)
-.++...||+-..+ ...|+..|||.+.+||++..+
T Consensus 176 ~~~ivtPGI~~~~~~~~dq~r~~tp~~a~~~GaD~iIVGR~I~~s 220 (237)
T d1dbta_ 176 SFLTVTPGIRMSEDAANDQVRVATPAIAREKGSSAIVVGRSITKA 220 (237)
T ss_dssp TCEEEECCBCCTTSCCTTCSSCBCHHHHHHTTCSEEEECHHHHTS
T ss_pred ceeEeccccccCCCCCCCceeeCCHHHHHHcCCCEEEECCcccCC
Confidence 44677778765432 457888999999999999543
|
| >d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=81.13 E-value=6.3 Score=36.46 Aligned_cols=114 Identities=15% Similarity=0.138 Sum_probs=67.1
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCch-----hhHHHHHHHHHHhC-CCceEEecccc-----CcHHHHHHHHCCCCEEEE
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNS-----IYQIEMIKFIKKEY-PDMQVIGGNVL-----FGYQPRATLLNFIYQIEM 398 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~-----~~~l~~i~~i~~~~-~~vpvi~g~v~-----s~~~a~~l~~~Gvd~i~v 398 (590)
...+.++.+++.|++.+.+..+.|.. +...+.++...+.. ..+|+++|-.. +.+-++.+.++|+|++-+
T Consensus 29 ~l~~~i~~li~~Gv~Gi~v~G~tGE~~~Ls~eEr~~l~~~~~~~~~~~~~vi~g~~~~s~~~~i~~a~~a~~~Gad~v~i 108 (296)
T d1xxxa1 29 TAARLANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKACAAEGAHGLLV 108 (296)
T ss_dssp HHHHHHHHHHHTTCSEEEESSTTTTTTTSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHHcCCCEEEECeeccchhhCCHHHHHHHHHHHHHHhccccceEeccccchhHHHHHHHHHHHHhcCCeEEE
Confidence 45567889999999999987554432 11234444444433 36899987555 455667778899999954
Q ss_pred cccccccCCCccccccchhHHHH-HHHHHhcCCCcEEe-----cCCCCCHHHHHHHHHc
Q psy1056 399 IKFIKKEYPDMQVIGRNGTAVYR-VAEYASRRGVPVIA-----DGGVQSVGHVMKALAL 451 (590)
Q Consensus 399 ~~~~~~~~~~~~~~g~~~~~l~~-~~~~~~~~~v~iia-----~GGi~~~~di~kalal 451 (590)
..-... ..+.+.+.+ ..+.+...++||+. .+|..-+.+..+.|+-
T Consensus 109 ~~P~~~--------~~~~~~l~~~~~~v~~~~~~pi~lYn~p~~~g~~~~~~~~~~L~~ 159 (296)
T d1xxxa1 109 VTPYYS--------KPPQRGLQAHFTAVADATELPMLLYDIPGRSAVPIEPDTIRALAS 159 (296)
T ss_dssp ECCCSS--------CCCHHHHHHHHHHHHTTCSSCEEEEECHHHHSSCCCHHHHHHHHT
T ss_pred EeccCC--------CCCHHHHHHHHHHHHHhcCCCEEEEECccccCCCCCHHHHHHhcC
Confidence 211110 112222222 34444455678776 3466666677777754
|
| >d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: CheY protein species: Thermotoga maritima [TaxId: 2336]
Probab=80.93 E-value=3.5 Score=32.61 Aligned_cols=66 Identities=15% Similarity=0.063 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEec-cccCcHHHHHHHHCCCCEE
Q psy1056 330 ADKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGG-NVLFGYQPRATLLNFIYQI 396 (590)
Q Consensus 330 ~~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g-~v~s~~~a~~l~~~Gvd~i 396 (590)
+..+.++.+.+...|.+.+|..-....| ++.++.+++..|+.|+++= .-...+.+.++.++||+.+
T Consensus 34 ~~~~al~~~~~~~~dliilD~~mp~~~G-~e~~~~ir~~~~~~pvi~ls~~~~~~~~~~a~~~Ga~~y 100 (118)
T d1u0sy_ 34 NGREAVEKYKELKPDIVTMDITMPEMNG-IDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDF 100 (118)
T ss_dssp SHHHHHHHHHHHCCSEEEEECSCGGGCH-HHHHHHHHHHCTTCCEEEEECTTCHHHHHHHHHTTCCEE
T ss_pred CHHHHHHHHHhccCCEEEEecCCCCCCH-HHHHHHHHHhCCCCcEEEEEccCCHHHHHHHHHcCCCEE
Confidence 3456667777788999999876544434 6788888888888887753 3347778889999999977
|
| >d2pl1a1 c.23.1.1 (A:1-119) PhoP receiver domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: PhoP receiver domain species: Escherichia coli [TaxId: 562]
Probab=80.49 E-value=3.8 Score=32.46 Aligned_cols=65 Identities=11% Similarity=-0.032 Sum_probs=48.7
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhCCCceEEeccc-cCcHHHHHHHHCCCCEE
Q psy1056 331 DKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEYPDMQVIGGNV-LFGYQPRATLLNFIYQI 396 (590)
Q Consensus 331 ~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~~~vpvi~g~v-~s~~~a~~l~~~Gvd~i 396 (590)
..+....+.+...|.+.+|..-.+..| .+.++.+++..+..|+++=.. .+.+++.++.++|++.+
T Consensus 33 g~eal~~l~~~~~dliilD~~mP~~~G-~e~~~~i~~~~~~~pvi~lt~~~~~~~~~~a~~~Ga~~y 98 (119)
T d2pl1a1 33 AKEADYYLNEHIPDIAIVDLGLPDEDG-LSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDY 98 (119)
T ss_dssp HHHHHHHHHHSCCSEEEECSCCSSSCH-HHHHHHHHHTTCCSCEEEEESCCCHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHHhcccceeehhccCCCchh-HHHHHHHHhcCcccceEeeeccCCHHHHHHHHHcCCCEE
Confidence 345666677778899999876544444 578888998888888885333 36778889999999977
|
| >d2mnra1 c.1.11.2 (A:133-359) Mandelate racemase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Mandelate racemase species: Pseudomonas putida [TaxId: 303]
Probab=80.03 E-value=14 Score=32.41 Aligned_cols=114 Identities=16% Similarity=0.049 Sum_probs=76.5
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCchhhHHHHHHHHHHhC-CCceEEec-ccc-CcHHHHH----HHHCCCCEEEEccccc
Q psy1056 331 DKNRLKLLSQAGVDVVILDSSQGNSIYQIEMIKFIKKEY-PDMQVIGG-NVL-FGYQPRA----TLLNFIYQIEMIKFIK 403 (590)
Q Consensus 331 ~~e~~~~li~~gad~i~V~~~~G~~~~~l~~i~~i~~~~-~~vpvi~g-~v~-s~~~a~~----l~~~Gvd~i~v~~~~~ 403 (590)
..+.+....+.|...+-+.....+...-++.++.+++.+ ++..+++- |.. +.++|.+ |.+.|+.++ +--
T Consensus 16 ~~e~~~~~~~~G~~~~KikvG~~~~~~di~~i~~ir~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~~~~i----EeP 91 (227)
T d2mnra1 16 ATERAVTAAELGFRAVKTKIGYPALDQDLAVVRSIRQAVGDDFGIMVDYNQSLDVPAAIKRSQALQQEGVTWI----EEP 91 (227)
T ss_dssp HHHHHHHHHHTTCSEEEEECCCSSHHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHHHHTCSEE----ECC
T ss_pred HHHHHHHHHHCCCCEEEEccCCCCHHHHHHHHHHHHHHhCCCcEEEEeccccCChHHHHHHHHHhhhchhhhh----cCc
Confidence 345677888889999988775444445578889999877 67888862 222 6666654 445777777 211
Q ss_pred ccCCCccccccchhHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHcCC-CEEEE
Q psy1056 404 KEYPDMQVIGRNGTAVYRVAEYASRRGVPVIADGGVQSVGHVMKALALGA-STAMM 458 (590)
Q Consensus 404 ~~~~~~~~~g~~~~~l~~~~~~~~~~~v~iia~GGi~~~~di~kalalGA-~~v~~ 458 (590)
+ .+..+...++.....++||.++-.+.+..+...++..|+ |.++.
T Consensus 92 -----~-----~~~~~~~~~~l~~~~~ipia~gE~~~~~~~~~~~~~~~~~d~~~~ 137 (227)
T d2mnra1 92 -----T-----LQHDYEGHQRIQSKLNVPVQMGENWLGPEEMFKALSIGACRLAMP 137 (227)
T ss_dssp -----S-----CTTCHHHHHHHHHTCSSCEEECTTCCSHHHHHHHHHTTCCSEECC
T ss_pred -----c-----cccchhhhHHHHHHcCCccccCceeEeechhhhhHhcCceeeeec
Confidence 1 111122334444456799999999999999999999987 45544
|