Psyllid ID: psy10572
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 204 | 2.2.26 [Sep-21-2011] | |||||||
| P15246 | 227 | Protein-L-isoaspartate(D- | yes | N/A | 0.955 | 0.859 | 0.457 | 1e-42 | |
| P80895 | 227 | Protein-L-isoaspartate(D- | yes | N/A | 0.955 | 0.859 | 0.457 | 1e-42 | |
| Q92047 | 228 | Protein-L-isoaspartate(D- | no | N/A | 0.843 | 0.754 | 0.485 | 4e-42 | |
| Q4R5H0 | 227 | Protein-L-isoaspartate(D- | N/A | N/A | 0.955 | 0.859 | 0.452 | 1e-41 | |
| P22061 | 227 | Protein-L-isoaspartate(D- | no | N/A | 0.955 | 0.859 | 0.452 | 1e-41 | |
| Q5F3N1 | 228 | Protein-L-isoaspartate(D- | no | N/A | 0.833 | 0.745 | 0.479 | 1e-41 | |
| Q5RA89 | 227 | Protein-L-isoaspartate(D- | no | N/A | 0.955 | 0.859 | 0.452 | 1e-41 | |
| P23506 | 227 | Protein-L-isoaspartate(D- | no | N/A | 0.955 | 0.859 | 0.447 | 3e-41 | |
| Q43209 | 230 | Protein-L-isoaspartate O- | N/A | N/A | 0.852 | 0.756 | 0.494 | 5e-41 | |
| P22062 | 227 | Protein-L-isoaspartate(D- | yes | N/A | 0.955 | 0.859 | 0.442 | 7e-41 |
| >sp|P15246|PIMT_BOVIN Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Bos taurus GN=PCMT1 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 172 bits (436), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 91/199 (45%), Positives = 121/199 (60%), Gaps = 4/199 (2%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSG 60
ML DR ++ PY + IG+ A IS+PH+HA LELL D++ GA+ LD+GSG
Sbjct: 32 MLATDRSHYAK---CNPYMDSPQSIGFQATISAPHMHAYALELLFDQLNEGAKALDVGSG 88
Query: 61 SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE 120
SG LTAC A M GP G+V G++H+ EL + SI N+ K + LL GRVQ VV +G+ GY
Sbjct: 89 SGILTACFARMVGPSGKVIGIDHIKELVDDSINNVRKDDPMLLSSGRVQLVVGDGRMGYA 148
Query: 121 REAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYTIVTTV 180
EAPYD IHV + +PQ L+DQL PGGR+++PVG Q L DKL DG ++
Sbjct: 149 AEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDG-SVKMKP 207
Query: 181 VRGVRTNPLYRDRFQQKKY 199
+ GV PL Q ++
Sbjct: 208 LMGVIYVPLTDKEKQWSRW 226
|
Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein. Bos taurus (taxid: 9913) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 7EC: 7 |
| >sp|P80895|PIMT_PIG Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Sus scrofa GN=PCMT1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 172 bits (436), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 91/199 (45%), Positives = 121/199 (60%), Gaps = 4/199 (2%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSG 60
ML DR ++ PY + IG+ A IS+PH+HA LELL D++ GA+ LD+GSG
Sbjct: 32 MLATDRSHYAK---CNPYMDSPQSIGFQATISAPHMHAYALELLFDQLHEGAKALDVGSG 88
Query: 61 SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE 120
SG LTAC A M GP G+V G++H+ EL + SI N+ K + LL GRVQ VV +G+ GY
Sbjct: 89 SGILTACFARMVGPSGKVIGIDHIKELVDDSINNVRKDDPMLLSSGRVQLVVGDGRMGYA 148
Query: 121 REAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYTIVTTV 180
EAPYD IHV + +PQ L+DQL PGGR+++PVG Q L DKL DG ++
Sbjct: 149 EEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDG-SVKMKP 207
Query: 181 VRGVRTNPLYRDRFQQKKY 199
+ GV PL Q ++
Sbjct: 208 LMGVIYVPLTDKEKQWSRW 226
|
Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein. Sus scrofa (taxid: 9823) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 7 |
| >sp|Q92047|PIMT_DANRE Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Danio rerio GN=pcmt PE=2 SV=3 | Back alignment and function description |
|---|
Score = 171 bits (432), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 85/175 (48%), Positives = 113/175 (64%), Gaps = 3/175 (1%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSG 60
ML DR +F +R PY + IGY A IS+PH+HA LELL D + GA+ LD+GSG
Sbjct: 32 MLATDRSHF-SRC--NPYMDSPQSIGYQATISAPHMHAYALELLHDHLYEGAKALDVGSG 88
Query: 61 SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE 120
SG L+ C + M GP G+V G++H+ EL E SI N+ K + L+ GR++ +V +G+ G+
Sbjct: 89 SGILSVCFSRMVGPTGKVIGIDHIKELVEDSIANVKKDDPSLITSGRIKLIVGDGRMGFT 148
Query: 121 REAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYT 175
EAPYD IHV + T+PQ LLDQL PGGR+++PVG Q L DKL DG T
Sbjct: 149 EEAPYDAIHVGAAAPTVPQALLDQLKPGGRLILPVGPAGGNQMLEQYDKLEDGST 203
|
Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Danio rerio (taxid: 7955) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 7 |
| >sp|Q4R5H0|PIMT_MACFA Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Macaca fascicularis GN=PCMT1 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 169 bits (428), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 90/199 (45%), Positives = 120/199 (60%), Gaps = 4/199 (2%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSG 60
ML DR ++ PY + IG+ A IS+PH+HA LELL D++ GA+ LD+GSG
Sbjct: 32 MLATDRSHYAE---CNPYMDSPQSIGFQATISAPHMHAYALELLFDQLHEGAKALDVGSG 88
Query: 61 SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE 120
SG LTAC A M G G+V G++H+ EL + SI N+ K + LL GRVQ VV +G+ GY
Sbjct: 89 SGILTACFARMVGCTGKVIGIDHIKELVDDSINNVRKDDPTLLSSGRVQLVVGDGRMGYA 148
Query: 121 REAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYTIVTTV 180
EAPYD IHV + +PQ L+DQL PGGR+++PVG Q L DKL DG ++
Sbjct: 149 EEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDG-SVKMKP 207
Query: 181 VRGVRTNPLYRDRFQQKKY 199
+ GV PL Q ++
Sbjct: 208 LMGVIYVPLTDKEKQWSRW 226
|
Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein. Macaca fascicularis (taxid: 9541) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 7 |
| >sp|P22061|PIMT_HUMAN Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Homo sapiens GN=PCMT1 PE=1 SV=4 | Back alignment and function description |
|---|
Score = 169 bits (428), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 90/199 (45%), Positives = 120/199 (60%), Gaps = 4/199 (2%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSG 60
ML DR ++ PY + IG+ A IS+PH+HA LELL D++ GA+ LD+GSG
Sbjct: 32 MLATDRSHYAK---CNPYMDSPQSIGFQATISAPHMHAYALELLFDQLHEGAKALDVGSG 88
Query: 61 SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE 120
SG LTAC A M G G+V G++H+ EL + S+ N+ K + LL GRVQ VV +G+ GY
Sbjct: 89 SGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYA 148
Query: 121 REAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYTIVTTV 180
EAPYD IHV + +PQ L+DQL PGGR+++PVG Q L DKL DG +I
Sbjct: 149 EEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDG-SIKMKP 207
Query: 181 VRGVRTNPLYRDRFQQKKY 199
+ GV PL Q ++
Sbjct: 208 LMGVIYVPLTDKEKQWSRW 226
|
Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 7 |
| >sp|Q5F3N1|PIMT_CHICK Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Gallus gallus GN=PCMT1 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 169 bits (427), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 83/173 (47%), Positives = 112/173 (64%), Gaps = 3/173 (1%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSG 60
ML DR ++ PY + IG+ A IS+PH+HA LELL D++ GA+ LD+GSG
Sbjct: 32 MLATDRCHYAKY---NPYMDSPQSIGFQATISAPHMHAYALELLSDQLHEGAKALDVGSG 88
Query: 61 SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE 120
SG LTAC + M GP+G+V G++H+ EL + SI N+ K + LL GRV+ +V +G+ GY
Sbjct: 89 SGILTACFSRMVGPKGQVVGIDHIKELVDDSINNVKKDDPTLLSSGRVKLIVGDGRMGYA 148
Query: 121 REAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADG 173
EAPYD IHV + +PQ L+DQL PGGR+++PVG Q L DKL DG
Sbjct: 149 EEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQMLEQYDKLEDG 201
|
Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Gallus gallus (taxid: 9031) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 7 |
| >sp|Q5RA89|PIMT_PONAB Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Pongo abelii GN=PCMT1 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 169 bits (427), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 90/199 (45%), Positives = 120/199 (60%), Gaps = 4/199 (2%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSG 60
ML DR ++ PY + IG+ A IS+PH+HA LELL D++ GA+ LD+GSG
Sbjct: 32 MLATDRSHYAK---CNPYMDSPQSIGFQATISAPHMHAYALELLFDQLHEGAKALDVGSG 88
Query: 61 SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE 120
SG LTAC A M G G+V G++H+ EL + SI N+ K + LL GRVQ VV +G+ GY
Sbjct: 89 SGILTACFARMVGCTGKVIGIDHIKELVDDSINNVRKDDPTLLSSGRVQLVVGDGRMGYA 148
Query: 121 REAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYTIVTTV 180
EAPYD IHV + +PQ L+DQL PGGR+++PVG Q L DKL DG ++
Sbjct: 149 EEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDG-SVKMKP 207
Query: 181 VRGVRTNPLYRDRFQQKKY 199
+ GV PL Q ++
Sbjct: 208 LMGVIYVPLTDKEKQWSRW 226
|
Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein. Pongo abelii (taxid: 9601) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 7 |
| >sp|P23506|PIMT_MOUSE Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Mus musculus GN=Pcmt1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 168 bits (425), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 89/199 (44%), Positives = 121/199 (60%), Gaps = 4/199 (2%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSG 60
ML DR ++ + PY + IG+ A IS+PH+HA LELL D++ GA+ LD+GSG
Sbjct: 32 MLATDRSHYAK---SNPYMDSPQSIGFQATISAPHMHAYALELLFDQLHEGAKALDVGSG 88
Query: 61 SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE 120
SG LTAC A M G G+V G++H+ EL + SI N+ K + LL GRV+ VV +G+ GY
Sbjct: 89 SGILTACFARMVGNSGKVIGIDHIKELVDDSITNVKKDDPMLLSSGRVRLVVGDGRMGYA 148
Query: 121 REAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYTIVTTV 180
EAPYD IHV + +PQ L+DQL PGGR+++PVG Q L DKL DG ++
Sbjct: 149 EEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDG-SVKMKP 207
Query: 181 VRGVRTNPLYRDRFQQKKY 199
+ GV PL Q ++
Sbjct: 208 LMGVIYVPLTDKEKQWSRW 226
|
Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 7 |
| >sp|Q43209|PIMT_WHEAT Protein-L-isoaspartate O-methyltransferase OS=Triticum aestivum GN=PCM PE=1 SV=1 | Back alignment and function description |
|---|
Score = 167 bits (422), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 88/178 (49%), Positives = 113/178 (63%), Gaps = 4/178 (2%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSG 60
M +DR F PY IGY A IS+PH+HA LELLKD ++PG LD+GSG
Sbjct: 35 METIDRALFVPEGFT-PYTDSPMPIGYNATISAPHMHATCLELLKDYLQPGMHALDVGSG 93
Query: 61 SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK-GNSELLDQGRVQFVVWNGKHGY 119
SGYLTAC A M GPEGR G+EH+ EL +S +N+++ + L+ G + F V +G+ G+
Sbjct: 94 SGYLTACFAMMVGPEGRAVGIEHIPELVVASTENVERSAAAALMKDGSLSFHVSDGRLGW 153
Query: 120 EREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYTIV 177
APYD IHV + IP+ LL+QL PGGRMV+PVG Q+L +IDK ADG T V
Sbjct: 154 PDAAPYDAIHVGAAAPEIPRPLLEQLKPGGRMVIPVGT--YSQDLQVIDKSADGSTSV 209
|
Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. This enzyme does not act on D-aspartyl residues. Triticum aestivum (taxid: 4565) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 7 |
| >sp|P22062|PIMT_RAT Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Rattus norvegicus GN=Pcmt1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 167 bits (422), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 88/199 (44%), Positives = 121/199 (60%), Gaps = 4/199 (2%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSG 60
ML DR ++ + PY + IG+ A IS+PH+HA LELL D++ GA+ LD+GSG
Sbjct: 32 MLATDRSHYAK---SNPYMDSPQSIGFQATISAPHMHAYALELLFDQLHEGAKALDVGSG 88
Query: 61 SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE 120
SG LTAC A M G G+V G++H+ EL + SI N+ K + LL GRV+ VV +G+ G+
Sbjct: 89 SGILTACFARMVGHSGKVIGIDHIKELVDDSITNVKKDDPMLLSSGRVRLVVGDGRMGFA 148
Query: 121 REAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYTIVTTV 180
EAPYD IHV + +PQ L+DQL PGGR+++PVG Q L DKL DG ++
Sbjct: 149 EEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDG-SVKMKP 207
Query: 181 VRGVRTNPLYRDRFQQKKY 199
+ GV PL Q ++
Sbjct: 208 LMGVIYVPLTDKEKQWSRW 226
|
Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein. Rattus norvegicus (taxid: 10116) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 7 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 204 | ||||||
| 242014348 | 287 | protein-L-isoaspartate O-methyltransfera | 0.936 | 0.665 | 0.482 | 2e-44 | |
| 320168944 | 321 | L-isoaspartyl protein carboxyl methyltra | 0.926 | 0.588 | 0.489 | 1e-43 | |
| 114052539 | 249 | L-isoaspartyl protein carboxyl methyltra | 0.852 | 0.698 | 0.502 | 2e-43 | |
| 326919840 | 248 | PREDICTED: protein-L-isoaspartate(D-aspa | 0.906 | 0.745 | 0.486 | 9e-43 | |
| 432946570 | 269 | PREDICTED: protein-L-isoaspartate(D-aspa | 0.936 | 0.710 | 0.484 | 1e-42 | |
| 432946568 | 268 | PREDICTED: protein-L-isoaspartate(D-aspa | 0.936 | 0.712 | 0.484 | 1e-42 | |
| 390345040 | 296 | PREDICTED: protein-L-isoaspartate(D-aspa | 0.906 | 0.625 | 0.476 | 3e-42 | |
| 348531162 | 246 | PREDICTED: protein-L-isoaspartate(D-aspa | 0.936 | 0.776 | 0.487 | 3e-42 | |
| 224050699 | 245 | PREDICTED: protein-L-isoaspartate(D-aspa | 0.906 | 0.755 | 0.481 | 3e-42 | |
| 357618961 | 225 | L-isoaspartyl protein carboxyl methyltra | 0.852 | 0.773 | 0.491 | 8e-42 |
| >gi|242014348|ref|XP_002427853.1| protein-L-isoaspartate O-methyltransferase, putative [Pediculus humanus corporis] gi|212512322|gb|EEB15115.1| protein-L-isoaspartate O-methyltransferase, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 94/195 (48%), Positives = 124/195 (63%), Gaps = 4/195 (2%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSG 60
ML+VDR N+ PY + IGYG IS+PH+HA LELLKD + G + LD+GSG
Sbjct: 32 MLQVDRGNYSKAA---PYMDAPQGIGYGVTISAPHMHAHALELLKDHLTEGEKALDVGSG 88
Query: 61 SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE 120
SGYLT C+A M G EGR G++H+ EL ++S +N+ K ELLD GRV+FVV +G+ GY
Sbjct: 89 SGYLTVCMALMVGQEGRAVGIDHIAELIDTSTENVRKDKPELLDSGRVKFVVGDGRRGYP 148
Query: 121 REAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYTIVTTV 180
+ PY+ IHV + +PQ L+DQL PGGR+++P+G QNL IDK ADG + T
Sbjct: 149 DDGPYNAIHVGAASPNLPQSLIDQLKPGGRLIVPIGPEGGNQNLEQIDKKADG-SFTRTP 207
Query: 181 VRGVRTNPLYRDRFQ 195
+ GV PL Q
Sbjct: 208 LMGVVYVPLTDKEAQ 222
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|320168944|gb|EFW45843.1| L-isoaspartyl protein carboxyl methyltransferase [Capsaspora owczarzaki ATCC 30864] | Back alignment and taxonomy information |
|---|
Score = 181 bits (460), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 96/196 (48%), Positives = 135/196 (68%), Gaps = 7/196 (3%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSG 60
M VDR +F + +PY+ + IG+GA IS+PH+HA +LELLK ++PG R+LD+GSG
Sbjct: 129 MRAVDRGDF---TLTQPYQDSPQPIGHGATISAPHMHAHVLELLKGHLRPGMRVLDVGSG 185
Query: 61 SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE 120
SGYL AC+A+M GP G+V G+EH+ EL S+ N+ + ++E L+ GR++ VV +G+ G
Sbjct: 186 SGYLCACMAHMVGPAGKVVGIEHIPELVNMSLINLKRHHNEALEAGRIEIVVGDGRLGIS 245
Query: 121 REAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYTIVTTV 180
+ +D IHV + TIPQ L+DQL PGGR+V+PVG+ F GQ+L +DKL DG +IVT
Sbjct: 246 -GSQFDAIHVGAAAPTIPQSLVDQLKPGGRLVIPVGQSF-GQSLEQVDKLPDG-SIVTQH 302
Query: 181 VRGVRTNPLYRDRFQQ 196
+ GV PL DR Q
Sbjct: 303 LMGVIYVPLT-DREHQ 317
|
Source: Capsaspora owczarzaki ATCC 30864 Species: Capsaspora owczarzaki Genus: Capsaspora Family: Order: Class: Ichthyosporea Phylum: Superkingdom: Eukaryota |
| >gi|114052539|ref|NP_001040252.1| L-isoaspartyl protein carboxyl methyltransferase [Bombyx mori] gi|87248521|gb|ABD36313.1| L-isoaspartyl protein carboxyl methyltransferase [Bombyx mori] | Back alignment and taxonomy information |
|---|
Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 89/177 (50%), Positives = 117/177 (66%), Gaps = 3/177 (1%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSG 60
ML VDRKN+ + PY+ + IG+ A IS+PH+HA LE LK+++ PG + LD+GSG
Sbjct: 54 MLAVDRKNYCP---SSPYQDSPQSIGFSATISAPHMHAHALEKLKNQLVPGEKALDVGSG 110
Query: 61 SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE 120
SGYLTAC+A M G GRV G+EH+ EL + KNI N LL R++ VV +G+ GY
Sbjct: 111 SGYLTACMAMMLGETGRVVGIEHISELVNLATKNIQNDNPSLLSSERIKLVVGDGRLGYP 170
Query: 121 REAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYTIV 177
EAPY IHV + T+PQ L+DQL PGGR+++PVG Q+LT +DK DG T V
Sbjct: 171 SEAPYSAIHVGAAAPTLPQALIDQLKPGGRLIVPVGPEGGEQHLTQVDKAQDGTTTV 227
|
Source: Bombyx mori Species: Bombyx mori Genus: Bombyx Family: Bombycidae Order: Lepidoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|326919840|ref|XP_003206185.1| PREDICTED: protein-L-isoaspartate(D-aspartate) O-methyltransferase-like [Meleagris gallopavo] gi|363734030|ref|XP_420939.3| PREDICTED: protein-L-isoaspartate(D-aspartate) O-methyltransferase [Gallus gallus] | Back alignment and taxonomy information |
|---|
Score = 178 bits (452), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 92/189 (48%), Positives = 122/189 (64%), Gaps = 4/189 (2%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSG 60
+L DR ++ PY + IGY A IS+PH+HA LELLKD++ GA+ LD+GSG
Sbjct: 52 LLATDRGHYIKYF---PYMDSPQSIGYKATISAPHMHAHALELLKDQLVEGAKALDVGSG 108
Query: 61 SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE 120
SGYLTAC A M GP G+ GVEH+ EL SI+N+ + + LL GRV+ VV +G+ GY
Sbjct: 109 SGYLTACFARMVGPTGKAVGVEHIKELVNESIRNVKEDDPTLLSSGRVKLVVGDGRQGYP 168
Query: 121 REAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYTIVTTV 180
EAPYD IHV + T+PQ+LL++L PGGR+++PVG Q L DK +DG I+ T
Sbjct: 169 EEAPYDAIHVGAAAPTVPQELLNELKPGGRLILPVGPEGANQVLMQYDKTSDG-QIIETQ 227
Query: 181 VRGVRTNPL 189
+ GV PL
Sbjct: 228 LMGVIYVPL 236
|
Source: Meleagris gallopavo Species: Meleagris gallopavo Genus: Meleagris Family: Phasianidae Order: Galliformes Class: Aves Phylum: Chordata Superkingdom: Eukaryota |
| >gi|432946570|ref|XP_004083831.1| PREDICTED: protein-L-isoaspartate(D-aspartate) O-methyltransferase-like isoform 2 [Oryzias latipes] | Back alignment and taxonomy information |
|---|
Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 95/196 (48%), Positives = 128/196 (65%), Gaps = 5/196 (2%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSG 60
ML DR +F +R PY + IG+ A IS+PH+HA LELL D++ GA+ LD+GSG
Sbjct: 73 MLATDRAHF-SRC--NPYMDSPQSIGFQATISAPHMHAYALELLHDQLYEGAKALDVGSG 129
Query: 61 SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE 120
SG L+ C A M GP+G+V G++H+ EL + SI N+ K +S L+ GR++ VV +G+ GY
Sbjct: 130 SGILSVCFARMVGPKGKVIGIDHIKELVDDSINNVKKDDSSLITSGRIKLVVGDGRMGYP 189
Query: 121 REAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYTIVTTV 180
EAPYD IHV + T+PQ LLDQL PGGR+++PVG P Q L DKL DG T + +
Sbjct: 190 EEAPYDAIHVGAAAPTVPQALLDQLKPGGRLILPVGPPGGNQMLEQYDKLEDGSTKMKPL 249
Query: 181 VRGVRTNPLYRDRFQQ 196
+ GV PL DR +Q
Sbjct: 250 M-GVIYVPL-TDRDKQ 263
|
Source: Oryzias latipes Species: Oryzias latipes Genus: Oryzias Family: Adrianichthyidae Order: Beloniformes Class: Actinopterygii Phylum: Chordata Superkingdom: Eukaryota |
| >gi|432946568|ref|XP_004083830.1| PREDICTED: protein-L-isoaspartate(D-aspartate) O-methyltransferase-like isoform 1 [Oryzias latipes] | Back alignment and taxonomy information |
|---|
Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 95/196 (48%), Positives = 128/196 (65%), Gaps = 5/196 (2%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSG 60
ML DR +F +R PY + IG+ A IS+PH+HA LELL D++ GA+ LD+GSG
Sbjct: 73 MLATDRAHF-SRC--NPYMDSPQSIGFQATISAPHMHAYALELLHDQLYEGAKALDVGSG 129
Query: 61 SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE 120
SG L+ C A M GP+G+V G++H+ EL + SI N+ K +S L+ GR++ VV +G+ GY
Sbjct: 130 SGILSVCFARMVGPKGKVIGIDHIKELVDDSINNVKKDDSSLITSGRIKLVVGDGRMGYP 189
Query: 121 REAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYTIVTTV 180
EAPYD IHV + T+PQ LLDQL PGGR+++PVG P Q L DKL DG T + +
Sbjct: 190 EEAPYDAIHVGAAAPTVPQALLDQLKPGGRLILPVGPPGGNQMLEQYDKLEDGSTKMKPL 249
Query: 181 VRGVRTNPLYRDRFQQ 196
+ GV PL DR +Q
Sbjct: 250 M-GVIYVPL-TDRDKQ 263
|
Source: Oryzias latipes Species: Oryzias latipes Genus: Oryzias Family: Adrianichthyidae Order: Beloniformes Class: Actinopterygii Phylum: Chordata Superkingdom: Eukaryota |
| >gi|390345040|ref|XP_786523.3| PREDICTED: protein-L-isoaspartate(D-aspartate) O-methyltransferase-like [Strongylocentrotus purpuratus] | Back alignment and taxonomy information |
|---|
Score = 177 bits (449), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 90/189 (47%), Positives = 121/189 (64%), Gaps = 4/189 (2%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSG 60
M VDRK++ + N PY + IGY IS+PH+HA LELLKD + G LD+GSG
Sbjct: 100 MRGVDRKHYSS---NSPYADSPQSIGYAVTISAPHMHAHALELLKDHLSEGKAALDVGSG 156
Query: 61 SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE 120
SGYLT+C+A M G G+V G++H+ EL + S KNI+K N +LL GR+Q +V +G+ GY
Sbjct: 157 SGYLTSCMAIMVGSSGKVVGIDHIKELVDKSRKNIEKDNPDLLTSGRIQLIVGDGRQGYP 216
Query: 121 REAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYTIVTTV 180
APYD IHV + T+PQ L++QL PGGR+++PVG QNL DK +G T+
Sbjct: 217 AGAPYDAIHVGAAAPTLPQALIEQLKPGGRLIIPVGPQGAAQNLEQYDKTPEGQVTKKTL 276
Query: 181 VRGVRTNPL 189
+ GV PL
Sbjct: 277 M-GVVYVPL 284
|
Source: Strongylocentrotus purpuratus Species: Strongylocentrotus purpuratus Genus: Strongylocentrotus Family: Strongylocentrotidae Order: Echinoida Class: Echinoidea Phylum: Echinodermata Superkingdom: Eukaryota |
| >gi|348531162|ref|XP_003453079.1| PREDICTED: protein-L-isoaspartate(D-aspartate) O-methyltransferase-like [Oreochromis niloticus] | Back alignment and taxonomy information |
|---|
Score = 177 bits (448), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 95/195 (48%), Positives = 123/195 (63%), Gaps = 4/195 (2%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSG 60
ML DR ++R + PY + IGY A IS+PH+HA LELL DK+ GA LD+GSG
Sbjct: 53 MLATDR-GLYSR--DYPYADSPQSIGYRATISAPHMHAHALELLGDKLTEGASALDVGSG 109
Query: 61 SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE 120
SGYLTAC A M GP GRV G+EH+ EL + SIKN+ + ELL GR++ VV +G+ GY
Sbjct: 110 SGYLTACFARMTGPTGRVVGIEHIDELVQMSIKNVQADDPELLSSGRIKLVVGDGRLGYP 169
Query: 121 REAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYTIVTTV 180
APYD IHV + T+P+ LL+QL PGGR+V+PVG Q L D+ +DG + +
Sbjct: 170 DGAPYDAIHVGAAAATVPKALLEQLKPGGRLVLPVGPDGGSQVLEQYDRQSDG-SFLKKA 228
Query: 181 VRGVRTNPLYRDRFQ 195
+ GV PL R Q
Sbjct: 229 LMGVVYVPLTDKRHQ 243
|
Source: Oreochromis niloticus Species: Oreochromis niloticus Genus: Oreochromis Family: Cichlidae Order: Perciformes Class: Actinopterygii Phylum: Chordata Superkingdom: Eukaryota |
| >gi|224050699|ref|XP_002195928.1| PREDICTED: protein-L-isoaspartate(D-aspartate) O-methyltransferase-like [Taeniopygia guttata] | Back alignment and taxonomy information |
|---|
Score = 177 bits (448), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 91/189 (48%), Positives = 121/189 (64%), Gaps = 4/189 (2%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSG 60
+L DR ++ PY + IGY A IS+PH+HA LELLKD++ GA+ LD+GSG
Sbjct: 52 LLATDRGHYIKYF---PYMDSPQSIGYKATISAPHMHAHALELLKDQLVEGAKALDVGSG 108
Query: 61 SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE 120
SGYLTAC A M GP G+ GVEH+ EL SI+N+ + + LL GRV+ VV +G+ GY
Sbjct: 109 SGYLTACFARMIGPTGKAVGVEHIKELVHESIRNVQEDDPTLLSSGRVKLVVGDGRQGYP 168
Query: 121 REAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYTIVTTV 180
EAPYD IHV + T+P++LL +L PGGR+++PVG Q L DK +DG I+ T
Sbjct: 169 EEAPYDAIHVGAAAATVPKELLKELKPGGRLIVPVGPEGANQVLMQYDKTSDG-NIIETQ 227
Query: 181 VRGVRTNPL 189
+ GV PL
Sbjct: 228 LMGVIYVPL 236
|
Source: Taeniopygia guttata Species: Taeniopygia guttata Genus: Taeniopygia Family: Estrildidae Order: Passeriformes Class: Aves Phylum: Chordata Superkingdom: Eukaryota |
| >gi|357618961|gb|EHJ71745.1| L-isoaspartyl protein carboxyl methyltransferase [Danaus plexippus] | Back alignment and taxonomy information |
|---|
Score = 175 bits (444), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 87/177 (49%), Positives = 117/177 (66%), Gaps = 3/177 (1%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSG 60
M VDRKN+ PY + IG+ A IS+PH+HA LE LK+++ PG + LD+GSG
Sbjct: 32 MSAVDRKNYCPYA---PYHDSPQSIGFAATISAPHMHAHALERLKNQLVPGEKALDVGSG 88
Query: 61 SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE 120
SGYLTAC+A+M G GRV G+EH+ EL + KNI+ N +LL R++ +V +G+ GY
Sbjct: 89 SGYLTACMAHMVGESGRVIGIEHIPELVTLATKNINHDNPKLLSSERIRLIVGDGRLGYP 148
Query: 121 REAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYTIV 177
EAPY+ IHV + T+PQ L++QL PGGR+V+PVG Q LT +DK DG T V
Sbjct: 149 SEAPYNAIHVGAAAPTLPQALVEQLKPGGRLVVPVGPEGGDQYLTQVDKALDGSTTV 205
|
Source: Danaus plexippus Species: Danaus plexippus Genus: Danaus Family: Nymphalidae Order: Lepidoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 204 | ||||||
| UNIPROTKB|E1BXJ0 | 228 | LOC423008 "Protein-L-isoaspart | 0.833 | 0.745 | 0.497 | 2.8e-41 | |
| ZFIN|ZDB-GENE-040426-1738 | 249 | pcmtl "l-isoaspartyl protein c | 0.833 | 0.682 | 0.491 | 1.6e-40 | |
| UNIPROTKB|G3MZZ6 | 228 | PCMT1 "Protein-L-isoaspartate | 0.833 | 0.745 | 0.502 | 2.6e-40 | |
| UNIPROTKB|P15246 | 227 | PCMT1 "Protein-L-isoaspartate( | 0.833 | 0.748 | 0.502 | 2.6e-40 | |
| UNIPROTKB|J9JIK8 | 208 | PCMT1 "Protein-L-isoaspartate | 0.833 | 0.817 | 0.502 | 2.6e-40 | |
| UNIPROTKB|P80895 | 227 | PCMT1 "Protein-L-isoaspartate( | 0.833 | 0.748 | 0.502 | 2.6e-40 | |
| ZFIN|ZDB-GENE-990415-134 | 266 | pcmt "l-isoaspartyl protein ca | 0.833 | 0.639 | 0.485 | 6.8e-40 | |
| UNIPROTKB|F1NJV4 | 197 | PCMT1 "Protein-L-isoaspartate | 0.833 | 0.862 | 0.479 | 8.7e-40 | |
| UNIPROTKB|Q5F3N1 | 228 | PCMT1 "Protein-L-isoaspartate( | 0.833 | 0.745 | 0.479 | 8.7e-40 | |
| UNIPROTKB|E2R3G3 | 286 | PCMT1 "Protein-L-isoaspartate | 0.833 | 0.594 | 0.497 | 1.8e-39 |
| UNIPROTKB|E1BXJ0 LOC423008 "Protein-L-isoaspartate O-methyltransferase" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 438 (159.2 bits), Expect = 2.8e-41, P = 2.8e-41
Identities = 86/173 (49%), Positives = 114/173 (65%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSG 60
+L DR ++ PY + IGY A IS+PH+HA LELLKD++ GA+ LD+GSG
Sbjct: 32 LLATDRGHYIKYF---PYMDSPQSIGYKATISAPHMHAHALELLKDQLVEGAKALDVGSG 88
Query: 61 SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE 120
SGYLTAC A M GP G+ GVEH+ EL SI+N+ + + LL GRV+ VV +G+ GY
Sbjct: 89 SGYLTACFARMVGPTGKAVGVEHIKELVNESIRNVKEDDPTLLSSGRVKLVVGDGRQGYP 148
Query: 121 REAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADG 173
EAPYD IHV + T+PQ+LL++L PGGR+++PVG Q L DK +DG
Sbjct: 149 EEAPYDAIHVGAAAPTVPQELLNELKPGGRLILPVGPEGANQVLMQYDKTSDG 201
|
|
| ZFIN|ZDB-GENE-040426-1738 pcmtl "l-isoaspartyl protein carboxyl methyltransferase, like" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
Identities = 85/173 (49%), Positives = 116/173 (67%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSG 60
ML DR ++R + PY + IGY A IS+PH+HA LE+L DK+ GA LD+GSG
Sbjct: 53 MLATDR-GIYSR--DHPYADSPQSIGYKATISAPHMHAHALEVLSDKLTEGASALDVGSG 109
Query: 61 SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE 120
SGYLTAC A M GP G+V G++H+ +L +SS+KN+ + ELL GR++ VV +G+ G+
Sbjct: 110 SGYLTACFARMVGPSGKVVGIDHIDQLVQSSVKNVQADDPELLATGRIKLVVGDGRFGFP 169
Query: 121 REAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADG 173
EAPYD IHV + T+P+ LL+QL PGGR+V+PVG Q L D+ +DG
Sbjct: 170 DEAPYDAIHVGAAAPTLPKALLEQLKPGGRLVLPVGPEGGSQVLEQYDRQSDG 222
|
|
| UNIPROTKB|G3MZZ6 PCMT1 "Protein-L-isoaspartate O-methyltransferase" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 429 (156.1 bits), Expect = 2.6e-40, P = 2.6e-40
Identities = 87/173 (50%), Positives = 112/173 (64%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSG 60
ML DR ++ N PY + IG+ A IS+PH+HA LELL D++ GA+ LD+GSG
Sbjct: 32 MLATDRSHYAK--CN-PYMDSPQSIGFQATISAPHMHAYALELLFDQLNEGAKALDVGSG 88
Query: 61 SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE 120
SG LTAC A M GP G+V G++H+ EL + SI N+ K + LL GRVQ VV +G+ GY
Sbjct: 89 SGILTACFARMVGPSGKVIGIDHIKELVDDSINNVRKDDPMLLSSGRVQLVVGDGRMGYA 148
Query: 121 REAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADG 173
EAPYD IHV + +PQ L+DQL PGGR+++PVG Q L DKL DG
Sbjct: 149 AEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDG 201
|
|
| UNIPROTKB|P15246 PCMT1 "Protein-L-isoaspartate(D-aspartate) O-methyltransferase" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 429 (156.1 bits), Expect = 2.6e-40, P = 2.6e-40
Identities = 87/173 (50%), Positives = 112/173 (64%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSG 60
ML DR ++ N PY + IG+ A IS+PH+HA LELL D++ GA+ LD+GSG
Sbjct: 32 MLATDRSHYAK--CN-PYMDSPQSIGFQATISAPHMHAYALELLFDQLNEGAKALDVGSG 88
Query: 61 SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE 120
SG LTAC A M GP G+V G++H+ EL + SI N+ K + LL GRVQ VV +G+ GY
Sbjct: 89 SGILTACFARMVGPSGKVIGIDHIKELVDDSINNVRKDDPMLLSSGRVQLVVGDGRMGYA 148
Query: 121 REAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADG 173
EAPYD IHV + +PQ L+DQL PGGR+++PVG Q L DKL DG
Sbjct: 149 AEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDG 201
|
|
| UNIPROTKB|J9JIK8 PCMT1 "Protein-L-isoaspartate O-methyltransferase" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 429 (156.1 bits), Expect = 2.6e-40, P = 2.6e-40
Identities = 87/173 (50%), Positives = 112/173 (64%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSG 60
ML DR ++ N PY + IG+ A IS+PH+HA LELL D++ GA+ LD+GSG
Sbjct: 13 MLATDRSHYAK--CN-PYMDSPQSIGFQATISAPHMHAYALELLFDQLHEGAKALDVGSG 69
Query: 61 SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE 120
SG LTAC A M GP G+V G++H+ EL + SI N+ K + LL GRVQ VV +G+ GY
Sbjct: 70 SGILTACFARMVGPSGKVIGIDHIKELVDDSINNVRKDDPMLLSSGRVQLVVGDGRMGYA 129
Query: 121 REAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADG 173
EAPYD IHV + +PQ L+DQL PGGR+++PVG Q L DKL DG
Sbjct: 130 EEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDG 182
|
|
| UNIPROTKB|P80895 PCMT1 "Protein-L-isoaspartate(D-aspartate) O-methyltransferase" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 429 (156.1 bits), Expect = 2.6e-40, P = 2.6e-40
Identities = 87/173 (50%), Positives = 112/173 (64%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSG 60
ML DR ++ N PY + IG+ A IS+PH+HA LELL D++ GA+ LD+GSG
Sbjct: 32 MLATDRSHYAK--CN-PYMDSPQSIGFQATISAPHMHAYALELLFDQLHEGAKALDVGSG 88
Query: 61 SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE 120
SG LTAC A M GP G+V G++H+ EL + SI N+ K + LL GRVQ VV +G+ GY
Sbjct: 89 SGILTACFARMVGPSGKVIGIDHIKELVDDSINNVRKDDPMLLSSGRVQLVVGDGRMGYA 148
Query: 121 REAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADG 173
EAPYD IHV + +PQ L+DQL PGGR+++PVG Q L DKL DG
Sbjct: 149 EEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDG 201
|
|
| ZFIN|ZDB-GENE-990415-134 pcmt "l-isoaspartyl protein carboxyl methyltransferase" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
Identities = 84/173 (48%), Positives = 112/173 (64%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSG 60
ML DR +F +R PY + IGY A IS+PH+HA LELL D + GA+ LD+GSG
Sbjct: 70 MLATDRSHF-SRC--NPYMDSPQSIGYQATISAPHMHAYALELLHDHLYEGAKALDVGSG 126
Query: 61 SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE 120
SG L+ C + M GP G+V G++H+ EL E SI N+ K + L+ GR++ +V +G+ G+
Sbjct: 127 SGILSVCFSRMVGPTGKVIGIDHIKELVEDSIANVKKDDPSLITSGRIKLIVGDGRMGFT 186
Query: 121 REAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADG 173
EAPYD IHV + T+PQ LLDQL PGGR+++PVG Q L DKL DG
Sbjct: 187 EEAPYDAIHVGAAAPTVPQALLDQLKPGGRLILPVGPAGGNQMLEQYDKLEDG 239
|
|
| UNIPROTKB|F1NJV4 PCMT1 "Protein-L-isoaspartate O-methyltransferase" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
Identities = 83/173 (47%), Positives = 112/173 (64%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSG 60
ML DR ++ PY + IG+ A IS+PH+HA LELL D++ GA+ LD+GSG
Sbjct: 1 MLATDRCHY---AKYNPYMDSPQSIGFQATISAPHMHAYALELLSDQLHEGAKALDVGSG 57
Query: 61 SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE 120
SG LTAC + M GP+G+V G++H+ EL + SI N+ K + LL GRV+ +V +G+ GY
Sbjct: 58 SGILTACFSRMVGPKGQVVGIDHIKELVDDSINNVKKDDPTLLSSGRVKLIVGDGRMGYA 117
Query: 121 REAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADG 173
EAPYD IHV + +PQ L+DQL PGGR+++PVG Q L DKL DG
Sbjct: 118 EEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQMLEQYDKLEDG 170
|
|
| UNIPROTKB|Q5F3N1 PCMT1 "Protein-L-isoaspartate(D-aspartate) O-methyltransferase" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
Identities = 83/173 (47%), Positives = 112/173 (64%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSG 60
ML DR ++ PY + IG+ A IS+PH+HA LELL D++ GA+ LD+GSG
Sbjct: 32 MLATDRCHY---AKYNPYMDSPQSIGFQATISAPHMHAYALELLSDQLHEGAKALDVGSG 88
Query: 61 SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE 120
SG LTAC + M GP+G+V G++H+ EL + SI N+ K + LL GRV+ +V +G+ GY
Sbjct: 89 SGILTACFSRMVGPKGQVVGIDHIKELVDDSINNVKKDDPTLLSSGRVKLIVGDGRMGYA 148
Query: 121 REAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADG 173
EAPYD IHV + +PQ L+DQL PGGR+++PVG Q L DKL DG
Sbjct: 149 EEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQMLEQYDKLEDG 201
|
|
| UNIPROTKB|E2R3G3 PCMT1 "Protein-L-isoaspartate O-methyltransferase" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
Identities = 86/173 (49%), Positives = 111/173 (64%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSG 60
ML DR ++ N PY + IG+ A IS+PH+HA LELL D++ GA+ LD+GSG
Sbjct: 90 MLATDRSHYAK--CN-PYMDSPQSIGFQATISAPHMHAYALELLFDQLHEGAKALDVGSG 146
Query: 61 SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE 120
SG LTAC A M G G+V G++H+ EL + SI N+ K + LL GRVQ VV +G+ GY
Sbjct: 147 SGILTACFARMVGSSGKVIGIDHIKELVDDSINNVRKDDPVLLSSGRVQLVVGDGRMGYA 206
Query: 121 REAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADG 173
EAPYD IHV + +PQ L+DQL PGGR+++PVG Q L DKL DG
Sbjct: 207 EEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDG 259
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q7NJY2 | PIMT_GLOVI | 2, ., 1, ., 1, ., 7, 7 | 0.355 | 0.8872 | 0.8829 | yes | N/A |
| A7HL14 | PIMT_FERNB | 2, ., 1, ., 1, ., 7, 7 | 0.3736 | 0.8774 | 0.8994 | yes | N/A |
| A7MTT6 | PIMT_VIBHB | 2, ., 1, ., 1, ., 7, 7 | 0.3563 | 0.8480 | 0.8317 | yes | N/A |
| Q8ZYN0 | PIMT_PYRAE | 2, ., 1, ., 1, ., 7, 7 | 0.4068 | 0.6764 | 0.6731 | yes | N/A |
| Q57636 | PIMT_METJA | 2, ., 1, ., 1, ., 7, 7 | 0.3672 | 0.8186 | 0.7767 | yes | N/A |
| O27962 | PIMT2_ARCFU | 2, ., 1, ., 1, ., 7, 7 | 0.4025 | 0.7352 | 0.6849 | yes | N/A |
| A2BKH8 | PIMT_HYPBU | 2, ., 1, ., 1, ., 7, 7 | 0.3756 | 0.8137 | 0.6887 | yes | N/A |
| A3MY16 | PIMT_PYRCJ | 2, ., 1, ., 1, ., 7, 7 | 0.3827 | 0.7205 | 0.7101 | yes | N/A |
| Q8DC56 | PIMT_VIBVU | 2, ., 1, ., 1, ., 7, 7 | 0.3510 | 0.8480 | 0.8317 | yes | N/A |
| Q27873 | PIMT_CAEEL | 2, ., 1, ., 1, ., 7, 7 | 0.4411 | 0.8186 | 0.7422 | yes | N/A |
| Q8TYL4 | PIMT_METKA | 2, ., 1, ., 1, ., 7, 7 | 0.3965 | 0.8137 | 0.7345 | yes | N/A |
| A1RSC6 | PIMT_PYRIL | 2, ., 1, ., 1, ., 7, 7 | 0.3850 | 0.7745 | 0.7632 | yes | N/A |
| B8E0T1 | PIMT_DICTD | 2, ., 1, ., 1, ., 7, 7 | 0.3885 | 0.7156 | 0.6636 | yes | N/A |
| B4RZG8 | PIMT_ALTMD | 2, ., 1, ., 1, ., 7, 7 | 0.3297 | 0.8431 | 0.8151 | yes | N/A |
| A8AAV7 | PIMT_IGNH4 | 2, ., 1, ., 1, ., 7, 7 | 0.3728 | 0.8284 | 0.8009 | yes | N/A |
| Q8TT94 | PIMT2_METAC | 2, ., 1, ., 1, ., 7, 7 | 0.3850 | 0.8039 | 0.6890 | yes | N/A |
| A2SF76 | PIMT_METPP | 2, ., 1, ., 1, ., 7, 7 | 0.3678 | 0.8823 | 0.6691 | yes | N/A |
| P15246 | PIMT_BOVIN | 2, ., 1, ., 1, ., 7, 7 | 0.4572 | 0.9558 | 0.8590 | yes | N/A |
| Q9URZ1 | PIMT_SCHPO | 2, ., 1, ., 1, ., 7, 7 | 0.3820 | 0.8235 | 0.7304 | yes | N/A |
| A0LM89 | PIMT2_SYNFM | 2, ., 1, ., 1, ., 7, 7 | 0.3785 | 0.8039 | 0.6639 | yes | N/A |
| Q87LQ6 | PIMT_VIBPA | 2, ., 1, ., 1, ., 7, 7 | 0.3621 | 0.8333 | 0.8173 | yes | N/A |
| B6YX51 | PIMT_THEON | 2, ., 1, ., 1, ., 7, 7 | 0.375 | 0.7205 | 0.6681 | yes | N/A |
| Q123X2 | PIMT2_POLSJ | 2, ., 1, ., 1, ., 7, 7 | 0.3693 | 0.8088 | 0.7819 | yes | N/A |
| Q74CZ5 | PIMT_GEOSL | 2, ., 1, ., 1, ., 7, 7 | 0.3965 | 0.7941 | 0.7826 | yes | N/A |
| Q0VQD1 | PIMT_ALCBS | 2, ., 1, ., 1, ., 7, 7 | 0.3575 | 0.8186 | 0.7590 | yes | N/A |
| P80895 | PIMT_PIG | 2, ., 1, ., 1, ., 7, 7 | 0.4572 | 0.9558 | 0.8590 | yes | N/A |
| Q0KB67 | PIMT1_CUPNH | 2, ., 1, ., 1, ., 7, 7 | 0.3612 | 0.8676 | 0.6833 | yes | N/A |
| P22062 | PIMT_RAT | 2, ., 1, ., 1, ., 7, 7 | 0.4422 | 0.9558 | 0.8590 | yes | N/A |
| Q0W2W0 | PIMT_UNCMA | 2, ., 1, ., 1, ., 7, 7 | 0.3631 | 0.8725 | 0.9468 | yes | N/A |
| Q12UV0 | PIMT_METBU | 2, ., 1, ., 1, ., 7, 7 | 0.3959 | 0.6862 | 0.6896 | yes | N/A |
| Q2YCR1 | PIMT1_NITMU | 2, ., 1, ., 1, ., 7, 7 | 0.3736 | 0.8725 | 0.7542 | yes | N/A |
| Q8PW90 | PIMT_METMA | 2, ., 1, ., 1, ., 7, 7 | 0.3949 | 0.7303 | 0.6131 | yes | N/A |
| Q7MHQ8 | PIMT_VIBVY | 2, ., 1, ., 1, ., 7, 7 | 0.3510 | 0.8480 | 0.8317 | yes | N/A |
| A0B9U1 | PIMT_METTP | 2, ., 1, ., 1, ., 7, 7 | 0.3757 | 0.7990 | 0.7761 | yes | N/A |
| Q27869 | PIMT_DROME | 2, ., 1, ., 1, ., 7, 7 | 0.4123 | 0.9068 | 0.8185 | yes | N/A |
| O26915 | PIMT_METTH | 2, ., 1, ., 1, ., 7, 7 | 0.3465 | 0.8186 | 0.7695 | yes | N/A |
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | 0.766 |
| 4th Layer | 2.1.1.77 | 0.824 |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 204 | |||
| pfam01135 | 210 | pfam01135, PCMT, Protein-L-isoaspartate(D-aspartat | 1e-58 | |
| TIGR00080 | 215 | TIGR00080, pimt, protein-L-isoaspartate(D-aspartat | 3e-44 | |
| COG2518 | 209 | COG2518, Pcm, Protein-L-isoaspartate carboxylmethy | 1e-43 | |
| PRK13942 | 212 | PRK13942, PRK13942, protein-L-isoaspartate O-methy | 3e-34 | |
| PRK00312 | 212 | PRK00312, pcm, protein-L-isoaspartate O-methyltran | 2e-33 | |
| PRK13944 | 205 | PRK13944, PRK13944, protein-L-isoaspartate O-methy | 2e-28 | |
| TIGR04364 | 394 | TIGR04364, methyltran_FxLD, methyltransferase, FxL | 9e-22 | |
| PRK13943 | 322 | PRK13943, PRK13943, protein-L-isoaspartate O-methy | 3e-14 | |
| TIGR04188 | 363 | TIGR04188, methyltr_grsp, methyltransferase, ATP-g | 3e-11 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 2e-10 | |
| COG2519 | 256 | COG2519, GCD14, tRNA(1-methyladenosine) methyltran | 7e-10 | |
| pfam13847 | 151 | pfam13847, Methyltransf_31, Methyltransferase doma | 1e-09 | |
| pfam13659 | 117 | pfam13659, Methyltransf_26, Methyltransferase doma | 3e-08 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 3e-07 | |
| PRK08317 | 241 | PRK08317, PRK08317, hypothetical protein; Provisio | 1e-06 | |
| COG2242 | 187 | COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme | 2e-06 | |
| pfam01209 | 233 | pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransf | 4e-06 | |
| pfam08704 | 309 | pfam08704, GCD14, tRNA methyltransferase complex G | 8e-06 | |
| TIGR02469 | 124 | TIGR02469, CbiT, precorrin-6Y C5,15-methyltransfer | 2e-05 | |
| COG4122 | 219 | COG4122, COG4122, Predicted O-methyltransferase [G | 2e-05 | |
| TIGR02752 | 231 | TIGR02752, MenG_heptapren, demethylmenaquinone met | 4e-05 | |
| PRK00377 | 198 | PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltr | 4e-05 | |
| PRK14968 | 188 | PRK14968, PRK14968, putative methyltransferase; Pr | 1e-04 | |
| COG2890 | 280 | COG2890, HemK, Methylase of polypeptide chain rele | 1e-04 | |
| COG2264 | 300 | COG2264, PrmA, Ribosomal protein L11 methylase [Tr | 2e-04 | |
| PRK11873 | 272 | PRK11873, arsM, arsenite S-adenosylmethyltransfera | 2e-04 | |
| COG4798 | 238 | COG4798, COG4798, Predicted methyltransferase [Gen | 5e-04 | |
| pfam01269 | 229 | pfam01269, Fibrillarin, Fibrillarin | 5e-04 | |
| COG2230 | 283 | COG2230, Cfa, Cyclopropane fatty acid synthase and | 8e-04 | |
| TIGR02021 | 219 | TIGR02021, BchM-ChlM, magnesium protoporphyrin O-m | 8e-04 | |
| pfam13489 | 154 | pfam13489, Methyltransf_23, Methyltransferase doma | 0.001 | |
| PTZ00146 | 293 | PTZ00146, PTZ00146, fibrillarin; Provisional | 0.001 | |
| TIGR02072 | 240 | TIGR02072, BioC, biotin biosynthesis protein BioC | 0.002 | |
| COG2263 | 198 | COG2263, COG2263, Predicted RNA methylase [Transla | 0.002 | |
| pfam06325 | 294 | pfam06325, PrmA, Ribosomal protein L11 methyltrans | 0.002 | |
| pfam08242 | 98 | pfam08242, Methyltransf_12, Methyltransferase doma | 0.004 | |
| pfam01728 | 177 | pfam01728, FtsJ, FtsJ-like methyltransferase | 0.004 |
| >gnl|CDD|216320 pfam01135, PCMT, Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) | Back alignment and domain information |
|---|
Score = 182 bits (465), Expect = 1e-58
Identities = 87/190 (45%), Positives = 111/190 (58%), Gaps = 10/190 (5%)
Query: 1 MLRVDRKNFFTRVVNE-PYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGS 59
ML VDR+ F Y IGYG IS+PH+HA MLELL+ +KPG R+L+IGS
Sbjct: 25 MLAVDREEFVPESFKSYAYEDIPLSIGYGQTISAPHMHAMMLELLE--LKPGMRVLEIGS 82
Query: 60 GSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY 119
GSGYLTAC A M G G V +EH+ EL E + +N++K L V VV +G+ G+
Sbjct: 83 GSGYLTACFARMVGEVGLVVSIEHIPELVEIARRNLEK-----LGLENVIVVVGDGRQGW 137
Query: 120 EREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYTIVTT 179
APYD IHV + IP+ L+DQL GGR+V+PVG Q L DK DG ++
Sbjct: 138 PEFAPYDAIHVGAAAPEIPEALIDQLKEGGRLVIPVGPNGN-QVLQQFDKRNDGSVVIKD 196
Query: 180 VVRGVRTNPL 189
+ GVR PL
Sbjct: 197 LE-GVRFVPL 205
|
Length = 210 |
| >gnl|CDD|232816 TIGR00080, pimt, protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Score = 146 bits (370), Expect = 3e-44
Identities = 75/190 (39%), Positives = 104/190 (54%), Gaps = 12/190 (6%)
Query: 1 MLRVDRKNFFTRVVNE-PYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGS 59
+L V R+ F E Y +IGYG IS+PH+ A M ELL+ +KPG ++L+IG+
Sbjct: 29 LLSVPREEFVPEHFKEYAYVDTPLEIGYGQTISAPHMVAMMTELLE--LKPGMKVLEIGT 86
Query: 60 GSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY 119
GSGY A LA + G +G V +E + ELAE + + + K L V +V +G G+
Sbjct: 87 GSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRK-----LGLDNVIVIVGDGTQGW 141
Query: 120 EREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYTIVTT 179
E APYD I+V+ + IP+ L+DQL GG +VMPVGE Q L +K I+
Sbjct: 142 EPLAPYDRIYVTAAGPKIPEALIDQLKEGGILVMPVGE--YLQVLKRAEKRGG--EIIIK 197
Query: 180 VVRGVRTNPL 189
V V PL
Sbjct: 198 DVEPVAFVPL 207
|
This is an all-kingdom (but not all species) full-length ortholog enzyme for repairing aging proteins. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt [Protein fate, Protein modification and repair]. Length = 215 |
| >gnl|CDD|225316 COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 144 bits (366), Expect = 1e-43
Identities = 71/168 (42%), Positives = 95/168 (56%), Gaps = 12/168 (7%)
Query: 25 IGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHV 84
IG G IS+PH+ A+ML+LL+ +KPG R+L+IG+GSGY A LA + G RV +E +
Sbjct: 49 IGCGQTISAPHMVARMLQLLE--LKPGDRVLEIGTGSGYQAAVLARLVG---RVVSIERI 103
Query: 85 MELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIPQKLLDQ 144
ELAE + +N+ E L V +G G+ EAPYD I V+ + +P+ LLDQ
Sbjct: 104 EELAEQARRNL-----ETLGYENVTVRHGDGSKGWPEEAPYDRIIVTAAAPEVPEALLDQ 158
Query: 145 LVPGGRMVMPVGEPFKGQNLTIIDKLADGYTIVTTVVRGVRTNPLYRD 192
L PGGR+V+PVG Q L I K DG + VR PL
Sbjct: 159 LKPGGRLVIPVGSGPA-QRLLRITKDGDG-NFERRDLFNVRFVPLVGG 204
|
Length = 209 |
| >gnl|CDD|184409 PRK13942, PRK13942, protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 3e-34
Identities = 71/191 (37%), Positives = 103/191 (53%), Gaps = 12/191 (6%)
Query: 1 MLRVDRKNFF-TRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGS 59
+L+V R F + Y +IGYG IS+ H+ A M ELL +K G ++L+IG+
Sbjct: 28 LLKVPRHLFVPEYLEEYAYVDTPLEIGYGQTISAIHMVAIMCELLD--LKEGMKVLEIGT 85
Query: 60 GSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY 119
GSGY A +A + G G+V +E + ELAE + K + K L V+ +V +G GY
Sbjct: 86 GSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKK-----LGYDNVEVIVGDGTLGY 140
Query: 120 EREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYTIVTT 179
E APYD I+V+ + IP+ L++QL GG MV+PVG Q L ++K D I+
Sbjct: 141 EENAPYDRIYVTAAGPDIPKPLIEQLKDGGIMVIPVGSYS--QELIRVEK--DNGKIIKK 196
Query: 180 VVRGVRTNPLY 190
+ V PL
Sbjct: 197 KLGEVAFVPLI 207
|
Length = 212 |
| >gnl|CDD|178974 PRK00312, pcm, protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 118 bits (299), Expect = 2e-33
Identities = 65/194 (33%), Positives = 98/194 (50%), Gaps = 22/194 (11%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQ-----IGYGADISSPHIHAQMLELLKDKIKPGARIL 55
+ R+ F V E ++ K+ + IG G IS P++ A+M ELL+ +KPG R+L
Sbjct: 30 IEATPRELF----VPEAFKHKAYENRALPIGCGQTISQPYMVARMTELLE--LKPGDRVL 83
Query: 56 DIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNG 115
+IG+GSGY A LA++ RV+ VE + L + + + + L V +G
Sbjct: 84 EIGTGSGYQAAVLAHLVR---RVFSVERIKTLQWEAKRRLKQ-----LGLHNVSVRHGDG 135
Query: 116 KHGYEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYT 175
G+ AP+D I V+ + IP+ LL+QL GG +V PVG + Q LT + K
Sbjct: 136 WKGWPAYAPFDRILVTAAAPEIPRALLEQLKEGGILVAPVGGEEQ-QLLTRVRKRGGR-- 192
Query: 176 IVTTVVRGVRTNPL 189
V+ VR PL
Sbjct: 193 FEREVLEEVRFVPL 206
|
Length = 212 |
| >gnl|CDD|140001 PRK13944, PRK13944, protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 2e-28
Identities = 69/178 (38%), Positives = 100/178 (56%), Gaps = 16/178 (8%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQ-----IGYGADISSPHIHAQMLELLKDKIKPGARIL 55
ML V R+ F V+ E YR+ + + + GA IS+PH+ A M EL++ + PG +IL
Sbjct: 24 MLSVPREEF---VMPE-YRMMAYEDRPLPLFAGATISAPHMVAMMCELIEPR--PGMKIL 77
Query: 56 DIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNG 115
++G+GSGY A A G+VY VE V ELA + +NI++ L G V+ +G
Sbjct: 78 EVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIER----LGYWGVVEVYHGDG 133
Query: 116 KHGYEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADG 173
K G E+ AP+D I V+ + TIP L+ QL GG +V+PV E GQ L + K +
Sbjct: 134 KRGLEKHAPFDAIIVTAAASTIPSALVRQLKDGGVLVIPVEEGV-GQVLYKVVKRGEK 190
|
Length = 205 |
| >gnl|CDD|234563 TIGR04364, methyltran_FxLD, methyltransferase, FxLD system | Back alignment and domain information |
|---|
Score = 91.3 bits (227), Expect = 9e-22
Identities = 48/128 (37%), Positives = 68/128 (53%), Gaps = 14/128 (10%)
Query: 31 ISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAES 90
+S+PHI A MLE ++PG R+L+IGSG GY A LA + GP G V V+ ++ +
Sbjct: 65 VSAPHIQAMMLEQAG--VEPGMRVLEIGSG-GYNAALLAELVGPSGEVTTVDIDEDVTD- 120
Query: 91 SIKNIDKGNSELLDQ---GRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIPQKLLDQLVP 147
L +V V+ + + G APYD I V+ + IP LDQL P
Sbjct: 121 -------RARACLAAAGYPQVTVVLADAEAGVPELAPYDRIIVTVGAWDIPPAWLDQLAP 173
Query: 148 GGRMVMPV 155
GGR+V+P+
Sbjct: 174 GGRLVVPL 181
|
Members of this family resemble occur regularly in the vicinity of lantibiotic biosynthesis enzymes and their probable target, the FxLD family of putative ribosomal natural product precursor (TIGR04363). Members resemble protein-L-isoaspartate O-methyltransferase (TIGR00080) and a predicted methyltranserase, TIGR04188, of another putative peptide modification system. Length = 394 |
| >gnl|CDD|237568 PRK13943, PRK13943, protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 69.5 bits (170), Expect = 3e-14
Identities = 53/174 (30%), Positives = 82/174 (47%), Gaps = 20/174 (11%)
Query: 2 LRVDRKNFFTR-----VVNEPYRIKSRQIGYGADISS-PHIHAQMLELLKDKIKPGARIL 55
L V R+ F T+ V E + S G SS P + A +E + + G R+L
Sbjct: 28 LEVPREEFLTKSYPLSYVYEDIVLVSYDDGEEYSTSSQPSLMALFMEWVG--LDKGMRVL 85
Query: 56 DIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNG 115
+IG G+GY A ++ + G +G V VE+ ++ E I K N L V FV +G
Sbjct: 86 EIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICE-----IAKRNVRRLGIENVIFVCGDG 140
Query: 116 KHGYEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPFKGQNLTIIDK 169
+G APYD+I V+ +P+ QL GGR+++P+ NL + +
Sbjct: 141 YYGVPEFAPYDVIFVTVGVDEVPETWFTQLKEGGRVIVPI-------NLKLSRR 187
|
Length = 322 |
| >gnl|CDD|234492 TIGR04188, methyltr_grsp, methyltransferase, ATP-grasp peptide maturase system | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 3e-11
Identities = 41/152 (26%), Positives = 68/152 (44%), Gaps = 18/152 (11%)
Query: 11 TRVVNEPYRIKSRQIGYGADISS---PHIHAQMLELLKDKIKPGARILDIGSGSGYLTAC 67
T++ + + G SS P + A+MLE L ++ G R+L+IG+G+GY A
Sbjct: 67 TQLDGDLAADAAGGPVTGRPTSSSTQPSLVARMLEALD--VEDGHRVLEIGTGTGYSAAL 124
Query: 68 LAYMAGPEGRVYGVE---HVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAP 124
L + G + V VE + A S++ G + + V +G G+ AP
Sbjct: 125 LCHRLG-DDNVTSVEVDPGLAARAASALAAA--GYAPTV-------VTGDGLLGHPPRAP 174
Query: 125 YDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVG 156
YD I + + +P L Q PGG ++ +
Sbjct: 175 YDRIIATCAVRRVPPAWLRQTRPGGVILTTLS 206
|
Members of this protein family are predicted SAM-dependent methyltransferases that regularly occur in the context of a putative peptide modification ATP-grasp enzyme (TIGR04187, related to enzymes of microviridin maturation) and a putative ribosomal peptide modification target (TIGR04186). Length = 363 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 2e-10
Identities = 30/107 (28%), Positives = 45/107 (42%), Gaps = 9/107 (8%)
Query: 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQ 109
PGAR+LDIG G+G L P RV GV+ E+ E + +N R+
Sbjct: 1 PGARVLDIGCGTGSLAI-ELARLFPGARVTGVDLSPEMLELARENAKLALGP-----RIT 54
Query: 110 FVVWNGKHGYEREAPYDIIHVSPSYFTIP---QKLLDQLVPGGRMVM 153
FV + + +D + + + L L PGGR+V+
Sbjct: 55 FVQGDAPDALDLLEGFDAVFIGGGGGDLLELLDALASLLKPGGRLVL 101
|
Protein in this family function as methyltransferases. Length = 104 |
| >gnl|CDD|225317 COG2519, GCD14, tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 7e-10
Identities = 41/130 (31%), Positives = 63/130 (48%), Gaps = 14/130 (10%)
Query: 24 QIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEH 83
QI Y D +I A + I PG+R+L+ G+GSG LTA LA GPEG V E
Sbjct: 76 QIIYPKDAG--YIVA------RLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEI 127
Query: 84 VMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVS-PSYFTIPQKLL 142
+ A+++ +N+ SE RV + + + E D + + P + + + +
Sbjct: 128 REDFAKTARENL----SEFGLGDRVTLKLGDVRE-GIDEEDVDAVFLDLPDPWNVLEHVS 182
Query: 143 DQLVPGGRMV 152
D L PGG +V
Sbjct: 183 DALKPGGVVV 192
|
Length = 256 |
| >gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 1e-09
Identities = 30/116 (25%), Positives = 59/116 (50%), Gaps = 16/116 (13%)
Query: 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGR 107
+K G ++LD+G G+GYLT LA GP V G+ +++E +I+ K N++ L
Sbjct: 1 LKSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGI----DISEEAIEK-AKENAKKLGYEN 55
Query: 108 VQFVVWN----GKHGYEREAPYDIIHVSPSYFTIP------QKLLDQLVPGGRMVM 153
V+F+ + + E +D++ + +P ++++ L PGG +++
Sbjct: 56 VEFIQGDIEELPQLQLEDN-SFDVVISNEVLNHLPDPDKVLEEIIRVLKPGGVLIV 110
|
This family appears to be have methyltransferase activity. Length = 151 |
| >gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 3e-08
Identities = 31/118 (26%), Positives = 47/118 (39%), Gaps = 20/118 (16%)
Query: 51 GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQF 110
G R+LD G+GSG A AGP+ RV GV EL + + + RV+
Sbjct: 1 GDRVLDPGAGSGAFLLAAA-RAGPDARVVGV----ELDPEAAALARRRLALAGLAPRVRV 55
Query: 111 VVWNG-KHGYEREAPYDIIHVSPSYFTIP--------------QKLLDQLVPGGRMVM 153
VV + + + +D++ +P Y L L PGG +V+
Sbjct: 56 VVGDARELLELPDGSFDLVLGNPPYGPRAGDPKDNRDLYDRFLAAALRLLKPGGVLVV 113
|
This family contains methyltransferase domains. Length = 117 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 3e-07
Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 15/111 (13%)
Query: 53 RILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVV 112
R+LD+G G+G L LA +GP RV GV +++ +++ K + LL V+ +
Sbjct: 1 RVLDLGCGTGALA--LALASGPGARVTGV----DISPVALELARKAAAALLAD-NVEVLK 53
Query: 113 WNGKHG-YEREAPYDIIHVSPSYFTIP-------QKLLDQLVPGGRMVMPV 155
+ + E + +D+I P + ++ L PGG +V+ +
Sbjct: 54 GDAEELPPEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLTL 104
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
| >gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 1e-06
Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 18/115 (15%)
Query: 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV---EHVMELAESSIKNIDKGNSELLD 104
++PG R+LD+G G G LA GPEGRV G+ E ++ LA+
Sbjct: 17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG---------L 67
Query: 105 QGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTI--PQKLLDQLV----PGGRMVM 153
V+FV + + +D + + P + L ++ PGGR+V+
Sbjct: 68 GPNVEFVRGDADGLPFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVV 122
|
Length = 241 |
| >gnl|CDD|225151 COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 2e-06
Identities = 34/125 (27%), Positives = 54/125 (43%), Gaps = 10/125 (8%)
Query: 31 ISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAES 90
++ I A L L+ +PG R+ DIG+G+G +T A AGP GRV +E E E
Sbjct: 17 MTKEEIRALTLSKLR--PRPGDRLWDIGAGTGSITIEWAL-AGPSGRVIAIERDEEALEL 73
Query: 91 SIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHV--SPSYFTIPQKLLDQLVPG 148
+N + ++ V + D I + + I + ++L PG
Sbjct: 74 IERNAAR-----FGVDNLEVVEGDAPEALPDLPSPDAIFIGGGGNIEEILEAAWERLKPG 128
Query: 149 GRMVM 153
GR+V
Sbjct: 129 GRLVA 133
|
Length = 187 |
| >gnl|CDD|110227 pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferase family | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 4e-06
Identities = 38/138 (27%), Positives = 61/138 (44%), Gaps = 27/138 (19%)
Query: 30 DISSPHIHAQMLELLKDKI------KPGARILDIGSGSGYLTACLAYMAGPEGRVYGV-- 81
D+ S IH L KD K G + LD+ G+G T L+ AG G+V G+
Sbjct: 25 DVISFGIH----RLWKDFTMKCMGVKRGNKFLDVAGGTGDWTFGLSDSAGSSGKVVGLDI 80
Query: 82 -EHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVS------PSY 134
E++++ E K K N ++F+ N + + +DI+ +S P Y
Sbjct: 81 NENMLKEGEKKAKEEGKYN--------IEFLQGNAEELPFEDDSFDIVTISFGLRNFPDY 132
Query: 135 FTIPQKLLDQLVPGGRMV 152
+ ++ L PGGR+V
Sbjct: 133 LKVLKEAFRVLKPGGRVV 150
|
Length = 233 |
| >gnl|CDD|219979 pfam08704, GCD14, tRNA methyltransferase complex GCD14 subunit | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 8e-06
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 11/69 (15%)
Query: 14 VNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAG 73
+ P+R QI Y DIS MLEL KPG+ + + G+GSG L+ +A
Sbjct: 77 LALPHRT---QILYTPDISLII---MMLEL-----KPGSVVCESGTGSGSLSHAIARTVA 125
Query: 74 PEGRVYGVE 82
P G +Y E
Sbjct: 126 PTGHLYTFE 134
|
GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA. Length = 309 |
| >gnl|CDD|233880 TIGR02469, CbiT, precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 2e-05
Identities = 32/132 (24%), Positives = 61/132 (46%), Gaps = 18/132 (13%)
Query: 31 ISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE---HVMEL 87
++ + A L L+ ++PG + DIG+G+G +T A + P GRVY +E ++L
Sbjct: 2 MTKREVRALTLSKLR--LRPGDVLWDIGAGTGSVTIEAARLV-PNGRVYAIERNPEALDL 58
Query: 88 AESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIPQKLLD---- 143
E +++ N +++ + D + V S + Q++L+
Sbjct: 59 IERNLRRFGVSNIVIVEGD-----APEAPEDLLPDP--DAVFVGGSGGLL-QEILEAVER 110
Query: 144 QLVPGGRMVMPV 155
+L PGGR+V+
Sbjct: 111 RLRPGGRIVLNA 122
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 124 |
| >gnl|CDD|226607 COG4122, COG4122, Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 2e-05
Identities = 30/137 (21%), Positives = 56/137 (40%), Gaps = 16/137 (11%)
Query: 27 YGADISSPHIHAQMLELLKD--KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHV 84
+ + P I + LL+ ++ RIL+IG+ GY +A +GR+ +E
Sbjct: 34 FARENGVPIIDPETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERD 93
Query: 85 MELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREA--PYDIIHV------SPSYFT 136
E AE + +N+ + +D + + R +D++ + P Y
Sbjct: 94 EERAEIARENLAEAG---VDDRIELLLGGDALDVLSRLLDGSFDLVFIDADKADYPEYL- 149
Query: 137 IPQKLLDQLVPGGRMVM 153
++ L L PGG +V
Sbjct: 150 --ERALPLLRPGGLIVA 164
|
Length = 219 |
| >gnl|CDD|131799 TIGR02752, MenG_heptapren, demethylmenaquinone methyltransferase | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 4e-05
Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 27/119 (22%)
Query: 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV---EHVMELAESSIKNIDKGNSELLD 104
++ G LD+ G+ + LA GPEG V G+ E+++ + +K+ N EL+
Sbjct: 43 VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELV- 101
Query: 105 QGRVQFVVWNGKHGYEREAPYD---IIHVS--------PSYFTIPQKLLDQLVPGGRMV 152
HG E P+D +V+ P Y + +++ + PGG++V
Sbjct: 102 ------------HGNAMELPFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVV 148
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 231 |
| >gnl|CDD|234740 PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 4e-05
Identities = 19/57 (33%), Positives = 32/57 (56%)
Query: 41 LELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97
L L K +++ G ILDIG G+G +T + + G G+VY V+ + + +N +K
Sbjct: 31 LALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEK 87
|
Length = 198 |
| >gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 1e-04
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 8/57 (14%)
Query: 42 ELLKD--KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE---HVMELAESSIK 93
LL + K G R+L++G+GSG + A +V GV+ + +E A+ + K
Sbjct: 13 FLLAENAVDKKGDRVLEVGTGSGIVAIVAAKNG---KKVVGVDINPYAVECAKCNAK 66
|
Length = 188 |
| >gnl|CDD|225443 COG2890, HemK, Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 1e-04
Identities = 32/112 (28%), Positives = 44/112 (39%), Gaps = 21/112 (18%)
Query: 36 IHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV---EHVMELAESSI 92
+ L LL RILD+G+GSG + LA GP+ V V + LA
Sbjct: 99 LVEAALALLLQL---DKRILDLGTGSGAIAIALA-KEGPDAEVIAVDISPDALALARE-- 152
Query: 93 KNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVS-PSYFTIPQKLLD 143
N+E RV V + +D+I VS P Y IP + +
Sbjct: 153 ------NAERNGLVRVLVVQSDLFEPLRG--KFDLI-VSNPPY--IPAEDPE 193
|
Length = 280 |
| >gnl|CDD|225173 COG2264, PrmA, Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 2e-04
Identities = 37/151 (24%), Positives = 62/151 (41%), Gaps = 31/151 (20%)
Query: 41 LELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELA-ESSIKNIDKGN 99
LE L+ +K G +LD+G GSG L A + G + +V GV+ + A E++ +N
Sbjct: 153 LEALEKLLKKGKTVLDVGCGSGILAIAAAKL-GAK-KVVGVD-IDPQAVEAARENARLNG 209
Query: 100 SELLDQGRVQFVVWNGKHGYEREAPYDII--------HVSPSYFTIPQKLLDQLVPGGRM 151
EL VQ + E P+D+I V + + L PGGR+
Sbjct: 210 VEL----LVQAKGFLLLEVPE-NGPFDVIVANILAEVLVE-----LAPDIKRLLKPGGRL 259
Query: 152 VMP---------VGEPFKGQNLTIIDKLADG 173
++ V E ++ +++ L
Sbjct: 260 ILSGILEDQAESVAEAYEQAGFEVVEVLERE 290
|
Length = 300 |
| >gnl|CDD|237007 PRK11873, arsM, arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 2e-04
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 47 KIKPGARILDIGSGSGYLTACL--AYMAGPEGRVYGVEHVMELAESSIKNIDKG 98
++KPG +LD+GSG G+ C A GP G+V GV+ E+ + N K
Sbjct: 74 ELKPGETVLDLGSGGGF--DCFLAARRVGPTGKVIGVDMTPEMLAKARANARKA 125
|
Length = 272 |
| >gnl|CDD|227135 COG4798, COG4798, Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 5e-04
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV 81
+KPGA ++D+ G GY T + GP+G+VY
Sbjct: 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAY 79
|
Length = 238 |
| >gnl|CDD|201699 pfam01269, Fibrillarin, Fibrillarin | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 5e-04
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEH 83
IKPG+++L +G+ SG + ++ + GPEG VY VE
Sbjct: 71 IKPGSKVLYLGAASGTTVSHVSDIVGPEGVVYAVEF 106
|
Length = 229 |
| >gnl|CDD|225139 COG2230, Cfa, Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 8e-04
Identities = 40/133 (30%), Positives = 57/133 (42%), Gaps = 31/133 (23%)
Query: 38 AQM--LELLKDKI--KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHV-MELAESSI 92
AQ L+L+ +K+ KPG +LDIG G G L Y A YGV V + L+E +
Sbjct: 56 AQRAKLDLILEKLGLKPGMTLLDIGCGWGGL---AIYAA----EEYGVTVVGVTLSEEQL 108
Query: 93 KNIDKGNSELLDQGRVQFVVWNGKHGYER-EAPYDII-------HVS----PSYFTIPQK 140
+K + + V+ Y E P+D I HV +F K
Sbjct: 109 AYAEKRIAARGLEDNVEVR----LQDYRDFEEPFDRIVSVGMFEHVGKENYDDFFK---K 161
Query: 141 LLDQLVPGGRMVM 153
+ L PGGRM++
Sbjct: 162 VYALLKPGGRMLL 174
|
Length = 283 |
| >gnl|CDD|233687 TIGR02021, BchM-ChlM, magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Score = 38.6 bits (90), Expect = 8e-04
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 9/78 (11%)
Query: 36 IHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEG-RVYGVEHVMELAESSIKN 94
+ ++L+ L G R+LD G G+G L+ LA G V V +++E ++
Sbjct: 41 MRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELA----KRGAIVKAV----DISEQMVQM 92
Query: 95 IDKGNSELLDQGRVQFVV 112
G V+F V
Sbjct: 93 ARNRAQGRDVAGNVEFEV 110
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 219 |
| >gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 37.5 bits (87), Expect = 0.001
Identities = 31/124 (25%), Positives = 48/124 (38%), Gaps = 34/124 (27%)
Query: 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97
A++L L ++KPG R+LDIG G+G L L G V GV
Sbjct: 10 ARLLARLLPRLKPGGRVLDIGCGTGILLRLLRE-RGF--DVTGV---------------- 50
Query: 98 GNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTI-----PQKLLDQLV----PG 148
+ + F +++ YD+I ++ + P LL QL PG
Sbjct: 51 ---DPSPAAVLIFSLFDAPDPAVLAGKYDLIT---AFEVLEHLPDPPALLQQLRELLKPG 104
Query: 149 GRMV 152
G ++
Sbjct: 105 GVLL 108
|
This family appears to be a methyltransferase domain. Length = 154 |
| >gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional | Back alignment and domain information |
|---|
Score = 38.6 bits (90), Expect = 0.001
Identities = 16/35 (45%), Positives = 25/35 (71%)
Query: 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
IKPG+++L +G+ SG + ++ + GPEG VY VE
Sbjct: 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVE 164
|
Length = 293 |
| >gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 0.002
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 35 HIHAQMLELLKDKIKP-GARILDIGSGSGYLTACLA 69
+ ++L LLK+K A +LDIG G+GYLT L
Sbjct: 18 EMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALL 53
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 240 |
| >gnl|CDD|225172 COG2263, COG2263, Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 37.3 bits (87), Expect = 0.002
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 8/62 (12%)
Query: 51 GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQF 110
G +LD+G+G+G L A A + G RV V+ E E I + N+E L G V+F
Sbjct: 46 GKTVLDLGAGTGIL-AIGAALLGAS-RVLAVDIDPEALE-----IARANAEELL-GDVEF 97
Query: 111 VV 112
VV
Sbjct: 98 VV 99
|
Length = 198 |
| >gnl|CDD|218990 pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA) | Back alignment and domain information |
|---|
Score = 37.6 bits (88), Expect = 0.002
Identities = 37/148 (25%), Positives = 67/148 (45%), Gaps = 19/148 (12%)
Query: 41 LELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELA-ESSIKNIDKGN 99
LE L+ +KPG +LD+G GSG L A A G + +V GV+ + +A ++ +N +
Sbjct: 151 LEALESLVKPGETVLDVGCGSGIL-AIAALKLGAK-KVVGVD-IDPVAVRAAKENAE--- 204
Query: 100 SELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIPQKLLDQ----LVPGGRMVMPV 155
L+ Q V+ G E D++ V+ +L + PGG +++
Sbjct: 205 ---LNGVEAQLEVYL--PGDLPEGKADVV-VANILADPLIELAPDIYALVKPGGYLILS- 257
Query: 156 GEPFKGQNLTIIDKLADGYTIVTTVVRG 183
G + Q + + + G+ ++T R
Sbjct: 258 G-ILEEQADDVAEAYSQGFELITVEERE 284
|
This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences. Length = 294 |
| >gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 35.0 bits (81), Expect = 0.004
Identities = 23/105 (21%), Positives = 39/105 (37%), Gaps = 17/105 (16%)
Query: 55 LDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWN 114
LDIG G+G L L A P GV +++ ++++ + L G + V
Sbjct: 1 LDIGCGTGTLLRALL-EALPGLEYTGV----DISPAALEAAAE---RLAALGLLDAVRVR 52
Query: 115 GKHG---YEREAPYDIIHVSP--SYFTIPQKLLDQ----LVPGGR 150
+D++ S + P+ +L L PGG
Sbjct: 53 LDVLDAIDLDPGSFDVVVASNVLHHLADPRAVLRNLRRLLKPGGV 97
|
Members of this family are SAM dependent methyltransferases. Length = 98 |
| >gnl|CDD|216666 pfam01728, FtsJ, FtsJ-like methyltransferase | Back alignment and domain information |
|---|
Score = 36.0 bits (84), Expect = 0.004
Identities = 35/153 (22%), Positives = 57/153 (37%), Gaps = 14/153 (9%)
Query: 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE----HVMELAESSIK 93
++ E K G +LD+G+ G + L G G+V V+ ++
Sbjct: 10 LEIDERFGLKPGKGKTVLDLGAAPGGFSQVLLER-GGAGKVVAVDLGPMEPIQGVYFLRG 68
Query: 94 NI-DKGNSELLDQ---GRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIPQKLLDQLVPGG 149
+I D E L + G+V V+ +G D L+ L PGG
Sbjct: 69 DITDPETLEKLRELLPGKVDLVLSDGAPNVSGIENTDSFISLQLVLAALLLALEVLRPGG 128
Query: 150 RMVMPVGEPFKGQNLT--IIDKLADGYTIVTTV 180
V+ V FKG + +++KL G+ V
Sbjct: 129 NFVVKV---FKGFEFSVELLEKLKKGFEKVGIF 158
|
This family consists of FtsJ from various bacterial and archaeal sources FtsJ is a methyltransferase, but actually has no effect on cell division. FtsJ's substrate is the 23S rRNA. The 1.5 A crystal structure of FtsJ in complex with its cofactor S-adenosylmethionine revealed that FtsJ has a methyltransferase fold. This family also includes the N terminus of flaviviral NS5 protein. It has been hypothesised that the N-terminal domain of NS5 is a methyltransferase involved in viral RNA capping. Length = 177 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 204 | |||
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 100.0 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 99.97 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.96 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.96 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.96 | |
| KOG1661|consensus | 237 | 99.94 | ||
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.94 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.89 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.79 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.77 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.76 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.73 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.72 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.71 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.71 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.71 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.7 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.7 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.69 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.68 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.67 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.67 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.65 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.65 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.65 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.65 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.64 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.63 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.63 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.63 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.62 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.62 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.62 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.62 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.62 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.62 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.62 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.62 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.62 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.62 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.61 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.61 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.61 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.61 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.61 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.6 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.6 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.59 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.59 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.59 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.59 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 99.58 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.58 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.58 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.58 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.58 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.58 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.58 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.58 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.57 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.57 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.57 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 99.57 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.56 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 99.56 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.56 | |
| KOG2904|consensus | 328 | 99.56 | ||
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.55 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 99.55 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.55 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.55 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.55 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.54 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.54 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.54 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.54 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.54 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.54 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.53 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 99.53 | |
| KOG1270|consensus | 282 | 99.53 | ||
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.52 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.52 | |
| KOG1540|consensus | 296 | 99.52 | ||
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 99.52 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.52 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.51 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 99.51 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.51 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.51 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.51 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.5 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.5 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.5 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 99.5 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.49 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.49 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 99.49 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.48 | |
| KOG1271|consensus | 227 | 99.47 | ||
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.47 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.47 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.47 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.46 | |
| PLN02476 | 278 | O-methyltransferase | 99.46 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 99.46 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.45 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.45 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.44 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.44 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.44 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.43 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.43 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 99.42 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 99.42 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 99.41 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.4 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 99.4 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.39 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.39 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.38 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.38 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 99.38 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.36 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 99.35 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.35 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.35 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.33 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 99.32 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.32 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.31 | |
| KOG4300|consensus | 252 | 99.31 | ||
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 99.3 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 99.3 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.28 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 99.28 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.27 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 99.27 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.27 | |
| PLN02366 | 308 | spermidine synthase | 99.27 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.27 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 99.26 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 99.26 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 99.26 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 99.25 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 99.25 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.24 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 99.24 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 99.23 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 99.23 | |
| KOG1541|consensus | 270 | 99.22 | ||
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 99.22 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 99.22 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 99.21 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.21 | |
| KOG2899|consensus | 288 | 99.2 | ||
| KOG3010|consensus | 261 | 99.19 | ||
| KOG3191|consensus | 209 | 99.19 | ||
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 99.18 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 99.16 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 99.14 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 99.13 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 99.13 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 99.13 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 99.12 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 99.11 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 99.11 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 99.11 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 99.1 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 99.1 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 99.1 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 99.09 | |
| KOG2915|consensus | 314 | 99.08 | ||
| KOG3420|consensus | 185 | 99.08 | ||
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.05 | |
| KOG2361|consensus | 264 | 99.05 | ||
| PLN02823 | 336 | spermine synthase | 99.05 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 99.05 | |
| KOG1499|consensus | 346 | 99.05 | ||
| KOG1663|consensus | 237 | 99.04 | ||
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 99.04 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 99.03 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 99.02 | |
| KOG0820|consensus | 315 | 99.02 | ||
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 99.0 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.0 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.96 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.96 | |
| KOG1975|consensus | 389 | 98.94 | ||
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 98.93 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 98.9 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.9 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 98.89 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 98.86 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.86 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.86 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.83 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.82 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 98.82 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.81 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 98.8 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.8 | |
| KOG1500|consensus | 517 | 98.79 | ||
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 98.77 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 98.73 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 98.69 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.67 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 98.62 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 98.61 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.59 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.59 | |
| KOG1122|consensus | 460 | 98.58 | ||
| KOG2940|consensus | 325 | 98.56 | ||
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 98.56 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.55 | |
| KOG2187|consensus | 534 | 98.54 | ||
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 98.53 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 98.51 | |
| KOG3115|consensus | 249 | 98.49 | ||
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.48 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 98.45 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 98.44 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 98.43 | |
| KOG4589|consensus | 232 | 98.43 | ||
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 98.42 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 98.4 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 98.39 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 98.39 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 98.38 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 98.33 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 98.3 | |
| KOG3045|consensus | 325 | 98.29 | ||
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 98.27 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 98.24 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 98.22 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 98.17 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 98.17 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 98.16 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 98.11 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 98.09 | |
| KOG2198|consensus | 375 | 98.06 | ||
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 98.06 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 98.04 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 98.01 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.99 | |
| KOG1331|consensus | 293 | 97.97 | ||
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 97.92 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 97.87 | |
| KOG2352|consensus | 482 | 97.87 | ||
| KOG1596|consensus | 317 | 97.87 | ||
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 97.86 | |
| KOG2730|consensus | 263 | 97.85 | ||
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 97.82 | |
| KOG1269|consensus | 364 | 97.81 | ||
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 97.79 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 97.77 | |
| KOG3178|consensus | 342 | 97.77 | ||
| KOG1709|consensus | 271 | 97.76 | ||
| KOG3987|consensus | 288 | 97.76 | ||
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 97.71 | |
| KOG0024|consensus | 354 | 97.7 | ||
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 97.67 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 97.65 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 97.62 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 97.61 | |
| KOG2671|consensus | 421 | 97.6 | ||
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 97.56 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 97.55 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 97.48 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 97.47 | |
| KOG4058|consensus | 199 | 97.38 | ||
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 97.3 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 97.25 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 97.15 | |
| PHA01634 | 156 | hypothetical protein | 97.13 | |
| TIGR00497 | 501 | hsdM type I restriction system adenine methylase ( | 97.04 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 97.03 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 97.01 | |
| KOG3201|consensus | 201 | 96.96 | ||
| PRK11524 | 284 | putative methyltransferase; Provisional | 96.92 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 96.9 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 96.84 | |
| KOG1501|consensus | 636 | 96.8 | ||
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 96.77 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 96.77 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 96.69 | |
| PRK13699 | 227 | putative methylase; Provisional | 96.62 | |
| PF10237 | 162 | N6-adenineMlase: Probable N6-adenine methyltransfe | 96.61 | |
| KOG1562|consensus | 337 | 96.48 | ||
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 96.47 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 96.42 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 96.36 | |
| KOG1253|consensus | 525 | 96.31 | ||
| KOG0822|consensus | 649 | 96.29 | ||
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 96.23 | |
| KOG1099|consensus | 294 | 96.19 | ||
| KOG2352|consensus | 482 | 96.17 | ||
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 96.16 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 96.15 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 96.12 | |
| KOG2798|consensus | 369 | 96.08 | ||
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 96.05 | |
| PF05711 | 248 | TylF: Macrocin-O-methyltransferase (TylF); InterPr | 96.05 | |
| KOG1227|consensus | 351 | 96.01 | ||
| KOG2793|consensus | 248 | 96.01 | ||
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 95.97 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 95.84 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 95.72 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 95.53 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 95.51 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 95.41 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 95.3 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 95.29 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 95.2 | |
| PTZ00357 | 1072 | methyltransferase; Provisional | 95.19 | |
| COG1062 | 366 | AdhC Zn-dependent alcohol dehydrogenases, class II | 95.13 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 95.08 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 95.06 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 94.87 | |
| PF07279 | 218 | DUF1442: Protein of unknown function (DUF1442); In | 94.85 | |
| PLN02827 | 378 | Alcohol dehydrogenase-like | 94.84 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 94.84 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 94.81 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 94.67 | |
| cd08238 | 410 | sorbose_phosphate_red L-sorbose-1-phosphate reduct | 94.65 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 94.65 | |
| cd08255 | 277 | 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_ | 94.63 | |
| cd08277 | 365 | liver_alcohol_DH_like Liver alcohol dehydrogenase. | 94.62 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 94.61 | |
| KOG2078|consensus | 495 | 94.59 | ||
| TIGR02819 | 393 | fdhA_non_GSH formaldehyde dehydrogenase, glutathio | 94.51 | |
| cd08285 | 351 | NADP_ADH NADP(H)-dependent alcohol dehydrogenases. | 94.39 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 94.36 | |
| PLN02514 | 357 | cinnamyl-alcohol dehydrogenase | 94.35 | |
| KOG1098|consensus | 780 | 94.21 | ||
| TIGR02818 | 368 | adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr | 94.21 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 94.16 | |
| cd08300 | 368 | alcohol_DH_class_III class III alcohol dehydrogena | 93.87 | |
| KOG2360|consensus | 413 | 93.86 | ||
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 93.86 | |
| cd05278 | 347 | FDH_like Formaldehyde dehydrogenases. Formaldehyde | 93.8 | |
| PLN02494 | 477 | adenosylhomocysteinase | 93.8 | |
| cd08232 | 339 | idonate-5-DH L-idonate 5-dehydrogenase. L-idonate | 93.76 | |
| cd08296 | 333 | CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci | 93.7 | |
| cd08242 | 319 | MDR_like Medium chain dehydrogenases/reductase (MD | 93.6 | |
| PLN02178 | 375 | cinnamyl-alcohol dehydrogenase | 93.55 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 93.55 | |
| KOG0023|consensus | 360 | 93.49 | ||
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 93.48 | |
| KOG0022|consensus | 375 | 93.46 | ||
| PF05206 | 259 | TRM13: Methyltransferase TRM13; InterPro: IPR00787 | 93.42 | |
| cd08245 | 330 | CAD Cinnamyl alcohol dehydrogenases (CAD) and rela | 93.33 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 93.23 | |
| cd08301 | 369 | alcohol_DH_plants Plant alcohol dehydrogenase. NAD | 93.05 | |
| cd08298 | 329 | CAD2 Cinnamyl alcohol dehydrogenases (CAD). These | 93.0 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 92.76 | |
| cd08231 | 361 | MDR_TM0436_like Hypothetical enzyme TM0436 resembl | 92.7 | |
| cd08233 | 351 | butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog | 92.68 | |
| cd08234 | 334 | threonine_DH_like L-threonine dehydrogenase. L-thr | 92.67 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 92.59 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 92.46 | |
| KOG2651|consensus | 476 | 92.39 | ||
| cd08261 | 337 | Zn_ADH7 Alcohol dehydrogenases of the MDR family. | 92.38 | |
| COG1568 | 354 | Predicted methyltransferases [General function pre | 92.35 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 92.28 | |
| cd08278 | 365 | benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be | 92.23 | |
| cd05285 | 343 | sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a | 92.22 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 92.2 | |
| PRK13699 | 227 | putative methylase; Provisional | 92.16 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 92.09 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 91.9 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 91.8 | |
| cd08286 | 345 | FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik | 91.79 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 91.69 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 91.67 | |
| KOG3924|consensus | 419 | 91.59 | ||
| PRK10083 | 339 | putative oxidoreductase; Provisional | 91.53 | |
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 91.38 | |
| PRK10458 | 467 | DNA cytosine methylase; Provisional | 91.24 | |
| PF05050 | 167 | Methyltransf_21: Methyltransferase FkbM domain; In | 91.11 | |
| cd05281 | 341 | TDH Threonine dehydrogenase. L-threonine dehydroge | 91.09 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 90.82 | |
| COG3510 | 237 | CmcI Cephalosporin hydroxylase [Defense mechanisms | 90.77 | |
| PF11312 | 315 | DUF3115: Protein of unknown function (DUF3115); In | 90.63 | |
| cd05279 | 365 | Zn_ADH1 Liver alcohol dehydrogenase and related zi | 90.57 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 90.54 | |
| KOG2920|consensus | 282 | 90.53 | ||
| cd05284 | 340 | arabinose_DH_like D-arabinose dehydrogenase. This | 90.5 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 90.47 | |
| PLN02702 | 364 | L-idonate 5-dehydrogenase | 90.39 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 90.3 | |
| cd08236 | 343 | sugar_DH NAD(P)-dependent sugar dehydrogenases. Th | 89.85 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 89.69 | |
| KOG2912|consensus | 419 | 89.65 | ||
| cd05283 | 337 | CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam | 89.6 | |
| cd08284 | 344 | FDH_like_2 Glutathione-dependent formaldehyde dehy | 89.52 | |
| PF05575 | 286 | V_cholerae_RfbT: Vibrio cholerae RfbT protein; Int | 89.41 | |
| KOG2782|consensus | 303 | 89.35 | ||
| COG2961 | 279 | ComJ Protein involved in catabolism of external DN | 89.29 | |
| TIGR00692 | 340 | tdh L-threonine 3-dehydrogenase. E. coli His-90 mo | 89.21 | |
| cd08240 | 350 | 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy | 89.15 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 89.11 | |
| COG4017 | 254 | Uncharacterized protein conserved in archaea [Func | 89.03 | |
| cd08263 | 367 | Zn_ADH10 Alcohol dehydrogenases of the MDR family. | 88.86 | |
| PRK09422 | 338 | ethanol-active dehydrogenase/acetaldehyde-active r | 88.78 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 88.65 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 88.5 | |
| cd08265 | 384 | Zn_ADH3 Alcohol dehydrogenases of the MDR family. | 88.37 | |
| KOG1198|consensus | 347 | 88.33 | ||
| PRK05562 | 223 | precorrin-2 dehydrogenase; Provisional | 87.89 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 87.86 | |
| COG1255 | 129 | Uncharacterized protein conserved in archaea [Func | 87.76 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 87.73 | |
| PRK05396 | 341 | tdh L-threonine 3-dehydrogenase; Validated | 87.67 | |
| KOG3350|consensus | 217 | 87.45 | ||
| cd08279 | 363 | Zn_ADH_class_III Class III alcohol dehydrogenase. | 87.3 | |
| PF03686 | 127 | UPF0146: Uncharacterised protein family (UPF0146); | 87.23 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 86.9 | |
| COG0863 | 302 | DNA modification methylase [DNA replication, recom | 86.72 | |
| KOG0821|consensus | 326 | 86.56 | ||
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 86.46 | |
| KOG2539|consensus | 491 | 86.25 | ||
| PF08484 | 160 | Methyltransf_14: C-methyltransferase C-terminal do | 86.15 | |
| cd08256 | 350 | Zn_ADH2 Alcohol dehydrogenases of the MDR family. | 86.01 | |
| cd08274 | 350 | MDR9 Medium chain dehydrogenases/reductase (MDR)/z | 85.8 | |
| cd08287 | 345 | FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-lik | 85.76 | |
| cd08235 | 343 | iditol_2_DH_like L-iditol 2-dehydrogenase. Putativ | 85.32 | |
| cd05289 | 309 | MDR_like_2 alcohol dehydrogenase and quinone reduc | 85.19 | |
| cd08260 | 345 | Zn_ADH6 Alcohol dehydrogenases of the MDR family. | 84.9 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 84.65 | |
| cd08262 | 341 | Zn_ADH8 Alcohol dehydrogenases of the MDR family. | 84.58 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 84.31 | |
| cd08291 | 324 | ETR_like_1 2-enoyl thioester reductase (ETR) like | 84.23 | |
| PRK08618 | 325 | ornithine cyclodeaminase; Validated | 84.08 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 83.92 | |
| cd05286 | 320 | QOR2 Quinone oxidoreductase (QOR). Quinone oxidore | 83.91 | |
| PF12692 | 160 | Methyltransf_17: S-adenosyl-L-methionine methyltra | 83.74 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 83.69 | |
| cd08241 | 323 | QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t | 83.6 | |
| cd08269 | 312 | Zn_ADH9 Alcohol dehydrogenases of the MDR family. | 83.6 | |
| COG0771 | 448 | MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas | 83.46 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 82.99 | |
| cd08282 | 375 | PFDH_like Pseudomonas putida aldehyde-dismutating | 82.95 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 82.69 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 82.66 | |
| COG5379 | 414 | BtaA S-adenosylmethionine:diacylglycerol 3-amino-3 | 82.64 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 82.52 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 82.52 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 82.52 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 82.51 | |
| PF02086 | 260 | MethyltransfD12: D12 class N6 adenine-specific DNA | 81.86 | |
| cd08246 | 393 | crotonyl_coA_red crotonyl-CoA reductase. Crotonyl- | 81.7 | |
| COG2933 | 358 | Predicted SAM-dependent methyltransferase [General | 81.49 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 81.35 | |
| PF12242 | 78 | Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2 | 81.34 | |
| KOG1209|consensus | 289 | 81.26 | ||
| PRK07340 | 304 | ornithine cyclodeaminase; Validated | 81.05 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 80.81 | |
| cd05288 | 329 | PGDH Prostaglandin dehydrogenases. Prostaglandins | 80.62 | |
| PRK08217 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 80.35 | |
| cd08289 | 326 | MDR_yhfp_like Yhfp putative quinone oxidoreductase | 80.25 |
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-32 Score=196.39 Aligned_cols=179 Identities=42% Similarity=0.645 Sum_probs=166.2
Q ss_pred Cccccccccccccc-CCccccccccccCCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEE
Q psy10572 1 MLRVDRKNFFTRVV-NEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVY 79 (204)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~ 79 (204)
|.+|||+.|+++.+ ..+|.|.++++++|+.++.+++.+.|++.+. +.++.+|||||||+|+.+..+++..+ +|+
T Consensus 24 ~~~vPRe~FVp~~~~~~AY~d~~lpi~~gqtis~P~~vA~m~~~L~--~~~g~~VLEIGtGsGY~aAvla~l~~---~V~ 98 (209)
T COG2518 24 FLAVPRELFVPAAYKHLAYEDRALPIGCGQTISAPHMVARMLQLLE--LKPGDRVLEIGTGSGYQAAVLARLVG---RVV 98 (209)
T ss_pred HHhCCHHhccCchhhcccccCCcccCCCCceecCcHHHHHHHHHhC--CCCCCeEEEECCCchHHHHHHHHHhC---eEE
Confidence 56899999999999 9999999999999999999999999999999 89999999999999999999999875 999
Q ss_pred EEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEEecCCC
Q psy10572 80 GVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 80 ~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
++|..+.+.+.|++++.. ++..|+.++++|....+.+.++||.|++.+....+++.+.+.|++||++++.+. ..
T Consensus 99 siEr~~~L~~~A~~~L~~-----lg~~nV~v~~gDG~~G~~~~aPyD~I~Vtaaa~~vP~~Ll~QL~~gGrlv~PvG-~~ 172 (209)
T COG2518 99 SIERIEELAEQARRNLET-----LGYENVTVRHGDGSKGWPEEAPYDRIIVTAAAPEVPEALLDQLKPGGRLVIPVG-SG 172 (209)
T ss_pred EEEEcHHHHHHHHHHHHH-----cCCCceEEEECCcccCCCCCCCcCEEEEeeccCCCCHHHHHhcccCCEEEEEEc-cC
Confidence 999999999999999988 346789999999999999889999999999999999999999999999999998 33
Q ss_pred CcceEEEEeecCCceEEEeeeeeeeeeeeccc
Q psy10572 160 KGQNLTIIDKLADGYTIVTTVVRGVRTNPLYR 191 (204)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~ 191 (204)
..+.+..+.+...+.+.. ..++++.|.|+.+
T Consensus 173 ~~q~l~~~~k~~~~~~~~-~~l~~v~~vPl~~ 203 (209)
T COG2518 173 PAQRLLRITKDGDGNFER-RDLFNVRFVPLVG 203 (209)
T ss_pred CcEEEEEEEEcCCCcEEE-eeeccceeeecCC
Confidence 467888888877777777 8999999999988
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.2e-31 Score=194.61 Aligned_cols=184 Identities=41% Similarity=0.619 Sum_probs=156.0
Q ss_pred Cccccccccccccc-CCccccccccccCCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEE
Q psy10572 1 MLRVDRKNFFTRVV-NEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVY 79 (204)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~ 79 (204)
|++|||+.|+++.+ ..+|.|.+++++.+.+++.|.+.+.+++.+. ++++.+|||||||+|+.+..+++..++.+.|+
T Consensus 24 ~~~VpR~~Fvp~~~~~~aY~d~~l~i~~~~~is~P~~~a~~l~~L~--l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv 101 (209)
T PF01135_consen 24 FRAVPREDFVPPAFRDLAYEDRPLPIGCGQTISAPSMVARMLEALD--LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVV 101 (209)
T ss_dssp HHHS-GGGCSSCGGGGGTTSSS-EEEETTEEE--HHHHHHHHHHTT--C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEE
T ss_pred HHhCCHHHhCchhhhcCCCCCCCeeecceeechHHHHHHHHHHHHh--cCCCCEEEEecCCCcHHHHHHHHhcCccceEE
Confidence 57899999999999 9999999999999999999999999999999 99999999999999999999999987777899
Q ss_pred EEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEEecCCC
Q psy10572 80 GVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 80 ~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
++|.++.+.+.|++++...+ ..|+.++.+|....+.+.++||.|++......++..+.+.|++||++++.+.. .
T Consensus 102 ~vE~~~~l~~~A~~~l~~~~-----~~nv~~~~gdg~~g~~~~apfD~I~v~~a~~~ip~~l~~qL~~gGrLV~pi~~-~ 175 (209)
T PF01135_consen 102 SVERDPELAERARRNLARLG-----IDNVEVVVGDGSEGWPEEAPFDRIIVTAAVPEIPEALLEQLKPGGRLVAPIGQ-G 175 (209)
T ss_dssp EEESBHHHHHHHHHHHHHHT-----THSEEEEES-GGGTTGGG-SEEEEEESSBBSS--HHHHHTEEEEEEEEEEESS-S
T ss_pred EECccHHHHHHHHHHHHHhc-----cCceeEEEcchhhccccCCCcCEEEEeeccchHHHHHHHhcCCCcEEEEEEcc-C
Confidence 99999999999999998743 56899999998888777789999999999999999999999999999999987 6
Q ss_pred CcceEEEEeecCCceEEEeeeeeeeeeeecccch
Q psy10572 160 KGQNLTIIDKLADGYTIVTTVVRGVRTNPLYRDR 193 (204)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~ 193 (204)
..+.+..+.+...+.+.. ....++.|+|+.+.+
T Consensus 176 ~~~~l~~~~k~~~g~~~~-~~~~~~~fvpl~~~~ 208 (209)
T PF01135_consen 176 GSQRLVRITKKGDGEFSR-EELFPVRFVPLVGGE 208 (209)
T ss_dssp SSEEEEEEEEETTTEEEE-EEEEEE---B-BSCC
T ss_pred CceEEEEEEEeCCCcEEE-EEEeeEEEEeccCCC
Confidence 678899999988889998 999999999998754
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.9e-28 Score=180.61 Aligned_cols=181 Identities=39% Similarity=0.596 Sum_probs=158.9
Q ss_pred Cccccccccccccc-CCccccccccccCCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEE
Q psy10572 1 MLRVDRKNFFTRVV-NEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVY 79 (204)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~ 79 (204)
|+.|||+.|+|+.+ ..+|.|.+++++.|+.++.+.+.+.+++.+. +.++.+|||+|||+|+.+..+++..++.++++
T Consensus 28 ~~~v~R~~fvp~~~~~~ay~d~~~~~~~g~~~~~p~~~~~~~~~l~--~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~ 105 (212)
T PRK13942 28 LLKVPRHLFVPEYLEEYAYVDTPLEIGYGQTISAIHMVAIMCELLD--LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVV 105 (212)
T ss_pred HHcCCHhhcCCchhhhcCcCCCCccCCCCCEeCcHHHHHHHHHHcC--CCCcCEEEEECCcccHHHHHHHHhcCCCCEEE
Confidence 57899999999998 9999999999999999999999999999997 78999999999999999999998875567999
Q ss_pred EEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEEecCCC
Q psy10572 80 GVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 80 ~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
++|+++.+++.+++++...+ ..+++++.+|....+.+.++||+|++.....++++.+.+.|||||++++.....
T Consensus 106 ~vE~~~~~~~~a~~~l~~~g-----~~~v~~~~gd~~~~~~~~~~fD~I~~~~~~~~~~~~l~~~LkpgG~lvi~~~~~- 179 (212)
T PRK13942 106 TIERIPELAEKAKKTLKKLG-----YDNVEVIVGDGTLGYEENAPYDRIYVTAAGPDIPKPLIEQLKDGGIMVIPVGSY- 179 (212)
T ss_pred EEeCCHHHHHHHHHHHHHcC-----CCCeEEEECCcccCCCcCCCcCEEEECCCcccchHHHHHhhCCCcEEEEEEcCC-
Confidence 99999999999999987643 468999999987766666889999999988899999999999999999987654
Q ss_pred CcceEEEEeecCCceEEEeeeeeeeeeeecccc
Q psy10572 160 KGQNLTIIDKLADGYTIVTTVVRGVRTNPLYRD 192 (204)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~ 192 (204)
.+.+..+.+. .+.+.. ..++++.|+|+.+.
T Consensus 180 -~~~~~~~~~~-~~~~~~-~~~~~~~f~~~~~~ 209 (212)
T PRK13942 180 -SQELIRVEKD-NGKIIK-KKLGEVAFVPLIGK 209 (212)
T ss_pred -CcEEEEEEEE-CCEEEE-EEeccEEEEecccC
Confidence 4666666664 366777 88999999999765
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-27 Score=177.47 Aligned_cols=181 Identities=38% Similarity=0.501 Sum_probs=154.4
Q ss_pred Cccccccccccccc-CCccccccccccCCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEE
Q psy10572 1 MLRVDRKNFFTRVV-NEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVY 79 (204)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~ 79 (204)
|.+|||+.|+++.+ ..+|.|.++++..+..++.+.+.+.+++.+. +.++.+|||+|||+|+.+..+++..++.++++
T Consensus 24 ~~~vpR~~fv~~~~~~~ay~d~~~~~~~~~~~~~p~~~~~~~~~l~--~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~ 101 (205)
T PRK13944 24 MLSVPREEFVMPEYRMMAYEDRPLPLFAGATISAPHMVAMMCELIE--PRPGMKILEVGTGSGYQAAVCAEAIERRGKVY 101 (205)
T ss_pred HHhCCHhHcCChhHHhcCccCCCcccCCCCEechHHHHHHHHHhcC--CCCCCEEEEECcCccHHHHHHHHhcCCCCEEE
Confidence 57899999999999 8999999999999999999999999988887 67889999999999999999998875457999
Q ss_pred EEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEEecCCC
Q psy10572 80 GVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 80 ~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
++|+++.+++.+++++...+ ...+++++.+|+........+||+|+++....++++.+.+.|+|||++++.+....
T Consensus 102 ~iD~~~~~~~~a~~~l~~~~----~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~~~~~l~~~L~~gG~lvi~~~~~~ 177 (205)
T PRK13944 102 TVEIVKELAIYAAQNIERLG----YWGVVEVYHGDGKRGLEKHAPFDAIIVTAAASTIPSALVRQLKDGGVLVIPVEEGV 177 (205)
T ss_pred EEeCCHHHHHHHHHHHHHcC----CCCcEEEEECCcccCCccCCCccEEEEccCcchhhHHHHHhcCcCcEEEEEEcCCC
Confidence 99999999999999987643 12368999999876655557899999999999999999999999999999876553
Q ss_pred CcceEEEEeecCCceEEEeeeeeeeeeeecc
Q psy10572 160 KGQNLTIIDKLADGYTIVTTVVRGVRTNPLY 190 (204)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~ 190 (204)
.+.+..+.+. .+.+.. +.+.++.|+|+.
T Consensus 178 -~~~~~~~~~~-~~~~~~-~~~~~~~f~pl~ 205 (205)
T PRK13944 178 -GQVLYKVVKR-GEKVEK-RAITYVLFVPLR 205 (205)
T ss_pred -ceEEEEEEEe-CCEEEE-EEeceEEEEecC
Confidence 3556666664 456777 888999999974
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.9e-27 Score=176.96 Aligned_cols=184 Identities=40% Similarity=0.593 Sum_probs=158.9
Q ss_pred Cccccccccccccc-CCccccccccccCCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEE
Q psy10572 1 MLRVDRKNFFTRVV-NEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVY 79 (204)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~ 79 (204)
|.++||+.|+++.+ ..+|.+.+.+++.+..+..+.+.+.+++.+. +.++.+|||+|||+|+.+..+++..+..++|+
T Consensus 29 ~~~v~R~~f~~~~~~~~~y~d~~~~~~~~~~~~~p~~~~~~~~~l~--~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~ 106 (215)
T TIGR00080 29 LLSVPREEFVPEHFKEYAYVDTPLEIGYGQTISAPHMVAMMTELLE--LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVV 106 (215)
T ss_pred HHhCChhhhCCchhHhhCcCCCCcccCCCCEechHHHHHHHHHHhC--CCCcCEEEEECCCccHHHHHHHHHhCCCCEEE
Confidence 57899999999988 8999999999999999999999999999887 78899999999999999999999875556899
Q ss_pred EEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEEecCCC
Q psy10572 80 GVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 80 ~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
++|+++.+++.|++++...+ ..+++++.+|.........+||+|+++.....+++.+.+.|+|||++++.+..
T Consensus 107 ~vD~~~~~~~~A~~~~~~~g-----~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~~L~~gG~lv~~~~~-- 179 (215)
T TIGR00080 107 SIERIPELAEKAERRLRKLG-----LDNVIVIVGDGTQGWEPLAPYDRIYVTAAGPKIPEALIDQLKEGGILVMPVGE-- 179 (215)
T ss_pred EEeCCHHHHHHHHHHHHHCC-----CCCeEEEECCcccCCcccCCCCEEEEcCCcccccHHHHHhcCcCcEEEEEEcC--
Confidence 99999999999999988743 46899999998765555578999999999899999999999999999998766
Q ss_pred CcceEEEEeecCCceEEEeeeeeeeeeeecccchhh
Q psy10572 160 KGQNLTIIDKLADGYTIVTTVVRGVRTNPLYRDRFQ 195 (204)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~ 195 (204)
..+.+..+.+ ..+.+.. ..+.+..|+|+.+.+++
T Consensus 180 ~~~~~~~~~~-~~~~~~~-~~~~~~~~~pl~~~~~~ 213 (215)
T TIGR00080 180 YLQVLKRAEK-RGGEIII-KDVEPVAFVPLVGGEGF 213 (215)
T ss_pred CceEEEEEEE-eCCEEEE-EEeeeEEEEeCCCCccC
Confidence 3455655555 3466777 88999999999887654
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >KOG1661|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.2e-26 Score=164.37 Aligned_cols=197 Identities=46% Similarity=0.747 Sum_probs=177.2
Q ss_pred Cccccccccccccc-CCccccccccccCCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCc-eE
Q psy10572 1 MLRVDRKNFFTRVV-NEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEG-RV 78 (204)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~-~v 78 (204)
|+++.|..|.|..+ ..+|.|+++.+|++.+++.+++++.+++.|..++.|+.+.||+|+|+|+++..++...+..+ ..
T Consensus 32 ~~a~dR~dy~p~~~~~n~y~d~pq~~G~n~~iSAp~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~ 111 (237)
T KOG1661|consen 32 MRATDRSDYAPRSERTNPYMDSPQKIGYNLTISAPHMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNV 111 (237)
T ss_pred HHhhchhhccccccccCCCCCCccccCCceEEcchHHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccc
Confidence 67899999999988 99999999999999999999999999999999999999999999999999999998765433 45
Q ss_pred EEEEcCHHHHHHHHHHhhhcC-----ccccCccceEEEEecCCCCCCCCCCeeEEEECCCccchhHHHHHhcCCCcEEEE
Q psy10572 79 YGVEHVMELAESSIKNIDKGN-----SELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVM 153 (204)
Q Consensus 79 ~~vD~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~ 153 (204)
+|||.-+.+++.+++++..+. ...+...++.++.+|......+..+||.|++.+....+++.+...|++||.+++
T Consensus 112 ~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~a~YDaIhvGAaa~~~pq~l~dqL~~gGrlli 191 (237)
T KOG1661|consen 112 HGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQAPYDAIHVGAAASELPQELLDQLKPGGRLLI 191 (237)
T ss_pred cchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCccCCcceEEEccCccccHHHHHHhhccCCeEEE
Confidence 999999999999999997754 223345678899999999988889999999999999999999999999999999
Q ss_pred EecCCCCcceEEEEeecCCceEEEeeeeeeeeeeecccchhhhhh
Q psy10572 154 PVGEPFKGQNLTIIDKLADGYTIVTTVVRGVRTNPLYRDRFQQKK 198 (204)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~ 198 (204)
.......-+.++..++...+.... +..+.+.++|++....+...
T Consensus 192 p~~~~~~~q~~~~~dk~~~gki~~-~~~f~v~yvPlt~~~~q~~~ 235 (237)
T KOG1661|consen 192 PVGQDGGTQYLRQIDKNEDGKIKL-RTLFSVRYVPLTSRESQPSR 235 (237)
T ss_pred eecccCceeEEEeecccccCceee-eEeeceEEEeccccccccCC
Confidence 998777789999999998888888 89999999999998877654
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-24 Score=163.32 Aligned_cols=180 Identities=35% Similarity=0.521 Sum_probs=153.6
Q ss_pred Cccccccccccccc-CCccccccccccCCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEE
Q psy10572 1 MLRVDRKNFFTRVV-NEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVY 79 (204)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~ 79 (204)
|..+||+.|+|+.+ ..+|.|...+++.+..++.+.+...+.+.+. +.++.+|||+|||+|..+..+++... +++
T Consensus 30 ~~~~~r~~f~p~~~~~~ay~d~~~~~~~~~~~~~p~~~~~l~~~l~--~~~~~~VLeiG~GsG~~t~~la~~~~---~v~ 104 (212)
T PRK00312 30 IEATPRELFVPEAFKHKAYENRALPIGCGQTISQPYMVARMTELLE--LKPGDRVLEIGTGSGYQAAVLAHLVR---RVF 104 (212)
T ss_pred HHcCCHhHcCCchHHhcCccCCCccCCCCCeeCcHHHHHHHHHhcC--CCCCCEEEEECCCccHHHHHHHHHhC---EEE
Confidence 56799999999988 9999999999999999999999999998886 78889999999999999998887753 899
Q ss_pred EEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEEecCCC
Q psy10572 80 GVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 80 ~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
++|+++.+++.+++++...+ ..++.+..+|......+.++||+|+++....++++.+.+.|+|||.+++.+. ..
T Consensus 105 ~vd~~~~~~~~a~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~~~~~l~~~L~~gG~lv~~~~-~~ 178 (212)
T PRK00312 105 SVERIKTLQWEAKRRLKQLG-----LHNVSVRHGDGWKGWPAYAPFDRILVTAAAPEIPRALLEQLKEGGILVAPVG-GE 178 (212)
T ss_pred EEeCCHHHHHHHHHHHHHCC-----CCceEEEECCcccCCCcCCCcCEEEEccCchhhhHHHHHhcCCCcEEEEEEc-CC
Confidence 99999999999999987743 4568999999766554457899999999988999999999999999999887 33
Q ss_pred CcceEEEEeecCCceEEEeeeeeeeeeeecccch
Q psy10572 160 KGQNLTIIDKLADGYTIVTTVVRGVRTNPLYRDR 193 (204)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~ 193 (204)
..+....+.+ ..+.+.. ..++++.|.|+....
T Consensus 179 ~~~~~~~~~~-~~~~~~~-~~~~~~~~~p~~~~~ 210 (212)
T PRK00312 179 EQQLLTRVRK-RGGRFER-EVLEEVRFVPLVKGE 210 (212)
T ss_pred CceEEEEEEE-cCCeEEE-EEEccEEEEecCCCC
Confidence 4456666666 4556777 889999999998653
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-21 Score=153.93 Aligned_cols=183 Identities=27% Similarity=0.421 Sum_probs=140.0
Q ss_pred Cccccccccccccc--CCccccccccc-cCC---cccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCC
Q psy10572 1 MLRVDRKNFFTRVV--NEPYRIKSRQI-GYG---ADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGP 74 (204)
Q Consensus 1 ~~~~~~~~~~~~~~--~~~y~~~~~~~-~~~---~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~ 74 (204)
|++|||+.|+|+.+ ..+|.|.++++ ..+ ..++.+.+...+++.+. ++++.+|||+|||+|.++..+++..+.
T Consensus 27 ~~~vpRe~Fvp~~~~~~~aY~D~~l~~~~~g~~~~~~~~p~l~a~ll~~L~--i~~g~~VLDIG~GtG~~a~~LA~~~~~ 104 (322)
T PRK13943 27 FLEVPREEFLTKSYPLSYVYEDIVLVSYDDGEEYSTSSQPSLMALFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGE 104 (322)
T ss_pred HHcCCHHHcCCcchhhhhccCCCcccccCCCcccccCCcHHHHHHHHHhcC--CCCCCEEEEEeCCccHHHHHHHHhcCC
Confidence 67899999999876 67899998875 444 46678888888888876 778899999999999999999998744
Q ss_pred CceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 75 EGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 75 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
.+.|+++|.++.+++.|++++...+ ..++.++.+|+.......++||+|++.......+..+.+.|+|||++++.
T Consensus 105 ~g~VvgVDis~~~l~~Ar~~l~~~g-----~~nV~~i~gD~~~~~~~~~~fD~Ii~~~g~~~ip~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 105 KGLVVSVEYSRKICEIAKRNVRRLG-----IENVIFVCGDGYYGVPEFAPYDVIFVTVGVDEVPETWFTQLKEGGRVIVP 179 (322)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcC-----CCcEEEEeCChhhcccccCCccEEEECCchHHhHHHHHHhcCCCCEEEEE
Confidence 4689999999999999999987643 45789999997765554567999999988888889999999999999987
Q ss_pred ecCCC-CcceEEEEeecCCceEEEeeeeeeeeeeecccc
Q psy10572 155 VGEPF-KGQNLTIIDKLADGYTIVTTVVRGVRTNPLYRD 192 (204)
Q Consensus 155 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~ 192 (204)
..... ..+......+ ..+.+.. ...+...|++..+.
T Consensus 180 ~~~~l~~~~~~~~~~r-~~~~~~~-~~~~~~~~l~~~G~ 216 (322)
T PRK13943 180 INLKLSRRQPAFLFKK-KDPYLVG-NYKLETRFIKAGGN 216 (322)
T ss_pred eCCccCCCCceEEEEe-cCCCceE-EEEEEeeEEcccch
Confidence 65431 1222333333 2333444 45566667766443
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.1e-18 Score=128.32 Aligned_cols=116 Identities=25% Similarity=0.399 Sum_probs=97.8
Q ss_pred HHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecC
Q psy10572 36 IHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNG 115 (204)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~ 115 (204)
+...+++.+. +.++.+|||+|||+|.++..+++..+ .++++++|+|+.|++.|++++...+ ..+++++++|+
T Consensus 39 Wr~~~i~~~~--~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~-----~~~i~fv~~dA 110 (238)
T COG2226 39 WRRALISLLG--IKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKG-----VQNVEFVVGDA 110 (238)
T ss_pred HHHHHHHhhC--CCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccC-----ccceEEEEech
Confidence 3444555554 45899999999999999999999985 7899999999999999999987632 34599999999
Q ss_pred CCCCCCCCCeeEEEECCCccc------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 116 KHGYEREAPYDIIHVSPSYFT------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 116 ~~~~~~~~~~D~v~~~~~~~~------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
...++++++||+|.+..+++. .++++.|+|||||++++.-.+..
T Consensus 111 e~LPf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p 160 (238)
T COG2226 111 ENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKP 160 (238)
T ss_pred hhCCCCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCC
Confidence 999999999999999888765 56899999999999988665554
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-17 Score=113.28 Aligned_cols=101 Identities=30% Similarity=0.526 Sum_probs=82.0
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEE
Q psy10572 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIH 129 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 129 (204)
|+.+|||+|||+|.++..+++.. +.++++|+|+|+.+++.++++..... ..++++++++|+........+||+|+
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~----~~~~i~~~~~d~~~~~~~~~~~D~v~ 75 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLF-PGARVVGVDISPEMLEIARERAAEEG----LSDRITFVQGDAEFDPDFLEPFDLVI 75 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHTT----TTTTEEEEESCCHGGTTTSSCEEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcC----CCCCeEEEECccccCcccCCCCCEEE
Confidence 57899999999999999999976 67899999999999999999984422 24799999999811222235699999
Q ss_pred ECC-Cccc---------hhHHHHHhcCCCcEEEEEe
Q psy10572 130 VSP-SYFT---------IPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 130 ~~~-~~~~---------~~~~~~~~Lk~gG~l~~~~ 155 (204)
+.. .... +++.+.+.|+|||++++..
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 76 CSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp ECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 998 3322 3678999999999999865
|
... |
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.4e-18 Score=129.13 Aligned_cols=114 Identities=26% Similarity=0.438 Sum_probs=82.5
Q ss_pred HHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC
Q psy10572 39 QMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG 118 (204)
Q Consensus 39 ~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~ 118 (204)
.+++.+. ..++.+|||+|||+|.++..+++..++.++++++|+|+.|++.|+++....+ ..+++++++|+...
T Consensus 38 ~~~~~~~--~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~-----~~~i~~v~~da~~l 110 (233)
T PF01209_consen 38 KLIKLLG--LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREG-----LQNIEFVQGDAEDL 110 (233)
T ss_dssp HHHHHHT----S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT-------SEEEEE-BTTB-
T ss_pred HHHhccC--CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhC-----CCCeeEEEcCHHHh
Confidence 4455554 6788899999999999999999987677899999999999999999987643 35899999999988
Q ss_pred CCCCCCeeEEEECCCccc------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 119 YEREAPYDIIHVSPSYFT------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 119 ~~~~~~~D~v~~~~~~~~------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
++++++||.|++..+++. .++++.++|||||++++...+..
T Consensus 111 p~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p 157 (233)
T PF01209_consen 111 PFPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKP 157 (233)
T ss_dssp -S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-
T ss_pred cCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCC
Confidence 888899999999887765 45799999999999988655444
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2e-16 Score=113.55 Aligned_cols=126 Identities=26% Similarity=0.337 Sum_probs=108.7
Q ss_pred cCCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCc
Q psy10572 26 GYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQ 105 (204)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~ 105 (204)
..+..++.+++....+..|. +.++..++|||||+|..+..++... +.++++++|.++.+++..++|+++.+ .
T Consensus 12 ~~~~p~TK~EIRal~ls~L~--~~~g~~l~DIGaGtGsi~iE~a~~~-p~~~v~AIe~~~~a~~~~~~N~~~fg-----~ 83 (187)
T COG2242 12 DEGGPMTKEEIRALTLSKLR--PRPGDRLWDIGAGTGSITIEWALAG-PSGRVIAIERDEEALELIERNAARFG-----V 83 (187)
T ss_pred CCCCCCcHHHHHHHHHHhhC--CCCCCEEEEeCCCccHHHHHHHHhC-CCceEEEEecCHHHHHHHHHHHHHhC-----C
Confidence 33566889999999999998 8999999999999999999999554 88999999999999999999999844 6
Q ss_pred cceEEEEecCCCCCCCCCCeeEEEECCCc--cchhHHHHHhcCCCcEEEEEecCCC
Q psy10572 106 GRVQFVVWNGKHGYEREAPYDIIHVSPSY--FTIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 106 ~~~~~~~~d~~~~~~~~~~~D~v~~~~~~--~~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
+|+.++.+++.+......++|.|++...- +.+++.+...|+|||++++......
T Consensus 84 ~n~~vv~g~Ap~~L~~~~~~daiFIGGg~~i~~ile~~~~~l~~ggrlV~naitlE 139 (187)
T COG2242 84 DNLEVVEGDAPEALPDLPSPDAIFIGGGGNIEEILEAAWERLKPGGRLVANAITLE 139 (187)
T ss_pred CcEEEEeccchHhhcCCCCCCEEEECCCCCHHHHHHHHHHHcCcCCeEEEEeecHH
Confidence 89999999987765554579999998763 3478999999999999999776654
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.8e-16 Score=120.30 Aligned_cols=110 Identities=20% Similarity=0.241 Sum_probs=89.5
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
+.++.+|||+|||+|.++..+++..++.++++|+|+|+.|++.|+++...... ....+++++.+|+...++++++||.
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~--~~~~~i~~~~~d~~~lp~~~~sfD~ 148 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAK--SCYKNIEWIEGDATDLPFDDCYFDA 148 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhh--ccCCCeEEEEcccccCCCCCCCEeE
Confidence 56788999999999999999988765567999999999999999877532100 0135799999998877777789999
Q ss_pred EEECCCccc------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 128 IHVSPSYFT------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 128 v~~~~~~~~------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
|+++..+++ +++++.++|||||++++..+...
T Consensus 149 V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~ 186 (261)
T PLN02233 149 ITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKS 186 (261)
T ss_pred EEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCC
Confidence 999887765 45899999999999999876654
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.1e-16 Score=113.34 Aligned_cols=114 Identities=24% Similarity=0.438 Sum_probs=90.9
Q ss_pred HHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCC
Q psy10572 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGK 116 (204)
Q Consensus 37 ~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~ 116 (204)
...+++.+.. .++.+|||+|||+|.++..+++.. +..+++++|+++.+++.+++++..+. ..+++++..|..
T Consensus 20 t~lL~~~l~~--~~~~~vLDlG~G~G~i~~~la~~~-~~~~v~~vDi~~~a~~~a~~n~~~n~-----~~~v~~~~~d~~ 91 (170)
T PF05175_consen 20 TRLLLDNLPK--HKGGRVLDLGCGSGVISLALAKRG-PDAKVTAVDINPDALELAKRNAERNG-----LENVEVVQSDLF 91 (170)
T ss_dssp HHHHHHHHHH--HTTCEEEEETSTTSHHHHHHHHTS-TCEEEEEEESBHHHHHHHHHHHHHTT-----CTTEEEEESSTT
T ss_pred HHHHHHHHhh--ccCCeEEEecCChHHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHHHHhcC-----cccccccccccc
Confidence 4456666663 377899999999999999999987 66689999999999999999998865 334999999987
Q ss_pred CCCCCCCCeeEEEECCCccc-----------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 117 HGYEREAPYDIIHVSPSYFT-----------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 117 ~~~~~~~~~D~v~~~~~~~~-----------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
.... ..+||+|++|++++. +++.+.++|+|||.+++......
T Consensus 92 ~~~~-~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~ 144 (170)
T PF05175_consen 92 EALP-DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSHL 144 (170)
T ss_dssp TTCC-TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETTS
T ss_pred cccc-ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEeecCC
Confidence 6544 578999999998743 45788899999999988776554
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.1e-16 Score=113.56 Aligned_cols=105 Identities=24% Similarity=0.275 Sum_probs=88.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
++++.+|||+|||+|..+..+++.. +.++++++|.++.+++.|+++.+..+ .++++++.+|+.+... .++||+
T Consensus 43 l~~g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~-----l~~i~~~~~d~~~~~~-~~~fDl 115 (187)
T PRK00107 43 LPGGERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELG-----LKNVTVVHGRAEEFGQ-EEKFDV 115 (187)
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcC-----CCCEEEEeccHhhCCC-CCCccE
Confidence 4568899999999999999999876 67899999999999999999988754 3569999999876544 578999
Q ss_pred EEECCC--ccchhHHHHHhcCCCcEEEEEecCCC
Q psy10572 128 IHVSPS--YFTIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 128 v~~~~~--~~~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
|+++.. ...+++.+.++|+|||.+++......
T Consensus 116 V~~~~~~~~~~~l~~~~~~LkpGG~lv~~~~~~~ 149 (187)
T PRK00107 116 VTSRAVASLSDLVELCLPLLKPGGRFLALKGRDP 149 (187)
T ss_pred EEEccccCHHHHHHHHHHhcCCCeEEEEEeCCCh
Confidence 999764 23577899999999999999876654
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.1e-16 Score=117.49 Aligned_cols=115 Identities=17% Similarity=0.324 Sum_probs=92.6
Q ss_pred HHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCC
Q psy10572 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGK 116 (204)
Q Consensus 37 ~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~ 116 (204)
...++..+. +.++.+|||+|||+|..+..+++..++.++++|+|+++.+++.++++..... .++++++.+|..
T Consensus 34 ~~~~l~~l~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-----~~~v~~~~~d~~ 106 (231)
T TIGR02752 34 RKDTMKRMN--VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAG-----LHNVELVHGNAM 106 (231)
T ss_pred HHHHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcC-----CCceEEEEechh
Confidence 344555554 5778899999999999999999887566799999999999999999886532 357899999987
Q ss_pred CCCCCCCCeeEEEECCCccc------hhHHHHHhcCCCcEEEEEecCC
Q psy10572 117 HGYEREAPYDIIHVSPSYFT------IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 117 ~~~~~~~~~D~v~~~~~~~~------~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
....+.++||+|+++..+++ +++++.++|+|||.+++.....
T Consensus 107 ~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 154 (231)
T TIGR02752 107 ELPFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQ 154 (231)
T ss_pred cCCCCCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCC
Confidence 66556678999998876654 4578899999999998866543
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.4e-16 Score=111.75 Aligned_cols=103 Identities=23% Similarity=0.361 Sum_probs=85.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC--CCCCCee
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY--EREAPYD 126 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D 126 (204)
+.+.+|||+|||+|.++..+++...+.++++|+|+++.+++.|+.+++..+ .++++++++|+.... .+ +.||
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~-----~~ni~~~~~d~~~l~~~~~-~~~D 75 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELG-----LDNIEFIQGDIEDLPQELE-EKFD 75 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTT-----STTEEEEESBTTCGCGCSS-TTEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccc-----ccccceEEeehhccccccC-CCee
Confidence 467899999999999999999655467899999999999999999887643 458999999988733 22 6899
Q ss_pred EEEECCCccc------hhHHHHHhcCCCcEEEEEecC
Q psy10572 127 IIHVSPSYFT------IPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 127 ~v~~~~~~~~------~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
+|++..++++ +++.+.++|+++|.+++..+.
T Consensus 76 ~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 76 IIISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 9999987755 457899999999999997766
|
... |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.3e-15 Score=104.73 Aligned_cols=115 Identities=27% Similarity=0.386 Sum_probs=89.8
Q ss_pred hHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe
Q psy10572 34 PHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW 113 (204)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 113 (204)
..+...+.+.+. +.++.+|||+|||+|.++..+++.. +.++++++|+++.+++.+++++.... ..+++++.+
T Consensus 5 ~~~~~~~~~~~~--~~~~~~vldlG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~~~~~~~ 76 (124)
T TIGR02469 5 REVRALTLSKLR--LRPGDVLWDIGAGSGSITIEAARLV-PNGRVYAIERNPEALRLIERNARRFG-----VSNIVIVEG 76 (124)
T ss_pred HHHHHHHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHHC-CCceEEEEcCCHHHHHHHHHHHHHhC-----CCceEEEec
Confidence 344555666554 5667899999999999999999987 55799999999999999999887643 357888888
Q ss_pred cCCCCC-CCCCCeeEEEECCCccc---hhHHHHHhcCCCcEEEEEec
Q psy10572 114 NGKHGY-EREAPYDIIHVSPSYFT---IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 114 d~~~~~-~~~~~~D~v~~~~~~~~---~~~~~~~~Lk~gG~l~~~~~ 156 (204)
|..... ....+||.|++...... +++.+.+.|+|||.+++.+.
T Consensus 77 ~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 77 DAPEALEDSLPEPDRVFIGGSGGLLQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred cccccChhhcCCCCEEEECCcchhHHHHHHHHHHHcCCCCEEEEEec
Confidence 765322 22358999999775544 77899999999999998764
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.2e-15 Score=119.44 Aligned_cols=139 Identities=23% Similarity=0.292 Sum_probs=105.8
Q ss_pred CCccccccccccCCcccCChHHHHHHHHHHhccC--CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHH
Q psy10572 15 NEPYRIKSRQIGYGADISSPHIHAQMLELLKDKI--KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSI 92 (204)
Q Consensus 15 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~ 92 (204)
...|....+..+.+.+++.+.....+...+...+ .++.+|||+|||+|.++..+++.. +..+++++|+|+.+++.|+
T Consensus 84 ~~~f~g~~f~v~~~vlipr~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~-~~~~v~avDis~~al~~A~ 162 (284)
T TIGR03533 84 EAWFAGLEFYVDERVLIPRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAF-PEAEVDAVDISPDALAVAE 162 (284)
T ss_pred CCeecCcEEEECCCCccCCCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHC-CCCEEEEEECCHHHHHHHH
Confidence 3444566677777888887776665555544222 345799999999999999999987 6679999999999999999
Q ss_pred HHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEEECCCccc-------------------------------hhHHH
Q psy10572 93 KNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFT-------------------------------IPQKL 141 (204)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~-------------------------------~~~~~ 141 (204)
+++..++ ...++.++.+|+.... +..+||+|++|+++.. +++.+
T Consensus 163 ~n~~~~~----~~~~i~~~~~D~~~~~-~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a 237 (284)
T TIGR03533 163 INIERHG----LEDRVTLIQSDLFAAL-PGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEA 237 (284)
T ss_pred HHHHHcC----CCCcEEEEECchhhcc-CCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHH
Confidence 9988754 1247899999976543 3457999999977521 24566
Q ss_pred HHhcCCCcEEEEEecCCC
Q psy10572 142 LDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 142 ~~~Lk~gG~l~~~~~~~~ 159 (204)
.++|+|||++++.+....
T Consensus 238 ~~~L~~gG~l~~e~g~~~ 255 (284)
T TIGR03533 238 ADHLNENGVLVVEVGNSM 255 (284)
T ss_pred HHhcCCCCEEEEEECcCH
Confidence 789999999999887644
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.5e-16 Score=113.69 Aligned_cols=118 Identities=20% Similarity=0.258 Sum_probs=93.5
Q ss_pred cccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccce
Q psy10572 29 ADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRV 108 (204)
Q Consensus 29 ~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~ 108 (204)
..++.+.+...++..+. +.++.+|||+|||+|.++..+++.. +.++++++|+++.+++.+++++.... ..++
T Consensus 12 ~~~~~~~~r~~~~~~l~--~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~~~-----~~~i 83 (187)
T PRK08287 12 VPMTKEEVRALALSKLE--LHRAKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQRFG-----CGNI 83 (187)
T ss_pred CCCchHHHHHHHHHhcC--CCCCCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhC-----CCCe
Confidence 34556666666777775 6688899999999999999999886 66799999999999999999987643 3468
Q ss_pred EEEEecCCCCCCCCCCeeEEEECCCcc---chhHHHHHhcCCCcEEEEEec
Q psy10572 109 QFVVWNGKHGYEREAPYDIIHVSPSYF---TIPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 109 ~~~~~d~~~~~~~~~~~D~v~~~~~~~---~~~~~~~~~Lk~gG~l~~~~~ 156 (204)
+++.+|.... . ..+||+|+++.... .+++.+.+.|+|||.+++...
T Consensus 84 ~~~~~d~~~~-~-~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~lv~~~~ 132 (187)
T PRK08287 84 DIIPGEAPIE-L-PGKADAIFIGGSGGNLTAIIDWSLAHLHPGGRLVLTFI 132 (187)
T ss_pred EEEecCchhh-c-CcCCCEEEECCCccCHHHHHHHHHHhcCCCeEEEEEEe
Confidence 8888886432 2 25799999876533 366788999999999998653
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.1e-15 Score=120.98 Aligned_cols=103 Identities=22% Similarity=0.222 Sum_probs=86.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEE
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDII 128 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 128 (204)
.++.+|||+|||+|.++..+++.. +++++|+|+++.+++.++++....+ ..++++++.+|+....++.++||+|
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g----~~~~v~~~~~D~~~~~~~~~~FD~V 190 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQG----LSDKVSFQVADALNQPFEDGQFDLV 190 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcC----CCCceEEEEcCcccCCCCCCCccEE
Confidence 567899999999999999999875 3599999999999999998876643 1347999999988776777899999
Q ss_pred EECCCccc------hhHHHHHhcCCCcEEEEEecC
Q psy10572 129 HVSPSYFT------IPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 129 ~~~~~~~~------~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
++....++ +++++.++|||||.+++..+.
T Consensus 191 ~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~ 225 (340)
T PLN02244 191 WSMESGEHMPDKRKFVQELARVAAPGGRIIIVTWC 225 (340)
T ss_pred EECCchhccCCHHHHHHHHHHHcCCCcEEEEEEec
Confidence 99877655 457899999999999997654
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.4e-16 Score=123.77 Aligned_cols=146 Identities=21% Similarity=0.274 Sum_probs=108.7
Q ss_pred CCccccccccccCCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHH
Q psy10572 15 NEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKN 94 (204)
Q Consensus 15 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~ 94 (204)
...|.+..+....+..++.+.....+-..+ ..+.++.+|||+|||+|.++..+++.. +.++++++|+|+.+++.|+++
T Consensus 217 ~~~F~G~~f~V~p~vLIPRpeTE~LVe~aL-~~l~~~~rVLDLGcGSG~IaiaLA~~~-p~a~VtAVDiS~~ALe~AreN 294 (423)
T PRK14966 217 VREFYGRRFAVNPNVLIPRPETEHLVEAVL-ARLPENGRVWDLGTGSGAVAVTVALER-PDAFVRASDISPPALETARKN 294 (423)
T ss_pred eeeecCcEEEeCCCccCCCccHHHHHHHhh-hccCCCCEEEEEeChhhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHH
Confidence 556677777777788887666554443333 334566799999999999999998876 677999999999999999999
Q ss_pred hhhcCccccCccceEEEEecCCCCCC-CCCCeeEEEECCCccc-------------------------------hhHHHH
Q psy10572 95 IDKGNSELLDQGRVQFVVWNGKHGYE-REAPYDIIHVSPSYFT-------------------------------IPQKLL 142 (204)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~v~~~~~~~~-------------------------------~~~~~~ 142 (204)
+..+. .++.++++|+.+... ..++||+|++|+++.. +++.+.
T Consensus 295 a~~~g------~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~ 368 (423)
T PRK14966 295 AADLG------ARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAP 368 (423)
T ss_pred HHHcC------CcEEEEEcchhccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHH
Confidence 87643 378999999765432 2357999999998621 224556
Q ss_pred HhcCCCcEEEEEecCCCCcceEEEEe
Q psy10572 143 DQLVPGGRMVMPVGEPFKGQNLTIID 168 (204)
Q Consensus 143 ~~Lk~gG~l~~~~~~~~~~~~~~~~~ 168 (204)
+.|+|||.+++.+...+.......+.
T Consensus 369 ~~LkpgG~lilEiG~~Q~e~V~~ll~ 394 (423)
T PRK14966 369 DRLAEGGFLLLEHGFDQGAAVRGVLA 394 (423)
T ss_pred HhcCCCcEEEEEECccHHHHHHHHHH
Confidence 88999999999888776554443333
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.8e-15 Score=116.94 Aligned_cols=103 Identities=18% Similarity=0.290 Sum_probs=83.5
Q ss_pred HHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC
Q psy10572 39 QMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG 118 (204)
Q Consensus 39 ~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~ 118 (204)
.+++.+. ..++.+|||+|||+|.++..+++.. +.++++|+|+|+.+++.|++. +++++.+|+...
T Consensus 20 ~ll~~l~--~~~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~~------------~~~~~~~d~~~~ 84 (255)
T PRK14103 20 DLLARVG--AERARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARER------------GVDARTGDVRDW 84 (255)
T ss_pred HHHHhCC--CCCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHhc------------CCcEEEcChhhC
Confidence 3444443 4677899999999999999999987 667999999999999999652 477888887654
Q ss_pred CCCCCCeeEEEECCCccch------hHHHHHhcCCCcEEEEEecC
Q psy10572 119 YEREAPYDIIHVSPSYFTI------PQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 119 ~~~~~~~D~v~~~~~~~~~------~~~~~~~Lk~gG~l~~~~~~ 157 (204)
.+.++||+|+++..++++ ++++.+.|||||.+++.++.
T Consensus 85 -~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 85 -KPKPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred -CCCCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCC
Confidence 345789999999887663 46888999999999998754
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.3e-15 Score=117.30 Aligned_cols=145 Identities=21% Similarity=0.249 Sum_probs=107.6
Q ss_pred cccccc---CCccccccccccCCcccCChHHHHHHHHHHhccCC--CCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEc
Q psy10572 9 FFTRVV---NEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIK--PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEH 83 (204)
Q Consensus 9 ~~~~~~---~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~ 83 (204)
-.|-+| ...|....+..+.+.+++.+.....+...+...+. +..+|||+|||+|.++..+++.. +..+++++|+
T Consensus 87 ~~Pl~yi~g~~~F~g~~f~v~~~vlipr~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~-p~~~V~avDi 165 (307)
T PRK11805 87 RIPAAYLTNEAWFCGLEFYVDERVLVPRSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAF-PDAEVDAVDI 165 (307)
T ss_pred CccHHHHcCcceEcCcEEEECCCCcCCCCchHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHC-CCCEEEEEeC
Confidence 344444 34455666777778888777776655555442222 22689999999999999999987 6779999999
Q ss_pred CHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEEECCCcc----------------------------
Q psy10572 84 VMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYF---------------------------- 135 (204)
Q Consensus 84 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~---------------------------- 135 (204)
|+.+++.|++++..++ ...+++++++|+.+.. +..+||+|++|+++.
T Consensus 166 s~~al~~A~~n~~~~~----l~~~i~~~~~D~~~~l-~~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~ 240 (307)
T PRK11805 166 SPDALAVAEINIERHG----LEDRVTLIESDLFAAL-PGRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLD 240 (307)
T ss_pred CHHHHHHHHHHHHHhC----CCCcEEEEECchhhhC-CCCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHH
Confidence 9999999999988743 1246999999976543 335799999997652
Q ss_pred ---chhHHHHHhcCCCcEEEEEecCCC
Q psy10572 136 ---TIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 136 ---~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
.+++.+.++|+|||.+++.+....
T Consensus 241 ~~~~i~~~a~~~L~pgG~l~~E~g~~~ 267 (307)
T PRK11805 241 LVRRILAEAPDYLTEDGVLVVEVGNSR 267 (307)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEECcCH
Confidence 124677789999999999887653
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.6e-15 Score=99.23 Aligned_cols=89 Identities=26% Similarity=0.414 Sum_probs=74.3
Q ss_pred EEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEEECCCc
Q psy10572 55 LDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSY 134 (204)
Q Consensus 55 LdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~ 134 (204)
||+|||+|..+..+++. +..+++++|+++.+++.++++... .++.+..+|....++++++||+|++...+
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~--------~~~~~~~~d~~~l~~~~~sfD~v~~~~~~ 70 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKN--------EGVSFRQGDAEDLPFPDNSFDVVFSNSVL 70 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTT--------STEEEEESBTTSSSS-TT-EEEEEEESHG
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccc--------cCchheeehHHhCccccccccccccccce
Confidence 79999999999999998 346999999999999999998754 34669999988888888999999999888
Q ss_pred cc------hhHHHHHhcCCCcEEEE
Q psy10572 135 FT------IPQKLLDQLVPGGRMVM 153 (204)
Q Consensus 135 ~~------~~~~~~~~Lk~gG~l~~ 153 (204)
++ .++++.++|||||++++
T Consensus 71 ~~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 71 HHLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp GGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred eeccCHHHHHHHHHHHcCcCeEEeC
Confidence 76 45799999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.3e-15 Score=110.29 Aligned_cols=103 Identities=21% Similarity=0.266 Sum_probs=83.7
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEE
Q psy10572 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIH 129 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 129 (204)
++.+|||+|||+|.++..++... +.++++++|.++.+++.++++.+..+ .++++++.+|+... ...++||+|+
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~-~~~~V~~iD~s~~~~~~a~~~~~~~~-----~~~i~~i~~d~~~~-~~~~~fD~I~ 114 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIAR-PELKLTLLESNHKKVAFLREVKAELG-----LNNVEIVNGRAEDF-QHEEQFDVIT 114 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHhC-----CCCeEEEecchhhc-cccCCccEEE
Confidence 47899999999999999998765 66799999999999999998887643 35799999997764 3357899999
Q ss_pred ECCC--ccchhHHHHHhcCCCcEEEEEecCCC
Q psy10572 130 VSPS--YFTIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 130 ~~~~--~~~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
++.. +..+.+.+.++|+|||.+++......
T Consensus 115 s~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~ 146 (181)
T TIGR00138 115 SRALASLNVLLELTLNLLKVGGYFLAYKGKKY 146 (181)
T ss_pred ehhhhCHHHHHHHHHHhcCCCCEEEEEcCCCc
Confidence 9862 22355788899999999999766554
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.3e-15 Score=114.91 Aligned_cols=119 Identities=26% Similarity=0.371 Sum_probs=95.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC--CCCCCe
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY--EREAPY 125 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~ 125 (204)
.....+|||+|||+|.+++.++.+. +.+++++||+++.+.+.|+++++.+. ...+++++++|+.... ....+|
T Consensus 42 ~~~~~~IlDlGaG~G~l~L~la~r~-~~a~I~~VEiq~~~a~~A~~nv~ln~----l~~ri~v~~~Di~~~~~~~~~~~f 116 (248)
T COG4123 42 VPKKGRILDLGAGNGALGLLLAQRT-EKAKIVGVEIQEEAAEMAQRNVALNP----LEERIQVIEADIKEFLKALVFASF 116 (248)
T ss_pred cccCCeEEEecCCcCHHHHHHhccC-CCCcEEEEEeCHHHHHHHHHHHHhCc----chhceeEehhhHHHhhhccccccc
Confidence 3447899999999999999999997 45899999999999999999998854 3468999999977433 333579
Q ss_pred eEEEECCCccc------------------------hhHHHHHhcCCCcEEEEEecCCCCcceEEEEeecC
Q psy10572 126 DIIHVSPSYFT------------------------IPQKLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLA 171 (204)
Q Consensus 126 D~v~~~~~~~~------------------------~~~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~ 171 (204)
|+|++|+++.. +++.+.++||+||.+.++.+.......+..+.+..
T Consensus 117 D~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~~~~ 186 (248)
T COG4123 117 DLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLKSYN 186 (248)
T ss_pred CEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHHhcC
Confidence 99999999832 34677799999999999888776544444444433
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.9e-15 Score=118.11 Aligned_cols=104 Identities=19% Similarity=0.302 Sum_probs=84.2
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEE
Q psy10572 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIH 129 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 129 (204)
.+.+|||+|||+|.++..+++.. |..+++++|.|+.+++.++.+++.+... ...+++++..|..... +..+||+|+
T Consensus 228 ~~~~VLDLGCGtGvi~i~la~~~-P~~~V~~vD~S~~Av~~A~~N~~~n~~~--~~~~v~~~~~D~l~~~-~~~~fDlIl 303 (378)
T PRK15001 228 LEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMPE--ALDRCEFMINNALSGV-EPFRFNAVL 303 (378)
T ss_pred cCCeEEEEeccccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCcc--cCceEEEEEccccccC-CCCCEEEEE
Confidence 34699999999999999999987 7789999999999999999998765310 1236888888876543 335799999
Q ss_pred ECCCccc-----------hhHHHHHhcCCCcEEEEEecC
Q psy10572 130 VSPSYFT-----------IPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 130 ~~~~~~~-----------~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
+|++++. ++..+.++|+|||.++++...
T Consensus 304 sNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr 342 (378)
T PRK15001 304 CNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANR 342 (378)
T ss_pred ECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEec
Confidence 9999853 346788999999999998643
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.2e-15 Score=113.86 Aligned_cols=146 Identities=22% Similarity=0.308 Sum_probs=110.5
Q ss_pred CCccccccccccCCcccCChHHHHHHHHHHhccCCCCC-EEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHH
Q psy10572 15 NEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGA-RILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIK 93 (204)
Q Consensus 15 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~ 93 (204)
...|....+....+..++.++....+-..+. ...... +|||+|||+|.+++.+++.+ +.++|+|+|+|+.+++.|+.
T Consensus 75 ~~~f~gl~~~v~~~vliPr~dTe~Lve~~l~-~~~~~~~~ilDlGTGSG~iai~la~~~-~~~~V~a~Dis~~Al~~A~~ 152 (280)
T COG2890 75 SAEFGGLRFKVDEGVLIPRPDTELLVEAALA-LLLQLDKRILDLGTGSGAIAIALAKEG-PDAEVIAVDISPDALALARE 152 (280)
T ss_pred cCeecceeeeeCCCceecCCchHHHHHHHHH-hhhhcCCcEEEecCChHHHHHHHHhhC-cCCeEEEEECCHHHHHHHHH
Confidence 3456677777788888888887766655432 122222 79999999999999999998 77899999999999999999
Q ss_pred HhhhcCccccCccceEEEEecCCCCCCCCCCeeEEEECCCccc-------------------------------hhHHHH
Q psy10572 94 NIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFT-------------------------------IPQKLL 142 (204)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~-------------------------------~~~~~~ 142 (204)
|+..++ ..++.++..|+..... ++||+|++|+++-. +...+.
T Consensus 153 Na~~~~-----l~~~~~~~~dlf~~~~--~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~ 225 (280)
T COG2890 153 NAERNG-----LVRVLVVQSDLFEPLR--GKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAP 225 (280)
T ss_pred HHHHcC-----CccEEEEeeecccccC--CceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhH
Confidence 998865 2566777778666544 38999999998711 235777
Q ss_pred HhcCCCcEEEEEecCCCCcceEEEEee
Q psy10572 143 DQLVPGGRMVMPVGEPFKGQNLTIIDK 169 (204)
Q Consensus 143 ~~Lk~gG~l~~~~~~~~~~~~~~~~~~ 169 (204)
+.|+|||.+++.+...+.......+.+
T Consensus 226 ~~l~~~g~l~le~g~~q~~~v~~~~~~ 252 (280)
T COG2890 226 DILKPGGVLILEIGLTQGEAVKALFED 252 (280)
T ss_pred HHcCCCcEEEEEECCCcHHHHHHHHHh
Confidence 999999999999987775544444333
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.8e-15 Score=114.17 Aligned_cols=135 Identities=24% Similarity=0.319 Sum_probs=96.4
Q ss_pred cccccccccCCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhh
Q psy10572 18 YRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97 (204)
Q Consensus 18 y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~ 97 (204)
|++..+..+.+..++.+.....+...+......+.+|||+|||+|.++..+++.. +..+++|+|+++.+++.++.++..
T Consensus 55 ~~~~~~~~~~~~~~p~~~~~~l~~~~l~~~~~~~~~ilDig~G~G~~~~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~ 133 (251)
T TIGR03534 55 FYGLDFKVSPGVLIPRPDTEELVEAALERLKKGPLRVLDLGTGSGAIALALAKER-PDARVTAVDISPEALAVARKNAAR 133 (251)
T ss_pred EeceEEEECCCcccCCCChHHHHHHHHHhcccCCCeEEEEeCcHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHH
Confidence 3444444444444444443322222222112345699999999999999999987 667999999999999999999876
Q ss_pred cCccccCccceEEEEecCCCCCCCCCCeeEEEECCCccc--------------------------------hhHHHHHhc
Q psy10572 98 GNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFT--------------------------------IPQKLLDQL 145 (204)
Q Consensus 98 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~--------------------------------~~~~~~~~L 145 (204)
.+ ..++.++.+|+... .+.++||+|++|+++.. +++.+.++|
T Consensus 134 ~~-----~~~~~~~~~d~~~~-~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L 207 (251)
T TIGR03534 134 LG-----LDNVTFLQSDWFEP-LPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLL 207 (251)
T ss_pred cC-----CCeEEEEECchhcc-CcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhc
Confidence 43 34789999997764 34578999999887532 235777899
Q ss_pred CCCcEEEEEecCCC
Q psy10572 146 VPGGRMVMPVGEPF 159 (204)
Q Consensus 146 k~gG~l~~~~~~~~ 159 (204)
+|||.+++......
T Consensus 208 ~~gG~~~~~~~~~~ 221 (251)
T TIGR03534 208 KPGGWLLLEIGYDQ 221 (251)
T ss_pred ccCCEEEEEECccH
Confidence 99999999875544
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1e-14 Score=112.27 Aligned_cols=112 Identities=25% Similarity=0.353 Sum_probs=91.3
Q ss_pred HHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCC
Q psy10572 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGK 116 (204)
Q Consensus 37 ~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~ 116 (204)
.+.+++.+. ...+.+|||+|||.|.+++.+++.. |..+++-+|.|..+++.++.++..|. ..+..+...|..
T Consensus 147 S~lLl~~l~--~~~~~~vlDlGCG~Gvlg~~la~~~-p~~~vtmvDvn~~Av~~ar~Nl~~N~-----~~~~~v~~s~~~ 218 (300)
T COG2813 147 SRLLLETLP--PDLGGKVLDLGCGYGVLGLVLAKKS-PQAKLTLVDVNARAVESARKNLAANG-----VENTEVWASNLY 218 (300)
T ss_pred HHHHHHhCC--ccCCCcEEEeCCCccHHHHHHHHhC-CCCeEEEEecCHHHHHHHHHhHHHcC-----CCccEEEEeccc
Confidence 444555554 3445599999999999999999998 78899999999999999999999865 334467788876
Q ss_pred CCCCCCCCeeEEEECCCccc-----------hhHHHHHhcCCCcEEEEEecCC
Q psy10572 117 HGYEREAPYDIIHVSPSYFT-----------IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 117 ~~~~~~~~~D~v~~~~~~~~-----------~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
+.... +||.|++|++++. ++..+.++|++||.|+++....
T Consensus 219 ~~v~~--kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~ 269 (300)
T COG2813 219 EPVEG--KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANRH 269 (300)
T ss_pred ccccc--cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCC
Confidence 66543 8999999999975 5578889999999999988733
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2e-15 Score=109.97 Aligned_cols=101 Identities=20% Similarity=0.382 Sum_probs=88.3
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
+.....|.|+|||+|..+..++++. |.+.++|+|-|+.|++.|+.+ .++.+|..+|+.. +.++.+.|+
T Consensus 28 ~~~~~~v~DLGCGpGnsTelL~~Rw-P~A~i~GiDsS~~Mla~Aa~r----------lp~~~f~~aDl~~-w~p~~~~dl 95 (257)
T COG4106 28 LERPRRVVDLGCGPGNSTELLARRW-PDAVITGIDSSPAMLAKAAQR----------LPDATFEEADLRT-WKPEQPTDL 95 (257)
T ss_pred ccccceeeecCCCCCHHHHHHHHhC-CCCeEeeccCCHHHHHHHHHh----------CCCCceecccHhh-cCCCCccch
Confidence 4567799999999999999999999 889999999999999999776 4689999999655 566688999
Q ss_pred EEECCCccch------hHHHHHhcCCCcEEEEEecCCCC
Q psy10572 128 IHVSPSYFTI------PQKLLDQLVPGGRMVMPVGEPFK 160 (204)
Q Consensus 128 v~~~~~~~~~------~~~~~~~Lk~gG~l~~~~~~~~~ 160 (204)
+++|+.++++ +.++...|.|||.|.+.++.+..
T Consensus 96 lfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN~d 134 (257)
T COG4106 96 LFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDNLD 134 (257)
T ss_pred hhhhhhhhhccccHHHHHHHHHhhCCCceEEEECCCccC
Confidence 9999999874 47888999999999999887753
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.5e-16 Score=114.23 Aligned_cols=102 Identities=19% Similarity=0.301 Sum_probs=84.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEE
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDII 128 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 128 (204)
-++.+|||+|||-|.++..+++.. ++|+|+|.++.+++.|+.+....+ -++.+.+....+.....++||+|
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~G---a~VtgiD~se~~I~~Ak~ha~e~g------v~i~y~~~~~edl~~~~~~FDvV 128 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLG---ASVTGIDASEKPIEVAKLHALESG------VNIDYRQATVEDLASAGGQFDVV 128 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCC---CeeEEecCChHHHHHHHHhhhhcc------ccccchhhhHHHHHhcCCCccEE
Confidence 378999999999999999999975 499999999999999999887643 23556666655544444799999
Q ss_pred EECCCccchh------HHHHHhcCCCcEEEEEecCCC
Q psy10572 129 HVSPSYFTIP------QKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 129 ~~~~~~~~~~------~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
+|..+++|++ ..+.+.+||||++++++.+..
T Consensus 129 ~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt 165 (243)
T COG2227 129 TCMEVLEHVPDPESFLRACAKLVKPGGILFLSTINRT 165 (243)
T ss_pred EEhhHHHccCCHHHHHHHHHHHcCCCcEEEEeccccC
Confidence 9999988744 678899999999999988765
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=9.9e-15 Score=112.99 Aligned_cols=99 Identities=20% Similarity=0.310 Sum_probs=82.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
+.++.+|||+|||+|.++..+++.. +.++++|+|+++.+++.++++. +++.++.+|+.... +..+||+
T Consensus 29 ~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~----------~~~~~~~~d~~~~~-~~~~fD~ 96 (258)
T PRK01683 29 LENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRL----------PDCQFVEADIASWQ-PPQALDL 96 (258)
T ss_pred CcCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhC----------CCCeEEECchhccC-CCCCccE
Confidence 4677899999999999999999887 6679999999999999998763 35788888876443 3468999
Q ss_pred EEECCCccc------hhHHHHHhcCCCcEEEEEecCC
Q psy10572 128 IHVSPSYFT------IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 128 v~~~~~~~~------~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
|+++..+++ +++++.+.|+|||.+++.++..
T Consensus 97 v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~~~ 133 (258)
T PRK01683 97 IFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMPDN 133 (258)
T ss_pred EEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECCCC
Confidence 999988865 4578899999999999976543
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=9.3e-15 Score=113.27 Aligned_cols=110 Identities=17% Similarity=0.228 Sum_probs=87.9
Q ss_pred HHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCC
Q psy10572 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGK 116 (204)
Q Consensus 37 ~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~ 116 (204)
...+++.+. ++++.+|||+|||+|..+..+++.. .++++++|+++.+++.++++... ..++.+..+|+.
T Consensus 41 ~~~~l~~l~--l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~-------~~~i~~~~~D~~ 109 (263)
T PTZ00098 41 TTKILSDIE--LNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSD-------KNKIEFEANDIL 109 (263)
T ss_pred HHHHHHhCC--CCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCc-------CCceEEEECCcc
Confidence 445555554 6888999999999999998888754 36999999999999999987643 247899999987
Q ss_pred CCCCCCCCeeEEEECCCccc--------hhHHHHHhcCCCcEEEEEecC
Q psy10572 117 HGYEREAPYDIIHVSPSYFT--------IPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 117 ~~~~~~~~~D~v~~~~~~~~--------~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
...++.++||+|++...+.+ +++++.++|||||.+++..+.
T Consensus 110 ~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~ 158 (263)
T PTZ00098 110 KKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYC 158 (263)
T ss_pred cCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 66666689999999654432 457889999999999997653
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.2e-14 Score=108.21 Aligned_cols=123 Identities=22% Similarity=0.309 Sum_probs=94.6
Q ss_pred ccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceE
Q psy10572 30 DISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQ 109 (204)
Q Consensus 30 ~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~ 109 (204)
.++...+....+..+. +.++.+|||+|||+|.++..+++..++.++++++|.++.+++.+++++...+ ...++.
T Consensus 22 ~~t~~~~r~~~l~~l~--~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g----~~~~v~ 95 (198)
T PRK00377 22 PMTKEEIRALALSKLR--LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFG----VLNNIV 95 (198)
T ss_pred CCCHHHHHHHHHHHcC--CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhC----CCCCeE
Confidence 3555666655556555 7888999999999999999998876556799999999999999999987643 135788
Q ss_pred EEEecCCCCCCC-CCCeeEEEECCCc---cchhHHHHHhcCCCcEEEEEecCC
Q psy10572 110 FVVWNGKHGYER-EAPYDIIHVSPSY---FTIPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 110 ~~~~d~~~~~~~-~~~~D~v~~~~~~---~~~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
++.+|..+.... .+.||.|+++... ..+++.+.+.|+|||++++.....
T Consensus 96 ~~~~d~~~~l~~~~~~~D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 148 (198)
T PRK00377 96 LIKGEAPEILFTINEKFDRIFIGGGSEKLKEIISASWEIIKKGGRIVIDAILL 148 (198)
T ss_pred EEEechhhhHhhcCCCCCEEEECCCcccHHHHHHHHHHHcCCCcEEEEEeecH
Confidence 888887643222 3579999996543 446788899999999998855433
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.4e-14 Score=113.50 Aligned_cols=142 Identities=25% Similarity=0.314 Sum_probs=103.5
Q ss_pred CCccccccccccCCcccCChHHHHHHHHHHhccC--CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHH
Q psy10572 15 NEPYRIKSRQIGYGADISSPHIHAQMLELLKDKI--KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSI 92 (204)
Q Consensus 15 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~ 92 (204)
...|++..+..+.+..++.+.....+-..+.... .+..+|||+|||+|.++..++... +..+++++|+|+.+++.|+
T Consensus 77 ~~~f~g~~f~v~~~vliPr~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~-~~~~v~avDis~~al~~a~ 155 (284)
T TIGR00536 77 SKEFYGLEFFVNEHVLIPRPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEF-PNAEVIAVDISPDALAVAE 155 (284)
T ss_pred cceEcCeEEEECCCCcCCCCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHH
Confidence 3455566666777777766554444333332211 223699999999999999999987 6679999999999999999
Q ss_pred HHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEEECCCccc-------------------------------hhHHH
Q psy10572 93 KNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFT-------------------------------IPQKL 141 (204)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~-------------------------------~~~~~ 141 (204)
+++..++ ...++.++.+|+.+.. +..+||+|++|+++.. +++.+
T Consensus 156 ~n~~~~~----~~~~v~~~~~d~~~~~-~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a 230 (284)
T TIGR00536 156 ENAEKNQ----LEHRVEFIQSNLFEPL-AGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELA 230 (284)
T ss_pred HHHHHcC----CCCcEEEEECchhccC-cCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHH
Confidence 9987644 1235999999977643 3347999999976521 23567
Q ss_pred HHhcCCCcEEEEEecCCCCcc
Q psy10572 142 LDQLVPGGRMVMPVGEPFKGQ 162 (204)
Q Consensus 142 ~~~Lk~gG~l~~~~~~~~~~~ 162 (204)
.++|+|||.+++.+...+...
T Consensus 231 ~~~L~~gG~l~~e~g~~q~~~ 251 (284)
T TIGR00536 231 PDYLKPNGFLVCEIGNWQQKS 251 (284)
T ss_pred HHhccCCCEEEEEECccHHHH
Confidence 789999999999998776443
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.1e-14 Score=112.02 Aligned_cols=111 Identities=15% Similarity=0.227 Sum_probs=86.2
Q ss_pred HHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHh-CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCC
Q psy10572 39 QMLELLKDKIKPGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKH 117 (204)
Q Consensus 39 ~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 117 (204)
.+...+...+.++.+|||+|||+|..+..+++.. .+.++++|+|+|+.+++.|++++...+ ...+++++.+|+..
T Consensus 45 ~~~~~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~----~~~~v~~~~~d~~~ 120 (247)
T PRK15451 45 MIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK----APTPVDVIEGDIRD 120 (247)
T ss_pred HHHHHHHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC----CCCCeEEEeCChhh
Confidence 3333333345788899999999999998888753 266799999999999999999987633 12478999999776
Q ss_pred CCCCCCCeeEEEECCCccc--------hhHHHHHhcCCCcEEEEEe
Q psy10572 118 GYEREAPYDIIHVSPSYFT--------IPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 118 ~~~~~~~~D~v~~~~~~~~--------~~~~~~~~Lk~gG~l~~~~ 155 (204)
... ..+|+|+++..+++ +++++.+.|+|||.+++..
T Consensus 121 ~~~--~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 121 IAI--ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred CCC--CCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 544 35899998866543 5689999999999999965
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.3e-14 Score=107.80 Aligned_cols=105 Identities=18% Similarity=0.155 Sum_probs=81.4
Q ss_pred HHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC
Q psy10572 39 QMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG 118 (204)
Q Consensus 39 ~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~ 118 (204)
.+.+.+. ..++.+|||+|||+|..+..+++.. .+|+|+|+|+.+++.++++..... ..++++...|+...
T Consensus 21 ~l~~~l~--~~~~~~vLDiGcG~G~~a~~La~~g---~~V~gvD~S~~~i~~a~~~~~~~~-----~~~v~~~~~d~~~~ 90 (197)
T PRK11207 21 EVLEAVK--VVKPGKTLDLGCGNGRNSLYLAANG---FDVTAWDKNPMSIANLERIKAAEN-----LDNLHTAVVDLNNL 90 (197)
T ss_pred HHHHhcc--cCCCCcEEEECCCCCHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHHcC-----CCcceEEecChhhC
Confidence 3444444 4466899999999999999999864 499999999999999998877643 34688888887654
Q ss_pred CCCCCCeeEEEECCCccc--------hhHHHHHhcCCCcEEEEE
Q psy10572 119 YEREAPYDIIHVSPSYFT--------IPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 119 ~~~~~~~D~v~~~~~~~~--------~~~~~~~~Lk~gG~l~~~ 154 (204)
..+ ++||+|+++..+++ +++.+.++|+|||.+++.
T Consensus 91 ~~~-~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 91 TFD-GEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred CcC-CCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 443 57999999877643 457888999999996553
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.4e-14 Score=112.99 Aligned_cols=103 Identities=27% Similarity=0.395 Sum_probs=86.0
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
+.++.+|||+|||+|..+..+++..++.++++++|+++.+++.|+++....+ .++++++.+|+.....+.++||+
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g-----~~~v~~~~~d~~~l~~~~~~fD~ 149 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAG-----YTNVEFRLGEIEALPVADNSVDV 149 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcC-----CCCEEEEEcchhhCCCCCCceeE
Confidence 5788999999999999988888776566789999999999999999877633 35788999998765556678999
Q ss_pred EEECCCccc------hhHHHHHhcCCCcEEEEEe
Q psy10572 128 IHVSPSYFT------IPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 128 v~~~~~~~~------~~~~~~~~Lk~gG~l~~~~ 155 (204)
|+++..+++ +++++.++|||||++++..
T Consensus 150 Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 150 IISNCVINLSPDKERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred EEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 999876543 5689999999999999864
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.3e-15 Score=116.28 Aligned_cols=103 Identities=19% Similarity=0.262 Sum_probs=83.9
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEE
Q psy10572 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIH 129 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 129 (204)
++.+|||||||+|.++..+++. +++|+|+|.++.+++.|+.+..... ...+++++.+++.+.....++||+|+
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~~----~~~~i~~~~~dae~l~~~~~~FD~Vi 203 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHADMDP----VTSTIEYLCTTAEKLADEGRKFDAVL 203 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcC----cccceeEEecCHHHhhhccCCCCEEE
Confidence 4569999999999999988874 3599999999999999998765422 12478999998766555557899999
Q ss_pred ECCCccc------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 130 VSPSYFT------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 130 ~~~~~~~------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
+..++++ +++.+.++|||||.+++.+.+..
T Consensus 204 ~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~nr~ 239 (322)
T PLN02396 204 SLEVIEHVANPAEFCKSLSALTIPNGATVLSTINRT 239 (322)
T ss_pred EhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEECCcC
Confidence 9988776 45889999999999999987654
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.5e-15 Score=109.89 Aligned_cols=105 Identities=16% Similarity=0.161 Sum_probs=84.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecC-CCCC--CCCCCe
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNG-KHGY--EREAPY 125 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~-~~~~--~~~~~~ 125 (204)
.++.+|||+|||+|..+..+++.. +..+++++|+++.+++.+++++.... .+++.++++|+ .... .+.++|
T Consensus 39 ~~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~-----~~~v~~~~~d~~~~l~~~~~~~~~ 112 (202)
T PRK00121 39 NDAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEG-----LTNLRLLCGDAVEVLLDMFPDGSL 112 (202)
T ss_pred CCCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcC-----CCCEEEEecCHHHHHHHHcCcccc
Confidence 467899999999999999999887 66799999999999999999887643 36799999997 3222 445789
Q ss_pred eEEEECCCcc--------------chhHHHHHhcCCCcEEEEEecCCC
Q psy10572 126 DIIHVSPSYF--------------TIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 126 D~v~~~~~~~--------------~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
|.|+++.+.+ .+++.+.++|+|||.+++.+....
T Consensus 113 D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~ 160 (202)
T PRK00121 113 DRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEG 160 (202)
T ss_pred ceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHH
Confidence 9999875432 256899999999999999775443
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.8e-15 Score=106.97 Aligned_cols=127 Identities=19% Similarity=0.250 Sum_probs=88.0
Q ss_pred ccccccccCCcccCChHHHHHHHHH-HhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhh
Q psy10572 19 RIKSRQIGYGADISSPHIHAQMLEL-LKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97 (204)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~ 97 (204)
.+...|+++........-...++.. +. -..-.++||+|||.|.++..|+.++. +++++|+++.+++.|++++..
T Consensus 13 la~~DPW~~~~~~YE~~K~~~~l~aaLp--~~ry~~alEvGCs~G~lT~~LA~rCd---~LlavDis~~Al~~Ar~Rl~~ 87 (201)
T PF05401_consen 13 LANDDPWGFETSWYERRKYRATLLAALP--RRRYRRALEVGCSIGVLTERLAPRCD---RLLAVDISPRALARARERLAG 87 (201)
T ss_dssp HTSSSGGGTTT-HHHHHHHHHHHHHHHT--TSSEEEEEEE--TTSHHHHHHGGGEE---EEEEEES-HHHHHHHHHHTTT
T ss_pred hCCCCCCCCCCCHHHHHHHHHHHHHhcC--ccccceeEecCCCccHHHHHHHHhhC---ceEEEeCCHHHHHHHHHhcCC
Confidence 4556667765554444333334332 32 24447999999999999999999884 999999999999999999875
Q ss_pred cCccccCccceEEEEecCCCCCCCCCCeeEEEECCCccc---------hhHHHHHhcCCCcEEEEEecCC
Q psy10572 98 GNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFT---------IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 98 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~---------~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
.+++++++.++...+ +.++||+|++....+. .+..+...|+|||.+++..+.+
T Consensus 88 -------~~~V~~~~~dvp~~~-P~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd 149 (201)
T PF05401_consen 88 -------LPHVEWIQADVPEFW-PEGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARD 149 (201)
T ss_dssp --------SSEEEEES-TTT----SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H
T ss_pred -------CCCeEEEECcCCCCC-CCCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecC
Confidence 468999999987654 5589999999877654 3366778899999999977643
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.3e-14 Score=106.49 Aligned_cols=125 Identities=21% Similarity=0.345 Sum_probs=95.7
Q ss_pred CCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCcc
Q psy10572 27 YGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQG 106 (204)
Q Consensus 27 ~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~ 106 (204)
.+..++.+.+...+...+. +.++.+|||+|||+|.++..+++.. +.++++++|+++.+++.+++++...+ ..
T Consensus 19 ~~~p~t~~~v~~~l~~~l~--~~~~~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~~~-----~~ 90 (196)
T PRK07402 19 PGIPLTKREVRLLLISQLR--LEPDSVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDRFG-----VK 90 (196)
T ss_pred CCCCCCHHHHHHHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhC-----CC
Confidence 4555677777777777775 6788899999999999999998765 56799999999999999999987643 35
Q ss_pred ceEEEEecCCCCCCC-CCCeeEEEECCC--ccchhHHHHHhcCCCcEEEEEecCCC
Q psy10572 107 RVQFVVWNGKHGYER-EAPYDIIHVSPS--YFTIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 107 ~~~~~~~d~~~~~~~-~~~~D~v~~~~~--~~~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
+++++.+|+...... ...+|.++.... ...+++.+.++|+|||.+++..++..
T Consensus 91 ~v~~~~~d~~~~~~~~~~~~d~v~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~ 146 (196)
T PRK07402 91 NVEVIEGSAPECLAQLAPAPDRVCIEGGRPIKEILQAVWQYLKPGGRLVATASSLE 146 (196)
T ss_pred CeEEEECchHHHHhhCCCCCCEEEEECCcCHHHHHHHHHHhcCCCeEEEEEeecHH
Confidence 789999886542111 123576666433 24577899999999999999877653
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-14 Score=112.35 Aligned_cols=104 Identities=21% Similarity=0.251 Sum_probs=84.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC-CCCCCeeE
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-EREAPYDI 127 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~ 127 (204)
.++.+|||+|||+|..+..+++.. .+|+++|+|+.+++.|++++...+ ..++++++++|..+.. ...++||+
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g---~~v~~vD~s~~~l~~a~~~~~~~g----~~~~v~~~~~d~~~l~~~~~~~fD~ 115 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELG---HQVILCDLSAEMIQRAKQAAEAKG----VSDNMQFIHCAAQDIAQHLETPVDL 115 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcC----CccceEEEEcCHHHHhhhcCCCCCE
Confidence 456799999999999999999864 499999999999999999887633 1357899998876432 33478999
Q ss_pred EEECCCccc------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 128 IHVSPSYFT------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 128 v~~~~~~~~------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
|++..++++ +++.+.++|||||++++..++..
T Consensus 116 V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~ 153 (255)
T PRK11036 116 ILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNAN 153 (255)
T ss_pred EEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECcc
Confidence 999887755 45789999999999998776643
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.3e-14 Score=111.89 Aligned_cols=97 Identities=12% Similarity=0.124 Sum_probs=79.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEE
Q psy10572 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIH 129 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 129 (204)
+..+|||+|||+|.++..+.... .+++++|+|+.+++.++.+.. ...++.+|+....++.++||+|+
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~---~~v~~~D~s~~~l~~a~~~~~----------~~~~~~~d~~~~~~~~~~fD~V~ 108 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERG---SQVTALDLSPPMLAQARQKDA----------ADHYLAGDIESLPLATATFDLAW 108 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcC---CeEEEEECCHHHHHHHHhhCC----------CCCEEEcCcccCcCCCCcEEEEE
Confidence 46799999999999998887643 599999999999999987642 24577888776666667899999
Q ss_pred ECCCccc------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 130 VSPSYFT------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 130 ~~~~~~~------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
++..+++ ++.++.++|+|||.++++++...
T Consensus 109 s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~ 144 (251)
T PRK10258 109 SNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQG 144 (251)
T ss_pred ECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCC
Confidence 9887654 46889999999999999886654
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.6e-14 Score=109.14 Aligned_cols=143 Identities=13% Similarity=0.113 Sum_probs=100.2
Q ss_pred CCccccccccccCCcccCChHHHHHHHHHHhccC---CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHH
Q psy10572 15 NEPYRIKSRQIGYGADISSPHIHAQMLELLKDKI---KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESS 91 (204)
Q Consensus 15 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a 91 (204)
...|.+..+..+.+.++..+.. ..+++.+...+ .+..+|||+|||+|.++..+++.. +..+++++|+|+.+++.|
T Consensus 49 ~~~f~g~~~~v~~~vf~pr~~T-e~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~-~~~~v~~vDis~~al~~A 126 (251)
T TIGR03704 49 WAEFCGLRIAVDPGVFVPRRRT-EFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAAL-DGIELHAADIDPAAVRCA 126 (251)
T ss_pred cCeEcCeEEEECCCCcCCCccH-HHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhC-CCCEEEEEECCHHHHHHH
Confidence 4455566666777777644433 33333332222 234589999999999999999876 556899999999999999
Q ss_pred HHHhhhcCccccCccceEEEEecCCCCCCC--CCCeeEEEECCCcc--------------------------------ch
Q psy10572 92 IKNIDKGNSELLDQGRVQFVVWNGKHGYER--EAPYDIIHVSPSYF--------------------------------TI 137 (204)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~D~v~~~~~~~--------------------------------~~ 137 (204)
++++..++ .+++.+|+.+.... .++||+|++|+++. .+
T Consensus 127 ~~N~~~~~--------~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i 198 (251)
T TIGR03704 127 RRNLADAG--------GTVHEGDLYDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRV 198 (251)
T ss_pred HHHHHHcC--------CEEEEeechhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHH
Confidence 99987632 47888887653321 25799999998863 12
Q ss_pred hHHHHHhcCCCcEEEEEecCCCCcceEEEE
Q psy10572 138 PQKLLDQLVPGGRMVMPVGEPFKGQNLTII 167 (204)
Q Consensus 138 ~~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~ 167 (204)
++.+.++|+|||++++.+...+.......+
T Consensus 199 ~~~a~~~L~~gG~l~l~~~~~~~~~v~~~l 228 (251)
T TIGR03704 199 AAGAPDWLAPGGHLLVETSERQAPLAVEAF 228 (251)
T ss_pred HHHHHHhcCCCCEEEEEECcchHHHHHHHH
Confidence 345668999999999998876654433333
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.3e-14 Score=107.63 Aligned_cols=105 Identities=12% Similarity=0.164 Sum_probs=86.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC---CCCCCCe
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG---YEREAPY 125 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~~ 125 (204)
+....|||||||+|.++..+++.. +..+++|+|+++.+++.|+.++...+ ..+++++++|+... ..+.+++
T Consensus 15 ~~~~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~~~-----l~ni~~i~~d~~~~~~~~~~~~~~ 88 (194)
T TIGR00091 15 NKAPLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANKLG-----LKNLHVLCGDANELLDKFFPDGSL 88 (194)
T ss_pred CCCceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHhC-----CCCEEEEccCHHHHHHhhCCCCce
Confidence 456799999999999999999987 77899999999999999998887643 45899999997642 2344689
Q ss_pred eEEEECCCcc--------------chhHHHHHhcCCCcEEEEEecCCC
Q psy10572 126 DIIHVSPSYF--------------TIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 126 D~v~~~~~~~--------------~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
|.|+++.+.+ .+++.+.++|||||.|++.+....
T Consensus 89 d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~ 136 (194)
T TIGR00091 89 SKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEP 136 (194)
T ss_pred eEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHH
Confidence 9999987553 256889999999999999876554
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.8e-15 Score=100.31 Aligned_cols=100 Identities=27% Similarity=0.384 Sum_probs=81.5
Q ss_pred CCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC--CCCCCeeEE
Q psy10572 51 GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY--EREAPYDII 128 (204)
Q Consensus 51 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~v 128 (204)
|.+|||+|||+|.++..+++.. ..+++++|+++..++.++.++.... ...+++++.+|..... .+.++||+|
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~D~I 74 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNG----LDDRVEVIVGDARDLPEPLPDGKFDLI 74 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCT----TTTTEEEEESHHHHHHHTCTTT-EEEE
T ss_pred CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHcc----CCceEEEEECchhhchhhccCceeEEE
Confidence 4689999999999999999886 4599999999999999999988743 1357999999976543 456889999
Q ss_pred EECCCccc--------------hhHHHHHhcCCCcEEEEEec
Q psy10572 129 HVSPSYFT--------------IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 129 ~~~~~~~~--------------~~~~~~~~Lk~gG~l~~~~~ 156 (204)
++|+++.. +++.+.++|+|||.+++.++
T Consensus 75 v~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 75 VTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp EE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 99998853 35788999999999999875
|
... |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.3e-14 Score=111.34 Aligned_cols=126 Identities=24% Similarity=0.175 Sum_probs=97.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
+.||.+|||||||.|.+++.+++.. +++|+|+++|++..+.++++++..+ ...+++++..|..+.. ++||.
T Consensus 70 L~~G~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~~g----l~~~v~v~l~d~rd~~---e~fDr 140 (283)
T COG2230 70 LKPGMTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAARG----LEDNVEVRLQDYRDFE---EPFDR 140 (283)
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHHcC----CCcccEEEeccccccc---cccce
Confidence 7999999999999999999999986 3699999999999999999988754 1248999999876654 34999
Q ss_pred EEECCCccc--------hhHHHHHhcCCCcEEEEEecCCCCcceEEEEeecCCceEEEeeeeeeeeeeec
Q psy10572 128 IHVSPSYFT--------IPQKLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYTIVTTVVRGVRTNPL 189 (204)
Q Consensus 128 v~~~~~~~~--------~~~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl 189 (204)
|++...+++ +++.+.+.|+|||.+++.+......... ....|.. .-+++-..+|-
T Consensus 141 IvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~------~~~~~i~-~yiFPgG~lPs 203 (283)
T COG2230 141 IVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFR------RFPDFID-KYIFPGGELPS 203 (283)
T ss_pred eeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccc------cchHHHH-HhCCCCCcCCC
Confidence 999887765 5689999999999999877655432221 3334444 45555556663
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.9e-14 Score=111.43 Aligned_cols=125 Identities=25% Similarity=0.335 Sum_probs=88.2
Q ss_pred cccccccCCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcC
Q psy10572 20 IKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGN 99 (204)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~ 99 (204)
|....+|.|.+.++. ..++.+.....++.+|||+|||+|.+++..++... ..++|+|++|.+++.++.|+..|+
T Consensus 136 DPGlAFGTG~HpTT~----lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA--~~v~g~DiDp~AV~aa~eNa~~N~ 209 (300)
T COG2264 136 DPGLAFGTGTHPTTS----LCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLGA--KKVVGVDIDPQAVEAARENARLNG 209 (300)
T ss_pred ccccccCCCCChhHH----HHHHHHHHhhcCCCEEEEecCChhHHHHHHHHcCC--ceEEEecCCHHHHHHHHHHHHHcC
Confidence 334455666665444 33444444457999999999999999999999753 489999999999999999999866
Q ss_pred ccccCccceEEEEecCCCCCCCCCCeeEEEECCCcc---chhHHHHHhcCCCcEEEEEe
Q psy10572 100 SELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYF---TIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 100 ~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~---~~~~~~~~~Lk~gG~l~~~~ 155 (204)
.+ ..++....+ .......++||+|++|.... .+...+.+.|+|||+++++=
T Consensus 210 v~----~~~~~~~~~-~~~~~~~~~~DvIVANILA~vl~~La~~~~~~lkpgg~lIlSG 263 (300)
T COG2264 210 VE----LLVQAKGFL-LLEVPENGPFDVIVANILAEVLVELAPDIKRLLKPGGRLILSG 263 (300)
T ss_pred Cc----hhhhccccc-chhhcccCcccEEEehhhHHHHHHHHHHHHHHcCCCceEEEEe
Confidence 21 112222222 12223346899999997433 35578899999999999954
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.4e-14 Score=109.55 Aligned_cols=109 Identities=20% Similarity=0.252 Sum_probs=88.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
+.++.+|||+|||+|..+..++...++.+.++++|+++.+++.++++++..+ ..++.++..|........+.||.
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g-----~~~v~~~~~D~~~~~~~~~~fD~ 143 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCG-----VLNVAVTNFDGRVFGAAVPKFDA 143 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcC-----CCcEEEecCCHHHhhhhccCCCE
Confidence 6788999999999999999999887555799999999999999999998744 35788898886643333356999
Q ss_pred EEECCCccc----------------------------hhHHHHHhcCCCcEEEEEecCCCCc
Q psy10572 128 IHVSPSYFT----------------------------IPQKLLDQLVPGGRMVMPVGEPFKG 161 (204)
Q Consensus 128 v~~~~~~~~----------------------------~~~~~~~~Lk~gG~l~~~~~~~~~~ 161 (204)
|++++++.. +++.+.+.|||||+++.++++....
T Consensus 144 Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~ 205 (264)
T TIGR00446 144 ILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPE 205 (264)
T ss_pred EEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChH
Confidence 999877532 4467778999999999998877654
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.6e-14 Score=121.23 Aligned_cols=139 Identities=18% Similarity=0.261 Sum_probs=106.0
Q ss_pred CCccccccccccCCcccCChHHHHHHHHHHhcc-------------------------CCCCCEEEEEcCCCcHHHHHHH
Q psy10572 15 NEPYRIKSRQIGYGADISSPHIHAQMLELLKDK-------------------------IKPGARILDIGSGSGYLTACLA 69 (204)
Q Consensus 15 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------------------------~~~~~~vLdiG~G~G~~~~~l~ 69 (204)
...|+...+..+.+..++.++....+-..+... ..++.+|||+|||+|.++..++
T Consensus 78 ~~~F~g~~f~V~~~VLIPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~iai~la 157 (506)
T PRK01544 78 VKEFYSREFIVNKHVLIPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGSGCIAISLL 157 (506)
T ss_pred cCEEcCcEEEeCCCcccCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCchhHHHHHHH
Confidence 567788888899999998888765554333211 0134689999999999999999
Q ss_pred HHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEEECCCccc-------------
Q psy10572 70 YMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFT------------- 136 (204)
Q Consensus 70 ~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~------------- 136 (204)
... +.++++++|+|+.+++.|+.++..++ ...++.++.+|+.... +.++||+|++|+++..
T Consensus 158 ~~~-p~~~v~avDis~~al~~A~~N~~~~~----l~~~v~~~~~D~~~~~-~~~~fDlIvsNPPYi~~~~~~~l~~~v~~ 231 (506)
T PRK01544 158 CEL-PNANVIATDISLDAIEVAKSNAIKYE----VTDRIQIIHSNWFENI-EKQKFDFIVSNPPYISHSEKSEMAIETIN 231 (506)
T ss_pred HHC-CCCeEEEEECCHHHHHHHHHHHHHcC----CccceeeeecchhhhC-cCCCccEEEECCCCCCchhhhhcCchhhc
Confidence 887 67799999999999999999987643 1246889999976543 3457999999987521
Q ss_pred -------------------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 137 -------------------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 137 -------------------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
+++.+.++|+|||.+++.+...+
T Consensus 232 ~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~q 273 (506)
T PRK01544 232 YEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFKQ 273 (506)
T ss_pred cCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCch
Confidence 22466689999999999876554
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.6e-14 Score=104.78 Aligned_cols=105 Identities=18% Similarity=0.229 Sum_probs=78.5
Q ss_pred HHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC
Q psy10572 39 QMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG 118 (204)
Q Consensus 39 ~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~ 118 (204)
.+.+.+. ..++.+|||+|||+|..+..+++.. .+|+|+|+|+.+++.++++....+ . ++.+...|....
T Consensus 21 ~l~~~~~--~~~~~~vLDiGcG~G~~a~~la~~g---~~V~~iD~s~~~l~~a~~~~~~~~-----~-~v~~~~~d~~~~ 89 (195)
T TIGR00477 21 AVREAVK--TVAPCKTLDLGCGQGRNSLYLSLAG---YDVRAWDHNPASIASVLDMKAREN-----L-PLRTDAYDINAA 89 (195)
T ss_pred HHHHHhc--cCCCCcEEEeCCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHHhC-----C-CceeEeccchhc
Confidence 3444444 4456799999999999999999853 499999999999999988876533 1 356666775433
Q ss_pred CCCCCCeeEEEECCCccc--------hhHHHHHhcCCCcEEEEEe
Q psy10572 119 YEREAPYDIIHVSPSYFT--------IPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 119 ~~~~~~~D~v~~~~~~~~--------~~~~~~~~Lk~gG~l~~~~ 155 (204)
..+ ++||+|+++..+++ +++.+.++|+|||.+++..
T Consensus 90 ~~~-~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~ 133 (195)
T TIGR00477 90 ALN-EDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVA 133 (195)
T ss_pred ccc-CCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 333 57999998876643 4578889999999966544
|
Part of a tellurite-reducing operon tehA and tehB |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.8e-14 Score=112.28 Aligned_cols=110 Identities=21% Similarity=0.292 Sum_probs=86.0
Q ss_pred HHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCC
Q psy10572 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKH 117 (204)
Q Consensus 38 ~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 117 (204)
..+++.+. .....+|||+|||+|.++..+++.. +..+++++|+++.+++.++.+++.+. -..+++..|...
T Consensus 186 ~lLl~~l~--~~~~g~VLDlGCG~G~ls~~la~~~-p~~~v~~vDis~~Al~~A~~nl~~n~------l~~~~~~~D~~~ 256 (342)
T PRK09489 186 QLLLSTLT--PHTKGKVLDVGCGAGVLSAVLARHS-PKIRLTLSDVSAAALESSRATLAANG------LEGEVFASNVFS 256 (342)
T ss_pred HHHHHhcc--ccCCCeEEEeccCcCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcC------CCCEEEEccccc
Confidence 44455444 2345689999999999999999986 66799999999999999999988754 134667777654
Q ss_pred CCCCCCCeeEEEECCCccc-----------hhHHHHHhcCCCcEEEEEecCC
Q psy10572 118 GYEREAPYDIIHVSPSYFT-----------IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 118 ~~~~~~~~D~v~~~~~~~~-----------~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
.. .++||+|++|+++++ ++..+.++|+|||.+++.....
T Consensus 257 ~~--~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~ 306 (342)
T PRK09489 257 DI--KGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANAF 306 (342)
T ss_pred cc--CCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeCC
Confidence 32 468999999998864 4477889999999999977653
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.5e-14 Score=106.92 Aligned_cols=103 Identities=16% Similarity=0.272 Sum_probs=83.2
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhC-CCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCee
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAG-PEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYD 126 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D 126 (204)
+.++.+|||+|||+|..+..+++.+. +.++++|+|+|+.+++.|++++.... ...+++++++|+.....+ .+|
T Consensus 51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~----~~~~v~~~~~d~~~~~~~--~~d 124 (239)
T TIGR00740 51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH----SEIPVEILCNDIRHVEIK--NAS 124 (239)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC----CCCCeEEEECChhhCCCC--CCC
Confidence 46778999999999999999988752 56799999999999999999886532 124689999998765443 589
Q ss_pred EEEECCCccc--------hhHHHHHhcCCCcEEEEEec
Q psy10572 127 IIHVSPSYFT--------IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 127 ~v~~~~~~~~--------~~~~~~~~Lk~gG~l~~~~~ 156 (204)
+|+++..+++ +++++.+.|+|||.+++...
T Consensus 125 ~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 125 MVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred EEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 9988877655 35788899999999999754
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.8e-14 Score=111.27 Aligned_cols=101 Identities=20% Similarity=0.243 Sum_probs=78.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEE
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDII 128 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 128 (204)
.++.+|||||||+|.++..++... + ..|+|+|+|+.++..++....... ...++.++.+++..... .++||+|
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~g-~-~~V~GiD~S~~~l~q~~a~~~~~~----~~~~i~~~~~d~e~lp~-~~~FD~V 193 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGAG-A-KLVVGIDPSQLFLCQFEAVRKLLG----NDQRAHLLPLGIEQLPA-LKAFDTV 193 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcC-C-CEEEEEcCCHHHHHHHHHHHHhcC----CCCCeEEEeCCHHHCCC-cCCcCEE
Confidence 467899999999999999998875 3 269999999998876544322211 12478999988776554 5789999
Q ss_pred EECCCccc------hhHHHHHhcCCCcEEEEEec
Q psy10572 129 HVSPSYFT------IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 129 ~~~~~~~~------~~~~~~~~Lk~gG~l~~~~~ 156 (204)
++...+++ +++++.+.|+|||.+++...
T Consensus 194 ~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~ 227 (322)
T PRK15068 194 FSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETL 227 (322)
T ss_pred EECChhhccCCHHHHHHHHHHhcCCCcEEEEEEE
Confidence 99887765 45899999999999998753
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.7e-14 Score=117.70 Aligned_cols=110 Identities=19% Similarity=0.338 Sum_probs=88.4
Q ss_pred HHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCC
Q psy10572 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKH 117 (204)
Q Consensus 38 ~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 117 (204)
..+++.+. +.++.+|||+|||+|..+..+++.. +++++|+|+|+.+++.|+++.... ..++++..+|+..
T Consensus 256 e~l~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~~------~~~v~~~~~d~~~ 325 (475)
T PLN02336 256 KEFVDKLD--LKPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIGR------KCSVEFEVADCTK 325 (475)
T ss_pred HHHHHhcC--CCCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhcC------CCceEEEEcCccc
Confidence 33444443 5677899999999999999998875 359999999999999998876431 2478999999877
Q ss_pred CCCCCCCeeEEEECCCccc------hhHHHHHhcCCCcEEEEEecC
Q psy10572 118 GYEREAPYDIIHVSPSYFT------IPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 118 ~~~~~~~~D~v~~~~~~~~------~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
...+.++||+|++...+.+ +++++.++|+|||.+++..+.
T Consensus 326 ~~~~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 371 (475)
T PLN02336 326 KTYPDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYC 371 (475)
T ss_pred CCCCCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEec
Confidence 6666678999999877765 458999999999999997653
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.8e-14 Score=108.48 Aligned_cols=111 Identities=22% Similarity=0.292 Sum_probs=85.8
Q ss_pred HHHHHHHhccC-CCCCEEEEEcCCCcHHHHHHHHHhCC--CceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEec
Q psy10572 38 AQMLELLKDKI-KPGARILDIGSGSGYLTACLAYMAGP--EGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWN 114 (204)
Q Consensus 38 ~~~~~~l~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d 114 (204)
..+.+.+...+ .+..+|||+|||+|.++..+++..+. ...++|+|+|+.+++.|+++. +++.+..+|
T Consensus 72 ~~i~~~l~~~l~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~----------~~~~~~~~d 141 (272)
T PRK11088 72 DAVANLLAERLDEKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY----------PQVTFCVAS 141 (272)
T ss_pred HHHHHHHHHhcCCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC----------CCCeEEEee
Confidence 33334444332 34578999999999999999887632 237999999999999997652 467888999
Q ss_pred CCCCCCCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEEecCCC
Q psy10572 115 GKHGYEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 115 ~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
....+++.++||+|++... ....+++.++|||||++++..++..
T Consensus 142 ~~~lp~~~~sfD~I~~~~~-~~~~~e~~rvLkpgG~li~~~p~~~ 185 (272)
T PRK11088 142 SHRLPFADQSLDAIIRIYA-PCKAEELARVVKPGGIVITVTPGPR 185 (272)
T ss_pred cccCCCcCCceeEEEEecC-CCCHHHHHhhccCCCEEEEEeCCCc
Confidence 8776667789999998654 4566899999999999999887664
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.6e-14 Score=110.89 Aligned_cols=101 Identities=29% Similarity=0.344 Sum_probs=76.7
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
++++.+|||||||.|.++..+++.. +++|+|+.+|+...+.+++.++..+ ..+++++...|..+.. .+||.
T Consensus 60 l~~G~~vLDiGcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~~g----l~~~v~v~~~D~~~~~---~~fD~ 130 (273)
T PF02353_consen 60 LKPGDRVLDIGCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIREAG----LEDRVEVRLQDYRDLP---GKFDR 130 (273)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCST----SSSTEEEEES-GGG------S-SE
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHhcC----CCCceEEEEeeccccC---CCCCE
Confidence 6899999999999999999999986 3699999999999999999998744 2357899999876543 38999
Q ss_pred EEECCCccc--------hhHHHHHhcCCCcEEEEEecC
Q psy10572 128 IHVSPSYFT--------IPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 128 v~~~~~~~~--------~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
|++...+.+ +++.+.++|+|||.+++....
T Consensus 131 IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~ 168 (273)
T PF02353_consen 131 IVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTIT 168 (273)
T ss_dssp EEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEE
T ss_pred EEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecc
Confidence 999877765 458999999999999985543
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.2e-13 Score=105.32 Aligned_cols=112 Identities=28% Similarity=0.420 Sum_probs=89.5
Q ss_pred HHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCC
Q psy10572 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKH 117 (204)
Q Consensus 38 ~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 117 (204)
..+.+.+. +.++.+|||+|||+|.++..++...++.++++++|+++.+++.++++... ...++.+...|...
T Consensus 9 ~~~~~~~~--~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~------~~~~~~~~~~d~~~ 80 (241)
T PRK08317 9 ARTFELLA--VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG------LGPNVEFVRGDADG 80 (241)
T ss_pred HHHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC------CCCceEEEeccccc
Confidence 34445454 67889999999999999999998875567999999999999999887332 13578899988776
Q ss_pred CCCCCCCeeEEEECCCccc------hhHHHHHhcCCCcEEEEEecC
Q psy10572 118 GYEREAPYDIIHVSPSYFT------IPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 118 ~~~~~~~~D~v~~~~~~~~------~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
...+.++||+|++...+.+ +++.+.++|+|||.+++..+.
T Consensus 81 ~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 81 LPFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred CCCCCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecC
Confidence 5555678999999876654 568999999999999987654
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.3e-14 Score=107.92 Aligned_cols=165 Identities=17% Similarity=0.133 Sum_probs=111.1
Q ss_pred CccccccccccCCcccCChHHHHHHHHHHhccC--CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHH
Q psy10572 16 EPYRIKSRQIGYGADISSPHIHAQMLELLKDKI--KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIK 93 (204)
Q Consensus 16 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~ 93 (204)
.++++-++.+. |..+.+.+....-++.+.+++ -.+++|||||||+|+.+-.++...+ ..|+|+|.++...-.+..
T Consensus 80 ~PWRKGPf~l~-gi~IDtEWrSd~KW~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA--~~ViGiDP~~lf~~QF~~ 156 (315)
T PF08003_consen 80 MPWRKGPFSLF-GIHIDTEWRSDWKWDRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGA--KSVIGIDPSPLFYLQFEA 156 (315)
T ss_pred CCcccCCcccC-CEeecccccccchHHHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCC--CEEEEECCChHHHHHHHH
Confidence 44555555543 667777777777777777765 4678999999999999999988753 379999999887655433
Q ss_pred HhhhcCccccCccceEEEEecCCCCCCCCCCeeEEEECCCccc------hhHHHHHhcCCCcEEEEEecCCCCcceEEEE
Q psy10572 94 NIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFT------IPQKLLDQLVPGGRMVMPVGEPFKGQNLTII 167 (204)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~------~~~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~ 167 (204)
.-.-.+ ....+.++......... .+.||+|++.+++.| .+.++...|++||.+++.+.--.+.......
T Consensus 157 i~~~lg----~~~~~~~lplgvE~Lp~-~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~ 231 (315)
T PF08003_consen 157 IKHFLG----QDPPVFELPLGVEDLPN-LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLV 231 (315)
T ss_pred HHHHhC----CCccEEEcCcchhhccc-cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEc
Confidence 222111 01223333223233323 578999999999877 4588999999999999988765555555555
Q ss_pred eecCCceEEEeeeeeeeeeeecccchh
Q psy10572 168 DKLADGYTIVTTVVRGVRTNPLYRDRF 194 (204)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~pl~~~~~ 194 (204)
....+ ..+.++.|+|-.....
T Consensus 232 P~~rY------a~m~nv~FiPs~~~L~ 252 (315)
T PF08003_consen 232 PEDRY------AKMRNVWFIPSVAALK 252 (315)
T ss_pred cCCcc------cCCCceEEeCCHHHHH
Confidence 55433 4555577888755444
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.5e-14 Score=104.38 Aligned_cols=126 Identities=29% Similarity=0.387 Sum_probs=104.2
Q ss_pred cCCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCc
Q psy10572 26 GYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQ 105 (204)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~ 105 (204)
..+..+-.|.-...++..+. +.|+.+|+|.|+|+|.++.++++..++.++++++|+.+...+.|++|++..+ ..
T Consensus 72 ~R~tQiIyPKD~~~I~~~~g--i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~----l~ 145 (256)
T COG2519 72 KRRTQIIYPKDAGYIVARLG--ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFG----LG 145 (256)
T ss_pred cCCCceecCCCHHHHHHHcC--CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhc----cc
Confidence 33444444555666777777 8999999999999999999999988888999999999999999999998854 12
Q ss_pred cceEEEEecCCCCCCCCCCeeEEEECCCccc-hhHHHHHhcCCCcEEEEEecCC
Q psy10572 106 GRVQFVVWNGKHGYEREAPYDIIHVSPSYFT-IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 106 ~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~-~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
+++++..+|..+...++ .||.|+.+-+-+| .++.+.+.|+|||.+++-++.-
T Consensus 146 d~v~~~~~Dv~~~~~~~-~vDav~LDmp~PW~~le~~~~~Lkpgg~~~~y~P~v 198 (256)
T COG2519 146 DRVTLKLGDVREGIDEE-DVDAVFLDLPDPWNVLEHVSDALKPGGVVVVYSPTV 198 (256)
T ss_pred cceEEEecccccccccc-ccCEEEEcCCChHHHHHHHHHHhCCCcEEEEEcCCH
Confidence 34889999988776654 8999999998887 7799999999999998855543
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.4e-13 Score=103.01 Aligned_cols=102 Identities=25% Similarity=0.347 Sum_probs=80.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
+.++.+|||+|||+|.++..+++.. ..+++++|+++.+++.+++++...+ .++.++.+|+... .+.++||+
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~~--~~~v~~vD~s~~~l~~a~~n~~~~~------~~~~~~~~d~~~~-~~~~~fD~ 104 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAAG--AGSVTAVDISRRAVRSARLNALLAG------VDVDVRRGDWARA-VEFRPFDV 104 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHcC--CCeEEEEECCHHHHHHHHHHHHHhC------CeeEEEECchhhh-ccCCCeeE
Confidence 5677899999999999999988752 2489999999999999999887633 2578888887653 34568999
Q ss_pred EEECCCccc---------------------------hhHHHHHhcCCCcEEEEEecCC
Q psy10572 128 IHVSPSYFT---------------------------IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 128 v~~~~~~~~---------------------------~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
|++++++.. +++++.++|++||++++.....
T Consensus 105 Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~ 162 (223)
T PRK14967 105 VVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSEL 162 (223)
T ss_pred EEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 999976432 3456789999999999876554
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.5e-14 Score=115.11 Aligned_cols=129 Identities=18% Similarity=0.230 Sum_probs=98.0
Q ss_pred CcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccc
Q psy10572 28 GADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGR 107 (204)
Q Consensus 28 ~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~ 107 (204)
|..+.+..........+. +.++.+|||+|||+|..+..++...++.++++++|+++.+++.++++++..+ ..+
T Consensus 217 G~~~~Qd~~s~~~~~~l~--~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g-----~~~ 289 (431)
T PRK14903 217 GLATVQGESSQIVPLLME--LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLK-----LSS 289 (431)
T ss_pred CeEEEECHHHHHHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcC-----CCe
Confidence 333334444444444444 6788999999999999999999987566799999999999999999998743 456
Q ss_pred eEEEEecCCCCC-CCCCCeeEEEECCCccc----------------------------hhHHHHHhcCCCcEEEEEecCC
Q psy10572 108 VQFVVWNGKHGY-EREAPYDIIHVSPSYFT----------------------------IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 108 ~~~~~~d~~~~~-~~~~~~D~v~~~~~~~~----------------------------~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
+.++.+|..... ...++||.|++++++.. ++..+.+.|||||+++.++++.
T Consensus 290 v~~~~~Da~~l~~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 290 IEIKIADAERLTEYVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred EEEEECchhhhhhhhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 889999876432 22467999999887721 2457789999999999999987
Q ss_pred CCcce
Q psy10572 159 FKGQN 163 (204)
Q Consensus 159 ~~~~~ 163 (204)
..++.
T Consensus 370 ~~eEn 374 (431)
T PRK14903 370 TKEEN 374 (431)
T ss_pred ChhhC
Confidence 75543
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.56 E-value=8.8e-14 Score=106.21 Aligned_cols=112 Identities=25% Similarity=0.351 Sum_probs=87.7
Q ss_pred HHHHHHHhccC-CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCC
Q psy10572 38 AQMLELLKDKI-KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGK 116 (204)
Q Consensus 38 ~~~~~~l~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~ 116 (204)
..+.+.+.... ..+.+|||+|||+|.++..+++.. +..+++++|+++.+++.++.+.. +++.++.+|+.
T Consensus 21 ~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~---------~~~~~~~~d~~ 90 (240)
T TIGR02072 21 KRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKTKLS---------ENVQFICGDAE 90 (240)
T ss_pred HHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHHhcC---------CCCeEEecchh
Confidence 33444444221 344699999999999999999987 66789999999999999987643 36788889987
Q ss_pred CCCCCCCCeeEEEECCCccc------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 117 HGYEREAPYDIIHVSPSYFT------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 117 ~~~~~~~~~D~v~~~~~~~~------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
....+.++||+|+++..+++ ++..+.++|+|||.+++..+...
T Consensus 91 ~~~~~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~~ 139 (240)
T TIGR02072 91 KLPLEDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFGPG 139 (240)
T ss_pred hCCCCCCceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence 66656678999999887654 55888999999999999876554
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >KOG2904|consensus | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.5e-13 Score=103.64 Aligned_cols=138 Identities=19% Similarity=0.216 Sum_probs=106.8
Q ss_pred CCccccccccccCCcccCChHHHHHHHHHHhccC----CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHH
Q psy10572 15 NEPYRIKSRQIGYGADISSPHIHAQMLELLKDKI----KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAES 90 (204)
Q Consensus 15 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~ 90 (204)
+.+|.|-.+.-..|.+++.++....+-..+.... ..+..|||+|||+|..+..+++.+ +.+.++++|.|+.+++.
T Consensus 109 ~~~F~~l~l~~~pgVlIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L-~~~~v~AiD~S~~Ai~L 187 (328)
T KOG2904|consen 109 SQPFGDLDLVCKPGVLIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGL-PQCTVTAIDVSKAAIKL 187 (328)
T ss_pred cCccCCceEEecCCeeecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcC-CCceEEEEeccHHHHHH
Confidence 6788888888888999988887765554444322 234589999999999999999999 68999999999999999
Q ss_pred HHHHhhhcCccccCccceEEEEecCCC----CC-CCCCCeeEEEECCCccc-----------------------------
Q psy10572 91 SIKNIDKGNSELLDQGRVQFVVWNGKH----GY-EREAPYDIIHVSPSYFT----------------------------- 136 (204)
Q Consensus 91 a~~~~~~~~~~~~~~~~~~~~~~d~~~----~~-~~~~~~D~v~~~~~~~~----------------------------- 136 (204)
|.+|+...+ ....+.+++-+... .. ...+++|++++|+++-.
T Consensus 188 a~eN~qr~~----l~g~i~v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~ 263 (328)
T KOG2904|consen 188 AKENAQRLK----LSGRIEVIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDN 263 (328)
T ss_pred HHHHHHHHh----hcCceEEEecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHH
Confidence 999998754 24567777554332 21 33478999999998721
Q ss_pred ---hhHHHHHhcCCCcEEEEEecC
Q psy10572 137 ---IPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 137 ---~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
+...+.+.|+|||.+.+.+..
T Consensus 264 ~~~~~~~a~R~Lq~gg~~~le~~~ 287 (328)
T KOG2904|consen 264 LVHYWLLATRMLQPGGFEQLELVE 287 (328)
T ss_pred HHHHHHhhHhhcccCCeEEEEecc
Confidence 225677999999999998873
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.9e-13 Score=106.75 Aligned_cols=137 Identities=24% Similarity=0.337 Sum_probs=98.0
Q ss_pred CccccccccccCCcccCChHHHHHHHHHHh-ccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHH
Q psy10572 16 EPYRIKSRQIGYGADISSPHIHAQMLELLK-DKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKN 94 (204)
Q Consensus 16 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~ 94 (204)
..|++..+..+.+..++.+.....+-..+. ....++.+|||+|||+|.++..++... +..+++++|+++.+++.++++
T Consensus 73 ~~f~~~~~~~~~~~lipr~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~-~~~~v~~iDis~~~l~~a~~n 151 (275)
T PRK09328 73 AEFWGLDFKVSPGVLIPRPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVARRN 151 (275)
T ss_pred ceEcCcEEEECCCceeCCCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHH
Confidence 345555555566666655443322222221 113567799999999999999999987 677999999999999999999
Q ss_pred hhhcCccccCccceEEEEecCCCCCCCCCCeeEEEECCCccc--------------------------------hhHHHH
Q psy10572 95 IDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFT--------------------------------IPQKLL 142 (204)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~--------------------------------~~~~~~ 142 (204)
+... ...++.++.+|+..... .++||+|++|+++.. +++.+.
T Consensus 152 ~~~~-----~~~~i~~~~~d~~~~~~-~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~ 225 (275)
T PRK09328 152 AKHG-----LGARVEFLQGDWFEPLP-GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAP 225 (275)
T ss_pred HHhC-----CCCcEEEEEccccCcCC-CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHH
Confidence 8721 23579999999765432 468999999977631 224556
Q ss_pred HhcCCCcEEEEEecCCC
Q psy10572 143 DQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 143 ~~Lk~gG~l~~~~~~~~ 159 (204)
++|+|||.+++.+....
T Consensus 226 ~~Lk~gG~l~~e~g~~~ 242 (275)
T PRK09328 226 RYLKPGGWLLLEIGYDQ 242 (275)
T ss_pred HhcccCCEEEEEECchH
Confidence 89999999999876544
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2e-13 Score=103.84 Aligned_cols=128 Identities=27% Similarity=0.330 Sum_probs=98.4
Q ss_pred cccCCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCcccc
Q psy10572 24 QIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELL 103 (204)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ 103 (204)
...+...+..+.-...++..+. +.||.+|||.|+|+|.++..+++..++.++++.+|..+...+.|+++++.++
T Consensus 16 ~l~rrtQIiYpkD~~~I~~~l~--i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~g---- 89 (247)
T PF08704_consen 16 SLPRRTQIIYPKDISYILMRLD--IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHG---- 89 (247)
T ss_dssp TS-SSS----HHHHHHHHHHTT----TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTT----
T ss_pred hccCCcceeeCchHHHHHHHcC--CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcC----
Confidence 3456666767777778888888 9999999999999999999999999899999999999999999999999865
Q ss_pred CccceEEEEecCCCCCCC---CCCeeEEEECCCccc-hhHHHHHhc-CCCcEEEEEecC
Q psy10572 104 DQGRVQFVVWNGKHGYER---EAPYDIIHVSPSYFT-IPQKLLDQL-VPGGRMVMPVGE 157 (204)
Q Consensus 104 ~~~~~~~~~~d~~~~~~~---~~~~D~v~~~~~~~~-~~~~~~~~L-k~gG~l~~~~~~ 157 (204)
...++++.+.|....-+. +..+|.|+.+-+.+| .+..+.+.| ++||++.+-.++
T Consensus 90 l~~~v~~~~~Dv~~~g~~~~~~~~~DavfLDlp~Pw~~i~~~~~~L~~~gG~i~~fsP~ 148 (247)
T PF08704_consen 90 LDDNVTVHHRDVCEEGFDEELESDFDAVFLDLPDPWEAIPHAKRALKKPGGRICCFSPC 148 (247)
T ss_dssp CCTTEEEEES-GGCG--STT-TTSEEEEEEESSSGGGGHHHHHHHE-EEEEEEEEEESS
T ss_pred CCCCceeEecceecccccccccCcccEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCC
Confidence 245899999998643332 367999999999988 679999999 899999775544
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.3e-13 Score=109.69 Aligned_cols=98 Identities=11% Similarity=0.048 Sum_probs=81.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEE
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDII 128 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 128 (204)
.++.+|||+|||+|..+..+++.. +..+++++|.++.+++.|+++... .+++++.+|......+.++||+|
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~-~~~~VtgVD~S~~mL~~A~~k~~~--------~~i~~i~gD~e~lp~~~~sFDvV 182 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPL--------KECKIIEGDAEDLPFPTDYADRY 182 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhhhc--------cCCeEEeccHHhCCCCCCceeEE
Confidence 567899999999999999998876 456999999999999999987532 46788999987666666789999
Q ss_pred EECCCccc------hhHHHHHhcCCCcEEEEEe
Q psy10572 129 HVSPSYFT------IPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 129 ~~~~~~~~------~~~~~~~~Lk~gG~l~~~~ 155 (204)
+++..+++ .++++.++|+|||.+++..
T Consensus 183 Is~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~ 215 (340)
T PLN02490 183 VSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIG 215 (340)
T ss_pred EEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 99876654 5588999999999998754
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.8e-13 Score=100.30 Aligned_cols=101 Identities=19% Similarity=0.239 Sum_probs=81.7
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
..++.+|||+|||+|.++..+++.. + +++++|+++.+++.+++++..+. .+++++.+|..... .++||+
T Consensus 17 ~~~~~~vLdlG~G~G~~~~~l~~~~-~--~v~~vD~s~~~~~~a~~~~~~~~------~~~~~~~~d~~~~~--~~~fD~ 85 (179)
T TIGR00537 17 ELKPDDVLEIGAGTGLVAIRLKGKG-K--CILTTDINPFAVKELRENAKLNN------VGLDVVMTDLFKGV--RGKFDV 85 (179)
T ss_pred hcCCCeEEEeCCChhHHHHHHHhcC-C--EEEEEECCHHHHHHHHHHHHHcC------CceEEEEccccccc--CCcccE
Confidence 3456789999999999999999875 3 89999999999999999987643 25788888876543 358999
Q ss_pred EEECCCcc---------------------------chhHHHHHhcCCCcEEEEEecCCC
Q psy10572 128 IHVSPSYF---------------------------TIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 128 v~~~~~~~---------------------------~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
|+++.++. .+++.+.++|+|||.+++......
T Consensus 86 Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~ 144 (179)
T TIGR00537 86 ILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN 144 (179)
T ss_pred EEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC
Confidence 99998763 135677799999999999876655
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.3e-14 Score=109.78 Aligned_cols=122 Identities=23% Similarity=0.361 Sum_probs=85.5
Q ss_pred cccccccCCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcC
Q psy10572 20 IKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGN 99 (204)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~ 99 (204)
|....+|-|.+.+. ..+++.+.....++.+|||+|||+|.+++..++... .+|+|+|+++.+++.|+.|+..|+
T Consensus 135 dPg~AFGTG~H~TT----~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA--~~v~a~DiDp~Av~~a~~N~~~N~ 208 (295)
T PF06325_consen 135 DPGMAFGTGHHPTT----RLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKLGA--KKVVAIDIDPLAVEAARENAELNG 208 (295)
T ss_dssp STTSSS-SSHCHHH----HHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTTB--SEEEEEESSCHHHHHHHHHHHHTT
T ss_pred CCCCcccCCCCHHH----HHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcCC--CeEEEecCCHHHHHHHHHHHHHcC
Confidence 33345555555433 345555555567889999999999999999999753 489999999999999999999876
Q ss_pred ccccCccceEEEEecCCCCCCCCCCeeEEEECCCccc---hhHHHHHhcCCCcEEEEEe
Q psy10572 100 SELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFT---IPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 100 ~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~---~~~~~~~~Lk~gG~l~~~~ 155 (204)
. ..++.+. . .. .....+||+|++|....- +...+.++|+|||+++++=
T Consensus 209 ~----~~~~~v~--~-~~-~~~~~~~dlvvANI~~~vL~~l~~~~~~~l~~~G~lIlSG 259 (295)
T PF06325_consen 209 V----EDRIEVS--L-SE-DLVEGKFDLVVANILADVLLELAPDIASLLKPGGYLILSG 259 (295)
T ss_dssp -----TTCEEES--C-TS-CTCCS-EEEEEEES-HHHHHHHHHHCHHHEEEEEEEEEEE
T ss_pred C----CeeEEEE--E-ec-ccccccCCEEEECCCHHHHHHHHHHHHHhhCCCCEEEEcc
Confidence 2 2345442 1 11 122378999999977654 4467788999999999954
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.7e-14 Score=95.82 Aligned_cols=90 Identities=30% Similarity=0.478 Sum_probs=69.7
Q ss_pred EEEEcCCCcHHHHHHHHHh--CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEEEC
Q psy10572 54 ILDIGSGSGYLTACLAYMA--GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVS 131 (204)
Q Consensus 54 vLdiG~G~G~~~~~l~~~~--~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 131 (204)
|||+|||+|..+..+.+.+ ++..+++++|+|+.+++.++++..... .+++++++|+.......++||+|++.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~------~~~~~~~~D~~~l~~~~~~~D~v~~~ 74 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDG------PKVRFVQADARDLPFSDGKFDLVVCS 74 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTT------TTSEEEESCTTCHHHHSSSEEEEEE-
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcC------CceEEEECCHhHCcccCCCeeEEEEc
Confidence 7999999999999999886 233699999999999999999986632 37899999987755556799999995
Q ss_pred CC-ccc--------hhHHHHHhcCCCc
Q psy10572 132 PS-YFT--------IPQKLLDQLVPGG 149 (204)
Q Consensus 132 ~~-~~~--------~~~~~~~~Lk~gG 149 (204)
.. +++ +++++.++|+|||
T Consensus 75 ~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 75 GLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 44 544 4578889999998
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.7e-13 Score=106.50 Aligned_cols=109 Identities=22% Similarity=0.261 Sum_probs=81.2
Q ss_pred HHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCC
Q psy10572 41 LELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE 120 (204)
Q Consensus 41 ~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 120 (204)
++.+.....++.+|||+|||+|.++..+++.. ..+++++|+++.+++.+++++..+.. ..++.+...+... .
T Consensus 150 l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~g--~~~V~avDid~~al~~a~~n~~~n~~----~~~~~~~~~~~~~--~ 221 (288)
T TIGR00406 150 LEWLEDLDLKDKNVIDVGCGSGILSIAALKLG--AAKVVGIDIDPLAVESARKNAELNQV----SDRLQVKLIYLEQ--P 221 (288)
T ss_pred HHHHHhhcCCCCEEEEeCCChhHHHHHHHHcC--CCeEEEEECCHHHHHHHHHHHHHcCC----CcceEEEeccccc--c
Confidence 33343334678999999999999998887753 34899999999999999999887541 2345566555222 2
Q ss_pred CCCCeeEEEECCCcc---chhHHHHHhcCCCcEEEEEecC
Q psy10572 121 REAPYDIIHVSPSYF---TIPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 121 ~~~~~D~v~~~~~~~---~~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
..++||+|+++.... .++..+.+.|+|||.++++...
T Consensus 222 ~~~~fDlVvan~~~~~l~~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 222 IEGKADVIVANILAEVIKELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred cCCCceEEEEecCHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 246899999987655 3557888999999999996543
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.5e-13 Score=113.72 Aligned_cols=126 Identities=17% Similarity=0.244 Sum_probs=96.4
Q ss_pred ccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceE
Q psy10572 30 DISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQ 109 (204)
Q Consensus 30 ~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~ 109 (204)
...+......+...+. +.++.+|||+|||+|..+..++...++.++++++|+++.+++.+++++...+ ..++.
T Consensus 234 ~~~qd~~s~l~~~~l~--~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g-----~~~v~ 306 (434)
T PRK14901 234 WTVQDRSAQLVAPLLD--PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLG-----LKSIK 306 (434)
T ss_pred EEEECHHHHHHHHHhC--CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcC-----CCeEE
Confidence 3333444444445554 5788999999999999999999887556799999999999999999998744 45789
Q ss_pred EEEecCCCCC----CCCCCeeEEEECCCcc----------------------------chhHHHHHhcCCCcEEEEEecC
Q psy10572 110 FVVWNGKHGY----EREAPYDIIHVSPSYF----------------------------TIPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 110 ~~~~d~~~~~----~~~~~~D~v~~~~~~~----------------------------~~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
++.+|..... ...++||.|++++++. .+++.+.+.|||||+++.++++
T Consensus 307 ~~~~D~~~~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcs 386 (434)
T PRK14901 307 ILAADSRNLLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCT 386 (434)
T ss_pred EEeCChhhcccccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 9999976543 2246799999987642 2356788999999999988877
Q ss_pred CCCcc
Q psy10572 158 PFKGQ 162 (204)
Q Consensus 158 ~~~~~ 162 (204)
....+
T Consensus 387 i~~~E 391 (434)
T PRK14901 387 LHPAE 391 (434)
T ss_pred CChhh
Confidence 75443
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.4e-13 Score=107.23 Aligned_cols=121 Identities=17% Similarity=0.140 Sum_probs=84.1
Q ss_pred cccCChHHHHHHHHHHhcc--CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCcc
Q psy10572 29 ADISSPHIHAQMLELLKDK--IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQG 106 (204)
Q Consensus 29 ~~~~~~~~~~~~~~~l~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~ 106 (204)
..+.........+..+.++ ..++.+|||+|||+|.++..++... . ..++|+|+|+.++..++....... ...
T Consensus 98 ~~~~~e~~s~~~~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g-~-~~v~GiDpS~~ml~q~~~~~~~~~----~~~ 171 (314)
T TIGR00452 98 IKIDSEWRSDIKWDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHG-A-KSLVGIDPTVLFLCQFEAVRKLLD----NDK 171 (314)
T ss_pred ccCCHHHHHHHHHHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcC-C-CEEEEEcCCHHHHHHHHHHHHHhc----cCC
Confidence 3333344444444444443 3567899999999999998888764 2 379999999999876543222100 124
Q ss_pred ceEEEEecCCCCCCCCCCeeEEEECCCccc------hhHHHHHhcCCCcEEEEEec
Q psy10572 107 RVQFVVWNGKHGYEREAPYDIIHVSPSYFT------IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 107 ~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~------~~~~~~~~Lk~gG~l~~~~~ 156 (204)
++.+...++.+... ..+||+|+++..+++ .++++.++|+|||.|++.+.
T Consensus 172 ~v~~~~~~ie~lp~-~~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl 226 (314)
T TIGR00452 172 RAILEPLGIEQLHE-LYAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETL 226 (314)
T ss_pred CeEEEECCHHHCCC-CCCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEE
Confidence 67777777654433 357999999988765 45899999999999999764
|
Known examples to date are restricted to the proteobacteria. |
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.6e-13 Score=102.59 Aligned_cols=101 Identities=18% Similarity=0.245 Sum_probs=80.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC---CCCCC
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY---EREAP 124 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~ 124 (204)
+.++.+|||+|||+|..+..+++..+ .+.|+++|+++.+++.+.++++. ..|+.++.+|..... .-..+
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~-------~~nv~~i~~D~~~~~~~~~l~~~ 141 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEE-------RKNIIPILADARKPERYAHVVEK 141 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhh-------cCCcEEEECCCCCcchhhhcccc
Confidence 67889999999999999999999873 66999999999999988776654 247888888875321 11246
Q ss_pred eeEEEECCCccc----hhHHHHHhcCCCcEEEEEec
Q psy10572 125 YDIIHVSPSYFT----IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 125 ~D~v~~~~~~~~----~~~~~~~~Lk~gG~l~~~~~ 156 (204)
||+|+++....+ +++.+.+.|||||.+++++.
T Consensus 142 ~D~i~~d~~~p~~~~~~L~~~~r~LKpGG~lvI~v~ 177 (226)
T PRK04266 142 VDVIYQDVAQPNQAEIAIDNAEFFLKDGGYLLLAIK 177 (226)
T ss_pred CCEEEECCCChhHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 999998765443 36788999999999999654
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.5e-13 Score=108.66 Aligned_cols=117 Identities=18% Similarity=0.231 Sum_probs=92.7
Q ss_pred ChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEE
Q psy10572 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVV 112 (204)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 112 (204)
.+.+...++.... ++++..|||+|||+|.++..++... ..++|+|+++.++..++.+++..+ ..++.+..
T Consensus 167 ~~~la~~~~~l~~--~~~g~~vLDp~cGtG~~lieaa~~~---~~v~g~Di~~~~~~~a~~nl~~~g-----~~~i~~~~ 236 (329)
T TIGR01177 167 DPKLARAMVNLAR--VTEGDRVLDPFCGTGGFLIEAGLMG---AKVIGCDIDWKMVAGARINLEHYG-----IEDFFVKR 236 (329)
T ss_pred CHHHHHHHHHHhC--CCCcCEEEECCCCCCHHHHHHHHhC---CeEEEEcCCHHHHHHHHHHHHHhC-----CCCCeEEe
Confidence 4555666665554 6788999999999999988876643 499999999999999999987744 34578899
Q ss_pred ecCCCCCCCCCCeeEEEECCCcc---------------chhHHHHHhcCCCcEEEEEecCCC
Q psy10572 113 WNGKHGYEREAPYDIIHVSPSYF---------------TIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 113 ~d~~~~~~~~~~~D~v~~~~~~~---------------~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
+|+.......++||+|++++++. .+++.+.+.|+|||++++.+++..
T Consensus 237 ~D~~~l~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~ 298 (329)
T TIGR01177 237 GDATKLPLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRI 298 (329)
T ss_pred cchhcCCcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCC
Confidence 99877655567899999997752 245678899999999999887764
|
This family is found exclusively in the Archaea. |
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.5e-13 Score=112.14 Aligned_cols=121 Identities=20% Similarity=0.252 Sum_probs=92.9
Q ss_pred CChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEE
Q psy10572 32 SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV 111 (204)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 111 (204)
.++.........+. +.++.+|||+|||+|..+..+++.. +.+.++++|+++.+++.+++++...+ . +++++
T Consensus 228 iQd~~s~~~~~~l~--~~~g~~VLDlgaG~G~~t~~la~~~-~~~~v~a~D~s~~~l~~~~~n~~~~g-----~-~~~~~ 298 (427)
T PRK10901 228 VQDAAAQLAATLLA--PQNGERVLDACAAPGGKTAHILELA-PQAQVVALDIDAQRLERVRENLQRLG-----L-KATVI 298 (427)
T ss_pred EECHHHHHHHHHcC--CCCCCEEEEeCCCCChHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHcC-----C-CeEEE
Confidence 34444444555554 6788999999999999999999987 44799999999999999999998743 2 36788
Q ss_pred EecCCCCC--CCCCCeeEEEECCCcc----------------------------chhHHHHHhcCCCcEEEEEecCCCCc
Q psy10572 112 VWNGKHGY--EREAPYDIIHVSPSYF----------------------------TIPQKLLDQLVPGGRMVMPVGEPFKG 161 (204)
Q Consensus 112 ~~d~~~~~--~~~~~~D~v~~~~~~~----------------------------~~~~~~~~~Lk~gG~l~~~~~~~~~~ 161 (204)
.+|..... ...++||.|++++++. .++..+.+.|||||++++++++-...
T Consensus 299 ~~D~~~~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~ 378 (427)
T PRK10901 299 VGDARDPAQWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPE 378 (427)
T ss_pred EcCcccchhhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChh
Confidence 88876432 2346799999988753 14567789999999999988765543
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.8e-13 Score=112.48 Aligned_cols=127 Identities=17% Similarity=0.160 Sum_probs=96.4
Q ss_pred CcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccc
Q psy10572 28 GADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGR 107 (204)
Q Consensus 28 ~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~ 107 (204)
|....+..........+. +.++.+|||+|||+|..+..+++..+..++++++|+++.+++.+++++...+ ..+
T Consensus 230 G~~~vqd~~s~l~~~~l~--~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g-----~~~ 302 (445)
T PRK14904 230 GLVSVQNPTQALACLLLN--PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALG-----ITI 302 (445)
T ss_pred cEEEEeCHHHHHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhC-----CCe
Confidence 333333334444444444 5678899999999999999998876455699999999999999999998743 357
Q ss_pred eEEEEecCCCCCCCCCCeeEEEECCCcc----------------------------chhHHHHHhcCCCcEEEEEecCCC
Q psy10572 108 VQFVVWNGKHGYEREAPYDIIHVSPSYF----------------------------TIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 108 ~~~~~~d~~~~~~~~~~~D~v~~~~~~~----------------------------~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
++++.+|..... +.++||.|++++++. .++..+.+.|+|||+++.++++-.
T Consensus 303 v~~~~~Da~~~~-~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 303 IETIEGDARSFS-PEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred EEEEeCcccccc-cCCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 899999976543 446899999986641 145677899999999999998876
Q ss_pred Ccc
Q psy10572 160 KGQ 162 (204)
Q Consensus 160 ~~~ 162 (204)
..+
T Consensus 382 ~~E 384 (445)
T PRK14904 382 PEE 384 (445)
T ss_pred hhh
Confidence 443
|
|
| >KOG1270|consensus | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.5e-14 Score=107.28 Aligned_cols=100 Identities=22% Similarity=0.336 Sum_probs=78.9
Q ss_pred CCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCcc----ceEEEEecCCCCCCCCCCee
Q psy10572 51 GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQG----RVQFVVWNGKHGYEREAPYD 126 (204)
Q Consensus 51 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~d~~~~~~~~~~~D 126 (204)
+.+|||+|||.|.++..|++... +|+|+|+++.+++.|++....++ .... ++.+.+.+..... +.||
T Consensus 90 g~~ilDvGCGgGLLSepLArlga---~V~GID~s~~~V~vA~~h~~~dP---~~~~~~~y~l~~~~~~~E~~~---~~fD 160 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGA---QVTGIDASDDMVEVANEHKKMDP---VLEGAIAYRLEYEDTDVEGLT---GKFD 160 (282)
T ss_pred CceEEEeccCccccchhhHhhCC---eeEeecccHHHHHHHHHhhhcCc---hhccccceeeehhhcchhhcc---cccc
Confidence 47899999999999999999763 99999999999999999955533 1122 2555555544332 4599
Q ss_pred EEEECCCccch------hHHHHHhcCCCcEEEEEecCCC
Q psy10572 127 IIHVSPSYFTI------PQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 127 ~v~~~~~~~~~------~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
.|++...++|+ ++.+.+.|||||++++++-+..
T Consensus 161 aVvcsevleHV~dp~~~l~~l~~~lkP~G~lfittinrt 199 (282)
T KOG1270|consen 161 AVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINRT 199 (282)
T ss_pred eeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhh
Confidence 99999888875 4788899999999999887665
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.5e-13 Score=104.67 Aligned_cols=112 Identities=21% Similarity=0.345 Sum_probs=88.7
Q ss_pred HHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCC
Q psy10572 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKH 117 (204)
Q Consensus 38 ~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 117 (204)
..++..+.. ..++.+|||+|||+|+.+.+++...++.++++++|+++.+++.|+++++..+ ...+++++.+|+.+
T Consensus 57 g~~L~~l~~-~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~g----l~~~i~~~~gda~~ 131 (234)
T PLN02781 57 GLFLSMLVK-IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAG----VDHKINFIQSDALS 131 (234)
T ss_pred HHHHHHHHH-HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC----CCCcEEEEEccHHH
Confidence 444444442 4567899999999999999999887567899999999999999999998855 13579999999765
Q ss_pred CCC------CCCCeeEEEECCC---ccchhHHHHHhcCCCcEEEEE
Q psy10572 118 GYE------REAPYDIIHVSPS---YFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 118 ~~~------~~~~~D~v~~~~~---~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
... +.++||+|+++.. +..+.+.+.+.|+|||.+++.
T Consensus 132 ~L~~l~~~~~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 132 ALDQLLNNDPKPEFDFAFVDADKPNYVHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred HHHHHHhCCCCCCCCEEEECCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 321 1368999999964 445678899999999998873
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1e-12 Score=96.82 Aligned_cols=113 Identities=23% Similarity=0.316 Sum_probs=86.1
Q ss_pred HHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCC
Q psy10572 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKH 117 (204)
Q Consensus 38 ~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 117 (204)
..+.+.+. ..++.+|||+|||+|.++..+++.. .+++++|+++.+++.+++++..+.. ...++.++..|...
T Consensus 13 ~~l~~~~~--~~~~~~vLd~G~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~~~~~~---~~~~~~~~~~d~~~ 84 (188)
T PRK14968 13 FLLAENAV--DKKGDRVLEVGTGSGIVAIVAAKNG---KKVVGVDINPYAVECAKCNAKLNNI---RNNGVEVIRSDLFE 84 (188)
T ss_pred HHHHHhhh--ccCCCEEEEEccccCHHHHHHHhhc---ceEEEEECCHHHHHHHHHHHHHcCC---CCcceEEEeccccc
Confidence 34445454 4677899999999999999998873 5999999999999999998876431 11128888888766
Q ss_pred CCCCCCCeeEEEECCCccc---------------------------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 118 GYEREAPYDIIHVSPSYFT---------------------------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 118 ~~~~~~~~D~v~~~~~~~~---------------------------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
... ..+||+|+++.++.. +++++.++|+|||.+++.+++..
T Consensus 85 ~~~-~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~ 152 (188)
T PRK14968 85 PFR-GDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLT 152 (188)
T ss_pred ccc-ccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccC
Confidence 543 348999999876532 45788899999999988776543
|
|
| >KOG1540|consensus | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.5e-13 Score=99.67 Aligned_cols=109 Identities=15% Similarity=0.184 Sum_probs=89.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCC-----ceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCC
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPE-----GRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREA 123 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~-----~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 123 (204)
.++.++||++||+|..+..+.+..... .+|++.|+++.++..++++....+.. ..+.+.++.+|+.+.+++..
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~--~~~~~~w~~~dAE~LpFdd~ 176 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLK--ASSRVEWVEGDAEDLPFDDD 176 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCC--cCCceEEEeCCcccCCCCCC
Confidence 556899999999999999999987432 79999999999999999998653210 12359999999999999999
Q ss_pred CeeEEEECCCccc------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 124 PYDIIHVSPSYFT------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 124 ~~D~v~~~~~~~~------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
+||...+..+... .+++++++|||||++.+-..+..
T Consensus 177 s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv 218 (296)
T KOG1540|consen 177 SFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKV 218 (296)
T ss_pred cceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEcccc
Confidence 9999988776644 56899999999999987555443
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.5e-12 Score=95.29 Aligned_cols=153 Identities=18% Similarity=0.151 Sum_probs=104.7
Q ss_pred ccccccccc--cCCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHH
Q psy10572 17 PYRIKSRQI--GYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKN 94 (204)
Q Consensus 17 ~y~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~ 94 (204)
.|+...+.. +.+...+...+...+...+.. ..++.+|||+|||+|.++..++... ..+++++|.++.+++.++++
T Consensus 19 ~~~g~~l~~~~~~~~Rp~~d~v~e~l~~~l~~-~~~~~~vLDl~~GsG~l~l~~lsr~--a~~V~~vE~~~~a~~~a~~N 95 (199)
T PRK10909 19 QWRGRKLPVPDSPGLRPTTDRVRETLFNWLAP-VIVDARCLDCFAGSGALGLEALSRY--AAGATLLEMDRAVAQQLIKN 95 (199)
T ss_pred ccCCCEeCCCCCCCcCcCCHHHHHHHHHHHhh-hcCCCEEEEcCCCccHHHHHHHHcC--CCEEEEEECCHHHHHHHHHH
Confidence 355555544 334555566666667666652 2456799999999999998765543 24999999999999999999
Q ss_pred hhhcCccccCccceEEEEecCCCCCC-CCCCeeEEEECCCccc-hh----HHHHH--hcCCCcEEEEEecCCCCc----c
Q psy10572 95 IDKGNSELLDQGRVQFVVWNGKHGYE-REAPYDIIHVSPSYFT-IP----QKLLD--QLVPGGRMVMPVGEPFKG----Q 162 (204)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~v~~~~~~~~-~~----~~~~~--~Lk~gG~l~~~~~~~~~~----~ 162 (204)
++.++ ..+++++.+|+..... ...+||+|++++++.. +. +.+.. +|+|++++++.+...... .
T Consensus 96 l~~~~-----~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~~~~~~~~~~ 170 (199)
T PRK10909 96 LATLK-----AGNARVVNTNALSFLAQPGTPHNVVFVDPPFRKGLLEETINLLEDNGWLADEALIYVESEVENGLPTVPA 170 (199)
T ss_pred HHHhC-----CCcEEEEEchHHHHHhhcCCCceEEEECCCCCCChHHHHHHHHHHCCCcCCCcEEEEEecCCCCcccCCC
Confidence 88754 3478999999764332 2346999999999643 33 33333 368999999998765321 2
Q ss_pred eEEEEeecCCceEEE
Q psy10572 163 NLTIIDKLADGYTIV 177 (204)
Q Consensus 163 ~~~~~~~~~~~~~~~ 177 (204)
.+..+....++...+
T Consensus 171 ~~~~~~~k~yG~s~~ 185 (199)
T PRK10909 171 NWQLHREKVAGQVAY 185 (199)
T ss_pred ccEEEEEecCCCEEE
Confidence 245556666666544
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.3e-13 Score=108.48 Aligned_cols=105 Identities=19% Similarity=0.207 Sum_probs=88.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC--CCCCCCee
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG--YEREAPYD 126 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D 126 (204)
..+..+||||||+|.++..+++.. |+..++|+|+++.+++.+.+++...+ ..|+.++.+|+... ..+.+++|
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~g-----L~NV~~i~~DA~~ll~~~~~~s~D 194 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIELLN-----LKNLLIINYDARLLLELLPSNSVE 194 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcC-----CCcEEEEECCHHHhhhhCCCCcee
Confidence 456699999999999999999998 78899999999999999999887643 56899999997532 35668999
Q ss_pred EEEECCCccc------------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 127 IIHVSPSYFT------------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 127 ~v~~~~~~~~------------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
.|+++.+.+| +++.+.++|+|||.+.+.+....
T Consensus 195 ~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~ 239 (390)
T PRK14121 195 KIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSEL 239 (390)
T ss_pred EEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHH
Confidence 9999987753 56889999999999999765443
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.4e-13 Score=104.71 Aligned_cols=104 Identities=15% Similarity=0.148 Sum_probs=79.8
Q ss_pred CCCCEEEEEcCCCcHHH-HHHHHHhCCCceEEEEEcCHHHHHHHHHHhhh-cCccccCccceEEEEecCCCCCCCCCCee
Q psy10572 49 KPGARILDIGSGSGYLT-ACLAYMAGPEGRVYGVEHVMELAESSIKNIDK-GNSELLDQGRVQFVVWNGKHGYEREAPYD 126 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~-~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~D 126 (204)
.++.+|+|||||+|.++ +.++....++++++++|.++.+++.|++.+.. .+ ..++++|..+|+.+.....+.||
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~g----L~~rV~F~~~Da~~~~~~l~~FD 197 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPD----LSKRMFFHTADVMDVTESLKEYD 197 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccC----ccCCcEEEECchhhcccccCCcC
Confidence 47789999999987554 44443333788999999999999999999854 22 23579999999877543346899
Q ss_pred EEEECCCcc-------chhHHHHHhcCCCcEEEEEec
Q psy10572 127 IIHVSPSYF-------TIPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 127 ~v~~~~~~~-------~~~~~~~~~Lk~gG~l~~~~~ 156 (204)
+|++..... .+++.+.+.|+|||.+++-..
T Consensus 198 lVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~ 234 (296)
T PLN03075 198 VVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRSA 234 (296)
T ss_pred EEEEecccccccccHHHHHHHHHHhcCCCcEEEEecc
Confidence 999994221 256899999999999999763
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.7e-13 Score=110.54 Aligned_cols=126 Identities=15% Similarity=0.152 Sum_probs=93.6
Q ss_pred CcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCcc-
Q psy10572 28 GADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQG- 106 (204)
Q Consensus 28 ~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~- 106 (204)
|....++.....+...+. +.++.+|||+|||+|..+..+++.. +.++++++|+++.+++.++++++..+ ..
T Consensus 218 G~~~~Qd~~s~~~~~~L~--~~~g~~VLDlcag~G~kt~~la~~~-~~~~v~a~D~~~~~l~~~~~n~~r~g-----~~~ 289 (426)
T TIGR00563 218 GWVTVQDASAQWVATWLA--PQNEETILDACAAPGGKTTHILELA-PQAQVVALDIHEHRLKRVYENLKRLG-----LTI 289 (426)
T ss_pred CeEEEECHHHHHHHHHhC--CCCCCeEEEeCCCccHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHHcC-----CCe
Confidence 334444445555666665 6788999999999999999999987 46799999999999999999998744 22
Q ss_pred ceEEEEecCCCCCC--CCCCeeEEEECCCccc----------------------------hhHHHHHhcCCCcEEEEEec
Q psy10572 107 RVQFVVWNGKHGYE--REAPYDIIHVSPSYFT----------------------------IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 107 ~~~~~~~d~~~~~~--~~~~~D~v~~~~~~~~----------------------------~~~~~~~~Lk~gG~l~~~~~ 156 (204)
.+.+..+|...... +.++||.|++++++.. ++..+.+.|||||+++.+++
T Consensus 290 ~v~~~~~d~~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystc 369 (426)
T TIGR00563 290 KAETKDGDGRGPSQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATC 369 (426)
T ss_pred EEEEeccccccccccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 33446666543222 4568999998865421 44677899999999999988
Q ss_pred CCCCc
Q psy10572 157 EPFKG 161 (204)
Q Consensus 157 ~~~~~ 161 (204)
+-...
T Consensus 370 s~~~~ 374 (426)
T TIGR00563 370 SVLPE 374 (426)
T ss_pred CCChh
Confidence 87543
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.1e-13 Score=103.41 Aligned_cols=99 Identities=23% Similarity=0.241 Sum_probs=80.8
Q ss_pred CEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEEEC
Q psy10572 52 ARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVS 131 (204)
Q Consensus 52 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 131 (204)
++|||+|||+|..+..+++.. +.++++|+|+|+.+++.+++++...+ ...+++++..|......+ ++||+|++.
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~-~~~~v~gid~s~~~~~~a~~~~~~~g----l~~~i~~~~~d~~~~~~~-~~fD~I~~~ 74 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERH-PHLQLHGYTISPEQAEVGRERIRALG----LQGRIRIFYRDSAKDPFP-DTYDLVFGF 74 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcC----CCcceEEEecccccCCCC-CCCCEeehH
Confidence 379999999999999999887 56799999999999999999886633 134789999987654333 589999987
Q ss_pred CCccc------hhHHHHHhcCCCcEEEEEec
Q psy10572 132 PSYFT------IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 132 ~~~~~------~~~~~~~~Lk~gG~l~~~~~ 156 (204)
..+++ +++.+.++|+|||.+++...
T Consensus 75 ~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 75 EVIHHIKDKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred HHHHhCCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 65543 56899999999999998765
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.4e-13 Score=111.34 Aligned_cols=125 Identities=17% Similarity=0.142 Sum_probs=94.7
Q ss_pred CcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccc
Q psy10572 28 GADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGR 107 (204)
Q Consensus 28 ~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~ 107 (204)
|..+.++.....+...+. +.++.+|||+|||+|..+..+++..++.++++++|+++.+++.+++++...+ ..+
T Consensus 230 G~~~~qd~~s~lv~~~l~--~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g-----~~~ 302 (444)
T PRK14902 230 GLITIQDESSMLVAPALD--PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLG-----LTN 302 (444)
T ss_pred ceEEEEChHHHHHHHHhC--CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC-----CCe
Confidence 333334444444444554 5778899999999999999999987556799999999999999999988744 356
Q ss_pred eEEEEecCCCCCCC-CCCeeEEEECCCcc----------------------------chhHHHHHhcCCCcEEEEEecCC
Q psy10572 108 VQFVVWNGKHGYER-EAPYDIIHVSPSYF----------------------------TIPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 108 ~~~~~~d~~~~~~~-~~~~D~v~~~~~~~----------------------------~~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
+.++.+|+...... .++||+|++++++. .+++.+.+.|||||.++.++++.
T Consensus 303 v~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 303 IETKALDARKVHEKFAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred EEEEeCCcccccchhcccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 89999997654211 26799999987742 13567789999999999877765
Q ss_pred C
Q psy10572 159 F 159 (204)
Q Consensus 159 ~ 159 (204)
.
T Consensus 383 ~ 383 (444)
T PRK14902 383 E 383 (444)
T ss_pred C
Confidence 4
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.1e-13 Score=113.38 Aligned_cols=101 Identities=20% Similarity=0.306 Sum_probs=81.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC--CCCCCee
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY--EREAPYD 126 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D 126 (204)
.++.+|||+|||+|..+..+++.. +.++++|+|+|+.+++.|+++..... .++.++.+|..... ++.++||
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~g------~~ie~I~gDa~dLp~~fedeSFD 489 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEG------RSWNVIKGDAINLSSSFEKESVD 489 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcC------CCeEEEEcchHhCccccCCCCEE
Confidence 467899999999999999888877 67899999999999999998765422 36788888876543 4567899
Q ss_pred EEEECCCccc-------------------hhHHHHHhcCCCcEEEEEec
Q psy10572 127 IIHVSPSYFT-------------------IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 127 ~v~~~~~~~~-------------------~~~~~~~~Lk~gG~l~~~~~ 156 (204)
+|+++..+++ +++++.++|||||.+++...
T Consensus 490 vVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 490 TIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred EEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 9998865543 34688899999999999753
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.1e-13 Score=104.94 Aligned_cols=96 Identities=20% Similarity=0.264 Sum_probs=77.0
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEE
Q psy10572 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIH 129 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 129 (204)
++.+|||+|||+|..+..+++.. .+|+|+|+|+.+++.++++..... . ++++...|+..... .++||+|+
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g---~~V~avD~s~~ai~~~~~~~~~~~-----l-~v~~~~~D~~~~~~-~~~fD~I~ 189 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLG---FDVTAVDINQQSLENLQEIAEKEN-----L-NIRTGLYDINSASI-QEEYDFIL 189 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHHcC-----C-ceEEEEechhcccc-cCCccEEE
Confidence 44599999999999999998853 499999999999999998887643 2 67888888655433 46899999
Q ss_pred ECCCccc--------hhHHHHHhcCCCcEEEEEe
Q psy10572 130 VSPSYFT--------IPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 130 ~~~~~~~--------~~~~~~~~Lk~gG~l~~~~ 155 (204)
+...+++ +++.+.++|+|||++++..
T Consensus 190 ~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 190 STVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred EcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 9876543 4578889999999977654
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.4e-12 Score=99.53 Aligned_cols=114 Identities=22% Similarity=0.383 Sum_probs=88.2
Q ss_pred HHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCC
Q psy10572 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKH 117 (204)
Q Consensus 38 ~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 117 (204)
..++..+. ..++.+|||+|||+|..+..++...+...+++++|+++.+++.+++++.... ...++.++.+|+..
T Consensus 41 ~~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~----~~~~~~~~~~d~~~ 114 (239)
T PRK00216 41 RKTIKWLG--VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLG----LSGNVEFVQGDAEA 114 (239)
T ss_pred HHHHHHhC--CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccc----cccCeEEEeccccc
Confidence 34444444 4567899999999999999999887335799999999999999999875422 12468899999876
Q ss_pred CCCCCCCeeEEEECCCccc------hhHHHHHhcCCCcEEEEEecC
Q psy10572 118 GYEREAPYDIIHVSPSYFT------IPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 118 ~~~~~~~~D~v~~~~~~~~------~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
...+.++||+|++...+++ +++.+.+.|+|||.+++....
T Consensus 115 ~~~~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~ 160 (239)
T PRK00216 115 LPFPDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFS 160 (239)
T ss_pred CCCCCCCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEec
Confidence 5555678999998766543 557889999999999886543
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-14 Score=96.41 Aligned_cols=91 Identities=21% Similarity=0.368 Sum_probs=58.8
Q ss_pred EEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC--CCCCCeeEEEECC
Q psy10572 55 LDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY--EREAPYDIIHVSP 132 (204)
Q Consensus 55 LdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~v~~~~ 132 (204)
||+|||+|.++..+.... +..+++++|+|+.+++.+++++.... ..+......+..+.. ...++||+|++..
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~ 74 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELG-----NDNFERLRFDVLDLFDYDPPESFDLVVASN 74 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT--------EEEEE--SSS---CCC----SEEEEE-
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcC-----CcceeEEEeecCChhhcccccccceehhhh
Confidence 799999999999999997 77899999999999998888887633 223333333322221 1225899999998
Q ss_pred Cccch------hHHHHHhcCCCcEE
Q psy10572 133 SYFTI------PQKLLDQLVPGGRM 151 (204)
Q Consensus 133 ~~~~~------~~~~~~~Lk~gG~l 151 (204)
.++++ ++.+.++|+|||+|
T Consensus 75 vl~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 75 VLHHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred hHhhhhhHHHHHHHHHHHcCCCCCC
Confidence 88874 47888999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.2e-13 Score=111.34 Aligned_cols=157 Identities=19% Similarity=0.179 Sum_probs=108.3
Q ss_pred ccccCCccc-CChHHHHHHHHHHhcc--CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcC
Q psy10572 23 RQIGYGADI-SSPHIHAQMLELLKDK--IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGN 99 (204)
Q Consensus 23 ~~~~~~~~~-~~~~~~~~~~~~l~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~ 99 (204)
+.++.+.+. .++.....+.+.+... +.++.+|||+|||+|.++..+++.. .+++|+|+|+.+++.|++++..++
T Consensus 267 f~~~~~~F~q~n~~~~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~ 343 (443)
T PRK13168 267 LAFSPRDFIQVNAQVNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNG 343 (443)
T ss_pred EEECCCCeEEcCHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcC
Confidence 333444443 3444444444444332 3577899999999999999999875 389999999999999999987744
Q ss_pred ccccCccceEEEEecCCCCC----CCCCCeeEEEECCCccchhH--HHHHhcCCCcEEEEEecCCCCcceEEEEeecCCc
Q psy10572 100 SELLDQGRVQFVVWNGKHGY----EREAPYDIIHVSPSYFTIPQ--KLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADG 173 (204)
Q Consensus 100 ~~~~~~~~~~~~~~d~~~~~----~~~~~~D~v~~~~~~~~~~~--~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~ 173 (204)
..+++++.+|+.+.. ...++||+|+++++.....+ .....++|+++++++|.+... .+.+......
T Consensus 344 -----~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dPPr~g~~~~~~~l~~~~~~~ivyvSCnp~tl---aRDl~~L~~~ 415 (443)
T PRK13168 344 -----LDNVTFYHANLEEDFTDQPWALGGFDKVLLDPPRAGAAEVMQALAKLGPKRIVYVSCNPATL---ARDAGVLVEA 415 (443)
T ss_pred -----CCceEEEEeChHHhhhhhhhhcCCCCEEEECcCCcChHHHHHHHHhcCCCeEEEEEeChHHh---hccHHHHhhC
Confidence 357999999976432 22357999999998764332 222336899999999866542 2333333334
Q ss_pred eEEEeeeeeeeeeeeccc
Q psy10572 174 YTIVTTVVRGVRTNPLYR 191 (204)
Q Consensus 174 ~~~~~~~~~~~~~~pl~~ 191 (204)
.+++ .++.++.+.|.+.
T Consensus 416 gY~l-~~i~~~DmFP~T~ 432 (443)
T PRK13168 416 GYRL-KRAGMLDMFPHTG 432 (443)
T ss_pred CcEE-EEEEEeccCCCCC
Confidence 4677 7778888888764
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.1e-13 Score=101.81 Aligned_cols=104 Identities=25% Similarity=0.336 Sum_probs=77.1
Q ss_pred HHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC
Q psy10572 39 QMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG 118 (204)
Q Consensus 39 ~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~ 118 (204)
.+++.+.....++.+|||+|||+|.++..+++.. . .+++|+|+|+.+++.|++++..+.. ...+.+..++
T Consensus 108 ~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~g-~-~~v~giDis~~~l~~A~~n~~~~~~----~~~~~~~~~~---- 177 (250)
T PRK00517 108 LCLEALEKLVLPGKTVLDVGCGSGILAIAAAKLG-A-KKVLAVDIDPQAVEAARENAELNGV----ELNVYLPQGD---- 177 (250)
T ss_pred HHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHcC-C-CeEEEEECCHHHHHHHHHHHHHcCC----CceEEEccCC----
Confidence 3444554445688999999999999998877754 2 3699999999999999999877441 1233333332
Q ss_pred CCCCCCeeEEEECCCcc---chhHHHHHhcCCCcEEEEEec
Q psy10572 119 YEREAPYDIIHVSPSYF---TIPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 119 ~~~~~~~D~v~~~~~~~---~~~~~~~~~Lk~gG~l~~~~~ 156 (204)
.+||+|+++.... .++..+.++|+|||+++++-.
T Consensus 178 ----~~fD~Vvani~~~~~~~l~~~~~~~LkpgG~lilsgi 214 (250)
T PRK00517 178 ----LKADVIVANILANPLLELAPDLARLLKPGGRLILSGI 214 (250)
T ss_pred ----CCcCEEEEcCcHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 2699999987544 355788899999999999754
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.9e-12 Score=96.64 Aligned_cols=95 Identities=17% Similarity=0.190 Sum_probs=72.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
+.++.+|||+|||+|..+..+++.. +..+++|+|+|+.+++.|+++. +++.+..+|+.. ..+.++||+
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~-~~~~v~giDiS~~~l~~A~~~~----------~~~~~~~~d~~~-~~~~~sfD~ 108 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLL-PFKHIYGVEINEYAVEKAKAYL----------PNINIIQGSLFD-PFKDNFFDL 108 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHhhC----------CCCcEEEeeccC-CCCCCCEEE
Confidence 5677899999999999999998876 5579999999999999998753 246778888776 556689999
Q ss_pred EEECCCccchh--------HHHHHhcCCCcEEEEEec
Q psy10572 128 IHVSPSYFTIP--------QKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 128 v~~~~~~~~~~--------~~~~~~Lk~gG~l~~~~~ 156 (204)
|+++..+.++. +++.+++ ++.+++...
T Consensus 109 V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~ 143 (204)
T TIGR03587 109 VLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEY 143 (204)
T ss_pred EEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEe
Confidence 99998876542 4445554 345555443
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.1e-13 Score=105.78 Aligned_cols=146 Identities=17% Similarity=0.158 Sum_probs=104.6
Q ss_pred CChHHHHHHHHHHhccC--CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceE
Q psy10572 32 SSPHIHAQMLELLKDKI--KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQ 109 (204)
Q Consensus 32 ~~~~~~~~~~~~l~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~ 109 (204)
.++.+...+.+.+...+ .++.+|||+|||+|.++..+++.. .+++|+|.++.+++.|+++++.++ ..+++
T Consensus 153 ~n~~~~~~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~---~~V~gvD~s~~av~~A~~n~~~~~-----l~~v~ 224 (315)
T PRK03522 153 TNPAVAAQLYATARDWVRELPPRSMWDLFCGVGGFGLHCATPG---MQLTGIEISAEAIACAKQSAAELG-----LTNVQ 224 (315)
T ss_pred cCHHHHHHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHHcC-----CCceE
Confidence 34445555554433322 356899999999999999999854 499999999999999999998754 35799
Q ss_pred EEEecCCCCCC-CCCCeeEEEECCCccchhH---HHHHhcCCCcEEEEEecCCCCcceEEEEeecCCceEEEeeeeeeee
Q psy10572 110 FVVWNGKHGYE-REAPYDIIHVSPSYFTIPQ---KLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYTIVTTVVRGVR 185 (204)
Q Consensus 110 ~~~~d~~~~~~-~~~~~D~v~~~~~~~~~~~---~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (204)
++.+|+.+... ..+.||+|+++++...+.. .+...++|+++++++|.+......+..+ ..+.+ ..+.+..
T Consensus 225 ~~~~D~~~~~~~~~~~~D~Vv~dPPr~G~~~~~~~~l~~~~~~~ivyvsc~p~t~~rd~~~l-----~~y~~-~~~~~~D 298 (315)
T PRK03522 225 FQALDSTQFATAQGEVPDLVLVNPPRRGIGKELCDYLSQMAPRFILYSSCNAQTMAKDLAHL-----PGYRI-ERVQLFD 298 (315)
T ss_pred EEEcCHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHcCCCeEEEEECCcccchhHHhhc-----cCcEE-EEEEEec
Confidence 99999764322 2346999999988765433 3445568889999988777655444444 24666 6777777
Q ss_pred eeeccc
Q psy10572 186 TNPLYR 191 (204)
Q Consensus 186 ~~pl~~ 191 (204)
..|.+.
T Consensus 299 mFP~T~ 304 (315)
T PRK03522 299 MFPHTA 304 (315)
T ss_pred cCCCCC
Confidence 777764
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=8.2e-13 Score=107.37 Aligned_cols=98 Identities=22% Similarity=0.214 Sum_probs=79.3
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
+.++.+|||+|||+|.++..+++.. +++|+|+|+|+.+++.|++++.. .++++...|.... .++||.
T Consensus 165 l~~g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~~--------l~v~~~~~D~~~l---~~~fD~ 231 (383)
T PRK11705 165 LKPGMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCAG--------LPVEIRLQDYRDL---NGQFDR 231 (383)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhcc--------CeEEEEECchhhc---CCCCCE
Confidence 5788999999999999999998875 35999999999999999988742 2477777776543 367999
Q ss_pred EEECCCccc--------hhHHHHHhcCCCcEEEEEecCC
Q psy10572 128 IHVSPSYFT--------IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 128 v~~~~~~~~--------~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
|++...+++ +++.+.++|||||.+++.....
T Consensus 232 Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~ 270 (383)
T PRK11705 232 IVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGS 270 (383)
T ss_pred EEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccC
Confidence 998766543 4578889999999999976543
|
|
| >KOG1271|consensus | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.8e-13 Score=94.70 Aligned_cols=136 Identities=18% Similarity=0.213 Sum_probs=97.7
Q ss_pred cccCChHHHHHHHHHHhccCC------CCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccc
Q psy10572 29 ADISSPHIHAQMLELLKDKIK------PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSEL 102 (204)
Q Consensus 29 ~~~~~~~~~~~~~~~l~~~~~------~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~ 102 (204)
..+........+++++..+.. ...+|||+|||+|.+...|++.. -+...+|+|+|+.+++.|+..++..+
T Consensus 40 EvWFg~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~eg-f~~~L~GvDYs~~AV~LA~niAe~~~--- 115 (227)
T KOG1271|consen 40 EVWFGEDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEG-FQSKLTGVDYSEKAVELAQNIAERDG--- 115 (227)
T ss_pred ceecCCcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhc-CCCCccccccCHHHHHHHHHHHHhcC---
Confidence 344455666677777664432 33499999999999999998876 44579999999999999988877754
Q ss_pred cCccceEEEEecCCCCCCCCCCeeEEEECCCcc--------------chhHHHHHhcCCCcEEEEEecCCCCcceEEEEe
Q psy10572 103 LDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYF--------------TIPQKLLDQLVPGGRMVMPVGEPFKGQNLTIID 168 (204)
Q Consensus 103 ~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~--------------~~~~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~ 168 (204)
..+.|+|.+.|+.+.....+.||+|.--..+. -......+.|+|||+++++-++....+......
T Consensus 116 -~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~f~ 194 (227)
T KOG1271|consen 116 -FSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVEEFE 194 (227)
T ss_pred -CCcceeEEEeeccCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHHHHHHHh
Confidence 12349999999887555556788775432221 144778899999999999888877554444433
Q ss_pred e
Q psy10572 169 K 169 (204)
Q Consensus 169 ~ 169 (204)
.
T Consensus 195 ~ 195 (227)
T KOG1271|consen 195 N 195 (227)
T ss_pred c
Confidence 3
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.8e-13 Score=102.51 Aligned_cols=132 Identities=16% Similarity=0.159 Sum_probs=88.6
Q ss_pred ccCCcccCChHHHHHHHHHHhcc------CCCCCEEEEEcCCCcH----HHHHHHHHhC----CCceEEEEEcCHHHHHH
Q psy10572 25 IGYGADISSPHIHAQMLELLKDK------IKPGARILDIGSGSGY----LTACLAYMAG----PEGRVYGVEHVMELAES 90 (204)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~l~~~------~~~~~~vLdiG~G~G~----~~~~l~~~~~----~~~~v~~vD~~~~~~~~ 90 (204)
++...+.-.+.....+.+.+.+. ..++.+|||+|||+|. +++.+++... +..+++|+|+|+.+++.
T Consensus 68 i~~T~FfR~~~~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~ 147 (264)
T smart00138 68 TNETRFFRESKHFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEK 147 (264)
T ss_pred cCCCcccCCcHHHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHH
Confidence 34444444444444444444321 1345799999999996 5666666542 24689999999999999
Q ss_pred HHHHhhhc----Cc------------------cccCccceEEEEecCCCCCCCCCCeeEEEECCCccc--------hhHH
Q psy10572 91 SIKNIDKG----NS------------------ELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFT--------IPQK 140 (204)
Q Consensus 91 a~~~~~~~----~~------------------~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~--------~~~~ 140 (204)
|++..-.. .. +.....++.|.+.|+....++.++||+|++...+.+ +++.
T Consensus 148 Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~ 227 (264)
T smart00138 148 ARAGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNR 227 (264)
T ss_pred HHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHH
Confidence 99864110 00 000013689999998876665688999999776643 5578
Q ss_pred HHHhcCCCcEEEEEec
Q psy10572 141 LLDQLVPGGRMVMPVG 156 (204)
Q Consensus 141 ~~~~Lk~gG~l~~~~~ 156 (204)
+.+.|+|||++++...
T Consensus 228 l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 228 FAEALKPGGYLFLGHS 243 (264)
T ss_pred HHHHhCCCeEEEEECc
Confidence 8899999999998443
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.8e-12 Score=98.32 Aligned_cols=98 Identities=12% Similarity=0.113 Sum_probs=76.3
Q ss_pred HHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecC
Q psy10572 36 IHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNG 115 (204)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~ 115 (204)
....+++.+.....++.+|||+|||+|..+..+++.. ..+++|+|+|+.|++.|+.. ..++++|+
T Consensus 37 wr~~~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~-------------~~~~~~d~ 101 (226)
T PRK05785 37 WRAELVKTILKYCGRPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVA-------------DDKVVGSF 101 (226)
T ss_pred HHHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhc-------------cceEEech
Confidence 3344555554333557899999999999999998875 25999999999999999753 12467787
Q ss_pred CCCCCCCCCeeEEEECCCccc------hhHHHHHhcCCC
Q psy10572 116 KHGYEREAPYDIIHVSPSYFT------IPQKLLDQLVPG 148 (204)
Q Consensus 116 ~~~~~~~~~~D~v~~~~~~~~------~~~~~~~~Lk~g 148 (204)
...++++++||+|++...+++ .++++.++|||.
T Consensus 102 ~~lp~~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 102 EALPFRDKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQ 140 (226)
T ss_pred hhCCCCCCCEEEEEecChhhccCCHHHHHHHHHHHhcCc
Confidence 777777889999999988765 457899999994
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.6e-12 Score=97.10 Aligned_cols=111 Identities=23% Similarity=0.354 Sum_probs=86.8
Q ss_pred HHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC
Q psy10572 39 QMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG 118 (204)
Q Consensus 39 ~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~ 118 (204)
.+...+. ..++.+|||+|||+|..+..+++..+..++++++|+++.+++.++++... ..++.+..+|..+.
T Consensus 30 ~~~~~~~--~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~-------~~~i~~~~~d~~~~ 100 (223)
T TIGR01934 30 RAVKLIG--VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSEL-------PLNIEFIQADAEAL 100 (223)
T ss_pred HHHHHhc--cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhcc-------CCCceEEecchhcC
Confidence 3444443 35788999999999999999998873336899999999999999887641 24688899998766
Q ss_pred CCCCCCeeEEEECCCccc------hhHHHHHhcCCCcEEEEEecCC
Q psy10572 119 YEREAPYDIIHVSPSYFT------IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 119 ~~~~~~~D~v~~~~~~~~------~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
..+.++||+|+++..+++ +++.+.+.|+|||++++.....
T Consensus 101 ~~~~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 146 (223)
T TIGR01934 101 PFEDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFSK 146 (223)
T ss_pred CCCCCcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 555678999998766543 5688899999999999866543
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.6e-13 Score=95.64 Aligned_cols=101 Identities=29% Similarity=0.421 Sum_probs=75.5
Q ss_pred HHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCC
Q psy10572 41 LELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE 120 (204)
Q Consensus 41 ~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 120 (204)
+..+.+...++.+|||+|||.|.++..+.+.. .+++|+|+++.+++. . +......+......
T Consensus 13 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~~~g~D~~~~~~~~------~---------~~~~~~~~~~~~~~ 74 (161)
T PF13489_consen 13 LERLLPRLKPGKRVLDIGCGTGSFLRALAKRG---FEVTGVDISPQMIEK------R---------NVVFDNFDAQDPPF 74 (161)
T ss_dssp HHHHHTCTTTTSEEEEESSTTSHHHHHHHHTT---SEEEEEESSHHHHHH------T---------TSEEEEEECHTHHC
T ss_pred HHHHhcccCCCCEEEEEcCCCCHHHHHHHHhC---CEEEEEECCHHHHhh------h---------hhhhhhhhhhhhhc
Confidence 34344335788899999999999999996653 399999999999888 1 12222222223334
Q ss_pred CCCCeeEEEECCCccch------hHHHHHhcCCCcEEEEEecCCC
Q psy10572 121 REAPYDIIHVSPSYFTI------PQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 121 ~~~~~D~v~~~~~~~~~------~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
+.++||+|+++..++++ ++.+.++|||||.++++++...
T Consensus 75 ~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~ 119 (161)
T PF13489_consen 75 PDGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNRD 119 (161)
T ss_dssp HSSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred cccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence 45789999999998874 5789999999999999998764
|
... |
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.2e-12 Score=101.14 Aligned_cols=117 Identities=19% Similarity=0.224 Sum_probs=91.3
Q ss_pred CChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEE
Q psy10572 32 SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV 111 (204)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 111 (204)
..+.....+...+. ..+.++|||+||++|+.+++++...++++.++++|.++...+.|+++++..+ ..++++++
T Consensus 102 v~~~~g~lL~~L~~--~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aG----l~~~I~li 175 (278)
T PLN02476 102 VSPDQAQLLAMLVQ--ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAG----VSHKVNVK 175 (278)
T ss_pred cCHHHHHHHHHHHH--hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC----CCCcEEEE
Confidence 34444443433333 4567899999999999999999987667899999999999999999998865 23589999
Q ss_pred EecCCCCCC------CCCCeeEEEECCCccc---hhHHHHHhcCCCcEEEEE
Q psy10572 112 VWNGKHGYE------REAPYDIIHVSPSYFT---IPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 112 ~~d~~~~~~------~~~~~D~v~~~~~~~~---~~~~~~~~Lk~gG~l~~~ 154 (204)
.+|+.+... ..++||+|++++.-.. .++.+.++|+|||.+++.
T Consensus 176 ~GdA~e~L~~l~~~~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 176 HGLAAESLKSMIQNGEGSSYDFAFVDADKRMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred EcCHHHHHHHHHhcccCCCCCEEEECCCHHHHHHHHHHHHHhcCCCcEEEEe
Confidence 999764321 1358999999987643 567889999999999883
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.5e-12 Score=96.99 Aligned_cols=116 Identities=22% Similarity=0.369 Sum_probs=92.3
Q ss_pred ChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEE
Q psy10572 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVV 112 (204)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 112 (204)
.+..-..+...+. ..+.++|||||++.|+.+++++..++.+++++++|.+++..+.|+++++..+ ..+++.++.
T Consensus 44 ~~e~g~~L~~L~~--~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag----~~~~i~~~~ 117 (219)
T COG4122 44 DPETGALLRLLAR--LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAG----VDDRIELLL 117 (219)
T ss_pred ChhHHHHHHHHHH--hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcC----CcceEEEEe
Confidence 3555555554444 5788899999999999999999999547899999999999999999998865 134588888
Q ss_pred -ecCCCCCC--CCCCeeEEEECCCcc---chhHHHHHhcCCCcEEEEE
Q psy10572 113 -WNGKHGYE--REAPYDIIHVSPSYF---TIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 113 -~d~~~~~~--~~~~~D~v~~~~~~~---~~~~~~~~~Lk~gG~l~~~ 154 (204)
+|..+... ..++||+|++++.-. ..++.+.++|+|||.+++.
T Consensus 118 ~gdal~~l~~~~~~~fDliFIDadK~~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 118 GGDALDVLSRLLDGSFDLVFIDADKADYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred cCcHHHHHHhccCCCccEEEEeCChhhCHHHHHHHHHHhCCCcEEEEe
Confidence 57664332 358899999997654 4678999999999999983
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.6e-12 Score=100.58 Aligned_cols=118 Identities=18% Similarity=0.163 Sum_probs=88.5
Q ss_pred HHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecC
Q psy10572 36 IHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNG 115 (204)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~ 115 (204)
....|...+.. ..++.+|||||||+|.++..+++.. +.++++++|+++.+++.|++++.... ..++++++.+|+
T Consensus 53 y~~~m~~~l~~-~~~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~----~~~rv~v~~~Da 126 (262)
T PRK04457 53 YTRAMMGFLLF-NPRPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPE----NGERFEVIEADG 126 (262)
T ss_pred HHHHHHHHHhc-CCCCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCC----CCCceEEEECCH
Confidence 34444444331 3456799999999999999999987 77899999999999999999876422 136899999997
Q ss_pred CCCCC-CCCCeeEEEECCCc----------cchhHHHHHhcCCCcEEEEEecCCC
Q psy10572 116 KHGYE-REAPYDIIHVSPSY----------FTIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 116 ~~~~~-~~~~~D~v~~~~~~----------~~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
.+... ..++||+|+++... ..+++.+.+.|+|||++++.++...
T Consensus 127 ~~~l~~~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~ 181 (262)
T PRK04457 127 AEYIAVHRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRD 181 (262)
T ss_pred HHHHHhCCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCc
Confidence 64321 13579999986421 2356889999999999999876554
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=9.1e-13 Score=98.74 Aligned_cols=97 Identities=21% Similarity=0.263 Sum_probs=76.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC--------
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-------- 119 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-------- 119 (204)
++++.+|||+|||+|.++..+++..++.+.|+|+|+++- . ..++++++++|+....
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~---------~-------~~~~v~~i~~D~~~~~~~~~i~~~ 112 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM---------D-------PIVGVDFLQGDFRDELVLKALLER 112 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc---------c-------CCCCcEEEecCCCChHHHHHHHHH
Confidence 477889999999999999999998756679999999881 0 1246889999977632
Q ss_pred CCCCCeeEEEECCCcc-----------------chhHHHHHhcCCCcEEEEEecCCCC
Q psy10572 120 EREAPYDIIHVSPSYF-----------------TIPQKLLDQLVPGGRMVMPVGEPFK 160 (204)
Q Consensus 120 ~~~~~~D~v~~~~~~~-----------------~~~~~~~~~Lk~gG~l~~~~~~~~~ 160 (204)
...++||+|+++.... .+++.+.++|+|||.+++.++....
T Consensus 113 ~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~ 170 (209)
T PRK11188 113 VGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEG 170 (209)
T ss_pred hCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcC
Confidence 3457899999976321 2457888999999999998876653
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.9e-13 Score=96.38 Aligned_cols=99 Identities=24% Similarity=0.328 Sum_probs=80.7
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC--CCCCC
Q psy10572 47 KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY--EREAP 124 (204)
Q Consensus 47 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~ 124 (204)
.+.|+.+|||+|||.|.+...+.+. .++..+|+|+++..+..+.++ .+.++++|+.... +++++
T Consensus 10 ~I~pgsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~cv~r------------Gv~Viq~Dld~gL~~f~d~s 75 (193)
T PF07021_consen 10 WIEPGSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAACVAR------------GVSVIQGDLDEGLADFPDQS 75 (193)
T ss_pred HcCCCCEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHHHHc------------CCCEEECCHHHhHhhCCCCC
Confidence 3679999999999999999988886 457999999999988888654 5778999987543 67789
Q ss_pred eeEEEECCCccchh---HHHHHhcCCCcEEEEEecCCC
Q psy10572 125 YDIIHVSPSYFTIP---QKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 125 ~D~v~~~~~~~~~~---~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
||.||++..+..+. .-+...|+-|...+++.++-.
T Consensus 76 FD~VIlsqtLQ~~~~P~~vL~EmlRVgr~~IVsFPNFg 113 (193)
T PF07021_consen 76 FDYVILSQTLQAVRRPDEVLEEMLRVGRRAIVSFPNFG 113 (193)
T ss_pred ccEEehHhHHHhHhHHHHHHHHHHHhcCeEEEEecChH
Confidence 99999998886643 345566788989998887764
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.5e-12 Score=114.72 Aligned_cols=148 Identities=13% Similarity=0.053 Sum_probs=110.3
Q ss_pred CCccccccccccCCcccCChHHHHHHHHHHhccCC---CCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHH
Q psy10572 15 NEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIK---PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESS 91 (204)
Q Consensus 15 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a 91 (204)
...|+...+....+..++.++....+-. +..... ++.+|||+|||+|.+++.+++.. +..+++++|+|+.+++.|
T Consensus 81 ~~~F~~l~~~V~p~VLIPRpeTE~lve~-L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~-~~~~v~avDis~~Al~~A 158 (1082)
T PLN02672 81 FRNRKKLTMMEIPSIFIPEDWSFTFYEG-LNRHPDSIFRDKTVAELGCGNGWISIAIAEKW-LPSKVYGLDINPRAVKVA 158 (1082)
T ss_pred eEEecCCceeeCCCcccCchhHHHHHHH-HHhcccccCCCCEEEEEecchHHHHHHHHHHC-CCCEEEEEECCHHHHHHH
Confidence 4466777788888899988877665444 442211 24689999999999999999987 567999999999999999
Q ss_pred HHHhhhcCcc-----------ccCccceEEEEecCCCCCCCC-CCeeEEEECCCccc-----------------------
Q psy10572 92 IKNIDKGNSE-----------LLDQGRVQFVVWNGKHGYERE-APYDIIHVSPSYFT----------------------- 136 (204)
Q Consensus 92 ~~~~~~~~~~-----------~~~~~~~~~~~~d~~~~~~~~-~~~D~v~~~~~~~~----------------------- 136 (204)
+.|+..+... .....+++++++|+....... .+||+|++|+++-.
T Consensus 159 ~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~ 238 (1082)
T PLN02672 159 WINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSL 238 (1082)
T ss_pred HHHHHHcCcccccccccccccccccccEEEEECchhhhccccCCceEEEEECCCcCCCcchhhcChhhhhcccccccccc
Confidence 9999875311 011247999999987654322 36999999987510
Q ss_pred ---------------------hhHHHHHhcCCCcEEEEEecCCCCcceE
Q psy10572 137 ---------------------IPQKLLDQLVPGGRMVMPVGEPFKGQNL 164 (204)
Q Consensus 137 ---------------------~~~~~~~~Lk~gG~l~~~~~~~~~~~~~ 164 (204)
++..+.++|+|||.+++.+...+.....
T Consensus 239 ~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG~~q~~~v~ 287 (1082)
T PLN02672 239 SNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMGGRPGQAVC 287 (1082)
T ss_pred CccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHH
Confidence 1245667999999999999988766444
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.9e-12 Score=93.85 Aligned_cols=99 Identities=18% Similarity=0.135 Sum_probs=75.0
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
..++.++||+|||.|..+.+|++.. ..|+++|.|+..++.+++...... -.++....|+.....+ +.||+
T Consensus 28 ~~~~g~~LDlgcG~GRNalyLA~~G---~~VtAvD~s~~al~~l~~~a~~~~------l~i~~~~~Dl~~~~~~-~~yD~ 97 (192)
T PF03848_consen 28 LLKPGKALDLGCGEGRNALYLASQG---FDVTAVDISPVALEKLQRLAEEEG------LDIRTRVADLNDFDFP-EEYDF 97 (192)
T ss_dssp TS-SSEEEEES-TTSHHHHHHHHTT----EEEEEESSHHHHHHHHHHHHHTT-------TEEEEE-BGCCBS-T-TTEEE
T ss_pred hcCCCcEEEcCCCCcHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHhhcC------ceeEEEEecchhcccc-CCcCE
Confidence 3456799999999999999999975 399999999999999988776533 2488889997765554 67999
Q ss_pred EEECCCccc--------hhHHHHHhcCCCcEEEEEec
Q psy10572 128 IHVSPSYFT--------IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 128 v~~~~~~~~--------~~~~~~~~Lk~gG~l~~~~~ 156 (204)
|++...+.. +++.+...++|||++++.+.
T Consensus 98 I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 98 IVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp EEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence 987544432 45778889999999888553
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.43 E-value=4e-12 Score=100.80 Aligned_cols=101 Identities=15% Similarity=0.173 Sum_probs=81.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
..+..+|||+|||+|.++..+++.. |..+++++|. +.+++.+++++...+ ..++++++.+|+.....+ .+|+
T Consensus 147 ~~~~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~g----l~~rv~~~~~d~~~~~~~--~~D~ 218 (306)
T TIGR02716 147 LDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKG----VADRMRGIAVDIYKESYP--EADA 218 (306)
T ss_pred CCCCCEEEEeCCchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHhCC----ccceEEEEecCccCCCCC--CCCE
Confidence 4677899999999999999999998 7789999997 789999998887643 235799999998754443 3698
Q ss_pred EEECCCccc--------hhHHHHHhcCCCcEEEEEec
Q psy10572 128 IHVSPSYFT--------IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 128 v~~~~~~~~--------~~~~~~~~Lk~gG~l~~~~~ 156 (204)
|++...+++ +++++.+.|+|||++++...
T Consensus 219 v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 219 VLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred EEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 877665543 45788899999999988643
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.8e-12 Score=98.02 Aligned_cols=102 Identities=22% Similarity=0.334 Sum_probs=78.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC---CCCCC
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY---EREAP 124 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~ 124 (204)
+.++.+|||+|||+|.++..++...++.+.|+++|+++.+.+........ .+|+.++..|+.... ....+
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~-------r~NI~~I~~Da~~p~~y~~~~~~ 202 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK-------RPNIVPIIEDARYPQKYRMLVPM 202 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh-------cCCCEEEECCccChhhhhcccCC
Confidence 58889999999999999999999986677999999998766555444332 247888888875421 12247
Q ss_pred eeEEEECCCccc----hhHHHHHhcCCCcEEEEEec
Q psy10572 125 YDIIHVSPSYFT----IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 125 ~D~v~~~~~~~~----~~~~~~~~Lk~gG~l~~~~~ 156 (204)
+|+|+++....+ +..++.+.|||||.|++.+.
T Consensus 203 vDvV~~Dva~pdq~~il~~na~r~LKpGG~~vI~ik 238 (293)
T PTZ00146 203 VDVIFADVAQPDQARIVALNAQYFLKNGGHFIISIK 238 (293)
T ss_pred CCEEEEeCCCcchHHHHHHHHHHhccCCCEEEEEEe
Confidence 999999876554 33577889999999999543
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.8e-13 Score=99.07 Aligned_cols=115 Identities=23% Similarity=0.336 Sum_probs=89.1
Q ss_pred HHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEec
Q psy10572 35 HIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWN 114 (204)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d 114 (204)
.....++..+.. .....+||||||+.|+.++++++.++++++++.+|.++...+.|+++++..+ ...+++++.+|
T Consensus 31 ~~~g~lL~~l~~-~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag----~~~~I~~~~gd 105 (205)
T PF01596_consen 31 PETGQLLQMLVR-LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAG----LDDRIEVIEGD 105 (205)
T ss_dssp HHHHHHHHHHHH-HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTT----GGGGEEEEES-
T ss_pred HHHHHHHHHHHH-hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcC----CCCcEEEEEec
Confidence 334444555543 3566799999999999999999988667899999999999999999998754 23689999999
Q ss_pred CCCCC------CCCCCeeEEEECCCccc---hhHHHHHhcCCCcEEEEE
Q psy10572 115 GKHGY------EREAPYDIIHVSPSYFT---IPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 115 ~~~~~------~~~~~~D~v~~~~~~~~---~~~~~~~~Lk~gG~l~~~ 154 (204)
+.+.. .+.++||+|++++.-.. .++.+.++|+|||.+++.
T Consensus 106 a~~~l~~l~~~~~~~~fD~VFiDa~K~~y~~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 106 ALEVLPELANDGEEGQFDFVFIDADKRNYLEYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp HHHHHHHHHHTTTTTSEEEEEEESTGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred cHhhHHHHHhccCCCceeEEEEcccccchhhHHHHHhhhccCCeEEEEc
Confidence 76421 11358999999987665 457888999999999983
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.7e-12 Score=92.46 Aligned_cols=105 Identities=20% Similarity=0.215 Sum_probs=80.4
Q ss_pred HHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC
Q psy10572 39 QMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG 118 (204)
Q Consensus 39 ~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~ 118 (204)
.+++.+. +.++.+|||+|||+|.++..+++.. .+++++|+++.+++.+++++.. .++++++++|+...
T Consensus 4 ~i~~~~~--~~~~~~vLEiG~G~G~lt~~l~~~~---~~v~~vE~~~~~~~~~~~~~~~-------~~~v~ii~~D~~~~ 71 (169)
T smart00650 4 KIVRAAN--LRPGDTVLEIGPGKGALTEELLERA---ARVTAIEIDPRLAPRLREKFAA-------ADNLTVIHGDALKF 71 (169)
T ss_pred HHHHhcC--CCCcCEEEEECCCccHHHHHHHhcC---CeEEEEECCHHHHHHHHHHhcc-------CCCEEEEECchhcC
Confidence 4455554 5677899999999999999999873 4999999999999999988753 24799999998876
Q ss_pred CCCCCCeeEEEECCCccc---hhHHHHHh--cCCCcEEEEEe
Q psy10572 119 YEREAPYDIIHVSPSYFT---IPQKLLDQ--LVPGGRMVMPV 155 (204)
Q Consensus 119 ~~~~~~~D~v~~~~~~~~---~~~~~~~~--Lk~gG~l~~~~ 155 (204)
..+...+|.|++|.+++. ++..+... +.++|.+++..
T Consensus 72 ~~~~~~~d~vi~n~Py~~~~~~i~~~l~~~~~~~~~~l~~q~ 113 (169)
T smart00650 72 DLPKLQPYKVVGNLPYNISTPILFKLLEEPPAFRDAVLMVQK 113 (169)
T ss_pred CccccCCCEEEECCCcccHHHHHHHHHhcCCCcceEEEEEEH
Confidence 655557999999999874 33334332 34677776644
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.2e-12 Score=94.05 Aligned_cols=112 Identities=11% Similarity=0.100 Sum_probs=83.0
Q ss_pred cCCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhC--CCceEEEEEcCHHHHHHHHHHhhhcCcccc
Q psy10572 26 GYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAG--PEGRVYGVEHVMELAESSIKNIDKGNSELL 103 (204)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ 103 (204)
..|+++++..+...++.. ...+.+|||+|||+|.++..+++... +..+++++|+++.+++.|+++.
T Consensus 29 ~~GqFfTP~~iAr~~~i~----~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~-------- 96 (241)
T PHA03412 29 ELGAFFTPIGLARDFTID----ACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV-------- 96 (241)
T ss_pred cCCccCCCHHHHHHHHHh----ccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc--------
Confidence 357888888876665422 23467999999999999999988631 2458999999999999999764
Q ss_pred CccceEEEEecCCCCCCCCCCeeEEEECCCccc------------------hhHHHHHhcCCCcEEEE
Q psy10572 104 DQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFT------------------IPQKLLDQLVPGGRMVM 153 (204)
Q Consensus 104 ~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~------------------~~~~~~~~Lk~gG~l~~ 153 (204)
.++.++.+|+..... .++||+|++|+++.. +++.+.+++++|+. ++
T Consensus 97 --~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-IL 160 (241)
T PHA03412 97 --PEATWINADALTTEF-DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF-II 160 (241)
T ss_pred --cCCEEEEcchhcccc-cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE-Ee
Confidence 357888899765433 368999999999852 33566675666664 44
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.1e-12 Score=94.04 Aligned_cols=105 Identities=21% Similarity=0.158 Sum_probs=75.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCc-------cccCccceEEEEecCCCCCCC
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNS-------ELLDQGRVQFVVWNGKHGYER 121 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~~d~~~~~~~ 121 (204)
.++.+|||+|||.|..+.+++.+. .+|+|+|+|+.+++.+......... +.....+++++.+|+.+....
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G---~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~ 109 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQG---HRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAA 109 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCC---CeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcc
Confidence 567899999999999999999864 4999999999999986432111000 000124689999998765432
Q ss_pred -CCCeeEEEECCCccc--------hhHHHHHhcCCCcEEEEEec
Q psy10572 122 -EAPYDIIHVSPSYFT--------IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 122 -~~~~D~v~~~~~~~~--------~~~~~~~~Lk~gG~l~~~~~ 156 (204)
.++||.|+-...+.+ .++.+.++|+|||.+++.+.
T Consensus 110 ~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~ 153 (213)
T TIGR03840 110 DLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITL 153 (213)
T ss_pred cCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence 357999987766544 45788899999998666554
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.8e-12 Score=105.31 Aligned_cols=155 Identities=14% Similarity=0.131 Sum_probs=108.9
Q ss_pred ccccCCccc-CChHHHHHHHHHHhccC--CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcC
Q psy10572 23 RQIGYGADI-SSPHIHAQMLELLKDKI--KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGN 99 (204)
Q Consensus 23 ~~~~~~~~~-~~~~~~~~~~~~l~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~ 99 (204)
+.++.+.+. .+..+...+...+...+ .++.+|||+|||+|.+++.++... .+++|+|+++.+++.|+.+++.++
T Consensus 203 ~~~~~~~F~Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~---~~v~~vE~~~~av~~a~~N~~~~~ 279 (374)
T TIGR02085 203 LVIRPQSFFQTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGPD---TQLTGIEIESEAIACAQQSAQMLG 279 (374)
T ss_pred EEECCCccccCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcC---CeEEEEECCHHHHHHHHHHHHHcC
Confidence 334444444 45556666655554332 356799999999999999998753 489999999999999999998754
Q ss_pred ccccCccceEEEEecCCCCCC-CCCCeeEEEECCCccchhHHH---HHhcCCCcEEEEEecCCCCcceEEEEeecCCceE
Q psy10572 100 SELLDQGRVQFVVWNGKHGYE-REAPYDIIHVSPSYFTIPQKL---LDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYT 175 (204)
Q Consensus 100 ~~~~~~~~~~~~~~d~~~~~~-~~~~~D~v~~~~~~~~~~~~~---~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~ 175 (204)
..+++++.+|+..... ...+||+|+++++...+...+ ...++|++++++++........+..+ ..+
T Consensus 280 -----~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~G~~~~~l~~l~~~~p~~ivyvsc~p~TlaRDl~~L-----~gy 349 (374)
T TIGR02085 280 -----LDNLSFAALDSAKFATAQMSAPELVLVNPPRRGIGKELCDYLSQMAPKFILYSSCNAQTMAKDIAEL-----SGY 349 (374)
T ss_pred -----CCcEEEEECCHHHHHHhcCCCCCEEEECCCCCCCcHHHHHHHHhcCCCeEEEEEeCHHHHHHHHHHh-----cCc
Confidence 3479999999754322 124599999999986543322 34579999999998766533333333 246
Q ss_pred EEeeeeeeeeeeeccc
Q psy10572 176 IVTTVVRGVRTNPLYR 191 (204)
Q Consensus 176 ~~~~~~~~~~~~pl~~ 191 (204)
.+ ..+.+..++|.+.
T Consensus 350 ~l-~~~~~~DmFPqT~ 364 (374)
T TIGR02085 350 QI-ERVQLFDMFPHTS 364 (374)
T ss_pred eE-EEEEEeccCCCCC
Confidence 66 6777777887654
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.5e-12 Score=105.79 Aligned_cols=106 Identities=20% Similarity=0.297 Sum_probs=81.3
Q ss_pred HHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCC
Q psy10572 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKH 117 (204)
Q Consensus 38 ~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 117 (204)
..+.+.+. ..++.+|||+|||+|.++..+++... +++|+|+++.+++.++..... .++++++.+|+..
T Consensus 27 ~~il~~l~--~~~~~~vLDlGcG~G~~~~~la~~~~---~v~giD~s~~~l~~a~~~~~~-------~~~i~~~~~d~~~ 94 (475)
T PLN02336 27 PEILSLLP--PYEGKSVLELGAGIGRFTGELAKKAG---QVIALDFIESVIKKNESINGH-------YKNVKFMCADVTS 94 (475)
T ss_pred hHHHhhcC--ccCCCEEEEeCCCcCHHHHHHHhhCC---EEEEEeCCHHHHHHHHHHhcc-------CCceEEEEecccc
Confidence 34444443 34567999999999999999998753 899999999999887653221 3578999999753
Q ss_pred --CCCCCCCeeEEEECCCccc--------hhHHHHHhcCCCcEEEEEe
Q psy10572 118 --GYEREAPYDIIHVSPSYFT--------IPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 118 --~~~~~~~~D~v~~~~~~~~--------~~~~~~~~Lk~gG~l~~~~ 155 (204)
..++.++||+|+++.++++ +++++.++|+|||++++..
T Consensus 95 ~~~~~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d 142 (475)
T PLN02336 95 PDLNISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRE 142 (475)
T ss_pred cccCCCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 2345578999999887654 4467889999999998854
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.2e-11 Score=94.85 Aligned_cols=117 Identities=15% Similarity=0.194 Sum_probs=87.1
Q ss_pred CCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCcc
Q psy10572 27 YGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQG 106 (204)
Q Consensus 27 ~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~ 106 (204)
.|++.+++.+...++ +. .....+|||+|||+|.++..+++.. +..+++++|+++.+++.++++. +
T Consensus 45 ~G~FfTP~~i~~~f~--~~--~~~~grVLDLGcGsGilsl~la~r~-~~~~V~gVDisp~al~~Ar~n~----------~ 109 (279)
T PHA03411 45 SGAFFTPEGLAWDFT--ID--AHCTGKVLDLCAGIGRLSFCMLHRC-KPEKIVCVELNPEFARIGKRLL----------P 109 (279)
T ss_pred ceeEcCCHHHHHHHH--hc--cccCCeEEEcCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhC----------c
Confidence 578887777764442 22 3445799999999999999888875 3469999999999999998763 3
Q ss_pred ceEEEEecCCCCCCCCCCeeEEEECCCccch--------------------------hHHHHHhcCCCcEEEEEecCCC
Q psy10572 107 RVQFVVWNGKHGYEREAPYDIIHVSPSYFTI--------------------------PQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 107 ~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~--------------------------~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
+++++.+|+.... ...+||+|++|+++.+. +.....+|+|+|.+++.+.+.+
T Consensus 110 ~v~~v~~D~~e~~-~~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~ 187 (279)
T PHA03411 110 EAEWITSDVFEFE-SNEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRP 187 (279)
T ss_pred CCEEEECchhhhc-ccCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccc
Confidence 6788999977654 34679999999988541 1333477899998887655443
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.1e-12 Score=98.11 Aligned_cols=109 Identities=22% Similarity=0.220 Sum_probs=82.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCC-CCCCeeE
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE-REAPYDI 127 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~ 127 (204)
..+.+||++|||.|..+..++++. ...+++++|+++.+++.|++.+..........++++++.+|+..... ..++||+
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~-~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDv 153 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHP-SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDV 153 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCC-CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccE
Confidence 456799999999999999998864 34589999999999999999876421111124689999999764322 3468999
Q ss_pred EEECCCcc----------chhHHHHHhcCCCcEEEEEecCC
Q psy10572 128 IHVSPSYF----------TIPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 128 v~~~~~~~----------~~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
|+++...+ .+.+.+.+.|+|||++++...+.
T Consensus 154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~ 194 (283)
T PRK00811 154 IIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGSP 194 (283)
T ss_pred EEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCCc
Confidence 99975332 23478889999999999865443
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.7e-12 Score=102.68 Aligned_cols=106 Identities=21% Similarity=0.249 Sum_probs=81.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCC----CCCC
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE----REAP 124 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~ 124 (204)
.++.+|||+|||+|.++..++.. ...+++++|.|+.+++.|++++..++ +...+++++.+|+..... ...+
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~--ga~~V~~VD~s~~al~~a~~N~~~Ng---l~~~~v~~i~~D~~~~l~~~~~~~~~ 293 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMG--GCSQVVSVDTSQEALDIARQNVELNK---LDLSKAEFVRDDVFKLLRTYRDRGEK 293 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHHHHcC---CCCCcEEEEEccHHHHHHHHHhcCCC
Confidence 46789999999999998876653 33489999999999999999998865 222478999999765321 2357
Q ss_pred eeEEEECCCccc---------------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 125 YDIIHVSPSYFT---------------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 125 ~D~v~~~~~~~~---------------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
||+|+++++... +...+.++|+|||.++++.++..
T Consensus 294 fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~ 343 (396)
T PRK15128 294 FDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGL 343 (396)
T ss_pred CCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCc
Confidence 999999988632 23467799999999998666543
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.38 E-value=8e-12 Score=95.38 Aligned_cols=114 Identities=17% Similarity=0.233 Sum_probs=89.3
Q ss_pred hHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe
Q psy10572 34 PHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW 113 (204)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 113 (204)
+.....+ ..+.. ..+..+|||||++.|+.+++++...+++++++++|.++...+.|++++...+ ...+++++.+
T Consensus 65 ~~~g~lL-~~l~~-~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag----~~~~I~~~~G 138 (247)
T PLN02589 65 ADEGQFL-NMLLK-LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAG----VAHKIDFREG 138 (247)
T ss_pred HHHHHHH-HHHHH-HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCC----CCCceEEEec
Confidence 4444333 33332 4566799999999999999999987677899999999999999999998754 2468999999
Q ss_pred cCCCCCCC-------CCCeeEEEECCCccc---hhHHHHHhcCCCcEEEE
Q psy10572 114 NGKHGYER-------EAPYDIIHVSPSYFT---IPQKLLDQLVPGGRMVM 153 (204)
Q Consensus 114 d~~~~~~~-------~~~~D~v~~~~~~~~---~~~~~~~~Lk~gG~l~~ 153 (204)
++.+.... .++||+|++++.-.. ..+.+.++|+|||.+++
T Consensus 139 ~a~e~L~~l~~~~~~~~~fD~iFiDadK~~Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 139 PALPVLDQMIEDGKYHGTFDFIFVDADKDNYINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred cHHHHHHHHHhccccCCcccEEEecCCHHHhHHHHHHHHHhcCCCeEEEE
Confidence 97643211 268999999987544 45788899999999987
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.2e-11 Score=96.30 Aligned_cols=117 Identities=15% Similarity=0.124 Sum_probs=81.6
Q ss_pred HHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecC
Q psy10572 36 IHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNG 115 (204)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~ 115 (204)
+.....+.+...+.++.+|||+|||+|..+..+++.+....+++++|+|+.+++.+++++.... ..-++.++++|+
T Consensus 49 il~~~~~~ia~~~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~----p~~~v~~i~gD~ 124 (301)
T TIGR03438 49 ILERHADEIAAATGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADY----PQLEVHGICADF 124 (301)
T ss_pred HHHHHHHHHHHhhCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhC----CCceEEEEEEcc
Confidence 3444445454445677899999999999999999987324689999999999999998876521 112467788997
Q ss_pred CCCC-CCCC----CeeEEEECCCccc--------hhHHHHHhcCCCcEEEEEec
Q psy10572 116 KHGY-EREA----PYDIIHVSPSYFT--------IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 116 ~~~~-~~~~----~~D~v~~~~~~~~--------~~~~~~~~Lk~gG~l~~~~~ 156 (204)
.... .... ...+++++..+.. +++++.+.|+|||.+++.+.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d 178 (301)
T TIGR03438 125 TQPLALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVD 178 (301)
T ss_pred cchhhhhcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 6532 1111 2334444433332 46788999999999998553
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.3e-12 Score=92.73 Aligned_cols=104 Identities=20% Similarity=0.238 Sum_probs=81.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC---CCCCCCe
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG---YEREAPY 125 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~~ 125 (204)
.....+||||||.|.+...++... |+..++|+|+....+..+..++... +.+|+.++++|+... .++++++
T Consensus 16 ~~~~l~lEIG~G~G~~l~~~A~~~-Pd~n~iGiE~~~~~v~~a~~~~~~~-----~l~Nv~~~~~da~~~l~~~~~~~~v 89 (195)
T PF02390_consen 16 NDNPLILEIGCGKGEFLIELAKRN-PDINFIGIEIRKKRVAKALRKAEKR-----GLKNVRFLRGDARELLRRLFPPGSV 89 (195)
T ss_dssp SCCEEEEEET-TTSHHHHHHHHHS-TTSEEEEEES-HHHHHHHHHHHHHH-----TTSSEEEEES-CTTHHHHHSTTTSE
T ss_pred CCCCeEEEecCCCCHHHHHHHHHC-CCCCEEEEecchHHHHHHHHHHHhh-----cccceEEEEccHHHHHhhcccCCch
Confidence 344489999999999999999998 8899999999999999998888774 368999999997752 3456899
Q ss_pred eEEEECCCccc--------------hhHHHHHhcCCCcEEEEEecCC
Q psy10572 126 DIIHVSPSYFT--------------IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 126 D~v~~~~~~~~--------------~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
|.|+++.+.++ +++.+.+.|+|||.|.+.+-..
T Consensus 90 ~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~ 136 (195)
T PF02390_consen 90 DRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVE 136 (195)
T ss_dssp EEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-H
T ss_pred heEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCH
Confidence 99999988765 5578899999999998877544
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.2e-11 Score=91.42 Aligned_cols=95 Identities=22% Similarity=0.256 Sum_probs=72.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC--------
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-------- 119 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-------- 119 (204)
+.++.+|||+|||+|.++..+++...+.++++++|+++.+ . .+++.++.+|..+..
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---------~-------~~~i~~~~~d~~~~~~~~~l~~~ 93 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---------P-------IENVDFIRGDFTDEEVLNKIRER 93 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---------c-------CCCceEEEeeCCChhHHHHHHHH
Confidence 5788999999999999999998876455689999999854 1 135778888865421
Q ss_pred CCCCCeeEEEECCCc-----------------cchhHHHHHhcCCCcEEEEEecCC
Q psy10572 120 EREAPYDIIHVSPSY-----------------FTIPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 120 ~~~~~~D~v~~~~~~-----------------~~~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
.+.++||+|+++... ...++.+.+.|+|||.+++.+...
T Consensus 94 ~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~ 149 (188)
T TIGR00438 94 VGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQG 149 (188)
T ss_pred hCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccC
Confidence 234679999987531 124577889999999999976543
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.8e-11 Score=91.46 Aligned_cols=105 Identities=20% Similarity=0.228 Sum_probs=75.8
Q ss_pred HHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC
Q psy10572 39 QMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG 118 (204)
Q Consensus 39 ~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~ 118 (204)
.+++.+.....++.+|||+|||+|.++..+++.. .+++|+|+++.+++.|++++.... ...++.+..+|+...
T Consensus 44 ~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~---~~v~gvD~s~~~i~~a~~~~~~~~----~~~~i~~~~~d~~~~ 116 (219)
T TIGR02021 44 KLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRG---AIVKAVDISEQMVQMARNRAQGRD----VAGNVEFEVNDLLSL 116 (219)
T ss_pred HHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcC----CCCceEEEECChhhC
Confidence 3444443213467899999999999999998753 389999999999999999886532 124789999997654
Q ss_pred CCCCCCeeEEEECCCccc--------hhHHHHHhcCCCcEEEE
Q psy10572 119 YEREAPYDIIHVSPSYFT--------IPQKLLDQLVPGGRMVM 153 (204)
Q Consensus 119 ~~~~~~~D~v~~~~~~~~--------~~~~~~~~Lk~gG~l~~ 153 (204)
. ++||+|++...+.+ .+..+.+.+++++.+.+
T Consensus 117 ~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 117 C---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred C---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 3 67999998766543 23566677776555443
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.3e-11 Score=91.28 Aligned_cols=96 Identities=17% Similarity=0.117 Sum_probs=68.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHh---CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCe
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMA---GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPY 125 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~---~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 125 (204)
.++.+|||+|||+|.++..+++.. ++..+++|+|+++.+++.|+++... .++.+...+......+.++|
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~--------~~~~~~~~~~~~l~~~~~~f 130 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR--------PGVTFRQAVSDELVAEGERF 130 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc--------CCCeEEEEecccccccCCCc
Confidence 466799999999999998887653 2346999999999999999887543 24555555443333345789
Q ss_pred eEEEECCCccchh--------HHHHHhcCCCcEEEEE
Q psy10572 126 DIIHVSPSYFTIP--------QKLLDQLVPGGRMVMP 154 (204)
Q Consensus 126 D~v~~~~~~~~~~--------~~~~~~Lk~gG~l~~~ 154 (204)
|+|+++..++++. +++.++++ |.+++.
T Consensus 131 D~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~ 165 (232)
T PRK06202 131 DVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHN 165 (232)
T ss_pred cEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEe
Confidence 9999998887643 46667776 444443
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.3e-12 Score=104.14 Aligned_cols=146 Identities=17% Similarity=0.155 Sum_probs=100.5
Q ss_pred ChHHHHHHHHHHhcc--CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEE
Q psy10572 33 SPHIHAQMLELLKDK--IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQF 110 (204)
Q Consensus 33 ~~~~~~~~~~~l~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 110 (204)
++.....+.+.+... +.++.+|||+|||+|.++..+++... +++|+|+++.+++.|++++..++ ..++++
T Consensus 273 N~~~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~~---~V~~vE~~~~av~~a~~n~~~~~-----~~nv~~ 344 (431)
T TIGR00479 273 NSGQNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQAK---SVVGIEVVPESVEKAQQNAELNG-----IANVEF 344 (431)
T ss_pred CHHHHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhCC---EEEEEEcCHHHHHHHHHHHHHhC-----CCceEE
Confidence 444444455444433 35668999999999999999998753 89999999999999999998754 458999
Q ss_pred EEecCCCCC----CCCCCeeEEEECCCccc----hhHHHHHhcCCCcEEEEEecCCCCcceEEEEeecCCceEEEeeeee
Q psy10572 111 VVWNGKHGY----EREAPYDIIHVSPSYFT----IPQKLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYTIVTTVVR 182 (204)
Q Consensus 111 ~~~d~~~~~----~~~~~~D~v~~~~~~~~----~~~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (204)
+.+|+.+.. ....+||+|+++++... +++. ...++|++++++++........+..+. ...+.. ..+.
T Consensus 345 ~~~d~~~~l~~~~~~~~~~D~vi~dPPr~G~~~~~l~~-l~~l~~~~ivyvsc~p~tlard~~~l~---~~gy~~-~~~~ 419 (431)
T TIGR00479 345 LAGTLETVLPKQPWAGQIPDVLLLDPPRKGCAAEVLRT-IIELKPERIVYVSCNPATLARDLEFLC---KEGYGI-TWVQ 419 (431)
T ss_pred EeCCHHHHHHHHHhcCCCCCEEEECcCCCCCCHHHHHH-HHhcCCCEEEEEcCCHHHHHHHHHHHH---HCCeeE-EEEE
Confidence 999975421 22356999999988654 2333 335889998888775433222222222 233556 6667
Q ss_pred eeeeeeccc
Q psy10572 183 GVRTNPLYR 191 (204)
Q Consensus 183 ~~~~~pl~~ 191 (204)
.+...|.+.
T Consensus 420 ~~DmFP~T~ 428 (431)
T TIGR00479 420 PVDMFPHTA 428 (431)
T ss_pred EeccCCCCC
Confidence 777777653
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.4e-11 Score=107.37 Aligned_cols=106 Identities=15% Similarity=0.187 Sum_probs=83.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCC-CCCCeeE
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE-REAPYDI 127 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~ 127 (204)
.++.+|||+|||+|.++..+++.. ..+|+++|.|+.+++.|++++..++ +...+++++++|..+... ...+||+
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~G--a~~V~~vD~s~~al~~a~~N~~~ng---~~~~~v~~i~~D~~~~l~~~~~~fDl 611 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALGG--AKSTTTVDMSNTYLEWAERNFALNG---LSGRQHRLIQADCLAWLKEAREQFDL 611 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHhC---CCccceEEEEccHHHHHHHcCCCcCE
Confidence 357899999999999999999853 2379999999999999999998865 222479999999764321 1367999
Q ss_pred EEECCCcc-----------------chhHHHHHhcCCCcEEEEEecCCC
Q psy10572 128 IHVSPSYF-----------------TIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 128 v~~~~~~~-----------------~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
|+++++.. .+...+.++|+|||.+++++....
T Consensus 612 IilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~ 660 (702)
T PRK11783 612 IFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRG 660 (702)
T ss_pred EEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc
Confidence 99998852 144677889999999998776554
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.8e-11 Score=91.05 Aligned_cols=101 Identities=18% Similarity=0.262 Sum_probs=78.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC-CCCCCee
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-EREAPYD 126 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D 126 (204)
..++.+|||+|||+|.++..+++.. ++++++|+++.+++.++.++.... .++.+...+..+.. ...++||
T Consensus 46 ~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~------~~~~~~~~~~~~~~~~~~~~fD 116 (233)
T PRK05134 46 GLFGKRVLDVGCGGGILSESMARLG---ADVTGIDASEENIEVARLHALESG------LKIDYRQTTAEELAAEHPGQFD 116 (233)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHcC---CeEEEEcCCHHHHHHHHHHHHHcC------CceEEEecCHHHhhhhcCCCcc
Confidence 4567899999999999998888753 489999999999999998876532 24667777655432 2346899
Q ss_pred EEEECCCccc------hhHHHHHhcCCCcEEEEEecC
Q psy10572 127 IIHVSPSYFT------IPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 127 ~v~~~~~~~~------~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
+|++...+.+ +++.+.+.|+|||.+++..+.
T Consensus 117 ~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 117 VVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred EEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEecC
Confidence 9998765543 557889999999999988764
|
|
| >KOG4300|consensus | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.7e-11 Score=89.08 Aligned_cols=99 Identities=20% Similarity=0.302 Sum_probs=76.7
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceE-EEEecCCCCC-CCCCCeeE
Q psy10572 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQ-FVVWNGKHGY-EREAPYDI 127 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~d~~~~~-~~~~~~D~ 127 (204)
....|||+|||+|.--.+.--. +.++|+++|+++.|-+.+.+.++... ..++. |+.++..... .+++++|.
T Consensus 76 ~K~~vLEvgcGtG~Nfkfy~~~--p~~svt~lDpn~~mee~~~ks~~E~k-----~~~~~~fvva~ge~l~~l~d~s~Dt 148 (252)
T KOG4300|consen 76 GKGDVLEVGCGTGANFKFYPWK--PINSVTCLDPNEKMEEIADKSAAEKK-----PLQVERFVVADGENLPQLADGSYDT 148 (252)
T ss_pred CccceEEecccCCCCcccccCC--CCceEEEeCCcHHHHHHHHHHHhhcc-----CcceEEEEeechhcCcccccCCeee
Confidence 3346799999999875444322 56799999999999999999987743 34666 8888877655 56789999
Q ss_pred EEECCCcc------chhHHHHHhcCCCcEEEEEe
Q psy10572 128 IHVSPSYF------TIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 128 v~~~~~~~------~~~~~~~~~Lk~gG~l~~~~ 155 (204)
|++..++- ..+++..++|||||++++..
T Consensus 149 VV~TlvLCSve~~~k~L~e~~rlLRpgG~iifiE 182 (252)
T KOG4300|consen 149 VVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIE 182 (252)
T ss_pred EEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEEe
Confidence 98876552 26689999999999999843
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.30 E-value=9.7e-12 Score=100.57 Aligned_cols=151 Identities=17% Similarity=0.143 Sum_probs=106.2
Q ss_pred Cccc-CChHHHHHHHHHHhccCCC-CCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCc
Q psy10572 28 GADI-SSPHIHAQMLELLKDKIKP-GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQ 105 (204)
Q Consensus 28 ~~~~-~~~~~~~~~~~~l~~~~~~-~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~ 105 (204)
+.+. .+......+.+.+...+.. +.++||++||+|.++..+++... +++++|.++.+++.+++++..++ .
T Consensus 182 ~sF~Q~N~~~~e~l~~~v~~~~~~~~~~vLDl~~G~G~~sl~la~~~~---~v~~vE~~~~ai~~a~~N~~~~~-----~ 253 (362)
T PRK05031 182 NSFTQPNAAVNEKMLEWALDATKGSKGDLLELYCGNGNFTLALARNFR---RVLATEISKPSVAAAQYNIAANG-----I 253 (362)
T ss_pred CCeeccCHHHHHHHHHHHHHHhhcCCCeEEEEeccccHHHHHHHhhCC---EEEEEECCHHHHHHHHHHHHHhC-----C
Confidence 3444 4555666676666654432 35799999999999998888753 89999999999999999988754 3
Q ss_pred cceEEEEecCCCCC---CC-------------CCCeeEEEECCCccchhHHHH-HhcCCCcEEEEEecCCCCcceEEEEe
Q psy10572 106 GRVQFVVWNGKHGY---ER-------------EAPYDIIHVSPSYFTIPQKLL-DQLVPGGRMVMPVGEPFKGQNLTIID 168 (204)
Q Consensus 106 ~~~~~~~~d~~~~~---~~-------------~~~~D~v~~~~~~~~~~~~~~-~~Lk~gG~l~~~~~~~~~~~~~~~~~ 168 (204)
.+++++.+|+.... .. ..+||+|+++++...+...+. .+.+++++++++|........+..+.
T Consensus 254 ~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G~~~~~l~~l~~~~~ivyvSC~p~tlarDl~~L~ 333 (362)
T PRK05031 254 DNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPRAGLDDETLKLVQAYERILYISCNPETLCENLETLS 333 (362)
T ss_pred CcEEEEECCHHHHHHHHhhcccccccccccccCCCCCEEEECCCCCCCcHHHHHHHHccCCEEEEEeCHHHHHHHHHHHc
Confidence 58999999975321 10 125899999999876655554 33467899999887754333233332
Q ss_pred ecCCceEEEeeeeeeeeeeeccc
Q psy10572 169 KLADGYTIVTTVVRGVRTNPLYR 191 (204)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~pl~~ 191 (204)
+ .+++ ..+..+..+|.+.
T Consensus 334 ~----gY~l-~~v~~~DmFPqT~ 351 (362)
T PRK05031 334 Q----THKV-ERFALFDQFPYTH 351 (362)
T ss_pred C----CcEE-EEEEEcccCCCCC
Confidence 1 3666 6777777777764
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.4e-11 Score=90.68 Aligned_cols=102 Identities=18% Similarity=0.203 Sum_probs=87.0
Q ss_pred CEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCC---CCCCCCCeeEE
Q psy10572 52 ARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKH---GYEREAPYDII 128 (204)
Q Consensus 52 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~~D~v 128 (204)
..+||||||.|.+...+|+.. |+..++|||+....+..+...+...+ .+|+.+++.|+.. ...++++.|-|
T Consensus 50 pi~lEIGfG~G~~l~~~A~~n-P~~nfiGiEi~~~~v~~~l~k~~~~~-----l~Nlri~~~DA~~~l~~~~~~~sl~~I 123 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKN-PEKNFLGIEIRVPGVAKALKKIKELG-----LKNLRLLCGDAVEVLDYLIPDGSLDKI 123 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHC-CCCCEEEEEEehHHHHHHHHHHHHcC-----CCcEEEEcCCHHHHHHhcCCCCCeeEE
Confidence 589999999999999999998 88899999999999999998887743 4599999999763 34566699999
Q ss_pred EECCCccc--------------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 129 HVSPSYFT--------------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 129 ~~~~~~~~--------------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
+++.+.+| +++.+.+.|+|||.|.+.+-...
T Consensus 124 ~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~ 168 (227)
T COG0220 124 YINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEE 168 (227)
T ss_pred EEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHH
Confidence 99988865 56899999999999999775443
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.28 E-value=9.1e-11 Score=88.38 Aligned_cols=103 Identities=19% Similarity=0.093 Sum_probs=74.0
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcC-------ccccCccceEEEEecCCCCCC
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGN-------SELLDQGRVQFVVWNGKHGYE 120 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-------~~~~~~~~~~~~~~d~~~~~~ 120 (204)
+.++.+|||+|||.|..+.+++.+. .+|+|+|+|+.+++.+........ .+.....++++.++|+.+...
T Consensus 35 ~~~~~rvL~~gCG~G~da~~LA~~G---~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~ 111 (218)
T PRK13255 35 LPAGSRVLVPLCGKSLDMLWLAEQG---HEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTA 111 (218)
T ss_pred CCCCCeEEEeCCCChHhHHHHHhCC---CeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCc
Confidence 4567899999999999999999854 499999999999998643211100 000013578999999876543
Q ss_pred C-CCCeeEEEECCCccc--------hhHHHHHhcCCCcEEEE
Q psy10572 121 R-EAPYDIIHVSPSYFT--------IPQKLLDQLVPGGRMVM 153 (204)
Q Consensus 121 ~-~~~~D~v~~~~~~~~--------~~~~~~~~Lk~gG~l~~ 153 (204)
. ...||.|+-...+.+ ..+.+.++|+|||.+++
T Consensus 112 ~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 112 ADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred ccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 2 257999987665544 35788899999997554
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=99.28 E-value=1e-10 Score=97.01 Aligned_cols=127 Identities=16% Similarity=0.165 Sum_probs=95.9
Q ss_pred cccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccce
Q psy10572 29 ADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRV 108 (204)
Q Consensus 29 ~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~ 108 (204)
..+.+..........+...+.++.+|||+|||+|.-+..++...+..+.++++|+++..++..++++...+ ..++
T Consensus 92 ~~yvQd~sS~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G-----~~nv 166 (470)
T PRK11933 92 LFYIQEASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCG-----VSNV 166 (470)
T ss_pred cEEEECHHHHHHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcC-----CCeE
Confidence 33334444444444452125788999999999999999999988666799999999999999999998843 5678
Q ss_pred EEEEecCCCCC-CCCCCeeEEEECCCccc----------------------------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 109 QFVVWNGKHGY-EREAPYDIIHVSPSYFT----------------------------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 109 ~~~~~d~~~~~-~~~~~~D~v~~~~~~~~----------------------------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
.+...|..... ...+.||.|++++++.. ++..+.+.|||||+|+.++++-.
T Consensus 167 ~v~~~D~~~~~~~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~ 246 (470)
T PRK11933 167 ALTHFDGRVFGAALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLN 246 (470)
T ss_pred EEEeCchhhhhhhchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCC
Confidence 88888865321 11256999999988742 34677799999999999998855
Q ss_pred C
Q psy10572 160 K 160 (204)
Q Consensus 160 ~ 160 (204)
.
T Consensus 247 ~ 247 (470)
T PRK11933 247 R 247 (470)
T ss_pred H
Confidence 3
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.6e-11 Score=90.05 Aligned_cols=101 Identities=21% Similarity=0.302 Sum_probs=78.7
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCC-CCCeeEE
Q psy10572 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYER-EAPYDII 128 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~v 128 (204)
++.+|||+|||+|.++..+++.. ..++++|+++.+++.++.++.... ..++.+...|..+.... .++||+|
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~~~D~i 116 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG---ANVTGIDASEENIEVAKLHAKKDP-----LLKIEYRCTSVEDLAEKGAKSFDVV 116 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHHcC-----CCceEEEeCCHHHhhcCCCCCccEE
Confidence 47799999999999999888754 379999999999999998876532 22578888876544322 3689999
Q ss_pred EECCCccc------hhHHHHHhcCCCcEEEEEecCC
Q psy10572 129 HVSPSYFT------IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 129 ~~~~~~~~------~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
+++..+++ +++.+.+.|+|||.+++..++.
T Consensus 117 ~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 152 (224)
T TIGR01983 117 TCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTINR 152 (224)
T ss_pred EehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 98765543 5688889999999999877543
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.4e-11 Score=93.58 Aligned_cols=107 Identities=17% Similarity=0.099 Sum_probs=78.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHh--hhcCccccCccceEEEEecCCCCC-CCCCCe
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNI--DKGNSELLDQGRVQFVVWNGKHGY-EREAPY 125 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~ 125 (204)
....+||++|||.|..+..+++.. +..+++++|+++.+++.|+... ..........++++++.+|+.... ...+.|
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~-~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y 227 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYE-TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY 227 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence 445699999999999988888864 4569999999999999999631 110000123578999999987532 224679
Q ss_pred eEEEECCCcc-----------chhHHHHHhcCCCcEEEEEec
Q psy10572 126 DIIHVSPSYF-----------TIPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 126 D~v~~~~~~~-----------~~~~~~~~~Lk~gG~l~~~~~ 156 (204)
|+|+++.+.+ .+.+.+.+.|+|||++++...
T Consensus 228 DVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 228 DVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred cEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 9999986432 145788999999999987644
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.27 E-value=9.8e-11 Score=76.99 Aligned_cols=95 Identities=26% Similarity=0.371 Sum_probs=75.0
Q ss_pred EEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCC-CCCCeeEEEEC
Q psy10572 53 RILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE-REAPYDIIHVS 131 (204)
Q Consensus 53 ~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~v~~~ 131 (204)
+|+|+|||+|..+..+++ . ...+++++|.++..++.+++..... ...++.++..|..+... ...++|+|+++
T Consensus 1 ~ildig~G~G~~~~~~~~-~-~~~~~~~~d~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~d~i~~~ 73 (107)
T cd02440 1 RVLDLGCGTGALALALAS-G-PGARVTGVDISPVALELARKAAAAL-----LADNVEVLKGDAEELPPEADESFDVIISD 73 (107)
T ss_pred CeEEEcCCccHHHHHHhc-C-CCCEEEEEeCCHHHHHHHHHHHhcc-----cccceEEEEcChhhhccccCCceEEEEEc
Confidence 489999999999988888 3 4569999999999999888533321 23578889988776543 45689999999
Q ss_pred CCccc-------hhHHHHHhcCCCcEEEEE
Q psy10572 132 PSYFT-------IPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 132 ~~~~~-------~~~~~~~~Lk~gG~l~~~ 154 (204)
.++.. +++.+.+.|+++|.+++.
T Consensus 74 ~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 74 PPLHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred cceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 88754 457888999999999886
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=99.27 E-value=1e-10 Score=92.31 Aligned_cols=106 Identities=21% Similarity=0.191 Sum_probs=81.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC--CCCCCee
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY--EREAPYD 126 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D 126 (204)
..+.+||+||||.|..+..++++. +..+++.+|+++.+++.+++.+..... ....++++++.+|+.... .+.++||
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~-~v~~V~~VEiD~~Vi~~ar~~f~~~~~-~~~dpRv~vi~~Da~~~l~~~~~~~yD 167 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHS-SVEQIDICEIDKMVIDVSKKFFPDLAV-GFDDPRVNLHIGDGVEFLKNAPEGTYD 167 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhhhhhcc-ccCCCceEEEEChHHHHHhhccCCCCC
Confidence 556799999999999999998873 345899999999999999998754210 123568999999975332 2246799
Q ss_pred EEEECCCcc----------chhHHHHHhcCCCcEEEEEec
Q psy10572 127 IIHVSPSYF----------TIPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 127 ~v~~~~~~~----------~~~~~~~~~Lk~gG~l~~~~~ 156 (204)
+|+++...+ .+.+.+.+.|+|||+++....
T Consensus 168 vIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~ 207 (308)
T PLN02366 168 AIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAE 207 (308)
T ss_pred EEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcC
Confidence 999986542 245788999999999987443
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.8e-11 Score=88.54 Aligned_cols=97 Identities=24% Similarity=0.328 Sum_probs=71.1
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC--CCCCCC
Q psy10572 47 KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG--YEREAP 124 (204)
Q Consensus 47 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~ 124 (204)
.++++.+|||+|||+|.++..+++.. ...++|+|+++.+++.++.. +++++.+|+... ..++++
T Consensus 10 ~i~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~~------------~~~~~~~d~~~~l~~~~~~s 75 (194)
T TIGR02081 10 LIPPGSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVAR------------GVNVIQGDLDEGLEAFPDKS 75 (194)
T ss_pred hcCCCCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHHc------------CCeEEEEEhhhcccccCCCC
Confidence 35677899999999999998887653 34789999999999888542 467778886542 234578
Q ss_pred eeEEEECCCccchh---HHHHHhcCCCcEEEEEecC
Q psy10572 125 YDIIHVSPSYFTIP---QKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 125 ~D~v~~~~~~~~~~---~~~~~~Lk~gG~l~~~~~~ 157 (204)
||+|+++..++++. ..+...+++++.+++++++
T Consensus 76 fD~Vi~~~~l~~~~d~~~~l~e~~r~~~~~ii~~p~ 111 (194)
T TIGR02081 76 FDYVILSQTLQATRNPEEILDEMLRVGRHAIVSFPN 111 (194)
T ss_pred cCEEEEhhHhHcCcCHHHHHHHHHHhCCeEEEEcCC
Confidence 99999998876642 3444556667777776554
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=99.26 E-value=8e-10 Score=81.53 Aligned_cols=140 Identities=14% Similarity=0.124 Sum_probs=94.9
Q ss_pred ccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceE
Q psy10572 30 DISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQ 109 (204)
Q Consensus 30 ~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~ 109 (204)
..+...+...+...+.. .-++.++||++||+|.++..++.+.. ..++++|.++.+++.++++++.+.. ..+++
T Consensus 30 rpt~~~vrea~f~~l~~-~~~g~~vLDLfaGsG~lglea~srga--~~v~~vE~~~~a~~~~~~N~~~~~~----~~~~~ 102 (189)
T TIGR00095 30 RPTTRVVRELFFNILRP-EIQGAHLLDVFAGSGLLGEEALSRGA--KVAFLEEDDRKANQTLKENLALLKS----GEQAE 102 (189)
T ss_pred CCchHHHHHHHHHHHHH-hcCCCEEEEecCCCcHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHhCC----cccEE
Confidence 33444455555555542 24578999999999999999999752 3899999999999999999987541 23688
Q ss_pred EEEecCCCCC---CC-CCCeeEEEECCCccc-----hhHHHH--HhcCCCcEEEEEecCCCCc----ceEEEEeecCCce
Q psy10572 110 FVVWNGKHGY---ER-EAPYDIIHVSPSYFT-----IPQKLL--DQLVPGGRMVMPVGEPFKG----QNLTIIDKLADGY 174 (204)
Q Consensus 110 ~~~~d~~~~~---~~-~~~~D~v~~~~~~~~-----~~~~~~--~~Lk~gG~l~~~~~~~~~~----~~~~~~~~~~~~~ 174 (204)
++.+|..... .. ...+|+|+.++++.. +++.+. .+|+++|.+++........ ..+..+....+|.
T Consensus 103 ~~~~D~~~~l~~~~~~~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E~~~~~~~~~~~~~~~~~~~r~yG~ 182 (189)
T TIGR00095 103 VVRNSALRALKFLAKKPTFDNVIYLDPPFFNGALQALLELCENNWILEDTVLIVVEEDREPELPPVEAWLSLKRQKKGGV 182 (189)
T ss_pred EEehhHHHHHHHhhccCCCceEEEECcCCCCCcHHHHHHHHHHCCCCCCCeEEEEEecCCCCCCCCcCCeEEEEEeecCc
Confidence 9999974321 11 224899999998854 222332 4689999999987654321 1244455555554
Q ss_pred EE
Q psy10572 175 TI 176 (204)
Q Consensus 175 ~~ 176 (204)
..
T Consensus 183 t~ 184 (189)
T TIGR00095 183 SY 184 (189)
T ss_pred EE
Confidence 43
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=99.26 E-value=6e-11 Score=92.42 Aligned_cols=107 Identities=21% Similarity=0.175 Sum_probs=79.3
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC-CCCCCeeEE
Q psy10572 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-EREAPYDII 128 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v 128 (204)
.+.+||++|||+|..+..+++.. +..+++++|+++.+++.+++.+.... .....++++++.+|..... ...++||+|
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~-~~~~~~~v~i~~~D~~~~l~~~~~~yDvI 149 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLA-GSYDDPRVDLQIDDGFKFLADTENTFDVI 149 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhc-ccccCCceEEEECchHHHHHhCCCCccEE
Confidence 34599999999999998888765 34589999999999999999875421 0122457888888865422 113689999
Q ss_pred EECCCcc----------chhHHHHHhcCCCcEEEEEecCC
Q psy10572 129 HVSPSYF----------TIPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 129 ~~~~~~~----------~~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
+++...+ .+.+.+.+.|+|||++++...+.
T Consensus 150 i~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~~ 189 (270)
T TIGR00417 150 IVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSESP 189 (270)
T ss_pred EEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCCCc
Confidence 9976522 24478889999999999875443
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.7e-11 Score=97.64 Aligned_cols=147 Identities=16% Similarity=0.125 Sum_probs=102.3
Q ss_pred CChHHHHHHHHHHhccCC-CCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEE
Q psy10572 32 SSPHIHAQMLELLKDKIK-PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQF 110 (204)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~-~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 110 (204)
.+......+++.+...+. .+.+|||++||+|.++..+++... +++|+|.++.+++.|++++..++ ..++++
T Consensus 178 ~N~~~~~~l~~~v~~~~~~~~~~vlDl~~G~G~~sl~la~~~~---~v~~vE~~~~av~~a~~n~~~~~-----~~~v~~ 249 (353)
T TIGR02143 178 PNAAVNIKMLEWACEVTQGSKGDLLELYCGNGNFSLALAQNFR---RVLATEIAKPSVNAAQYNIAANN-----IDNVQI 249 (353)
T ss_pred CCHHHHHHHHHHHHHHhhcCCCcEEEEeccccHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcC-----CCcEEE
Confidence 445555666665554443 234799999999999999988763 89999999999999999998754 357999
Q ss_pred EEecCCCCCCC----------------CCCeeEEEECCCccchhHHH-HHhcCCCcEEEEEecCCCCcceEEEEeecCCc
Q psy10572 111 VVWNGKHGYER----------------EAPYDIIHVSPSYFTIPQKL-LDQLVPGGRMVMPVGEPFKGQNLTIIDKLADG 173 (204)
Q Consensus 111 ~~~d~~~~~~~----------------~~~~D~v~~~~~~~~~~~~~-~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~ 173 (204)
+.+|....... ...||+|+++++-..+...+ ..+.+|+++++++|.+......+..+. .+
T Consensus 250 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G~~~~~l~~l~~~~~ivYvsC~p~tlaRDl~~L~---~~ 326 (353)
T TIGR02143 250 IRMSAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRAGLDPDTCKLVQAYERILYISCNPETLKANLEQLS---ET 326 (353)
T ss_pred EEcCHHHHHHHHhhccccccccccccccCCCCEEEECCCCCCCcHHHHHHHHcCCcEEEEEcCHHHHHHHHHHHh---cC
Confidence 99997542210 12389999999976655444 344578999999887665333333332 12
Q ss_pred eEEEeeeeeeeeeeeccc
Q psy10572 174 YTIVTTVVRGVRTNPLYR 191 (204)
Q Consensus 174 ~~~~~~~~~~~~~~pl~~ 191 (204)
+++ ..+..+...|.+.
T Consensus 327 -Y~l-~~v~~~DmFP~T~ 342 (353)
T TIGR02143 327 -HRV-ERFALFDQFPYTH 342 (353)
T ss_pred -cEE-EEEEEcccCCCCC
Confidence 555 6667777777654
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.25 E-value=8.7e-11 Score=91.60 Aligned_cols=103 Identities=20% Similarity=0.196 Sum_probs=79.4
Q ss_pred ccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceE
Q psy10572 30 DISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQ 109 (204)
Q Consensus 30 ~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~ 109 (204)
++..+.+...+++.+. +.++.+|||+|||+|.++..+++.. + +++++|+++.+++.+++++.. ++++
T Consensus 24 fl~~~~i~~~i~~~l~--~~~~~~VLEiG~G~G~lt~~L~~~~-~--~v~avE~d~~~~~~~~~~~~~--------~~v~ 90 (272)
T PRK00274 24 FLIDENILDKIVDAAG--PQPGDNVLEIGPGLGALTEPLLERA-A--KVTAVEIDRDLAPILAETFAE--------DNLT 90 (272)
T ss_pred cCCCHHHHHHHHHhcC--CCCcCeEEEeCCCccHHHHHHHHhC-C--cEEEEECCHHHHHHHHHhhcc--------CceE
Confidence 4567777778888776 6788899999999999999999986 3 899999999999999886532 4799
Q ss_pred EEEecCCCCCCCCCCeeEEEECCCccchhHHHHHhc
Q psy10572 110 FVVWNGKHGYEREAPYDIIHVSPSYFTIPQKLLDQL 145 (204)
Q Consensus 110 ~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~L 145 (204)
++++|+.....+.-.++.|++|.++.-...-+.+.|
T Consensus 91 ~i~~D~~~~~~~~~~~~~vv~NlPY~iss~ii~~~l 126 (272)
T PRK00274 91 IIEGDALKVDLSELQPLKVVANLPYNITTPLLFHLL 126 (272)
T ss_pred EEEChhhcCCHHHcCcceEEEeCCccchHHHHHHHH
Confidence 999998765443222589999998865333333444
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.1e-10 Score=88.85 Aligned_cols=93 Identities=23% Similarity=0.252 Sum_probs=77.9
Q ss_pred ccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceE
Q psy10572 30 DISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQ 109 (204)
Q Consensus 30 ~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~ 109 (204)
++..+.+...+++.+. +.++.+|||+|||+|.++..+++.. .+++++|+++.+++.+++++.. .++++
T Consensus 11 fl~d~~~~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~L~~~~---~~v~~vEid~~~~~~l~~~~~~-------~~~v~ 78 (258)
T PRK14896 11 FLIDDRVVDRIVEYAE--DTDGDPVLEIGPGKGALTDELAKRA---KKVYAIELDPRLAEFLRDDEIA-------AGNVE 78 (258)
T ss_pred ccCCHHHHHHHHHhcC--CCCcCeEEEEeCccCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHhcc-------CCCEE
Confidence 4467888888888776 6788999999999999999999974 3899999999999999988753 25899
Q ss_pred EEEecCCCCCCCCCCeeEEEECCCccc
Q psy10572 110 FVVWNGKHGYEREAPYDIIHVSPSYFT 136 (204)
Q Consensus 110 ~~~~d~~~~~~~~~~~D~v~~~~~~~~ 136 (204)
++++|+.....+ .+|.|++|.++..
T Consensus 79 ii~~D~~~~~~~--~~d~Vv~NlPy~i 103 (258)
T PRK14896 79 IIEGDALKVDLP--EFNKVVSNLPYQI 103 (258)
T ss_pred EEEeccccCCch--hceEEEEcCCccc
Confidence 999998775443 4899999998864
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.8e-10 Score=90.03 Aligned_cols=98 Identities=16% Similarity=0.192 Sum_probs=69.2
Q ss_pred HHHHHHHHHHhcc-CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe
Q psy10572 35 HIHAQMLELLKDK-IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW 113 (204)
Q Consensus 35 ~~~~~~~~~l~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 113 (204)
.....+++.+... ..++.+|||+|||+|.++..+++.. .+|+|+|+|+.+++.++++............++.+...
T Consensus 128 ~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g---~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~ 204 (315)
T PLN02585 128 QTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEG---AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEAN 204 (315)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEc
Confidence 3445555555421 1256799999999999999999853 49999999999999999987652100001235778888
Q ss_pred cCCCCCCCCCCeeEEEECCCccchh
Q psy10572 114 NGKHGYEREAPYDIIHVSPSYFTIP 138 (204)
Q Consensus 114 d~~~~~~~~~~~D~v~~~~~~~~~~ 138 (204)
|+... .++||+|++...+.++.
T Consensus 205 Dl~~l---~~~fD~Vv~~~vL~H~p 226 (315)
T PLN02585 205 DLESL---SGKYDTVTCLDVLIHYP 226 (315)
T ss_pred chhhc---CCCcCEEEEcCEEEecC
Confidence 85432 36799999988776543
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.3e-10 Score=82.34 Aligned_cols=99 Identities=24% Similarity=0.306 Sum_probs=76.9
Q ss_pred cCCcccCChHHHHHHHHHHh-ccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccC
Q psy10572 26 GYGADISSPHIHAQMLELLK-DKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLD 104 (204)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~l~-~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~ 104 (204)
+..+..+...+.+.++.... .-.-.+..|+|+|||+|.+++.++.... ..|+++|+++.+++.+++|+...
T Consensus 20 ~LEQY~Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~lGa--~~V~~vdiD~~a~ei~r~N~~~l------ 91 (198)
T COG2263 20 GLEQYRTPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLGA--SRVLAVDIDPEALEIARANAEEL------ 91 (198)
T ss_pred cceecCCChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhcCC--cEEEEEecCHHHHHHHHHHHHhh------
Confidence 33455666666666666554 1124566899999999999998887652 49999999999999999999872
Q ss_pred ccceEEEEecCCCCCCCCCCeeEEEECCCcc
Q psy10572 105 QGRVQFVVWNGKHGYEREAPYDIIHVSPSYF 135 (204)
Q Consensus 105 ~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~ 135 (204)
..++.++..|..... .++|.++.|+++-
T Consensus 92 ~g~v~f~~~dv~~~~---~~~dtvimNPPFG 119 (198)
T COG2263 92 LGDVEFVVADVSDFR---GKFDTVIMNPPFG 119 (198)
T ss_pred CCceEEEEcchhhcC---CccceEEECCCCc
Confidence 468999999977654 5699999999984
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.7e-10 Score=84.53 Aligned_cols=145 Identities=19% Similarity=0.219 Sum_probs=98.2
Q ss_pred CCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCcc
Q psy10572 27 YGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQG 106 (204)
Q Consensus 27 ~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~ 106 (204)
.....+...+.+.+...+....-++.++||+.||+|.++.+.+.+.. .+|+.||.++..+...++|++..+ ...
T Consensus 19 ~~~RPT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA--~~v~fVE~~~~a~~~i~~N~~~l~----~~~ 92 (183)
T PF03602_consen 19 DNTRPTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGA--KSVVFVEKNRKAIKIIKKNLEKLG----LED 92 (183)
T ss_dssp -TS-SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHT-----GG
T ss_pred CCcCCCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCC--CeEEEEECCHHHHHHHHHHHHHhC----CCc
Confidence 45566777788888888874324688999999999999999988753 499999999999999999998743 123
Q ss_pred ceEEEEecCCCCC----CCCCCeeEEEECCCccch------hHHHH--HhcCCCcEEEEEecCCCCc----ceEEEEeec
Q psy10572 107 RVQFVVWNGKHGY----EREAPYDIIHVSPSYFTI------PQKLL--DQLVPGGRMVMPVGEPFKG----QNLTIIDKL 170 (204)
Q Consensus 107 ~~~~~~~d~~~~~----~~~~~~D~v~~~~~~~~~------~~~~~--~~Lk~gG~l~~~~~~~~~~----~~~~~~~~~ 170 (204)
++.++..|..... ....+||+|++++|+..- ++.+. .+|+++|.+++........ ..+..+...
T Consensus 93 ~~~v~~~d~~~~l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~~~~~~~~~~~~~~~~r 172 (183)
T PF03602_consen 93 KIRVIKGDAFKFLLKLAKKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEHSKKEDLPESPGNWELIKER 172 (183)
T ss_dssp GEEEEESSHHHHHHHHHHCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETTSSS-SEETTEEEEEEE
T ss_pred ceeeeccCHHHHHHhhcccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEecCCCCCccCCCCEEEEEEe
Confidence 5888888854322 134789999999998652 23443 6789999999998766321 235555555
Q ss_pred CCceEEE
Q psy10572 171 ADGYTIV 177 (204)
Q Consensus 171 ~~~~~~~ 177 (204)
.+|...+
T Consensus 173 ~yG~t~~ 179 (183)
T PF03602_consen 173 KYGDTKL 179 (183)
T ss_dssp EETTEEE
T ss_pred cCCCEEE
Confidence 5554433
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.1e-10 Score=94.15 Aligned_cols=106 Identities=25% Similarity=0.321 Sum_probs=87.6
Q ss_pred CCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC----CCCCCee
Q psy10572 51 GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY----EREAPYD 126 (204)
Q Consensus 51 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D 126 (204)
+++|||+.|-||.++..++.... .++++||.|...++.|++|++.|+ +....+.++++|+.+.. ....+||
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA--~~vt~VD~S~~al~~a~~N~~LNg---~~~~~~~~i~~Dvf~~l~~~~~~g~~fD 292 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGA--SEVTSVDLSKRALEWARENAELNG---LDGDRHRFIVGDVFKWLRKAERRGEKFD 292 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCC--CceEEEeccHHHHHHHHHHHHhcC---CCccceeeehhhHHHHHHHHHhcCCccc
Confidence 99999999999999999988542 399999999999999999999877 34567899999987533 2235899
Q ss_pred EEEECCCccc---------------hhHHHHHhcCCCcEEEEEecCCCCc
Q psy10572 127 IIHVSPSYFT---------------IPQKLLDQLVPGGRMVMPVGEPFKG 161 (204)
Q Consensus 127 ~v~~~~~~~~---------------~~~~~~~~Lk~gG~l~~~~~~~~~~ 161 (204)
+|++++|... +...+.++|+|||+++++.++....
T Consensus 293 lIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~ 342 (393)
T COG1092 293 LIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFS 342 (393)
T ss_pred EEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccC
Confidence 9999988632 5578889999999999988766533
|
|
| >KOG1541|consensus | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.7e-10 Score=84.64 Aligned_cols=115 Identities=21% Similarity=0.204 Sum_probs=83.2
Q ss_pred ChHHHHHHHHHHhccCCC--CCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEE
Q psy10572 33 SPHIHAQMLELLKDKIKP--GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQF 110 (204)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~--~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 110 (204)
+..+.+..++.+. ++. ..-|||||||+|..+..+.... ..++|+|+|+.|++.|.+.--. -.+
T Consensus 33 Q~em~eRaLELLa--lp~~~~~~iLDIGCGsGLSg~vL~~~G---h~wiGvDiSpsML~~a~~~e~e----------gdl 97 (270)
T KOG1541|consen 33 QAEMAERALELLA--LPGPKSGLILDIGCGSGLSGSVLSDSG---HQWIGVDISPSMLEQAVERELE----------GDL 97 (270)
T ss_pred hHHHHHHHHHHhh--CCCCCCcEEEEeccCCCcchheeccCC---ceEEeecCCHHHHHHHHHhhhh----------cCe
Confidence 4445666666666 444 5689999999999998887743 4899999999999999863211 235
Q ss_pred EEecCC-CCCCCCCCeeEEEECCCccc-----------------hhHHHHHhcCCCcEEEEEecCCCCcc
Q psy10572 111 VVWNGK-HGYEREAPYDIIHVSPSYFT-----------------IPQKLLDQLVPGGRMVMPVGEPFKGQ 162 (204)
Q Consensus 111 ~~~d~~-~~~~~~~~~D~v~~~~~~~~-----------------~~~~~~~~Lk~gG~l~~~~~~~~~~~ 162 (204)
+.+|.- ..++..++||-+|+.....+ ++..++.+|++|++.++.+......+
T Consensus 98 il~DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q 167 (270)
T KOG1541|consen 98 ILCDMGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQ 167 (270)
T ss_pred eeeecCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHH
Confidence 566644 34567799999887655443 23568899999999999887665443
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.6e-10 Score=90.72 Aligned_cols=105 Identities=19% Similarity=0.275 Sum_probs=82.7
Q ss_pred ccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceE
Q psy10572 30 DISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQ 109 (204)
Q Consensus 30 ~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~ 109 (204)
++..+.+...+++.+. +.++..|||||||+|.++..+++.. .+++++|+++.+++.+++++...+ ..++++
T Consensus 18 FL~d~~i~~~Iv~~~~--~~~~~~VLEIG~G~G~LT~~Ll~~~---~~V~avEiD~~li~~l~~~~~~~~----~~~~v~ 88 (294)
T PTZ00338 18 ILKNPLVLDKIVEKAA--IKPTDTVLEIGPGTGNLTEKLLQLA---KKVIAIEIDPRMVAELKKRFQNSP----LASKLE 88 (294)
T ss_pred ccCCHHHHHHHHHhcC--CCCcCEEEEecCchHHHHHHHHHhC---CcEEEEECCHHHHHHHHHHHHhcC----CCCcEE
Confidence 3467788888888776 7788999999999999999998865 389999999999999999886532 135899
Q ss_pred EEEecCCCCCCCCCCeeEEEECCCccchhHHHHHhc
Q psy10572 110 FVVWNGKHGYEREAPYDIIHVSPSYFTIPQKLLDQL 145 (204)
Q Consensus 110 ~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~L 145 (204)
++++|+..... ..||.|++|.++......+.++|
T Consensus 89 ii~~Dal~~~~--~~~d~VvaNlPY~Istpil~~ll 122 (294)
T PTZ00338 89 VIEGDALKTEF--PYFDVCVANVPYQISSPLVFKLL 122 (294)
T ss_pred EEECCHhhhcc--cccCEEEecCCcccCcHHHHHHH
Confidence 99999876543 36899999999865433333333
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.6e-10 Score=97.63 Aligned_cols=109 Identities=21% Similarity=0.195 Sum_probs=80.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHh--hhcCccccCccceEEEEecCCCCC-CCCCCe
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNI--DKGNSELLDQGRVQFVVWNGKHGY-EREAPY 125 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~ 125 (204)
+++++|||+|||+|..+..+.++. +..+++++|+++.+++.++++. ..........++++++.+|..... ...++|
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~-~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYP-DVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCC-CcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 456799999999999999998753 3359999999999999999843 211100123468999999977532 123689
Q ss_pred eEEEECCCccc-----------hhHHHHHhcCCCcEEEEEecCC
Q psy10572 126 DIIHVSPSYFT-----------IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 126 D~v~~~~~~~~-----------~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
|+|+++.+.+. +.+.+.+.|+|||.+++...+.
T Consensus 375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~ 418 (521)
T PRK03612 375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSP 418 (521)
T ss_pred CEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCc
Confidence 99999865432 4578889999999999866433
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.2e-10 Score=87.53 Aligned_cols=106 Identities=20% Similarity=0.176 Sum_probs=83.7
Q ss_pred ccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceE
Q psy10572 30 DISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQ 109 (204)
Q Consensus 30 ~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~ 109 (204)
++..+.+...+++.+. ..++.+|||+|||+|.++..+++... .++++|+++.+++.++.++.. .++++
T Consensus 11 fl~d~~i~~~i~~~~~--~~~~~~VLEiG~G~G~lt~~L~~~~~---~v~~iE~d~~~~~~l~~~~~~-------~~~v~ 78 (253)
T TIGR00755 11 FLIDESVIQKIVEAAN--VLEGDVVLEIGPGLGALTEPLLKRAK---KVTAIEIDPRLAEILRKLLSL-------YERLE 78 (253)
T ss_pred cCCCHHHHHHHHHhcC--CCCcCEEEEeCCCCCHHHHHHHHhCC---cEEEEECCHHHHHHHHHHhCc-------CCcEE
Confidence 4467778888888776 67788999999999999999999863 799999999999999887643 25799
Q ss_pred EEEecCCCCCCCCCCee---EEEECCCccchhHHHHHhc-CCCc
Q psy10572 110 FVVWNGKHGYEREAPYD---IIHVSPSYFTIPQKLLDQL-VPGG 149 (204)
Q Consensus 110 ~~~~d~~~~~~~~~~~D---~v~~~~~~~~~~~~~~~~L-k~gG 149 (204)
++++|+.....+ .+| .|++|.+++.....+.+++ .++.
T Consensus 79 v~~~D~~~~~~~--~~d~~~~vvsNlPy~i~~~il~~ll~~~~~ 120 (253)
T TIGR00755 79 VIEGDALKVDLP--DFPKQLKVVSNLPYNISSPLIFKLLEKPKF 120 (253)
T ss_pred EEECchhcCChh--HcCCcceEEEcCChhhHHHHHHHHhccCCC
Confidence 999998765543 466 8999998876555556666 4443
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.4e-10 Score=85.46 Aligned_cols=78 Identities=22% Similarity=0.276 Sum_probs=61.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEE
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDII 128 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 128 (204)
.++.+|||+|||+|.++..+++.. ..++++|+++.+++.|+++....+ ...++.+..+|... ..++||+|
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~---~~v~~~D~s~~~i~~a~~~~~~~~----~~~~i~~~~~d~~~---~~~~fD~v 131 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRG---AKVVASDISPQMVEEARERAPEAG----LAGNITFEVGDLES---LLGRFDTV 131 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcC----CccCcEEEEcCchh---ccCCcCEE
Confidence 467899999999999999998764 379999999999999999886633 11478888888332 24679999
Q ss_pred EECCCccc
Q psy10572 129 HVSPSYFT 136 (204)
Q Consensus 129 ~~~~~~~~ 136 (204)
++...+++
T Consensus 132 ~~~~~l~~ 139 (230)
T PRK07580 132 VCLDVLIH 139 (230)
T ss_pred EEcchhhc
Confidence 99877644
|
|
| >KOG2899|consensus | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.9e-11 Score=87.30 Aligned_cols=115 Identities=24% Similarity=0.200 Sum_probs=77.5
Q ss_pred HHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCc----------------
Q psy10572 42 ELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQ---------------- 105 (204)
Q Consensus 42 ~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~---------------- 105 (204)
..+......+..+|||||.+|.++..+++.++ ...+.|+|+++.+++.|+++++.........
T Consensus 50 k~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~-~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is 128 (288)
T KOG2899|consen 50 KVLEKDWFEPKQALDIGCNSGFLTLSIAKDFG-PRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPIS 128 (288)
T ss_pred hhccccccCcceeEeccCCcchhHHHHHHhhc-cceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccc
Confidence 33333345677999999999999999999994 4589999999999999999975421000000
Q ss_pred --------------cceEE-------EEecCCCCCCCCCCeeEEEECCCccc------------hhHHHHHhcCCCcEEE
Q psy10572 106 --------------GRVQF-------VVWNGKHGYEREAPYDIIHVSPSYFT------------IPQKLLDQLVPGGRMV 152 (204)
Q Consensus 106 --------------~~~~~-------~~~d~~~~~~~~~~~D~v~~~~~~~~------------~~~~~~~~Lk~gG~l~ 152 (204)
.++.+ ...|+. ......||+|+|.....| ++.++.++|.|||+|+
T Consensus 129 ~~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl--~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLv 206 (288)
T KOG2899|consen 129 QRNEADRAFTTDFPDNVWFQKENYVLESDDFL--DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILV 206 (288)
T ss_pred ccccccccccccCCcchhcccccEEEecchhh--hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEE
Confidence 01111 112222 123356999987654432 5689999999999999
Q ss_pred EEecCCC
Q psy10572 153 MPVGEPF 159 (204)
Q Consensus 153 ~~~~~~~ 159 (204)
+.=-++.
T Consensus 207 vEPQpWk 213 (288)
T KOG2899|consen 207 VEPQPWK 213 (288)
T ss_pred EcCCchH
Confidence 9544443
|
|
| >KOG3010|consensus | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.5e-11 Score=88.42 Aligned_cols=96 Identities=13% Similarity=0.054 Sum_probs=70.4
Q ss_pred CCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEEE
Q psy10572 51 GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHV 130 (204)
Q Consensus 51 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 130 (204)
...++|+|||+|..++.++.+.. +|+|+|+|+.+++.|++...... ......+...+..+....+++.|+|++
T Consensus 34 h~~a~DvG~G~Gqa~~~iae~~k---~VIatD~s~~mL~~a~k~~~~~y----~~t~~~ms~~~~v~L~g~e~SVDlI~~ 106 (261)
T KOG3010|consen 34 HRLAWDVGTGNGQAARGIAEHYK---EVIATDVSEAMLKVAKKHPPVTY----CHTPSTMSSDEMVDLLGGEESVDLITA 106 (261)
T ss_pred cceEEEeccCCCcchHHHHHhhh---hheeecCCHHHHHHhhcCCCccc----ccCCccccccccccccCCCcceeeehh
Confidence 34899999999988888898874 89999999999999987643211 111233333333344444689999999
Q ss_pred CCCccch-----hHHHHHhcCCCc-EEEE
Q psy10572 131 SPSYFTI-----PQKLLDQLVPGG-RMVM 153 (204)
Q Consensus 131 ~~~~~~~-----~~~~~~~Lk~gG-~l~~ 153 (204)
....|++ .+.+.++||++| .+.+
T Consensus 107 Aqa~HWFdle~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 107 AQAVHWFDLERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred hhhHHhhchHHHHHHHHHHcCCCCCEEEE
Confidence 9888873 478899999888 5544
|
|
| >KOG3191|consensus | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.4e-10 Score=80.72 Aligned_cols=113 Identities=22% Similarity=0.322 Sum_probs=87.5
Q ss_pred CCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEEE
Q psy10572 51 GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHV 130 (204)
Q Consensus 51 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 130 (204)
..-++|||||+|..+..+++...+...+.++|++|.+++...+.+..++ .++.+++.|+.....+ ++.|+++.
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~------~~~~~V~tdl~~~l~~-~~VDvLvf 116 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNR------VHIDVVRTDLLSGLRN-ESVDVLVF 116 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcC------CccceeehhHHhhhcc-CCccEEEE
Confidence 6689999999999999999998888899999999999999888887754 4688899998776554 89999999
Q ss_pred CCCccc---------------------------hhHHHHHhcCCCcEEEEEecCCCCc-ceEEEEeec
Q psy10572 131 SPSYFT---------------------------IPQKLLDQLVPGGRMVMPVGEPFKG-QNLTIIDKL 170 (204)
Q Consensus 131 ~~~~~~---------------------------~~~~~~~~Lk~gG~l~~~~~~~~~~-~~~~~~~~~ 170 (204)
|+++-- ++.++-..|.|.|.+++........ +.+..+++.
T Consensus 117 NPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~~~ 184 (209)
T KOG3191|consen 117 NPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILEKK 184 (209)
T ss_pred CCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHhhc
Confidence 988721 2234457788999999877544433 334444443
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.1e-10 Score=83.47 Aligned_cols=120 Identities=13% Similarity=0.079 Sum_probs=84.5
Q ss_pred CChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhh-------cCccccC
Q psy10572 32 SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK-------GNSELLD 104 (204)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~-------~~~~~~~ 104 (204)
.++.+...+.. +. +.++.+||..|||.|..+.+|+... .+|+|+|+|+.+++.+.+.... .......
T Consensus 28 pnp~L~~~~~~-l~--~~~~~rvLvPgCGkg~D~~~LA~~G---~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~ 101 (226)
T PRK13256 28 PNEFLVKHFSK-LN--INDSSVCLIPMCGCSIDMLFFLSKG---VKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYK 101 (226)
T ss_pred CCHHHHHHHHh-cC--CCCCCeEEEeCCCChHHHHHHHhCC---CcEEEEecCHHHHHHHHHHcCCCcceecccccceec
Confidence 44444444333 32 3567899999999999999999965 3899999999999998663110 0000011
Q ss_pred ccceEEEEecCCCCCCC---CCCeeEEEECCCccc--------hhHHHHHhcCCCcEEEEEecC
Q psy10572 105 QGRVQFVVWNGKHGYER---EAPYDIIHVSPSYFT--------IPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 105 ~~~~~~~~~d~~~~~~~---~~~~D~v~~~~~~~~--------~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
..++++.++|+.+...+ .+.||.|+-...+.. ..+.+.++|+|||.+++.+..
T Consensus 102 ~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~ 165 (226)
T PRK13256 102 GDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVME 165 (226)
T ss_pred cCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence 34799999998875421 257999987766644 447888999999999887653
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.16 E-value=7.4e-09 Score=75.10 Aligned_cols=156 Identities=19% Similarity=0.247 Sum_probs=110.8
Q ss_pred CccccccccccC--CcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHH
Q psy10572 16 EPYRIKSRQIGY--GADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIK 93 (204)
Q Consensus 16 ~~y~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~ 93 (204)
..|....++... +...+...+...+..++.+.--.+.++||+.+|+|.++.+.+.+.. ..++.||.+.......++
T Consensus 7 G~~kgr~L~~p~~~~~RPT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA--~~~~~vE~~~~a~~~l~~ 84 (187)
T COG0742 7 GKYKGRKLKTPDGPGTRPTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGA--ARVVFVEKDRKAVKILKE 84 (187)
T ss_pred ccccCCcccCCCCCCcCCCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCC--ceEEEEecCHHHHHHHHH
Confidence 345556565444 4556777777777777763114678999999999999999999853 489999999999999999
Q ss_pred HhhhcCccccCccceEEEEecCCCC---CCCCCCeeEEEECCCccc-hh--H----H--HHHhcCCCcEEEEEecCCC--
Q psy10572 94 NIDKGNSELLDQGRVQFVVWNGKHG---YEREAPYDIIHVSPSYFT-IP--Q----K--LLDQLVPGGRMVMPVGEPF-- 159 (204)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~~D~v~~~~~~~~-~~--~----~--~~~~Lk~gG~l~~~~~~~~-- 159 (204)
|++.-+ ...+.+++..|.... ....++||+|++++++.. +. . . -..+|+|+|.+++......
T Consensus 85 N~~~l~----~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~~~~ 160 (187)
T COG0742 85 NLKALG----LEGEARVLRNDALRALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDKDVEL 160 (187)
T ss_pred HHHHhC----CccceEEEeecHHHHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCCCcCc
Confidence 987622 135788888886622 222235999999999984 22 1 1 2366999999999887652
Q ss_pred --CcceEEEEeecCCceEEE
Q psy10572 160 --KGQNLTIIDKLADGYTIV 177 (204)
Q Consensus 160 --~~~~~~~~~~~~~~~~~~ 177 (204)
....+..+....+|...+
T Consensus 161 ~~~~~~~~~~r~k~yG~t~l 180 (187)
T COG0742 161 PELPANFELHREKKYGQTKL 180 (187)
T ss_pred cccCCCeEEEEEeecCCEEE
Confidence 234566666666665544
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.9e-10 Score=87.07 Aligned_cols=115 Identities=22% Similarity=0.301 Sum_probs=94.0
Q ss_pred CChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEE
Q psy10572 32 SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV 111 (204)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 111 (204)
..|.+...++.... +++|..|||--||||.+.+.+.... ++++|.|++..|+.-|+.|+...+ .....+.
T Consensus 181 ~~P~lAR~mVNLa~--v~~G~~vlDPFcGTGgiLiEagl~G---~~viG~Did~~mv~gak~Nl~~y~-----i~~~~~~ 250 (347)
T COG1041 181 MDPRLARAMVNLAR--VKRGELVLDPFCGTGGILIEAGLMG---ARVIGSDIDERMVRGAKINLEYYG-----IEDYPVL 250 (347)
T ss_pred cCHHHHHHHHHHhc--cccCCEeecCcCCccHHHHhhhhcC---ceEeecchHHHHHhhhhhhhhhhC-----cCceeEE
Confidence 45666667766665 8899999999999999999888754 499999999999999999998743 3456566
Q ss_pred Ee-cCCCCCCCCCCeeEEEECCCccc---------------hhHHHHHhcCCCcEEEEEec
Q psy10572 112 VW-NGKHGYEREAPYDIIHVSPSYFT---------------IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 112 ~~-d~~~~~~~~~~~D~v~~~~~~~~---------------~~~~~~~~Lk~gG~l~~~~~ 156 (204)
.. |+...++++.++|.|++++++-. .++.+.+.|++||++++..+
T Consensus 251 ~~~Da~~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 251 KVLDATNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred EecccccCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 65 87777677678999999988832 45788899999999999877
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=99.13 E-value=6.7e-10 Score=82.19 Aligned_cols=102 Identities=22% Similarity=0.289 Sum_probs=75.8
Q ss_pred hccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCC
Q psy10572 45 KDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAP 124 (204)
Q Consensus 45 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 124 (204)
.....++..|+|+.||.|.+++.+++.. ....|+++|++|.+++.++++++.++. ..++..+++|...... ...
T Consensus 96 ~~~v~~~e~VlD~faGIG~f~l~~ak~~-~~~~V~A~d~Np~a~~~L~~Ni~lNkv----~~~i~~~~~D~~~~~~-~~~ 169 (200)
T PF02475_consen 96 ANLVKPGEVVLDMFAGIGPFSLPIAKHG-KAKRVYAVDLNPDAVEYLKENIRLNKV----ENRIEVINGDAREFLP-EGK 169 (200)
T ss_dssp HTC--TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-----TTTEEEEES-GGG----TT-
T ss_pred HhcCCcceEEEEccCCccHHHHHHhhhc-CccEEEEecCCHHHHHHHHHHHHHcCC----CCeEEEEcCCHHHhcC-ccc
Confidence 3346889999999999999999999865 456899999999999999999998762 3568999999876654 678
Q ss_pred eeEEEECCCcc--chhHHHHHhcCCCcEEE
Q psy10572 125 YDIIHVSPSYF--TIPQKLLDQLVPGGRMV 152 (204)
Q Consensus 125 ~D~v~~~~~~~--~~~~~~~~~Lk~gG~l~ 152 (204)
+|.|+++.+.. .++..+..++++||++.
T Consensus 170 ~drvim~lp~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 170 FDRVIMNLPESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp EEEEEE--TSSGGGGHHHHHHHEEEEEEEE
T ss_pred cCEEEECChHHHHHHHHHHHHHhcCCcEEE
Confidence 99999998753 57889999999999874
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.13 E-value=2e-09 Score=86.86 Aligned_cols=132 Identities=21% Similarity=0.200 Sum_probs=99.8
Q ss_pred ccCCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCC-CceEEEEEcCHHHHHHHHHHhhhcCcccc
Q psy10572 25 IGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGP-EGRVYGVEHVMELAESSIKNIDKGNSELL 103 (204)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ 103 (204)
...|..+.+..........+. +.++.+|||+++++|.-|..++..... ...|+++|.++..++..+.+++. +
T Consensus 133 ~~~G~~~vQd~sS~l~a~~L~--p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~R-----l 205 (355)
T COG0144 133 FAEGLIYVQDEASQLPALVLD--PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKR-----L 205 (355)
T ss_pred hhceEEEEcCHHHHHHHHHcC--CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHH-----c
Confidence 334455555555545555555 788999999999999999999998754 34569999999999999999988 4
Q ss_pred CccceEEEEecCCCC---CCCCCCeeEEEECCCccc----------------------------hhHHHHHhcCCCcEEE
Q psy10572 104 DQGRVQFVVWNGKHG---YEREAPYDIIHVSPSYFT----------------------------IPQKLLDQLVPGGRMV 152 (204)
Q Consensus 104 ~~~~~~~~~~d~~~~---~~~~~~~D~v~~~~~~~~----------------------------~~~~~~~~Lk~gG~l~ 152 (204)
+..++.+...|.... .....+||.|++++++.. +++.+.+.|||||.|+
T Consensus 206 G~~nv~~~~~d~~~~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LV 285 (355)
T COG0144 206 GVRNVIVVNKDARRLAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLV 285 (355)
T ss_pred CCCceEEEecccccccccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEE
Confidence 466778888775522 222336999999988732 4467889999999999
Q ss_pred EEecCCCCcce
Q psy10572 153 MPVGEPFKGQN 163 (204)
Q Consensus 153 ~~~~~~~~~~~ 163 (204)
.++++-..++.
T Consensus 286 YSTCS~~~eEN 296 (355)
T COG0144 286 YSTCSLTPEEN 296 (355)
T ss_pred EEccCCchhcC
Confidence 99998876644
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.7e-10 Score=88.75 Aligned_cols=128 Identities=22% Similarity=0.280 Sum_probs=88.5
Q ss_pred cCCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHh------CCCceEEEEEcCHHHHHHHHHHhhhcC
Q psy10572 26 GYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMA------GPEGRVYGVEHVMELAESSIKNIDKGN 99 (204)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~------~~~~~v~~vD~~~~~~~~a~~~~~~~~ 99 (204)
..|.+.++..+...|+..+. ..++.+|+|.+||+|.+...+.+.. .....++|+|+++.++..++.++...+
T Consensus 24 ~~G~~~TP~~i~~l~~~~~~--~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~ 101 (311)
T PF02384_consen 24 KLGQFYTPREIVDLMVKLLN--PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHG 101 (311)
T ss_dssp SCGGC---HHHHHHHHHHHT--T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTT
T ss_pred ccceeehHHHHHHHHHhhhh--ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhc
Confidence 34678888899999998886 6778899999999999988887743 145699999999999999988875432
Q ss_pred ccccCccceEEEEecCCCCCCC--CCCeeEEEECCCccc---------------------------hhHHHHHhcCCCcE
Q psy10572 100 SELLDQGRVQFVVWNGKHGYER--EAPYDIIHVSPSYFT---------------------------IPQKLLDQLVPGGR 150 (204)
Q Consensus 100 ~~~~~~~~~~~~~~d~~~~~~~--~~~~D~v~~~~~~~~---------------------------~~~~~~~~Lk~gG~ 150 (204)
....+..+..+|....... ...||+|++|+|+.. ++..+.+.|++||+
T Consensus 102 ---~~~~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~ 178 (311)
T PF02384_consen 102 ---IDNSNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGR 178 (311)
T ss_dssp ---HHCBGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEE
T ss_pred ---cccccccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccc
Confidence 1223456788886644322 468999999988732 33678899999999
Q ss_pred EEEEecCC
Q psy10572 151 MVMPVGEP 158 (204)
Q Consensus 151 l~~~~~~~ 158 (204)
+.+.++..
T Consensus 179 ~~~Ilp~~ 186 (311)
T PF02384_consen 179 AAIILPNG 186 (311)
T ss_dssp EEEEEEHH
T ss_pred eeEEecch
Confidence 98888754
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.9e-09 Score=77.93 Aligned_cols=117 Identities=21% Similarity=0.324 Sum_probs=81.9
Q ss_pred CChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCce---------EEEEEcCHHHHHHHHHHhhhcCccc
Q psy10572 32 SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGR---------VYGVEHVMELAESSIKNIDKGNSEL 102 (204)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~---------v~~vD~~~~~~~~a~~~~~~~~~~~ 102 (204)
..+.+...|+.... .+++..|||..||+|.+.++.+... .... ++|.|+++.+++.++.|+...+
T Consensus 12 L~~~lA~~ll~la~--~~~~~~vlDP~CGsGtiliEaa~~~-~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag--- 85 (179)
T PF01170_consen 12 LRPTLAAALLNLAG--WRPGDVVLDPFCGSGTILIEAALMG-ANIPPLNDINELKIIGSDIDPKAVRGARENLKAAG--- 85 (179)
T ss_dssp S-HHHHHHHHHHTT----TTS-EEETT-TTSHHHHHHHHHH-TTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT---
T ss_pred CCHHHHHHHHHHhC--CCCCCEEeecCCCCCHHHHHHHHHh-hCcccccccccccEEecCCCHHHHHHHHHHHHhcc---
Confidence 35556666666555 6788999999999999999988876 3334 8999999999999999998744
Q ss_pred cCccceEEEEecCCCCCCCCCCeeEEEECCCccc--------------hhHHHHHhcCCCcEEEEEec
Q psy10572 103 LDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFT--------------IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 103 ~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~--------------~~~~~~~~Lk~gG~l~~~~~ 156 (204)
....+.+.+.|+.......+++|.|++|+++-. +.+.+.+.|++ ..+++...
T Consensus 86 -~~~~i~~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~~ 151 (179)
T PF01170_consen 86 -VEDYIDFIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTTS 151 (179)
T ss_dssp --CGGEEEEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEES
T ss_pred -cCCceEEEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEEC
Confidence 134688999998876655678999999999843 34677788888 44444333
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.1e-09 Score=74.89 Aligned_cols=131 Identities=17% Similarity=0.193 Sum_probs=100.4
Q ss_pred cccccccCCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcC
Q psy10572 20 IKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGN 99 (204)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~ 99 (204)
+.+..+| ....+++...+.|+..+. ...+.-|||+|.|+|.++..+.++.-+...++++|.|++......+..
T Consensus 21 ~~PrtVG-aI~PsSs~lA~~M~s~I~--pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~---- 93 (194)
T COG3963 21 DNPRTVG-AILPSSSILARKMASVID--PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY---- 93 (194)
T ss_pred cCCceee-eecCCcHHHHHHHHhccC--cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC----
Confidence 3344444 334467778888888887 678889999999999999999888656678999999999999888765
Q ss_pred ccccCccceEEEEecCCCCC-----CCCCCeeEEEECCCccc--------hhHHHHHhcCCCcEEEEEecCCCCcce
Q psy10572 100 SELLDQGRVQFVVWNGKHGY-----EREAPYDIIHVSPSYFT--------IPQKLLDQLVPGGRMVMPVGEPFKGQN 163 (204)
Q Consensus 100 ~~~~~~~~~~~~~~d~~~~~-----~~~~~~D~v~~~~~~~~--------~~~~~~~~Lk~gG~l~~~~~~~~~~~~ 163 (204)
+.+.++.+|..... .....||.|++.-++.. +++.+...|..||.++....+..+.-.
T Consensus 94 ------p~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYgp~s~v~ 164 (194)
T COG3963 94 ------PGVNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYGPLSPVL 164 (194)
T ss_pred ------CCccccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCCccc
Confidence 34668888876432 33456999999877754 558899999999999998887654433
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.8e-10 Score=94.61 Aligned_cols=140 Identities=22% Similarity=0.256 Sum_probs=104.2
Q ss_pred cccccCCccc-CChHHHHHHHHHHhccC--CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhc
Q psy10572 22 SRQIGYGADI-SSPHIHAQMLELLKDKI--KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKG 98 (204)
Q Consensus 22 ~~~~~~~~~~-~~~~~~~~~~~~l~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~ 98 (204)
.+.+..+.++ .++.+...|.+...+.+ .++.++||+-||.|.+++.+++... +|+|+|+++.+++.|+++++.+
T Consensus 262 ~~~~~~~sF~Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~---~V~gvEi~~~aV~~A~~NA~~n 338 (432)
T COG2265 262 SFQISPRSFFQVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVK---KVHGVEISPEAVEAAQENAAAN 338 (432)
T ss_pred EEEeCCCCceecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCC---EEEEEecCHHHHHHHHHHHHHc
Confidence 3344444444 56667777777666555 4667999999999999999998664 9999999999999999999986
Q ss_pred CccccCccceEEEEecCCCCCC---CCCCeeEEEECCCccchhH---HHHHhcCCCcEEEEEecCCCCcceEEEEee
Q psy10572 99 NSELLDQGRVQFVVWNGKHGYE---REAPYDIIHVSPSYFTIPQ---KLLDQLVPGGRMVMPVGEPFKGQNLTIIDK 169 (204)
Q Consensus 99 ~~~~~~~~~~~~~~~d~~~~~~---~~~~~D~v~~~~~~~~~~~---~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~ 169 (204)
+ ..|++|+.++...... ....+|.|+.+++-..... +....++|..+++++|.....-..+..+..
T Consensus 339 ~-----i~N~~f~~~~ae~~~~~~~~~~~~d~VvvDPPR~G~~~~~lk~l~~~~p~~IvYVSCNP~TlaRDl~~L~~ 410 (432)
T COG2265 339 G-----IDNVEFIAGDAEEFTPAWWEGYKPDVVVVDPPRAGADREVLKQLAKLKPKRIVYVSCNPATLARDLAILAS 410 (432)
T ss_pred C-----CCcEEEEeCCHHHHhhhccccCCCCEEEECCCCCCCCHHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHh
Confidence 5 5679999998764332 2357999999998766553 444557889999999987764444444444
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.1e-09 Score=89.02 Aligned_cols=115 Identities=16% Similarity=0.144 Sum_probs=85.7
Q ss_pred ChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEE
Q psy10572 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVV 112 (204)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 112 (204)
.+++...+++.+.. ..++.+|||++||+|..++.++... ....|+++|+++.+++.+++|++.++ ..++.+..
T Consensus 41 nrdl~~~v~~~~~~-~~~~~~vLDl~aGsG~~~l~~a~~~-~~~~V~a~Din~~Av~~a~~N~~~N~-----~~~~~v~~ 113 (382)
T PRK04338 41 NRDISVLVLRAFGP-KLPRESVLDALSASGIRGIRYALET-GVEKVTLNDINPDAVELIKKNLELNG-----LENEKVFN 113 (382)
T ss_pred hhhHHHHHHHHHHh-hcCCCEEEECCCcccHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhC-----CCceEEEh
Confidence 44455555555531 1135699999999999999998876 33489999999999999999998765 34567888
Q ss_pred ecCCCCCCCCCCeeEEEECCCcc--chhHHHHHhcCCCcEEEEE
Q psy10572 113 WNGKHGYEREAPYDIIHVSPSYF--TIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 113 ~d~~~~~~~~~~~D~v~~~~~~~--~~~~~~~~~Lk~gG~l~~~ 154 (204)
+|+.........||+|++++.-. .+++.+...++++|+++++
T Consensus 114 ~Da~~~l~~~~~fD~V~lDP~Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 114 KDANALLHEERKFDVVDIDPFGSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred hhHHHHHhhcCCCCEEEECCCCCcHHHHHHHHHHhcCCCEEEEE
Confidence 88754322135699999987532 3557778889999999998
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.1e-09 Score=86.71 Aligned_cols=83 Identities=17% Similarity=0.257 Sum_probs=62.8
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhc-CccccCccceEEEEe-c---CCCCC-CCCC
Q psy10572 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKG-NSELLDQGRVQFVVW-N---GKHGY-EREA 123 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~-d---~~~~~-~~~~ 123 (204)
++.++||||||+|.+...++... +..+++|+|+++.+++.|+.+++.+ . ...++.+... + +.... .+.+
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~-~~~~~~atDId~~Al~~A~~Nv~~Np~----l~~~I~~~~~~~~~~i~~~i~~~~~ 188 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHE-YGWRFVGSDIDPQALASAQAIISANPG----LNGAIRLRLQKDSKAIFKGIIHKNE 188 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHhccC----CcCcEEEEEccchhhhhhcccccCC
Confidence 45799999999998888777765 5679999999999999999999886 3 1246777542 2 12211 2346
Q ss_pred CeeEEEECCCccch
Q psy10572 124 PYDIIHVSPSYFTI 137 (204)
Q Consensus 124 ~~D~v~~~~~~~~~ 137 (204)
.||+|++|++++.-
T Consensus 189 ~fDlivcNPPf~~s 202 (321)
T PRK11727 189 RFDATLCNPPFHAS 202 (321)
T ss_pred ceEEEEeCCCCcCc
Confidence 89999999999753
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.7e-10 Score=87.27 Aligned_cols=108 Identities=20% Similarity=0.265 Sum_probs=79.2
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC---CCCCCe
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY---EREAPY 125 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~ 125 (204)
..+++|||+.|-+|.++..++... ..+|+.||.|..+++.+++|+..|+ +...+++++..|+.+.+ ...++|
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~gG--A~~v~~VD~S~~al~~a~~N~~lNg---~~~~~~~~~~~Dvf~~l~~~~~~~~f 196 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAGG--AKEVVSVDSSKRALEWAKENAALNG---LDLDRHRFIQGDVFKFLKRLKKGGRF 196 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHTT--ESEEEEEES-HHHHHHHHHHHHHTT----CCTCEEEEES-HHHHHHHHHHTT-E
T ss_pred cCCCceEEecCCCCHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHcC---CCccceEEEecCHHHHHHHHhcCCCC
Confidence 357899999999999999887743 3489999999999999999999876 33468999999976432 124689
Q ss_pred eEEEECCCcc------------chhHHHHHhcCCCcEEEEEecCCCCc
Q psy10572 126 DIIHVSPSYF------------TIPQKLLDQLVPGGRMVMPVGEPFKG 161 (204)
Q Consensus 126 D~v~~~~~~~------------~~~~~~~~~Lk~gG~l~~~~~~~~~~ 161 (204)
|+||+++|.. .+...+.++|+|||.|+++.++....
T Consensus 197 D~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~ 244 (286)
T PF10672_consen 197 DLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHHIS 244 (286)
T ss_dssp EEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TTS-
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcccC
Confidence 9999998863 25578889999999999888766533
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.2e-09 Score=82.29 Aligned_cols=116 Identities=24% Similarity=0.319 Sum_probs=80.5
Q ss_pred CChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhh-cCcc------ccC
Q psy10572 32 SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK-GNSE------LLD 104 (204)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~-~~~~------~~~ 104 (204)
.++.+...+-. +. ..++.+||..|||.|....+|+.+. .+|+|+|+|+.+++.+.+.... .... ...
T Consensus 22 ~~p~L~~~~~~-l~--~~~~~rvLvPgCG~g~D~~~La~~G---~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~ 95 (218)
T PF05724_consen 22 PNPALVEYLDS-LA--LKPGGRVLVPGCGKGYDMLWLAEQG---HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQ 95 (218)
T ss_dssp STHHHHHHHHH-HT--TSTSEEEEETTTTTSCHHHHHHHTT---EEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEET
T ss_pred CCHHHHHHHHh-cC--CCCCCeEEEeCCCChHHHHHHHHCC---CeEEEEecCHHHHHHHHHHhccCCCcccccceeeec
Confidence 34544444433 43 5777899999999999999999964 4999999999999998433211 0000 012
Q ss_pred ccceEEEEecCCCCCCCC-CCeeEEEECCCccc--------hhHHHHHhcCCCcEEEE
Q psy10572 105 QGRVQFVVWNGKHGYERE-APYDIIHVSPSYFT--------IPQKLLDQLVPGGRMVM 153 (204)
Q Consensus 105 ~~~~~~~~~d~~~~~~~~-~~~D~v~~~~~~~~--------~~~~~~~~Lk~gG~l~~ 153 (204)
..++++.++|+....... ++||+|+-...+.. ..+.+.++|+|||.+++
T Consensus 96 ~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lL 153 (218)
T PF05724_consen 96 AGRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLL 153 (218)
T ss_dssp TSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEE
T ss_pred CCceEEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 357899999988754332 57999988766643 45789999999999444
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.2e-09 Score=87.09 Aligned_cols=108 Identities=14% Similarity=0.142 Sum_probs=73.1
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccc----c-CccceEEEEecCCCC-----C
Q psy10572 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSEL----L-DQGRVQFVVWNGKHG-----Y 119 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~~d~~~~-----~ 119 (204)
++.+|||+|||.|+...-..... -..++|+|++...++.|+.+........ . ..-...++.+|.... .
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~--i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAK--IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhcC--CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 78899999999988665555542 2499999999999999999983311000 0 011456677776522 1
Q ss_pred CC-CCCeeEEEECCCccc----------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 120 ER-EAPYDIIHVSPSYFT----------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 120 ~~-~~~~D~v~~~~~~~~----------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
.+ ...||+|-+...+|. ++..+...|+|||+++.++++..
T Consensus 140 ~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~ 190 (331)
T PF03291_consen 140 PPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSD 190 (331)
T ss_dssp SSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HH
T ss_pred cccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHH
Confidence 22 258999999998876 45788899999999999998875
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >KOG2915|consensus | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.2e-09 Score=80.40 Aligned_cols=123 Identities=20% Similarity=0.204 Sum_probs=97.6
Q ss_pred ccCCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccC
Q psy10572 25 IGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLD 104 (204)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~ 104 (204)
.+++..|.-..-.+.++..+. ++|+..|+|-|+|+|.++.++++..+|.++++.+|......+.|.+.++..+ -
T Consensus 82 LphRTQI~Yt~Dia~I~~~L~--i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hg----i 155 (314)
T KOG2915|consen 82 LPHRTQILYTPDIAMILSMLE--IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHG----I 155 (314)
T ss_pred ccCcceEEecccHHHHHHHhc--CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhC----C
Confidence 445555543444556777777 8999999999999999999999999999999999999999999999998865 2
Q ss_pred ccceEEEEecCCCCCCC--CCCeeEEEECCCccchh-HHHHHhcCCCcEEEE
Q psy10572 105 QGRVQFVVWNGKHGYER--EAPYDIIHVSPSYFTIP-QKLLDQLVPGGRMVM 153 (204)
Q Consensus 105 ~~~~~~~~~d~~~~~~~--~~~~D~v~~~~~~~~~~-~~~~~~Lk~gG~l~~ 153 (204)
.+++++.+-|....-+. +..+|.|+.+.+.+|.. -.+.+.||.+|.-++
T Consensus 156 ~~~vt~~hrDVc~~GF~~ks~~aDaVFLDlPaPw~AiPha~~~lk~~g~r~c 207 (314)
T KOG2915|consen 156 GDNVTVTHRDVCGSGFLIKSLKADAVFLDLPAPWEAIPHAAKILKDEGGRLC 207 (314)
T ss_pred CcceEEEEeecccCCccccccccceEEEcCCChhhhhhhhHHHhhhcCceEE
Confidence 57899999998754332 46799999999888743 455568888875444
|
|
| >KOG3420|consensus | Back alignment and domain information |
|---|
Probab=99.08 E-value=5e-10 Score=76.96 Aligned_cols=103 Identities=18% Similarity=0.259 Sum_probs=84.0
Q ss_pred ccCCcccCChHHHHHHHHHHhccC--CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccc
Q psy10572 25 IGYGADISSPHIHAQMLELLKDKI--KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSEL 102 (204)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~ 102 (204)
++..+..+++++.+.|+..+..-. -.+++++|+|||.|-++...+... ...++|+|+++.+++.+++|.....
T Consensus 21 ~~LEQY~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~--~e~vlGfDIdpeALEIf~rNaeEfE--- 95 (185)
T KOG3420|consen 21 LLLEQYPTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPK--NESVLGFDIDPEALEIFTRNAEEFE--- 95 (185)
T ss_pred hhhhhCCCcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCC--CceEEeeecCHHHHHHHhhchHHhh---
Confidence 445677889999999999887543 367899999999999996555532 3489999999999999999987632
Q ss_pred cCccceEEEEecCCCCCCCCCCeeEEEECCCcc
Q psy10572 103 LDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYF 135 (204)
Q Consensus 103 ~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~ 135 (204)
-++.+.+.|+....+..+.||.++.|+++.
T Consensus 96 ---vqidlLqcdildle~~~g~fDtaviNppFG 125 (185)
T KOG3420|consen 96 ---VQIDLLQCDILDLELKGGIFDTAVINPPFG 125 (185)
T ss_pred ---hhhheeeeeccchhccCCeEeeEEecCCCC
Confidence 357889999888777778999999999884
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=8.9e-11 Score=86.67 Aligned_cols=116 Identities=22% Similarity=0.260 Sum_probs=81.4
Q ss_pred CChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEE
Q psy10572 32 SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV 111 (204)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 111 (204)
+-|...+.++..+. ..+=.++||+|||+|..+..+-.+.. +.+|+|+|..|++.|.++--- + ++.
T Consensus 109 ~vP~~l~emI~~~~--~g~F~~~lDLGCGTGL~G~~lR~~a~---~ltGvDiS~nMl~kA~eKg~Y--------D--~L~ 173 (287)
T COG4976 109 SVPELLAEMIGKAD--LGPFRRMLDLGCGTGLTGEALRDMAD---RLTGVDISENMLAKAHEKGLY--------D--TLY 173 (287)
T ss_pred ccHHHHHHHHHhcc--CCccceeeecccCcCcccHhHHHHHh---hccCCchhHHHHHHHHhccch--------H--HHH
Confidence 34455555555554 34457999999999999999988774 899999999999999876311 1 112
Q ss_pred EecCC--CCCCCCCCeeEEEECCCcc------chhHHHHHhcCCCcEEEEEecCCCCcc
Q psy10572 112 VWNGK--HGYEREAPYDIIHVSPSYF------TIPQKLLDQLVPGGRMVMPVGEPFKGQ 162 (204)
Q Consensus 112 ~~d~~--~~~~~~~~~D~v~~~~~~~------~~~~~~~~~Lk~gG~l~~~~~~~~~~~ 162 (204)
+++.. .......+||+|....++. .++-.+...|+|||.+.+++-......
T Consensus 174 ~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~ 232 (287)
T COG4976 174 VAEAVLFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDG 232 (287)
T ss_pred HHHHHHHhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCC
Confidence 22222 1112346799998766553 356778899999999999987666554
|
|
| >KOG2361|consensus | Back alignment and domain information |
|---|
Probab=99.05 E-value=7e-10 Score=82.58 Aligned_cols=147 Identities=19% Similarity=0.173 Sum_probs=98.5
Q ss_pred CCccccccccccCCcccCChHHHHHHHHHHhccC-CCCCEEEEEcCCCcHHHHHHHHHhC-CCceEEEEEcCHHHHHHHH
Q psy10572 15 NEPYRIKSRQIGYGADISSPHIHAQMLELLKDKI-KPGARILDIGSGSGYLTACLAYMAG-PEGRVYGVEHVMELAESSI 92 (204)
Q Consensus 15 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~vD~~~~~~~~a~ 92 (204)
...|+|.-+......+...++....-...+.... +...+|||+|||.|...-.+.+-.+ +.-.+++.|.|+.+++..+
T Consensus 35 ~~k~wD~fy~~~~~rFfkdR~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk 114 (264)
T KOG2361|consen 35 ASKYWDTFYKIHENRFFKDRNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVK 114 (264)
T ss_pred hhhhhhhhhhhccccccchhHHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHH
Confidence 4556777777777777655555444444443211 2223899999999999888888652 2268999999999999998
Q ss_pred HHhhhcCccccCccceEEEEecCC----CCCCCCCCeeEEEECCCccc--------hhHHHHHhcCCCcEEEEEecCCCC
Q psy10572 93 KNIDKGNSELLDQGRVQFVVWNGK----HGYEREAPYDIIHVSPSYFT--------IPQKLLDQLVPGGRMVMPVGEPFK 160 (204)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~d~~----~~~~~~~~~D~v~~~~~~~~--------~~~~~~~~Lk~gG~l~~~~~~~~~ 160 (204)
++..-+. .++.....|+. ....+.+++|+|++...+.. .++.+.++|||||.+++.-++...
T Consensus 115 ~~~~~~e------~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~D 188 (264)
T KOG2361|consen 115 KSSGYDE------SRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYD 188 (264)
T ss_pred hccccch------hhhcccceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccch
Confidence 8764422 23443444433 23345688999977665543 558899999999999998877765
Q ss_pred cceEEEE
Q psy10572 161 GQNLTII 167 (204)
Q Consensus 161 ~~~~~~~ 167 (204)
...++..
T Consensus 189 laqlRF~ 195 (264)
T KOG2361|consen 189 LAQLRFK 195 (264)
T ss_pred HHHHhcc
Confidence 5444433
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=99.05 E-value=4e-09 Score=84.15 Aligned_cols=107 Identities=15% Similarity=0.228 Sum_probs=80.5
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC-CCCCCeeE
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-EREAPYDI 127 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~ 127 (204)
....+||.+|+|.|..+..+.+.. +..+++.+|+++.+++.+++.+..+.. ....++++++.+|+.... ...++||+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~~~~-~~~dprv~v~~~Da~~~L~~~~~~yDv 179 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTVNRE-AFCDKRLELIINDARAELEKRDEKFDV 179 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhcccccc-cccCCceEEEEChhHHHHhhCCCCccE
Confidence 345699999999999999988865 445899999999999999998754211 123578999999987543 22367999
Q ss_pred EEECCCcc------------chhH-HHHHhcCCCcEEEEEecC
Q psy10572 128 IHVSPSYF------------TIPQ-KLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 128 v~~~~~~~------------~~~~-~~~~~Lk~gG~l~~~~~~ 157 (204)
|+++...+ .+.+ .+.+.|+|||++++...+
T Consensus 180 Ii~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s 222 (336)
T PLN02823 180 IIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAGP 222 (336)
T ss_pred EEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEeccC
Confidence 99984321 1345 788999999999876543
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.2e-09 Score=77.29 Aligned_cols=108 Identities=22% Similarity=0.318 Sum_probs=70.5
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC----CCC
Q psy10572 47 KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY----ERE 122 (204)
Q Consensus 47 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~ 122 (204)
...++.+|||+|||+|..++.++... ...+|+..|.++ .++..+.+++.+.. ....++.+...++.... .+.
T Consensus 42 ~~~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N~~--~~~~~v~v~~L~Wg~~~~~~~~~~ 117 (173)
T PF10294_consen 42 ELFRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELNGS--LLDGRVSVRPLDWGDELDSDLLEP 117 (173)
T ss_dssp GGTTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT----------EEEE--TTS-HHHHHHS-
T ss_pred hhcCCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhccc--cccccccCcEEEecCccccccccc
Confidence 35678899999999999999999985 456999999999 99999999987541 12357788888765422 234
Q ss_pred CCeeEEEECCCccc------hhHHHHHhcCCCcEEEEEecCC
Q psy10572 123 APYDIIHVSPSYFT------IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 123 ~~~D~v~~~~~~~~------~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
.+||+|+.....+. +.+.+.++|+++|.+++.....
T Consensus 118 ~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 118 HSFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred ccCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 68999998776643 5678889999999977766543
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >KOG1499|consensus | Back alignment and domain information |
|---|
Probab=99.05 E-value=9.9e-10 Score=86.14 Aligned_cols=98 Identities=19% Similarity=0.192 Sum_probs=75.2
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
+-.++.|||+|||+|.+++..++.+. .+|+++|-|. ..+.|++.+..++. ...++++.+.+.+...|.++.|+
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akAGA--~~V~aVe~S~-ia~~a~~iv~~N~~----~~ii~vi~gkvEdi~LP~eKVDi 130 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKAGA--RKVYAVEASS-IADFARKIVKDNGL----EDVITVIKGKVEDIELPVEKVDI 130 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHhCc--ceEEEEechH-HHHHHHHHHHhcCc----cceEEEeecceEEEecCccceeE
Confidence 46788999999999999999999863 5999999665 45999998888652 34699999988766566688999
Q ss_pred EEECCCccchh-----H----HHHHhcCCCcEEE
Q psy10572 128 IHVSPSYFTIP-----Q----KLLDQLVPGGRMV 152 (204)
Q Consensus 128 v~~~~~~~~~~-----~----~~~~~Lk~gG~l~ 152 (204)
|++--.-..++ + .--+.|+|||.++
T Consensus 131 IvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 131 IVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred EeehhhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 99865443322 2 2227899999884
|
|
| >KOG1663|consensus | Back alignment and domain information |
|---|
Probab=99.04 E-value=6.3e-09 Score=77.13 Aligned_cols=121 Identities=19% Similarity=0.309 Sum_probs=93.8
Q ss_pred Cccc-CChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCcc
Q psy10572 28 GADI-SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQG 106 (204)
Q Consensus 28 ~~~~-~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~ 106 (204)
+..+ ..++....+.-.+. +..+++.||+|.=+|+.+..++..++++++++++|+++...+.+.+..+..+ ...
T Consensus 52 ~~~m~v~~d~g~fl~~li~--~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~ag----v~~ 125 (237)
T KOG1663|consen 52 GSEMLVGPDKGQFLQMLIR--LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAG----VDH 125 (237)
T ss_pred ccceecChHHHHHHHHHHH--HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcc----ccc
Confidence 3344 44555544444444 4567799999999999999999999888999999999999999977776644 245
Q ss_pred ceEEEEecCCCCC------CCCCCeeEEEECCCccc---hhHHHHHhcCCCcEEEEE
Q psy10572 107 RVQFVVWNGKHGY------EREAPYDIIHVSPSYFT---IPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 107 ~~~~~~~d~~~~~------~~~~~~D~v~~~~~~~~---~~~~~~~~Lk~gG~l~~~ 154 (204)
.+++++++..+.. .+.++||.++.++.-.. ..+++.+++|+||.|++.
T Consensus 126 KI~~i~g~a~esLd~l~~~~~~~tfDfaFvDadK~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 126 KITFIEGPALESLDELLADGESGTFDFAFVDADKDNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred eeeeeecchhhhHHHHHhcCCCCceeEEEEccchHHHHHHHHHHHhhcccccEEEEe
Confidence 8999999876432 23578999999987544 558999999999999984
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.1e-09 Score=78.20 Aligned_cols=109 Identities=18% Similarity=0.174 Sum_probs=78.6
Q ss_pred HHHHHhccCCCCCE-EEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC
Q psy10572 40 MLELLKDKIKPGAR-ILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG 118 (204)
Q Consensus 40 ~~~~l~~~~~~~~~-vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~ 118 (204)
+++.+.+.+.+... |||||||+|..+.++++.+ |.....-.|+++......+......+..++.. -+..|+...
T Consensus 14 Il~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~l-P~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~----P~~lDv~~~ 88 (204)
T PF06080_consen 14 ILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQAL-PHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRP----PLALDVSAP 88 (204)
T ss_pred HHHHHHHHhCccCceEEEEcCCccHHHHHHHHHC-CCCEEcCCCCChHHHhhHHHHHHhcCCcccCC----CeEeecCCC
Confidence 44555554555554 9999999999999999999 77888999999999888877776644222221 133443322
Q ss_pred C--------CCCCCeeEEEECCCccc--------hhHHHHHhcCCCcEEEE
Q psy10572 119 Y--------EREAPYDIIHVSPSYFT--------IPQKLLDQLVPGGRMVM 153 (204)
Q Consensus 119 ~--------~~~~~~D~v~~~~~~~~--------~~~~~~~~Lk~gG~l~~ 153 (204)
. ....+||.|++...+|- +++.+.++|++||.|++
T Consensus 89 ~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~ 139 (204)
T PF06080_consen 89 PWPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFL 139 (204)
T ss_pred CCccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEE
Confidence 1 12468999998877653 56888899999999977
|
The function of this family is unknown. |
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.4e-09 Score=80.29 Aligned_cols=104 Identities=21% Similarity=0.189 Sum_probs=83.1
Q ss_pred ccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceE
Q psy10572 30 DISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQ 109 (204)
Q Consensus 30 ~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~ 109 (204)
++....+...+++... +.++..|||||+|.|.+|..+++... .|+++|+++.++...++.... ..+++
T Consensus 12 FL~d~~v~~kIv~~a~--~~~~d~VlEIGpG~GaLT~~Ll~~~~---~v~aiEiD~~l~~~L~~~~~~-------~~n~~ 79 (259)
T COG0030 12 FLIDKNVIDKIVEAAN--ISPGDNVLEIGPGLGALTEPLLERAA---RVTAIEIDRRLAEVLKERFAP-------YDNLT 79 (259)
T ss_pred cccCHHHHHHHHHhcC--CCCCCeEEEECCCCCHHHHHHHhhcC---eEEEEEeCHHHHHHHHHhccc-------ccceE
Confidence 3356677788888777 67789999999999999999999874 899999999999999988753 46899
Q ss_pred EEEecCCCCCCCCC-CeeEEEECCCccchhHHHHHhc
Q psy10572 110 FVVWNGKHGYEREA-PYDIIHVSPSYFTIPQKLLDQL 145 (204)
Q Consensus 110 ~~~~d~~~~~~~~~-~~D~v~~~~~~~~~~~~~~~~L 145 (204)
++++|+....++.- .++.|++|.++.-...-+.++|
T Consensus 80 vi~~DaLk~d~~~l~~~~~vVaNlPY~Isspii~kll 116 (259)
T COG0030 80 VINGDALKFDFPSLAQPYKVVANLPYNISSPILFKLL 116 (259)
T ss_pred EEeCchhcCcchhhcCCCEEEEcCCCcccHHHHHHHH
Confidence 99999987766532 6899999999865333333333
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.8e-09 Score=80.47 Aligned_cols=92 Identities=24% Similarity=0.271 Sum_probs=74.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
..+..+|+|||+|.|.++..+++.. |+.+++.+|. |..++.+++ . ++++++.+|+. ...+. +|+
T Consensus 98 ~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~~~~---~--------~rv~~~~gd~f-~~~P~--~D~ 161 (241)
T PF00891_consen 98 FSGFKTVVDVGGGSGHFAIALARAY-PNLRATVFDL-PEVIEQAKE---A--------DRVEFVPGDFF-DPLPV--ADV 161 (241)
T ss_dssp TTTSSEEEEET-TTSHHHHHHHHHS-TTSEEEEEE--HHHHCCHHH---T--------TTEEEEES-TT-TCCSS--ESE
T ss_pred ccCccEEEeccCcchHHHHHHHHHC-CCCcceeecc-Hhhhhcccc---c--------cccccccccHH-hhhcc--ccc
Confidence 3556799999999999999999998 8889999997 778888877 1 58999999988 44443 999
Q ss_pred EEECCCccc--------hhHHHHHhcCCC--cEEEEEe
Q psy10572 128 IHVSPSYFT--------IPQKLLDQLVPG--GRMVMPV 155 (204)
Q Consensus 128 v~~~~~~~~--------~~~~~~~~Lk~g--G~l~~~~ 155 (204)
+++...+++ +++++.+.|+|| |+|++..
T Consensus 162 ~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e 199 (241)
T PF00891_consen 162 YLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIE 199 (241)
T ss_dssp EEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEE
T ss_pred eeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence 999988876 568899999998 9998844
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >KOG0820|consensus | Back alignment and domain information |
|---|
Probab=99.02 E-value=5e-09 Score=79.37 Aligned_cols=102 Identities=22% Similarity=0.274 Sum_probs=84.3
Q ss_pred ccccCCccc-CChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCcc
Q psy10572 23 RQIGYGADI-SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSE 101 (204)
Q Consensus 23 ~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~ 101 (204)
+....|+++ .++.+.+.+++... ++++..|||+|.|+|.++..+.+... +|+++|.++.++....+++....
T Consensus 32 fnkd~GQHilkNp~v~~~I~~ka~--~k~tD~VLEvGPGTGnLT~~lLe~~k---kVvA~E~Dprmvael~krv~gtp-- 104 (315)
T KOG0820|consen 32 FNKDFGQHILKNPLVIDQIVEKAD--LKPTDVVLEVGPGTGNLTVKLLEAGK---KVVAVEIDPRMVAELEKRVQGTP-- 104 (315)
T ss_pred cccccchhhhcCHHHHHHHHhccC--CCCCCEEEEeCCCCCHHHHHHHHhcC---eEEEEecCcHHHHHHHHHhcCCC--
Confidence 345567777 56777888888777 89999999999999999999999764 99999999999999999987632
Q ss_pred ccCccceEEEEecCCCCCCCCCCeeEEEECCCcc
Q psy10572 102 LLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYF 135 (204)
Q Consensus 102 ~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~ 135 (204)
.....+++++|......+ .||.+++|.++.
T Consensus 105 --~~~kLqV~~gD~lK~d~P--~fd~cVsNlPyq 134 (315)
T KOG0820|consen 105 --KSGKLQVLHGDFLKTDLP--RFDGCVSNLPYQ 134 (315)
T ss_pred --ccceeeEEecccccCCCc--ccceeeccCCcc
Confidence 245799999998876654 499999988774
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=99.00 E-value=6.7e-10 Score=89.56 Aligned_cols=157 Identities=18% Similarity=0.221 Sum_probs=95.3
Q ss_pred ccccCCccc-CChHHHHHHHHHHhccCCC-CCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCc
Q psy10572 23 RQIGYGADI-SSPHIHAQMLELLKDKIKP-GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNS 100 (204)
Q Consensus 23 ~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~ 100 (204)
+.++.+.+. .+..+...+.+.+...+.. +..|||+.||.|.+++.++.... +|+|+|.++.+++.|+.++..++
T Consensus 167 ~~~~~~sFfQvN~~~~~~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~~~---~V~gvE~~~~av~~A~~Na~~N~- 242 (352)
T PF05958_consen 167 FRISPGSFFQVNPEQNEKLYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKKAK---KVIGVEIVEEAVEDARENAKLNG- 242 (352)
T ss_dssp EEEETTS---SBHHHHHHHHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCCSS---EEEEEES-HHHHHHHHHHHHHTT-
T ss_pred EEECCCcCccCcHHHHHHHHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhhCC---eEEEeeCCHHHHHHHHHHHHHcC-
Confidence 344445555 5666777777766655432 23899999999999999999774 99999999999999999999865
Q ss_pred cccCccceEEEEecCCCCC----------------CCCCCeeEEEECCCccchhHHHHHhc-CCCcEEEEEecCCCCcce
Q psy10572 101 ELLDQGRVQFVVWNGKHGY----------------EREAPYDIIHVSPSYFTIPQKLLDQL-VPGGRMVMPVGEPFKGQN 163 (204)
Q Consensus 101 ~~~~~~~~~~~~~d~~~~~----------------~~~~~~D~v~~~~~~~~~~~~~~~~L-k~gG~l~~~~~~~~~~~~ 163 (204)
..|++++.++..+.. .....+|+|+.++|-..+.+.+.+.+ ++.=+++++|.+......
T Consensus 243 ----i~n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~~~~~~ivYvSCnP~tlaRD 318 (352)
T PF05958_consen 243 ----IDNVEFIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLDEKVIELIKKLKRIVYVSCNPATLARD 318 (352)
T ss_dssp ------SEEEEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-SCHHHHHHHHHSSEEEEEES-HHHHHHH
T ss_pred ----CCcceEEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCchHHHHHHHhcCCeEEEEECCHHHHHHH
Confidence 478999987643210 11236899999998766544333322 445567776655443333
Q ss_pred EEEEeecCCceEEEeeeeeeeeeeecccc
Q psy10572 164 LTIIDKLADGYTIVTTVVRGVRTNPLYRD 192 (204)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~pl~~~ 192 (204)
+..+.+ .+.+ ..+.++...|.+.-
T Consensus 319 l~~L~~----~y~~-~~v~~~DmFP~T~H 342 (352)
T PF05958_consen 319 LKILKE----GYKL-EKVQPVDMFPQTHH 342 (352)
T ss_dssp HHHHHC----CEEE-EEEEEE-SSTTSS-
T ss_pred HHHHhh----cCEE-EEEEEeecCCCCCc
Confidence 333322 3566 67777777777643
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.8e-09 Score=88.98 Aligned_cols=103 Identities=19% Similarity=0.100 Sum_probs=84.3
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCC--CCCCCCCCeeE
Q psy10572 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGK--HGYEREAPYDI 127 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~~D~ 127 (204)
.+..+||||||.|.+...++... |+..++|+|++...+..+....... +..|+.++..|+. ...++++++|.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~-p~~~~iGiE~~~~~~~~~~~~~~~~-----~l~N~~~~~~~~~~~~~~~~~~sv~~ 420 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMN-PDALFIGVEVYLNGVANVLKLAGEQ-----NITNFLLFPNNLDLILNDLPNNSLDG 420 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHc-----CCCeEEEEcCCHHHHHHhcCcccccE
Confidence 45689999999999999999998 8889999999999888887776553 2568888887753 23356688999
Q ss_pred EEECCCccc--------------hhHHHHHhcCCCcEEEEEecCC
Q psy10572 128 IHVSPSYFT--------------IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 128 v~~~~~~~~--------------~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
|+++.+.+| +++.+.+.|+|||.+.+.+-..
T Consensus 421 i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~ 465 (506)
T PRK01544 421 IYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIE 465 (506)
T ss_pred EEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCH
Confidence 999988866 4578999999999999876543
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.3e-08 Score=79.23 Aligned_cols=119 Identities=24% Similarity=0.248 Sum_probs=89.4
Q ss_pred HHHHHHHHHhc--cCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe
Q psy10572 36 IHAQMLELLKD--KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW 113 (204)
Q Consensus 36 ~~~~~~~~l~~--~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 113 (204)
....++..+.. +.++ ++||-||.|.|..+..+.++. +-.+++.+|+++..++.+++.+....... ..++++++..
T Consensus 61 ~yhEml~h~~~~ah~~p-k~VLiiGgGdG~tlRevlkh~-~ve~i~~VEID~~Vi~~ar~~l~~~~~~~-~dpRv~i~i~ 137 (282)
T COG0421 61 IYHEMLAHVPLLAHPNP-KRVLIIGGGDGGTLREVLKHL-PVERITMVEIDPAVIELARKYLPEPSGGA-DDPRVEIIID 137 (282)
T ss_pred HHHHHHHhchhhhCCCC-CeEEEECCCccHHHHHHHhcC-CcceEEEEEcCHHHHHHHHHhccCccccc-CCCceEEEec
Confidence 44444444442 2244 599999999999999999997 45699999999999999999986632111 1578999999
Q ss_pred cCCCCCCC-CCCeeEEEECCCcc----------chhHHHHHhcCCCcEEEEEecC
Q psy10572 114 NGKHGYER-EAPYDIIHVSPSYF----------TIPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 114 d~~~~~~~-~~~~D~v~~~~~~~----------~~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
|..+.... ..+||+|+++...+ .+.+.+.++|+++|+++....+
T Consensus 138 Dg~~~v~~~~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~ 192 (282)
T COG0421 138 DGVEFLRDCEEKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGS 192 (282)
T ss_pred cHHHHHHhCCCcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEecCC
Confidence 98754432 23799999986544 2558999999999999998444
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.4e-08 Score=77.01 Aligned_cols=117 Identities=21% Similarity=0.304 Sum_probs=81.9
Q ss_pred cCCccc-CChHHHHHHHHHHhccCC---CCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCcc
Q psy10572 26 GYGADI-SSPHIHAQMLELLKDKIK---PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSE 101 (204)
Q Consensus 26 ~~~~~~-~~~~~~~~~~~~l~~~~~---~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~ 101 (204)
|.|.+. .+......++..-..... ...++||||+|.|..+..++..+. +|++.|.|+.|....+++
T Consensus 66 gRG~MFvfS~~Q~~~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~---~v~aTE~S~~Mr~rL~~k------- 135 (265)
T PF05219_consen 66 GRGSMFVFSEEQFRKLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAPLFK---EVYATEASPPMRWRLSKK------- 135 (265)
T ss_pred cCCcEEEecHHHHHHHhhhhccCCCCcccCCceEEecCCCcHHHHHHHhhcc---eEEeecCCHHHHHHHHhC-------
Confidence 444333 455555555554321111 356899999999999999999985 899999999997776653
Q ss_pred ccCccceEEEEecCCCCCCCCCCeeEEEECCCccc------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 102 LLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFT------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 102 ~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
+++++..+-.. ....+||+|.|...+.. +++.+++.|+|+|++++.+.-+.
T Consensus 136 -----g~~vl~~~~w~--~~~~~fDvIscLNvLDRc~~P~~LL~~i~~~l~p~G~lilAvVlP~ 192 (265)
T PF05219_consen 136 -----GFTVLDIDDWQ--QTDFKFDVISCLNVLDRCDRPLTLLRDIRRALKPNGRLILAVVLPF 192 (265)
T ss_pred -----CCeEEehhhhh--ccCCceEEEeehhhhhccCCHHHHHHHHHHHhCCCCEEEEEEEecc
Confidence 34444433211 12357999999877754 67999999999999999775443
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >KOG1975|consensus | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.2e-09 Score=81.58 Aligned_cols=109 Identities=16% Similarity=0.195 Sum_probs=80.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcC--ccccCccceEEEEecCCCC-----C-
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGN--SELLDQGRVQFVVWNGKHG-----Y- 119 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~d~~~~-----~- 119 (204)
.+++..++++|||.|+..+..-+.. -..++|+|+....++.|+++.+.-. .++. .=...|+.+|.... .
T Consensus 115 ~~~~~~~~~LgCGKGGDLlKw~kAg--I~~~igiDIAevSI~qa~~RYrdm~~r~~~~-~f~a~f~~~Dc~~~~l~d~~e 191 (389)
T KOG1975|consen 115 TKRGDDVLDLGCGKGGDLLKWDKAG--IGEYIGIDIAEVSINQARKRYRDMKNRFKKF-IFTAVFIAADCFKERLMDLLE 191 (389)
T ss_pred hccccccceeccCCcccHhHhhhhc--ccceEeeehhhccHHHHHHHHHHHHhhhhcc-cceeEEEEeccchhHHHHhcc
Confidence 4788899999999988876665543 2489999999999999999987521 0000 01367888886621 1
Q ss_pred CCCCCeeEEEECCCccc----------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 120 EREAPYDIIHVSPSYFT----------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 120 ~~~~~~D~v~~~~~~~~----------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
+...+||+|-+...+|. .+..+...|+|||.++-++++..
T Consensus 192 ~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd 241 (389)
T KOG1975|consen 192 FKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSD 241 (389)
T ss_pred CCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHH
Confidence 22334999998888765 44688899999999999988764
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.6e-08 Score=85.91 Aligned_cols=104 Identities=22% Similarity=0.267 Sum_probs=74.8
Q ss_pred CCcccCChHHHHHHHHHHhccCC-----CCCEEEEEcCCCcHHHHHHHHHhCC-------CceEEEEEcCHHHHHHHHHH
Q psy10572 27 YGADISSPHIHAQMLELLKDKIK-----PGARILDIGSGSGYLTACLAYMAGP-------EGRVYGVEHVMELAESSIKN 94 (204)
Q Consensus 27 ~~~~~~~~~~~~~~~~~l~~~~~-----~~~~vLdiG~G~G~~~~~l~~~~~~-------~~~v~~vD~~~~~~~~a~~~ 94 (204)
.|++.+++.+...|++.+.+... ...+|||.|||+|.+...++..... ..+++|+|+++.++..++.+
T Consensus 3 ~GqfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~ 82 (524)
T TIGR02987 3 YGTFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKL 82 (524)
T ss_pred CcccCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHH
Confidence 47888999999999998863322 3469999999999999888876621 24789999999999999988
Q ss_pred hhhcCccccCccceEEEEecCCCCC-----CCCCCeeEEEECCCcc
Q psy10572 95 IDKGNSELLDQGRVQFVVWNGKHGY-----EREAPYDIIHVSPSYF 135 (204)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~~D~v~~~~~~~ 135 (204)
+.... ...+.+...|..... ...+.||+|+.|+|+-
T Consensus 83 l~~~~-----~~~~~i~~~d~l~~~~~~~~~~~~~fD~IIgNPPy~ 123 (524)
T TIGR02987 83 LGEFA-----LLEINVINFNSLSYVLLNIESYLDLFDIVITNPPYG 123 (524)
T ss_pred HhhcC-----CCCceeeecccccccccccccccCcccEEEeCCCcc
Confidence 76532 112444545433211 1125799999998874
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=98.90 E-value=8.1e-09 Score=80.86 Aligned_cols=130 Identities=20% Similarity=0.217 Sum_probs=98.0
Q ss_pred CCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCcc
Q psy10572 27 YGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQG 106 (204)
Q Consensus 27 ~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~ 106 (204)
.|..+.+..-.......+. ..++..|||+++++|.-+..++......+.+++.|+++..+...+.++... +..
T Consensus 64 ~G~~~vQd~sS~l~~~~L~--~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~-----g~~ 136 (283)
T PF01189_consen 64 NGLFYVQDESSQLVALALD--PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRL-----GVF 136 (283)
T ss_dssp TTSEEEHHHHHHHHHHHHT--TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHT-----T-S
T ss_pred CCcEEeccccccccccccc--ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhc-----CCc
Confidence 3444444444444455555 688899999999999999999998866789999999999999999998873 356
Q ss_pred ceEEEEecCCCC--CCCCCCeeEEEECCCccc----------------------------hhHHHHHhc----CCCcEEE
Q psy10572 107 RVQFVVWNGKHG--YEREAPYDIIHVSPSYFT----------------------------IPQKLLDQL----VPGGRMV 152 (204)
Q Consensus 107 ~~~~~~~d~~~~--~~~~~~~D~v~~~~~~~~----------------------------~~~~~~~~L----k~gG~l~ 152 (204)
++.+...|.... ......||.|++++++.. +++.+.+.+ ||||+++
T Consensus 137 ~v~~~~~D~~~~~~~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lv 216 (283)
T PF01189_consen 137 NVIVINADARKLDPKKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLV 216 (283)
T ss_dssp SEEEEESHHHHHHHHHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEE
T ss_pred eEEEEeeccccccccccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEE
Confidence 788887775533 122346999999988733 336777899 9999999
Q ss_pred EEecCCCCcce
Q psy10572 153 MPVGEPFKGQN 163 (204)
Q Consensus 153 ~~~~~~~~~~~ 163 (204)
.++++-..++.
T Consensus 217 YsTCS~~~eEN 227 (283)
T PF01189_consen 217 YSTCSLSPEEN 227 (283)
T ss_dssp EEESHHHGGGT
T ss_pred EEeccHHHHHH
Confidence 99987665543
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.9e-08 Score=75.69 Aligned_cols=117 Identities=15% Similarity=0.039 Sum_probs=85.0
Q ss_pred HHHHHHHHHhccC-CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEec
Q psy10572 36 IHAQMLELLKDKI-KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWN 114 (204)
Q Consensus 36 ~~~~~~~~l~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d 114 (204)
++.+++....-.. +..++||-+|.|.|..+..++++- . +|+.+|+++.+++.+++.+..... ....++++++..
T Consensus 57 iYHEmLvHppl~~h~~pk~VLIiGGGDGg~~REvLkh~--~-~v~mVeID~~Vv~~~k~~lP~~~~-~~~DpRv~l~~~- 131 (262)
T PRK00536 57 IESELLAHMGGCTKKELKEVLIVDGFDLELAHQLFKYD--T-HVDFVQADEKILDSFISFFPHFHE-VKNNKNFTHAKQ- 131 (262)
T ss_pred hHHHHHHHHHHhhCCCCCeEEEEcCCchHHHHHHHCcC--C-eeEEEECCHHHHHHHHHHCHHHHH-hhcCCCEEEeeh-
Confidence 5555555444211 455799999999999999999984 3 999999999999999997654211 134577888762
Q ss_pred CCCCCCCCCCeeEEEECCC-ccchhHHHHHhcCCCcEEEEEecCCC
Q psy10572 115 GKHGYEREAPYDIIHVSPS-YFTIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 115 ~~~~~~~~~~~D~v~~~~~-~~~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
..+ ...++||+||++.. .....+.+.+.|+|||+++....+..
T Consensus 132 ~~~--~~~~~fDVIIvDs~~~~~fy~~~~~~L~~~Gi~v~Qs~sp~ 175 (262)
T PRK00536 132 LLD--LDIKKYDLIICLQEPDIHKIDGLKRMLKEDGVFISVAKHPL 175 (262)
T ss_pred hhh--ccCCcCCEEEEcCCCChHHHHHHHHhcCCCcEEEECCCCcc
Confidence 111 12367999999944 34566899999999999998665554
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.7e-08 Score=80.13 Aligned_cols=106 Identities=22% Similarity=0.237 Sum_probs=89.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
..+|..|+|+-+|.|.+++.+++...+ .|+++|++|.+++.+++|++.|+. ...+..+.+|........+.+|.
T Consensus 186 v~~GE~V~DmFAGVGpfsi~~Ak~g~~--~V~A~diNP~A~~~L~eNi~LN~v----~~~v~~i~gD~rev~~~~~~aDr 259 (341)
T COG2520 186 VKEGETVLDMFAGVGPFSIPIAKKGRP--KVYAIDINPDAVEYLKENIRLNKV----EGRVEPILGDAREVAPELGVADR 259 (341)
T ss_pred hcCCCEEEEccCCcccchhhhhhcCCc--eEEEEecCHHHHHHHHHHHHhcCc----cceeeEEeccHHHhhhccccCCE
Confidence 467999999999999999999998643 499999999999999999998762 23488999998876555478999
Q ss_pred EEECCCc--cchhHHHHHhcCCCcEEEEEecCCC
Q psy10572 128 IHVSPSY--FTIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 128 v~~~~~~--~~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
|+++.+. +.++..+...++++|++.+-.....
T Consensus 260 Iim~~p~~a~~fl~~A~~~~k~~g~iHyy~~~~e 293 (341)
T COG2520 260 IIMGLPKSAHEFLPLALELLKDGGIIHYYEFVPE 293 (341)
T ss_pred EEeCCCCcchhhHHHHHHHhhcCcEEEEEeccch
Confidence 9999876 5688999999999999988655444
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=8.3e-09 Score=80.72 Aligned_cols=92 Identities=21% Similarity=0.247 Sum_probs=73.1
Q ss_pred hHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe
Q psy10572 34 PHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW 113 (204)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 113 (204)
|-+...+++.+. +.++..++|.+||.|..+..+++..++.++|+|+|.++.+++.+++++.. ..++.++++
T Consensus 5 pVll~Evl~~L~--~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-------~~ri~~i~~ 75 (296)
T PRK00050 5 PVLLDEVVDALA--IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-------FGRFTLVHG 75 (296)
T ss_pred cccHHHHHHhhC--CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-------CCcEEEEeC
Confidence 446677788776 67888999999999999999999985578999999999999999987643 257999999
Q ss_pred cCCCCC--CCC--CCeeEEEECCCc
Q psy10572 114 NGKHGY--ERE--APYDIIHVSPSY 134 (204)
Q Consensus 114 d~~~~~--~~~--~~~D~v~~~~~~ 134 (204)
++.... .+. .++|.|+++.+.
T Consensus 76 ~f~~l~~~l~~~~~~vDgIl~DLGv 100 (296)
T PRK00050 76 NFSNLKEVLAEGLGKVDGILLDLGV 100 (296)
T ss_pred CHHHHHHHHHcCCCccCEEEECCCc
Confidence 976421 111 279999887554
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.4e-08 Score=77.97 Aligned_cols=109 Identities=28% Similarity=0.344 Sum_probs=80.5
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCC-CC-Cee
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYER-EA-PYD 126 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~-~~D 126 (204)
+...+||-||.|.|..+..+.++. +..+++.+|+++.+++.+++.+...... ...++++++.+|+...... .+ +||
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~-~~d~r~~i~~~Dg~~~l~~~~~~~yD 152 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEG-LDDPRVRIIIGDGRKFLKETQEEKYD 152 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTT-GGSTTEEEEESTHHHHHHTSSST-EE
T ss_pred CCcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccc-cCCCceEEEEhhhHHHHHhccCCccc
Confidence 457899999999999999998875 3458999999999999999987652211 2357899999997643211 13 799
Q ss_pred EEEECCCcc----------chhHHHHHhcCCCcEEEEEecCCC
Q psy10572 127 IIHVSPSYF----------TIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 127 ~v~~~~~~~----------~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
+|+++...+ .+.+.+.+.|+|||++++...+..
T Consensus 153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~ 195 (246)
T PF01564_consen 153 VIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPF 195 (246)
T ss_dssp EEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETT
T ss_pred EEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcc
Confidence 999875542 255889999999999999764443
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.8e-08 Score=82.30 Aligned_cols=97 Identities=21% Similarity=0.184 Sum_probs=68.0
Q ss_pred CCEEEEEcCCCcHHHHHHHHHh---CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 51 GARILDIGSGSGYLTACLAYMA---GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 51 ~~~vLdiG~G~G~~~~~l~~~~---~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
+..|+|+|||+|.++...++.. +...+|++||.++.+....+..+..++ -.++|+++++|..+...+ .++|+
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~----w~~~V~vi~~d~r~v~lp-ekvDI 261 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANG----WGDKVTVIHGDMREVELP-EKVDI 261 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTT----TTTTEEEEES-TTTSCHS-S-EEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcC----CCCeEEEEeCcccCCCCC-CceeE
Confidence 4689999999999987776653 224599999999998888777655533 136899999998876554 58999
Q ss_pred EEECC----Cc----cchhHHHHHhcCCCcEEE
Q psy10572 128 IHVSP----SY----FTIPQKLLDQLVPGGRMV 152 (204)
Q Consensus 128 v~~~~----~~----~~~~~~~~~~Lk~gG~l~ 152 (204)
|++-. +. ...+....+.|||+|+++
T Consensus 262 IVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 262 IVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp EEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred EEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 98732 12 234466668899999874
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=7.8e-09 Score=76.74 Aligned_cols=107 Identities=25% Similarity=0.273 Sum_probs=83.0
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC--CCCCCCe
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG--YEREAPY 125 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~ 125 (204)
.+.+.+|||.|.|-|+.++..+++.. .+|+.+|.++..++.|.-|- .+..+....++++.+|+.+. .+++++|
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rGA--~~VitvEkdp~VLeLa~lNP---wSr~l~~~~i~iilGD~~e~V~~~~D~sf 206 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERGA--IHVITVEKDPNVLELAKLNP---WSRELFEIAIKIILGDAYEVVKDFDDESF 206 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcCC--cEEEEEeeCCCeEEeeccCC---CCccccccccEEecccHHHHHhcCCcccc
Confidence 46789999999999999999998742 39999999999999987652 11112234689999997643 3567889
Q ss_pred eEEEECCCccc---------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 126 DIIHVSPSYFT---------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 126 D~v~~~~~~~~---------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
|+|+-+++-.. +-.++.+.|+|||+++=-+.++.
T Consensus 207 DaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg 249 (287)
T COG2521 207 DAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPG 249 (287)
T ss_pred ceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCC
Confidence 99998887643 33788999999999987776654
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.5e-07 Score=63.75 Aligned_cols=96 Identities=10% Similarity=-0.037 Sum_probs=72.1
Q ss_pred CCCCEEEEEcCCCcH-HHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCC-CCCee
Q psy10572 49 KPGARILDIGSGSGY-LTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYER-EAPYD 126 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~-~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D 126 (204)
..+.+++|||||+|. ++..+++.. ..|+++|+++..++.++++ .+.++.+|+.....+ -..+|
T Consensus 15 ~~~~kileIG~GfG~~vA~~L~~~G---~~ViaIDi~~~aV~~a~~~------------~~~~v~dDlf~p~~~~y~~a~ 79 (134)
T PRK04148 15 GKNKKIVELGIGFYFKVAKKLKESG---FDVIVIDINEKAVEKAKKL------------GLNAFVDDLFNPNLEIYKNAK 79 (134)
T ss_pred ccCCEEEEEEecCCHHHHHHHHHCC---CEEEEEECCHHHHHHHHHh------------CCeEEECcCCCCCHHHHhcCC
Confidence 345789999999996 777777643 4999999999998888664 367889998765443 36799
Q ss_pred EEEECCCccchhHHHHHhc-CCCcEEEEEecCCC
Q psy10572 127 IIHVSPSYFTIPQKLLDQL-VPGGRMVMPVGEPF 159 (204)
Q Consensus 127 ~v~~~~~~~~~~~~~~~~L-k~gG~l~~~~~~~~ 159 (204)
+|++.-+..++...+.++- +-|.-+++...++.
T Consensus 80 liysirpp~el~~~~~~la~~~~~~~~i~~l~~e 113 (134)
T PRK04148 80 LIYSIRPPRDLQPFILELAKKINVPLIIKPLSGE 113 (134)
T ss_pred EEEEeCCCHHHHHHHHHHHHHcCCCEEEEcCCCC
Confidence 9999988888776666554 45666777665554
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.9e-08 Score=71.45 Aligned_cols=100 Identities=24% Similarity=0.302 Sum_probs=79.2
Q ss_pred EEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEEECC
Q psy10572 53 RILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSP 132 (204)
Q Consensus 53 ~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 132 (204)
+++|+|+|.|.-++.++-.. |+.+++.+|....-+...+..... ++.+|+++++..+.. .....+||+|++.+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~-p~~~~~LvEs~~KK~~FL~~~~~~-----L~L~nv~v~~~R~E~-~~~~~~fd~v~aRA 123 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIAR-PDLQVTLVESVGKKVAFLKEVVRE-----LGLSNVEVINGRAEE-PEYRESFDVVTARA 123 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH--TTSEEEEEESSHHHHHHHHHHHHH-----HT-SSEEEEES-HHH-TTTTT-EEEEEEES
T ss_pred eEEecCCCCCChhHHHHHhC-CCCcEEEEeCCchHHHHHHHHHHH-----hCCCCEEEEEeeecc-cccCCCccEEEeeh
Confidence 89999999999999998887 788999999999988888877766 456789999998776 33457899999987
Q ss_pred Cc--cchhHHHHHhcCCCcEEEEEecCCC
Q psy10572 133 SY--FTIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 133 ~~--~~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
.. ..+...+...+++||.+++.-....
T Consensus 124 v~~l~~l~~~~~~~l~~~G~~l~~KG~~~ 152 (184)
T PF02527_consen 124 VAPLDKLLELARPLLKPGGRLLAYKGPDA 152 (184)
T ss_dssp SSSHHHHHHHHGGGEEEEEEEEEEESS--
T ss_pred hcCHHHHHHHHHHhcCCCCEEEEEcCCCh
Confidence 65 4577888899999999998665543
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.2e-07 Score=74.08 Aligned_cols=131 Identities=17% Similarity=0.164 Sum_probs=85.7
Q ss_pred cccCCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcH----HHHHHHHHhC---CCceEEEEEcCHHHHHHHHHHhh
Q psy10572 24 QIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGY----LTACLAYMAG---PEGRVYGVEHVMELAESSIKNID 96 (204)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~----~~~~l~~~~~---~~~~v~~vD~~~~~~~~a~~~~~ 96 (204)
.++...+.-.+.....+.+.+... ....+|+..||++|- +++.+....+ ...+|+|+|+|+.+++.|++..-
T Consensus 90 tineT~FFRd~~~f~~L~~~~~~~-~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y 168 (287)
T PRK10611 90 TTNLTAFFREAHHFPILAEHARRR-SGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIY 168 (287)
T ss_pred hCCCCCccCCcHHHHHHHHHHHhc-CCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCC
Confidence 344444454555555555544322 234799999999994 4555555431 14689999999999999988731
Q ss_pred h--------------c-----C-------ccccCccceEEEEecCCCCC-CCCCCeeEEEECCCccc--------hhHHH
Q psy10572 97 K--------------G-----N-------SELLDQGRVQFVVWNGKHGY-EREAPYDIIHVSPSYFT--------IPQKL 141 (204)
Q Consensus 97 ~--------------~-----~-------~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v~~~~~~~~--------~~~~~ 141 (204)
. . . .+......+.|.+.|+.... +..+.||+|+|...+.+ +++.+
T Consensus 169 ~~~~~r~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l 248 (287)
T PRK10611 169 RQEELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRF 248 (287)
T ss_pred CHHHHhcCCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHH
Confidence 1 0 0 00001246788888887643 33578999999766543 55789
Q ss_pred HHhcCCCcEEEEEe
Q psy10572 142 LDQLVPGGRMVMPV 155 (204)
Q Consensus 142 ~~~Lk~gG~l~~~~ 155 (204)
.+.|+|||+|++-.
T Consensus 249 ~~~L~pgG~L~lG~ 262 (287)
T PRK10611 249 VPLLKPDGLLFAGH 262 (287)
T ss_pred HHHhCCCcEEEEeC
Confidence 99999999987744
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=98.80 E-value=5.7e-08 Score=78.71 Aligned_cols=99 Identities=13% Similarity=0.113 Sum_probs=79.8
Q ss_pred CEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCC-CCCeeEEEE
Q psy10572 52 ARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYER-EAPYDIIHV 130 (204)
Q Consensus 52 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~v~~ 130 (204)
.+|||+.||+|..++.+++......+|+++|+++.+++.+++|++.+. ..++.+++.|....... ...||+|.+
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~-----~~~~~v~~~Da~~~l~~~~~~fDvIdl 120 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNS-----VENIEVPNEDAANVLRYRNRKFHVIDI 120 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhC-----CCcEEEEchhHHHHHHHhCCCCCEEEe
Confidence 589999999999999999875222489999999999999999998754 34688888887643321 256999999
Q ss_pred CCCcc--chhHHHHHhcCCCcEEEEEe
Q psy10572 131 SPSYF--TIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 131 ~~~~~--~~~~~~~~~Lk~gG~l~~~~ 155 (204)
++.-. .+++.+.+.++++|.+.++.
T Consensus 121 DPfGs~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 121 DPFGTPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred CCCCCcHHHHHHHHHhcccCCEEEEEe
Confidence 88432 47788999999999999974
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.80 E-value=5.6e-08 Score=71.93 Aligned_cols=107 Identities=19% Similarity=0.168 Sum_probs=66.4
Q ss_pred CCCEEEEEcCCCcH----HHHHHHHHh----CCCceEEEEEcCHHHHHHHHHHhhh--------------c-----C-cc
Q psy10572 50 PGARILDIGSGSGY----LTACLAYMA----GPEGRVYGVEHVMELAESSIKNIDK--------------G-----N-SE 101 (204)
Q Consensus 50 ~~~~vLdiG~G~G~----~~~~l~~~~----~~~~~v~~vD~~~~~~~~a~~~~~~--------------~-----~-~~ 101 (204)
+..+|+..||++|. +++.+.... +...+++|+|+|+.+++.|++..=. . + .-
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 45699999999995 455555522 1246999999999999999876410 0 0 00
Q ss_pred cc---CccceEEEEecCCCCCCCCCCeeEEEECCCccc--------hhHHHHHhcCCCcEEEEEec
Q psy10572 102 LL---DQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFT--------IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 102 ~~---~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~--------~~~~~~~~Lk~gG~l~~~~~ 156 (204)
.+ ...++.|.+.|+.+.....+.||+|+|..++-. +++.+.+.|+|||.|++...
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~s 176 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHS 176 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 00 124789999998884455688999999988744 56788899999999999443
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >KOG1500|consensus | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.7e-08 Score=76.36 Aligned_cols=99 Identities=25% Similarity=0.296 Sum_probs=76.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEE
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDII 128 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 128 (204)
-.++.|||+|||+|.++...+.... .+|+++|. ..|.+.|++.++.+. ...++.++.+.+.+...+ ++.|++
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqAGA--~~vYAvEA-S~MAqyA~~Lv~~N~----~~~rItVI~GKiEdieLP-Ek~Dvi 247 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQAGA--KKVYAVEA-SEMAQYARKLVASNN----LADRITVIPGKIEDIELP-EKVDVI 247 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHhCc--ceEEEEeh-hHHHHHHHHHHhcCC----ccceEEEccCccccccCc-hhccEE
Confidence 4678999999999999999988753 49999995 568999999887753 357899999998776655 679999
Q ss_pred EECCCccchh--------HHHHHhcCCCcEEEEEe
Q psy10572 129 HVSPSYFTIP--------QKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 129 ~~~~~~~~~~--------~~~~~~Lk~gG~l~~~~ 155 (204)
|+-+.-.-+. -.+.+.|+|+|..+=++
T Consensus 248 ISEPMG~mL~NERMLEsYl~Ark~l~P~GkMfPT~ 282 (517)
T KOG1500|consen 248 ISEPMGYMLVNERMLESYLHARKWLKPNGKMFPTV 282 (517)
T ss_pred EeccchhhhhhHHHHHHHHHHHhhcCCCCcccCcc
Confidence 9876543322 24558999999886544
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.77 E-value=5.3e-08 Score=70.02 Aligned_cols=78 Identities=9% Similarity=0.065 Sum_probs=61.3
Q ss_pred EEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEEECCCccc------hhHHHHHhcCCCcEEE
Q psy10572 79 YGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFT------IPQKLLDQLVPGGRMV 152 (204)
Q Consensus 79 ~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~------~~~~~~~~Lk~gG~l~ 152 (204)
+|+|+|+.|++.|+++...... ....+++++.+|+...+.+.++||+|++...+++ .++++.++|||||.++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~--~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~ 78 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKAR--SCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVS 78 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccc--cCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEE
Confidence 4899999999999877643110 0124799999998887777789999999887765 4579999999999999
Q ss_pred EEecCC
Q psy10572 153 MPVGEP 158 (204)
Q Consensus 153 ~~~~~~ 158 (204)
+..++.
T Consensus 79 i~d~~~ 84 (160)
T PLN02232 79 ILDFNK 84 (160)
T ss_pred EEECCC
Confidence 876654
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.3e-08 Score=71.34 Aligned_cols=76 Identities=20% Similarity=0.234 Sum_probs=55.2
Q ss_pred CEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCC--CCCC-eeEE
Q psy10572 52 ARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE--REAP-YDII 128 (204)
Q Consensus 52 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~-~D~v 128 (204)
..|+|+.||.|.-++.+++.+. +|+++|+++..++.|+.|+.-.+ ..+++.++++|+.+... .... +|+|
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~---~Viaidid~~~~~~a~hNa~vYG----v~~~I~~i~gD~~~~~~~~~~~~~~D~v 73 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFD---RVIAIDIDPERLECAKHNAEVYG----VADNIDFICGDFFELLKRLKSNKIFDVV 73 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-----GGGEEEEES-HHHHGGGB------SEE
T ss_pred CEEEEeccCcCHHHHHHHHhCC---eEEEEECCHHHHHHHHHHHHHcC----CCCcEEEEeCCHHHHHhhccccccccEE
Confidence 3699999999999999999874 89999999999999999998754 24689999999875431 1122 8999
Q ss_pred EECCCc
Q psy10572 129 HVSPSY 134 (204)
Q Consensus 129 ~~~~~~ 134 (204)
+++++.
T Consensus 74 FlSPPW 79 (163)
T PF09445_consen 74 FLSPPW 79 (163)
T ss_dssp EE---B
T ss_pred EECCCC
Confidence 998776
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.1e-07 Score=72.23 Aligned_cols=95 Identities=21% Similarity=0.224 Sum_probs=78.0
Q ss_pred ccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceE
Q psy10572 30 DISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQ 109 (204)
Q Consensus 30 ~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~ 109 (204)
++.++.+...+++.+. +.++..|||+|+|.|.+|..+++... +++++|.++.+.+..++.+.. .++++
T Consensus 12 FL~~~~~~~~Iv~~~~--~~~~~~VlEiGpG~G~lT~~L~~~~~---~v~~vE~d~~~~~~L~~~~~~-------~~~~~ 79 (262)
T PF00398_consen 12 FLVDPNIADKIVDALD--LSEGDTVLEIGPGPGALTRELLKRGK---RVIAVEIDPDLAKHLKERFAS-------NPNVE 79 (262)
T ss_dssp EEEHHHHHHHHHHHHT--CGTTSEEEEESSTTSCCHHHHHHHSS---EEEEEESSHHHHHHHHHHCTT-------CSSEE
T ss_pred eeCCHHHHHHHHHhcC--CCCCCEEEEeCCCCccchhhHhcccC---cceeecCcHhHHHHHHHHhhh-------cccce
Confidence 4567888889999887 67899999999999999999999873 999999999999999987753 36899
Q ss_pred EEEecCCCCCCCC---CCeeEEEECCCccc
Q psy10572 110 FVVWNGKHGYERE---APYDIIHVSPSYFT 136 (204)
Q Consensus 110 ~~~~d~~~~~~~~---~~~D~v~~~~~~~~ 136 (204)
++.+|+....... .....|++|.++.-
T Consensus 80 vi~~D~l~~~~~~~~~~~~~~vv~NlPy~i 109 (262)
T PF00398_consen 80 VINGDFLKWDLYDLLKNQPLLVVGNLPYNI 109 (262)
T ss_dssp EEES-TTTSCGGGHCSSSEEEEEEEETGTG
T ss_pred eeecchhccccHHhhcCCceEEEEEecccc
Confidence 9999988654432 45778888888743
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.6e-07 Score=71.01 Aligned_cols=97 Identities=20% Similarity=0.268 Sum_probs=60.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHH-HHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAES-SIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
.++..+||+|||+|.++..+++.. ..+++++|+++.++.. .+.+.+.. .....|++. .+..+....-..+|+
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~g--a~~v~avD~~~~~l~~~l~~~~~v~---~~~~~ni~~--~~~~~~~~d~~~~Dv 146 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKG--AKEVYGVDVGYNQLAEKLRQDERVK---VLERTNIRY--VTPADIFPDFATFDV 146 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcC--CCEEEEEeCCHHHHHHHHhcCCCee---EeecCCccc--CCHhHcCCCceeeeE
Confidence 366799999999999999999873 3489999999987765 32221100 001123321 111111112235776
Q ss_pred EEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 128 IHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 128 v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
+++.... ++..+..+|++ |.+++-+
T Consensus 147 sfiS~~~--~l~~i~~~l~~-~~~~~L~ 171 (228)
T TIGR00478 147 SFISLIS--ILPELDLLLNP-NDLTLLF 171 (228)
T ss_pred EEeehHh--HHHHHHHHhCc-CeEEEEc
Confidence 6655443 67899999999 7776644
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.62 E-value=8.8e-07 Score=65.34 Aligned_cols=99 Identities=22% Similarity=0.220 Sum_probs=75.9
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC-------
Q psy10572 47 KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY------- 119 (204)
Q Consensus 47 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~------- 119 (204)
.+.++..|+|+|+.+|.++..+++..++.+.|+|+|+.|-- ..+++.++++|+....
T Consensus 42 i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~----------------~~~~V~~iq~d~~~~~~~~~l~~ 105 (205)
T COG0293 42 LFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK----------------PIPGVIFLQGDITDEDTLEKLLE 105 (205)
T ss_pred eecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc----------------cCCCceEEeeeccCccHHHHHHH
Confidence 35889999999999999999999998776789999987731 1356999999987432
Q ss_pred -CCCCCeeEEEECCCc--------cc---------hhHHHHHhcCCCcEEEEEecCCCCc
Q psy10572 120 -EREAPYDIIHVSPSY--------FT---------IPQKLLDQLVPGGRMVMPVGEPFKG 161 (204)
Q Consensus 120 -~~~~~~D~v~~~~~~--------~~---------~~~~~~~~Lk~gG~l~~~~~~~~~~ 161 (204)
....++|+|+++..- ++ .++-+...|+|||.+++.+..+...
T Consensus 106 ~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~ 165 (205)
T COG0293 106 ALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDF 165 (205)
T ss_pred HcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCH
Confidence 334568999987543 12 2256668999999999988777644
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.6e-07 Score=69.62 Aligned_cols=99 Identities=24% Similarity=0.222 Sum_probs=67.6
Q ss_pred CCEEEEEcCCCcHHHHHH-HHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEE
Q psy10572 51 GARILDIGSGSGYLTACL-AYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIH 129 (204)
Q Consensus 51 ~~~vLdiG~G~G~~~~~l-~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 129 (204)
..+.||.|+|-|+.+..+ .+.+. +|-.+|+.+..++.|++.+.... ....++.+..+.+..++..+||+|+
T Consensus 56 ~~~alDcGAGIGRVTk~lLl~~f~---~VDlVEp~~~Fl~~a~~~l~~~~-----~~v~~~~~~gLQ~f~P~~~~YDlIW 127 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLLPVFD---EVDLVEPVEKFLEQAKEYLGKDN-----PRVGEFYCVGLQDFTPEEGKYDLIW 127 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCCCC-S---EEEEEES-HHHHHHHHHHTCCGG-----CCEEEEEES-GGG----TT-EEEEE
T ss_pred cceEEecccccchhHHHHHHHhcC---EeEEeccCHHHHHHHHHHhcccC-----CCcceEEecCHhhccCCCCcEeEEE
Confidence 468999999999999866 44443 89999999999999998765411 1234555555454444457999999
Q ss_pred ECCCccc--------hhHHHHHhcCCCcEEEEEecC
Q psy10572 130 VSPSYFT--------IPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 130 ~~~~~~~--------~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
+.-.+.+ +++++...|+|+|.+++-..-
T Consensus 128 ~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~ 163 (218)
T PF05891_consen 128 IQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENV 163 (218)
T ss_dssp EES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred ehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecC
Confidence 9877655 457899999999999995543
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.2e-07 Score=68.31 Aligned_cols=96 Identities=17% Similarity=0.173 Sum_probs=59.3
Q ss_pred HHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCC
Q psy10572 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKH 117 (204)
Q Consensus 38 ~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 117 (204)
..+++.+.. .++...|-|+|||.+.++..+.. ...|+..|+.+. +-.++..|+..
T Consensus 61 d~iI~~l~~-~~~~~viaD~GCGdA~la~~~~~----~~~V~SfDLva~--------------------n~~Vtacdia~ 115 (219)
T PF05148_consen 61 DVIIEWLKK-RPKSLVIADFGCGDAKLAKAVPN----KHKVHSFDLVAP--------------------NPRVTACDIAN 115 (219)
T ss_dssp HHHHHHHCT-S-TTS-EEEES-TT-HHHHH--S-------EEEEESS-S--------------------STTEEES-TTS
T ss_pred HHHHHHHHh-cCCCEEEEECCCchHHHHHhccc----CceEEEeeccCC--------------------CCCEEEecCcc
Confidence 345566652 34457999999999999855432 237999997542 33467788887
Q ss_pred CCCCCCCeeEEEECCCc-----cchhHHHHHhcCCCcEEEEEecCC
Q psy10572 118 GYEREAPYDIIHVSPSY-----FTIPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 118 ~~~~~~~~D~v~~~~~~-----~~~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
.+.+.++.|++++...+ ...+.++.|+||+||.|++.....
T Consensus 116 vPL~~~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IAEV~S 161 (219)
T PF05148_consen 116 VPLEDESVDVAVFCLSLMGTNWPDFIREANRVLKPGGILKIAEVKS 161 (219)
T ss_dssp -S--TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred CcCCCCceeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEEEEecc
Confidence 77888999999876544 447799999999999999865443
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.59 E-value=9.4e-07 Score=68.30 Aligned_cols=128 Identities=16% Similarity=0.147 Sum_probs=85.2
Q ss_pred CcccCChHHHHHHHHHHhcc----CC-CCCEEEEEcCCCcH----HHHHHHHHhC----CCceEEEEEcCHHHHHHHHHH
Q psy10572 28 GADISSPHIHAQMLELLKDK----IK-PGARILDIGSGSGY----LTACLAYMAG----PEGRVYGVEHVMELAESSIKN 94 (204)
Q Consensus 28 ~~~~~~~~~~~~~~~~l~~~----~~-~~~~vLdiG~G~G~----~~~~l~~~~~----~~~~v~~vD~~~~~~~~a~~~ 94 (204)
..+.-.++....+.+.+.+. .+ ...+|+..||++|- +++.+.+..+ ...+|+|+|+|..+++.|+.-
T Consensus 69 T~FFR~~~~f~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G 148 (268)
T COG1352 69 TEFFRDPEHFEELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAG 148 (268)
T ss_pred chhccCcHHHHHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcC
Confidence 33444444444444444432 12 35799999999994 6666666663 257999999999999999865
Q ss_pred hhh--cC---cc-------------------ccCccceEEEEecCCCCCCCCCCeeEEEECCCcc--------chhHHHH
Q psy10572 95 IDK--GN---SE-------------------LLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYF--------TIPQKLL 142 (204)
Q Consensus 95 ~~~--~~---~~-------------------~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~--------~~~~~~~ 142 (204)
.-. .. .. ......|.|...|+....+..+.||+|+|-.++- .++..+.
T Consensus 149 ~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~ 228 (268)
T COG1352 149 IYPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFA 228 (268)
T ss_pred CCChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHH
Confidence 411 00 00 0012357777788776553457799999988763 3668889
Q ss_pred HhcCCCcEEEEEe
Q psy10572 143 DQLVPGGRMVMPV 155 (204)
Q Consensus 143 ~~Lk~gG~l~~~~ 155 (204)
..|+|||.|++-.
T Consensus 229 ~~L~~gG~LflG~ 241 (268)
T COG1352 229 DSLKPGGLLFLGH 241 (268)
T ss_pred HHhCCCCEEEEcc
Confidence 9999999999843
|
|
| >KOG1122|consensus | Back alignment and domain information |
|---|
Probab=98.58 E-value=7.5e-07 Score=71.60 Aligned_cols=108 Identities=18% Similarity=0.228 Sum_probs=88.2
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC---CCCCCC
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG---YEREAP 124 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~ 124 (204)
++++.+|||+++.+|.-+.+++......+.+++.|.+...++..+.++.. ++..+..+...|..+. .++. +
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~r-----lGv~ntiv~n~D~~ef~~~~~~~-~ 312 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHR-----LGVTNTIVSNYDGREFPEKEFPG-S 312 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHH-----hCCCceEEEccCcccccccccCc-c
Confidence 58899999999999999999988887778999999999999999999877 3466777888886532 2333 8
Q ss_pred eeEEEECCCccc----------------------------hhHHHHHhcCCCcEEEEEecCCCCc
Q psy10572 125 YDIIHVSPSYFT----------------------------IPQKLLDQLVPGGRMVMPVGEPFKG 161 (204)
Q Consensus 125 ~D~v~~~~~~~~----------------------------~~~~~~~~Lk~gG~l~~~~~~~~~~ 161 (204)
||.|..++++.. ++..+...+++||+|+.++++-..+
T Consensus 313 fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ 377 (460)
T KOG1122|consen 313 FDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVE 377 (460)
T ss_pred cceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchh
Confidence 999999988743 3356778899999999998877644
|
|
| >KOG2940|consensus | Back alignment and domain information |
|---|
Probab=98.56 E-value=6.6e-08 Score=71.76 Aligned_cols=107 Identities=16% Similarity=0.062 Sum_probs=83.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEE
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDII 128 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 128 (204)
+.-..++||||+-|.+...+.... -.+++-+|.|-.|++.++..- ++ .-.+....+|-....+.++++|+|
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~--vekli~~DtS~~M~~s~~~~q-dp------~i~~~~~v~DEE~Ldf~ens~DLi 141 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEG--VEKLIMMDTSYDMIKSCRDAQ-DP------SIETSYFVGDEEFLDFKENSVDLI 141 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcc--hhheeeeecchHHHHHhhccC-CC------ceEEEEEecchhcccccccchhhh
Confidence 455689999999999999887764 248999999999999997542 11 113445567766666888999999
Q ss_pred EECCCccc------hhHHHHHhcCCCcEEEEEecCCCCcceE
Q psy10572 129 HVSPSYFT------IPQKLLDQLVPGGRMVMPVGEPFKGQNL 164 (204)
Q Consensus 129 ~~~~~~~~------~~~~~~~~Lk~gG~l~~~~~~~~~~~~~ 164 (204)
++...++| ...++...|||+|.++.+...++...++
T Consensus 142 isSlslHW~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyEL 183 (325)
T KOG2940|consen 142 ISSLSLHWTNDLPGSMIQCKLALKPDGLFIASMLGGDTLYEL 183 (325)
T ss_pred hhhhhhhhhccCchHHHHHHHhcCCCccchhHHhccccHHHH
Confidence 99988876 3468889999999999999888766553
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.3e-06 Score=68.64 Aligned_cols=108 Identities=22% Similarity=0.264 Sum_probs=83.5
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhC---C----------------------------Cc-------eEEEEEcCHHHHH
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAG---P----------------------------EG-------RVYGVEHVMELAE 89 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~---~----------------------------~~-------~v~~vD~~~~~~~ 89 (204)
..++..++|--||+|.+.+..+.... | .+ .++|+|+++.+++
T Consensus 189 w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~ 268 (381)
T COG0116 189 WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIE 268 (381)
T ss_pred CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHH
Confidence 46678999999999999998887652 1 11 3779999999999
Q ss_pred HHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEEECCCccc--------------hhHHHHHhcCCCcEEEEEe
Q psy10572 90 SSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFT--------------IPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 90 ~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~--------------~~~~~~~~Lk~gG~l~~~~ 155 (204)
.|+.|+...+ ..+.|+|.++|+.....+.+.+|+||+|+++-. +.+.+.+.++..+..+++.
T Consensus 269 ~Ak~NA~~AG----v~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt 344 (381)
T COG0116 269 GAKANARAAG----VGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTT 344 (381)
T ss_pred HHHHHHHhcC----CCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEc
Confidence 9999998755 246799999997755433368999999999843 2246668888888888876
Q ss_pred cCCC
Q psy10572 156 GEPF 159 (204)
Q Consensus 156 ~~~~ 159 (204)
....
T Consensus 345 ~e~~ 348 (381)
T COG0116 345 SEDL 348 (381)
T ss_pred cHHH
Confidence 6554
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=3e-06 Score=74.41 Aligned_cols=122 Identities=20% Similarity=0.202 Sum_probs=84.5
Q ss_pred ChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhC---------------------------------------
Q psy10572 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAG--------------------------------------- 73 (204)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--------------------------------------- 73 (204)
.+.+.+.++.... ...++..++|.+||+|.+.+..+....
T Consensus 174 ~etlAaa~l~~a~-w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~ 252 (702)
T PRK11783 174 KENLAAAILLRSG-WPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGL 252 (702)
T ss_pred cHHHHHHHHHHcC-CCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcc
Confidence 4445555554332 125678999999999999988865310
Q ss_pred --CCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCC--CCCeeEEEECCCccchh----------H
Q psy10572 74 --PEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYER--EAPYDIIHVSPSYFTIP----------Q 139 (204)
Q Consensus 74 --~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~D~v~~~~~~~~~~----------~ 139 (204)
...+++|+|+++.+++.|+.|+...+. ...+.+.++|+.....+ .+++|+|++|+++..-. .
T Consensus 253 ~~~~~~i~G~Did~~av~~A~~N~~~~g~----~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~ 328 (702)
T PRK11783 253 AELPSKFYGSDIDPRVIQAARKNARRAGV----AELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYS 328 (702)
T ss_pred cccCceEEEEECCHHHHHHHHHHHHHcCC----CcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHH
Confidence 113699999999999999999988651 24688999998754332 24699999999984311 1
Q ss_pred H---HHHhcCCCcEEEEEecCCC
Q psy10572 140 K---LLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 140 ~---~~~~Lk~gG~l~~~~~~~~ 159 (204)
. ..+...+|+.+++.++...
T Consensus 329 ~lg~~lk~~~~g~~~~llt~~~~ 351 (702)
T PRK11783 329 QLGRRLKQQFGGWNAALFSSSPE 351 (702)
T ss_pred HHHHHHHHhCCCCeEEEEeCCHH
Confidence 2 2333448999988776554
|
|
| >KOG2187|consensus | Back alignment and domain information |
|---|
Probab=98.54 E-value=4.7e-07 Score=74.49 Aligned_cols=132 Identities=17% Similarity=0.166 Sum_probs=86.4
Q ss_pred ccccccccCCcccCCh-HHHHHHHHHHhcc--CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHh
Q psy10572 19 RIKSRQIGYGADISSP-HIHAQMLELLKDK--IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNI 95 (204)
Q Consensus 19 ~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~ 95 (204)
.+..+.+..+.+.... ...+.+...+.+. ++.+..++|++||+|.++..+++... +|+|+|+++..+..|+.++
T Consensus 349 ~~ltF~iSp~AFFQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~---~ViGvEi~~~aV~dA~~nA 425 (534)
T KOG2187|consen 349 LGLTFRISPGAFFQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVK---RVIGVEISPDAVEDAEKNA 425 (534)
T ss_pred CCeEEEECCchhhccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcccc---ceeeeecChhhcchhhhcc
Confidence 4445555555555333 2333333333332 57889999999999999999999774 9999999999999999999
Q ss_pred hhcCccccCccceEEEEecCCCCC---CCC--CCee-EEEECCCccc----hhHHHHHhcCCCcEEEEEecCC
Q psy10572 96 DKGNSELLDQGRVQFVVWNGKHGY---ERE--APYD-IIHVSPSYFT----IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~d~~~~~---~~~--~~~D-~v~~~~~~~~----~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
..++ ..|.+|+.+-..+.. ... .+-+ +++++++-.. +++.+.++-++-=.++++|...
T Consensus 426 ~~Ng-----isNa~Fi~gqaE~~~~sl~~~~~~~~~~v~iiDPpR~Glh~~~ik~l~~~~~~~rlvyvSCn~~ 493 (534)
T KOG2187|consen 426 QING-----ISNATFIVGQAEDLFPSLLTPCCDSETLVAIIDPPRKGLHMKVIKALRAYKNPRRLVYVSCNPH 493 (534)
T ss_pred hhcC-----ccceeeeecchhhccchhcccCCCCCceEEEECCCcccccHHHHHHHHhccCccceEEEEcCHH
Confidence 8865 579999999434322 111 2345 5666665443 2333444434666666666433
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.1e-06 Score=65.65 Aligned_cols=97 Identities=23% Similarity=0.231 Sum_probs=78.0
Q ss_pred CCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCC-eeEEE
Q psy10572 51 GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAP-YDIIH 129 (204)
Q Consensus 51 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~D~v~ 129 (204)
+.+++|||+|.|.-++.++-.. |+.+++-+|.....+...+..... ++.+|++++++.+.+.... .. ||+|.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~-p~~~vtLles~~Kk~~FL~~~~~e-----L~L~nv~i~~~RaE~~~~~-~~~~D~vt 140 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAF-PDLKVTLLESLGKKIAFLREVKKE-----LGLENVEIVHGRAEEFGQE-KKQYDVVT 140 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhc-cCCcEEEEccCchHHHHHHHHHHH-----hCCCCeEEehhhHhhcccc-cccCcEEE
Confidence 5899999999999999988665 777899999998888888777666 4578999999987655432 23 99999
Q ss_pred ECCCc--cchhHHHHHhcCCCcEEEEE
Q psy10572 130 VSPSY--FTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 130 ~~~~~--~~~~~~~~~~Lk~gG~l~~~ 154 (204)
+.+.. ..+.+-+..++++||.+++-
T Consensus 141 sRAva~L~~l~e~~~pllk~~g~~~~~ 167 (215)
T COG0357 141 SRAVASLNVLLELCLPLLKVGGGFLAY 167 (215)
T ss_pred eehccchHHHHHHHHHhcccCCcchhh
Confidence 97654 45778899999999987653
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=98.51 E-value=4.7e-06 Score=62.01 Aligned_cols=115 Identities=23% Similarity=0.355 Sum_probs=79.0
Q ss_pred HHHHHHHHHHh-ccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe
Q psy10572 35 HIHAQMLELLK-DKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW 113 (204)
Q Consensus 35 ~~~~~~~~~l~-~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 113 (204)
.+.+.++..+. -.++++.+||-+|+.+|....+++...++++.|+++|.++......-..++. -+|+--+-.
T Consensus 57 KLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~-------R~NIiPIl~ 129 (229)
T PF01269_consen 57 KLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK-------RPNIIPILE 129 (229)
T ss_dssp HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH-------STTEEEEES
T ss_pred HHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc-------CCceeeeec
Confidence 34444443333 2368899999999999999999999998889999999999765555444433 257888888
Q ss_pred cCCCCC---CCCCCeeEEEECCCccc----hhHHHHHhcCCCcEEEEEec
Q psy10572 114 NGKHGY---EREAPYDIIHVSPSYFT----IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 114 d~~~~~---~~~~~~D~v~~~~~~~~----~~~~~~~~Lk~gG~l~~~~~ 156 (204)
|+.... .--+..|+|+.+-..++ +...+...||+||.+++.+-
T Consensus 130 DAr~P~~Y~~lv~~VDvI~~DVaQp~Qa~I~~~Na~~fLk~gG~~~i~iK 179 (229)
T PF01269_consen 130 DARHPEKYRMLVEMVDVIFQDVAQPDQARIAALNARHFLKPGGHLIISIK 179 (229)
T ss_dssp -TTSGGGGTTTS--EEEEEEE-SSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCCChHHhhcccccccEEEecCCChHHHHHHHHHHHhhccCCcEEEEEEe
Confidence 876321 11247999999877665 44677789999999999774
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >KOG3115|consensus | Back alignment and domain information |
|---|
Probab=98.49 E-value=7.3e-07 Score=65.00 Aligned_cols=147 Identities=12% Similarity=0.114 Sum_probs=94.1
Q ss_pred cccccccccc-CCccccccccccCCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEc
Q psy10572 5 DRKNFFTRVV-NEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEH 83 (204)
Q Consensus 5 ~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~ 83 (204)
|..+|...+. +.++.|..+..+....-+ ++....-+... ..++.-.+.|||||-|.+...++..+ |+..++|.|+
T Consensus 17 pqKr~YRQRAHsNP~sDh~l~yPvsP~~m--DWS~~yp~f~~-~~~~kvefaDIGCGyGGLlv~Lsp~f-PdtLiLGmEI 92 (249)
T KOG3115|consen 17 PQKRYYRQRAHSNPLSDHTLEYPVSPQEM--DWSKYYPDFRR-ALNKKVEFADIGCGYGGLLMKLAPKF-PDTLILGMEI 92 (249)
T ss_pred cHHHHHHHHhhcCCCccCcccCCCChHhC--cHHHhhhhhhh-hccccceEEeeccCccchhhhccccC-ccceeeeehh
Confidence 4555555555 777777777655432111 11111222222 13455689999999999999999998 8889999999
Q ss_pred CHHHHHHHHHHhhhcCccc--cCccceEEEEecCCC---CCCCCCCeeEEEECCCccc--------------hhHHHHHh
Q psy10572 84 VMELAESSIKNIDKGNSEL--LDQGRVQFVVWNGKH---GYEREAPYDIIHVSPSYFT--------------IPQKLLDQ 144 (204)
Q Consensus 84 ~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~d~~~---~~~~~~~~D~v~~~~~~~~--------------~~~~~~~~ 144 (204)
--...+..+.++.+-.... -..+|+.+.+.+... ..+..+..+-.+...+.++ ++.+...+
T Consensus 93 R~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLskmff~fpdpHfk~~khk~rii~~~l~~eyay~ 172 (249)
T KOG3115|consen 93 RDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYV 172 (249)
T ss_pred hHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccccceeecCChhHhhhhccceeechhHHHHHHhh
Confidence 8888888888876521110 124678888877653 3344455554544444433 45677889
Q ss_pred cCCCcEEEEEe
Q psy10572 145 LVPGGRMVMPV 155 (204)
Q Consensus 145 Lk~gG~l~~~~ 155 (204)
|++||.++..+
T Consensus 173 l~~gg~~ytit 183 (249)
T KOG3115|consen 173 LREGGILYTIT 183 (249)
T ss_pred hhcCceEEEEe
Confidence 99999998855
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.6e-06 Score=64.70 Aligned_cols=116 Identities=21% Similarity=0.283 Sum_probs=66.7
Q ss_pred HHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCc----cccCccceEE
Q psy10572 35 HIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNS----ELLDQGRVQF 110 (204)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~~~~~~~~ 110 (204)
.....+++.+. +.++...+|+|||.|.....++... +-.+.+|||+.+...+.|......... .......+++
T Consensus 29 ~~~~~il~~~~--l~~~dvF~DlGSG~G~~v~~aal~~-~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l 105 (205)
T PF08123_consen 29 EFVSKILDELN--LTPDDVFYDLGSGVGNVVFQAALQT-GCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVEL 105 (205)
T ss_dssp HHHHHHHHHTT----TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEE
T ss_pred HHHHHHHHHhC--CCCCCEEEECCCCCCHHHHHHHHHc-CCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhccccccee
Confidence 44555566555 6888999999999999988887765 333699999999998888765432100 0012357888
Q ss_pred EEecCCCCCCC---CCCeeEEEECCCccc--h---hHHHHHhcCCCcEEEE
Q psy10572 111 VVWNGKHGYER---EAPYDIIHVSPSYFT--I---PQKLLDQLVPGGRMVM 153 (204)
Q Consensus 111 ~~~d~~~~~~~---~~~~D~v~~~~~~~~--~---~~~~~~~Lk~gG~l~~ 153 (204)
.++|+...... -...|+|++|..... + +.+....||+|.+++.
T Consensus 106 ~~gdfl~~~~~~~~~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 106 IHGDFLDPDFVKDIWSDADVVFVNNTCFDPDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp ECS-TTTHHHHHHHGHC-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEEE
T ss_pred eccCccccHhHhhhhcCCCEEEEeccccCHHHHHHHHHHHhcCCCCCEEEE
Confidence 88887643211 134799999876533 2 2455567888888765
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.1e-06 Score=68.07 Aligned_cols=120 Identities=18% Similarity=0.169 Sum_probs=87.5
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHh--hhcCccccCccceEEEEecCCCCCC-CCCCe
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNI--DKGNSELLDQGRVQFVVWNGKHGYE-REAPY 125 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~ 125 (204)
+...+||-+|.|.|.....+.+.- .-.+++-+|++|.+++.++.+. .+........++++++..|+.+... ....|
T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP-~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKYP-QVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhCC-CcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 566799999999999999999873 2569999999999999999554 3322222456789999999765332 23589
Q ss_pred eEEEECCCccch-----------hHHHHHhcCCCcEEEEEecCCCCc-ceEEEEee
Q psy10572 126 DIIHVSPSYFTI-----------PQKLLDQLVPGGRMVMPVGEPFKG-QNLTIIDK 169 (204)
Q Consensus 126 D~v~~~~~~~~~-----------~~~~~~~Lk~gG~l~~~~~~~~~~-~~~~~~~~ 169 (204)
|.||.+.+.+.. -..+.+.|+++|++++.-.+.... ...+++.+
T Consensus 367 D~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~vfw~i~a 422 (508)
T COG4262 367 DVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPRVFWRIDA 422 (508)
T ss_pred cEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCCceeeeehh
Confidence 999998766542 256779999999999977665532 33444443
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.6e-06 Score=64.96 Aligned_cols=117 Identities=16% Similarity=0.077 Sum_probs=85.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCC-CceEEEEEcCHHHHHHHHHHhhhcCccccCccce-EEEEecCCCCC--CC-CC
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGP-EGRVYGVEHVMELAESSIKNIDKGNSELLDQGRV-QFVVWNGKHGY--ER-EA 123 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~d~~~~~--~~-~~ 123 (204)
....+|+||.||.|..........+. ...+.-.|.++..++..++.++..+ ..++ +|.++|+.+.. .. ..
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~g-----L~~i~~f~~~dAfd~~~l~~l~p 208 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERG-----LEDIARFEQGDAFDRDSLAALDP 208 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcC-----CccceEEEecCCCCHhHhhccCC
Confidence 45679999999999998888777632 2588889999999999999998754 4444 99999987531 11 23
Q ss_pred CeeEEEECCCccc---------hhHHHHHhcCCCcEEEEEe--cCCCCcceEEEEeec
Q psy10572 124 PYDIIHVSPSYFT---------IPQKLLDQLVPGGRMVMPV--GEPFKGQNLTIIDKL 170 (204)
Q Consensus 124 ~~D~v~~~~~~~~---------~~~~~~~~Lk~gG~l~~~~--~~~~~~~~~~~~~~~ 170 (204)
..+++++...+.- .+..+..++.|||.++.+- |+++.+.....+..+
T Consensus 209 ~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsH 266 (311)
T PF12147_consen 209 APTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSH 266 (311)
T ss_pred CCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcc
Confidence 4788887766543 3456778999999999987 566544444444443
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.1e-06 Score=64.36 Aligned_cols=94 Identities=23% Similarity=0.262 Sum_probs=61.0
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCC--------CCCCC
Q psy10572 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGK--------HGYER 121 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~--------~~~~~ 121 (204)
.+.++||+||++|.++..+.++.++.+.++|+|+.+.. ..+++..+.+|.. .....
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~----------------~~~~~~~i~~d~~~~~~~~~i~~~~~ 86 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD----------------PLQNVSFIQGDITNPENIKDIRKLLP 86 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG----------------S-TTEEBTTGGGEEEEHSHHGGGSHG
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccc----------------cccceeeeecccchhhHHHhhhhhcc
Confidence 34899999999999999999987456799999998760 0123444444432 11111
Q ss_pred --CCCeeEEEECCCcc--------c---------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 122 --EAPYDIIHVSPSYF--------T---------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 122 --~~~~D~v~~~~~~~--------~---------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
..++|+|+++.... + .+.-+...|+|||.+++.+....
T Consensus 87 ~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~ 143 (181)
T PF01728_consen 87 ESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGP 143 (181)
T ss_dssp TTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSST
T ss_pred ccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCc
Confidence 26899999987321 1 12355577999999999887754
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >KOG4589|consensus | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.3e-06 Score=61.65 Aligned_cols=99 Identities=17% Similarity=0.205 Sum_probs=69.9
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe-cCCCC-------
Q psy10572 47 KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW-NGKHG------- 118 (204)
Q Consensus 47 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-d~~~~------- 118 (204)
+++|+.+|||+||.+|.++....+..+|.+.|.|||+-... ..+.+.++.+ |+.+.
T Consensus 66 ~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~----------------p~~Ga~~i~~~dvtdp~~~~ki~ 129 (232)
T KOG4589|consen 66 FLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE----------------PPEGATIIQGNDVTDPETYRKIF 129 (232)
T ss_pred ccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc----------------CCCCcccccccccCCHHHHHHHH
Confidence 35899999999999999999999998889999999974321 1234555555 43321
Q ss_pred -CCCCCCeeEEEECCCc--------cc---------hhHHHHHhcCCCcEEEEEecCCCCc
Q psy10572 119 -YEREAPYDIIHVSPSY--------FT---------IPQKLLDQLVPGGRMVMPVGEPFKG 161 (204)
Q Consensus 119 -~~~~~~~D~v~~~~~~--------~~---------~~~~~~~~Lk~gG~l~~~~~~~~~~ 161 (204)
..++.+.|+|+++-.- .| .+.-+...++|+|.+++.+|.+...
T Consensus 130 e~lp~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~ 190 (232)
T KOG4589|consen 130 EALPNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSEE 190 (232)
T ss_pred HhCCCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCch
Confidence 1355789999886322 11 1123346689999999999988744
|
|
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.42 E-value=7.9e-06 Score=63.37 Aligned_cols=90 Identities=21% Similarity=0.197 Sum_probs=72.0
Q ss_pred hHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe
Q psy10572 34 PHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW 113 (204)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 113 (204)
+-+...+++.+. ++++...+|..-|.|+.+..+.+.+++.++++|+|.++.+++.|++.+.... +++.+++.
T Consensus 9 pVLl~E~i~~L~--~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~------~r~~~v~~ 80 (314)
T COG0275 9 PVLLNEVVELLA--PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD------GRVTLVHG 80 (314)
T ss_pred chHHHHHHHhcc--cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC------CcEEEEeC
Confidence 446777888887 7888999999999999999999998666789999999999999999987633 58999998
Q ss_pred cCCCCC-----CCCCCeeEEEEC
Q psy10572 114 NGKHGY-----EREAPYDIIHVS 131 (204)
Q Consensus 114 d~~~~~-----~~~~~~D~v~~~ 131 (204)
++.... ...+.+|-|+.+
T Consensus 81 ~F~~l~~~l~~~~i~~vDGiL~D 103 (314)
T COG0275 81 NFANLAEALKELGIGKVDGILLD 103 (314)
T ss_pred cHHHHHHHHHhcCCCceeEEEEe
Confidence 865211 123567877665
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.9e-06 Score=66.74 Aligned_cols=93 Identities=19% Similarity=0.176 Sum_probs=73.4
Q ss_pred ChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEE
Q psy10572 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVV 112 (204)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 112 (204)
.|-+...+++.+. +.++..++|..+|.|..+..+++.+ +.++++|+|.++.+++.+++++... ..++.+++
T Consensus 5 ~pVll~Evl~~L~--~~~ggiyVD~TlG~GGHS~~iL~~l-~~g~vigiD~D~~Al~~ak~~L~~~------~~R~~~i~ 75 (305)
T TIGR00006 5 QSVLLDEVVEGLN--IKPDGIYIDCTLGFGGHSKAILEQL-GTGRLIGIDRDPQAIAFAKERLSDF------EGRVVLIH 75 (305)
T ss_pred cchhHHHHHHhcC--cCCCCEEEEeCCCChHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHHHhhc------CCcEEEEe
Confidence 3456777888776 6788899999999999999999987 3589999999999999999987653 25799999
Q ss_pred ecCCCCC-----CCCCCeeEEEECCCc
Q psy10572 113 WNGKHGY-----EREAPYDIIHVSPSY 134 (204)
Q Consensus 113 ~d~~~~~-----~~~~~~D~v~~~~~~ 134 (204)
+++.... ....++|.|+++.+.
T Consensus 76 ~nF~~l~~~l~~~~~~~vDgIl~DLGv 102 (305)
T TIGR00006 76 DNFANFFEHLDELLVTKIDGILVDLGV 102 (305)
T ss_pred CCHHHHHHHHHhcCCCcccEEEEeccC
Confidence 9876321 122569999887544
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.39 E-value=7.7e-06 Score=68.92 Aligned_cols=128 Identities=20% Similarity=0.208 Sum_probs=96.4
Q ss_pred CcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCC---CceEEEEEcCHHHHHHHHHHhhhcCccccC
Q psy10572 28 GADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGP---EGRVYGVEHVMELAESSIKNIDKGNSELLD 104 (204)
Q Consensus 28 ~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~ 104 (204)
|.+++++++...+++.+. +.+..+|+|..||+|.+.....+.+.. ...++|.|.++.....++.+.-.++. .
T Consensus 166 GEfyTP~~v~~liv~~l~--~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi---~ 240 (489)
T COG0286 166 GEFYTPREVSELIVELLD--PEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGI---E 240 (489)
T ss_pred CccCChHHHHHHHHHHcC--CCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCC---C
Confidence 788999999999999998 466779999999999988777776632 36799999999999999999877552 1
Q ss_pred ccceEEEEecCCCCC-C----CCCCeeEEEECCCccc-------------------------------hhHHHHHhcCCC
Q psy10572 105 QGRVQFVVWNGKHGY-E----REAPYDIIHVSPSYFT-------------------------------IPQKLLDQLVPG 148 (204)
Q Consensus 105 ~~~~~~~~~d~~~~~-~----~~~~~D~v~~~~~~~~-------------------------------~~~~~~~~Lk~g 148 (204)
. ++...++|-...+ . ..+.||.|++|+++.. +++.+...|+||
T Consensus 241 ~-~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~ 319 (489)
T COG0286 241 G-DANIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPG 319 (489)
T ss_pred c-cccccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCC
Confidence 1 3455555544322 1 3367999999988730 236788999999
Q ss_pred cEEEEEecCCCCc
Q psy10572 149 GRMVMPVGEPFKG 161 (204)
Q Consensus 149 G~l~~~~~~~~~~ 161 (204)
|+..+.++.+...
T Consensus 320 g~aaivl~~gvlf 332 (489)
T COG0286 320 GRAAIVLPDGVLF 332 (489)
T ss_pred ceEEEEecCCcCc
Confidence 9888877776533
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.8e-05 Score=62.96 Aligned_cols=115 Identities=13% Similarity=0.144 Sum_probs=77.2
Q ss_pred HHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhC---CCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEE--E
Q psy10572 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAG---PEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQF--V 111 (204)
Q Consensus 37 ~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~ 111 (204)
.......+...+.++..++|+|||+|.-+..+...+. ....++++|+|...++.+..++... ..+.+++ +
T Consensus 63 L~~~~~~Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~-----~~p~l~v~~l 137 (319)
T TIGR03439 63 LKKHSSDIAASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLG-----NFSHVRCAGL 137 (319)
T ss_pred HHHHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhc-----cCCCeEEEEE
Confidence 3333444444567788999999999999888877663 2357999999999999999988721 1245555 7
Q ss_pred EecCCCCC--CC----CCCeeEEEECC-Ccc--------chhHHHHH-hcCCCcEEEEEec
Q psy10572 112 VWNGKHGY--ER----EAPYDIIHVSP-SYF--------TIPQKLLD-QLVPGGRMVMPVG 156 (204)
Q Consensus 112 ~~d~~~~~--~~----~~~~D~v~~~~-~~~--------~~~~~~~~-~Lk~gG~l~~~~~ 156 (204)
.+|..... .+ .....+++..+ .+. .+++.+.+ .|+|||.+++.+-
T Consensus 138 ~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D 198 (319)
T TIGR03439 138 LGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLD 198 (319)
T ss_pred EecHHHHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecC
Confidence 77764321 11 12345554433 222 25578888 9999999999654
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=9.8e-07 Score=63.63 Aligned_cols=92 Identities=20% Similarity=0.183 Sum_probs=73.4
Q ss_pred CCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEEE
Q psy10572 51 GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHV 130 (204)
Q Consensus 51 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 130 (204)
...+.|+|+|+|.++...++... +|+++|.+|.....|.+|+..+ +..|++++.+|+....+ ...|+|+|
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~A~---rViAiE~dPk~a~~a~eN~~v~-----g~~n~evv~gDA~~y~f--e~ADvvic 102 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHAAE---RVIAIEKDPKRARLAEENLHVP-----GDVNWEVVVGDARDYDF--ENADVVIC 102 (252)
T ss_pred hhceeeccCCcchHHHHHHhhhc---eEEEEecCcHHHHHhhhcCCCC-----CCcceEEEecccccccc--cccceeHH
Confidence 47899999999999999988753 9999999999999999997653 36799999999887777 34788876
Q ss_pred CCCc--------cchhHHHHHhcCCCcEEE
Q psy10572 131 SPSY--------FTIPQKLLDQLVPGGRMV 152 (204)
Q Consensus 131 ~~~~--------~~~~~~~~~~Lk~gG~l~ 152 (204)
-... -.+++.++..||-++.++
T Consensus 103 EmlDTaLi~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 103 EMLDTALIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred HHhhHHhhcccccHHHHHHHHHhhcCCccc
Confidence 4322 124567777888888775
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=98.33 E-value=8.3e-06 Score=57.34 Aligned_cols=107 Identities=27% Similarity=0.359 Sum_probs=71.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHh---CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCe
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMA---GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPY 125 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~---~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 125 (204)
.+...|+|+|||.|+++..++..+ .+..+|+++|.++...+.+..+.+..... ...++.+..++..... .....
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~ 100 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSD--LEKRLSFIQGDIADES-SSDPP 100 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcch--hhccchhhccchhhhc-ccCCC
Confidence 567799999999999999999843 24579999999999999998887663310 0135555555543321 23567
Q ss_pred eEEEECCCccchhHHHHHh-cCCCcEEEEEecCC
Q psy10572 126 DIIHVSPSYFTIPQKLLDQ-LVPGGRMVMPVGEP 158 (204)
Q Consensus 126 D~v~~~~~~~~~~~~~~~~-Lk~gG~l~~~~~~~ 158 (204)
++++.-.....+...+.+. .+++-..++.++-.
T Consensus 101 ~~~vgLHaCG~Ls~~~l~~~~~~~~~~l~~vpCC 134 (141)
T PF13679_consen 101 DILVGLHACGDLSDRALRLFIRPNARFLVLVPCC 134 (141)
T ss_pred eEEEEeecccchHHHHHHHHHHcCCCEEEEcCCc
Confidence 7887766665554433332 34666666555544
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=98.30 E-value=6.5e-06 Score=61.37 Aligned_cols=76 Identities=21% Similarity=0.218 Sum_probs=56.8
Q ss_pred EEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEEECCC
Q psy10572 54 ILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPS 133 (204)
Q Consensus 54 vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~ 133 (204)
|.||||.-|+++.+|.+.. ...+++++|+++..++.|+.++...+ ...+++++.+|......+.+..|.|++.++
T Consensus 1 vaDIGtDHgyLpi~L~~~~-~~~~~ia~DI~~gpL~~A~~~i~~~~----l~~~i~~rlgdGL~~l~~~e~~d~ivIAGM 75 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNG-KAPKAIAVDINPGPLEKAKENIAKYG----LEDRIEVRLGDGLEVLKPGEDVDTIVIAGM 75 (205)
T ss_dssp EEEET-STTHHHHHHHHTT-SEEEEEEEESSHHHHHHHHHHHHHTT-----TTTEEEEE-SGGGG--GGG---EEEEEEE
T ss_pred CceeccchhHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHHcC----CcccEEEEECCcccccCCCCCCCEEEEecC
Confidence 6899999999999999986 45589999999999999999998855 246899999998876655444788876654
Q ss_pred c
Q psy10572 134 Y 134 (204)
Q Consensus 134 ~ 134 (204)
-
T Consensus 76 G 76 (205)
T PF04816_consen 76 G 76 (205)
T ss_dssp -
T ss_pred C
Confidence 4
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >KOG3045|consensus | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.9e-06 Score=63.55 Aligned_cols=94 Identities=14% Similarity=0.146 Sum_probs=68.5
Q ss_pred HHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC
Q psy10572 39 QMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG 118 (204)
Q Consensus 39 ~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~ 118 (204)
.+++.+.. ......|-|+|||-+.++. .. ...|+.+|+.+ .+-+++..|+...
T Consensus 170 ~ii~~ik~-r~~~~vIaD~GCGEakiA~---~~---~~kV~SfDL~a--------------------~~~~V~~cDm~~v 222 (325)
T KOG3045|consen 170 VIIRKIKR-RPKNIVIADFGCGEAKIAS---SE---RHKVHSFDLVA--------------------VNERVIACDMRNV 222 (325)
T ss_pred HHHHHHHh-CcCceEEEecccchhhhhh---cc---ccceeeeeeec--------------------CCCceeeccccCC
Confidence 34444441 2345689999999988866 22 23899999643 3567788888888
Q ss_pred CCCCCCeeEEEECCCc-----cchhHHHHHhcCCCcEEEEEecCCC
Q psy10572 119 YEREAPYDIIHVSPSY-----FTIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 119 ~~~~~~~D~v~~~~~~-----~~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
+.++++.|++++...+ .+++.++.++|++||.+++......
T Consensus 223 Pl~d~svDvaV~CLSLMgtn~~df~kEa~RiLk~gG~l~IAEv~SR 268 (325)
T KOG3045|consen 223 PLEDESVDVAVFCLSLMGTNLADFIKEANRILKPGGLLYIAEVKSR 268 (325)
T ss_pred cCccCcccEEEeeHhhhcccHHHHHHHHHHHhccCceEEEEehhhh
Confidence 8888999999776443 4577999999999999999665443
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.2e-05 Score=62.38 Aligned_cols=105 Identities=24% Similarity=0.258 Sum_probs=64.1
Q ss_pred CCEEEEEcCCCcHHH-HHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEE
Q psy10572 51 GARILDIGSGSGYLT-ACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIH 129 (204)
Q Consensus 51 ~~~vLdiG~G~G~~~-~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 129 (204)
..+|+=||||+=-++ +.+++....++.++++|+++.+++.+++.+.... ....++.++.+|......+-..||+|+
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~---~L~~~m~f~~~d~~~~~~dl~~~DvV~ 197 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDL---GLSKRMSFITADVLDVTYDLKEYDVVF 197 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH------HH-SSEEEEES-GGGG-GG----SEEE
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcc---cccCCeEEEecchhccccccccCCEEE
Confidence 359999999985554 5556554456789999999999999998877211 014579999999765544446799999
Q ss_pred ECCCcc-------chhHHHHHhcCCCcEEEEEecCC
Q psy10572 130 VSPSYF-------TIPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 130 ~~~~~~-------~~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
..+... .+++++.+.++||..+++-...+
T Consensus 198 lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~G 233 (276)
T PF03059_consen 198 LAALVGMDAEPKEEILEHLAKHMAPGARLVVRSAHG 233 (276)
T ss_dssp E-TT-S----SHHHHHHHHHHHS-TTSEEEEEE--G
T ss_pred EhhhcccccchHHHHHHHHHhhCCCCcEEEEecchh
Confidence 877654 37899999999999999965444
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=7.4e-06 Score=62.28 Aligned_cols=93 Identities=16% Similarity=0.170 Sum_probs=68.9
Q ss_pred HHHHHHhccCCCCC--EEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhc-CccccCc---cceEEEE
Q psy10572 39 QMLELLKDKIKPGA--RILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKG-NSELLDQ---GRVQFVV 112 (204)
Q Consensus 39 ~~~~~l~~~~~~~~--~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~~~---~~~~~~~ 112 (204)
.+++.+. ++++. +|||..+|.|..+..++.+. +.|+++|.++......+.++... ....+.. .++++++
T Consensus 77 ~l~kAvg--lk~g~~p~VLD~TAGlG~Da~~las~G---~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~ 151 (250)
T PRK10742 77 AVAKAVG--IKGDYLPDVVDATAGLGRDAFVLASVG---CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH 151 (250)
T ss_pred HHHHHhC--CCCCCCCEEEECCCCccHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEe
Confidence 4455554 56766 99999999999999999864 48999999999999988887762 1011111 5789999
Q ss_pred ecCCCCCC-CCCCeeEEEECCCccc
Q psy10572 113 WNGKHGYE-REAPYDIIHVSPSYFT 136 (204)
Q Consensus 113 ~d~~~~~~-~~~~~D~v~~~~~~~~ 136 (204)
+|...... ...+||+|++++++++
T Consensus 152 ~da~~~L~~~~~~fDVVYlDPMfp~ 176 (250)
T PRK10742 152 ASSLTALTDITPRPQVVYLDPMFPH 176 (250)
T ss_pred CcHHHHHhhCCCCCcEEEECCCCCC
Confidence 98764332 1236999999999976
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.1e-05 Score=59.79 Aligned_cols=83 Identities=33% Similarity=0.360 Sum_probs=68.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
++.+..+.||||--++++.++.+.. +...+++.|+++..++.|.+++.++. ..+.+++..+|.......+..+|+
T Consensus 14 V~~~~~iaDIGsDHAYLp~~Lv~~~-~~~~~va~eV~~gpl~~a~~~v~~~~----l~~~i~vr~~dgl~~l~~~d~~d~ 88 (226)
T COG2384 14 VKQGARIADIGSDHAYLPIYLVKNN-PASTAVAGEVVPGPLESAIRNVKKNN----LSERIDVRLGDGLAVLELEDEIDV 88 (226)
T ss_pred HHcCCceeeccCchhHhHHHHHhcC-CcceEEEeecccCHHHHHHHHHHhcC----CcceEEEeccCCccccCccCCcCE
Confidence 4566679999999999999999987 66789999999999999999998865 356899999998766555557998
Q ss_pred EEECCCcc
Q psy10572 128 IHVSPSYF 135 (204)
Q Consensus 128 v~~~~~~~ 135 (204)
+++.++-.
T Consensus 89 ivIAGMGG 96 (226)
T COG2384 89 IVIAGMGG 96 (226)
T ss_pred EEEeCCcH
Confidence 87765543
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=98.17 E-value=9.7e-06 Score=56.91 Aligned_cols=58 Identities=22% Similarity=0.241 Sum_probs=48.4
Q ss_pred EEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCC
Q psy10572 53 RILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGK 116 (204)
Q Consensus 53 ~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~ 116 (204)
.++|+|||.|..+..+++.. +.++++++|+++.+.+.++++++.+. .+++.++...+.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~-~~~~v~~~E~~~~~~~~l~~~~~~n~-----~~~v~~~~~al~ 58 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKG-AEGRVIAFEPLPDAYEILEENVKLNN-----LPNVVLLNAAVG 58 (143)
T ss_pred CEEEccCCccHHHHHHHHhC-CCCEEEEEecCHHHHHHHHHHHHHcC-----CCcEEEEEeeee
Confidence 48999999999999999886 66789999999999999999987743 245777776644
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=98.17 E-value=3.7e-06 Score=69.36 Aligned_cols=91 Identities=18% Similarity=0.224 Sum_probs=59.6
Q ss_pred CEEEEEcCCCcHHHHHHHHHhCCCceEEEE-----EcCHHHHHHHHHHhhhcCccccCccceEEEEec--CCCCCCCCCC
Q psy10572 52 ARILDIGSGSGYLTACLAYMAGPEGRVYGV-----EHVMELAESSIKNIDKGNSELLDQGRVQFVVWN--GKHGYEREAP 124 (204)
Q Consensus 52 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~v-----D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d--~~~~~~~~~~ 124 (204)
..+||+|||+|.++.++..+. |+.+ |..+..++.|-++ .+..+.+- -...+++.+.
T Consensus 119 R~~LDvGcG~aSF~a~l~~r~-----V~t~s~a~~d~~~~qvqfaleR------------Gvpa~~~~~~s~rLPfp~~~ 181 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLERN-----VTTMSFAPNDEHEAQVQFALER------------GVPAMIGVLGSQRLPFPSNA 181 (506)
T ss_pred EEEEeccceeehhHHHHhhCC-----ceEEEcccccCCchhhhhhhhc------------CcchhhhhhccccccCCccc
Confidence 479999999999999998863 3333 3333444444332 12222211 1345577789
Q ss_pred eeEEEECCCccc-------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 125 YDIIHVSPSYFT-------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 125 ~D~v~~~~~~~~-------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
||+|.|...... ++-++-++|+|||+++.+-+.-.
T Consensus 182 fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 182 FDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred hhhhhcccccccchhcccceeehhhhhhccCceEEecCCccc
Confidence 999988765533 34578899999999999776543
|
; GO: 0008168 methyltransferase activity |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.16 E-value=1e-05 Score=58.82 Aligned_cols=99 Identities=18% Similarity=0.225 Sum_probs=74.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEE
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDII 128 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 128 (204)
-.+++|||+|+|+|..++..++... ..++..|+.+......+-|.+.|+ -++.+...|... ++..+|++
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~aGA--~~v~a~d~~P~~~~ai~lNa~ang------v~i~~~~~d~~g---~~~~~Dl~ 146 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARAGA--AEVVAADIDPWLEQAIRLNAAANG------VSILFTHADLIG---SPPAFDLL 146 (218)
T ss_pred cccceeeecccccChHHHHHHHhhh--HHHHhcCCChHHHHHhhcchhhcc------ceeEEeeccccC---CCcceeEE
Confidence 4678999999999999999988753 488999999999888888887755 578888888665 34679999
Q ss_pred EECCCccc-----hhHHHHHhcCCCcEEEEEecCC
Q psy10572 129 HVSPSYFT-----IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 129 ~~~~~~~~-----~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
+....+.. .+-.+...|+..|..++.-.+.
T Consensus 147 LagDlfy~~~~a~~l~~~~~~l~~~g~~vlvgdp~ 181 (218)
T COG3897 147 LAGDLFYNHTEADRLIPWKDRLAEAGAAVLVGDPG 181 (218)
T ss_pred EeeceecCchHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 88766543 2233667777777776644333
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.11 E-value=4.6e-05 Score=59.73 Aligned_cols=87 Identities=16% Similarity=0.234 Sum_probs=49.0
Q ss_pred CCEEEEEcCCCc-HHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCC----CCC-CCCCC
Q psy10572 51 GARILDIGSGSG-YLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGK----HGY-EREAP 124 (204)
Q Consensus 51 ~~~vLdiG~G~G-~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~----~~~-~~~~~ 124 (204)
..++||||||.. ...+..++.. +.+.+|.|+++..++.|++++..+. ....+|+++...-. ... .+.+.
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~--~W~fvaTdID~~sl~~A~~nv~~N~---~L~~~I~l~~~~~~~~i~~~i~~~~e~ 177 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY--GWSFVATDIDPKSLESARENVERNP---NLESRIELRKQKNPDNIFDGIIQPNER 177 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHHT----T-TTTEEEEE--ST-SSTTTSTT--S-
T ss_pred ceEeecCCccHHHHHHHHhhhhc--CCeEEEecCCHHHHHHHHHHHHhcc---ccccceEEEEcCCccccchhhhcccce
Confidence 458999999975 4455555554 3599999999999999999999862 13467888765422 211 22367
Q ss_pred eeEEEECCCccchhHHHH
Q psy10572 125 YDIIHVSPSYFTIPQKLL 142 (204)
Q Consensus 125 ~D~v~~~~~~~~~~~~~~ 142 (204)
||+.+||++++...+++.
T Consensus 178 ~dftmCNPPFy~s~~e~~ 195 (299)
T PF05971_consen 178 FDFTMCNPPFYSSQEEAE 195 (299)
T ss_dssp EEEEEE-----SS-----
T ss_pred eeEEecCCccccChhhhc
Confidence 999999999987665443
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=98.09 E-value=5.6e-07 Score=60.04 Aligned_cols=95 Identities=28% Similarity=0.405 Sum_probs=38.4
Q ss_pred EEEcCCCcHHHHHHHHHhCCCc--eEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC--CCCCCeeEEEE
Q psy10572 55 LDIGSGSGYLTACLAYMAGPEG--RVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY--EREAPYDIIHV 130 (204)
Q Consensus 55 LdiG~G~G~~~~~l~~~~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~v~~ 130 (204)
||+|+..|..+..+++.+.+.. +++++|..+. .+.+++.++... ...+++++.++..+.. .+..++|++++
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~----~~~~~~~~~g~s~~~l~~~~~~~~dli~i 75 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAG----LSDRVEFIQGDSPDFLPSLPDGPIDLIFI 75 (106)
T ss_dssp --------------------------EEEESS-------------GG----G-BTEEEEES-THHHHHHHHH--EEEEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcC----CCCeEEEEEcCcHHHHHHcCCCCEEEEEE
Confidence 6899999999999988774433 7999999995 222233322211 1357999999965321 11368999999
Q ss_pred CCCcc-----chhHHHHHhcCCCcEEEEE
Q psy10572 131 SPSYF-----TIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 131 ~~~~~-----~~~~~~~~~Lk~gG~l~~~ 154 (204)
+..-. .-++.+.+.|+|||++++.
T Consensus 76 Dg~H~~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 76 DGDHSYEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp ES---HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 98632 2447788899999999873
|
|
| >KOG2198|consensus | Back alignment and domain information |
|---|
Probab=98.06 E-value=4.3e-05 Score=60.87 Aligned_cols=109 Identities=19% Similarity=0.181 Sum_probs=78.3
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCC---CceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC------
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGP---EGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG------ 118 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~------ 118 (204)
++|+.+|||+++.+|.-+..+.+.+-. .+.+++-|.++..+......... +..++..+...++...
T Consensus 153 v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~-----l~~~~~~v~~~~~~~~p~~~~~ 227 (375)
T KOG2198|consen 153 VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKR-----LPSPNLLVTNHDASLFPNIYLK 227 (375)
T ss_pred cCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhc-----cCCcceeeecccceeccccccc
Confidence 689999999999999999888776521 34899999999998888777644 2234555555443311
Q ss_pred -CC--CCCCeeEEEECCCccc-----------------------------hhHHHHHhcCCCcEEEEEecCCCCc
Q psy10572 119 -YE--REAPYDIIHVSPSYFT-----------------------------IPQKLLDQLVPGGRMVMPVGEPFKG 161 (204)
Q Consensus 119 -~~--~~~~~D~v~~~~~~~~-----------------------------~~~~~~~~Lk~gG~l~~~~~~~~~~ 161 (204)
.. ....||-|+++.++.. ++...+++||+||+++.++++...-
T Consensus 228 ~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpi 302 (375)
T KOG2198|consen 228 DGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPI 302 (375)
T ss_pred cCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCch
Confidence 11 2246999999876632 2356779999999999999877643
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.06 E-value=6.9e-05 Score=58.59 Aligned_cols=48 Identities=19% Similarity=0.134 Sum_probs=39.1
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhh
Q psy10572 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~ 97 (204)
...+|||+|||+|..+-.+...++...+++.+|.|+.+++.++..+..
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~ 80 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRA 80 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhc
Confidence 456999999999987777766664334899999999999999887765
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=98.04 E-value=2.6e-05 Score=54.22 Aligned_cols=79 Identities=22% Similarity=0.334 Sum_probs=56.0
Q ss_pred eEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC--CCCCCCeeEEEECCCccc---------------hhH
Q psy10572 77 RVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG--YEREAPYDIIHVSPSYFT---------------IPQ 139 (204)
Q Consensus 77 ~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~v~~~~~~~~---------------~~~ 139 (204)
+|+|+|+.+.+++..++++.... ...+++++..+.... ..+.+++|.++.|.++-- .++
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~----~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~ 76 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAG----LEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALE 76 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-----GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcC----CCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHH
Confidence 58999999999999999998854 234799998876532 233358999999876621 347
Q ss_pred HHHHhcCCCcEEEEEecCCC
Q psy10572 140 KLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 140 ~~~~~Lk~gG~l~~~~~~~~ 159 (204)
.+.++|+|||++.+.++.+-
T Consensus 77 ~al~lL~~gG~i~iv~Y~GH 96 (140)
T PF06962_consen 77 AALELLKPGGIITIVVYPGH 96 (140)
T ss_dssp HHHHHEEEEEEEEEEE--ST
T ss_pred HHHHhhccCCEEEEEEeCCC
Confidence 88999999999999987765
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00018 Score=50.54 Aligned_cols=101 Identities=29% Similarity=0.346 Sum_probs=67.9
Q ss_pred EEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCC--CCCCC-CCeeEEEE
Q psy10572 54 ILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKH--GYERE-APYDIIHV 130 (204)
Q Consensus 54 vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~-~~~D~v~~ 130 (204)
++|+|||+|... .+.........++++|.++.++..++..... . ....+.+...+... ..... ..||++..
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 125 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-A----GLGLVDFVVADALGGVLPFEDSASFDLVIS 125 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-c----CCCceEEEEeccccCCCCCCCCCceeEEee
Confidence 999999999987 4444431113789999999999885544322 1 00115777777654 33433 47999944
Q ss_pred CCCc-----cchhHHHHHhcCCCcEEEEEecCCCC
Q psy10572 131 SPSY-----FTIPQKLLDQLVPGGRMVMPVGEPFK 160 (204)
Q Consensus 131 ~~~~-----~~~~~~~~~~Lk~gG~l~~~~~~~~~ 160 (204)
.... ......+.+.++|+|.+++.......
T Consensus 126 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 126 LLVLHLLPPAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred eeehhcCCHHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 3333 34668889999999999998876553
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00025 Score=56.47 Aligned_cols=86 Identities=21% Similarity=0.230 Sum_probs=60.7
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
+.++..+||+||++|.++..+.++. +.|++||..+ +- ..+.. .+++.....|.....++.+++|.
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG---~~V~AVD~g~-l~----~~L~~-------~~~V~h~~~d~fr~~p~~~~vDw 273 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRG---MFVTAVDNGP-MA----QSLMD-------TGQVEHLRADGFKFRPPRKNVDW 273 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcC---CEEEEEechh-cC----HhhhC-------CCCEEEEeccCcccCCCCCCCCE
Confidence 3678899999999999999999974 3999999544 21 22222 46888988887655443578999
Q ss_pred EEECCCcc--chhHHHHHhcCCC
Q psy10572 128 IHVSPSYF--TIPQKLLDQLVPG 148 (204)
Q Consensus 128 v~~~~~~~--~~~~~~~~~Lk~g 148 (204)
++++.... .+.+.+.+.|..|
T Consensus 274 vVcDmve~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 274 LVCDMVEKPARVAELMAQWLVNG 296 (357)
T ss_pred EEEecccCHHHHHHHHHHHHhcC
Confidence 99987653 2445555555444
|
|
| >KOG1331|consensus | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.2e-05 Score=61.85 Aligned_cols=95 Identities=20% Similarity=0.211 Sum_probs=75.6
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccce-EEEEecCCCCCCCCCCee
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRV-QFVVWNGKHGYEREAPYD 126 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~D 126 (204)
...+..++|+|||.|-... ..|.+.++|.|++...+..++.. +. .+...|+...+....+||
T Consensus 43 ~~~gsv~~d~gCGngky~~-----~~p~~~~ig~D~c~~l~~~ak~~------------~~~~~~~ad~l~~p~~~~s~d 105 (293)
T KOG1331|consen 43 QPTGSVGLDVGCGNGKYLG-----VNPLCLIIGCDLCTGLLGGAKRS------------GGDNVCRADALKLPFREESFD 105 (293)
T ss_pred cCCcceeeecccCCcccCc-----CCCcceeeecchhhhhccccccC------------CCceeehhhhhcCCCCCCccc
Confidence 4558899999999986532 12567899999999888887652 22 577888888888889999
Q ss_pred EEEECCCccch---------hHHHHHhcCCCcEEEEEecCCC
Q psy10572 127 IIHVSPSYFTI---------PQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 127 ~v~~~~~~~~~---------~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
.+++....+|+ ++++.+.|+|||...+.++...
T Consensus 106 ~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~~ 147 (293)
T KOG1331|consen 106 AALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWALE 147 (293)
T ss_pred cchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehhh
Confidence 99999999884 4788899999999988777654
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00025 Score=52.07 Aligned_cols=114 Identities=22% Similarity=0.325 Sum_probs=83.3
Q ss_pred HHHHHHHHHHhc-cCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe
Q psy10572 35 HIHAQMLELLKD-KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW 113 (204)
Q Consensus 35 ~~~~~~~~~l~~-~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 113 (204)
.+.+.++.-+.. .++++.+||=+|+.+|....+++.-.+ .+.++++|.++......-..+.. -+|+--+-+
T Consensus 60 KLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~-------R~Ni~PIL~ 131 (231)
T COG1889 60 KLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEK-------RPNIIPILE 131 (231)
T ss_pred HHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHh-------CCCceeeec
Confidence 344444444442 258899999999999999999999884 78999999999877666655544 257777888
Q ss_pred cCCCCCC---CCCCeeEEEECCCccc----hhHHHHHhcCCCcEEEEEec
Q psy10572 114 NGKHGYE---REAPYDIIHVSPSYFT----IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 114 d~~~~~~---~~~~~D~v~~~~~~~~----~~~~~~~~Lk~gG~l~~~~~ 156 (204)
|+..... --+..|+|+.+-..+. +...+...|+++|.+++.+-
T Consensus 132 DA~~P~~Y~~~Ve~VDviy~DVAQp~Qa~I~~~Na~~FLk~~G~~~i~iK 181 (231)
T COG1889 132 DARKPEKYRHLVEKVDVIYQDVAQPNQAEILADNAEFFLKKGGYVVIAIK 181 (231)
T ss_pred ccCCcHHhhhhcccccEEEEecCCchHHHHHHHHHHHhcccCCeEEEEEE
Confidence 8664321 0146999998876655 44678889999998877654
|
|
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=97.87 E-value=5.4e-05 Score=59.65 Aligned_cols=92 Identities=24% Similarity=0.244 Sum_probs=65.0
Q ss_pred hHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe
Q psy10572 34 PHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW 113 (204)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 113 (204)
|-+...+++.+. +.++..++|...|.|+.+..+++.+ +.++++|+|.++.+++.+++++... .+++.++++
T Consensus 6 PVll~Evl~~L~--~~~~g~~vD~T~G~GGHS~aiL~~~-~~~~li~~DrD~~a~~~a~~~l~~~------~~r~~~~~~ 76 (310)
T PF01795_consen 6 PVLLKEVLEALN--PKPGGIYVDCTFGGGGHSKAILEKL-PNGRLIGIDRDPEALERAKERLKKF------DDRFIFIHG 76 (310)
T ss_dssp -TTHHHHHHHHT----TT-EEEETT-TTSHHHHHHHHT--TT-EEEEEES-HHHHHHHHCCTCCC------CTTEEEEES
T ss_pred cccHHHHHHhhC--cCCCceEEeecCCcHHHHHHHHHhC-CCCeEEEecCCHHHHHHHHHHHhhc------cceEEEEec
Confidence 456777888887 7888999999999999999999988 4589999999999999999887652 368999999
Q ss_pred cCCCCC-----C-CCCCeeEEEECCCc
Q psy10572 114 NGKHGY-----E-REAPYDIIHVSPSY 134 (204)
Q Consensus 114 d~~~~~-----~-~~~~~D~v~~~~~~ 134 (204)
++.... . ....+|-|+++.+.
T Consensus 77 ~F~~l~~~l~~~~~~~~~dgiL~DLGv 103 (310)
T PF01795_consen 77 NFSNLDEYLKELNGINKVDGILFDLGV 103 (310)
T ss_dssp -GGGHHHHHHHTTTTS-EEEEEEE-S-
T ss_pred cHHHHHHHHHHccCCCccCEEEEcccc
Confidence 866321 1 23579999887544
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >KOG2352|consensus | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00023 Score=58.73 Aligned_cols=105 Identities=15% Similarity=0.221 Sum_probs=81.9
Q ss_pred HhccCCCCC-EEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCC
Q psy10572 44 LKDKIKPGA-RILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYERE 122 (204)
Q Consensus 44 l~~~~~~~~-~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 122 (204)
+..++.+.. +++-+|||+..++..+.+.+. ..++.+|.|+..++.....-.. ..+...+...|.....++.
T Consensus 41 i~~~~~p~~~~~l~lGCGNS~l~e~ly~~G~--~dI~~iD~S~V~V~~m~~~~~~------~~~~~~~~~~d~~~l~fed 112 (482)
T KOG2352|consen 41 IMKYLSPSDFKILQLGCGNSELSEHLYKNGF--EDITNIDSSSVVVAAMQVRNAK------ERPEMQMVEMDMDQLVFED 112 (482)
T ss_pred HHHhhchhhceeEeecCCCCHHHHHHHhcCC--CCceeccccHHHHHHHHhcccc------CCcceEEEEecchhccCCC
Confidence 334456666 999999999999888877653 3899999999998888766533 2356888999988888999
Q ss_pred CCeeEEEECCCccch----------------hHHHHHhcCCCcEEEEEec
Q psy10572 123 APYDIIHVSPSYFTI----------------PQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 123 ~~~D~v~~~~~~~~~----------------~~~~~~~Lk~gG~l~~~~~ 156 (204)
++||+|+.-+.++++ .....++|+++|+.+..+.
T Consensus 113 ESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 113 ESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred cceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 999999876665442 3577899999999877665
|
|
| >KOG1596|consensus | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00011 Score=55.17 Aligned_cols=106 Identities=24% Similarity=0.352 Sum_probs=78.6
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCC---CCC
Q psy10572 47 KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE---REA 123 (204)
Q Consensus 47 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~~~ 123 (204)
+++|+.+||=+|+++|.....+....++++-|+++|.++..-.......++ -+|+--+..|+..... .-.
T Consensus 153 hikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk-------RtNiiPIiEDArhP~KYRmlVg 225 (317)
T KOG1596|consen 153 HIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK-------RTNIIPIIEDARHPAKYRMLVG 225 (317)
T ss_pred eecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc-------cCCceeeeccCCCchheeeeee
Confidence 468999999999999999999999988999999999888654444333322 2466667777653321 114
Q ss_pred CeeEEEECCCccch----hHHHHHhcCCCcEEEEEecCCC
Q psy10572 124 PYDIIHVSPSYFTI----PQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 124 ~~D~v~~~~~~~~~----~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
..|+|+++-..++. .-.+...||+||.+++++-.+.
T Consensus 226 mVDvIFaDvaqpdq~RivaLNA~~FLk~gGhfvisikanc 265 (317)
T KOG1596|consen 226 MVDVIFADVAQPDQARIVALNAQYFLKNGGHFVISIKANC 265 (317)
T ss_pred eEEEEeccCCCchhhhhhhhhhhhhhccCCeEEEEEeccc
Confidence 68999988776653 3467788999999999886554
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00013 Score=55.39 Aligned_cols=93 Identities=16% Similarity=0.089 Sum_probs=64.3
Q ss_pred HHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCC
Q psy10572 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGK 116 (204)
Q Consensus 37 ~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~ 116 (204)
...+.+.+-..+.+..+|+|||||.--++....... +...++|+|++..+++.....+..- ..+..+...|..
T Consensus 92 Ld~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~~-~~a~Y~a~DID~~~ve~l~~~l~~l------~~~~~~~v~Dl~ 164 (251)
T PF07091_consen 92 LDEFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPEA-PGATYIAYDIDSQLVEFLNAFLAVL------GVPHDARVRDLL 164 (251)
T ss_dssp HHHHHHHHCCCS---SEEEEET-TTCHHHHHTTTSS-TT-EEEEEESBHHHHHHHHHHHHHT------T-CEEEEEE-TT
T ss_pred HHHHHHHHHhcCCCCchhhhhhccCCceehhhcccC-CCcEEEEEeCCHHHHHHHHHHHHhh------CCCcceeEeeee
Confidence 444555555555678899999999998888777654 5679999999999999998887662 246777788866
Q ss_pred CCCCCCCCeeEEEECCCccch
Q psy10572 117 HGYEREAPYDIIHVSPSYFTI 137 (204)
Q Consensus 117 ~~~~~~~~~D~v~~~~~~~~~ 137 (204)
.. .+..+.|+.+..-.++-+
T Consensus 165 ~~-~~~~~~DlaLllK~lp~l 184 (251)
T PF07091_consen 165 SD-PPKEPADLALLLKTLPCL 184 (251)
T ss_dssp TS-HTTSEESEEEEET-HHHH
T ss_pred cc-CCCCCcchhhHHHHHHHH
Confidence 65 344679999888776543
|
|
| >KOG2730|consensus | Back alignment and domain information |
|---|
Probab=97.85 E-value=3e-05 Score=57.49 Aligned_cols=78 Identities=18% Similarity=0.152 Sum_probs=62.2
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC----CCCCCe
Q psy10572 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY----EREAPY 125 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~ 125 (204)
....|+|.-||.|+-++..+.... .|+++|++|.-+.-|+.|++-.+. .++++|+++|+.+.. +....+
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~---~VisIdiDPikIa~AkhNaeiYGI----~~rItFI~GD~ld~~~~lq~~K~~~ 166 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGP---YVIAIDIDPVKIACARHNAEVYGV----PDRITFICGDFLDLASKLKADKIKY 166 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCC---eEEEEeccHHHHHHHhccceeecC----CceeEEEechHHHHHHHHhhhhhee
Confidence 556899999999999988888763 899999999999999999987662 349999999977432 223447
Q ss_pred eEEEECCCc
Q psy10572 126 DIIHVSPSY 134 (204)
Q Consensus 126 D~v~~~~~~ 134 (204)
|.|+..++.
T Consensus 167 ~~vf~sppw 175 (263)
T KOG2730|consen 167 DCVFLSPPW 175 (263)
T ss_pred eeeecCCCC
Confidence 788877665
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00019 Score=57.28 Aligned_cols=95 Identities=20% Similarity=0.188 Sum_probs=71.4
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCC--CCC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYER--EAP 124 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~ 124 (204)
++|+.+|+-+|+|- |.++..+++..+ ++|+++|.++.-.+.|++.-+. .++... .....+ .+.
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~~lGAd-----------~~i~~~-~~~~~~~~~~~ 229 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEEKLELAKKLGAD-----------HVINSS-DSDALEAVKEI 229 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCChHHHHHHHHhCCc-----------EEEEcC-CchhhHHhHhh
Confidence 58899999999993 567778888763 7999999999999999876433 223322 111111 123
Q ss_pred eeEEEECCCccchhHHHHHhcCCCcEEEEEecC
Q psy10572 125 YDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 125 ~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
+|+|+...+ ...++...+.|+++|++++.=..
T Consensus 230 ~d~ii~tv~-~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 230 ADAIIDTVG-PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred CcEEEECCC-hhhHHHHHHHHhcCCEEEEECCC
Confidence 999999999 88999999999999999885544
|
|
| >KOG1269|consensus | Back alignment and domain information |
|---|
Probab=97.81 E-value=7e-05 Score=60.55 Aligned_cols=110 Identities=19% Similarity=0.265 Sum_probs=81.8
Q ss_pred HHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCC
Q psy10572 41 LELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE 120 (204)
Q Consensus 41 ~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 120 (204)
...+..-..++..++|+|||.|....++.... .+.++|++.++..+..+........ ...+..++..++...++
T Consensus 101 ~~~l~~~~~~~~~~~~~~~g~~~~~~~i~~f~--~~~~~Gl~~n~~e~~~~~~~~~~~~----l~~k~~~~~~~~~~~~f 174 (364)
T KOG1269|consen 101 IVALRESCFPGSKVLDVGTGVGGPSRYIAVFK--KAGVVGLDNNAYEAFRANELAKKAY----LDNKCNFVVADFGKMPF 174 (364)
T ss_pred hHHHhhcCcccccccccCcCcCchhHHHHHhc--cCCccCCCcCHHHHHHHHHHHHHHH----hhhhcceehhhhhcCCC
Confidence 33444445777799999999999999888764 4689999999988777766654422 12234447778788888
Q ss_pred CCCCeeEEEECCCccc------hhHHHHHhcCCCcEEEEEec
Q psy10572 121 REAPYDIIHVSPSYFT------IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 121 ~~~~~D~v~~~~~~~~------~~~~~~~~Lk~gG~l~~~~~ 156 (204)
+++.||.+.+.....+ +.+++.++++|||.+++..+
T Consensus 175 edn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~ 216 (364)
T KOG1269|consen 175 EDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEW 216 (364)
T ss_pred CccccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHH
Confidence 8999999977655443 55899999999999998554
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00063 Score=52.45 Aligned_cols=116 Identities=19% Similarity=0.242 Sum_probs=66.7
Q ss_pred HHHHHHHHHhccCCCC-CEEEEEcCCC--cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEE
Q psy10572 36 IHAQMLELLKDKIKPG-ARILDIGSGS--GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVV 112 (204)
Q Consensus 36 ~~~~~~~~l~~~~~~~-~~vLdiG~G~--G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 112 (204)
.....++.+. -..| ...||||||- -..+-.+++...|+++|.-+|.+|-.+..++..+..+. .....+++
T Consensus 55 Fl~RaVr~la--~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~-----~g~t~~v~ 127 (267)
T PF04672_consen 55 FLRRAVRYLA--EEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNP-----RGRTAYVQ 127 (267)
T ss_dssp HHHHHHHHHH--CTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-T-----TSEEEEEE
T ss_pred HHHHHHHHHH--HhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCC-----CccEEEEe
Confidence 3444444444 1213 5899999993 33445566666689999999999999999998876632 12389999
Q ss_pred ecCCCCC-----------CC-CCCeeEEEECCCccc---------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 113 WNGKHGY-----------ER-EAPYDIIHVSPSYFT---------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 113 ~d~~~~~-----------~~-~~~~D~v~~~~~~~~---------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
+|+.+.. .. ..+. .+++...+++ ++..+...|.||+.|+++.....
T Consensus 128 aD~r~p~~iL~~p~~~~~lD~~rPV-avll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d 194 (267)
T PF04672_consen 128 ADLRDPEAILAHPEVRGLLDFDRPV-AVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDD 194 (267)
T ss_dssp --TT-HHHHHCSHHHHCC--TTS---EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-T
T ss_pred CCCCCHHHHhcCHHHHhcCCCCCCe-eeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCC
Confidence 9977321 11 1223 3344444443 55788999999999999887665
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00014 Score=53.01 Aligned_cols=104 Identities=22% Similarity=0.342 Sum_probs=65.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHH----HHHHHHhhhcCccccCccceEEEEecCCCCCCCCC
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELA----ESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREA 123 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~----~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 123 (204)
++++.+|+|+-.|.|+++..++...++.+.|+++-..+... +..+.+..... ....|.+.+-.+..... ...
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e---~~~aN~e~~~~~~~A~~-~pq 121 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAARE---PVYANVEVIGKPLVALG-APQ 121 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhh---hhhhhhhhhCCcccccC-CCC
Confidence 58999999999999999999999998888998875443311 10111110000 01234444444433322 334
Q ss_pred CeeEEEECCCccc-------------hhHHHHHhcCCCcEEEEEe
Q psy10572 124 PYDIIHVSPSYFT-------------IPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 124 ~~D~v~~~~~~~~-------------~~~~~~~~Lk~gG~l~~~~ 155 (204)
..|+++.+..++. +...+.+.|||||.+.+..
T Consensus 122 ~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~d 166 (238)
T COG4798 122 KLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVED 166 (238)
T ss_pred cccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEe
Confidence 5666665444432 3368889999999998855
|
|
| >KOG3178|consensus | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00019 Score=56.94 Aligned_cols=90 Identities=18% Similarity=0.248 Sum_probs=72.5
Q ss_pred CEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEEEC
Q psy10572 52 ARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVS 131 (204)
Q Consensus 52 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 131 (204)
...+|+|.|.|..+..+.... | ++-+++.+...+..+++.+. +.++.+.+|..+. .|+ -|+|++-
T Consensus 179 ~~avDvGgGiG~v~k~ll~~f-p--~ik~infdlp~v~~~a~~~~---------~gV~~v~gdmfq~-~P~--~daI~mk 243 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKY-P--HIKGINFDLPFVLAAAPYLA---------PGVEHVAGDMFQD-TPK--GDAIWMK 243 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhC-C--CCceeecCHHHHHhhhhhhc---------CCcceeccccccc-CCC--cCeEEEE
Confidence 689999999999999998876 4 78899988888887777653 3478888998877 443 4588887
Q ss_pred CCccc--------hhHHHHHhcCCCcEEEEEec
Q psy10572 132 PSYFT--------IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 132 ~~~~~--------~~~~~~~~Lk~gG~l~~~~~ 156 (204)
-.+++ ++++++..|+|||.+++.-.
T Consensus 244 WiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 244 WILHDWTDEDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred eecccCChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 77765 55899999999999999665
|
|
| >KOG1709|consensus | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00032 Score=52.02 Aligned_cols=97 Identities=15% Similarity=0.179 Sum_probs=72.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC--CCCCCCee
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG--YEREAPYD 126 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D 126 (204)
.++.+||++|-|.|.....+...- +. .=+.+|..+..++..+...-. ...|+.+..+-+.+. ..+++.||
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~-p~-~H~IiE~hp~V~krmr~~gw~------ek~nViil~g~WeDvl~~L~d~~FD 171 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAP-PD-EHWIIEAHPDVLKRMRDWGWR------EKENVIILEGRWEDVLNTLPDKHFD 171 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcC-Cc-ceEEEecCHHHHHHHHhcccc------cccceEEEecchHhhhccccccCcc
Confidence 678899999999999988888875 44 445579999999998876432 235777777765532 23456799
Q ss_pred EEEECCCc------cchhHHHHHhcCCCcEEEE
Q psy10572 127 IIHVSPSY------FTIPQKLLDQLVPGGRMVM 153 (204)
Q Consensus 127 ~v~~~~~~------~~~~~~~~~~Lk~gG~l~~ 153 (204)
-|+.+.-. .++.+.+.++|||+|.+-.
T Consensus 172 GI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~Sy 204 (271)
T KOG1709|consen 172 GIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSY 204 (271)
T ss_pred eeEeechhhHHHHHHHHHHHHhhhcCCCceEEE
Confidence 99877542 2355888999999998855
|
|
| >KOG3987|consensus | Back alignment and domain information |
|---|
Probab=97.76 E-value=9.8e-06 Score=59.48 Aligned_cols=111 Identities=19% Similarity=0.246 Sum_probs=75.4
Q ss_pred cCChHHHHHHHHHHhccC-CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceE
Q psy10572 31 ISSPHIHAQMLELLKDKI-KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQ 109 (204)
Q Consensus 31 ~~~~~~~~~~~~~l~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~ 109 (204)
+.++...+.++..-.+.- ..+.++||+|+|.|-.+..++..+. +|++.|.|..|....++. +..
T Consensus 92 ifSe~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~fe---evyATElS~tMr~rL~kk------------~yn 156 (288)
T KOG3987|consen 92 IFSEEQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTFE---EVYATELSWTMRDRLKKK------------NYN 156 (288)
T ss_pred EecHHHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcchHH---HHHHHHhhHHHHHHHhhc------------CCc
Confidence 356666666554432211 2346999999999999999999884 899999999998877653 222
Q ss_pred EEEe-cCCCCCCCCCCeeEEEECCCcc------chhHHHHHhcCC-CcEEEEEecCCC
Q psy10572 110 FVVW-NGKHGYEREAPYDIIHVSPSYF------TIPQKLLDQLVP-GGRMVMPVGEPF 159 (204)
Q Consensus 110 ~~~~-d~~~~~~~~~~~D~v~~~~~~~------~~~~~~~~~Lk~-gG~l~~~~~~~~ 159 (204)
++.. ++.+. .-++|+|.|...+. .+++.+..+|+| +|++++...-+.
T Consensus 157 Vl~~~ew~~t---~~k~dli~clNlLDRc~~p~kLL~Di~~vl~psngrvivaLVLP~ 211 (288)
T KOG3987|consen 157 VLTEIEWLQT---DVKLDLILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVALVLPY 211 (288)
T ss_pred eeeehhhhhc---CceeehHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEEEEEecc
Confidence 2221 11121 24699997765443 367899999999 899988765443
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0034 Score=47.62 Aligned_cols=103 Identities=17% Similarity=0.204 Sum_probs=60.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCC--CCee
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYERE--APYD 126 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~D 126 (204)
-.+++||-+|-.- ..++.++... ...+++.+|+++..++..++..+..+ . +++....|+....+++ ++||
T Consensus 43 L~gk~il~lGDDD-LtSlA~al~~-~~~~I~VvDiDeRll~fI~~~a~~~g-----l-~i~~~~~DlR~~LP~~~~~~fD 114 (243)
T PF01861_consen 43 LEGKRILFLGDDD-LTSLALALTG-LPKRITVVDIDERLLDFINRVAEEEG-----L-PIEAVHYDLRDPLPEELRGKFD 114 (243)
T ss_dssp STT-EEEEES-TT--HHHHHHHHT---SEEEEE-S-HHHHHHHHHHHHHHT--------EEEE---TTS---TTTSS-BS
T ss_pred ccCCEEEEEcCCc-HHHHHHHhhC-CCCeEEEEEcCHHHHHHHHHHHHHcC-----C-ceEEEEecccccCCHHHhcCCC
Confidence 3578999998554 2333333322 34599999999999999998887744 3 4899999988776553 7899
Q ss_pred EEEECCCccc-----hhHHHHHhcCCCc-EEEEEecCCC
Q psy10572 127 IIHVSPSYFT-----IPQKLLDQLVPGG-RMVMPVGEPF 159 (204)
Q Consensus 127 ~v~~~~~~~~-----~~~~~~~~Lk~gG-~l~~~~~~~~ 159 (204)
+++.+++..- ++.+....||..| ..++.+....
T Consensus 115 ~f~TDPPyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~ 153 (243)
T PF01861_consen 115 VFFTDPPYTPEGLKLFLSRGIEALKGEGCAGYFGFTHKE 153 (243)
T ss_dssp EEEE---SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHhCCCCceEEEEEecCc
Confidence 9999999854 5577778887776 6666666554
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >KOG0024|consensus | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00041 Score=54.53 Aligned_cols=101 Identities=17% Similarity=0.143 Sum_probs=76.1
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecC-----C---CC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNG-----K---HG 118 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~-----~---~~ 118 (204)
.+++.+||-+|+|+ |..+...++.. ...+|+.+|+++..++.|++ +.. ..+....... . +.
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~-GA~~VVi~d~~~~Rle~Ak~-~Ga--------~~~~~~~~~~~~~~~~~~v~~ 236 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAM-GASDVVITDLVANRLELAKK-FGA--------TVTDPSSHKSSPQELAELVEK 236 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHc-CCCcEEEeecCHHHHHHHHH-hCC--------eEEeeccccccHHHHHHHHHh
Confidence 68899999999998 99999999988 45699999999999999998 422 1111111110 0 11
Q ss_pred CCCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEEecCC
Q psy10572 119 YEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 119 ~~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
......+|+.+.........+.+...++.+|.+++.-+..
T Consensus 237 ~~g~~~~d~~~dCsG~~~~~~aai~a~r~gGt~vlvg~g~ 276 (354)
T KOG0024|consen 237 ALGKKQPDVTFDCSGAEVTIRAAIKATRSGGTVVLVGMGA 276 (354)
T ss_pred hccccCCCeEEEccCchHHHHHHHHHhccCCEEEEeccCC
Confidence 2233459999999999999999999999999977755443
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00084 Score=52.05 Aligned_cols=118 Identities=19% Similarity=0.198 Sum_probs=76.3
Q ss_pred HHHHHHHHHhccC------CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhh----c-------
Q psy10572 36 IHAQMLELLKDKI------KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK----G------- 98 (204)
Q Consensus 36 ~~~~~~~~l~~~~------~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~----~------- 98 (204)
....+++.+.... +.+.+||--|||-|+++-.++... ..+.|.|.|-.|+-..+-.+.. +
T Consensus 36 ~~~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G---~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf 112 (270)
T PF07942_consen 36 CYSPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLG---YAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPF 112 (270)
T ss_pred HHHHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhcc---ceEEEEEchHHHHHHHHHHHcccCCCCcEEEecc
Confidence 4445555555432 234699999999999999999975 3899999999986554443211 0
Q ss_pred ---Ccc---------------------ccCccceEEEEecCCCCCCCC---CCeeEEEECCCcc------chhHHHHHhc
Q psy10572 99 ---NSE---------------------LLDQGRVQFVVWNGKHGYERE---APYDIIHVSPSYF------TIPQKLLDQL 145 (204)
Q Consensus 99 ---~~~---------------------~~~~~~~~~~~~d~~~~~~~~---~~~D~v~~~~~~~------~~~~~~~~~L 145 (204)
.++ .....++.+..+|+.+...+. +.||.|+...-.. ..++.+.++|
T Consensus 113 ~~~~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lL 192 (270)
T PF07942_consen 113 VHSFSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLL 192 (270)
T ss_pred eecccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHh
Confidence 000 001235666777766544443 6899987654332 2558899999
Q ss_pred CCCcEEEEEecC
Q psy10572 146 VPGGRMVMPVGE 157 (204)
Q Consensus 146 k~gG~l~~~~~~ 157 (204)
|||| +++.+++
T Consensus 193 kpgG-~WIN~GP 203 (270)
T PF07942_consen 193 KPGG-YWINFGP 203 (270)
T ss_pred ccCC-EEEecCC
Confidence 9999 5555543
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.001 Score=53.93 Aligned_cols=101 Identities=20% Similarity=0.181 Sum_probs=72.6
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe-cCC---CCCCCCC
Q psy10572 49 KPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW-NGK---HGYEREA 123 (204)
Q Consensus 49 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-d~~---~~~~~~~ 123 (204)
.++.+|+-+|||+ |.++..+++.. ....++++|.++..++.|++...... +..... +.. .......
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~-Ga~~Viv~d~~~~Rl~~A~~~~g~~~--------~~~~~~~~~~~~~~~~t~g~ 237 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLL-GASVVIVVDRSPERLELAKEAGGADV--------VVNPSEDDAGAEILELTGGR 237 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCceEEEeCCCHHHHHHHHHhCCCeE--------eecCccccHHHHHHHHhCCC
Confidence 4445999999998 99998888887 45699999999999999988543311 111111 100 0112223
Q ss_pred CeeEEEECCCccchhHHHHHhcCCCcEEEEEecCC
Q psy10572 124 PYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 124 ~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
.+|+++-..+....++.+..+++++|.+.+.-...
T Consensus 238 g~D~vie~~G~~~~~~~ai~~~r~gG~v~~vGv~~ 272 (350)
T COG1063 238 GADVVIEAVGSPPALDQALEALRPGGTVVVVGVYG 272 (350)
T ss_pred CCCEEEECCCCHHHHHHHHHHhcCCCEEEEEeccC
Confidence 69999999887778899999999999998855443
|
|
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00021 Score=54.02 Aligned_cols=86 Identities=21% Similarity=0.362 Sum_probs=49.8
Q ss_pred CCCC--CEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCcc-cc---CccceEEEEecCCCCC-C
Q psy10572 48 IKPG--ARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSE-LL---DQGRVQFVVWNGKHGY-E 120 (204)
Q Consensus 48 ~~~~--~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~---~~~~~~~~~~d~~~~~-~ 120 (204)
++++ .+|||..+|-|..+..++... ++|+++|.||.+....+.-+...... .. ...+++++++|..+.. .
T Consensus 71 lk~~~~~~VLDaTaGLG~Da~vlA~~G---~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~ 147 (234)
T PF04445_consen 71 LKPGMRPSVLDATAGLGRDAFVLASLG---CKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQ 147 (234)
T ss_dssp -BTTB---EEETT-TTSHHHHHHHHHT-----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCC
T ss_pred CCCCCCCEEEECCCcchHHHHHHHccC---CeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhh
Confidence 3454 499999999999999998643 59999999998776666554331100 00 1258999999987654 3
Q ss_pred CCCCeeEEEECCCccc
Q psy10572 121 REAPYDIIHVSPSYFT 136 (204)
Q Consensus 121 ~~~~~D~v~~~~~~~~ 136 (204)
+..+||+|++++++++
T Consensus 148 ~~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 148 PDNSFDVVYFDPMFPE 163 (234)
T ss_dssp HSS--SEEEE--S---
T ss_pred cCCCCCEEEECCCCCC
Confidence 3578999999998865
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00046 Score=56.29 Aligned_cols=105 Identities=18% Similarity=0.198 Sum_probs=75.5
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC-CCCCCeeE
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-EREAPYDI 127 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~ 127 (204)
..+.+|||.=+|+|.=++..++.++....|+.-|+|+.+++..+.|++.++. ....+++.+.|+...+ .....||+
T Consensus 48 ~~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~---~~~~~~v~~~DAn~ll~~~~~~fD~ 124 (377)
T PF02005_consen 48 KGPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGL---EDERIEVSNMDANVLLYSRQERFDV 124 (377)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT----SGCCEEEEES-HHHHHCHSTT-EEE
T ss_pred cCCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccc---cCceEEEehhhHHHHhhhccccCCE
Confidence 4567999999999999999999864445899999999999999999988762 2235888888866433 24578999
Q ss_pred EEECCCcc--chhHHHHHhcCCCcEEEEEec
Q psy10572 128 IHVSPSYF--TIPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 128 v~~~~~~~--~~~~~~~~~Lk~gG~l~~~~~ 156 (204)
|=+++--. .+++.+.+.++.||.|.++.-
T Consensus 125 IDlDPfGSp~pfldsA~~~v~~gGll~vTaT 155 (377)
T PF02005_consen 125 IDLDPFGSPAPFLDSALQAVKDGGLLCVTAT 155 (377)
T ss_dssp EEE--SS--HHHHHHHHHHEEEEEEEEEEE-
T ss_pred EEeCCCCCccHhHHHHHHHhhcCCEEEEecc
Confidence 98775332 477999999999999998654
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >KOG2671|consensus | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00026 Score=55.98 Aligned_cols=103 Identities=21% Similarity=0.237 Sum_probs=76.5
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHH-------HHHHHhhhcCccccCccceEEEEecCCC-CC
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAE-------SSIKNIDKGNSELLDQGRVQFVVWNGKH-GY 119 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~~d~~~-~~ 119 (204)
+.+|+-|.|---|+|.+....++.. +.|+|.|++-.++. ..+.|+++.+ ....-+.+..+|... .+
T Consensus 206 v~pGdivyDPFVGTGslLvsaa~FG---a~viGtDIDyr~vragrg~~~si~aNFkQYg---~~~~fldvl~~D~sn~~~ 279 (421)
T KOG2671|consen 206 VKPGDIVYDPFVGTGSLLVSAAHFG---AYVIGTDIDYRTVRAGRGEDESIKANFKQYG---SSSQFLDVLTADFSNPPL 279 (421)
T ss_pred cCCCCEEecCccccCceeeehhhhc---ceeeccccchheeecccCCCcchhHhHHHhC---CcchhhheeeecccCcch
Confidence 7899999999999999988888754 49999999988776 3455555544 122346677788663 33
Q ss_pred CCCCCeeEEEECCCcc---------------------------------------chhHHHHHhcCCCcEEEEEec
Q psy10572 120 EREAPYDIIHVSPSYF---------------------------------------TIPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 120 ~~~~~~D~v~~~~~~~---------------------------------------~~~~~~~~~Lk~gG~l~~~~~ 156 (204)
.++..||.|+|++++. +++.-..+.|..||++++-.+
T Consensus 280 rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p 355 (421)
T KOG2671|consen 280 RSNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLP 355 (421)
T ss_pred hhcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecC
Confidence 4467899999998871 133566689999999988555
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00031 Score=54.09 Aligned_cols=107 Identities=17% Similarity=0.134 Sum_probs=64.3
Q ss_pred CCCCEEEEEcCCCcHHH-HHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCc-ccc-----------------------
Q psy10572 49 KPGARILDIGSGSGYLT-ACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNS-ELL----------------------- 103 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~-~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~----------------------- 103 (204)
.++.++||||||+-... +.+.+.+. +++..|..+...+..++.++..+. +|.
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa~~~f~---~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~l 131 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSACEWFE---EIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKL 131 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTGGGTEE---EEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHhhhhHHHhhc---ceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHH
Confidence 45679999999985542 33334342 899999999998877776644211 110
Q ss_pred CccceEEEEecCCCCC-CCC-----CCeeEEEECCCccc----------hhHHHHHhcCCCcEEEEEecCC
Q psy10572 104 DQGRVQFVVWNGKHGY-ERE-----APYDIIHVSPSYFT----------IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 104 ~~~~~~~~~~d~~~~~-~~~-----~~~D~v~~~~~~~~----------~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
...--.++..|..+.. ... .++|+|++...+.. .++.+.++|||||.|++...-+
T Consensus 132 R~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~ 202 (256)
T PF01234_consen 132 RRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLG 202 (256)
T ss_dssp HHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred HHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcC
Confidence 0011236677766432 111 24999998876633 4578889999999999965433
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0016 Score=48.33 Aligned_cols=114 Identities=16% Similarity=0.209 Sum_probs=57.3
Q ss_pred ChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHH---hCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceE
Q psy10572 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYM---AGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQ 109 (204)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~ 109 (204)
.+.-...+.+.+-+ + ++..|+|+|.-.|+.+.+.+.. +++.++|+|+|++-...... ..+.+. ..++++
T Consensus 17 ~P~Dm~~~qeli~~-~-kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~--a~e~hp----~~~rI~ 88 (206)
T PF04989_consen 17 YPQDMVAYQELIWE-L-KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRK--AIESHP----MSPRIT 88 (206)
T ss_dssp -HHHHHHHHHHHHH-H---SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG--------TTEE
T ss_pred CHHHHHHHHHHHHH-h-CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchH--HHhhcc----ccCceE
Confidence 33344444444442 2 4559999999999888777654 34567999999965433221 111111 236899
Q ss_pred EEEecCCCCC--------CCCCCeeEEEECCCc--cch---hHHHHHhcCCCcEEEEE
Q psy10572 110 FVVWNGKHGY--------EREAPYDIIHVSPSY--FTI---PQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 110 ~~~~d~~~~~--------~~~~~~D~v~~~~~~--~~~---~~~~~~~Lk~gG~l~~~ 154 (204)
++++|..+.. .......+|+.+..- .++ ++....++++|+++++.
T Consensus 89 ~i~Gds~d~~~~~~v~~~~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVe 146 (206)
T PF04989_consen 89 FIQGDSIDPEIVDQVRELASPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVE 146 (206)
T ss_dssp EEES-SSSTHHHHTSGSS----SSEEEEESS----SSHHHHHHHHHHT--TT-EEEET
T ss_pred EEECCCCCHHHHHHHHHhhccCCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEE
Confidence 9999976321 112345577766552 333 35677899999999883
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00095 Score=50.32 Aligned_cols=97 Identities=27% Similarity=0.279 Sum_probs=66.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEE-ecCCCCC---CCCCC
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVV-WNGKHGY---EREAP 124 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~d~~~~~---~~~~~ 124 (204)
.++..+||+|+.+|.++..+.+... .+|+++|+.-..+..- ++. .+++..++ .|+.... +. +.
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~gA--k~VyavDVG~~Ql~~k---LR~-------d~rV~~~E~tN~r~l~~~~~~-~~ 144 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRGA--KHVYAVDVGYGQLHWK---LRN-------DPRVIVLERTNVRYLTPEDFT-EK 144 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcCC--cEEEEEEccCCccCHh---Hhc-------CCcEEEEecCChhhCCHHHcc-cC
Confidence 6788999999999999999999753 4999999876543322 111 23444443 4433221 22 36
Q ss_pred eeEEEECCCccc---hhHHHHHhcCCCcEEEEEecCC
Q psy10572 125 YDIIHVSPSYFT---IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 125 ~D~v~~~~~~~~---~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
.|+++++-.+-. ++..+..++++++.++.-+-+.
T Consensus 145 ~d~~v~DvSFISL~~iLp~l~~l~~~~~~~v~LvKPQ 181 (245)
T COG1189 145 PDLIVIDVSFISLKLILPALLLLLKDGGDLVLLVKPQ 181 (245)
T ss_pred CCeEEEEeehhhHHHHHHHHHHhcCCCceEEEEecch
Confidence 788888766644 5578889999999988855443
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00032 Score=52.18 Aligned_cols=84 Identities=14% Similarity=0.103 Sum_probs=58.4
Q ss_pred CEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCC---CCCCeeEE
Q psy10572 52 ARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE---REAPYDII 128 (204)
Q Consensus 52 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~D~v 128 (204)
.++|||||=+.......... -.|+.||+++. .-.+.+.|+.+.+. +.++||+|
T Consensus 53 lrlLEVGals~~N~~s~~~~----fdvt~IDLns~--------------------~~~I~qqDFm~rplp~~~~e~FdvI 108 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTSGW----FDVTRIDLNSQ--------------------HPGILQQDFMERPLPKNESEKFDVI 108 (219)
T ss_pred ceEEeecccCCCCcccccCc----eeeEEeecCCC--------------------CCCceeeccccCCCCCCcccceeEE
Confidence 69999999865543332222 26999998763 23456777765543 35789999
Q ss_pred EECCCccc---------hhHHHHHhcCCCcE-----EEEEecCCC
Q psy10572 129 HVSPSYFT---------IPQKLLDQLVPGGR-----MVMPVGEPF 159 (204)
Q Consensus 129 ~~~~~~~~---------~~~~~~~~Lk~gG~-----l~~~~~~~~ 159 (204)
.+.-++.. .+.++.+.|+|+|. |+++++...
T Consensus 109 s~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~C 153 (219)
T PF11968_consen 109 SLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPC 153 (219)
T ss_pred EEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchH
Confidence 77655533 45788999999999 888777543
|
|
| >KOG4058|consensus | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0018 Score=45.22 Aligned_cols=118 Identities=19% Similarity=0.099 Sum_probs=80.1
Q ss_pred HHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEec
Q psy10572 35 HIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWN 114 (204)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d 114 (204)
...+..++.+. .++..+.+|+|+|.|......++... -..+|+|+++-++..++-..-..+ ......|..-|
T Consensus 59 eQv~nVLSll~--~n~~GklvDlGSGDGRiVlaaar~g~--~~a~GvELNpwLVaysrl~a~R~g----~~k~trf~Rkd 130 (199)
T KOG4058|consen 59 EQVENVLSLLR--GNPKGKLVDLGSGDGRIVLAAARCGL--RPAVGVELNPWLVAYSRLHAWRAG----CAKSTRFRRKD 130 (199)
T ss_pred HHHHHHHHHcc--CCCCCcEEeccCCCceeehhhhhhCC--CcCCceeccHHHHHHHHHHHHHHh----cccchhhhhhh
Confidence 34445556555 47778999999999999988888752 378899999999888876654432 23467788888
Q ss_pred CCCCCCCCCCeeEEEEC-CCccchhHHHHHhcCCCcEEEEEecCCCC
Q psy10572 115 GKHGYEREAPYDIIHVS-PSYFTIPQKLLDQLVPGGRMVMPVGEPFK 160 (204)
Q Consensus 115 ~~~~~~~~~~~D~v~~~-~~~~~~~~~~~~~Lk~gG~l~~~~~~~~~ 160 (204)
+.+....+-.+-+|+.. ..+.++..++..-+..|..++.+-++...
T Consensus 131 lwK~dl~dy~~vviFgaes~m~dLe~KL~~E~p~nt~vvacRFPLP~ 177 (199)
T KOG4058|consen 131 LWKVDLRDYRNVVIFGAESVMPDLEDKLRTELPANTRVVACRFPLPT 177 (199)
T ss_pred hhhccccccceEEEeehHHHHhhhHHHHHhhCcCCCeEEEEecCCCc
Confidence 76654433223233322 23456677888888888888876655543
|
|
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0042 Score=49.83 Aligned_cols=118 Identities=14% Similarity=0.151 Sum_probs=85.6
Q ss_pred ChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEE
Q psy10572 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVV 112 (204)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 112 (204)
++++.-..+..+.. .-...|+|.=+|+|.=++.++...+ ..+++.-|+||.+.+.++.|+..|. ..+..++.
T Consensus 37 NRDlsV~~l~~~~~--~~~~~v~DalsatGiRgIRya~E~~-~~~v~lNDisp~Avelik~Nv~~N~-----~~~~~v~n 108 (380)
T COG1867 37 NRDLSVLVLKAFGK--LLPKRVLDALSATGIRGIRYAVETG-VVKVVLNDISPKAVELIKENVRLNS-----GEDAEVIN 108 (380)
T ss_pred ccchhHHHHHHhhc--cCCeEEeecccccchhHhhhhhhcC-ccEEEEccCCHHHHHHHHHHHHhcC-----cccceeec
Confidence 44444445555541 1177999999999999999999873 3489999999999999999998862 24566666
Q ss_pred ecCCCCCCC-CCCeeEEEECCCc--cchhHHHHHhcCCCcEEEEEecCC
Q psy10572 113 WNGKHGYER-EAPYDIIHVSPSY--FTIPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 113 ~d~~~~~~~-~~~~D~v~~~~~~--~~~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
.|+...... ...||+|=+++-- ..+++.+.+.++.+|++-++.-..
T Consensus 109 ~DAN~lm~~~~~~fd~IDiDPFGSPaPFlDaA~~s~~~~G~l~vTATD~ 157 (380)
T COG1867 109 KDANALLHELHRAFDVIDIDPFGSPAPFLDAALRSVRRGGLLCVTATDT 157 (380)
T ss_pred chHHHHHHhcCCCccEEecCCCCCCchHHHHHHHHhhcCCEEEEEeccc
Confidence 675543322 3679999776532 346799999999999998855433
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0019 Score=52.12 Aligned_cols=98 Identities=14% Similarity=0.041 Sum_probs=65.3
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 49 KPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 49 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
.++.+||-.|||. |.++..+++..+ ..+++++|.++..++.+++.-...- +.....+........+.+|+
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G-~~~Vi~~~~~~~~~~~a~~lGa~~v--------i~~~~~~~~~~~~~~g~~D~ 238 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLG-AAEIVCADVSPRSLSLAREMGADKL--------VNPQNDDLDHYKAEKGYFDV 238 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEEeCCHHHHHHHHHcCCcEE--------ecCCcccHHHHhccCCCCCE
Confidence 4678999999886 778888888763 2368999999999888876321100 00001111111111235999
Q ss_pred EEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 128 IHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 128 v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
|+...+.....+.+.+.|+++|++++.-
T Consensus 239 vid~~G~~~~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 239 SFEVSGHPSSINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred EEECCCCHHHHHHHHHHhhcCCEEEEEc
Confidence 9988776667788999999999998753
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0075 Score=51.13 Aligned_cols=97 Identities=22% Similarity=0.218 Sum_probs=66.7
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEE--EEecC---------C
Q psy10572 49 KPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQF--VVWNG---------K 116 (204)
Q Consensus 49 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~d~---------~ 116 (204)
.++.+|+-+|||. |..++..++..+ +.|+++|.++..++.++..-.. .+.+ ...+. .
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lG--A~V~a~D~~~~rle~aeslGA~---------~v~i~~~e~~~~~~gya~~~s 231 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLG--AIVRAFDTRPEVAEQVESMGAE---------FLELDFEEEGGSGDGYAKVMS 231 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHcCCe---------EEEeccccccccccchhhhcc
Confidence 4688999999997 888898999875 4899999999999988763211 0111 00000 0
Q ss_pred CC-------CCCC--CCeeEEEECCCcc-----ch-hHHHHHhcCCCcEEEEEec
Q psy10572 117 HG-------YERE--APYDIIHVSPSYF-----TI-PQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 117 ~~-------~~~~--~~~D~v~~~~~~~-----~~-~~~~~~~Lk~gG~l~~~~~ 156 (204)
.. .+.+ ..+|+||.....+ .+ .++..+.+||||.++..-.
T Consensus 232 ~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 232 EEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred hhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 00 0011 3599999887753 35 4999999999999876543
|
|
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0041 Score=42.35 Aligned_cols=48 Identities=13% Similarity=-0.049 Sum_probs=42.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhc
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKG 98 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~ 98 (204)
-.+++|+|||++-|..+++++.... -.|+++|+++...+..+++++.+
T Consensus 27 vk~KtV~dIGA~iGdSaiYF~l~GA--K~Vva~E~~~kl~k~~een~k~n 74 (156)
T PHA01634 27 VYQRTIQIVGADCGSSALYFLLRGA--SFVVQYEKEEKLRKKWEEVCAYF 74 (156)
T ss_pred ecCCEEEEecCCccchhhHHhhcCc--cEEEEeccCHHHHHHHHHHhhhh
Confidence 4578999999999999999988753 38999999999999999988763
|
|
| >TIGR00497 hsdM type I restriction system adenine methylase (hsdM) | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.019 Score=48.91 Aligned_cols=132 Identities=17% Similarity=0.148 Sum_probs=84.6
Q ss_pred ccCCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhC---CCceEEEEEcCHHHHHHHHHHhhhcCcc
Q psy10572 25 IGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAG---PEGRVYGVEHVMELAESSIKNIDKGNSE 101 (204)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~ 101 (204)
.+.|.+.+...+...+...+.+...++..|.|..||+|.+.....+... ....++|.|..+.+...++.+...++.
T Consensus 192 t~~g~~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~- 270 (501)
T TIGR00497 192 KSGGEFFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNI- 270 (501)
T ss_pred CcCceeeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCC-
Confidence 3456778888888888877764334678999999999998765544331 124689999999999999988654321
Q ss_pred ccCccceEEEEecCCCC--CCCCCCeeEEEECCCccc-------------------------------hhHHHHHhcCCC
Q psy10572 102 LLDQGRVQFVVWNGKHG--YEREAPYDIIHVSPSYFT-------------------------------IPQKLLDQLVPG 148 (204)
Q Consensus 102 ~~~~~~~~~~~~d~~~~--~~~~~~~D~v~~~~~~~~-------------------------------~~~~~~~~Lk~g 148 (204)
..+......+|-... .....+||.|++|+++.. ++......|++|
T Consensus 271 --~~~t~~~~~~dtl~~~d~~~~~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~g 348 (501)
T TIGR00497 271 --DYANFNIINADTLTTKEWENENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQE 348 (501)
T ss_pred --CccccCcccCCcCCCccccccccCCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCC
Confidence 111222223332221 112346888888775421 124566789999
Q ss_pred cEEEEEecCCC
Q psy10572 149 GRMVMPVGEPF 159 (204)
Q Consensus 149 G~l~~~~~~~~ 159 (204)
|...+..+...
T Consensus 349 G~~aiI~~~gv 359 (501)
T TIGR00497 349 GTAAIVCFPGI 359 (501)
T ss_pred CeEEEEecCCc
Confidence 98777666553
|
Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)). |
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.001 Score=52.87 Aligned_cols=105 Identities=16% Similarity=0.134 Sum_probs=64.3
Q ss_pred CCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC---CCCCCCeeE
Q psy10572 51 GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG---YEREAPYDI 127 (204)
Q Consensus 51 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~~D~ 127 (204)
..+|||+|.|+|.....+...++.--.++.+|.|+..-+.......... .....+...|.... ......|++
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~-----t~~td~r~s~vt~dRl~lp~ad~ytl 188 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVS-----TEKTDWRASDVTEDRLSLPAADLYTL 188 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcc-----cccCCCCCCccchhccCCCccceeeh
Confidence 3579999999998877766666322367778888887666654433211 11122222222211 122345777
Q ss_pred EEECCCc---------cchhHHHHHhcCCCcEEEEEecCCCC
Q psy10572 128 IHVSPSY---------FTIPQKLLDQLVPGGRMVMPVGEPFK 160 (204)
Q Consensus 128 v~~~~~~---------~~~~~~~~~~Lk~gG~l~~~~~~~~~ 160 (204)
++...-+ ...++.++.++.|||.|+++..+...
T Consensus 189 ~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~ 230 (484)
T COG5459 189 AIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPA 230 (484)
T ss_pred hhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCch
Confidence 7654222 12568899999999999998876653
|
|
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.004 Score=46.84 Aligned_cols=104 Identities=17% Similarity=0.185 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHhcc----CCCCCEEEEEcCCCcHH-HHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccce
Q psy10572 34 PHIHAQMLELLKDK----IKPGARILDIGSGSGYL-TACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRV 108 (204)
Q Consensus 34 ~~~~~~~~~~l~~~----~~~~~~vLdiG~G~G~~-~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~ 108 (204)
.+....+.+++..- ..+..++||||.|.... .+.-.+.. +-+.+|.|+++..+..|+.++..+.. ....+
T Consensus 58 AdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eY--gwrfvGseid~~sl~sA~~ii~~N~~---l~~~I 132 (292)
T COG3129 58 ADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEY--GWRFVGSEIDSQSLSSAKAIISANPG---LERAI 132 (292)
T ss_pred hHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceee--cceeecCccCHHHHHHHHHHHHcCcc---hhhhe
Confidence 34555666666521 23567899999996433 22112222 23789999999999999999887531 12345
Q ss_pred EEEEecCC----CCC-CCCCCeeEEEECCCccchhHHHH
Q psy10572 109 QFVVWNGK----HGY-EREAPYDIIHVSPSYFTIPQKLL 142 (204)
Q Consensus 109 ~~~~~d~~----~~~-~~~~~~D~v~~~~~~~~~~~~~~ 142 (204)
++....-. ... -..+.||.+.||++++...+.+.
T Consensus 133 ~lr~qk~~~~if~giig~nE~yd~tlCNPPFh~s~~da~ 171 (292)
T COG3129 133 RLRRQKDSDAIFNGIIGKNERYDATLCNPPFHDSAADAR 171 (292)
T ss_pred eEEeccCccccccccccccceeeeEecCCCcchhHHHHH
Confidence 55443212 111 22478999999999988664443
|
|
| >KOG3201|consensus | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.00033 Score=49.59 Aligned_cols=105 Identities=21% Similarity=0.292 Sum_probs=69.5
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCC--CCCCCCCe
Q psy10572 49 KPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKH--GYEREAPY 125 (204)
Q Consensus 49 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~ 125 (204)
..+.+|||+|.|. |..++.++... +...|...|-+...++..++....+.. ....++.++..+... ......+|
T Consensus 28 ~rg~~ilelgggft~laglmia~~a-~~~~v~ltdgne~svrnv~ki~~~n~~--s~~tsc~vlrw~~~~aqsq~eq~tF 104 (201)
T KOG3201|consen 28 IRGRRILELGGGFTGLAGLMIACKA-PDSSVWLTDGNEESVRNVEKIRNSNMA--SSLTSCCVLRWLIWGAQSQQEQHTF 104 (201)
T ss_pred HhHHHHHHhcCchhhhhhhheeeec-CCceEEEecCCHHHHHHHHHHHhcccc--cccceehhhHHHHhhhHHHHhhCcc
Confidence 3467999999995 77777777766 667899999999988888776554310 112233333322221 11223589
Q ss_pred eEEEECCCcc------chhHHHHHhcCCCcEEEEEec
Q psy10572 126 DIIHVSPSYF------TIPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 126 D~v~~~~~~~------~~~~~~~~~Lk~gG~l~~~~~ 156 (204)
|+|++..... .+.+.+..+|+|.|.-++.-|
T Consensus 105 DiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsP 141 (201)
T KOG3201|consen 105 DIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSP 141 (201)
T ss_pred cEEEeccchhHHHHHHHHHHHHHHHhCcccceeEecC
Confidence 9998876552 366889999999999666433
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0044 Score=48.80 Aligned_cols=47 Identities=23% Similarity=0.256 Sum_probs=42.0
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhh
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~ 97 (204)
-+++..|||..||+|..+..+.+... +.+|+|+++..++.|++++..
T Consensus 206 S~~GD~VLDPF~GSGTT~~AA~~lgR---~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 206 SNPGDIVLDPFAGSFTTGAVAKASGR---KFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCCCEEEECCCCCcHHHHHHHHcCC---CEEEEeCCHHHHHHHHHHHHh
Confidence 48999999999999999888877654 999999999999999999764
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0092 Score=48.32 Aligned_cols=94 Identities=20% Similarity=0.169 Sum_probs=62.4
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEc---CHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCC
Q psy10572 49 KPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEH---VMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAP 124 (204)
Q Consensus 49 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 124 (204)
.++.+|+-+|+|. |.++..+++..+ +++++++. ++...+.+++.-. ..+.....+..+ ......
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G--~~vi~~~~~~~~~~~~~~~~~~Ga---------~~v~~~~~~~~~-~~~~~~ 238 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRG--FEVYVLNRRDPPDPKADIVEELGA---------TYVNSSKTPVAE-VKLVGE 238 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHcCC---------EEecCCccchhh-hhhcCC
Confidence 5778999999986 788888888763 48999986 5677676654211 111100111111 111246
Q ss_pred eeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 125 YDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 125 ~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
+|+|+-..+.......+.+.|+++|.+++.
T Consensus 239 ~d~vid~~g~~~~~~~~~~~l~~~G~~v~~ 268 (355)
T cd08230 239 FDLIIEATGVPPLAFEALPALAPNGVVILF 268 (355)
T ss_pred CCEEEECcCCHHHHHHHHHHccCCcEEEEE
Confidence 999998887666778899999999998763
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0057 Score=46.01 Aligned_cols=55 Identities=24% Similarity=0.307 Sum_probs=40.3
Q ss_pred ChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHH
Q psy10572 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIK 93 (204)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~ 93 (204)
+..+...++... .+++..|||.-||+|..+.++.+... +.+|+|+++..++.|++
T Consensus 177 P~~l~~~lI~~~---t~~gdiVlDpF~GSGTT~~aa~~l~R---~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 177 PVELIERLIKAS---TNPGDIVLDPFAGSGTTAVAAEELGR---RYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -HHHHHHHHHHH---S-TT-EEEETT-TTTHHHHHHHHTT----EEEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHhh---hccceeeehhhhccChHHHHHHHcCC---eEEEEeCCHHHHHHhcC
Confidence 344455555444 58899999999999999988888654 89999999999998864
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >KOG1501|consensus | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0055 Score=50.28 Aligned_cols=57 Identities=19% Similarity=0.307 Sum_probs=46.6
Q ss_pred CEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEec
Q psy10572 52 ARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWN 114 (204)
Q Consensus 52 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d 114 (204)
..|||||+|+|.+++..++..+ + .++++|.-..|.+.|++...+++ -.+++.++..-
T Consensus 68 v~vLdigtGTGLLSmMAvraga-D-~vtA~EvfkPM~d~arkI~~kng----~SdkI~vInkr 124 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGA-D-SVTACEVFKPMVDLARKIMHKNG----MSDKINVINKR 124 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcC-C-eEEeehhhchHHHHHHHHHhcCC----Cccceeeeccc
Confidence 4799999999999999998863 2 79999999999999999987754 24567766543
|
|
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.011 Score=47.65 Aligned_cols=91 Identities=19% Similarity=0.168 Sum_probs=61.3
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCee
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYD 126 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D 126 (204)
+.++.+||-+|||. |.++..+++......+++++|.++..++.++. +.. ...+ .+ ......+|
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~~~----------~~~~-~~----~~~~~g~d 224 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-ADE----------TYLI-DD----IPEDLAVD 224 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-cCc----------eeeh-hh----hhhccCCc
Confidence 46788999999986 76777777652123589999999988888764 111 1001 11 11112489
Q ss_pred EEEECCC---ccchhHHHHHhcCCCcEEEEE
Q psy10572 127 IIHVSPS---YFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 127 ~v~~~~~---~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
+|+-..+ ....++.+.+.|+++|++++.
T Consensus 225 ~viD~~G~~~~~~~~~~~~~~l~~~G~iv~~ 255 (341)
T cd08237 225 HAFECVGGRGSQSAINQIIDYIRPQGTIGLM 255 (341)
T ss_pred EEEECCCCCccHHHHHHHHHhCcCCcEEEEE
Confidence 9987666 345678899999999999864
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.022 Score=42.52 Aligned_cols=118 Identities=16% Similarity=0.121 Sum_probs=63.5
Q ss_pred HHHHHHHHHhccC--CCCCEEEEEcCCCcHHHHHHHHHhC-CCceEEEEEcCHHHHHHHHHHhhh---------------
Q psy10572 36 IHAQMLELLKDKI--KPGARILDIGSGSGYLTACLAYMAG-PEGRVYGVEHVMELAESSIKNIDK--------------- 97 (204)
Q Consensus 36 ~~~~~~~~l~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~--------------- 97 (204)
+..++.+....++ ..+-++.|-+||+|++...+.-..+ .-..++|.|+++.+++.|++|+..
T Consensus 35 LAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~ 114 (246)
T PF11599_consen 35 LASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRE 114 (246)
T ss_dssp HHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHH
Confidence 3344444443333 3345999999999998776654432 224899999999999999999731
Q ss_pred ----cCcc-----------------cc-CccceEEEEecCCCCC-----CCCCCeeEEEECCCccc--------------
Q psy10572 98 ----GNSE-----------------LL-DQGRVQFVVWNGKHGY-----EREAPYDIIHVSPSYFT-------------- 136 (204)
Q Consensus 98 ----~~~~-----------------~~-~~~~~~~~~~d~~~~~-----~~~~~~D~v~~~~~~~~-------------- 136 (204)
.+.+ .. ......+...|+.+.. ......|+|+.+-++-+
T Consensus 115 ~~e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~ 194 (246)
T PF11599_consen 115 LYEQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVA 194 (246)
T ss_dssp HHHHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHH
T ss_pred HHHHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHH
Confidence 0000 00 1223556677766421 12234699999877633
Q ss_pred -hhHHHHHhcCCCcEEEE
Q psy10572 137 -IPQKLLDQLVPGGRMVM 153 (204)
Q Consensus 137 -~~~~~~~~Lk~gG~l~~ 153 (204)
+++.+..+|-.++++.+
T Consensus 195 ~ml~~l~~vLp~~sVV~v 212 (246)
T PF11599_consen 195 QMLNSLAPVLPERSVVAV 212 (246)
T ss_dssp HHHHHHHCCS-TT-EEEE
T ss_pred HHHHHHHhhCCCCcEEEE
Confidence 55788899954455544
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0087 Score=40.94 Aligned_cols=86 Identities=19% Similarity=0.181 Sum_probs=63.2
Q ss_pred CCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCC------CCCCCCCCeeEEEECCC
Q psy10572 60 GSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGK------HGYEREAPYDIIHVSPS 133 (204)
Q Consensus 60 G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~------~~~~~~~~~D~v~~~~~ 133 (204)
|.|..+..+++..+ ++++++|.++...+.+++.-.. .++..+-. ....+...+|+|+-..+
T Consensus 1 ~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~~~~~Ga~-----------~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG--AKVIATDRSEEKLELAKELGAD-----------HVIDYSDDDFVEQIRELTGGRGVDVVIDCVG 67 (130)
T ss_dssp HHHHHHHHHHHHTT--SEEEEEESSHHHHHHHHHTTES-----------EEEETTTSSHHHHHHHHTTTSSEEEEEESSS
T ss_pred ChHHHHHHHHHHcC--CEEEEEECCHHHHHHHHhhccc-----------ccccccccccccccccccccccceEEEEecC
Confidence 35788899999874 7999999999999998765321 11111111 11123357999999999
Q ss_pred ccchhHHHHHhcCCCcEEEEEecCC
Q psy10572 134 YFTIPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 134 ~~~~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
.....+....+|+++|.+++.-...
T Consensus 68 ~~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 68 SGDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp SHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred cHHHHHHHHHHhccCCEEEEEEccC
Confidence 8889999999999999998866554
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.011 Score=44.90 Aligned_cols=47 Identities=21% Similarity=0.273 Sum_probs=41.5
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhh
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~ 97 (204)
..++..|||.-||+|..+....+... +.+|+|+++...+.+.+++..
T Consensus 161 s~~g~~vlDpf~Gsgtt~~aa~~~~r---~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 161 THPNAIVLDPFAGSGSTCVAALQSGR---RYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred CCCCCEEEeCCCCCCHHHHHHHHcCC---CEEEEecCHHHHHHHHHHHHH
Confidence 57899999999999999888877653 899999999999999998865
|
|
| >PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.071 Score=38.28 Aligned_cols=115 Identities=17% Similarity=0.256 Sum_probs=76.2
Q ss_pred CcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccc
Q psy10572 28 GADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGR 107 (204)
Q Consensus 28 ~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~ 107 (204)
++++.++.....+++.+......+.+|+-|||-+-.....- ...+..+++-.|++...-... ++
T Consensus 3 sQfwYs~~T~~~l~~~l~~~~~~~~~iaclstPsl~~~l~~--~~~~~~~~~Lle~D~RF~~~~--------------~~ 66 (162)
T PF10237_consen 3 SQFWYSDETAEFLARELLDGALDDTRIACLSTPSLYEALKK--ESKPRIQSFLLEYDRRFEQFG--------------GD 66 (162)
T ss_pred cccccCHHHHHHHHHHHHHhcCCCCEEEEEeCcHHHHHHHh--hcCCCccEEEEeecchHHhcC--------------Cc
Confidence 56777888888888888865567789999999875554433 222456899999987643321 12
Q ss_pred eEEEEecCCCCC-CC---CCCeeEEEECCCccc------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 108 VQFVVWNGKHGY-ER---EAPYDIIHVSPSYFT------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 108 ~~~~~~d~~~~~-~~---~~~~D~v~~~~~~~~------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
.|+.-|..... .+ .++||+|++++++-. ....+..++++++.++++++...
T Consensus 67 -~F~fyD~~~p~~~~~~l~~~~d~vv~DPPFl~~ec~~k~a~ti~~L~k~~~kii~~Tg~~~ 127 (162)
T PF10237_consen 67 -EFVFYDYNEPEELPEELKGKFDVVVIDPPFLSEECLTKTAETIRLLLKPGGKIILCTGEEM 127 (162)
T ss_pred -ceEECCCCChhhhhhhcCCCceEEEECCCCCCHHHHHHHHHHHHHHhCccceEEEecHHHH
Confidence 34444433211 11 468999999999842 22455566788899998776554
|
This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ). |
| >KOG1562|consensus | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.012 Score=45.84 Aligned_cols=103 Identities=18% Similarity=0.171 Sum_probs=75.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC--CCCCCee
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY--EREAPYD 126 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D 126 (204)
...+++|-||.|.|.......++- .-.++.-+|++...++..++.+..-.. ....+++.+.-+|..... ...++||
T Consensus 120 ~npkkvlVVgggDggvlrevikH~-~ve~i~~~eiD~~Vie~sk~y~p~la~-gy~~~~v~l~iGDG~~fl~~~~~~~~d 197 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKHK-SVENILLCEIDENVIESSKQYLPTLAC-GYEGKKVKLLIGDGFLFLEDLKENPFD 197 (337)
T ss_pred CCCCeEEEEecCCccceeeeeccc-cccceeeehhhHHHHHHHHHHhHHHhc-ccCCCceEEEeccHHHHHHHhccCCce
Confidence 345689999999999988887773 335889999999999999988765110 023467888888866322 3358899
Q ss_pred EEEECCCccc----------hhHHHHHhcCCCcEEEE
Q psy10572 127 IIHVSPSYFT----------IPQKLLDQLVPGGRMVM 153 (204)
Q Consensus 127 ~v~~~~~~~~----------~~~~~~~~Lk~gG~l~~ 153 (204)
+|+....-+. ..+.+.+.||++|+++.
T Consensus 198 Vii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~ 234 (337)
T KOG1562|consen 198 VIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCT 234 (337)
T ss_pred EEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEE
Confidence 9988754432 34678899999999977
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.039 Score=45.68 Aligned_cols=89 Identities=17% Similarity=0.036 Sum_probs=63.0
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCee
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYD 126 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D 126 (204)
..++.+|+-+|+|+ |......++..+ ++|+.+|.++...+.|+..- ......+ +. . ...|
T Consensus 199 ~l~GktVvViG~G~IG~~va~~ak~~G--a~ViV~d~d~~R~~~A~~~G------------~~~~~~~--e~-v--~~aD 259 (413)
T cd00401 199 MIAGKVAVVAGYGDVGKGCAQSLRGQG--ARVIVTEVDPICALQAAMEG------------YEVMTME--EA-V--KEGD 259 (413)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEECChhhHHHHHhcC------------CEEccHH--HH-H--cCCC
Confidence 35789999999998 777777777653 58999999998877776421 1111111 11 1 3479
Q ss_pred EEEECCCccchhHH-HHHhcCCCcEEEEEe
Q psy10572 127 IIHVSPSYFTIPQK-LLDQLVPGGRMVMPV 155 (204)
Q Consensus 127 ~v~~~~~~~~~~~~-~~~~Lk~gG~l~~~~ 155 (204)
+|+...+....+.. ....+++||+++..-
T Consensus 260 VVI~atG~~~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 260 IFVTTTGNKDIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred EEEECCCCHHHHHHHHHhcCCCCcEEEEeC
Confidence 99988877776665 489999999987643
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.023 Score=45.12 Aligned_cols=88 Identities=19% Similarity=0.170 Sum_probs=60.9
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 49 KPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 49 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
.++.+++-+|||. |.++..+++..+ ...++++|.++..++.+.... ++ |.... ....+|+
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G-~~~v~~~~~~~~rl~~a~~~~--------------~i--~~~~~--~~~g~Dv 203 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAG-GSPPAVWETNPRRRDGATGYE--------------VL--DPEKD--PRRDYRA 203 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHhhhhcc--------------cc--Chhhc--cCCCCCE
Confidence 4567888899886 888888888763 224777888887766654310 01 10000 1246999
Q ss_pred EEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 128 IHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 128 v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
|+-..+.....+.+.+.|+++|++++.-
T Consensus 204 vid~~G~~~~~~~~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 204 IYDASGDPSLIDTLVRRLAKGGEIVLAG 231 (308)
T ss_pred EEECCCCHHHHHHHHHhhhcCcEEEEEe
Confidence 9988887777899999999999998643
|
|
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.061 Score=43.16 Aligned_cols=90 Identities=19% Similarity=0.132 Sum_probs=62.0
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCee
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYD 126 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D 126 (204)
++++.+||-.|+|. |.++..+++..+ +++++++.++...+.+++.-.. . ++... . .....+|
T Consensus 163 ~~~g~~VlV~G~g~iG~~a~~~a~~~G--~~vi~~~~~~~~~~~a~~~Ga~---------~--vi~~~--~--~~~~~~d 225 (329)
T TIGR02822 163 LPPGGRLGLYGFGGSAHLTAQVALAQG--ATVHVMTRGAAARRLALALGAA---------S--AGGAY--D--TPPEPLD 225 (329)
T ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHCC--CeEEEEeCChHHHHHHHHhCCc---------e--ecccc--c--cCcccce
Confidence 57889999999875 666677777653 5799999999888877664221 1 11100 1 1123588
Q ss_pred EEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 127 IIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 127 ~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
+++.............+.|+++|++++.
T Consensus 226 ~~i~~~~~~~~~~~~~~~l~~~G~~v~~ 253 (329)
T TIGR02822 226 AAILFAPAGGLVPPALEALDRGGVLAVA 253 (329)
T ss_pred EEEECCCcHHHHHHHHHhhCCCcEEEEE
Confidence 7776655566788899999999999764
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >KOG1253|consensus | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.0059 Score=50.71 Aligned_cols=106 Identities=13% Similarity=0.088 Sum_probs=81.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC----CCCCCC
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG----YEREAP 124 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~ 124 (204)
.++.+|||.=|++|.-++..++.++.-..+++.|.++..++..+.+++.+.. ...++..+.|+... ......
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v----~~ive~~~~DA~~lM~~~~~~~~~ 183 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGV----EDIVEPHHSDANVLMYEHPMVAKF 183 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCc----hhhcccccchHHHHHHhccccccc
Confidence 5667999999999999999999985445899999999999999999987641 23455566665422 122367
Q ss_pred eeEEEECCC--ccchhHHHHHhcCCCcEEEEEecCC
Q psy10572 125 YDIIHVSPS--YFTIPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 125 ~D~v~~~~~--~~~~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
||+|-.++- ...+++.+.+.++.||+|.+++-..
T Consensus 184 FDvIDLDPyGs~s~FLDsAvqav~~gGLL~vT~TD~ 219 (525)
T KOG1253|consen 184 FDVIDLDPYGSPSPFLDSAVQAVRDGGLLCVTCTDM 219 (525)
T ss_pred cceEecCCCCCccHHHHHHHHHhhcCCEEEEEecch
Confidence 999987753 3457899999999999999866443
|
|
| >KOG0822|consensus | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.031 Score=47.04 Aligned_cols=96 Identities=17% Similarity=0.128 Sum_probs=68.5
Q ss_pred CEEEEEcCCCcHHHHHHHHH---hCCCceEEEEEcCHHHHHHHHHH-hhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 52 ARILDIGSGSGYLTACLAYM---AGPEGRVYGVEHVMELAESSIKN-IDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 52 ~~vLdiG~G~G~~~~~l~~~---~~~~~~v~~vD~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
..|+-+|+|-|-+.....+. .....+++++|.+|.++.-.+.. ...+ ..+++++..|......+....|+
T Consensus 369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W------~~~Vtii~~DMR~w~ap~eq~DI 442 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECW------DNRVTIISSDMRKWNAPREQADI 442 (649)
T ss_pred EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhh------cCeeEEEeccccccCCchhhccc
Confidence 46888999999887655443 22356899999999988766553 2222 35899999998876544478999
Q ss_pred EEEC--------CCccchhHHHHHhcCCCcEEEE
Q psy10572 128 IHVS--------PSYFTIPQKLLDQLVPGGRMVM 153 (204)
Q Consensus 128 v~~~--------~~~~~~~~~~~~~Lk~gG~l~~ 153 (204)
+++- ...++.++.+.+.|||+|+.|=
T Consensus 443 ~VSELLGSFGDNELSPECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 443 IVSELLGSFGDNELSPECLDGAQKFLKPDGISIP 476 (649)
T ss_pred hHHHhhccccCccCCHHHHHHHHhhcCCCceEcc
Confidence 8652 2234567888899999988754
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.077 Score=43.57 Aligned_cols=99 Identities=18% Similarity=0.230 Sum_probs=65.3
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEec-CCC---CCCCC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWN-GKH---GYERE 122 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d-~~~---~~~~~ 122 (204)
+.++.+||..|||. |..+..+++..+ ..++++++.++...+.++..... ..+.....+ ... .....
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g-~~~vi~~~~~~~~~~~~~~~~~~--------~vi~~~~~~~~~~~l~~~~~~ 252 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLG-AERVIAIDRVPERLEMARSHLGA--------ETINFEEVDDVVEALRELTGG 252 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHcCCc--------EEEcCCcchHHHHHHHHHcCC
Confidence 57788999999987 888888888863 23699999999988888764211 111111111 110 11223
Q ss_pred CCeeEEEECCCc---------------------cchhHHHHHhcCCCcEEEEEe
Q psy10572 123 APYDIIHVSPSY---------------------FTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 123 ~~~D~v~~~~~~---------------------~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
..+|+|+..... ....+.+.+.++++|.++..-
T Consensus 253 ~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 253 RGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred CCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 468988775432 235678889999999998753
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >KOG1099|consensus | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.016 Score=43.66 Aligned_cols=95 Identities=14% Similarity=0.075 Sum_probs=65.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCC----Cc----eEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC--
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGP----EG----RVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG-- 118 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~----~~----~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~-- 118 (204)
..-.+++|+++.+|.++..+.+.+.. +. .+++||+.+-+ ..+.+.-+++|+...
T Consensus 40 ~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma----------------PI~GV~qlq~DIT~~st 103 (294)
T KOG1099|consen 40 EGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA----------------PIEGVIQLQGDITSAST 103 (294)
T ss_pred hhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC----------------ccCceEEeecccCCHhH
Confidence 34468999999999999999887632 11 38999976521 135677788887632
Q ss_pred ------CCCCCCeeEEEECCCc-----cchh------------HHHHHhcCCCcEEEEEecCCC
Q psy10572 119 ------YEREAPYDIIHVSPSY-----FTIP------------QKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 119 ------~~~~~~~D~v~~~~~~-----~~~~------------~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
.+...+.|+|+++..- |++. .-...+|||||.|+..+.-+.
T Consensus 104 ae~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~ 167 (294)
T KOG1099|consen 104 AEAIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGR 167 (294)
T ss_pred HHHHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhccC
Confidence 2455789999998543 3321 233478999999998776544
|
|
| >KOG2352|consensus | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.012 Score=49.02 Aligned_cols=105 Identities=19% Similarity=0.198 Sum_probs=74.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCC-------CCCC
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKH-------GYER 121 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~-------~~~~ 121 (204)
..+.++|-+|-|.|.+...+...+ +...+++++++|.+++.|..++.-.. ..+..+.-.|..+ ....
T Consensus 294 ~~~~~~lvvg~ggG~l~sfl~~~~-p~~~i~~ve~dP~~l~va~q~f~f~q-----~~r~~V~i~dGl~~~~~~~k~~~~ 367 (482)
T KOG2352|consen 294 DTGGKQLVVGLGGGGLPSFLHMSL-PKFQITAVEIDPEMLEVATQYFGFMQ-----SDRNKVHIADGLDFLQRTAKSQQE 367 (482)
T ss_pred cccCcEEEEecCCCccccceeeec-CccceeEEEEChhHhhccHhhhchhh-----hhhhhhhHhhchHHHHHHhhcccc
Confidence 455689999999999999998888 67799999999999999999875411 1234444444431 1123
Q ss_pred CCCeeEEEECCCccc---------------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 122 EAPYDIIHVSPSYFT---------------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 122 ~~~~D~v~~~~~~~~---------------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
...||+++.+-.-.+ .+......|.|.|.+++......
T Consensus 368 ~~~~dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~ 420 (482)
T KOG2352|consen 368 DICPDVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRN 420 (482)
T ss_pred ccCCcEEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCC
Confidence 467999977532211 34677789999999998776554
|
|
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.044 Score=44.14 Aligned_cols=76 Identities=24% Similarity=0.340 Sum_probs=54.7
Q ss_pred ccccc-CCcccCChHHHHHHHHHHh--------ccCC-CCCEEEEEcCCCcHHHHHHHHHh---CC----CceEEEEEcC
Q psy10572 22 SRQIG-YGADISSPHIHAQMLELLK--------DKIK-PGARILDIGSGSGYLTACLAYMA---GP----EGRVYGVEHV 84 (204)
Q Consensus 22 ~~~~~-~~~~~~~~~~~~~~~~~l~--------~~~~-~~~~vLdiG~G~G~~~~~l~~~~---~~----~~~v~~vD~~ 84 (204)
..++| .|-+++.+.+.+.+-+.+. .+.. ....++|+|.|.|.++..+++.. .| ..++.-||+|
T Consensus 39 ~~~~G~~GDFiTApels~lFGella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s 118 (370)
T COG1565 39 AVKIGRKGDFITAPELSQLFGELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPS 118 (370)
T ss_pred chhccccCCeeechhHHHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecC
Confidence 34444 5678888887665544444 2223 34589999999999998887754 12 4689999999
Q ss_pred HHHHHHHHHHhhh
Q psy10572 85 MELAESSIKNIDK 97 (204)
Q Consensus 85 ~~~~~~a~~~~~~ 97 (204)
+.+...-+++++.
T Consensus 119 ~~L~~~Qk~~L~~ 131 (370)
T COG1565 119 PELRARQKETLKA 131 (370)
T ss_pred HHHHHHHHHHHhc
Confidence 9998888888765
|
|
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.035 Score=43.43 Aligned_cols=99 Identities=20% Similarity=0.214 Sum_probs=63.8
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 49 KPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 49 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
.++.+||-+|+|+ |.++..+++..+ ...++++|.++...+.+++.-...- +.... . .+..........+|+
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G-~~~Vi~~~~~~~r~~~a~~~Ga~~~---i~~~~---~-~~~~~~~~~~~g~d~ 190 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAG-AARVVAADPSPDRRELALSFGATAL---AEPEV---L-AERQGGLQNGRGVDV 190 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHcCCcEe---cCchh---h-HHHHHHHhCCCCCCE
Confidence 5788999999886 777777887763 2248899999888887765321100 00000 0 000001112245999
Q ss_pred EEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 128 IHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 128 v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
++-........+.+.+.|+++|++++.-
T Consensus 191 vid~~G~~~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 191 ALEFSGATAAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred EEECCCChHHHHHHHHHhcCCCEEEEec
Confidence 9987766777888999999999998744
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.029 Score=45.54 Aligned_cols=98 Identities=15% Similarity=0.065 Sum_probs=63.9
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCC---CCCCCC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKH---GYEREA 123 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~ 123 (204)
+.++.+||-.|+|. |..+..+++..+ ..+++++|.++...+.+++.-.. .-+.....+... ......
T Consensus 174 ~~~g~~VlV~G~g~vG~~a~~~ak~~G-~~~Vi~~~~~~~~~~~~~~~Ga~--------~~i~~~~~~~~~~i~~~~~~~ 244 (358)
T TIGR03451 174 VKRGDSVAVIGCGGVGDAAIAGAALAG-ASKIIAVDIDDRKLEWAREFGAT--------HTVNSSGTDPVEAIRALTGGF 244 (358)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHHcCCc--------eEEcCCCcCHHHHHHHHhCCC
Confidence 57889999999875 777777888753 22599999999988888643111 000001111110 111223
Q ss_pred CeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 124 PYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 124 ~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
.+|+|+-........+.+...++++|++++.
T Consensus 245 g~d~vid~~g~~~~~~~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 245 GADVVIDAVGRPETYKQAFYARDLAGTVVLV 275 (358)
T ss_pred CCCEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 5899987766656778888999999999764
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >KOG2798|consensus | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.045 Score=43.17 Aligned_cols=54 Identities=24% Similarity=0.240 Sum_probs=37.8
Q ss_pred ChHHHHHHHHHHhccCCC------CCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHH
Q psy10572 33 SPHIHAQMLELLKDKIKP------GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAE 89 (204)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~------~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~ 89 (204)
.......+++.+..+.++ +.+||--|||.|.++..++..+. .+-|-|.|--|+-
T Consensus 127 Rd~~ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~---~~qGNEfSy~Mli 186 (369)
T KOG2798|consen 127 RDQLYKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGF---KCQGNEFSYFMLI 186 (369)
T ss_pred hhhhhhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcc---cccccHHHHHHHH
Confidence 334455566666644333 56899999999999999999763 5566677766653
|
|
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.023 Score=44.55 Aligned_cols=70 Identities=17% Similarity=0.062 Sum_probs=50.4
Q ss_pred EEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCC--CCCeeEEEE
Q psy10572 53 RILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYER--EAPYDIIHV 130 (204)
Q Consensus 53 ~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~D~v~~ 130 (204)
+++|+.||.|.++.-+.... - ..+.++|+++.+++..+.+... .++.+|+...... ...+|+++.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G-~-~~v~a~e~~~~a~~~~~~N~~~-----------~~~~~Di~~~~~~~~~~~~D~l~~ 68 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAG-F-EIVAANEIDKSAAETYEANFPN-----------KLIEGDITKIDEKDFIPDIDLLTG 68 (275)
T ss_pred cEEEEccCcchHHHHHHHcC-C-EEEEEEeCCHHHHHHHHHhCCC-----------CCccCccccCchhhcCCCCCEEEe
Confidence 68999999999988777653 1 2688899999999888877532 1345555433221 256999999
Q ss_pred CCCcc
Q psy10572 131 SPSYF 135 (204)
Q Consensus 131 ~~~~~ 135 (204)
++++.
T Consensus 69 gpPCq 73 (275)
T cd00315 69 GFPCQ 73 (275)
T ss_pred CCCCh
Confidence 88774
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.096 Score=40.31 Aligned_cols=126 Identities=15% Similarity=0.188 Sum_probs=70.3
Q ss_pred ccCChHHHHHHHHHHhccC--CCCCEEEEEcCCCcHHHHHHHHHh---C-CCceEEEEEcCHH-----------------
Q psy10572 30 DISSPHIHAQMLELLKDKI--KPGARILDIGSGSGYLTACLAYMA---G-PEGRVYGVEHVME----------------- 86 (204)
Q Consensus 30 ~~~~~~~~~~~~~~l~~~~--~~~~~vLdiG~G~G~~~~~l~~~~---~-~~~~v~~vD~~~~----------------- 86 (204)
.+........+...+...+ .-...|+|+||-.|..++.+...+ + +.-++++.|.-..
T Consensus 52 tm~g~~Rl~~L~~~~~~v~~~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~ 131 (248)
T PF05711_consen 52 TMIGRERLDNLYQAVEQVLAEDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEF 131 (248)
T ss_dssp -SSHHHHHHHHHHHHHHCCHTTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTC
T ss_pred cccCHHHHHHHHHHHHHHHhcCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhh
Confidence 3444444555555444333 455699999999998776654432 1 2346888873221
Q ss_pred ---------HHHHHHHHhhhcCccccCccceEEEEecCCCCCC--CCCCeeEEEECCCccc----hhHHHHHhcCCCcEE
Q psy10572 87 ---------LAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE--REAPYDIIHVSPSYFT----IPQKLLDQLVPGGRM 151 (204)
Q Consensus 87 ---------~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~D~v~~~~~~~~----~~~~~~~~Lk~gG~l 151 (204)
..+..+.++...+ +..+++.++.+.+.+..+ +..++-++.++..+.. .++.++..|.|||++
T Consensus 132 ~~~~~~~~~s~e~V~~n~~~~g---l~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlYesT~~aLe~lyprl~~GGiI 208 (248)
T PF05711_consen 132 HEYNGYLAVSLEEVRENFARYG---LLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDLYESTKDALEFLYPRLSPGGII 208 (248)
T ss_dssp CGCCHHCTHHHHHHHHCCCCTT---TSSTTEEEEES-HHHHCCC-TT--EEEEEE---SHHHHHHHHHHHGGGEEEEEEE
T ss_pred hhcccccccCHHHHHHHHHHcC---CCcccEEEECCcchhhhccCCCccEEEEEEeccchHHHHHHHHHHHhhcCCCeEE
Confidence 2333444443322 234689999998764433 3356788888877654 557888999999999
Q ss_pred EEEecCC
Q psy10572 152 VMPVGEP 158 (204)
Q Consensus 152 ~~~~~~~ 158 (204)
++.-+..
T Consensus 209 i~DDY~~ 215 (248)
T PF05711_consen 209 IFDDYGH 215 (248)
T ss_dssp EESSTTT
T ss_pred EEeCCCC
Confidence 9976655
|
TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A. |
| >KOG1227|consensus | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.0064 Score=47.46 Aligned_cols=95 Identities=19% Similarity=0.179 Sum_probs=66.5
Q ss_pred CCCCEEEEEcCCCcHHHH-HHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 49 KPGARILDIGSGSGYLTA-CLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~-~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
..+..|.|+-+|-|+++. .+.+.. ...|+++|.+|..++..++++..+. ...+..+..+|.... .+....|.
T Consensus 193 c~~eviVDLYAGIGYFTlpflV~ag--Ak~V~A~EwNp~svEaLrR~~~~N~----V~~r~~i~~gd~R~~-~~~~~Adr 265 (351)
T KOG1227|consen 193 CDGEVIVDLYAGIGYFTLPFLVTAG--AKTVFACEWNPWSVEALRRNAEANN----VMDRCRITEGDNRNP-KPRLRADR 265 (351)
T ss_pred cccchhhhhhcccceEEeehhhccC--ccEEEEEecCHHHHHHHHHHHHhcc----hHHHHHhhhcccccc-Cccccchh
Confidence 456899999999999998 555543 3489999999999999999988754 234555666774433 34567888
Q ss_pred EEECCCc--cchhHHHHHhcCCCcE
Q psy10572 128 IHVSPSY--FTIPQKLLDQLVPGGR 150 (204)
Q Consensus 128 v~~~~~~--~~~~~~~~~~Lk~gG~ 150 (204)
|...... ..---.+.++|||.|-
T Consensus 266 VnLGLlPSse~~W~~A~k~Lk~egg 290 (351)
T KOG1227|consen 266 VNLGLLPSSEQGWPTAIKALKPEGG 290 (351)
T ss_pred eeeccccccccchHHHHHHhhhcCC
Confidence 8765322 2222456677777654
|
|
| >KOG2793|consensus | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.096 Score=40.23 Aligned_cols=107 Identities=21% Similarity=0.208 Sum_probs=61.1
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccC-ccceEEEEecCCCCC---CCCCC-
Q psy10572 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLD-QGRVQFVVWNGKHGY---EREAP- 124 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~d~~~~~---~~~~~- 124 (204)
...+|||+|+|+|..++.++...+ +++.-.|.. ..++....+...+...... ...+.+...++.... .-...
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~--~~v~ltD~~-~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~ 162 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLG--AEVVLTDLP-KVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNP 162 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhc--ceeccCCch-hhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCc
Confidence 456899999999988888887653 477776743 3344433332221100000 113444444433211 11123
Q ss_pred eeEEEECCCc------cchhHHHHHhcCCCcEEEEEecCCC
Q psy10572 125 YDIIHVSPSY------FTIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 125 ~D~v~~~~~~------~~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
+|+|+...+. ..+...+...|..++.+++.+.-..
T Consensus 163 ~DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~lr~ 203 (248)
T KOG2793|consen 163 FDLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPLRR 203 (248)
T ss_pred ccEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEeccc
Confidence 8988876555 3466788888889997777665443
|
|
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.12 Score=41.11 Aligned_cols=95 Identities=22% Similarity=0.231 Sum_probs=64.3
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCC-----CCCC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKH-----GYER 121 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~-----~~~~ 121 (204)
+.++.+||..|+|. |..+..+++..+ .++++++.++...+.++..-. . .++...-.. ....
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~G--~~V~~~~~s~~~~~~~~~~g~---------~--~~~~~~~~~~~~~~~~~~ 229 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAMG--AAVIAVDIKEEKLELAKELGA---------D--EVLNSLDDSPKDKKAAGL 229 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHHhCC---------C--EEEcCCCcCHHHHHHHhc
Confidence 56778999888774 778888888753 579999999988877754211 1 111110000 0123
Q ss_pred CCCeeEEEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 122 EAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 122 ~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
...+|+++.........+.+.+.|+++|.++...
T Consensus 230 ~~~~D~vid~~g~~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 230 GGGFDVIFDFVGTQPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred CCCceEEEECCCCHHHHHHHHHHhhcCCEEEEEC
Confidence 3569999877666667888999999999998754
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.07 Score=38.53 Aligned_cols=101 Identities=15% Similarity=0.126 Sum_probs=63.1
Q ss_pred EEcCCCcHHHHHHHHHhCCCceEEEEEcCHH--HHHH---HHHHhhhcCccccCccceEEEE-ecCCCC--CC--CCCCe
Q psy10572 56 DIGSGSGYLTACLAYMAGPEGRVYGVEHVME--LAES---SIKNIDKGNSELLDQGRVQFVV-WNGKHG--YE--REAPY 125 (204)
Q Consensus 56 diG~G~G~~~~~l~~~~~~~~~v~~vD~~~~--~~~~---a~~~~~~~~~~~~~~~~~~~~~-~d~~~~--~~--~~~~~ 125 (204)
-+|=|.=.++..+++..+....+++.-.+.. ..+. +..++.. +...++.+.. .|+... .+ ....|
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~-----L~~~g~~V~~~VDat~l~~~~~~~~~~F 76 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEE-----LRELGVTVLHGVDATKLHKHFRLKNQRF 76 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHH-----HhhcCCccccCCCCCcccccccccCCcC
Confidence 3677888889999998754556766644333 3222 2233322 1223444433 343322 12 45789
Q ss_pred eEEEECCCccc-------------------hhHHHHHhcCCCcEEEEEecCCCCc
Q psy10572 126 DIIHVSPSYFT-------------------IPQKLLDQLVPGGRMVMPVGEPFKG 161 (204)
Q Consensus 126 D~v~~~~~~~~-------------------~~~~~~~~Lk~gG~l~~~~~~~~~~ 161 (204)
|.|+.|.|... +++.+..+|+++|.+.++...+++.
T Consensus 77 DrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py 131 (166)
T PF10354_consen 77 DRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPY 131 (166)
T ss_pred CEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCC
Confidence 99999977643 3367779999999999999888764
|
|
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.035 Score=45.30 Aligned_cols=97 Identities=16% Similarity=0.116 Sum_probs=63.8
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCC---CCCCCC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKH---GYEREA 123 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~ 123 (204)
+.++.+||-.|+|. |.++..+++..+ ..+|+++|.++...+.+++.-... -+.....+..+ .... +
T Consensus 189 i~~g~~VlV~G~G~vG~~a~~lak~~G-~~~Vi~~~~~~~r~~~a~~~Ga~~--------~i~~~~~~~~~~i~~~~~-~ 258 (371)
T cd08281 189 VRPGQSVAVVGLGGVGLSALLGAVAAG-ASQVVAVDLNEDKLALARELGATA--------TVNAGDPNAVEQVRELTG-G 258 (371)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCcEEEEcCCHHHHHHHHHcCCce--------EeCCCchhHHHHHHHHhC-C
Confidence 57788999999875 777777787753 226999999999888886532110 00000111110 0112 2
Q ss_pred CeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 124 PYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 124 ~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
.+|+|+-........+.+.+.|+++|.+++.
T Consensus 259 g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~ 289 (371)
T cd08281 259 GVDYAFEMAGSVPALETAYEITRRGGTTVTA 289 (371)
T ss_pred CCCEEEECCCChHHHHHHHHHHhcCCEEEEE
Confidence 6899998776666788889999999998864
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.076 Score=42.59 Aligned_cols=97 Identities=20% Similarity=0.141 Sum_probs=62.9
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCce-EEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecC--CCCCCCCC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGR-VYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNG--KHGYEREA 123 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~--~~~~~~~~ 123 (204)
+.++.+||-.|+|. |.++..+++..+ ++ +++++.++...+.+++.-... -+.....+. ........
T Consensus 161 ~~~g~~vlV~G~G~vG~~~~~~ak~~G--~~~vi~~~~~~~~~~~~~~~ga~~--------~i~~~~~~~~~~~~~~~~~ 230 (339)
T cd08239 161 VSGRDTVLVVGAGPVGLGALMLARALG--AEDVIGVDPSPERLELAKALGADF--------VINSGQDDVQEIRELTSGA 230 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CCEEEEECCCHHHHHHHHHhCCCE--------EEcCCcchHHHHHHHhCCC
Confidence 56788999998875 677777777753 45 999999988887775432110 000000110 00111224
Q ss_pred CeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 124 PYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 124 ~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
.+|+|+-............+.|+++|++++.
T Consensus 231 ~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~ 261 (339)
T cd08239 231 GADVAIECSGNTAARRLALEAVRPWGRLVLV 261 (339)
T ss_pred CCCEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 6999997777666667888999999999864
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.11 Score=44.27 Aligned_cols=89 Identities=24% Similarity=0.292 Sum_probs=59.7
Q ss_pred CCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCC-----------
Q psy10572 50 PGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKH----------- 117 (204)
Q Consensus 50 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~----------- 117 (204)
++.+++-+|+|. |..+..+++..+ +.++++|.++..++.++.. .. +++..+..+
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lG--A~V~v~d~~~~rle~a~~l-Ga-----------~~v~v~~~e~g~~~~gYa~~ 228 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLG--AIVRAFDTRPEVKEQVQSM-GA-----------EFLELDFKEEGGSGDGYAKV 228 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHc-CC-----------eEEeccccccccccccceee
Confidence 567999999997 788888888764 4799999999988877652 11 111111100
Q ss_pred ------------CCCCCCCeeEEEECC-----Cccc-hhHHHHHhcCCCcEEE
Q psy10572 118 ------------GYEREAPYDIIHVSP-----SYFT-IPQKLLDQLVPGGRMV 152 (204)
Q Consensus 118 ------------~~~~~~~~D~v~~~~-----~~~~-~~~~~~~~Lk~gG~l~ 152 (204)
....-..+|+||... ..+. +.++..+.+|||+.++
T Consensus 229 ~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 229 MSEEFIAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIV 281 (511)
T ss_pred cCHHHHHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEE
Confidence 000124699998776 2222 4588899999998876
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.03 Score=36.99 Aligned_cols=31 Identities=23% Similarity=0.352 Sum_probs=24.6
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEc
Q psy10572 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEH 83 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~ 83 (204)
+....+|+|||+|.+.-.|....- .=+|+|.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy---~G~GiD~ 88 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGY---PGWGIDA 88 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCC---Ccccccc
Confidence 456899999999999888887543 5678885
|
; GO: 0008168 methyltransferase activity |
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.053 Score=44.41 Aligned_cols=94 Identities=17% Similarity=0.146 Sum_probs=64.4
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEec-----CCC---C
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWN-----GKH---G 118 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d-----~~~---~ 118 (204)
+.++.+||-+|+|. |.++..+++..+ ..+|+++|.++..++.+++.-. . .++... ..+ .
T Consensus 196 ~~~g~~VlV~G~G~vG~~a~q~ak~~G-~~~Vi~~~~~~~r~~~a~~~Ga---------~--~~i~~~~~~~~~~~~v~~ 263 (381)
T PLN02740 196 VQAGSSVAIFGLGAVGLAVAEGARARG-ASKIIGVDINPEKFEKGKEMGI---------T--DFINPKDSDKPVHERIRE 263 (381)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCC-CCcEEEEcCChHHHHHHHHcCC---------c--EEEecccccchHHHHHHH
Confidence 67889999999886 777788888763 2269999999998888865311 1 111111 110 1
Q ss_pred CCCCCCeeEEEECCCccchhHHHHHhcCCC-cEEEEE
Q psy10572 119 YEREAPYDIIHVSPSYFTIPQKLLDQLVPG-GRMVMP 154 (204)
Q Consensus 119 ~~~~~~~D~v~~~~~~~~~~~~~~~~Lk~g-G~l~~~ 154 (204)
... +.+|+|+-..+...........++++ |++++.
T Consensus 264 ~~~-~g~dvvid~~G~~~~~~~a~~~~~~g~G~~v~~ 299 (381)
T PLN02740 264 MTG-GGVDYSFECAGNVEVLREAFLSTHDGWGLTVLL 299 (381)
T ss_pred HhC-CCCCEEEECCCChHHHHHHHHhhhcCCCEEEEE
Confidence 112 26999998888777888888999996 887663
|
|
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.087 Score=40.31 Aligned_cols=99 Identities=26% Similarity=0.290 Sum_probs=63.9
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC--CCCCCCe
Q psy10572 49 KPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG--YEREAPY 125 (204)
Q Consensus 49 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~ 125 (204)
.++.+||..|+|+ |..+..+++..+ .++++++.++...+.++...... -+.....+.... ......+
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~~g~~~--------~~~~~~~~~~~~~~~~~~~~~ 202 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAG--ARVIVTDRSDEKLELAKELGADH--------VIDYKEEDLEEELRLTGGGGA 202 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHHhCCce--------eccCCcCCHHHHHHHhcCCCC
Confidence 6788999999996 666777777653 68999999988777765431110 000000000000 1123569
Q ss_pred eEEEECCCccchhHHHHHhcCCCcEEEEEecC
Q psy10572 126 DIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 126 D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
|+++...........+.+.|+++|.++..-..
T Consensus 203 d~vi~~~~~~~~~~~~~~~l~~~G~~v~~~~~ 234 (271)
T cd05188 203 DVVIDAVGGPETLAQALRLLRPGGRIVVVGGT 234 (271)
T ss_pred CEEEECCCCHHHHHHHHHhcccCCEEEEEccC
Confidence 99998766546778889999999999875433
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.078 Score=42.72 Aligned_cols=95 Identities=17% Similarity=0.135 Sum_probs=61.2
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe---cC--CCCCCC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW---NG--KHGYER 121 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---d~--~~~~~~ 121 (204)
..++.+||-.|+|+ |.++..+++..+ ...+++++.++...+.++..-.. .++.. +. ......
T Consensus 158 ~~~g~~vlV~G~g~vG~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~~Ga~-----------~~i~~~~~~~~~~~~~~~ 225 (347)
T PRK10309 158 GCEGKNVIIIGAGTIGLLAIQCAVALG-AKSVTAIDINSEKLALAKSLGAM-----------QTFNSREMSAPQIQSVLR 225 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHHHcCCc-----------eEecCcccCHHHHHHHhc
Confidence 46788999999876 777777888763 22478899888887777542111 11111 10 001112
Q ss_pred CCCee-EEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 122 EAPYD-IIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 122 ~~~~D-~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
...+| +++-..+....+....+.|+++|.+++.
T Consensus 226 ~~~~d~~v~d~~G~~~~~~~~~~~l~~~G~iv~~ 259 (347)
T PRK10309 226 ELRFDQLILETAGVPQTVELAIEIAGPRAQLALV 259 (347)
T ss_pred CCCCCeEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 24577 6666666566778899999999998874
|
|
| >PTZ00357 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.19 Score=44.08 Aligned_cols=97 Identities=16% Similarity=0.125 Sum_probs=61.7
Q ss_pred EEEEEcCCCcHHHHHHHHHh---CCCceEEEEEcCHHHHHHHHHHhhhcCcccc-----CccceEEEEecCCCCCCC---
Q psy10572 53 RILDIGSGSGYLTACLAYMA---GPEGRVYGVEHVMELAESSIKNIDKGNSELL-----DQGRVQFVVWNGKHGYER--- 121 (204)
Q Consensus 53 ~vLdiG~G~G~~~~~l~~~~---~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~~d~~~~~~~--- 121 (204)
.|+-+|+|-|-+.....+.. +-..++++||.++..+.....+..... .|- ....++++..|......+
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~e-eW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDP-EWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhccc-ccccccccCCCeEEEEeCccccccccccc
Confidence 58999999998876555543 335689999999765444444432211 111 124689999998754322
Q ss_pred --------CCCeeEEEE--------CCCccchhHHHHHhcCC----CcE
Q psy10572 122 --------EAPYDIIHV--------SPSYFTIPQKLLDQLVP----GGR 150 (204)
Q Consensus 122 --------~~~~D~v~~--------~~~~~~~~~~~~~~Lk~----gG~ 150 (204)
-+++|+|++ |...++.++.+.+.||+ +|+
T Consensus 782 ~s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccccccccceehHhhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 136999986 22234466777788876 776
|
|
| >COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.43 Score=38.33 Aligned_cols=103 Identities=19% Similarity=0.136 Sum_probs=73.2
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe----cCCCC--CC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW----NGKHG--YE 120 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----d~~~~--~~ 120 (204)
.+++.+|.-+|||. |..++.-++.. ....++++|+++..++.|++--.. +++.. |..+. ..
T Consensus 183 v~~G~tvaV~GlGgVGlaaI~gA~~a-gA~~IiAvD~~~~Kl~~A~~fGAT-----------~~vn~~~~~~vv~~i~~~ 250 (366)
T COG1062 183 VEPGDTVAVFGLGGVGLAAIQGAKAA-GAGRIIAVDINPEKLELAKKFGAT-----------HFVNPKEVDDVVEAIVEL 250 (366)
T ss_pred CCCCCeEEEEeccHhHHHHHHHHHHc-CCceEEEEeCCHHHHHHHHhcCCc-----------eeecchhhhhHHHHHHHh
Confidence 68899999999996 77777777776 456999999999999999875433 22221 11110 01
Q ss_pred CCCCeeEEEECCCccchhHHHHHhcCCCcEEEEEecCCCCcc
Q psy10572 121 REAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPFKGQ 162 (204)
Q Consensus 121 ~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~~~~~~~~ 162 (204)
.....|.++-........++.+..+.++|..++.=......+
T Consensus 251 T~gG~d~~~e~~G~~~~~~~al~~~~~~G~~v~iGv~~~~~~ 292 (366)
T COG1062 251 TDGGADYAFECVGNVEVMRQALEATHRGGTSVIIGVAGAGQE 292 (366)
T ss_pred cCCCCCEEEEccCCHHHHHHHHHHHhcCCeEEEEecCCCCce
Confidence 123678888777777888999999999999988665554333
|
|
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.15 Score=41.56 Aligned_cols=93 Identities=18% Similarity=0.218 Sum_probs=57.8
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEE-ec--CCCCCCCCC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVV-WN--GKHGYEREA 123 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~d--~~~~~~~~~ 123 (204)
+.++.+||-.|+|. |.++..+++..+ +++++++.++.....+.+.+.. . .++. .+ ...... +
T Consensus 181 ~~~g~~VlV~G~G~vG~~avq~Ak~~G--a~vi~~~~~~~~~~~~~~~~Ga--------~--~vi~~~~~~~~~~~~--~ 246 (360)
T PLN02586 181 TEPGKHLGVAGLGGLGHVAVKIGKAFG--LKVTVISSSSNKEDEAINRLGA--------D--SFLVSTDPEKMKAAI--G 246 (360)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCcchhhhHHHhCCC--------c--EEEcCCCHHHHHhhc--C
Confidence 45788899899986 778888888764 4788888776543322221111 0 1111 00 000111 2
Q ss_pred CeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 124 PYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 124 ~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
.+|+|+-........+...+.|+++|.++..
T Consensus 247 ~~D~vid~~g~~~~~~~~~~~l~~~G~iv~v 277 (360)
T PLN02586 247 TMDYIIDTVSAVHALGPLLGLLKVNGKLITL 277 (360)
T ss_pred CCCEEEECCCCHHHHHHHHHHhcCCcEEEEe
Confidence 4899987766555678889999999999864
|
|
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.31 Score=39.39 Aligned_cols=97 Identities=19% Similarity=0.123 Sum_probs=62.1
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe---cCC---CCCC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW---NGK---HGYE 120 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---d~~---~~~~ 120 (204)
+.++.+|+-.|+|. |..+..+++..+ +++++++.++..++.+++.-... -+..... +.. ....
T Consensus 164 ~~~g~~VlV~G~G~vG~~a~~~a~~~G--~~vi~~~~~~~~~~~~~~~Ga~~--------~i~~~~~~~~~~~~~~~~~t 233 (349)
T TIGR03201 164 LKKGDLVIVIGAGGVGGYMVQTAKAMG--AAVVAIDIDPEKLEMMKGFGADL--------TLNPKDKSAREVKKLIKAFA 233 (349)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHHhCCce--------EecCccccHHHHHHHHHhhc
Confidence 57789999999976 778888888763 48999999999888876531110 0000010 110 0011
Q ss_pred CCCCee----EEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 121 REAPYD----IIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 121 ~~~~~D----~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
....+| +|+-..+.....+.+.+.|+++|++++.
T Consensus 234 ~~~g~d~~~d~v~d~~g~~~~~~~~~~~l~~~G~iv~~ 271 (349)
T TIGR03201 234 KARGLRSTGWKIFECSGSKPGQESALSLLSHGGTLVVV 271 (349)
T ss_pred ccCCCCCCcCEEEECCCChHHHHHHHHHHhcCCeEEEE
Confidence 112344 6776666666778889999999999764
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.61 Score=37.68 Aligned_cols=88 Identities=17% Similarity=-0.019 Sum_probs=41.5
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHh---------------CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccc--eEEE
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMA---------------GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGR--VQFV 111 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~---------------~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 111 (204)
....+|+|+||.+|.-+..+.... .+..+++--|+-..-....-+.+..........++ +.-+
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gv 94 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGV 94 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEE
T ss_pred CCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEec
Confidence 444699999999998776665431 12247777785443222222222211000000122 2234
Q ss_pred EecCCCCCCCCCCeeEEEECCCccc
Q psy10572 112 VWNGKHGYEREAPYDIIHVSPSYFT 136 (204)
Q Consensus 112 ~~d~~~~~~~~~~~D~v~~~~~~~~ 136 (204)
.+.+....+|.++.|++++...+||
T Consensus 95 pgSFy~rLfP~~Svh~~~Ss~alHW 119 (334)
T PF03492_consen 95 PGSFYGRLFPSNSVHFGHSSYALHW 119 (334)
T ss_dssp ES-TTS--S-TT-EEEEEEES-TTB
T ss_pred CchhhhccCCCCceEEEEEechhhh
Confidence 5666677788899999998766655
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length | Back alignment and domain information |
|---|
Probab=94.85 E-value=1.2 Score=33.48 Aligned_cols=115 Identities=17% Similarity=0.100 Sum_probs=70.2
Q ss_pred HHHHHHHhccCCCCCEEEEEcCCCcH----HHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe
Q psy10572 38 AQMLELLKDKIKPGARILDIGSGSGY----LTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW 113 (204)
Q Consensus 38 ~~~~~~l~~~~~~~~~vLdiG~G~G~----~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 113 (204)
++++..++. =.....++++.|+.|. +++..+.+- .+++++.|-.++..+...++.+...+ ..+.++|+.+
T Consensus 30 aEfISAlAA-G~nAkliVe~~s~g~~~~ttiaLaaAAr~-TgGR~vCIvp~~~~~~~~~~~l~~~~----~~~~vEfvvg 103 (218)
T PF07279_consen 30 AEFISALAA-GWNAKLIVEAWSSGGAISTTIALAAAARQ-TGGRHVCIVPDEQSLSEYKKALGEAG----LSDVVEFVVG 103 (218)
T ss_pred HHHHHHHhc-cccceEEEEEecCCCchHhHHHHHHHHHh-cCCeEEEEcCChhhHHHHHHHHhhcc----ccccceEEec
Confidence 345555552 2445688888666432 333333333 45799999888887766666665422 1244688888
Q ss_pred cCCC-CCCCCCCeeEEEECCCccchhHHHHHhcC--CCcEEEEEecCC
Q psy10572 114 NGKH-GYEREAPYDIIHVSPSYFTIPQKLLDQLV--PGGRMVMPVGEP 158 (204)
Q Consensus 114 d~~~-~~~~~~~~D~v~~~~~~~~~~~~~~~~Lk--~gG~l~~~~~~~ 158 (204)
+..+ ....-...|.++++.-..+...++++.++ |.|-+++.....
T Consensus 104 ~~~e~~~~~~~~iDF~vVDc~~~d~~~~vl~~~~~~~~GaVVV~~Na~ 151 (218)
T PF07279_consen 104 EAPEEVMPGLKGIDFVVVDCKREDFAARVLRAAKLSPRGAVVVCYNAF 151 (218)
T ss_pred CCHHHHHhhccCCCEEEEeCCchhHHHHHHHHhccCCCceEEEEeccc
Confidence 7442 22233569999998888777766666654 467776655443
|
The function of this family is unknown. |
| >PLN02827 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.091 Score=43.05 Aligned_cols=93 Identities=20% Similarity=0.166 Sum_probs=62.6
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe-----cCCC---C
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW-----NGKH---G 118 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-----d~~~---~ 118 (204)
+.++.+||-.|+|. |.++..+++..+ ...++++|.++...+.++..-. . .++.. +... .
T Consensus 191 ~~~g~~VlV~G~G~vG~~~iqlak~~G-~~~vi~~~~~~~~~~~a~~lGa---------~--~~i~~~~~~~~~~~~v~~ 258 (378)
T PLN02827 191 VSKGSSVVIFGLGTVGLSVAQGAKLRG-ASQIIGVDINPEKAEKAKTFGV---------T--DFINPNDLSEPIQQVIKR 258 (378)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHHHcCC---------c--EEEcccccchHHHHHHHH
Confidence 57889999999876 777777888763 2258899988888877754311 1 11111 1100 0
Q ss_pred CCCCCCeeEEEECCCccchhHHHHHhcCCC-cEEEE
Q psy10572 119 YEREAPYDIIHVSPSYFTIPQKLLDQLVPG-GRMVM 153 (204)
Q Consensus 119 ~~~~~~~D~v~~~~~~~~~~~~~~~~Lk~g-G~l~~ 153 (204)
... +.+|+|+-..+....+....+.++++ |++++
T Consensus 259 ~~~-~g~d~vid~~G~~~~~~~~l~~l~~g~G~iv~ 293 (378)
T PLN02827 259 MTG-GGADYSFECVGDTGIATTALQSCSDGWGLTVT 293 (378)
T ss_pred HhC-CCCCEEEECCCChHHHHHHHHhhccCCCEEEE
Confidence 111 26999998777666778889999998 99976
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.22 Score=33.27 Aligned_cols=89 Identities=17% Similarity=0.125 Sum_probs=58.8
Q ss_pred CCCcHHHHHHHHHhCCCc-eEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC----CCCCCeeEEEECCC
Q psy10572 59 SGSGYLTACLAYMAGPEG-RVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY----EREAPYDIIHVSPS 133 (204)
Q Consensus 59 ~G~G~~~~~l~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~v~~~~~ 133 (204)
||.|.++..+++.+.... .++.+|.++..++.++.. .+.++.+|..... ..-...+.+++...
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~------------~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~ 71 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE------------GVEVIYGDATDPEVLERAGIEKADAVVILTD 71 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT------------TSEEEES-TTSHHHHHHTTGGCESEEEEESS
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc------------ccccccccchhhhHHhhcCccccCEEEEccC
Confidence 566678877777664444 799999999998887653 3678899976432 12256888877665
Q ss_pred ccc---hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 134 YFT---IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 134 ~~~---~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
... ......+.+.|...+++...+..
T Consensus 72 ~d~~n~~~~~~~r~~~~~~~ii~~~~~~~ 100 (116)
T PF02254_consen 72 DDEENLLIALLARELNPDIRIIARVNDPE 100 (116)
T ss_dssp SHHHHHHHHHHHHHHTTTSEEEEEESSHH
T ss_pred CHHHHHHHHHHHHHHCCCCeEEEEECCHH
Confidence 543 22445566778888888665543
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.11 Score=40.05 Aligned_cols=47 Identities=26% Similarity=0.238 Sum_probs=37.3
Q ss_pred CCEEEEEcCCCcHHHHHHHHHhCC-------CceEEEEEcCHHHHHHHHHHhhh
Q psy10572 51 GARILDIGSGSGYLTACLAYMAGP-------EGRVYGVEHVMELAESSIKNIDK 97 (204)
Q Consensus 51 ~~~vLdiG~G~G~~~~~l~~~~~~-------~~~v~~vD~~~~~~~~a~~~~~~ 97 (204)
..+|+|+|+|+|.++..+++.+.. ..+++-||.|+.+.+.-++++..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 469999999999999999887632 25899999999999888888755
|
; PDB: 4F3N_A 1ZKD_B. |
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.23 Score=43.89 Aligned_cols=107 Identities=12% Similarity=0.015 Sum_probs=63.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHh------CC-----CceEEEEEcCHHHHHHHH--------------HHhhhcCcccc
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMA------GP-----EGRVYGVEHVMELAESSI--------------KNIDKGNSELL 103 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~------~~-----~~~v~~vD~~~~~~~~a~--------------~~~~~~~~~~~ 103 (204)
++.-+|+|+|-|+|.-.....+.. .+ .-+++++|..|-..+... +....+.....
T Consensus 56 ~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (662)
T PRK01747 56 RRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLP 135 (662)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCC
Confidence 445799999999999766665443 12 248999997653222221 21111110000
Q ss_pred C-------cc--ceEEEEecCCCCCCC-CCCeeEEEECCCcc---------chhHHHHHhcCCCcEEEEEe
Q psy10572 104 D-------QG--RVQFVVWNGKHGYER-EAPYDIIHVSPSYF---------TIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 104 ~-------~~--~~~~~~~d~~~~~~~-~~~~D~v~~~~~~~---------~~~~~~~~~Lk~gG~l~~~~ 155 (204)
+ .. .+++..+|+.+.... ...+|+|+.++-.+ +++..+.++++|||.+.--+
T Consensus 136 g~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t 206 (662)
T PRK01747 136 GCHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATFT 206 (662)
T ss_pred CceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEee
Confidence 0 11 344566776543221 14699999986443 36789999999999997543
|
|
| >cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.58 Score=38.78 Aligned_cols=106 Identities=14% Similarity=0.091 Sum_probs=65.3
Q ss_pred CCCCCEEEEEc-CCC-cHHHHHHHHHhCC-CceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe----cCCC---
Q psy10572 48 IKPGARILDIG-SGS-GYLTACLAYMAGP-EGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW----NGKH--- 117 (204)
Q Consensus 48 ~~~~~~vLdiG-~G~-G~~~~~l~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----d~~~--- 117 (204)
++++.+|+-+| +|. |.++..+++..+. ..+++++|.++..++.+++....... .......++.. +...
T Consensus 173 ~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~--~~Ga~~~~i~~~~~~~~~~~v~ 250 (410)
T cd08238 173 IKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAA--SRGIELLYVNPATIDDLHATLM 250 (410)
T ss_pred CCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhcccccc--ccCceEEEECCCccccHHHHHH
Confidence 56778999887 564 8888888887531 23799999999999988775221000 00001111211 1110
Q ss_pred CCCCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 118 GYEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 118 ~~~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
.......+|+++...+.........+.++++|.+++..
T Consensus 251 ~~t~g~g~D~vid~~g~~~~~~~a~~~l~~~G~~v~~~ 288 (410)
T cd08238 251 ELTGGQGFDDVFVFVPVPELVEEADTLLAPDGCLNFFA 288 (410)
T ss_pred HHhCCCCCCEEEEcCCCHHHHHHHHHHhccCCeEEEEE
Confidence 01122469999887666677788999999998776643
|
L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found |
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.047 Score=42.97 Aligned_cols=52 Identities=13% Similarity=0.091 Sum_probs=38.8
Q ss_pred cceEEEEecCCCC--CCCCCCeeEEEECCCcc----------------------chhHHHHHhcCCCcEEEEEecC
Q psy10572 106 GRVQFVVWNGKHG--YEREAPYDIIHVSPSYF----------------------TIPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 106 ~~~~~~~~d~~~~--~~~~~~~D~v~~~~~~~----------------------~~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
.+.+++++|..+. ..+.+++|+|++++++. .++..+.++|||||.+++.+..
T Consensus 7 ~~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~~ 82 (284)
T PRK11524 7 EAKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNST 82 (284)
T ss_pred CCCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCc
Confidence 4567888887753 24457899999998863 1457888999999999986543
|
|
| >cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.39 Score=37.16 Aligned_cols=93 Identities=25% Similarity=0.199 Sum_probs=61.8
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCce-EEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCe
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGR-VYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPY 125 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 125 (204)
+.++.+||-.|+|. |..+..+++..+ .+ +++++.++...+.+++.-.. ..+ .... ........+
T Consensus 95 ~~~g~~vlI~g~g~vg~~~i~~a~~~g--~~~vi~~~~~~~~~~~~~~~g~~--------~~~--~~~~--~~~~~~~~~ 160 (277)
T cd08255 95 PRLGERVAVVGLGLVGLLAAQLAKAAG--AREVVGVDPDAARRELAEALGPA--------DPV--AADT--ADEIGGRGA 160 (277)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CCcEEEECCCHHHHHHHHHcCCC--------ccc--cccc--hhhhcCCCC
Confidence 57788999888875 667777777753 35 99999888887766653201 011 0000 011123469
Q ss_pred eEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 126 DIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 126 D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
|+++.............+.|+++|.++..
T Consensus 161 d~vl~~~~~~~~~~~~~~~l~~~g~~~~~ 189 (277)
T cd08255 161 DVVIEASGSPSALETALRLLRDRGRVVLV 189 (277)
T ss_pred CEEEEccCChHHHHHHHHHhcCCcEEEEE
Confidence 99987656556778889999999999764
|
This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD |
| >cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.18 Score=41.00 Aligned_cols=97 Identities=18% Similarity=0.146 Sum_probs=62.2
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccce-EEEEec--C---CCCCC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRV-QFVVWN--G---KHGYE 120 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~d--~---~~~~~ 120 (204)
+.++.+||-.|+|. |..+..+++..+ ..++++++.++...+.++..-.. .+ .....+ . .....
T Consensus 182 ~~~g~~vlV~G~g~vG~~~~~~a~~~G-~~~Vi~~~~~~~~~~~~~~~ga~---------~~i~~~~~~~~~~~~~~~~~ 251 (365)
T cd08277 182 VEPGSTVAVFGLGAVGLSAIMGAKIAG-ASRIIGVDINEDKFEKAKEFGAT---------DFINPKDSDKPVSEVIREMT 251 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHcCCC---------cEeccccccchHHHHHHHHh
Confidence 57888999998875 777777788763 22799999998888877542111 11 000000 0 00111
Q ss_pred CCCCeeEEEECCCccchhHHHHHhcCCC-cEEEEEe
Q psy10572 121 REAPYDIIHVSPSYFTIPQKLLDQLVPG-GRMVMPV 155 (204)
Q Consensus 121 ~~~~~D~v~~~~~~~~~~~~~~~~Lk~g-G~l~~~~ 155 (204)
. ..+|+|+-..........+.+.++++ |.++..-
T Consensus 252 ~-~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g 286 (365)
T cd08277 252 G-GGVDYSFECTGNADLMNEALESTKLGWGVSVVVG 286 (365)
T ss_pred C-CCCCEEEECCCChHHHHHHHHhcccCCCEEEEEc
Confidence 2 46999997766566778889999885 8887643
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i |
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.41 Score=39.70 Aligned_cols=89 Identities=15% Similarity=0.038 Sum_probs=59.8
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 49 KPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 49 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
..+++|+-+|+|. |......++.+ +++|+++|.++.....+... ...+... .+. . ...|+
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~--Ga~ViV~d~dp~r~~~A~~~------------G~~v~~l--eea-l--~~aDV 253 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGM--GARVIVTEVDPIRALEAAMD------------GFRVMTM--EEA-A--KIGDI 253 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhC--cCEEEEEeCChhhHHHHHhc------------CCEeCCH--HHH-H--hcCCE
Confidence 5788999999997 77777777765 35899999998754444321 1222111 111 1 34799
Q ss_pred EEECCCccchhH-HHHHhcCCCcEEEEEec
Q psy10572 128 IHVSPSYFTIPQ-KLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 128 v~~~~~~~~~~~-~~~~~Lk~gG~l~~~~~ 156 (204)
|+...+..+++. .....+|+|++++..-.
T Consensus 254 VItaTG~~~vI~~~~~~~mK~GailiN~G~ 283 (406)
T TIGR00936 254 FITATGNKDVIRGEHFENMKDGAIVANIGH 283 (406)
T ss_pred EEECCCCHHHHHHHHHhcCCCCcEEEEECC
Confidence 988877777664 58889999998876443
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >KOG2078|consensus | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.039 Score=45.25 Aligned_cols=63 Identities=24% Similarity=0.269 Sum_probs=52.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCC
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGK 116 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~ 116 (204)
.+++..|.|+.||.|-+++.+++. .|.|++.|.++.+++..+.++..+. +...++++...|+.
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK---~crV~aNDLNpesik~Lk~ni~lNk---v~~~~iei~Nmda~ 309 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKK---GCRVYANDLNPESIKWLKANIKLNK---VDPSAIEIFNMDAK 309 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhc---CcEEEecCCCHHHHHHHHHhccccc---cchhheeeecccHH
Confidence 589999999999999999998885 4799999999999999999988765 23345777766654
|
|
| >TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.7 Score=38.15 Aligned_cols=96 Identities=17% Similarity=0.118 Sum_probs=62.4
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe---cCCC---CCC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW---NGKH---GYE 120 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---d~~~---~~~ 120 (204)
+.++.+||-.|+|. |..+..+++..+ ...++.+|.++..++.+++.- .. .+... +... ...
T Consensus 183 ~~~g~~VlV~G~G~iG~~aiqlAk~~G-a~~vi~~d~~~~r~~~a~~~G---------a~--~v~~~~~~~~~~~v~~~~ 250 (393)
T TIGR02819 183 VGPGSTVYIAGAGPVGLAAAASAQLLG-AAVVIVGDLNPARLAQARSFG---------CE--TVDLSKDATLPEQIEQIL 250 (393)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHHHHHcC---------Ce--EEecCCcccHHHHHHHHc
Confidence 57788888888876 777777887763 224666788888888886631 11 11111 1110 011
Q ss_pred CCCCeeEEEECCCcc--------------chhHHHHHhcCCCcEEEEEe
Q psy10572 121 REAPYDIIHVSPSYF--------------TIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 121 ~~~~~D~v~~~~~~~--------------~~~~~~~~~Lk~gG~l~~~~ 155 (204)
....+|+++-..+.. ..++.+.+.++++|.+++.=
T Consensus 251 ~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G 299 (393)
T TIGR02819 251 GEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPG 299 (393)
T ss_pred CCCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEee
Confidence 224589998877654 36788999999999998743
|
Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent. |
| >cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.22 Score=40.18 Aligned_cols=95 Identities=20% Similarity=0.226 Sum_probs=62.8
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe---cCCC---CCC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW---NGKH---GYE 120 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---d~~~---~~~ 120 (204)
++++.+||-.|+|. |..+..+++..+ ...+++++.++...+.++..-. . .++.. +... ...
T Consensus 164 ~~~g~~vlI~g~g~iG~~~~~lak~~G-~~~v~~~~~~~~~~~~~~~~g~---------~--~~v~~~~~~~~~~i~~~~ 231 (351)
T cd08285 164 IKLGDTVAVFGIGPVGLMAVAGARLRG-AGRIIAVGSRPNRVELAKEYGA---------T--DIVDYKNGDVVEQILKLT 231 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHcCC---------c--eEecCCCCCHHHHHHHHh
Confidence 57788999888875 777777787763 2368999988887777764211 1 11111 1100 112
Q ss_pred CCCCeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 121 REAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 121 ~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
....+|+++...........+.+.|+++|+++..
T Consensus 232 ~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~ 265 (351)
T cd08285 232 GGKGVDAVIIAGGGQDTFEQALKVLKPGGTISNV 265 (351)
T ss_pred CCCCCcEEEECCCCHHHHHHHHHHhhcCCEEEEe
Confidence 2346999987766556778999999999998753
|
This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.29 Score=39.59 Aligned_cols=96 Identities=17% Similarity=0.125 Sum_probs=62.0
Q ss_pred CCCCCEEEEEcC-C-CcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe-cCCC---CCCC
Q psy10572 48 IKPGARILDIGS-G-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW-NGKH---GYER 121 (204)
Q Consensus 48 ~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-d~~~---~~~~ 121 (204)
+.++.+||-.|+ | .|.++..+++..+ +++++++.++...+.+++.+... .-+..... +... ....
T Consensus 156 ~~~g~~VlV~GaaG~vG~~aiqlAk~~G--~~Vi~~~~~~~k~~~~~~~lGa~-------~vi~~~~~~~~~~~i~~~~~ 226 (348)
T PLN03154 156 PKKGDSVFVSAASGAVGQLVGQLAKLHG--CYVVGSAGSSQKVDLLKNKLGFD-------EAFNYKEEPDLDAALKRYFP 226 (348)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHHhcCCC-------EEEECCCcccHHHHHHHHCC
Confidence 578899999998 4 4888888888764 58999998888777765332110 00111001 1110 1112
Q ss_pred CCCeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 122 EAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 122 ~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
..+|+++-.... .......+.|+++|++++.
T Consensus 227 -~gvD~v~d~vG~-~~~~~~~~~l~~~G~iv~~ 257 (348)
T PLN03154 227 -EGIDIYFDNVGG-DMLDAALLNMKIHGRIAVC 257 (348)
T ss_pred -CCcEEEEECCCH-HHHHHHHHHhccCCEEEEE
Confidence 369999876554 4678889999999998864
|
|
| >PLN02514 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.37 Score=39.08 Aligned_cols=95 Identities=18% Similarity=0.199 Sum_probs=58.3
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 49 KPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 49 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
.++.+|+-.|+|. |.++..+++..+ +++++++.++.....+.+.+.. .. .+...+..........+|+
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~G--~~vi~~~~~~~~~~~~~~~~Ga--------~~-~i~~~~~~~~~~~~~~~D~ 247 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAMG--HHVTVISSSDKKREEALEHLGA--------DD-YLVSSDAAEMQEAADSLDY 247 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHhcCC--------cE-EecCCChHHHHHhcCCCcE
Confidence 5778888888875 777777888753 4788888777655544332211 10 0111110000000125899
Q ss_pred EEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 128 IHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 128 v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
++-..+.......+.+.|+++|+++..
T Consensus 248 vid~~g~~~~~~~~~~~l~~~G~iv~~ 274 (357)
T PLN02514 248 IIDTVPVFHPLEPYLSLLKLDGKLILM 274 (357)
T ss_pred EEECCCchHHHHHHHHHhccCCEEEEE
Confidence 987766556778889999999998774
|
|
| >KOG1098|consensus | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.054 Score=46.48 Aligned_cols=40 Identities=15% Similarity=0.119 Sum_probs=35.4
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHH
Q psy10572 47 KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVME 86 (204)
Q Consensus 47 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~ 86 (204)
++.++..|||+||.+|.+....++.++.++.|+|+|+.|-
T Consensus 41 fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pi 80 (780)
T KOG1098|consen 41 FLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPI 80 (780)
T ss_pred cccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeec
Confidence 4688999999999999999999999977789999998663
|
|
| >TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.23 Score=40.48 Aligned_cols=98 Identities=15% Similarity=0.054 Sum_probs=63.8
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEE--ecCCC---CCCC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVV--WNGKH---GYER 121 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~d~~~---~~~~ 121 (204)
++++.+||-.|+|. |.++..+++..+ ..+++++|.++...+.+++.-... -+.... .+... ....
T Consensus 183 ~~~g~~VlV~G~G~iG~~a~q~Ak~~G-~~~Vi~~~~~~~~~~~a~~~Ga~~--------~i~~~~~~~~~~~~v~~~~~ 253 (368)
T TIGR02818 183 VEEGDTVAVFGLGGIGLSVIQGARMAK-ASRIIAIDINPAKFELAKKLGATD--------CVNPNDYDKPIQEVIVEITD 253 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHHhCCCe--------EEcccccchhHHHHHHHHhC
Confidence 57888999999886 777788888763 227999999999888886532110 010000 00000 0111
Q ss_pred CCCeeEEEECCCccchhHHHHHhcCCC-cEEEEEe
Q psy10572 122 EAPYDIIHVSPSYFTIPQKLLDQLVPG-GRMVMPV 155 (204)
Q Consensus 122 ~~~~D~v~~~~~~~~~~~~~~~~Lk~g-G~l~~~~ 155 (204)
+.+|+++-............+.++++ |++++.-
T Consensus 254 -~g~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~g 287 (368)
T TIGR02818 254 -GGVDYSFECIGNVNVMRAALECCHKGWGESIIIG 287 (368)
T ss_pred -CCCCEEEECCCCHHHHHHHHHHhhcCCCeEEEEe
Confidence 35899988777666778888999886 9887643
|
The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols. |
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.82 Score=37.61 Aligned_cols=86 Identities=14% Similarity=-0.015 Sum_probs=43.2
Q ss_pred CCEEEEEcCCCcHHHHHHHHH--------h------CCCceEEEEEcCHHHHHHHHHHhhhcCc-----cc----cCccc
Q psy10572 51 GARILDIGSGSGYLTACLAYM--------A------GPEGRVYGVEHVMELAESSIKNIDKGNS-----EL----LDQGR 107 (204)
Q Consensus 51 ~~~vLdiG~G~G~~~~~l~~~--------~------~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~----~~~~~ 107 (204)
...|+|+|||+|..+..+... . .|..+++.-|+-..-....-+.+..... +. .....
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 568999999999776554332 1 1245666667443322222122211000 00 00011
Q ss_pred --eEEEEecCCCCCCCCCCeeEEEECCCccc
Q psy10572 108 --VQFVVWNGKHGYEREAPYDIIHVSPSYFT 136 (204)
Q Consensus 108 --~~~~~~d~~~~~~~~~~~D~v~~~~~~~~ 136 (204)
+.-+.+.+....+|.++.+++++...++|
T Consensus 144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHW 174 (386)
T PLN02668 144 YFAAGVPGSFYRRLFPARSIDVFHSAFSLHW 174 (386)
T ss_pred eEEEecCccccccccCCCceEEEEeecccee
Confidence 11122444456677788888887766654
|
|
| >cd08300 alcohol_DH_class_III class III alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=93.87 E-value=1.5 Score=35.73 Aligned_cols=94 Identities=19% Similarity=0.179 Sum_probs=62.5
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe-----cCCC---C
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW-----NGKH---G 118 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-----d~~~---~ 118 (204)
++++.+||-.|+|. |.++..+++..+ ...++++|.++...+.+++.- . . .++.. +... .
T Consensus 184 ~~~g~~VlV~G~G~vG~~a~~~ak~~G-~~~vi~~~~~~~~~~~~~~lG-a--------~--~~i~~~~~~~~~~~~v~~ 251 (368)
T cd08300 184 VEPGSTVAVFGLGAVGLAVIQGAKAAG-ASRIIGIDINPDKFELAKKFG-A--------T--DCVNPKDHDKPIQQVLVE 251 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHcC-C--------C--EEEcccccchHHHHHHHH
Confidence 57889999999875 777777788763 226999999999888775421 1 1 11111 0100 0
Q ss_pred CCCCCCeeEEEECCCccchhHHHHHhcCCC-cEEEEE
Q psy10572 119 YEREAPYDIIHVSPSYFTIPQKLLDQLVPG-GRMVMP 154 (204)
Q Consensus 119 ~~~~~~~D~v~~~~~~~~~~~~~~~~Lk~g-G~l~~~ 154 (204)
... +.+|+|+-..........+.+.|+++ |+++..
T Consensus 252 ~~~-~g~d~vid~~g~~~~~~~a~~~l~~~~G~~v~~ 287 (368)
T cd08300 252 MTD-GGVDYTFECIGNVKVMRAALEACHKGWGTSVII 287 (368)
T ss_pred HhC-CCCcEEEECCCChHHHHHHHHhhccCCCeEEEE
Confidence 111 36999988766556778889999987 888764
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim |
| >KOG2360|consensus | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.24 Score=40.25 Aligned_cols=95 Identities=23% Similarity=0.249 Sum_probs=66.5
Q ss_pred ChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEE
Q psy10572 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVV 112 (204)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 112 (204)
...........+. ..++..|+|.+|-+|.-+..++....+.++++|+|.+....+..++.+...+ ...+....
T Consensus 198 qd~asclpA~ll~--p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag-----~~~~~~~~ 270 (413)
T KOG2360|consen 198 QDKASCLPAHLLD--PRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAG-----VSIVESVE 270 (413)
T ss_pred echhhcchhhhcC--CCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcC-----CCcccccc
Confidence 3333334444454 5677899999999999999998887667899999999999888888776633 45666778
Q ss_pred ecCCCCCCCC--CCeeEEEECCCc
Q psy10572 113 WNGKHGYERE--APYDIIHVSPSY 134 (204)
Q Consensus 113 ~d~~~~~~~~--~~~D~v~~~~~~ 134 (204)
+|+.....+. ...-.+++++++
T Consensus 271 ~df~~t~~~~~~~~v~~iL~Dpsc 294 (413)
T KOG2360|consen 271 GDFLNTATPEKFRDVTYILVDPSC 294 (413)
T ss_pred ccccCCCCcccccceeEEEeCCCC
Confidence 8866532111 335556666554
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.08 Score=44.43 Aligned_cols=87 Identities=18% Similarity=0.226 Sum_probs=52.8
Q ss_pred CEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHH----HHHHHHHHhhhcCccccCccceEEEEecCCCCC-CCCCCee
Q psy10572 52 ARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVME----LAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-EREAPYD 126 (204)
Q Consensus 52 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D 126 (204)
..|+|+.+|.|.++..|... .|..+.+.+. .+...-. ...-=+..|+.+.. .-..+||
T Consensus 367 RNVMDMnAg~GGFAAAL~~~-----~VWVMNVVP~~~~ntL~vIyd------------RGLIG~yhDWCE~fsTYPRTYD 429 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDD-----PVWVMNVVPVSGPNTLPVIYD------------RGLIGVYHDWCEAFSTYPRTYD 429 (506)
T ss_pred eeeeeecccccHHHHHhccC-----CceEEEecccCCCCcchhhhh------------cccchhccchhhccCCCCcchh
Confidence 48999999999999988764 2444433332 1111111 11111223333322 1137899
Q ss_pred EEEECCCccc---------hhHHHHHhcCCCcEEEEEe
Q psy10572 127 IIHVSPSYFT---------IPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 127 ~v~~~~~~~~---------~~~~~~~~Lk~gG~l~~~~ 155 (204)
+|.++..+.. ++-++-+.|+|+|.+++.-
T Consensus 430 LlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD 467 (506)
T PF03141_consen 430 LLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRD 467 (506)
T ss_pred heehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEec
Confidence 9988876643 4567779999999999843
|
; GO: 0008168 methyltransferase activity |
| >cd05278 FDH_like Formaldehyde dehydrogenases | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.4 Score=38.39 Aligned_cols=98 Identities=17% Similarity=0.188 Sum_probs=59.3
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCC---CCCCCCC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGK---HGYEREA 123 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~---~~~~~~~ 123 (204)
+.++.+||..|+|. |..+..+++..+ ...+++++.++...+.++..-.. .-+.....+.. ....+..
T Consensus 165 ~~~~~~VlI~g~g~vg~~~iqlak~~g-~~~v~~~~~~~~~~~~~~~~g~~--------~vi~~~~~~~~~~i~~~~~~~ 235 (347)
T cd05278 165 IKPGSTVAVIGAGPVGLCAVAGARLLG-AARIIAVDSNPERLDLAKEAGAT--------DIINPKNGDIVEQILELTGGR 235 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHhCCc--------EEEcCCcchHHHHHHHHcCCC
Confidence 56788888877653 666777777653 23788888777776666543110 00111111110 0112235
Q ss_pred CeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 124 PYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 124 ~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
.+|+++.............+.|+++|+++..
T Consensus 236 ~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 236 GVDCVIEAVGFEETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred CCcEEEEccCCHHHHHHHHHHhhcCCEEEEE
Confidence 6999987655445778889999999998754
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall |
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.45 Score=40.07 Aligned_cols=89 Identities=17% Similarity=0.043 Sum_probs=60.8
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 49 KPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 49 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
-.+++|+-+|+|. |......++.++ ++|+++|.++.....+... ...+. +..+ .. ...|+
T Consensus 252 LaGKtVvViGyG~IGr~vA~~aka~G--a~VIV~e~dp~r~~eA~~~------------G~~vv--~leE-al--~~ADV 312 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMKAAG--ARVIVTEIDPICALQALME------------GYQVL--TLED-VV--SEADI 312 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCchhhHHHHhc------------CCeec--cHHH-HH--hhCCE
Confidence 5688999999997 776666666553 5899999988654444321 11121 1111 11 34799
Q ss_pred EEECCCccch-hHHHHHhcCCCcEEEEEec
Q psy10572 128 IHVSPSYFTI-PQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 128 v~~~~~~~~~-~~~~~~~Lk~gG~l~~~~~ 156 (204)
|+......++ .......+|+|++++-.-.
T Consensus 313 VI~tTGt~~vI~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 313 FVTTTGNKDIIMVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred EEECCCCccchHHHHHhcCCCCCEEEEcCC
Confidence 9998777776 4889999999999987544
|
|
| >cd08232 idonate-5-DH L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.39 Score=38.41 Aligned_cols=93 Identities=18% Similarity=0.192 Sum_probs=59.3
Q ss_pred CCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEec---CCCCCCCCCCe
Q psy10572 50 PGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWN---GKHGYEREAPY 125 (204)
Q Consensus 50 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d---~~~~~~~~~~~ 125 (204)
++.+||..|+|. |..+..+++..+ ...+++++.++...+.+++.-. . .++..+ ..........+
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G-~~~v~~~~~s~~~~~~~~~~g~---------~--~vi~~~~~~~~~~~~~~~~v 232 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAG-AAEIVATDLADAPLAVARAMGA---------D--ETVNLARDPLAAYAADKGDF 232 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHHcCC---------C--EEEcCCchhhhhhhccCCCc
Confidence 778898888775 667777777653 1268999988887776544211 0 111110 11111122459
Q ss_pred eEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 126 DIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 126 D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
|+++.........+.+.+.|+++|+++..
T Consensus 233 d~vld~~g~~~~~~~~~~~L~~~G~~v~~ 261 (339)
T cd08232 233 DVVFEASGAPAALASALRVVRPGGTVVQV 261 (339)
T ss_pred cEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence 99998766555678889999999999864
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai |
| >cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.34 Score=38.77 Aligned_cols=95 Identities=18% Similarity=0.191 Sum_probs=61.3
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe---cCCCCCCCCC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW---NGKHGYEREA 123 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---d~~~~~~~~~ 123 (204)
+.++.+||-.|+|. |..+..+++..+ .+++.++.++...+.+++.- . . .++.. +.........
T Consensus 161 ~~~~~~vlV~g~g~iG~~~~~~a~~~G--~~vi~~~~~~~~~~~~~~~g-~--------~--~~i~~~~~~~~~~~~~~~ 227 (333)
T cd08296 161 AKPGDLVAVQGIGGLGHLAVQYAAKMG--FRTVAISRGSDKADLARKLG-A--------H--HYIDTSKEDVAEALQELG 227 (333)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCC--CeEEEEeCChHHHHHHHHcC-C--------c--EEecCCCccHHHHHHhcC
Confidence 57788999999775 777777777753 47999998888777775421 1 0 11111 1100000113
Q ss_pred CeeEEEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 124 PYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 124 ~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
.+|+++...+.........+.|+++|.++..-
T Consensus 228 ~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g 259 (333)
T cd08296 228 GAKLILATAPNAKAISALVGGLAPRGKLLILG 259 (333)
T ss_pred CCCEEEECCCchHHHHHHHHHcccCCEEEEEe
Confidence 48999876544567788899999999988643
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal |
| >cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.91 Score=35.92 Aligned_cols=90 Identities=20% Similarity=0.245 Sum_probs=59.9
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCee
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYD 126 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D 126 (204)
+.++.+||-.|+|. |..+..+++..+ .++++++.++...+.+++ +.. ..+... .. ......+|
T Consensus 153 ~~~g~~vlV~g~g~vg~~~~q~a~~~G--~~vi~~~~~~~~~~~~~~-~g~--------~~~~~~----~~-~~~~~~~d 216 (319)
T cd08242 153 ITPGDKVAVLGDGKLGLLIAQVLALTG--PDVVLVGRHSEKLALARR-LGV--------ETVLPD----EA-ESEGGGFD 216 (319)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHH-cCC--------cEEeCc----cc-cccCCCCC
Confidence 56788999888764 555666666653 478999988888887765 211 111101 01 12335699
Q ss_pred EEEECCCccchhHHHHHhcCCCcEEEE
Q psy10572 127 IIHVSPSYFTIPQKLLDQLVPGGRMVM 153 (204)
Q Consensus 127 ~v~~~~~~~~~~~~~~~~Lk~gG~l~~ 153 (204)
+++...+.......+.+.|+++|.++.
T Consensus 217 ~vid~~g~~~~~~~~~~~l~~~g~~v~ 243 (319)
T cd08242 217 VVVEATGSPSGLELALRLVRPRGTVVL 243 (319)
T ss_pred EEEECCCChHHHHHHHHHhhcCCEEEE
Confidence 998876555567888899999999987
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta |
| >PLN02178 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.44 Score=39.03 Aligned_cols=91 Identities=21% Similarity=0.164 Sum_probs=58.0
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHH-HHHHHHHhhhcCccccCccceEEEE-ec--CCCCCCCCC
Q psy10572 49 KPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMEL-AESSIKNIDKGNSELLDQGRVQFVV-WN--GKHGYEREA 123 (204)
Q Consensus 49 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~-~d--~~~~~~~~~ 123 (204)
.++.+|+-.|+|. |..+..+++..+ +++++++.++.. .+.++.. . .. .++. .+ ...... .
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~G--a~Vi~~~~~~~~~~~~a~~l-G--------a~--~~i~~~~~~~v~~~~--~ 241 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAFG--LRVTVISRSSEKEREAIDRL-G--------AD--SFLVTTDSQKMKEAV--G 241 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHcC--CeEEEEeCChHHhHHHHHhC-C--------Cc--EEEcCcCHHHHHHhh--C
Confidence 4788999899886 777788888764 478898876543 4444321 1 11 1111 00 000011 2
Q ss_pred CeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 124 PYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 124 ~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
.+|+++-..........+.+.++++|.++..
T Consensus 242 ~~D~vid~~G~~~~~~~~~~~l~~~G~iv~v 272 (375)
T PLN02178 242 TMDFIIDTVSAEHALLPLFSLLKVSGKLVAL 272 (375)
T ss_pred CCcEEEECCCcHHHHHHHHHhhcCCCEEEEE
Confidence 4899988766666778889999999999864
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.48 Score=37.58 Aligned_cols=88 Identities=14% Similarity=0.095 Sum_probs=55.4
Q ss_pred CCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEE
Q psy10572 50 PGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDII 128 (204)
Q Consensus 50 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 128 (204)
.+.+++-+|+|. |......++.. +++++.+|.++...+.++.. ..++...+-..... ..+|+|
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~--Ga~V~v~~r~~~~~~~~~~~------------G~~~~~~~~l~~~l--~~aDiV 214 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKAL--GANVTVGARKSAHLARITEM------------GLSPFHLSELAEEV--GKIDII 214 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHc------------CCeeecHHHHHHHh--CCCCEE
Confidence 578999999986 55555555554 35999999998765554321 11222111011111 358999
Q ss_pred EECCCccchhHHHHHhcCCCcEEEE
Q psy10572 129 HVSPSYFTIPQKLLDQLVPGGRMVM 153 (204)
Q Consensus 129 ~~~~~~~~~~~~~~~~Lk~gG~l~~ 153 (204)
+...+..-+.+.....+++++.++-
T Consensus 215 I~t~p~~~i~~~~l~~~~~g~vIID 239 (296)
T PRK08306 215 FNTIPALVLTKEVLSKMPPEALIID 239 (296)
T ss_pred EECCChhhhhHHHHHcCCCCcEEEE
Confidence 9876655556778888999877663
|
|
| >KOG0023|consensus | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.26 Score=39.20 Aligned_cols=99 Identities=18% Similarity=0.116 Sum_probs=62.9
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEE--EecCCCCCC--CC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV--VWNGKHGYE--RE 122 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~d~~~~~~--~~ 122 (204)
+.|+.+|--+|.|- |.++..+++..+ .+|+++|.+..--+.+-+.+.+ +.+-.. ..|..+... -+
T Consensus 179 ~~pG~~vgI~GlGGLGh~aVq~AKAMG--~rV~vis~~~~kkeea~~~LGA--------d~fv~~~~d~d~~~~~~~~~d 248 (360)
T KOG0023|consen 179 LGPGKWVGIVGLGGLGHMAVQYAKAMG--MRVTVISTSSKKKEEAIKSLGA--------DVFVDSTEDPDIMKAIMKTTD 248 (360)
T ss_pred CCCCcEEEEecCcccchHHHHHHHHhC--cEEEEEeCCchhHHHHHHhcCc--------ceeEEecCCHHHHHHHHHhhc
Confidence 46888888888875 999999999875 5999999888666666655433 211111 111111111 11
Q ss_pred CCeeEEEECCCccchhHHHHHhcCCCcEEEEEecCC
Q psy10572 123 APYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 123 ~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
.-.|.+... ..+.++.+..+||++|.+++.-...
T Consensus 249 g~~~~v~~~--a~~~~~~~~~~lk~~Gt~V~vg~p~ 282 (360)
T KOG0023|consen 249 GGIDTVSNL--AEHALEPLLGLLKVNGTLVLVGLPE 282 (360)
T ss_pred Ccceeeeec--cccchHHHHHHhhcCCEEEEEeCcC
Confidence 223333322 5667789999999999998854433
|
|
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.48 E-value=0.41 Score=39.89 Aligned_cols=88 Identities=15% Similarity=0.045 Sum_probs=58.6
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 49 KPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 49 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
-.+.+|+-+|+|. |......++..+ ++|+.+|.++.....+... ...+. +..+ .. ...|+
T Consensus 210 l~Gk~VlViG~G~IG~~vA~~lr~~G--a~ViV~d~dp~ra~~A~~~------------G~~v~--~l~e-al--~~aDV 270 (425)
T PRK05476 210 IAGKVVVVAGYGDVGKGCAQRLRGLG--ARVIVTEVDPICALQAAMD------------GFRVM--TMEE-AA--ELGDI 270 (425)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCC--CEEEEEcCCchhhHHHHhc------------CCEec--CHHH-HH--hCCCE
Confidence 4788999999997 666666666553 5899999998765444321 11221 1111 11 25899
Q ss_pred EEECCCccchhH-HHHHhcCCCcEEEEEe
Q psy10572 128 IHVSPSYFTIPQ-KLLDQLVPGGRMVMPV 155 (204)
Q Consensus 128 v~~~~~~~~~~~-~~~~~Lk~gG~l~~~~ 155 (204)
|+...+..+.+. .....+|+|++++..-
T Consensus 271 VI~aTG~~~vI~~~~~~~mK~GailiNvG 299 (425)
T PRK05476 271 FVTATGNKDVITAEHMEAMKDGAILANIG 299 (425)
T ss_pred EEECCCCHHHHHHHHHhcCCCCCEEEEcC
Confidence 998877766664 7888999999887643
|
|
| >KOG0022|consensus | Back alignment and domain information |
|---|
Probab=93.46 E-value=1.4 Score=35.20 Aligned_cols=96 Identities=20% Similarity=0.180 Sum_probs=69.3
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe-cCCC----CC--
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW-NGKH----GY-- 119 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-d~~~----~~-- 119 (204)
+.++.++.-+|+|. |.....-++.. ..++++|+|+++.-.+.|++--..+ ++.. |... ..
T Consensus 190 v~~GstvAVfGLG~VGLav~~Gaka~-GAsrIIgvDiN~~Kf~~ak~fGaTe-----------~iNp~d~~~~i~evi~E 257 (375)
T KOG0022|consen 190 VEPGSTVAVFGLGGVGLAVAMGAKAA-GASRIIGVDINPDKFEKAKEFGATE-----------FINPKDLKKPIQEVIIE 257 (375)
T ss_pred cCCCCEEEEEecchHHHHHHHhHHhc-CcccEEEEecCHHHHHHHHhcCcce-----------ecChhhccccHHHHHHH
Confidence 68899999999997 77777777776 4569999999999999998754331 2111 1111 00
Q ss_pred CCCCCeeEEEECCCccchhHHHHHhcCCC-cEEEEEe
Q psy10572 120 EREAPYDIIHVSPSYFTIPQKLLDQLVPG-GRMVMPV 155 (204)
Q Consensus 120 ~~~~~~D~v~~~~~~~~~~~~~~~~Lk~g-G~l~~~~ 155 (204)
..++.+|.-+-..+..+...++....++| |.-++.=
T Consensus 258 mTdgGvDysfEc~G~~~~m~~al~s~h~GwG~sv~iG 294 (375)
T KOG0022|consen 258 MTDGGVDYSFECIGNVSTMRAALESCHKGWGKSVVIG 294 (375)
T ss_pred HhcCCceEEEEecCCHHHHHHHHHHhhcCCCeEEEEE
Confidence 12367898888888888888888888888 7776643
|
|
| >PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures [] | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.87 Score=35.38 Aligned_cols=41 Identities=17% Similarity=0.344 Sum_probs=33.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhC----CCceEEEEEcCHHHH
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAG----PEGRVYGVEHVMELA 88 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~----~~~~v~~vD~~~~~~ 88 (204)
+.++..++|+|||.|.++.+++.... +...++.||......
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~ 60 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH 60 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc
Confidence 57788999999999999999999873 235889999866544
|
The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing |
| >cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins | Back alignment and domain information |
|---|
Probab=93.33 E-value=0.85 Score=36.26 Aligned_cols=95 Identities=22% Similarity=0.201 Sum_probs=61.0
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccce-EEEEecCCCCCCCCCCe
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRV-QFVVWNGKHGYEREAPY 125 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~ 125 (204)
+.++.+||-.|+|. |..+..+++..+ .++++++.++...+.++..- . ..+ .....+.... ..+.+
T Consensus 160 ~~~~~~vlI~g~g~iG~~~~~~a~~~G--~~v~~~~~~~~~~~~~~~~g-~--------~~~~~~~~~~~~~~--~~~~~ 226 (330)
T cd08245 160 PRPGERVAVLGIGGLGHLAVQYARAMG--FETVAITRSPDKRELARKLG-A--------DEVVDSGAELDEQA--AAGGA 226 (330)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHhC-C--------cEEeccCCcchHHh--ccCCC
Confidence 57778999998874 666677777653 58999998888777764321 1 000 0000000001 12469
Q ss_pred eEEEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 126 DIIHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 126 D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
|+++...........+.+.|+++|.++...
T Consensus 227 d~vi~~~~~~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 227 DVILVTVVSGAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred CEEEECCCcHHHHHHHHHhcccCCEEEEEC
Confidence 999876555567788899999999998754
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an |
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=93.23 E-value=2.5 Score=33.60 Aligned_cols=95 Identities=16% Similarity=0.145 Sum_probs=60.7
Q ss_pred CCCCCEEEEEcC-C-CcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccce-EEEEe-cCCCC--CCC
Q psy10572 48 IKPGARILDIGS-G-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRV-QFVVW-NGKHG--YER 121 (204)
Q Consensus 48 ~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~-d~~~~--~~~ 121 (204)
+.++.+||-.|. | .|..+..+++..+ +++++++.++...+.++..- . ..+ ..... +.... ...
T Consensus 136 ~~~g~~VLI~ga~g~vG~~aiqlAk~~G--~~Vi~~~~s~~~~~~~~~lG-a--------~~vi~~~~~~~~~~~~~~~~ 204 (325)
T TIGR02825 136 VKGGETVMVNAAAGAVGSVVGQIAKLKG--CKVVGAAGSDEKVAYLKKLG-F--------DVAFNYKTVKSLEETLKKAS 204 (325)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHcC-C--------CEEEeccccccHHHHHHHhC
Confidence 578889998884 4 4778888888753 58999998888777775421 1 111 00010 11100 011
Q ss_pred CCCeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 122 EAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 122 ~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
...+|+++-..+. .......+.|+++|+++..
T Consensus 205 ~~gvdvv~d~~G~-~~~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 205 PDGYDCYFDNVGG-EFSNTVIGQMKKFGRIAIC 236 (325)
T ss_pred CCCeEEEEECCCH-HHHHHHHHHhCcCcEEEEe
Confidence 2469999876554 3558889999999999863
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >cd08301 alcohol_DH_plants Plant alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=93.05 E-value=0.44 Score=38.77 Aligned_cols=94 Identities=20% Similarity=0.173 Sum_probs=62.0
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEec-----CC---CC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWN-----GK---HG 118 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d-----~~---~~ 118 (204)
+.++.+||-.|+|. |.++..+++..+ ..++++++.++...+.++..- . . .++... .. ..
T Consensus 185 ~~~g~~VlV~G~g~vG~~a~q~ak~~G-~~~vi~~~~~~~~~~~~~~~G-a--------~--~~i~~~~~~~~~~~~v~~ 252 (369)
T cd08301 185 VKKGSTVAIFGLGAVGLAVAEGARIRG-ASRIIGVDLNPSKFEQAKKFG-V--------T--EFVNPKDHDKPVQEVIAE 252 (369)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHHcC-C--------c--eEEcccccchhHHHHHHH
Confidence 57889999999875 777777777753 227999999998888875421 1 1 111110 00 01
Q ss_pred CCCCCCeeEEEECCCccchhHHHHHhcCCC-cEEEEE
Q psy10572 119 YEREAPYDIIHVSPSYFTIPQKLLDQLVPG-GRMVMP 154 (204)
Q Consensus 119 ~~~~~~~D~v~~~~~~~~~~~~~~~~Lk~g-G~l~~~ 154 (204)
.. .+.+|+++-..+.......+...++++ |++++.
T Consensus 253 ~~-~~~~d~vid~~G~~~~~~~~~~~~~~~~g~~v~~ 288 (369)
T cd08301 253 MT-GGGVDYSFECTGNIDAMISAFECVHDGWGVTVLL 288 (369)
T ss_pred Hh-CCCCCEEEECCCChHHHHHHHHHhhcCCCEEEEE
Confidence 11 236899987766666778888999996 888764
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the |
| >cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=93.00 E-value=1.9 Score=34.22 Aligned_cols=90 Identities=21% Similarity=0.220 Sum_probs=58.7
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCee
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYD 126 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D 126 (204)
+.++.+||-.|+|. |..+..+++..+ .+++.++.++...+.+++. .. . .++..+ .. ....+|
T Consensus 165 ~~~~~~vlV~g~g~vg~~~~~la~~~g--~~v~~~~~~~~~~~~~~~~-g~--------~--~~~~~~--~~--~~~~vD 227 (329)
T cd08298 165 LKPGQRLGLYGFGASAHLALQIARYQG--AEVFAFTRSGEHQELAREL-GA--------D--WAGDSD--DL--PPEPLD 227 (329)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCC--CeEEEEcCChHHHHHHHHh-CC--------c--EEeccC--cc--CCCccc
Confidence 56778888888775 666666667653 5889998888766666431 11 0 111111 11 224589
Q ss_pred EEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 127 IIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 127 ~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
+++.........+.+.+.|+++|.++..
T Consensus 228 ~vi~~~~~~~~~~~~~~~l~~~G~~v~~ 255 (329)
T cd08298 228 AAIIFAPVGALVPAALRAVKKGGRVVLA 255 (329)
T ss_pred EEEEcCCcHHHHHHHHHHhhcCCEEEEE
Confidence 8887655556788999999999999863
|
These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha |
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=92.76 E-value=0.066 Score=35.57 Aligned_cols=35 Identities=20% Similarity=0.283 Sum_probs=24.9
Q ss_pred CeeEEEECCCccc------------hhHHHHHhcCCCcEEEEEecCC
Q psy10572 124 PYDIIHVSPSYFT------------IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 124 ~~D~v~~~~~~~~------------~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
.||+|+|....-+ +++.+...|+|||.+++.--++
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w 47 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPW 47 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---H
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCc
Confidence 4899998877644 4578999999999999965444
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH) | Back alignment and domain information |
|---|
Probab=92.70 E-value=2.1 Score=34.57 Aligned_cols=95 Identities=18% Similarity=0.180 Sum_probs=59.7
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHHHhCCCc-eEEEEEcCHHHHHHHHHHhhhcCccccCccce-EEEEecC------CCCC
Q psy10572 49 KPGARILDIGSGS-GYLTACLAYMAGPEG-RVYGVEHVMELAESSIKNIDKGNSELLDQGRV-QFVVWNG------KHGY 119 (204)
Q Consensus 49 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~d~------~~~~ 119 (204)
.++.+||-.|+|. |..+..+++..+ . ++++++.++...+.+++. . ...+ .....+. ....
T Consensus 176 ~~g~~vlI~g~g~vG~~~~~lak~~G--~~~v~~~~~~~~~~~~~~~~-g--------~~~vi~~~~~~~~~~~~~i~~~ 244 (361)
T cd08231 176 GAGDTVVVQGAGPLGLYAVAAAKLAG--ARRVIVIDGSPERLELAREF-G--------ADATIDIDELPDPQRRAIVRDI 244 (361)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC--CCeEEEEcCCHHHHHHHHHc-C--------CCeEEcCcccccHHHHHHHHHH
Confidence 4778888888765 667777777753 4 799998888776666432 1 1110 0000000 0011
Q ss_pred CCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 120 EREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 120 ~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
.....+|+++.............+.|+++|+++..
T Consensus 245 ~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~ 279 (361)
T cd08231 245 TGGRGADVVIEASGHPAAVPEGLELLRRGGTYVLV 279 (361)
T ss_pred hCCCCCcEEEECCCChHHHHHHHHHhccCCEEEEE
Confidence 22346999987765555678889999999999864
|
This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino |
| >cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase | Back alignment and domain information |
|---|
Probab=92.68 E-value=0.65 Score=37.39 Aligned_cols=97 Identities=20% Similarity=0.138 Sum_probs=61.1
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCc-eEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCC---CCCCC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEG-RVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKH---GYERE 122 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~---~~~~~ 122 (204)
+.++.+||-.|+|. |..+..+++..+ . .+++++.++...+.+++.-.. .-+.....+... .....
T Consensus 170 ~~~g~~vlI~g~g~vG~~a~q~a~~~G--~~~v~~~~~~~~~~~~~~~~ga~--------~~i~~~~~~~~~~l~~~~~~ 239 (351)
T cd08233 170 FKPGDTALVLGAGPIGLLTILALKAAG--ASKIIVSEPSEARRELAEELGAT--------IVLDPTEVDVVAEVRKLTGG 239 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CCEEEEECCCHHHHHHHHHhCCC--------EEECCCccCHHHHHHHHhCC
Confidence 56788888888764 666667777653 4 788998888887777542111 000001111110 11222
Q ss_pred CCeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 123 APYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 123 ~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
..+|+++-..+.......+.+.|+++|.++..
T Consensus 240 ~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~ 271 (351)
T cd08233 240 GGVDVSFDCAGVQATLDTAIDALRPRGTAVNV 271 (351)
T ss_pred CCCCEEEECCCCHHHHHHHHHhccCCCEEEEE
Confidence 35999998776556778889999999998764
|
(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. |
| >cd08234 threonine_DH_like L-threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=92.67 E-value=1.8 Score=34.45 Aligned_cols=95 Identities=22% Similarity=0.218 Sum_probs=60.9
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCce-EEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCC----CCCC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGR-VYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKH----GYER 121 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~----~~~~ 121 (204)
+.++.+||..|+|. |..+..+++..+ .+ +++++.++...+.+++.. . . .++..+-.. ....
T Consensus 157 ~~~g~~vlI~g~g~vg~~~~~la~~~G--~~~v~~~~~~~~~~~~~~~~g-~--------~--~~~~~~~~~~~~~~~~~ 223 (334)
T cd08234 157 IKPGDSVLVFGAGPIGLLLAQLLKLNG--ASRVTVAEPNEEKLELAKKLG-A--------T--ETVDPSREDPEAQKEDN 223 (334)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHHhC-C--------e--EEecCCCCCHHHHHHhc
Confidence 56788999998763 666666777653 34 888888888777764321 1 1 111111010 0112
Q ss_pred CCCeeEEEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 122 EAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 122 ~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
...+|+++...........+.+.|+++|+++..-
T Consensus 224 ~~~vd~v~~~~~~~~~~~~~~~~l~~~G~~v~~g 257 (334)
T cd08234 224 PYGFDVVIEATGVPKTLEQAIEYARRGGTVLVFG 257 (334)
T ss_pred CCCCcEEEECCCChHHHHHHHHHHhcCCEEEEEe
Confidence 3569999987655567788899999999997643
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=92.59 E-value=0.68 Score=37.25 Aligned_cols=100 Identities=21% Similarity=0.141 Sum_probs=62.5
Q ss_pred CCCCCEEEEEcCCC--cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC---CCCC
Q psy10572 48 IKPGARILDIGSGS--GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG---YERE 122 (204)
Q Consensus 48 ~~~~~~vLdiG~G~--G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~ 122 (204)
++++.+||-.|... |.+++.+++..+ +.++++-.++.-.+.+++...+ .-+.+...|+.+. ....
T Consensus 140 l~~g~~VLV~gaaGgVG~~aiQlAk~~G--~~~v~~~~s~~k~~~~~~lGAd--------~vi~y~~~~~~~~v~~~t~g 209 (326)
T COG0604 140 LKPGETVLVHGAAGGVGSAAIQLAKALG--ATVVAVVSSSEKLELLKELGAD--------HVINYREEDFVEQVRELTGG 209 (326)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHHHcC--CcEEEEecCHHHHHHHHhcCCC--------EEEcCCcccHHHHHHHHcCC
Confidence 67899999888443 778888899874 2566666666655555544322 1233333333221 1222
Q ss_pred CCeeEEEECCCccchhHHHHHhcCCCcEEEEEecCC
Q psy10572 123 APYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 123 ~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
..+|+|+..-.-. ........|+++|+++..-...
T Consensus 210 ~gvDvv~D~vG~~-~~~~~l~~l~~~G~lv~ig~~~ 244 (326)
T COG0604 210 KGVDVVLDTVGGD-TFAASLAALAPGGRLVSIGALS 244 (326)
T ss_pred CCceEEEECCCHH-HHHHHHHHhccCCEEEEEecCC
Confidence 4699997655544 4456889999999998865544
|
|
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=92.46 E-value=1 Score=35.71 Aligned_cols=94 Identities=16% Similarity=0.120 Sum_probs=60.5
Q ss_pred CCCCCEEEEEcC-C-CcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccce-EEEEecCCC---CCCC
Q psy10572 48 IKPGARILDIGS-G-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRV-QFVVWNGKH---GYER 121 (204)
Q Consensus 48 ~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~d~~~---~~~~ 121 (204)
+.++.+||-.|+ | .|..+..+++..+ +++++++.++...+.++..- . ..+ .....+... ....
T Consensus 141 ~~~g~~vlI~ga~g~vG~~aiqlA~~~G--~~vi~~~~s~~~~~~l~~~G-a--------~~vi~~~~~~~~~~v~~~~~ 209 (329)
T cd08294 141 PKAGETVVVNGAAGAVGSLVGQIAKIKG--CKVIGCAGSDDKVAWLKELG-F--------DAVFNYKTVSLEEALKEAAP 209 (329)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHcC-C--------CEEEeCCCccHHHHHHHHCC
Confidence 577889988874 3 3777888888764 58999998888777776521 1 111 000111110 1112
Q ss_pred CCCeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 122 EAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 122 ~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
..+|+|+-...- .......+.|+++|+++..
T Consensus 210 -~gvd~vld~~g~-~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 210 -DGIDCYFDNVGG-EFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred -CCcEEEEECCCH-HHHHHHHHhhccCCEEEEE
Confidence 469999865554 5668889999999998763
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >KOG2651|consensus | Back alignment and domain information |
|---|
Probab=92.39 E-value=0.65 Score=37.89 Aligned_cols=44 Identities=25% Similarity=0.336 Sum_probs=34.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHH
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKN 94 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~ 94 (204)
.+-..|+|+|.|.|+++..++-..+ -.|.+||-|....+.|+..
T Consensus 152 ~gi~~vvD~GaG~G~LSr~lSl~y~--lsV~aIegsq~~~~ra~rL 195 (476)
T KOG2651|consen 152 TGIDQVVDVGAGQGHLSRFLSLGYG--LSVKAIEGSQRLVERAQRL 195 (476)
T ss_pred cCCCeeEEcCCCchHHHHHHhhccC--ceEEEeccchHHHHHHHHH
Confidence 4557999999999999999987653 4899999887666665443
|
|
| >cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=92.38 E-value=0.45 Score=38.04 Aligned_cols=97 Identities=18% Similarity=0.169 Sum_probs=61.7
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCC---CCCCCCC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGK---HGYEREA 123 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~---~~~~~~~ 123 (204)
+.++.+||..|+|. |..+..+++..+ .+++++..++...+.++..... .-+.....+.. ....+..
T Consensus 157 l~~g~~vLI~g~g~vG~~a~~lA~~~g--~~v~~~~~s~~~~~~~~~~g~~--------~v~~~~~~~~~~~l~~~~~~~ 226 (337)
T cd08261 157 VTAGDTVLVVGAGPIGLGVIQVAKARG--ARVIVVDIDDERLEFARELGAD--------DTINVGDEDVAARLRELTDGE 226 (337)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEECCCHHHHHHHHHhCCC--------EEecCcccCHHHHHHHHhCCC
Confidence 57888999998764 677777777753 5888888788777766442111 00111111110 0112234
Q ss_pred CeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 124 PYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 124 ~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
.+|+++...........+.+.|+++|.++..
T Consensus 227 ~vd~vld~~g~~~~~~~~~~~l~~~G~~i~~ 257 (337)
T cd08261 227 GADVVIDATGNPASMEEAVELVAHGGRVVLV 257 (337)
T ss_pred CCCEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence 5999988755556678889999999998864
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, |
| >COG1568 Predicted methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.35 E-value=1.1 Score=35.05 Aligned_cols=102 Identities=15% Similarity=0.154 Sum_probs=68.1
Q ss_pred CCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCC--CCCeeEE
Q psy10572 51 GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYER--EAPYDII 128 (204)
Q Consensus 51 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~D~v 128 (204)
++.|+-+| -.-..++.++-.. ..-++..+|+++..++...+..... +..|++.+.-|+....++ ...||+.
T Consensus 153 gK~I~vvG-DDDLtsia~aLt~-mpk~iaVvDIDERli~fi~k~aee~-----g~~~ie~~~~Dlr~plpe~~~~kFDvf 225 (354)
T COG1568 153 GKEIFVVG-DDDLTSIALALTG-MPKRIAVVDIDERLIKFIEKVAEEL-----GYNNIEAFVFDLRNPLPEDLKRKFDVF 225 (354)
T ss_pred CCeEEEEc-CchhhHHHHHhcC-CCceEEEEechHHHHHHHHHHHHHh-----CccchhheeehhcccChHHHHhhCCee
Confidence 45688888 3333444443332 2238899999999999998887763 356789999998776544 3689999
Q ss_pred EECCCccc-----hhHHHHHhcCCC---cEEEEEecCCC
Q psy10572 129 HVSPSYFT-----IPQKLLDQLVPG---GRMVMPVGEPF 159 (204)
Q Consensus 129 ~~~~~~~~-----~~~~~~~~Lk~g---G~l~~~~~~~~ 159 (204)
+.+++..- ++.+-...||.- |++.++.....
T Consensus 226 iTDPpeTi~alk~FlgRGI~tLkg~~~aGyfgiT~ress 264 (354)
T COG1568 226 ITDPPETIKALKLFLGRGIATLKGEGCAGYFGITRRESS 264 (354)
T ss_pred ecCchhhHHHHHHHHhccHHHhcCCCccceEeeeecccc
Confidence 98877632 223334556655 77777665443
|
|
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=92.28 E-value=0.6 Score=39.43 Aligned_cols=90 Identities=16% Similarity=-0.045 Sum_probs=59.1
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 49 KPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 49 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
-.+++|+-+|+|. |......++.+ +++|+.+|.++.....+... .+.+. +..+. . ...|+
T Consensus 252 LaGKtVgVIG~G~IGr~vA~rL~a~--Ga~ViV~e~dp~~a~~A~~~------------G~~~~--~leel-l--~~ADI 312 (476)
T PTZ00075 252 IAGKTVVVCGYGDVGKGCAQALRGF--GARVVVTEIDPICALQAAME------------GYQVV--TLEDV-V--ETADI 312 (476)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCchhHHHHHhc------------Cceec--cHHHH-H--hcCCE
Confidence 4678999999997 65555555544 35899999887755443221 12222 11111 1 35899
Q ss_pred EEECCCccchh-HHHHHhcCCCcEEEEEecC
Q psy10572 128 IHVSPSYFTIP-QKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 128 v~~~~~~~~~~-~~~~~~Lk~gG~l~~~~~~ 157 (204)
|+......+++ ......+|||++|+-.-..
T Consensus 313 VI~atGt~~iI~~e~~~~MKpGAiLINvGr~ 343 (476)
T PTZ00075 313 FVTATGNKDIITLEHMRRMKNNAIVGNIGHF 343 (476)
T ss_pred EEECCCcccccCHHHHhccCCCcEEEEcCCC
Confidence 99887776766 5899999999999775433
|
|
| >cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=92.23 E-value=0.83 Score=37.14 Aligned_cols=95 Identities=18% Similarity=0.182 Sum_probs=63.0
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEec---CC---CCCC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWN---GK---HGYE 120 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d---~~---~~~~ 120 (204)
+.++.+||-.|+|. |..+..+++..+ ...+++++.++...+.++..-. -.++..+ .. ....
T Consensus 184 ~~~g~~vlI~g~g~vG~~~~~la~~~G-~~~v~~~~~~~~k~~~~~~~g~-----------~~~i~~~~~~~~~~v~~~~ 251 (365)
T cd08278 184 PRPGSSIAVFGAGAVGLAAVMAAKIAG-CTTIIAVDIVDSRLELAKELGA-----------THVINPKEEDLVAAIREIT 251 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHcCC-----------cEEecCCCcCHHHHHHHHh
Confidence 56788999888875 777777788763 2269999999887776654211 1111111 00 0011
Q ss_pred CCCCeeEEEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 121 REAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 121 ~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
...+|+++-..+.......+.+.|+++|.++..-
T Consensus 252 -~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g 285 (365)
T cd08278 252 -GGGVDYALDTTGVPAVIEQAVDALAPRGTLALVG 285 (365)
T ss_pred -CCCCcEEEECCCCcHHHHHHHHHhccCCEEEEeC
Confidence 3469999887666667889999999999988643
|
Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu |
| >cd05285 sorbitol_DH Sorbitol dehydrogenase | Back alignment and domain information |
|---|
Probab=92.22 E-value=1.1 Score=35.93 Aligned_cols=97 Identities=20% Similarity=0.182 Sum_probs=60.9
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCce-EEEEEcCHHHHHHHHHHhhhcCccccCccce-EEEEecC------CCC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGR-VYGVEHVMELAESSIKNIDKGNSELLDQGRV-QFVVWNG------KHG 118 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~d~------~~~ 118 (204)
+.++.+||-.|+|. |..+..+++..+ .+ +++++.++...+.+++. .. ..+ .....+. ...
T Consensus 160 ~~~g~~vlI~g~g~vG~~a~~lak~~G--~~~v~~~~~~~~~~~~~~~~-g~--------~~vi~~~~~~~~~~~~~~~~ 228 (343)
T cd05285 160 VRPGDTVLVFGAGPIGLLTAAVAKAFG--ATKVVVTDIDPSRLEFAKEL-GA--------THTVNVRTEDTPESAEKIAE 228 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHHc-CC--------cEEeccccccchhHHHHHHH
Confidence 57888988887765 667777777753 34 88888787776666442 11 110 0011110 011
Q ss_pred CCCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 119 YEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 119 ~~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
......+|+|+.............+.|+++|+++..-
T Consensus 229 ~~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 229 LLGGKGPDVVIECTGAESCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred HhCCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEc
Confidence 1223459999887665557788899999999987643
|
Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=92.20 E-value=1.1 Score=35.93 Aligned_cols=93 Identities=17% Similarity=0.232 Sum_probs=59.5
Q ss_pred CCCC--CEEEEEcC-C-CcHHHHHHHHHhCCCc-eEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe---cCCC--
Q psy10572 48 IKPG--ARILDIGS-G-SGYLTACLAYMAGPEG-RVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW---NGKH-- 117 (204)
Q Consensus 48 ~~~~--~~vLdiG~-G-~G~~~~~l~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---d~~~-- 117 (204)
+.++ .+||-.|+ | .|..+..+++..+ + ++++++.++...+.+++.+.. .. ++.. +..+
T Consensus 150 ~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G--~~~Vi~~~~s~~~~~~~~~~lGa--------~~--vi~~~~~~~~~~i 217 (345)
T cd08293 150 ITPGANQTMVVSGAAGACGSLAGQIGRLLG--CSRVVGICGSDEKCQLLKSELGF--------DA--AINYKTDNVAERL 217 (345)
T ss_pred CCCCCCCEEEEECCCcHHHHHHHHHHHHcC--CCEEEEEcCCHHHHHHHHHhcCC--------cE--EEECCCCCHHHHH
Confidence 4444 78988886 3 4778888888753 4 799999888877776653221 11 1111 1110
Q ss_pred -CCCCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 118 -GYEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 118 -~~~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
.... ..+|+|+...... ......+.|+++|+++..
T Consensus 218 ~~~~~-~gvd~vid~~g~~-~~~~~~~~l~~~G~iv~~ 253 (345)
T cd08293 218 RELCP-EGVDVYFDNVGGE-ISDTVISQMNENSHIILC 253 (345)
T ss_pred HHHCC-CCceEEEECCCcH-HHHHHHHHhccCCEEEEE
Confidence 1112 4699998765544 458889999999999863
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=92.16 E-value=0.19 Score=38.18 Aligned_cols=47 Identities=19% Similarity=0.200 Sum_probs=32.3
Q ss_pred EEEEecCCCC--CCCCCCeeEEEECCCcc---------------------chhHHHHHhcCCCcEEEEEe
Q psy10572 109 QFVVWNGKHG--YEREAPYDIIHVSPSYF---------------------TIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 109 ~~~~~d~~~~--~~~~~~~D~v~~~~~~~---------------------~~~~~~~~~Lk~gG~l~~~~ 155 (204)
+++++|..+. ..+.+++|+|+.++++. .++.++.++|||||.+++.+
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~ 72 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFY 72 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 4566665533 34557788888887763 13467889999999988643
|
|
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=92.09 E-value=1.6 Score=35.10 Aligned_cols=74 Identities=14% Similarity=0.082 Sum_probs=50.9
Q ss_pred CCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCC---CCCeeE
Q psy10572 51 GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYER---EAPYDI 127 (204)
Q Consensus 51 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~D~ 127 (204)
..+++|+.||.|.+..-+....- --+.++|+++.+++.-+.+... ..++..|....... ...+|+
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf--~~~~a~Eid~~a~~ty~~n~~~----------~~~~~~di~~~~~~~~~~~~~Dv 70 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGF--EIVFANEIDPPAVATYKANFPH----------GDIILGDIKELDGEALRKSDVDV 70 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCC--eEEEEEecCHHHHHHHHHhCCC----------CceeechHhhcChhhccccCCCE
Confidence 45899999999999877766541 1577889999988888777542 33445554432211 117899
Q ss_pred EEECCCccc
Q psy10572 128 IHVSPSYFT 136 (204)
Q Consensus 128 v~~~~~~~~ 136 (204)
++..+++..
T Consensus 71 ligGpPCQ~ 79 (328)
T COG0270 71 LIGGPPCQD 79 (328)
T ss_pred EEeCCCCcc
Confidence 999888754
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=91.90 E-value=0.6 Score=38.29 Aligned_cols=95 Identities=17% Similarity=0.116 Sum_probs=55.9
Q ss_pred CCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEE
Q psy10572 50 PGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDII 128 (204)
Q Consensus 50 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 128 (204)
++.+|+-+|+|. |..+...++.++ ++|+.+|.++...+.+...+.. .+.....+.......-..+|+|
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lG--a~V~v~d~~~~~~~~l~~~~g~---------~v~~~~~~~~~l~~~l~~aDvV 234 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLG--ATVTILDINIDRLRQLDAEFGG---------RIHTRYSNAYEIEDAVKRADLL 234 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCC--CeEEEEECCHHHHHHHHHhcCc---------eeEeccCCHHHHHHHHccCCEE
Confidence 345799999985 777777777654 4899999998776655443211 1111111100000001358999
Q ss_pred EECCCc-----cc-hhHHHHHhcCCCcEEEEEe
Q psy10572 129 HVSPSY-----FT-IPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 129 ~~~~~~-----~~-~~~~~~~~Lk~gG~l~~~~ 155 (204)
+..... +. +.+...+.+++++.++-.-
T Consensus 235 I~a~~~~g~~~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 235 IGAVLIPGAKAPKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred EEccccCCCCCCcCcCHHHHhcCCCCCEEEEEe
Confidence 876422 22 3477778899998776533
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=91.80 E-value=2 Score=34.42 Aligned_cols=95 Identities=18% Similarity=0.139 Sum_probs=61.6
Q ss_pred CCCCCEEEEEcC-C-CcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccc-eEEEEe-cCC---CCCC
Q psy10572 48 IKPGARILDIGS-G-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGR-VQFVVW-NGK---HGYE 120 (204)
Q Consensus 48 ~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~-d~~---~~~~ 120 (204)
+.++.+||-.|+ | .|.++..+++..+ +++++++.++...+.+++.+.. .. +..... +.. ....
T Consensus 149 ~~~g~~VlI~Ga~G~vG~~aiqlAk~~G--~~Vi~~~~~~~~~~~~~~~lGa--------~~vi~~~~~~~~~~~i~~~~ 218 (338)
T cd08295 149 PKKGETVFVSAASGAVGQLVGQLAKLKG--CYVVGSAGSDEKVDLLKNKLGF--------DDAFNYKEEPDLDAALKRYF 218 (338)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHhcCC--------ceeEEcCCcccHHHHHHHhC
Confidence 578899998886 3 3777777888754 5899988888877777653221 11 110011 111 1111
Q ss_pred CCCCeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 121 REAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 121 ~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
. ..+|+|+-...- .......+.|+++|+++..
T Consensus 219 ~-~gvd~v~d~~g~-~~~~~~~~~l~~~G~iv~~ 250 (338)
T cd08295 219 P-NGIDIYFDNVGG-KMLDAVLLNMNLHGRIAAC 250 (338)
T ss_pred C-CCcEEEEECCCH-HHHHHHHHHhccCcEEEEe
Confidence 2 469999876554 5678889999999999863
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like | Back alignment and domain information |
|---|
Probab=91.79 E-value=1.1 Score=35.91 Aligned_cols=98 Identities=15% Similarity=0.135 Sum_probs=59.1
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCC---CCCCCCC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGK---HGYEREA 123 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~---~~~~~~~ 123 (204)
+.++.+||-.|+|. |..+..+++..+ ..++++++.++.....++..-.. .-+.....+.. .......
T Consensus 164 ~~~g~~vlI~g~g~~g~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~~g~~--------~~v~~~~~~~~~~i~~~~~~~ 234 (345)
T cd08286 164 VKPGDTVAIVGAGPVGLAALLTAQLYS-PSKIIMVDLDDNRLEVAKKLGAT--------HTVNSAKGDAIEQVLELTDGR 234 (345)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHHhCCC--------ceeccccccHHHHHHHHhCCC
Confidence 46778888777764 566666777653 24788898888776666542110 00111111110 1112234
Q ss_pred CeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 124 PYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 124 ~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
.+|+++.........+.+.+.|+++|.++..
T Consensus 235 ~~d~vld~~g~~~~~~~~~~~l~~~g~~v~~ 265 (345)
T cd08286 235 GVDVVIEAVGIPATFELCQELVAPGGHIANV 265 (345)
T ss_pred CCCEEEECCCCHHHHHHHHHhccCCcEEEEe
Confidence 6999987655445678888999999998764
|
This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers ( |
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=91.69 E-value=0.34 Score=38.55 Aligned_cols=90 Identities=17% Similarity=0.141 Sum_probs=57.0
Q ss_pred EEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC---CCCCCeeEEE
Q psy10572 53 RILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY---EREAPYDIIH 129 (204)
Q Consensus 53 ~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D~v~ 129 (204)
+++|+.||.|.++.-+.... - -.+.++|+++.+.+.-+.|. + ....+|+.+.. .+. .+|+++
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag-~-~~~~a~e~~~~a~~~y~~N~----------~--~~~~~Di~~~~~~~l~~-~~D~l~ 66 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAG-F-EVVWAVEIDPDACETYKANF----------P--EVICGDITEIDPSDLPK-DVDLLI 66 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTT-E-EEEEEEESSHHHHHHHHHHH----------T--EEEESHGGGCHHHHHHH-T-SEEE
T ss_pred cEEEEccCccHHHHHHHhcC-c-EEEEEeecCHHHHHhhhhcc----------c--ccccccccccccccccc-cceEEE
Confidence 68999999999998887764 1 26889999999888887775 2 56677765432 222 599999
Q ss_pred ECCCccc----------------hh---HHHHHhcCCCcEEEEEecC
Q psy10572 130 VSPSYFT----------------IP---QKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 130 ~~~~~~~----------------~~---~~~~~~Lk~gG~l~~~~~~ 157 (204)
..+++.. +. -++.+.++|.-.++=.+.+
T Consensus 67 ggpPCQ~fS~ag~~~~~~d~r~~L~~~~~~~v~~~~Pk~~~~ENV~~ 113 (335)
T PF00145_consen 67 GGPPCQGFSIAGKRKGFDDPRNSLFFEFLRIVKELKPKYFLLENVPG 113 (335)
T ss_dssp EE---TTTSTTSTHHCCCCHTTSHHHHHHHHHHHHS-SEEEEEEEGG
T ss_pred eccCCceEeccccccccccccchhhHHHHHHHhhccceEEEecccce
Confidence 8877643 11 3445667776655544443
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.67 E-value=5.1 Score=31.00 Aligned_cols=103 Identities=12% Similarity=0.115 Sum_probs=65.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCC---CceEEEEEcCHHHHHHHHHHhhhcCccccCccceEE--EEecCCCCC--CC
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGP---EGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQF--VVWNGKHGY--ER 121 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~d~~~~~--~~ 121 (204)
-.+...+|+|+|+..-+..+...+.+ ...++.+|++...+....+.+... .+.+++ +.+|..... .+
T Consensus 77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~------y~~l~v~~l~~~~~~~La~~~ 150 (321)
T COG4301 77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILRE------YPGLEVNALCGDYELALAELP 150 (321)
T ss_pred hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHh------CCCCeEeehhhhHHHHHhccc
Confidence 45789999999999988888776632 258999999999887655554331 233333 455544211 22
Q ss_pred CCCeeEE-EECCCcc--------chhHHHHHhcCCCcEEEEEecC
Q psy10572 122 EAPYDII-HVSPSYF--------TIPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 122 ~~~~D~v-~~~~~~~--------~~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
..+--++ +....+. .++.++...|+||-.+++-+.-
T Consensus 151 ~~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl 195 (321)
T COG4301 151 RGGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDL 195 (321)
T ss_pred CCCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEeccc
Confidence 2222222 3222221 2567889999999999885543
|
|
| >KOG3924|consensus | Back alignment and domain information |
|---|
Probab=91.59 E-value=1 Score=36.89 Aligned_cols=113 Identities=18% Similarity=0.237 Sum_probs=72.5
Q ss_pred HHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhh-------hcCccccCccce
Q psy10572 36 IHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNID-------KGNSELLDQGRV 108 (204)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~-------~~~~~~~~~~~~ 108 (204)
....+.+.+. ++++....|+|+|.|.+...++... ....-.|+|+....-+.+..+.. ..+. ....+
T Consensus 180 ql~si~dEl~--~g~~D~F~DLGSGVGqlv~~~aa~a-~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk---~~~~~ 253 (419)
T KOG3924|consen 180 QLRSIVDELK--LGPADVFMDLGSGVGQLVCFVAAYA-GCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGK---KPNKI 253 (419)
T ss_pred HHHHHHHHhc--cCCCCcccCCCcccchhhHHHHHhh-ccccccceeeecCcHHHHHHHHHHHHHHHHHhCC---CcCce
Confidence 4444455554 7899999999999999998888776 34467788876655544444332 1221 12457
Q ss_pred EEEEecCCCCCCC---CCCeeEEEECCCccc-----hhHHHHHhcCCCcEEEEE
Q psy10572 109 QFVVWNGKHGYER---EAPYDIIHVSPSYFT-----IPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 109 ~~~~~d~~~~~~~---~~~~D~v~~~~~~~~-----~~~~~~~~Lk~gG~l~~~ 154 (204)
..+++++.....- ....++|++|....+ -..+++.-+++|-+++-.
T Consensus 254 ~~i~gsf~~~~~v~eI~~eatvi~vNN~~Fdp~L~lr~~eil~~ck~gtrIiS~ 307 (419)
T KOG3924|consen 254 ETIHGSFLDPKRVTEIQTEATVIFVNNVAFDPELKLRSKEILQKCKDGTRIISS 307 (419)
T ss_pred eecccccCCHHHHHHHhhcceEEEEecccCCHHHHHhhHHHHhhCCCcceEecc
Confidence 7788876543211 134778887765543 124788889999998763
|
|
| >PRK10083 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=91.53 E-value=1.1 Score=35.86 Aligned_cols=99 Identities=12% Similarity=-0.005 Sum_probs=58.8
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCC-CCCCe
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE-REAPY 125 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~ 125 (204)
+.++.+|+-.|+|. |..+..+++.......+++++.++...+.+++.-.... +.....+...... ....+
T Consensus 158 ~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~--------i~~~~~~~~~~~~~~g~~~ 229 (339)
T PRK10083 158 PTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADWV--------INNAQEPLGEALEEKGIKP 229 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCcEE--------ecCccccHHHHHhcCCCCC
Confidence 57788999999765 66666666642022258889988888777765321100 0000111111111 11235
Q ss_pred eEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 126 DIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 126 D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
|+++.............+.|+++|+++..
T Consensus 230 d~vid~~g~~~~~~~~~~~l~~~G~~v~~ 258 (339)
T PRK10083 230 TLIIDAACHPSILEEAVTLASPAARIVLM 258 (339)
T ss_pred CEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 67776655455678889999999999874
|
|
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
Probab=91.38 E-value=0.46 Score=38.02 Aligned_cols=69 Identities=12% Similarity=-0.001 Sum_probs=45.8
Q ss_pred EEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCC-CCCCeeEEEECC
Q psy10572 54 ILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE-REAPYDIIHVSP 132 (204)
Q Consensus 54 vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~v~~~~ 132 (204)
|+|+.||.|.++.-+.+..- -.+.++|+++.+++.-+.+... .+..+|+.+... ....+|+++..+
T Consensus 1 vidLF~G~GG~~~Gl~~aG~--~~~~a~e~~~~a~~ty~~N~~~-----------~~~~~Di~~~~~~~~~~~dvl~gg~ 67 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGF--KCVFASEIDKYAQKTYEANFGN-----------KVPFGDITKISPSDIPDFDILLGGF 67 (315)
T ss_pred CEEEecCccHHHHHHHHcCC--eEEEEEeCCHHHHHHHHHhCCC-----------CCCccChhhhhhhhCCCcCEEEecC
Confidence 58999999999987776531 1466799999998888777532 233455443221 113589998877
Q ss_pred Ccc
Q psy10572 133 SYF 135 (204)
Q Consensus 133 ~~~ 135 (204)
++.
T Consensus 68 PCq 70 (315)
T TIGR00675 68 PCQ 70 (315)
T ss_pred CCc
Confidence 663
|
All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK10458 DNA cytosine methylase; Provisional | Back alignment and domain information |
|---|
Probab=91.24 E-value=1.3 Score=37.41 Aligned_cols=43 Identities=19% Similarity=0.220 Sum_probs=34.1
Q ss_pred CCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHh
Q psy10572 51 GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNI 95 (204)
Q Consensus 51 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~ 95 (204)
..+++|+.||.|.+..-+..... -.+.++|+++.+.+.-+.|.
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~--~~v~a~Eid~~A~~TY~~N~ 130 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGG--QCVFTSEWNKHAVRTYKANW 130 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCC--EEEEEEechHHHHHHHHHHc
Confidence 45999999999999888866532 25788999998887777765
|
|
| >PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function | Back alignment and domain information |
|---|
Probab=91.11 E-value=0.66 Score=32.78 Aligned_cols=39 Identities=31% Similarity=0.359 Sum_probs=26.0
Q ss_pred EEcCCCc--HHHHHHH-HHhCCCceEEEEEcCHHHHHHHHHH
Q psy10572 56 DIGSGSG--YLTACLA-YMAGPEGRVYGVEHVMELAESSIKN 94 (204)
Q Consensus 56 diG~G~G--~~~~~l~-~~~~~~~~v~~vD~~~~~~~~a~~~ 94 (204)
|||+..| .....+. +...+.++++++|+++...+..+.+
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 6555554 2444677999999999999998888
|
; PDB: 2PY6_A. |
| >cd05281 TDH Threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=91.09 E-value=3.9 Score=32.75 Aligned_cols=98 Identities=18% Similarity=0.130 Sum_probs=58.8
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCC--CCCCCCCC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGK--HGYEREAP 124 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~ 124 (204)
..++.+||-.|+|. |..+..+++..+ ..++++++.++...+.++..-.. .-+.....+.. ......+.
T Consensus 161 ~~~g~~vlV~g~g~vg~~~~~la~~~G-~~~v~~~~~~~~~~~~~~~~g~~--------~~~~~~~~~~~~~~~~~~~~~ 231 (341)
T cd05281 161 DVSGKSVLITGCGPIGLMAIAVAKAAG-ASLVIASDPNPYRLELAKKMGAD--------VVINPREEDVVEVKSVTDGTG 231 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHHhCcc--------eeeCcccccHHHHHHHcCCCC
Confidence 35677888777764 667777777753 22688887777666555432110 00000011110 01122356
Q ss_pred eeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 125 YDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 125 ~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
+|+++...........+.+.|+++|.++..
T Consensus 232 vd~vld~~g~~~~~~~~~~~l~~~G~~v~~ 261 (341)
T cd05281 232 VDVVLEMSGNPKAIEQGLKALTPGGRVSIL 261 (341)
T ss_pred CCEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 999998766666778889999999998764
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.82 E-value=1.1 Score=36.90 Aligned_cols=77 Identities=19% Similarity=0.194 Sum_probs=48.7
Q ss_pred CEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCC---CCCCeeE
Q psy10572 52 ARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE---REAPYDI 127 (204)
Q Consensus 52 ~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~D~ 127 (204)
.+||-||||. |......+... .+.+|+..|.+...+..+.... ..+++....|+..... --..+|+
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~-~d~~V~iAdRs~~~~~~i~~~~---------~~~v~~~~vD~~d~~al~~li~~~d~ 71 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQN-GDGEVTIADRSKEKCARIAELI---------GGKVEALQVDAADVDALVALIKDFDL 71 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhC-CCceEEEEeCCHHHHHHHHhhc---------cccceeEEecccChHHHHHHHhcCCE
Confidence 4789999974 55444332322 2369999999988877776543 2367778888664310 0134699
Q ss_pred EEECCCccchh
Q psy10572 128 IHVSPSYFTIP 138 (204)
Q Consensus 128 v~~~~~~~~~~ 138 (204)
|+...+...-.
T Consensus 72 VIn~~p~~~~~ 82 (389)
T COG1748 72 VINAAPPFVDL 82 (389)
T ss_pred EEEeCCchhhH
Confidence 98877765433
|
|
| >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=90.77 E-value=4.8 Score=29.85 Aligned_cols=112 Identities=21% Similarity=0.185 Sum_probs=67.0
Q ss_pred CChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHH---hCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccce
Q psy10572 32 SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYM---AGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRV 108 (204)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~ 108 (204)
..+.-...+.+.+. -.+...|+|+|+-.|..+++.+.. .+...+|+++|++-...+.+... .+.+
T Consensus 53 k~p~D~~~yQellw--~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e----------~p~i 120 (237)
T COG3510 53 KSPSDMWNYQELLW--ELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE----------VPDI 120 (237)
T ss_pred CCHHHHHHHHHHHH--hcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc----------CCCe
Confidence 34444445555555 245568999999998877776654 33446899999887654444321 3689
Q ss_pred EEEEecCCCCCC------CCCCeeEEEEC-CC---ccchh---HHHHHhcCCCcEEEEEe
Q psy10572 109 QFVVWNGKHGYE------REAPYDIIHVS-PS---YFTIP---QKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 109 ~~~~~d~~~~~~------~~~~~D~v~~~-~~---~~~~~---~~~~~~Lk~gG~l~~~~ 155 (204)
.+++++...... -++.+--|+.. .. ..+++ +.+..+|..|.++++.-
T Consensus 121 ~f~egss~dpai~eqi~~~~~~y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeD 180 (237)
T COG3510 121 LFIEGSSTDPAIAEQIRRLKNEYPKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVED 180 (237)
T ss_pred EEEeCCCCCHHHHHHHHHHhcCCCcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEec
Confidence 999998664321 01222233322 22 22233 45557888888888743
|
|
| >PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=90.63 E-value=1 Score=35.75 Aligned_cols=108 Identities=19% Similarity=0.131 Sum_probs=60.7
Q ss_pred CEEEEEcCCCcHHHHHHHHHh-------------------CCCceEEEEEcC--HHHHHHHHHHhhhc------------
Q psy10572 52 ARILDIGSGSGYLTACLAYMA-------------------GPEGRVYGVEHV--MELAESSIKNIDKG------------ 98 (204)
Q Consensus 52 ~~vLdiG~G~G~~~~~l~~~~-------------------~~~~~v~~vD~~--~~~~~~a~~~~~~~------------ 98 (204)
.+||.||.|.|.=...++..+ .+..+++.||+. ...++.....+...
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~ 167 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW 167 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence 699999999986444444333 011378999854 44555555544332
Q ss_pred CccccCccceEEEEecCCCCCCCC-------CCeeEEEECCCccc-----------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 99 NSELLDQGRVQFVVWNGKHGYERE-------APYDIIHVSPSYFT-----------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 99 ~~~~~~~~~~~~~~~d~~~~~~~~-------~~~D~v~~~~~~~~-----------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
.......=++.|.+.|+.....+. ...++|.....+.+ ++..+-..++||..|++.-.++.
T Consensus 168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSpGS 246 (315)
T PF11312_consen 168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSPGS 246 (315)
T ss_pred ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCCCC
Confidence 000011225778888876543211 13455543333222 44677788999999888665443
|
|
| >cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=90.57 E-value=1.5 Score=35.72 Aligned_cols=97 Identities=16% Similarity=0.082 Sum_probs=60.9
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe--cCC---CCCCC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW--NGK---HGYER 121 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--d~~---~~~~~ 121 (204)
+.++.+||-.|+|. |..+..+++..+ ...+++++.++...+.+++.-... -+..... +.. .....
T Consensus 181 ~~~g~~vlI~g~g~vG~~a~~~a~~~G-~~~v~~~~~~~~~~~~~~~~g~~~--------~v~~~~~~~~~~~~l~~~~~ 251 (365)
T cd05279 181 VTPGSTCAVFGLGGVGLSVIMGCKAAG-ASRIIAVDINKDKFEKAKQLGATE--------CINPRDQDKPIVEVLTEMTD 251 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHhCCCe--------ecccccccchHHHHHHHHhC
Confidence 57788988888875 667777777763 225888898888877775421110 0000011 110 01122
Q ss_pred CCCeeEEEECCCccchhHHHHHhcC-CCcEEEEE
Q psy10572 122 EAPYDIIHVSPSYFTIPQKLLDQLV-PGGRMVMP 154 (204)
Q Consensus 122 ~~~~D~v~~~~~~~~~~~~~~~~Lk-~gG~l~~~ 154 (204)
+.+|+++...+.........+.|+ ++|+++..
T Consensus 252 -~~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~ 284 (365)
T cd05279 252 -GGVDYAFEVIGSADTLKQALDATRLGGGTSVVV 284 (365)
T ss_pred -CCCcEEEECCCCHHHHHHHHHHhccCCCEEEEE
Confidence 469999876554567778889999 99998864
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall |
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.54 E-value=0.042 Score=38.86 Aligned_cols=43 Identities=16% Similarity=0.183 Sum_probs=34.8
Q ss_pred CCCCCCCCeeEEEECCCccch--------hHHHHHhcCCCcEEEEEecCCC
Q psy10572 117 HGYEREAPYDIIHVSPSYFTI--------PQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 117 ~~~~~~~~~D~v~~~~~~~~~--------~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
...+..++.|+|++-..+.|+ ++.+.+.|||||+|-+.+++..
T Consensus 40 e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~ 90 (185)
T COG4627 40 ESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLK 90 (185)
T ss_pred hccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcc
Confidence 345667889999887777663 4788899999999999998875
|
|
| >KOG2920|consensus | Back alignment and domain information |
|---|
Probab=90.53 E-value=0.46 Score=37.08 Aligned_cols=52 Identities=15% Similarity=0.139 Sum_probs=37.5
Q ss_pred HHHHHHHHHH-hccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHH
Q psy10572 35 HIHAQMLELL-KDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELA 88 (204)
Q Consensus 35 ~~~~~~~~~l-~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~ 88 (204)
+....+.+.+ ......+++|||+|||+|...+.+.... ...+...|.+...+
T Consensus 100 dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~--~~~~~fqD~na~vl 152 (282)
T KOG2920|consen 100 DLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKG--AVSVHFQDFNAEVL 152 (282)
T ss_pred HHHHHHHHHhhhheEecCceeEecCCcccccchhhhhhc--cceeeeEecchhhe
Confidence 3444444343 2335778999999999999998887764 25788889888876
|
|
| >cd05284 arabinose_DH_like D-arabinose dehydrogenase | Back alignment and domain information |
|---|
Probab=90.50 E-value=1.7 Score=34.73 Aligned_cols=95 Identities=16% Similarity=0.122 Sum_probs=60.0
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEec--C---CCCCCC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWN--G---KHGYER 121 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d--~---~~~~~~ 121 (204)
+.++.+||-.|+|. |..+..+++..+ ..++++++.++...+.++..- . . .++..+ . .....+
T Consensus 165 ~~~~~~vlI~g~~~vg~~~~~~a~~~g-~~~v~~~~~~~~~~~~~~~~g-~--------~--~~~~~~~~~~~~i~~~~~ 232 (340)
T cd05284 165 LDPGSTVVVIGVGGLGHIAVQILRALT-PATVIAVDRSEEALKLAERLG-A--------D--HVLNASDDVVEEVRELTG 232 (340)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHhC-C--------c--EEEcCCccHHHHHHHHhC
Confidence 46778899998765 556666677653 258888888887766664321 1 0 111111 0 011122
Q ss_pred CCCeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 122 EAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 122 ~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
...+|+++.........+.+.+.|+++|.++..
T Consensus 233 ~~~~dvvld~~g~~~~~~~~~~~l~~~g~~i~~ 265 (340)
T cd05284 233 GRGADAVIDFVGSDETLALAAKLLAKGGRYVIV 265 (340)
T ss_pred CCCCCEEEEcCCCHHHHHHHHHHhhcCCEEEEE
Confidence 246999987766556778889999999999864
|
This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d |
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=90.47 E-value=6 Score=29.65 Aligned_cols=99 Identities=19% Similarity=0.163 Sum_probs=58.2
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHh-CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC-----C---
Q psy10572 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-----E--- 120 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~--- 120 (204)
++++||-.|++ |.++..+++.+ ..+.+|++++.++.......+.... ..++.++..|+.... .
T Consensus 4 ~~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~Dl~~~~~~~~~~~~~ 75 (238)
T PRK05786 4 KGKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSK-------YGNIHYVVGDVSSTESARNVIEKA 75 (238)
T ss_pred CCcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-------cCCeEEEECCCCCHHHHHHHHHHH
Confidence 35688888875 45555554443 2345899999888766555443332 125777888866321 0
Q ss_pred --CCCCeeEEEECCCccc-----------------------hhHHHHHhcCCCcEEEEEec
Q psy10572 121 --REAPYDIIHVSPSYFT-----------------------IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 121 --~~~~~D~v~~~~~~~~-----------------------~~~~~~~~Lk~gG~l~~~~~ 156 (204)
..+.+|.++.+..... +.+.+...++++|.+++...
T Consensus 76 ~~~~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss 136 (238)
T PRK05786 76 AKVLNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSS 136 (238)
T ss_pred HHHhCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEec
Confidence 0135788877664311 23455566778887776543
|
|
| >PLN02702 L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=90.39 E-value=4.3 Score=32.86 Aligned_cols=97 Identities=18% Similarity=0.197 Sum_probs=60.5
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEE---EecCCCC---C-
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV---VWNGKHG---Y- 119 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~~d~~~~---~- 119 (204)
+.++.+|+-.|+|. |..+..+++..+ ...+++++.++...+.++..-. +.+... ..+.... .
T Consensus 179 ~~~g~~vlI~g~g~vG~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~~g~---------~~~~~~~~~~~~~~~~~~~~~ 248 (364)
T PLN02702 179 IGPETNVLVMGAGPIGLVTMLAARAFG-APRIVIVDVDDERLSVAKQLGA---------DEIVLVSTNIEDVESEVEEIQ 248 (364)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHhCC---------CEEEecCcccccHHHHHHHHh
Confidence 56778888888764 667777777753 2358888988877776654311 111111 0111100 0
Q ss_pred -CCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 120 -EREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 120 -~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
.....+|+|+.............+.|+++|+++..
T Consensus 249 ~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~ 284 (364)
T PLN02702 249 KAMGGGIDVSFDCVGFNKTMSTALEATRAGGKVCLV 284 (364)
T ss_pred hhcCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence 11246899988766556778999999999998653
|
|
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.30 E-value=1.2 Score=35.52 Aligned_cols=91 Identities=18% Similarity=0.172 Sum_probs=59.2
Q ss_pred CEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEEE
Q psy10572 52 ARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHV 130 (204)
Q Consensus 52 ~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 130 (204)
.+|.-+|.|. |.-+..++--+ +++|+-+|+|...+......+. .+++....+.......-...|++|.
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~gl--gA~Vtild~n~~rl~~ldd~f~---------~rv~~~~st~~~iee~v~~aDlvIg 237 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGL--GADVTILDLNIDRLRQLDDLFG---------GRVHTLYSTPSNIEEAVKKADLVIG 237 (371)
T ss_pred ccEEEECCccccchHHHHHhcc--CCeeEEEecCHHHHhhhhHhhC---------ceeEEEEcCHHHHHHHhhhccEEEE
Confidence 4677788886 77777666654 4699999999988877766543 2455555442211111145888865
Q ss_pred CCCc-----cc-hhHHHHHhcCCCcEEEE
Q psy10572 131 SPSY-----FT-IPQKLLDQLVPGGRMVM 153 (204)
Q Consensus 131 ~~~~-----~~-~~~~~~~~Lk~gG~l~~ 153 (204)
.-.. +. +.++..+.+|||+.++=
T Consensus 238 aVLIpgakaPkLvt~e~vk~MkpGsVivD 266 (371)
T COG0686 238 AVLIPGAKAPKLVTREMVKQMKPGSVIVD 266 (371)
T ss_pred EEEecCCCCceehhHHHHHhcCCCcEEEE
Confidence 4222 22 45888999999998864
|
|
| >cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases | Back alignment and domain information |
|---|
Probab=89.85 E-value=1.6 Score=34.92 Aligned_cols=95 Identities=18% Similarity=0.175 Sum_probs=60.0
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCce-EEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecC--C---CCCC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGR-VYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNG--K---HGYE 120 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~--~---~~~~ 120 (204)
+.++.+||..|+|. |..+..+++..+ .. +++++.++...+.++..- . ..++...- . ....
T Consensus 157 ~~~~~~vlI~g~g~~g~~~~~lA~~~G--~~~v~~~~~~~~~~~~l~~~g-~----------~~~~~~~~~~~~~~~~~~ 223 (343)
T cd08236 157 ITLGDTVVVIGAGTIGLLAIQWLKILG--AKRVIAVDIDDEKLAVARELG-A----------DDTINPKEEDVEKVRELT 223 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CCEEEEEcCCHHHHHHHHHcC-C----------CEEecCccccHHHHHHHh
Confidence 56788999998765 667777777653 34 888888877666654321 0 11111110 0 0112
Q ss_pred CCCCeeEEEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 121 REAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 121 ~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
+...+|+++...........+.+.|+++|.++..-
T Consensus 224 ~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 224 EGRGADLVIEAAGSPATIEQALALARPGGKVVLVG 258 (343)
T ss_pred CCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEc
Confidence 22459999877555567788899999999987643
|
This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast |
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.69 E-value=7.2 Score=30.27 Aligned_cols=74 Identities=15% Similarity=0.086 Sum_probs=46.8
Q ss_pred EEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC---------CCCC
Q psy10572 53 RILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY---------EREA 123 (204)
Q Consensus 53 ~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~---------~~~~ 123 (204)
.+|--|+ |.++..+++.+..+.+|+.++.++..++.....+... ..++.++..|+.+.. ...+
T Consensus 4 ~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~------~~~~~~~~~Dv~d~~~i~~~~~~~~~~g 75 (275)
T PRK06940 4 VVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREA------GFDVSTQEVDVSSRESVKALAATAQTLG 75 (275)
T ss_pred EEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhc------CCeEEEEEeecCCHHHHHHHHHHHHhcC
Confidence 4555554 4677778777755568999998877665554444321 135677778865321 1125
Q ss_pred CeeEEEECCCc
Q psy10572 124 PYDIIHVSPSY 134 (204)
Q Consensus 124 ~~D~v~~~~~~ 134 (204)
.+|+++.+++.
T Consensus 76 ~id~li~nAG~ 86 (275)
T PRK06940 76 PVTGLVHTAGV 86 (275)
T ss_pred CCCEEEECCCc
Confidence 69999988765
|
|
| >KOG2912|consensus | Back alignment and domain information |
|---|
Probab=89.65 E-value=1.8 Score=34.61 Aligned_cols=77 Identities=19% Similarity=0.237 Sum_probs=50.3
Q ss_pred EEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC-------CCCCCee
Q psy10572 54 ILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-------EREAPYD 126 (204)
Q Consensus 54 vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-------~~~~~~D 126 (204)
-+|||+|...+--.+.... .+...+++|++......|..++..+. ..+.+.+++....... .++..||
T Consensus 106 GiDIgtgasci~~llg~rq-~n~~f~~teidd~s~~~a~snV~qn~----lss~ikvV~~~~~ktll~d~~~~~~e~~yd 180 (419)
T KOG2912|consen 106 GIDIGTGASCIYPLLGARQ-NNWYFLATEIDDMSFNYAKSNVEQNN----LSSLIKVVKVEPQKTLLMDALKEESEIIYD 180 (419)
T ss_pred eeeccCchhhhHHhhhchh-ccceeeeeeccccccchhhccccccc----cccceeeEEecchhhcchhhhccCccceee
Confidence 4788888654433332222 23477899999999999999988754 2456777766433211 2234699
Q ss_pred EEEECCCcc
Q psy10572 127 IIHVSPSYF 135 (204)
Q Consensus 127 ~v~~~~~~~ 135 (204)
.+.||+++.
T Consensus 181 FcMcNPPFf 189 (419)
T KOG2912|consen 181 FCMCNPPFF 189 (419)
T ss_pred EEecCCchh
Confidence 999998874
|
|
| >cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=89.60 E-value=4.9 Score=32.14 Aligned_cols=95 Identities=22% Similarity=0.212 Sum_probs=59.3
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEE-EEecCCCCCCCCCCe
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQF-VVWNGKHGYEREAPY 125 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~ 125 (204)
+.++.+|+-.|+|. |..+..+++..+ .+++.++.++...+.++..- . ..+-. ...+.... . ...+
T Consensus 167 ~~~g~~vlV~g~g~vG~~~~~~a~~~G--~~v~~~~~~~~~~~~~~~~g-~--------~~vi~~~~~~~~~~-~-~~~~ 233 (337)
T cd05283 167 VGPGKRVGVVGIGGLGHLAVKFAKALG--AEVTAFSRSPSKKEDALKLG-A--------DEFIATKDPEAMKK-A-AGSL 233 (337)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHHcC-C--------cEEecCcchhhhhh-c-cCCc
Confidence 46777887788764 666666677653 58999998888777764321 1 11100 00010011 1 2569
Q ss_pred eEEEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 126 DIIHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 126 D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
|+++...........+.+.|+++|.++..-
T Consensus 234 d~v~~~~g~~~~~~~~~~~l~~~G~~v~~g 263 (337)
T cd05283 234 DLIIDTVSASHDLDPYLSLLKPGGTLVLVG 263 (337)
T ss_pred eEEEECCCCcchHHHHHHHhcCCCEEEEEe
Confidence 999876665545788899999999988643
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic |
| >cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2 | Back alignment and domain information |
|---|
Probab=89.52 E-value=7 Score=31.19 Aligned_cols=95 Identities=20% Similarity=0.270 Sum_probs=58.3
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCC------CCCC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGK------HGYE 120 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~------~~~~ 120 (204)
+.++.+||-.|+|. |..+..+++..+ ..++++++.++.....+++. .. ..+..+-. ....
T Consensus 165 ~~~~~~vlI~g~g~vg~~~~~~a~~~g-~~~v~~~~~~~~~~~~~~~~-g~-----------~~~~~~~~~~~~~l~~~~ 231 (344)
T cd08284 165 VRPGDTVAVIGCGPVGLCAVLSAQVLG-AARVFAVDPVPERLERAAAL-GA-----------EPINFEDAEPVERVREAT 231 (344)
T ss_pred CccCCEEEEECCcHHHHHHHHHHHHcC-CceEEEEcCCHHHHHHHHHh-CC-----------eEEecCCcCHHHHHHHHh
Confidence 46778888887664 556666677653 12788888777665555431 10 11111100 0012
Q ss_pred CCCCeeEEEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 121 REAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 121 ~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
+...+|+++.............+.|+++|.++..-
T Consensus 232 ~~~~~dvvid~~~~~~~~~~~~~~l~~~g~~v~~g 266 (344)
T cd08284 232 EGRGADVVLEAVGGAAALDLAFDLVRPGGVISSVG 266 (344)
T ss_pred CCCCCCEEEECCCCHHHHHHHHHhcccCCEEEEEC
Confidence 23469999876665567788899999999987643
|
Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical |
| >PF05575 V_cholerae_RfbT: Vibrio cholerae RfbT protein; InterPro: IPR008890 This family consists of several RfbT proteins from Vibrio cholerae | Back alignment and domain information |
|---|
Probab=89.41 E-value=0.84 Score=32.89 Aligned_cols=58 Identities=21% Similarity=0.331 Sum_probs=45.7
Q ss_pred HHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhh
Q psy10572 39 QMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97 (204)
Q Consensus 39 ~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~ 97 (204)
-|..++..+-+.+...+|+|+..|.+.-..+++. .+++++++|+-.+|-...+.+...
T Consensus 68 gmrhwivnhckhdttyidiganvgtfcgiaarhi-tqgkiiaiepltemensirmnvql 125 (286)
T PF05575_consen 68 GMRHWIVNHCKHDTTYIDIGANVGTFCGIAARHI-TQGKIIAIEPLTEMENSIRMNVQL 125 (286)
T ss_pred chhHhhhhhccCCceEEEeccccccchhhhhhhc-ccCceEEEechhhhhhheeeeeee
Confidence 3555555556778899999999999998888888 678999999888877766666544
|
It has been found that genetic alteration of the rfbT gene is responsible for serotype conversion of V. cholerae O1 [] and determines the difference between the Ogawa and Inaba serotypes, in that the presence of rfbT is sufficient for Inaba-to-Ogawa serotype conversion []. |
| >KOG2782|consensus | Back alignment and domain information |
|---|
Probab=89.35 E-value=0.45 Score=35.78 Aligned_cols=58 Identities=16% Similarity=0.176 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHh
Q psy10572 35 HIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNI 95 (204)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~ 95 (204)
-+....++.+. ..++...+|..-|.|..+..+.+.. ++.++++.|.+|.+-+.|+...
T Consensus 30 Vm~devl~~ls--pv~g~sf~DmTfGagGHt~~ilqk~-se~k~yalDrDP~A~~La~~~s 87 (303)
T KOG2782|consen 30 VMLDEVLDILS--PVRGRSFVDMTFGAGGHTSSILQKH-SELKNYALDRDPVARKLAHFHS 87 (303)
T ss_pred eehhhHHHHcC--CCCCceEEEEeccCCcchHHHHHhC-cHhhhhhhccChHHHHHHHHhh
Confidence 35667777777 6788999999999999999998887 7789999999999888887665
|
|
| >COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.29 E-value=5 Score=30.95 Aligned_cols=89 Identities=18% Similarity=0.169 Sum_probs=67.4
Q ss_pred HHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecC
Q psy10572 36 IHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNG 115 (204)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~ 115 (204)
.....++.+.. ++++.. |..-||+-.++..+.+.-. ++..+|+.|+-....+.++.. ..++++.++|.
T Consensus 76 ~l~~yl~~i~~-lN~~~~-l~~YpGSP~lA~~llR~qD---Rl~l~ELHp~D~~~L~~~f~~-------d~~vrv~~~DG 143 (279)
T COG2961 76 ELEPYLDAVRQ-LNPGGG-LRYYPGSPLLARQLLREQD---RLVLTELHPSDAPLLRNNFAG-------DRRVRVLRGDG 143 (279)
T ss_pred HHHHHHHHHHH-hCCCCC-cccCCCCHHHHHHHcchhc---eeeeeecCccHHHHHHHHhCC-------CcceEEEecCc
Confidence 34444444442 566666 8899999999888888543 899999999999999998875 45899999997
Q ss_pred CC----CCCCCCCeeEEEECCCccc
Q psy10572 116 KH----GYEREAPYDIIHVSPSYFT 136 (204)
Q Consensus 116 ~~----~~~~~~~~D~v~~~~~~~~ 136 (204)
.. ..++.+.--+|++++++..
T Consensus 144 ~~~l~a~LPP~erRglVLIDPPfE~ 168 (279)
T COG2961 144 FLALKAHLPPKERRGLVLIDPPFEL 168 (279)
T ss_pred HHHHhhhCCCCCcceEEEeCCCccc
Confidence 63 3355567889999999854
|
|
| >TIGR00692 tdh L-threonine 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=89.21 E-value=8.2 Score=30.86 Aligned_cols=97 Identities=18% Similarity=0.118 Sum_probs=57.7
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCce-EEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCC---CCCCC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGR-VYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKH---GYERE 122 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~---~~~~~ 122 (204)
..++.+|+-.|+|. |..+..+++..+ .+ +++++.++...+.++..-.. .-+.....+... ...+.
T Consensus 159 ~~~g~~vlI~~~g~vg~~a~~la~~~G--~~~v~~~~~~~~~~~~~~~~g~~--------~~v~~~~~~~~~~l~~~~~~ 228 (340)
T TIGR00692 159 PISGKSVLVTGAGPIGLMAIAVAKASG--AYPVIVSDPNEYRLELAKKMGAT--------YVVNPFKEDVVKEVADLTDG 228 (340)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHHhCCc--------EEEcccccCHHHHHHHhcCC
Confidence 45777888777653 666666777653 44 88887777666665442110 000111111110 11223
Q ss_pred CCeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 123 APYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 123 ~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
..+|+++...........+.+.|+++|.++..
T Consensus 229 ~~~d~vld~~g~~~~~~~~~~~l~~~g~~v~~ 260 (340)
T TIGR00692 229 EGVDVFLEMSGAPKALEQGLQAVTPGGRVSLL 260 (340)
T ss_pred CCCCEEEECCCCHHHHHHHHHhhcCCCEEEEE
Confidence 56999988755556678889999999998764
|
E. coli His-90 modulates substrate specificity and is believed part of the active site. |
| >cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase | Back alignment and domain information |
|---|
Probab=89.15 E-value=6.5 Score=31.55 Aligned_cols=93 Identities=16% Similarity=0.136 Sum_probs=59.6
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCC------CCCCC
Q psy10572 49 KPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGK------HGYER 121 (204)
Q Consensus 49 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~------~~~~~ 121 (204)
.++.+||-.|+|. |..+..+++..+ ...++.++.++...+.+.+. .. ..++...-. .....
T Consensus 174 ~~~~~vlI~g~g~vg~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~~-g~----------~~~~~~~~~~~~~~~~~~~~ 241 (350)
T cd08240 174 VADEPVVIIGAGGLGLMALALLKALG-PANIIVVDIDEAKLEAAKAA-GA----------DVVVNGSDPDAAKRIIKAAG 241 (350)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHh-CC----------cEEecCCCccHHHHHHHHhC
Confidence 4677888888775 777777777753 22788888888777776432 11 011111100 00112
Q ss_pred CCCeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 122 EAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 122 ~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
+.+|+++...+.......+.+.|+++|+++..
T Consensus 242 -~~~d~vid~~g~~~~~~~~~~~l~~~g~~v~~ 273 (350)
T cd08240 242 -GGVDAVIDFVNNSATASLAFDILAKGGKLVLV 273 (350)
T ss_pred -CCCcEEEECCCCHHHHHHHHHHhhcCCeEEEE
Confidence 26999997666556788999999999999863
|
6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy |
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=89.11 E-value=0.74 Score=33.52 Aligned_cols=90 Identities=23% Similarity=0.241 Sum_probs=53.1
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 49 KPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 49 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
-.+.+|.-+|+|. |......++.++ ++|+++|.+......+... .+.+ .++.+ .. ...|+
T Consensus 34 l~g~tvgIiG~G~IG~~vA~~l~~fG--~~V~~~d~~~~~~~~~~~~------------~~~~--~~l~e-ll--~~aDi 94 (178)
T PF02826_consen 34 LRGKTVGIIGYGRIGRAVARRLKAFG--MRVIGYDRSPKPEEGADEF------------GVEY--VSLDE-LL--AQADI 94 (178)
T ss_dssp STTSEEEEESTSHHHHHHHHHHHHTT---EEEEEESSCHHHHHHHHT------------TEEE--SSHHH-HH--HH-SE
T ss_pred cCCCEEEEEEEcCCcCeEeeeeecCC--ceeEEecccCChhhhcccc------------ccee--eehhh-hc--chhhh
Confidence 3578999999986 776666666654 6999999988765522111 1211 12111 11 34788
Q ss_pred EEECCCccc-----hhHHHHHhcCCCcEEEEEecCC
Q psy10572 128 IHVSPSYFT-----IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 128 v~~~~~~~~-----~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
|+...+... +-++....+|+|.+|+= +.-+
T Consensus 95 v~~~~plt~~T~~li~~~~l~~mk~ga~lvN-~aRG 129 (178)
T PF02826_consen 95 VSLHLPLTPETRGLINAEFLAKMKPGAVLVN-VARG 129 (178)
T ss_dssp EEE-SSSSTTTTTSBSHHHHHTSTTTEEEEE-SSSG
T ss_pred hhhhhccccccceeeeeeeeeccccceEEEe-ccch
Confidence 877766422 34788888988776554 4433
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >COG4017 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=89.03 E-value=4.1 Score=30.17 Aligned_cols=89 Identities=16% Similarity=0.044 Sum_probs=59.4
Q ss_pred CCCCEEEEEcCC-CcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 49 KPGARILDIGSG-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 49 ~~~~~vLdiG~G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
.....+|-+|.- +|.....+.. ..++|+.+|+.|.+-... .+++.|... ..+..+.+|+
T Consensus 43 ~E~~~vli~G~YltG~~~a~~Ls---~~~~vtv~Di~p~~r~~l-------------p~~v~Fr~~----~~~~~G~~Dl 102 (254)
T COG4017 43 EEFKEVLIFGVYLTGNYTAQMLS---KADKVTVVDIHPFMRGFL-------------PNNVKFRNL----LKFIRGEVDL 102 (254)
T ss_pred cCcceEEEEEeeehhHHHHHHhc---ccceEEEecCCHHHHhcC-------------CCCccHhhh----cCCCCCceeE
Confidence 456789999987 4666554444 356999999999864443 235555554 2234577999
Q ss_pred EEECCCccchhHHHHHhcCCCcEEEEEecCC
Q psy10572 128 IHVSPSYFTIPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 128 v~~~~~~~~~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
|+-..++...--+.++-+.|+- +++.-+.+
T Consensus 103 ivDlTGlGG~~Pe~L~~fnp~v-fiVEdP~g 132 (254)
T COG4017 103 IVDLTGLGGIEPEFLAKFNPKV-FIVEDPKG 132 (254)
T ss_pred EEeccccCCCCHHHHhccCCce-EEEECCCC
Confidence 9988888777777777777764 44444444
|
|
| >cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=88.86 E-value=6.8 Score=31.76 Aligned_cols=95 Identities=20% Similarity=0.184 Sum_probs=58.6
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCce-EEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe---cCC---CCC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGR-VYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW---NGK---HGY 119 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---d~~---~~~ 119 (204)
+.++.+||-.|+|. |..+..+++..+ .. +++++.++...+.++.. .. ..++.. +.. ...
T Consensus 185 ~~~g~~VlI~g~g~vG~~~~~lak~~G--~~~vi~~~~s~~~~~~~~~~-g~----------~~v~~~~~~~~~~~l~~~ 251 (367)
T cd08263 185 VRPGETVAVIGVGGVGSSAIQLAKAFG--ASPIIAVDVRDEKLAKAKEL-GA----------THTVNAAKEDAVAAIREI 251 (367)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC--CCeEEEEeCCHHHHHHHHHh-CC----------ceEecCCcccHHHHHHHH
Confidence 36777888777663 666666777653 35 88898888777766432 11 111111 110 011
Q ss_pred CCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 120 EREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 120 ~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
.+...+|+|+....-......+.+.|+++|.++...
T Consensus 252 ~~~~~~d~vld~vg~~~~~~~~~~~l~~~G~~v~~g 287 (367)
T cd08263 252 TGGRGVDVVVEALGKPETFKLALDVVRDGGRAVVVG 287 (367)
T ss_pred hCCCCCCEEEEeCCCHHHHHHHHHHHhcCCEEEEEc
Confidence 223569999876554336788899999999988753
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu |
| >PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional | Back alignment and domain information |
|---|
Probab=88.78 E-value=2.4 Score=33.82 Aligned_cols=96 Identities=20% Similarity=0.142 Sum_probs=60.6
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe----cCCCCC-CC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW----NGKHGY-ER 121 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----d~~~~~-~~ 121 (204)
+.++.+||-.|+|. |..+..+++.. .+.++++++.++...+.+++. .. .. ++.. +..... ..
T Consensus 160 ~~~g~~vlV~g~g~vG~~~~~la~~~-~g~~v~~~~~~~~~~~~~~~~-g~--------~~--v~~~~~~~~~~~~v~~~ 227 (338)
T PRK09422 160 IKPGQWIAIYGAGGLGNLALQYAKNV-FNAKVIAVDINDDKLALAKEV-GA--------DL--TINSKRVEDVAKIIQEK 227 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHh-CCCeEEEEeCChHHHHHHHHc-CC--------cE--EecccccccHHHHHHHh
Confidence 57888999999764 66777777763 235899999999888888542 11 11 1111 100000 00
Q ss_pred CCCeeEEEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 122 EAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 122 ~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
.+.+|.++.........+.+.+.|+++|.++..-
T Consensus 228 ~~~~d~vi~~~~~~~~~~~~~~~l~~~G~~v~~g 261 (338)
T PRK09422 228 TGGAHAAVVTAVAKAAFNQAVDAVRAGGRVVAVG 261 (338)
T ss_pred cCCCcEEEEeCCCHHHHHHHHHhccCCCEEEEEe
Confidence 1247866555555667788999999999988643
|
|
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Probab=88.65 E-value=1.8 Score=28.90 Aligned_cols=93 Identities=16% Similarity=0.087 Sum_probs=58.3
Q ss_pred EEEEEcCCCc-HHHH-HHHHHhCCCceEEE-EEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEE
Q psy10572 53 RILDIGSGSG-YLTA-CLAYMAGPEGRVYG-VEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIH 129 (204)
Q Consensus 53 ~vLdiG~G~G-~~~~-~l~~~~~~~~~v~~-vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 129 (204)
+|.-||+|.. ..-. .+.+. .+..++.+ +|.++...+.+.+.. ++. ...|..+. ......|+|+
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~-~~~~~v~~v~d~~~~~~~~~~~~~-----------~~~-~~~~~~~l-l~~~~~D~V~ 67 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRS-SPDFEVVAVCDPDPERAEAFAEKY-----------GIP-VYTDLEEL-LADEDVDAVI 67 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHT-TTTEEEEEEECSSHHHHHHHHHHT-----------TSE-EESSHHHH-HHHTTESEEE
T ss_pred EEEEECCcHHHHHHHHHHHhc-CCCcEEEEEEeCCHHHHHHHHHHh-----------ccc-chhHHHHH-HHhhcCCEEE
Confidence 5777899863 3222 23333 24557665 599988777664443 222 33332222 2234699999
Q ss_pred ECCCccchhHHHHHhcCCCcEEEEEecCCC
Q psy10572 130 VSPSYFTIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 130 ~~~~~~~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
+..+...-.+.+..+|+-|-.+++.-|-..
T Consensus 68 I~tp~~~h~~~~~~~l~~g~~v~~EKP~~~ 97 (120)
T PF01408_consen 68 IATPPSSHAEIAKKALEAGKHVLVEKPLAL 97 (120)
T ss_dssp EESSGGGHHHHHHHHHHTTSEEEEESSSSS
T ss_pred EecCCcchHHHHHHHHHcCCEEEEEcCCcC
Confidence 888887777888888888888887665544
|
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A .... |
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=88.50 E-value=5 Score=30.01 Aligned_cols=91 Identities=12% Similarity=0.103 Sum_probs=57.5
Q ss_pred CCCEEEEEcCCC-cHH-HHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 50 PGARILDIGSGS-GYL-TACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 50 ~~~~vLdiG~G~-G~~-~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
.+.+||-+|.|. |.- ...+.+ .++.|+.++.... ........ ..++.++..+...... ..+|+
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~---~ga~VtVvsp~~~--~~l~~l~~--------~~~i~~~~~~~~~~dl--~~~~l 72 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLK---AGAQLRVIAEELE--SELTLLAE--------QGGITWLARCFDADIL--EGAFL 72 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHH---CCCEEEEEcCCCC--HHHHHHHH--------cCCEEEEeCCCCHHHh--CCcEE
Confidence 467999999986 333 222333 3458888865443 11111111 1368888877654333 45999
Q ss_pred EEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 128 IHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 128 v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
|++......+-..+....+..|+++-.+
T Consensus 73 Vi~at~d~~ln~~i~~~a~~~~ilvn~~ 100 (205)
T TIGR01470 73 VIAATDDEELNRRVAHAARARGVPVNVV 100 (205)
T ss_pred EEECCCCHHHHHHHHHHHHHcCCEEEEC
Confidence 9998888777788888888888777433
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=88.37 E-value=2 Score=35.24 Aligned_cols=98 Identities=18% Similarity=0.151 Sum_probs=59.6
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccce-EEEEe---cCC---CC
Q psy10572 47 KIKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRV-QFVVW---NGK---HG 118 (204)
Q Consensus 47 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~---d~~---~~ 118 (204)
.+.++.+||-.|+|. |..+..+++..+ ...+++++.++...+.+++.-. +.+ ..... +.. ..
T Consensus 200 ~~~~g~~VlV~g~g~vG~~ai~lA~~~G-~~~vi~~~~~~~~~~~~~~~g~---------~~~v~~~~~~~~~~~~~v~~ 269 (384)
T cd08265 200 GFRPGAYVVVYGAGPIGLAAIALAKAAG-ASKVIAFEISEERRNLAKEMGA---------DYVFNPTKMRDCLSGEKVME 269 (384)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHcCC---------CEEEcccccccccHHHHHHH
Confidence 356788888888765 666677777653 2278999888876666554211 111 00000 110 11
Q ss_pred CCCCCCeeEEEECCCc-cchhHHHHHhcCCCcEEEEE
Q psy10572 119 YEREAPYDIIHVSPSY-FTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 119 ~~~~~~~D~v~~~~~~-~~~~~~~~~~Lk~gG~l~~~ 154 (204)
..+...+|+|+..... ........+.|+++|+++..
T Consensus 270 ~~~g~gvDvvld~~g~~~~~~~~~~~~l~~~G~~v~~ 306 (384)
T cd08265 270 VTKGWGADIQVEAAGAPPATIPQMEKSIAINGKIVYI 306 (384)
T ss_pred hcCCCCCCEEEECCCCcHHHHHHHHHHHHcCCEEEEE
Confidence 1223469999876553 23667888999999999864
|
This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi |
| >KOG1198|consensus | Back alignment and domain information |
|---|
Probab=88.33 E-value=1.5 Score=35.73 Aligned_cols=101 Identities=19% Similarity=0.074 Sum_probs=63.1
Q ss_pred CCCCCEEEEEcCCC--cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCC--CC
Q psy10572 48 IKPGARILDIGSGS--GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYER--EA 123 (204)
Q Consensus 48 ~~~~~~vLdiG~G~--G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~ 123 (204)
..++..||-+|.++ |.+++.+++..+ ...+..-.+.+.++.+++.-++. -+.+...+..+.... ..
T Consensus 155 ~~~g~~vLv~ggsggVG~~aiQlAk~~~--~~~v~t~~s~e~~~l~k~lGAd~--------vvdy~~~~~~e~~kk~~~~ 224 (347)
T KOG1198|consen 155 LSKGKSVLVLGGSGGVGTAAIQLAKHAG--AIKVVTACSKEKLELVKKLGADE--------VVDYKDENVVELIKKYTGK 224 (347)
T ss_pred cCCCCeEEEEeCCcHHHHHHHHHHHhcC--CcEEEEEcccchHHHHHHcCCcE--------eecCCCHHHHHHHHhhcCC
Confidence 56778888888776 567778888763 34555566787888877653321 122222222222111 46
Q ss_pred CeeEEEECCCccchhHHHHHhcCCCcEEEEEecCC
Q psy10572 124 PYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 124 ~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
.||+|+-...-..........++.|+..++.+..+
T Consensus 225 ~~DvVlD~vg~~~~~~~~~~l~~~g~~~~i~~~~~ 259 (347)
T KOG1198|consen 225 GVDVVLDCVGGSTLTKSLSCLLKGGGGAYIGLVGD 259 (347)
T ss_pred CccEEEECCCCCccccchhhhccCCceEEEEeccc
Confidence 79999988777666666667777777666665544
|
|
| >PRK05562 precorrin-2 dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.89 E-value=3.9 Score=31.04 Aligned_cols=94 Identities=12% Similarity=0.116 Sum_probs=59.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEE--EcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCee
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGV--EHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYD 126 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~v--D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D 126 (204)
..+.+||-+|.|.-..-. +...+..+++|+.+ ++++.+.+.+. ..+++++..++..... ..++
T Consensus 23 ~~~~~VLVVGGG~VA~RK-~~~Ll~~gA~VtVVap~i~~el~~l~~------------~~~i~~~~r~~~~~dl--~g~~ 87 (223)
T PRK05562 23 SNKIKVLIIGGGKAAFIK-GKTFLKKGCYVYILSKKFSKEFLDLKK------------YGNLKLIKGNYDKEFI--KDKH 87 (223)
T ss_pred CCCCEEEEECCCHHHHHH-HHHHHhCCCEEEEEcCCCCHHHHHHHh------------CCCEEEEeCCCChHHh--CCCc
Confidence 457799999999744321 22222123455555 67776655432 2468888776554433 3588
Q ss_pred EEEECCCccchhHHHHHhcCCCcEEEEEecC
Q psy10572 127 IIHVSPSYFTIPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 127 ~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
+|++......+-+.+....+.-|.++..+..
T Consensus 88 LViaATdD~~vN~~I~~~a~~~~~lvn~vd~ 118 (223)
T PRK05562 88 LIVIATDDEKLNNKIRKHCDRLYKLYIDCSD 118 (223)
T ss_pred EEEECCCCHHHHHHHHHHHHHcCCeEEEcCC
Confidence 9998888888888888888777776665543
|
|
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=87.86 E-value=4.8 Score=35.88 Aligned_cols=77 Identities=17% Similarity=0.058 Sum_probs=46.6
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHh-CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC-----C---
Q psy10572 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-----E--- 120 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~--- 120 (204)
+++.+|-.|+ +|.++..+++.+ ..+.+|+.+|.++..++.+...+.. ..++.++..|..+.. .
T Consensus 421 ~gk~vLVTGa-sggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~-------~~~v~~v~~Dvtd~~~v~~~~~~~ 492 (681)
T PRK08324 421 AGKVALVTGA-AGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGG-------PDRALGVACDVTDEAAVQAAFEEA 492 (681)
T ss_pred CCCEEEEecC-CCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhc-------cCcEEEEEecCCCHHHHHHHHHHH
Confidence 4567776665 445555554443 1345899999998776665544322 135777788865321 1
Q ss_pred --CCCCeeEEEECCCc
Q psy10572 121 --REAPYDIIHVSPSY 134 (204)
Q Consensus 121 --~~~~~D~v~~~~~~ 134 (204)
..+.+|+|+.+.+.
T Consensus 493 ~~~~g~iDvvI~~AG~ 508 (681)
T PRK08324 493 ALAFGGVDIVVSNAGI 508 (681)
T ss_pred HHHcCCCCEEEECCCC
Confidence 12468999988763
|
|
| >COG1255 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=87.76 E-value=6.5 Score=26.51 Aligned_cols=91 Identities=15% Similarity=0.082 Sum_probs=59.7
Q ss_pred CCCCEEEEEcCCCc-HHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCC-CCCee
Q psy10572 49 KPGARILDIGSGSG-YLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYER-EAPYD 126 (204)
Q Consensus 49 ~~~~~vLdiG~G~G-~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D 126 (204)
.++ +|+|+|-|.= ..+..++++ ++.++++|+++. .+ ...+.+...|......+ -...|
T Consensus 13 ~~g-kVvEVGiG~~~~VA~~L~e~---g~dv~atDI~~~---~a-------------~~g~~~v~DDitnP~~~iY~~A~ 72 (129)
T COG1255 13 ARG-KVVEVGIGFFLDVAKRLAER---GFDVLATDINEK---TA-------------PEGLRFVVDDITNPNISIYEGAD 72 (129)
T ss_pred cCC-cEEEEccchHHHHHHHHHHc---CCcEEEEecccc---cC-------------cccceEEEccCCCccHHHhhCcc
Confidence 444 9999999863 334445553 358999999886 11 13577888887654432 24689
Q ss_pred EEEECCCccchhHHHHHhc-CCCcEEEEEecCCC
Q psy10572 127 IIHVSPSYFTIPQKLLDQL-VPGGRMVMPVGEPF 159 (204)
Q Consensus 127 ~v~~~~~~~~~~~~~~~~L-k~gG~l~~~~~~~~ 159 (204)
+|++--+.+++...+.++- +.|..+++.-..+.
T Consensus 73 lIYSiRpppEl~~~ildva~aVga~l~I~pL~Ge 106 (129)
T COG1255 73 LIYSIRPPPELQSAILDVAKAVGAPLYIKPLTGE 106 (129)
T ss_pred ceeecCCCHHHHHHHHHHHHhhCCCEEEEecCCC
Confidence 9999888888776666554 34555666554443
|
|
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=87.73 E-value=2 Score=35.42 Aligned_cols=47 Identities=21% Similarity=0.163 Sum_probs=36.5
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhh
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~ 97 (204)
+.++.+||-|++|.......+... | .+|++||.||..+...+-+.+.
T Consensus 33 i~~~d~vl~ItSaG~N~L~yL~~~--P-~~I~aVDlNp~Q~aLleLKlAa 79 (380)
T PF11899_consen 33 IGPDDRVLTITSAGCNALDYLLAG--P-KRIHAVDLNPAQNALLELKLAA 79 (380)
T ss_pred CCCCCeEEEEccCCchHHHHHhcC--C-ceEEEEeCCHHHHHHHHHHHHH
Confidence 789999999988876665555553 2 4999999999988777766554
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >PRK05396 tdh L-threonine 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=87.67 E-value=2.2 Score=34.13 Aligned_cols=97 Identities=20% Similarity=0.159 Sum_probs=58.9
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccce-EEEEecCC---CCCCCCC
Q psy10572 49 KPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRV-QFVVWNGK---HGYEREA 123 (204)
Q Consensus 49 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~d~~---~~~~~~~ 123 (204)
.++.+|+-.|+|. |..+..+++..+ ..++++++.++...+.++..-. ..+ .....+.. .......
T Consensus 162 ~~g~~vlV~~~g~vg~~~~~la~~~G-~~~v~~~~~~~~~~~~~~~lg~---------~~~~~~~~~~~~~~~~~~~~~~ 231 (341)
T PRK05396 162 LVGEDVLITGAGPIGIMAAAVAKHVG-ARHVVITDVNEYRLELARKMGA---------TRAVNVAKEDLRDVMAELGMTE 231 (341)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHhCC---------cEEecCccccHHHHHHHhcCCC
Confidence 4677888777765 666777777653 2257788877776665544211 110 00011110 1112234
Q ss_pred CeeEEEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 124 PYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 124 ~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
.+|+|+...+.......+.+.|+++|.++..-
T Consensus 232 ~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g 263 (341)
T PRK05396 232 GFDVGLEMSGAPSAFRQMLDNMNHGGRIAMLG 263 (341)
T ss_pred CCCEEEECCCCHHHHHHHHHHHhcCCEEEEEe
Confidence 68999886665567788899999999998754
|
|
| >KOG3350|consensus | Back alignment and domain information |
|---|
Probab=87.45 E-value=9.3 Score=27.94 Aligned_cols=123 Identities=15% Similarity=0.156 Sum_probs=77.3
Q ss_pred ccCCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccC
Q psy10572 25 IGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLD 104 (204)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~ 104 (204)
+..++++..++....+++........+.+|-.+.|-+=++-...-...-+.-+|+-+|.+... ...
T Consensus 48 wQlsqfwy~~eta~~La~e~v~~s~e~~rIacvS~Psly~y~k~re~~~~~~~v~lfEfDkRF--------e~y------ 113 (217)
T KOG3350|consen 48 WQLSQFWYSDETARKLAAERVEASGEGSRIACVSCPSLYVYQKKREIEIPHDQVYLFEFDKRF--------ELY------ 113 (217)
T ss_pred hhhhhhhcCHHHHHHHHHHHHhhcccCceEEEEeCchHHhhhhhhhccCCceeEEEEEehhhH--------Hhc------
Confidence 445677778888888877776556677788888887755211111111134588888876543 221
Q ss_pred ccceEEEEecCCCCC-CC---CCCeeEEEECCCccch------hHHHHHhcCCCcEEEEEecCCCCcce
Q psy10572 105 QGRVQFVVWNGKHGY-ER---EAPYDIIHVSPSYFTI------PQKLLDQLVPGGRMVMPVGEPFKGQN 163 (204)
Q Consensus 105 ~~~~~~~~~d~~~~~-~~---~~~~D~v~~~~~~~~~------~~~~~~~Lk~gG~l~~~~~~~~~~~~ 163 (204)
.-+|+.-|..... .| .+.||+|++++++-.- ...+..+.+++-.++++++.--.++.
T Consensus 114 --g~eFvfYDyN~p~dlp~~lk~~fdiivaDPPfL~~eCl~Kts~tik~L~r~~~kvilCtGeimee~~ 180 (217)
T KOG3350|consen 114 --GTEFVFYDYNCPLDLPDELKAHFDIIVADPPFLSEECLAKTSETIKRLQRNQKKVILCTGEIMEEWA 180 (217)
T ss_pred --cceeEEeccCCCCCCHHHHHhcccEEEeCCccccchhhhhhHHHHHHHhcCCceEEEechhHhHHHH
Confidence 2456666644221 22 2569999999998542 25666778888899887776544433
|
|
| >cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=87.30 E-value=2.6 Score=34.16 Aligned_cols=96 Identities=21% Similarity=0.205 Sum_probs=60.1
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe---cCC---CCCC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW---NGK---HGYE 120 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---d~~---~~~~ 120 (204)
+.++.+||-.|+|. |..+..+++..+ ...+++++.++...+.++.. .. ..++.. +.. ....
T Consensus 180 ~~~g~~vLI~g~g~vG~a~i~lak~~G-~~~Vi~~~~~~~~~~~~~~~-g~----------~~vv~~~~~~~~~~l~~~~ 247 (363)
T cd08279 180 VRPGDTVAVIGCGGVGLNAIQGARIAG-ASRIIAVDPVPEKLELARRF-GA----------THTVNASEDDAVEAVRDLT 247 (363)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCcEEEEcCCHHHHHHHHHh-CC----------eEEeCCCCccHHHHHHHHc
Confidence 56778888888764 667777777653 22488888888776666432 11 111111 110 0112
Q ss_pred CCCCeeEEEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 121 REAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 121 ~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
+...+|+++...........+.+.|+++|+++..-
T Consensus 248 ~~~~vd~vld~~~~~~~~~~~~~~l~~~G~~v~~g 282 (363)
T cd08279 248 DGRGADYAFEAVGRAATIRQALAMTRKGGTAVVVG 282 (363)
T ss_pred CCCCCCEEEEcCCChHHHHHHHHHhhcCCeEEEEe
Confidence 23569999876654566788899999999987643
|
Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me |
| >PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown | Back alignment and domain information |
|---|
Probab=87.23 E-value=6.5 Score=26.97 Aligned_cols=92 Identities=14% Similarity=0.042 Sum_probs=48.9
Q ss_pred CCCCEEEEEcCCCcH-HHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCC-CCCee
Q psy10572 49 KPGARILDIGSGSGY-LTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYER-EAPYD 126 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~-~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D 126 (204)
....+|+|+|-|.=. .+..|.++. ..++++|+.+. .+ ...+.++..|+.....+ -...|
T Consensus 12 ~~~~kiVEVGiG~~~~vA~~L~~~G---~dV~~tDi~~~---~a-------------~~g~~~v~DDif~P~l~iY~~a~ 72 (127)
T PF03686_consen 12 NNYGKIVEVGIGFNPEVAKKLKERG---FDVIATDINPR---KA-------------PEGVNFVVDDIFNPNLEIYEGAD 72 (127)
T ss_dssp S-SSEEEEET-TT--HHHHHHHHHS----EEEEE-SS-S--------------------STTEE---SSS--HHHHTTEE
T ss_pred CCCCcEEEECcCCCHHHHHHHHHcC---CcEEEEECccc---cc-------------ccCcceeeecccCCCHHHhcCCc
Confidence 345599999999744 445555542 59999999987 11 12567788887654322 14699
Q ss_pred EEEECCCccchhHHHHHhc-CCCcEEEEEecCCC
Q psy10572 127 IIHVSPSYFTIPQKLLDQL-VPGGRMVMPVGEPF 159 (204)
Q Consensus 127 ~v~~~~~~~~~~~~~~~~L-k~gG~l~~~~~~~~ 159 (204)
+|++--+..++...+.++- +-|.-+++...++.
T Consensus 73 lIYSiRPP~El~~~il~lA~~v~adlii~pL~~e 106 (127)
T PF03686_consen 73 LIYSIRPPPELQPPILELAKKVGADLIIRPLGGE 106 (127)
T ss_dssp EEEEES--TTSHHHHHHHHHHHT-EEEEE-BTTB
T ss_pred EEEEeCCChHHhHHHHHHHHHhCCCEEEECCCCC
Confidence 9999887777665555443 34666777665554
|
; PDB: 2K4M_A. |
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=86.90 E-value=4.1 Score=35.76 Aligned_cols=94 Identities=10% Similarity=0.029 Sum_probs=60.3
Q ss_pred CEEEEEcCCCcHHHHHHHHHhC-CCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC----CCCCCee
Q psy10572 52 ARILDIGSGSGYLTACLAYMAG-PEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY----EREAPYD 126 (204)
Q Consensus 52 ~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D 126 (204)
.+|+-+|+|. .+..+++.+. .+.+++.+|.++..++.+++. ...++.+|..+.. ..-.+.|
T Consensus 401 ~~vII~G~Gr--~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~------------g~~v~~GDat~~~~L~~agi~~A~ 466 (601)
T PRK03659 401 PQVIIVGFGR--FGQVIGRLLMANKMRITVLERDISAVNLMRKY------------GYKVYYGDATQLELLRAAGAEKAE 466 (601)
T ss_pred CCEEEecCch--HHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC------------CCeEEEeeCCCHHHHHhcCCccCC
Confidence 4677676664 4444444331 234899999999998888642 4678899977432 1224677
Q ss_pred EEEECCCccchh---HHHHHhcCCCcEEEEEecCCC
Q psy10572 127 IIHVSPSYFTIP---QKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 127 ~v~~~~~~~~~~---~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
.+++........ -...+.+.|+..+++...+..
T Consensus 467 ~vv~~~~d~~~n~~i~~~~r~~~p~~~IiaRa~~~~ 502 (601)
T PRK03659 467 AIVITCNEPEDTMKIVELCQQHFPHLHILARARGRV 502 (601)
T ss_pred EEEEEeCCHHHHHHHHHHHHHHCCCCeEEEEeCCHH
Confidence 777665554422 344566788988888776654
|
|
| >COG0863 DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=86.72 E-value=3.9 Score=32.08 Aligned_cols=55 Identities=27% Similarity=0.383 Sum_probs=44.8
Q ss_pred HHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhh
Q psy10572 40 MLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97 (204)
Q Consensus 40 ~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~ 97 (204)
+...+.....++..|||.-+|+|..+........ ..+|+|+++..++.+..++..
T Consensus 212 ~~r~i~~~s~~~diVlDpf~GsGtt~~aa~~~~r---~~ig~e~~~~y~~~~~~r~~~ 266 (302)
T COG0863 212 IERLIRDYSFPGDIVLDPFAGSGTTGIAAKNLGR---RFIGIEINPEYVEVALKRLQE 266 (302)
T ss_pred HHHHHHhcCCCCCEEeecCCCCChHHHHHHHcCC---ceEEEecCHHHHHHHHHHHHh
Confidence 3333333368899999999999999887777553 899999999999999999876
|
|
| >KOG0821|consensus | Back alignment and domain information |
|---|
Probab=86.56 E-value=2.3 Score=32.26 Aligned_cols=59 Identities=17% Similarity=0.192 Sum_probs=42.1
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCC
Q psy10572 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGK 116 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~ 116 (204)
.+.-|++||.|+|+.+..+.... ..+...+|.++..+.-.+...++. ..++.+.++|+.
T Consensus 50 ~~~~v~eIgPgpggitR~il~a~--~~RL~vVE~D~RFip~LQ~L~EAa------~~~~~IHh~D~L 108 (326)
T KOG0821|consen 50 TNAYVYEIGPGPGGITRSILNAD--VARLLVVEKDTRFIPGLQMLSEAA------PGKLRIHHGDVL 108 (326)
T ss_pred ccceeEEecCCCCchhHHHHhcc--hhheeeeeeccccChHHHHHhhcC------CcceEEeccccc
Confidence 45689999999999999998764 237888898888776665554432 235666666654
|
|
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=86.46 E-value=8.5 Score=34.00 Aligned_cols=94 Identities=12% Similarity=0.087 Sum_probs=59.3
Q ss_pred CCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC----CCCCCe
Q psy10572 51 GARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY----EREAPY 125 (204)
Q Consensus 51 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~ 125 (204)
..+|+-+|||. |......... .+..++.+|.++..++.+++. ...++.+|..+.. ..-+..
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~--~g~~vvvID~d~~~v~~~~~~------------g~~v~~GDat~~~~L~~agi~~A 465 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLS--SGVKMTVLDHDPDHIETLRKF------------GMKVFYGDATRMDLLESAGAAKA 465 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHh--CCCCEEEEECCHHHHHHHHhc------------CCeEEEEeCCCHHHHHhcCCCcC
Confidence 35788888885 5544333332 234899999999999888652 4678899977432 122467
Q ss_pred eEEEECCCccch---hHHHHHhcCCCcEEEEEecCC
Q psy10572 126 DIIHVSPSYFTI---PQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 126 D~v~~~~~~~~~---~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
|.+++....... .-...+.+.|+-.+++...+.
T Consensus 466 ~~vvv~~~d~~~n~~i~~~ar~~~p~~~iiaRa~d~ 501 (621)
T PRK03562 466 EVLINAIDDPQTSLQLVELVKEHFPHLQIIARARDV 501 (621)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEEECCH
Confidence 777766555432 234445567777777655444
|
|
| >KOG2539|consensus | Back alignment and domain information |
|---|
Probab=86.25 E-value=4.9 Score=33.84 Aligned_cols=107 Identities=14% Similarity=0.087 Sum_probs=62.9
Q ss_pred CCEEEEEcCCCcHHHHHHHHHhC-CCceEEEEEcCHHHHHHHHHHhhhcC-ccccCccceEEEEecCCCCCCCCCCeeEE
Q psy10572 51 GARILDIGSGSGYLTACLAYMAG-PEGRVYGVEHVMELAESSIKNIDKGN-SELLDQGRVQFVVWNGKHGYEREAPYDII 128 (204)
Q Consensus 51 ~~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 128 (204)
...++|+|+|.|...-.+....+ ..-.+..||.+..+.+......+... ..+....++ +--+..........||+|
T Consensus 201 pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~--~~~r~~~pi~~~~~yDlv 278 (491)
T KOG2539|consen 201 PDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKL--VFHRQRLPIDIKNGYDLV 278 (491)
T ss_pred hHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhcccc--chhcccCCCCcccceeeE
Confidence 35788899887654433333321 12368899999999999988876511 000011111 111111222334569999
Q ss_pred EECCCccchh----------HHHHHhcCCCcEEEEEecCCC
Q psy10572 129 HVSPSYFTIP----------QKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 129 ~~~~~~~~~~----------~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
++...+.++. ..+.+..++|+.+++.-.+..
T Consensus 279 i~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~ 319 (491)
T KOG2539|consen 279 ICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTT 319 (491)
T ss_pred EeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCc
Confidence 9987665422 456677889999888665554
|
|
| >PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO | Back alignment and domain information |
|---|
Probab=86.15 E-value=3 Score=29.93 Aligned_cols=93 Identities=22% Similarity=0.153 Sum_probs=41.6
Q ss_pred CCCCCEEEEEcCCCcHHHH-HHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCee
Q psy10572 48 IKPGARILDIGSGSGYLTA-CLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYD 126 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~-~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D 126 (204)
...+.+|.=.|+|....+. .+.... +.--.+.+|.++.- ...- +....+.++..+... ....|
T Consensus 65 ~~~gk~I~~yGA~~kg~tlln~~g~~-~~~I~~vvD~np~K-----~G~~------~PGt~ipI~~p~~l~----~~~pd 128 (160)
T PF08484_consen 65 KAEGKRIAGYGAGAKGNTLLNYFGLD-NDLIDYVVDDNPLK-----QGKY------LPGTHIPIVSPEELK----ERKPD 128 (160)
T ss_dssp HHTT--EEEE---SHHHHHHHHHT---TTTS--EEES-GGG-----TTEE-------TTT--EEEEGGG------SS--S
T ss_pred HHcCCEEEEECcchHHHHHHHHhCCC-cceeEEEEeCChhh-----cCcc------cCCCCCeECCHHHHh----hCCCC
Confidence 3577889999999855442 222221 22245677987641 1100 112345555555222 24567
Q ss_pred EEEECCCc--cchhHHHHHhcCCCcEEEEEec
Q psy10572 127 IIHVSPSY--FTIPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 127 ~v~~~~~~--~~~~~~~~~~Lk~gG~l~~~~~ 156 (204)
.|+..+.. ..+.+.+...++.||.+++.+|
T Consensus 129 ~vivlaw~y~~EI~~~~~~~~~~gg~fi~plP 160 (160)
T PF08484_consen 129 YVIVLAWNYKDEIIEKLREYLERGGKFIVPLP 160 (160)
T ss_dssp EEEES-GGGHHHHHHHTHHHHHTT-EEEE-SS
T ss_pred EEEEcChhhHHHHHHHHHHHHhcCCEEEEeCC
Confidence 77765433 2356777788899999998654
|
; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A. |
| >cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=86.01 E-value=12 Score=29.99 Aligned_cols=95 Identities=15% Similarity=-0.013 Sum_probs=58.0
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEec---CCC---CCC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWN---GKH---GYE 120 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d---~~~---~~~ 120 (204)
+.++.+||-.|+|. |..+..+++..+ ...+++++.++...+.+...- .. .++... ... ...
T Consensus 172 ~~~g~~vlI~g~g~vG~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~~g---------~~--~v~~~~~~~~~~~~~~~~ 239 (350)
T cd08256 172 IKFDDVVVLAGAGPLGLGMIGAARLKN-PKKLIVLDLKDERLALARKFG---------AD--VVLNPPEVDVVEKIKELT 239 (350)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEEcCCHHHHHHHHHcC---------Cc--EEecCCCcCHHHHHHHHh
Confidence 56777887777654 666677777763 235788888887666554321 11 111111 000 111
Q ss_pred CCCCeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 121 REAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 121 ~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
+...+|+++...........+.+.++++|+++..
T Consensus 240 ~~~~vdvvld~~g~~~~~~~~~~~l~~~G~~v~~ 273 (350)
T cd08256 240 GGYGCDIYIEATGHPSAVEQGLNMIRKLGRFVEF 273 (350)
T ss_pred CCCCCCEEEECCCChHHHHHHHHHhhcCCEEEEE
Confidence 2235899987655445677889999999998774
|
This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, |
| >cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=85.80 E-value=15 Score=29.28 Aligned_cols=92 Identities=23% Similarity=0.271 Sum_probs=55.7
Q ss_pred CCCCCEEEEEcC-CC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCC----CCCCC
Q psy10572 48 IKPGARILDIGS-GS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGK----HGYER 121 (204)
Q Consensus 48 ~~~~~~vLdiG~-G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~----~~~~~ 121 (204)
+.++.+||-.|+ |. |..+..+++..+ +++++++.+. ..+.++.. + .. .+...+-. .....
T Consensus 175 ~~~g~~vlI~g~~g~ig~~~~~~a~~~g--~~vi~~~~~~-~~~~~~~~----g-----~~--~~~~~~~~~~~~~~~~~ 240 (350)
T cd08274 175 VGAGETVLVTGASGGVGSALVQLAKRRG--AIVIAVAGAA-KEEAVRAL----G-----AD--TVILRDAPLLADAKALG 240 (350)
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHhcC--CEEEEEeCch-hhHHHHhc----C-----Ce--EEEeCCCccHHHHHhhC
Confidence 577889999997 43 777777777753 5788887543 44444321 1 11 11111100 01122
Q ss_pred CCCeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 122 EAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 122 ~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
...+|+++..... .....+.+.|+++|.++..
T Consensus 241 ~~~~d~vi~~~g~-~~~~~~~~~l~~~G~~v~~ 272 (350)
T cd08274 241 GEPVDVVADVVGG-PLFPDLLRLLRPGGRYVTA 272 (350)
T ss_pred CCCCcEEEecCCH-HHHHHHHHHhccCCEEEEe
Confidence 3469999866553 4678889999999998753
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like | Back alignment and domain information |
|---|
Probab=85.76 E-value=3.5 Score=33.00 Aligned_cols=95 Identities=15% Similarity=0.184 Sum_probs=58.5
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEec---CC---CCCC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWN---GK---HGYE 120 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d---~~---~~~~ 120 (204)
+.++.+|+-.|+|. |..+..+++..+ ...+++++.++...+.++..-. ..++... .. ....
T Consensus 166 ~~~g~~vlI~g~g~vg~~~~~lak~~G-~~~v~~~~~~~~~~~~~~~~ga-----------~~v~~~~~~~~~~~i~~~~ 233 (345)
T cd08287 166 VRPGSTVVVVGDGAVGLCAVLAAKRLG-AERIIAMSRHEDRQALAREFGA-----------TDIVAERGEEAVARVRELT 233 (345)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHcCC-----------ceEecCCcccHHHHHHHhc
Confidence 56677887788775 677777777763 2258888877766555543211 0111111 00 0012
Q ss_pred CCCCeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 121 REAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 121 ~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
+...+|+++....-......+.+.++++|.++..
T Consensus 234 ~~~~~d~il~~~g~~~~~~~~~~~l~~~g~~v~~ 267 (345)
T cd08287 234 GGVGADAVLECVGTQESMEQAIAIARPGGRVGYV 267 (345)
T ss_pred CCCCCCEEEECCCCHHHHHHHHHhhccCCEEEEe
Confidence 2345899987655455778899999999998764
|
This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase | Back alignment and domain information |
|---|
Probab=85.32 E-value=2.9 Score=33.37 Aligned_cols=94 Identities=26% Similarity=0.244 Sum_probs=59.1
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCce-EEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEec---CC---CCC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGR-VYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWN---GK---HGY 119 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d---~~---~~~ 119 (204)
+.++.+||-.|+|. |..+..+++..+ .+ +++++.++...+.+... .. -.++..+ .. ...
T Consensus 163 ~~~g~~VlV~g~g~vg~~~~~la~~~g--~~~v~~~~~s~~~~~~~~~~-g~----------~~~~~~~~~~~~~~i~~~ 229 (343)
T cd08235 163 IKPGDTVLVIGAGPIGLLHAMLAKASG--ARKVIVSDLNEFRLEFAKKL-GA----------DYTIDAAEEDLVEKVREL 229 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHHh-CC----------cEEecCCccCHHHHHHHH
Confidence 57788888888763 666666777653 45 88888888777666431 11 1111111 00 011
Q ss_pred CCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 120 EREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 120 ~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
.+...+|+|+...........+.+.|+++|+++..
T Consensus 230 ~~~~~vd~vld~~~~~~~~~~~~~~l~~~g~~v~~ 264 (343)
T cd08235 230 TDGRGADVVIVATGSPEAQAQALELVRKGGRILFF 264 (343)
T ss_pred hCCcCCCEEEECCCChHHHHHHHHHhhcCCEEEEE
Confidence 22345899987666555778888999999999864
|
Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i |
| >cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases | Back alignment and domain information |
|---|
Probab=85.19 E-value=12 Score=28.99 Aligned_cols=92 Identities=20% Similarity=0.211 Sum_probs=54.8
Q ss_pred CCCCCEEEEEcC-C-CcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe---cCCCCCCCC
Q psy10572 48 IKPGARILDIGS-G-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW---NGKHGYERE 122 (204)
Q Consensus 48 ~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---d~~~~~~~~ 122 (204)
+.++.+|+-.|+ | .|..+..+++.. +.+++.++.++ ..+.++. +. . ..++.. +... ....
T Consensus 142 ~~~~~~vlv~g~~g~~g~~~~~~a~~~--g~~v~~~~~~~-~~~~~~~-~g--------~--~~~~~~~~~~~~~-~~~~ 206 (309)
T cd05289 142 LKAGQTVLIHGAAGGVGSFAVQLAKAR--GARVIATASAA-NADFLRS-LG--------A--DEVIDYTKGDFER-AAAP 206 (309)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHHHc--CCEEEEEecch-hHHHHHH-cC--------C--CEEEeCCCCchhh-ccCC
Confidence 567789998886 3 366666667664 35788877655 5554432 11 0 011111 1111 1223
Q ss_pred CCeeEEEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 123 APYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 123 ~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
..+|+++...... ....+.+.++++|.++...
T Consensus 207 ~~~d~v~~~~~~~-~~~~~~~~l~~~g~~v~~g 238 (309)
T cd05289 207 GGVDAVLDTVGGE-TLARSLALVKPGGRLVSIA 238 (309)
T ss_pred CCceEEEECCchH-HHHHHHHHHhcCcEEEEEc
Confidence 4689888755443 6688889999999987643
|
Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et |
| >cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=84.90 E-value=4.9 Score=32.17 Aligned_cols=93 Identities=17% Similarity=0.084 Sum_probs=59.5
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe----cCCC---CC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW----NGKH---GY 119 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----d~~~---~~ 119 (204)
+.++.+|+-.|+|. |..+..+++.. +.++++++.++...+.++.. .. . .++.. +... ..
T Consensus 163 ~~~~~~vlV~g~g~vg~~~~~~a~~~--G~~vi~~~~~~~~~~~~~~~-g~--------~--~~i~~~~~~~~~~~~~~~ 229 (345)
T cd08260 163 VKPGEWVAVHGCGGVGLSAVMIASAL--GARVIAVDIDDDKLELAREL-GA--------V--ATVNASEVEDVAAAVRDL 229 (345)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHHHHh-CC--------C--EEEccccchhHHHHHHHH
Confidence 46778999889764 66667777765 35899998888877777432 11 1 11111 1110 01
Q ss_pred CCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 120 EREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 120 ~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
... .+|+++.............+.|+++|.++..
T Consensus 230 ~~~-~~d~vi~~~g~~~~~~~~~~~l~~~g~~i~~ 263 (345)
T cd08260 230 TGG-GAHVSVDALGIPETCRNSVASLRKRGRHVQV 263 (345)
T ss_pred hCC-CCCEEEEcCCCHHHHHHHHHHhhcCCEEEEe
Confidence 222 6999987655445667889999999998764
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty |
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=84.65 E-value=12 Score=32.59 Aligned_cols=93 Identities=9% Similarity=-0.077 Sum_probs=56.8
Q ss_pred CEEEEEcCCCcHHHHHHHHHhC-CCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC----CCCCCee
Q psy10572 52 ARILDIGSGSGYLTACLAYMAG-PEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY----EREAPYD 126 (204)
Q Consensus 52 ~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D 126 (204)
.+++-+|||. .+..+++.+. .+.+++.+|.+++.++.+++ ....++.+|..+.. ..-+..|
T Consensus 418 ~hiiI~G~G~--~G~~la~~L~~~g~~vvvId~d~~~~~~~~~------------~g~~~i~GD~~~~~~L~~a~i~~a~ 483 (558)
T PRK10669 418 NHALLVGYGR--VGSLLGEKLLAAGIPLVVIETSRTRVDELRE------------RGIRAVLGNAANEEIMQLAHLDCAR 483 (558)
T ss_pred CCEEEECCCh--HHHHHHHHHHHCCCCEEEEECCHHHHHHHHH------------CCCeEEEcCCCCHHHHHhcCccccC
Confidence 5777777775 3334444431 23489999999998888864 24678899977432 1224688
Q ss_pred EEEECCCccc---hhHHHHHhcCCCcEEEEEecCC
Q psy10572 127 IIHVSPSYFT---IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 127 ~v~~~~~~~~---~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
.+++..+... ..-...+...|+-.++..+.+.
T Consensus 484 ~viv~~~~~~~~~~iv~~~~~~~~~~~iiar~~~~ 518 (558)
T PRK10669 484 WLLLTIPNGYEAGEIVASAREKRPDIEIIARAHYD 518 (558)
T ss_pred EEEEEcCChHHHHHHHHHHHHHCCCCeEEEEECCH
Confidence 6665433322 1223345567888887766443
|
|
| >cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=84.58 E-value=17 Score=29.01 Aligned_cols=96 Identities=19% Similarity=0.204 Sum_probs=57.9
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCC---------C
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGK---------H 117 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~---------~ 117 (204)
+.++.+||-.|+|. |..+..+++..+ ...+++++.++...+.++..-.. .++..+-. .
T Consensus 159 ~~~g~~VlI~g~g~vg~~~~~la~~~G-~~~v~~~~~~~~~~~~~~~~g~~-----------~~i~~~~~~~~~~~~~~~ 226 (341)
T cd08262 159 LTPGEVALVIGCGPIGLAVIAALKARG-VGPIVASDFSPERRALALAMGAD-----------IVVDPAADSPFAAWAAEL 226 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHHcCCc-----------EEEcCCCcCHHHHHHHHH
Confidence 56788888888653 556666666653 22478888888777776543111 11111100 0
Q ss_pred CCCCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 118 GYEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 118 ~~~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
.....+.+|+++-...-........+.++++|.++..-
T Consensus 227 ~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~~v~~g 264 (341)
T cd08262 227 ARAGGPKPAVIFECVGAPGLIQQIIEGAPPGGRIVVVG 264 (341)
T ss_pred HHhCCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEEC
Confidence 01223459999865443346677889999999987643
|
The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i |
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=84.31 E-value=10 Score=30.23 Aligned_cols=94 Identities=17% Similarity=0.147 Sum_probs=52.6
Q ss_pred CCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe-cCCCCCCCCCCeeE
Q psy10572 50 PGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW-NGKHGYEREAPYDI 127 (204)
Q Consensus 50 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~D~ 127 (204)
++.+|+-+|+|. |......+... ....++.++.++.........+. ...... +..+. . ...|+
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~-g~~~V~v~~r~~~ra~~la~~~g-----------~~~~~~~~~~~~-l--~~aDv 241 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAK-GVAEITIANRTYERAEELAKELG-----------GNAVPLDELLEL-L--NEADV 241 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHcC-----------CeEEeHHHHHHH-H--hcCCE
Confidence 678999999975 55544444332 22478889998775433322221 112211 11111 1 34899
Q ss_pred EEECCCccch---hHHHHHhcCCCcEEEEEecCC
Q psy10572 128 IHVSPSYFTI---PQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 128 v~~~~~~~~~---~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
|+...+.... ...+.......+.+++.+..+
T Consensus 242 Vi~at~~~~~~~~~~~~~~~~~~~~~~viDlavP 275 (311)
T cd05213 242 VISATGAPHYAKIVERAMKKRSGKPRLIVDLAVP 275 (311)
T ss_pred EEECCCCCchHHHHHHHHhhCCCCCeEEEEeCCC
Confidence 9998877665 333333333367888877654
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1 | Back alignment and domain information |
|---|
Probab=84.23 E-value=5 Score=31.86 Aligned_cols=92 Identities=12% Similarity=-0.004 Sum_probs=54.7
Q ss_pred CCCEEEEE--cCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe---cCCC---CCC
Q psy10572 50 PGARILDI--GSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW---NGKH---GYE 120 (204)
Q Consensus 50 ~~~~vLdi--G~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---d~~~---~~~ 120 (204)
++..++-+ |+|. |..+..+++..+ +++++++.++...+.+++.-. . .++.. +... ...
T Consensus 142 ~~~~vlv~~~g~g~vG~~a~q~a~~~G--~~vi~~~~~~~~~~~~~~~g~---------~--~~i~~~~~~~~~~v~~~~ 208 (324)
T cd08291 142 EGAKAVVHTAAASALGRMLVRLCKADG--IKVINIVRRKEQVDLLKKIGA---------E--YVLNSSDPDFLEDLKELI 208 (324)
T ss_pred CCCcEEEEccCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHcCC---------c--EEEECCCccHHHHHHHHh
Confidence 34444443 5554 677777777753 589999989888777765211 1 11111 1110 112
Q ss_pred CCCCeeEEEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 121 REAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 121 ~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
....+|+++...... ........++++|+++..-
T Consensus 209 ~~~~~d~vid~~g~~-~~~~~~~~l~~~G~~v~~g 242 (324)
T cd08291 209 AKLNATIFFDAVGGG-LTGQILLAMPYGSTLYVYG 242 (324)
T ss_pred CCCCCcEEEECCCcH-HHHHHHHhhCCCCEEEEEE
Confidence 224589998655543 3466788899999987753
|
2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin |
| >PRK08618 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=84.08 E-value=20 Score=28.78 Aligned_cols=96 Identities=18% Similarity=0.094 Sum_probs=53.8
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEE-ecCCCCCCCCCCee
Q psy10572 49 KPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVV-WNGKHGYEREAPYD 126 (204)
Q Consensus 49 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~D 126 (204)
....++.-+|||. |...........+-.++..++.++...+...+.+.... .+.+.. .+..+. . ...|
T Consensus 125 ~~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~-------~~~~~~~~~~~~~-~--~~aD 194 (325)
T PRK08618 125 EDAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKF-------NTEIYVVNSADEA-I--EEAD 194 (325)
T ss_pred CCCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhc-------CCcEEEeCCHHHH-H--hcCC
Confidence 3456899999996 54433332222133478888999887766665554311 122222 221111 1 3589
Q ss_pred EEEECCCccchhHHHHHhcCCCcEEEEEecC
Q psy10572 127 IIHVSPSYFTIPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 127 ~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
+|++..+..+..-. ..|+||-.+ ..+.+
T Consensus 195 iVi~aT~s~~p~i~--~~l~~G~hV-~~iGs 222 (325)
T PRK08618 195 IIVTVTNAKTPVFS--EKLKKGVHI-NAVGS 222 (325)
T ss_pred EEEEccCCCCcchH--HhcCCCcEE-EecCC
Confidence 99887766554333 788886554 44443
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=83.92 E-value=24 Score=29.52 Aligned_cols=112 Identities=16% Similarity=0.103 Sum_probs=64.1
Q ss_pred ChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhC-CCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEE
Q psy10572 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAG-PEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV 111 (204)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 111 (204)
.+.....+...+........+|+-+|+| .++..+++.+. .+..++.+|.++..++.++... .++.++
T Consensus 213 ~~~~l~~~~~~~~~~~~~~~~iiIiG~G--~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~----------~~~~~i 280 (453)
T PRK09496 213 AREHIRAVMSEFGRLEKPVKRVMIVGGG--NIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL----------PNTLVL 280 (453)
T ss_pred CHHHHHHHHHHhCccCCCCCEEEEECCC--HHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC----------CCCeEE
Confidence 4445555555555434456789888885 45544555442 2358999999999887776532 246678
Q ss_pred EecCCCCC----CCCCCeeEEEECCCccc---hhHHHHHhcCCCcEEEEEecC
Q psy10572 112 VWNGKHGY----EREAPYDIIHVSPSYFT---IPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 112 ~~d~~~~~----~~~~~~D~v~~~~~~~~---~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
.+|..... ..-..+|.|++...... ....+.+.+.+. .+++.+.+
T Consensus 281 ~gd~~~~~~L~~~~~~~a~~vi~~~~~~~~n~~~~~~~~~~~~~-~ii~~~~~ 332 (453)
T PRK09496 281 HGDGTDQELLEEEGIDEADAFIALTNDDEANILSSLLAKRLGAK-KVIALVNR 332 (453)
T ss_pred ECCCCCHHHHHhcCCccCCEEEECCCCcHHHHHHHHHHHHhCCC-eEEEEECC
Confidence 88865321 12246888877654432 122333444443 44444433
|
|
| >cd05286 QOR2 Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Probab=83.91 E-value=5.3 Score=31.03 Aligned_cols=94 Identities=22% Similarity=0.218 Sum_probs=59.5
Q ss_pred CCCCCEEEEEcC-C-CcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEec---CC---CCC
Q psy10572 48 IKPGARILDIGS-G-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWN---GK---HGY 119 (204)
Q Consensus 48 ~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d---~~---~~~ 119 (204)
+.++.+||-.|+ | .|..+..+++..+ ..+++++.++...+.+++. . .. .++..+ .. ...
T Consensus 134 ~~~g~~vlI~g~~g~~g~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~~-g--------~~--~~~~~~~~~~~~~~~~~ 200 (320)
T cd05286 134 VKPGDTVLVHAAAGGVGLLLTQWAKALG--ATVIGTVSSEEKAELARAA-G--------AD--HVINYRDEDFVERVREI 200 (320)
T ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHHC-C--------CC--EEEeCCchhHHHHHHHH
Confidence 567889998884 4 3677777777753 5889988888777766432 1 11 111111 00 011
Q ss_pred CCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 120 EREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 120 ~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
.....+|+++..... .......+.|+++|.++..-
T Consensus 201 ~~~~~~d~vl~~~~~-~~~~~~~~~l~~~g~~v~~g 235 (320)
T cd05286 201 TGGRGVDVVYDGVGK-DTFEGSLDSLRPRGTLVSFG 235 (320)
T ss_pred cCCCCeeEEEECCCc-HhHHHHHHhhccCcEEEEEe
Confidence 223469999876554 46778889999999988643
|
Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone |
| >PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B | Back alignment and domain information |
|---|
Probab=83.74 E-value=4.5 Score=28.59 Aligned_cols=94 Identities=19% Similarity=0.255 Sum_probs=48.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCC----CCC
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYER----EAP 124 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~ 124 (204)
....-|||+|-|+|.-=-.+...+ |+..++++|..-..-..+ -.+.-.++.+|+.+.... ..+
T Consensus 27 ~~~G~VlElGLGNGRTydHLRe~~-p~R~I~vfDR~l~~hp~~------------~P~~~~~ilGdi~~tl~~~~~~g~~ 93 (160)
T PF12692_consen 27 GLPGPVLELGLGNGRTYDHLREIF-PDRRIYVFDRALACHPSS------------TPPEEDLILGDIRETLPALARFGAG 93 (160)
T ss_dssp T--S-EEEE--TTSHHHHHHHHH---SS-EEEEESS--S-GGG---------------GGGEEES-HHHHHHHHHHH-S-
T ss_pred CCCCceEEeccCCCccHHHHHHhC-CCCeEEEEeeecccCCCC------------CCchHheeeccHHHHhHHHHhcCCc
Confidence 455789999999999988898888 788999999532211111 012334566665543211 234
Q ss_pred eeEEEECCCccc----------hhHHHHHhcCCCcEEEEEe
Q psy10572 125 YDIIHVSPSYFT----------IPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 125 ~D~v~~~~~~~~----------~~~~~~~~Lk~gG~l~~~~ 155 (204)
.-++..+.+... +...+..+|.|||+++-..
T Consensus 94 a~laHaD~G~g~~~~d~a~a~~lspli~~~la~gGi~vS~~ 134 (160)
T PF12692_consen 94 AALAHADIGTGDKEKDDATAAWLSPLIAPVLAPGGIMVSGQ 134 (160)
T ss_dssp EEEEEE----S-HHHHHHHHHHHHHHHGGGEEEEEEEEESS
T ss_pred eEEEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCC
Confidence 556655555432 4456678899999987643
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.69 E-value=6.6 Score=30.94 Aligned_cols=85 Identities=19% Similarity=0.172 Sum_probs=48.2
Q ss_pred CEEEEEcCCC--cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEE-ecCCCCCCCCCCeeEE
Q psy10572 52 ARILDIGSGS--GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVV-WNGKHGYEREAPYDII 128 (204)
Q Consensus 52 ~~vLdiG~G~--G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~D~v 128 (204)
.+|+-+|.|- |.++..+.... ....+++.|.+...++.+...- +.... .+.. .......|+|
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g-~~v~i~g~d~~~~~~~~a~~lg------------v~d~~~~~~~--~~~~~~aD~V 68 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAG-LVVRIIGRDRSAATLKAALELG------------VIDELTVAGL--AEAAAEADLV 68 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcC-CeEEEEeecCcHHHHHHHhhcC------------cccccccchh--hhhcccCCEE
Confidence 5788899885 34445444443 5567899999888777775321 11111 1100 1122457888
Q ss_pred EECCCccc---hhHHHHHhcCCCcEE
Q psy10572 129 HVSPSYFT---IPQKLLDQLVPGGRM 151 (204)
Q Consensus 129 ~~~~~~~~---~~~~~~~~Lk~gG~l 151 (204)
+..-+... +++++...|++|.++
T Consensus 69 ivavPi~~~~~~l~~l~~~l~~g~iv 94 (279)
T COG0287 69 IVAVPIEATEEVLKELAPHLKKGAIV 94 (279)
T ss_pred EEeccHHHHHHHHHHhcccCCCCCEE
Confidence 88777654 334555556666554
|
|
| >cd08241 QOR1 Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Probab=83.60 E-value=5.5 Score=31.04 Aligned_cols=96 Identities=19% Similarity=0.216 Sum_probs=57.5
Q ss_pred CCCCCEEEEEcC-C-CcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCC---CCCCCC
Q psy10572 48 IKPGARILDIGS-G-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGK---HGYERE 122 (204)
Q Consensus 48 ~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~---~~~~~~ 122 (204)
+.++.+|+-.|| | .|..+..+++..+ ..+++++.++...+.++..... .-+.....+.. ......
T Consensus 137 ~~~~~~vli~g~~~~~g~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~~g~~--------~~~~~~~~~~~~~i~~~~~~ 206 (323)
T cd08241 137 LQPGETVLVLGAAGGVGLAAVQLAKALG--ARVIAAASSEEKLALARALGAD--------HVIDYRDPDLRERVKALTGG 206 (323)
T ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHcCCc--------eeeecCCccHHHHHHHHcCC
Confidence 567889999998 3 3666666666643 5799998888777766432100 00000001110 011122
Q ss_pred CCeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 123 APYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 123 ~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
..+|+++..... .....+.+.++++|.++..
T Consensus 207 ~~~d~v~~~~g~-~~~~~~~~~~~~~g~~v~~ 237 (323)
T cd08241 207 RGVDVVYDPVGG-DVFEASLRSLAWGGRLLVI 237 (323)
T ss_pred CCcEEEEECccH-HHHHHHHHhhccCCEEEEE
Confidence 458998876554 4567788999999998764
|
QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic |
| >cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=83.60 E-value=4.6 Score=31.57 Aligned_cols=95 Identities=20% Similarity=0.142 Sum_probs=57.7
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCce-EEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEec---CC---CCC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGR-VYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWN---GK---HGY 119 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d---~~---~~~ 119 (204)
+.++.+||-.|+|. |..+..+++..+ .+ ++++..++...+.++.. . . ..++... .. ...
T Consensus 127 ~~~~~~vlI~g~g~vg~~~~~la~~~g--~~~v~~~~~~~~~~~~~~~~-g--------~--~~~~~~~~~~~~~~l~~~ 193 (312)
T cd08269 127 IRAGKTVAVIGAGFIGLLFLQLAAAAG--ARRVIAIDRRPARLALAREL-G--------A--TEVVTDDSEAIVERVREL 193 (312)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHHh-C--------C--ceEecCCCcCHHHHHHHH
Confidence 56788888887653 556666666653 46 88887777666544321 1 1 1111111 00 011
Q ss_pred CCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 120 EREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 120 ~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
.+...+|+++...+.........+.|+++|.++..-
T Consensus 194 ~~~~~vd~vld~~g~~~~~~~~~~~l~~~g~~~~~g 229 (312)
T cd08269 194 TGGAGADVVIEAVGHQWPLDLAGELVAERGRLVIFG 229 (312)
T ss_pred cCCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEEc
Confidence 223469999887655556788899999999998643
|
The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i |
| >COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=83.46 E-value=6.7 Score=33.09 Aligned_cols=74 Identities=16% Similarity=0.182 Sum_probs=48.9
Q ss_pred CCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEE
Q psy10572 51 GARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIH 129 (204)
Q Consensus 51 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 129 (204)
+++|+-+|-|- |..+..+.... +..+++.|.++.......... ...++.+..+.... .....+|+|+
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~--G~~v~v~D~~~~~~~~~~~~~--------~~~~i~~~~g~~~~--~~~~~~d~vV 74 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKL--GAEVTVSDDRPAPEGLAAQPL--------LLEGIEVELGSHDD--EDLAEFDLVV 74 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHC--CCeEEEEcCCCCccchhhhhh--------hccCceeecCccch--hccccCCEEE
Confidence 78999999994 76666666554 369999998777622222211 13567777776444 2235699999
Q ss_pred ECCCccc
Q psy10572 130 VSPSYFT 136 (204)
Q Consensus 130 ~~~~~~~ 136 (204)
.+++.+.
T Consensus 75 ~SPGi~~ 81 (448)
T COG0771 75 KSPGIPP 81 (448)
T ss_pred ECCCCCC
Confidence 9988754
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=82.99 E-value=9.6 Score=30.25 Aligned_cols=86 Identities=16% Similarity=0.224 Sum_probs=47.7
Q ss_pred CEEEEEcCCC-cH-HHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEE
Q psy10572 52 ARILDIGSGS-GY-LTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIH 129 (204)
Q Consensus 52 ~~vLdiG~G~-G~-~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 129 (204)
.+|.-||+|. |. ++..+.+.. ....++++|.++...+.++.. + . ... ...+... .. ...|+|+
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g-~~~~V~~~dr~~~~~~~a~~~----g-----~-~~~-~~~~~~~-~~--~~aDvVi 71 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLG-LAGEIVGADRSAETRARAREL----G-----L-GDR-VTTSAAE-AV--KGADLVI 71 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhC----C-----C-Cce-ecCCHHH-Hh--cCCCEEE
Confidence 5788899886 33 233333321 223799999999877666432 1 0 001 1111111 11 3579998
Q ss_pred ECCCccc---hhHHHHHhcCCCcEEE
Q psy10572 130 VSPSYFT---IPQKLLDQLVPGGRMV 152 (204)
Q Consensus 130 ~~~~~~~---~~~~~~~~Lk~gG~l~ 152 (204)
...+... +.+.+...++++..++
T Consensus 72 iavp~~~~~~v~~~l~~~l~~~~iv~ 97 (307)
T PRK07502 72 LCVPVGASGAVAAEIAPHLKPGAIVT 97 (307)
T ss_pred ECCCHHHHHHHHHHHHhhCCCCCEEE
Confidence 8877643 3456666788887554
|
|
| >cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH) | Back alignment and domain information |
|---|
Probab=82.95 E-value=23 Score=28.87 Aligned_cols=95 Identities=25% Similarity=0.348 Sum_probs=57.3
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCC---CCCCCCC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGK---HGYEREA 123 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~---~~~~~~~ 123 (204)
+.++.+||-.|+|. |..+..+++..+ ...++++|.++...+.+++.-. ..+.....+.. ..... .
T Consensus 174 ~~~g~~vlI~g~g~vg~~~~~~a~~~G-~~~vi~~~~~~~~~~~~~~~g~---------~~v~~~~~~~~~~i~~~~~-~ 242 (375)
T cd08282 174 VQPGDTVAVFGAGPVGLMAAYSAILRG-ASRVYVVDHVPERLDLAESIGA---------IPIDFSDGDPVEQILGLEP-G 242 (375)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHcCC---------eEeccCcccHHHHHHHhhC-C
Confidence 56788888888875 667777777653 2278889988877776654210 00000000100 01112 4
Q ss_pred CeeEEEECCCccc-----------hhHHHHHhcCCCcEEEE
Q psy10572 124 PYDIIHVSPSYFT-----------IPQKLLDQLVPGGRMVM 153 (204)
Q Consensus 124 ~~D~v~~~~~~~~-----------~~~~~~~~Lk~gG~l~~ 153 (204)
.+|+++....... .+..+.+.|+++|.+..
T Consensus 243 ~~d~v~d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 283 (375)
T cd08282 243 GVDRAVDCVGYEARDRGGEAQPNLVLNQLIRVTRPGGGIGI 283 (375)
T ss_pred CCCEEEECCCCcccccccccchHHHHHHHHHHhhcCcEEEE
Confidence 5898887654332 36788999999999854
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo |
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.69 E-value=21 Score=27.98 Aligned_cols=78 Identities=12% Similarity=0.049 Sum_probs=41.8
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHh-CCCceEEEEEcCHH-HHHHHHHHhhhcCccccCccceEEEEecCCCCC-----C--
Q psy10572 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVME-LAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-----E-- 120 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~vD~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~-- 120 (204)
+++++|-.|++ |.++..+++.+ ..+.+++.++.++. ..+.....+... ..++.++..|+.+.. .
T Consensus 45 ~~k~iLItGas-ggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~------~~~~~~~~~Dl~~~~~~~~~~~~ 117 (290)
T PRK06701 45 KGKVALITGGD-SGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKE------GVKCLLIPGDVSDEAFCKDAVEE 117 (290)
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhc------CCeEEEEEccCCCHHHHHHHHHH
Confidence 35678877754 44555555443 23458888877642 233333333221 135677888865321 1
Q ss_pred ---CCCCeeEEEECCCc
Q psy10572 121 ---REAPYDIIHVSPSY 134 (204)
Q Consensus 121 ---~~~~~D~v~~~~~~ 134 (204)
..+.+|+++.++..
T Consensus 118 i~~~~~~iD~lI~~Ag~ 134 (290)
T PRK06701 118 TVRELGRLDILVNNAAF 134 (290)
T ss_pred HHHHcCCCCEEEECCcc
Confidence 11468988877543
|
|
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=82.66 E-value=1 Score=32.22 Aligned_cols=95 Identities=15% Similarity=0.099 Sum_probs=51.3
Q ss_pred CCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHH-HHHHhhhcCccccCccceEEEEecCCCCC-CCCCCeeEE
Q psy10572 51 GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAES-SIKNIDKGNSELLDQGRVQFVVWNGKHGY-EREAPYDII 128 (204)
Q Consensus 51 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v 128 (204)
+++++-+|+..-..-.....+ ...++..+|.++--++. .+.++ ..+...|+...+ ...++||.+
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~--GA~~iltveyn~L~i~~~~~dr~------------ssi~p~df~~~~~~y~~~fD~~ 67 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQH--GAAKILTVEYNKLEIQEEFRDRL------------SSILPVDFAKNWQKYAGSFDFA 67 (177)
T ss_pred CceEEEEecCCchhhHHHHHc--CCceEEEEeecccccCccccccc------------ccccHHHHHHHHHHhhccchhh
Confidence 456777777754443333333 23478888876521111 11110 111112222111 112568877
Q ss_pred EECCCccc-----------------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 129 HVSPSYFT-----------------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 129 ~~~~~~~~-----------------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
.+.....+ -..++.+.||+||.+++.++-+.
T Consensus 68 as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~ 115 (177)
T PF03269_consen 68 ASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGT 115 (177)
T ss_pred heechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCC
Confidence 66544433 23678899999999999998775
|
|
| >COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=82.64 E-value=5.4 Score=31.66 Aligned_cols=47 Identities=26% Similarity=0.297 Sum_probs=37.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhh
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~ 97 (204)
+.++.+|.-+|+|......++++. | .+|..||+++..+...+-+++.
T Consensus 61 ~g~ghrivtigSGGcn~L~ylsr~--P-a~id~VDlN~ahiAln~lklaA 107 (414)
T COG5379 61 LGIGHRIVTIGSGGCNMLAYLSRA--P-ARIDVVDLNPAHIALNRLKLAA 107 (414)
T ss_pred cCCCcEEEEecCCcchHHHHhhcC--C-ceeEEEeCCHHHHHHHHHHHHH
Confidence 678889999999977666666664 2 4999999999998887777654
|
|
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=82.52 E-value=15 Score=29.29 Aligned_cols=97 Identities=14% Similarity=0.164 Sum_probs=52.7
Q ss_pred CEEEEEcCCC-c-HHHHHHHHHhCCCceEEEEEcCHHHHHHHHHH--hhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 52 ARILDIGSGS-G-YLTACLAYMAGPEGRVYGVEHVMELAESSIKN--IDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 52 ~~vLdiG~G~-G-~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
.+|+-+|+|. | .++..|++.. ..|+.++.++..++..++. +.... ............. ..+..++|+
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G---~~V~lv~r~~~~~~~i~~~~Gl~i~~-----~g~~~~~~~~~~~-~~~~~~~D~ 73 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAG---LPVRLILRDRQRLAAYQQAGGLTLVE-----QGQASLYAIPAET-ADAAEPIHR 73 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCC---CCeEEEEechHHHHHHhhcCCeEEee-----CCcceeeccCCCC-cccccccCE
Confidence 4789999996 4 4556665532 4799999887666555432 11000 0111111111111 112357998
Q ss_pred EEECCCccc---hhHHHHHhcCCCcEEEEEecC
Q psy10572 128 IHVSPSYFT---IPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 128 v~~~~~~~~---~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
|++..-..+ .++.+...+.++..++.....
T Consensus 74 viv~vK~~~~~~al~~l~~~l~~~t~vv~lQNG 106 (305)
T PRK05708 74 LLLACKAYDAEPAVASLAHRLAPGAELLLLQNG 106 (305)
T ss_pred EEEECCHHhHHHHHHHHHhhCCCCCEEEEEeCC
Confidence 877644333 456777788888866554433
|
|
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=82.52 E-value=5.9 Score=27.57 Aligned_cols=99 Identities=21% Similarity=0.102 Sum_probs=49.6
Q ss_pred EEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC-CCCCCeeEEEEC
Q psy10572 54 ILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-EREAPYDIIHVS 131 (204)
Q Consensus 54 vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v~~~ 131 (204)
|+-+|+|. |.+-...... .+.+|+.+..++ ..+..+..--.... ...+..+......... ....++|+|++.
T Consensus 1 I~I~G~GaiG~~~a~~L~~--~g~~V~l~~r~~-~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~~D~viv~ 74 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQ--AGHDVTLVSRSP-RLEAIKEQGLTITG---PDGDETVQPPIVISAPSADAGPYDLVIVA 74 (151)
T ss_dssp EEEESTSHHHHHHHHHHHH--TTCEEEEEESHH-HHHHHHHHCEEEEE---TTEEEEEEEEEEESSHGHHHSTESEEEE-
T ss_pred CEEECcCHHHHHHHHHHHH--CCCceEEEEccc-cHHhhhheeEEEEe---cccceecccccccCcchhccCCCcEEEEE
Confidence 45577775 4443333322 335899999777 55554332111000 0011111111111111 234679999887
Q ss_pred CCccc---hhHHHHHhcCCCcEEEEEecCC
Q psy10572 132 PSYFT---IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 132 ~~~~~---~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
.-... .++.+...+.++..+++...+.
T Consensus 75 vKa~~~~~~l~~l~~~~~~~t~iv~~qNG~ 104 (151)
T PF02558_consen 75 VKAYQLEQALQSLKPYLDPNTTIVSLQNGM 104 (151)
T ss_dssp SSGGGHHHHHHHHCTGEETTEEEEEESSSS
T ss_pred ecccchHHHHHHHhhccCCCcEEEEEeCCC
Confidence 54443 5567888889997776644433
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.52 E-value=20 Score=27.46 Aligned_cols=74 Identities=16% Similarity=0.129 Sum_probs=43.5
Q ss_pred CCEEEEEcCCCcHHHHHHHHHh-CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC-----C----
Q psy10572 51 GARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-----E---- 120 (204)
Q Consensus 51 ~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~---- 120 (204)
++++|-.|+ +|.++..+++.+ ..+.+|+.++.++...+...... ..++.++..|+.+.. .
T Consensus 6 ~k~vlItGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---------~~~~~~~~~Dl~~~~~~~~~~~~~~ 75 (261)
T PRK08265 6 GKVAIVTGG-ATLIGAAVARALVAAGARVAIVDIDADNGAAVAASL---------GERARFIATDITDDAAIERAVATVV 75 (261)
T ss_pred CCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---------CCeeEEEEecCCCHHHHHHHHHHHH
Confidence 457776665 455555555543 23458999998876544443322 135777888866321 0
Q ss_pred -CCCCeeEEEECCCc
Q psy10572 121 -REAPYDIIHVSPSY 134 (204)
Q Consensus 121 -~~~~~D~v~~~~~~ 134 (204)
..+..|+++.+...
T Consensus 76 ~~~g~id~lv~~ag~ 90 (261)
T PRK08265 76 ARFGRVDILVNLACT 90 (261)
T ss_pred HHhCCCCEEEECCCC
Confidence 11468999887653
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=82.51 E-value=6.8 Score=30.95 Aligned_cols=97 Identities=13% Similarity=0.113 Sum_probs=55.7
Q ss_pred CCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEE-ecCCCCCCCCCCeeE
Q psy10572 50 PGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVV-WNGKHGYEREAPYDI 127 (204)
Q Consensus 50 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~D~ 127 (204)
.+.+++-+|+|. |......++.. +++++.++.++...+.+... ...... .+..+ .. ..+|+
T Consensus 150 ~gk~v~IiG~G~iG~avA~~L~~~--G~~V~v~~R~~~~~~~~~~~------------g~~~~~~~~l~~-~l--~~aDi 212 (287)
T TIGR02853 150 HGSNVMVLGFGRTGMTIARTFSAL--GARVFVGARSSADLARITEM------------GLIPFPLNKLEE-KV--AEIDI 212 (287)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHC------------CCeeecHHHHHH-Hh--ccCCE
Confidence 467999999986 44444444443 35899999888654443211 111111 11111 11 35899
Q ss_pred EEECCCccchhHHHHHhcCCCcEEEEEecCCCCcceE
Q psy10572 128 IHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPFKGQNL 164 (204)
Q Consensus 128 v~~~~~~~~~~~~~~~~Lk~gG~l~~~~~~~~~~~~~ 164 (204)
|+...+..-+.......++++ .+++.+.+......+
T Consensus 213 Vint~P~~ii~~~~l~~~k~~-aliIDlas~Pg~tdf 248 (287)
T TIGR02853 213 VINTIPALVLTADVLSKLPKH-AVIIDLASKPGGTDF 248 (287)
T ss_pred EEECCChHHhCHHHHhcCCCC-eEEEEeCcCCCCCCH
Confidence 998776654456677888875 566666555444333
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes | Back alignment and domain information |
|---|
Probab=81.86 E-value=2.4 Score=32.57 Aligned_cols=44 Identities=14% Similarity=-0.016 Sum_probs=31.2
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhh
Q psy10572 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNID 96 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~ 96 (204)
...+++|.-||+|..+..+.... ..++.-|+++......+..++
T Consensus 20 ~~~~~vepF~G~g~V~~~~~~~~---~~vi~ND~~~~l~~~~~~~l~ 63 (260)
T PF02086_consen 20 KHKTYVEPFAGGGSVFLNLKQPG---KRVIINDINPDLINFWKAVLK 63 (260)
T ss_dssp S-SEEEETT-TTSHHHHCC---S---SEEEEEES-HHHHHHHHHHHH
T ss_pred CCCEEEEEecchhHHHHHhcccc---cceeeeechHHHHHHHHHHHh
Confidence 68899999999999998886633 389999999998877764443
|
There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B. |
| >cd08246 crotonyl_coA_red crotonyl-CoA reductase | Back alignment and domain information |
|---|
Probab=81.70 E-value=27 Score=28.56 Aligned_cols=104 Identities=22% Similarity=0.137 Sum_probs=59.6
Q ss_pred CCCCCEEEEEcC-CC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEE-------------E
Q psy10572 48 IKPGARILDIGS-GS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV-------------V 112 (204)
Q Consensus 48 ~~~~~~vLdiG~-G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------------~ 112 (204)
+.++.+||-.|+ |. |..+..+++..+ .++++++.++...+.+++.-.....+.-..+..... .
T Consensus 191 ~~~g~~vlV~ga~g~iG~a~~~lak~~G--~~vv~~~~s~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (393)
T cd08246 191 VKPGDNVLIWGASGGLGSMAIQLARAAG--ANPVAVVSSEEKAEYCRALGAEGVINRRDFDHWGVLPDVNSEAYTAWTKE 268 (393)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHcC--CeEEEEeCCHHHHHHHHHcCCCEEEcccccccccccccccchhhhhhhhc
Confidence 567889999987 43 777777777753 578888888888888765211100000000000000 0
Q ss_pred e-cCC---CCCCCCC-CeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 113 W-NGK---HGYEREA-PYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 113 ~-d~~---~~~~~~~-~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
. ... ....... .+|+++..... .......+.++++|+++..
T Consensus 269 ~~~~~~~v~~l~~~~~g~d~vid~~g~-~~~~~~~~~l~~~G~~v~~ 314 (393)
T cd08246 269 ARRFGKAIWDILGGREDPDIVFEHPGR-ATFPTSVFVCDRGGMVVIC 314 (393)
T ss_pred cchHHHHHHHHhCCCCCCeEEEECCch-HhHHHHHHHhccCCEEEEE
Confidence 0 000 0011222 58999876543 4567788999999999874
|
Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma |
| >COG2933 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.49 E-value=5.4 Score=31.13 Aligned_cols=71 Identities=25% Similarity=0.281 Sum_probs=50.9
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
+.++....|+|+-+|+.+-.+.++. ..|++||-. .|.... - ..+.++-...|.....+...+.|-
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVkr~---m~V~aVDng-~ma~sL----~-------dtg~v~h~r~DGfk~~P~r~~idW 273 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVKRN---MRVYAVDNG-PMAQSL----M-------DTGQVTHLREDGFKFRPTRSNIDW 273 (358)
T ss_pred hcCCceeeecccCCCccchhhhhcc---eEEEEeccc-hhhhhh----h-------cccceeeeeccCcccccCCCCCce
Confidence 5788999999999999999998864 499999943 333222 1 235778888887765444466887
Q ss_pred EEECCC
Q psy10572 128 IHVSPS 133 (204)
Q Consensus 128 v~~~~~ 133 (204)
.+|+-+
T Consensus 274 mVCDmV 279 (358)
T COG2933 274 MVCDMV 279 (358)
T ss_pred EEeehh
Confidence 777643
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=81.35 E-value=10 Score=28.13 Aligned_cols=34 Identities=26% Similarity=0.249 Sum_probs=21.3
Q ss_pred CCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcC
Q psy10572 50 PGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHV 84 (204)
Q Consensus 50 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~ 84 (204)
...+|+-+|||. |......+... .-++++.+|.+
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~-Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGA-GVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHc-CCCeEEEecCC
Confidence 456899999995 55433333332 22488888876
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A | Back alignment and domain information |
|---|
Probab=81.34 E-value=6.3 Score=24.43 Aligned_cols=36 Identities=28% Similarity=0.458 Sum_probs=22.3
Q ss_pred CCCCEEEEEcCCCcH-HHHHHHHHhCCCceEEEEEcC
Q psy10572 49 KPGARILDIGSGSGY-LTACLAYMAGPEGRVYGVEHV 84 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~-~~~~l~~~~~~~~~v~~vD~~ 84 (204)
...++||-+||.+|+ ++..++..++.++..+||-..
T Consensus 37 ~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~fE 73 (78)
T PF12242_consen 37 NGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSFE 73 (78)
T ss_dssp TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE--
T ss_pred CCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEeec
Confidence 445799999999997 445566666567788888643
|
|
| >KOG1209|consensus | Back alignment and domain information |
|---|
Probab=81.26 E-value=15 Score=27.88 Aligned_cols=74 Identities=16% Similarity=0.146 Sum_probs=47.2
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhC-CCceEEEEEcCHH-HHHHHHHHhhhcCccccCccceEEEEecCCCC--------
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAG-PEGRVYGVEHVME-LAESSIKNIDKGNSELLDQGRVQFVVWNGKHG-------- 118 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~vD~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 118 (204)
.....||-.||..|..+-.+++.+. .++.|++.-.+-+ |.+.+.+. .+.....|..+.
T Consensus 5 ~~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~~------------gl~~~kLDV~~~~~V~~v~~ 72 (289)
T KOG1209|consen 5 SQPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQF------------GLKPYKLDVSKPEEVVTVSG 72 (289)
T ss_pred cCCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHhh------------CCeeEEeccCChHHHHHHHH
Confidence 4567899999999999999988763 4568888754433 33333221 233444443321
Q ss_pred ---CCCCCCeeEEEECCCc
Q psy10572 119 ---YEREAPYDIIHVSPSY 134 (204)
Q Consensus 119 ---~~~~~~~D~v~~~~~~ 134 (204)
..+.++.|+.+.|++.
T Consensus 73 evr~~~~Gkld~L~NNAG~ 91 (289)
T KOG1209|consen 73 EVRANPDGKLDLLYNNAGQ 91 (289)
T ss_pred HHhhCCCCceEEEEcCCCC
Confidence 1356889999888665
|
|
| >PRK07340 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=81.05 E-value=22 Score=28.28 Aligned_cols=93 Identities=16% Similarity=0.099 Sum_probs=52.0
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 49 KPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 49 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
....+++-+|||. |...........+..++...+.++...+.....+... .+.+...+..+.. ...|+
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~--------~~~~~~~~~~~av---~~aDi 191 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARAL--------GPTAEPLDGEAIP---EAVDL 191 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhc--------CCeeEECCHHHHh---hcCCE
Confidence 4457999999996 5444444333223347888899988776666655431 1222222222111 46899
Q ss_pred EEECCCccc-hhHHHHHhcCCCcEEEEEec
Q psy10572 128 IHVSPSYFT-IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 128 v~~~~~~~~-~~~~~~~~Lk~gG~l~~~~~ 156 (204)
|+...+... ++.. .+|||-.+ ..+.
T Consensus 192 VitaT~s~~Pl~~~---~~~~g~hi-~~iG 217 (304)
T PRK07340 192 VVTATTSRTPVYPE---AARAGRLV-VAVG 217 (304)
T ss_pred EEEccCCCCceeCc---cCCCCCEE-EecC
Confidence 987665544 3332 36766544 4444
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.81 E-value=22 Score=26.80 Aligned_cols=99 Identities=20% Similarity=0.154 Sum_probs=52.3
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHh-CCCceEEEEEcCHH-HHHHHHHHhhhcCccccCccceEEEEecCCCCC-----C--
Q psy10572 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVME-LAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-----E-- 120 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~vD~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~-- 120 (204)
.+.++|-.|+. |.++..+++.+ ..+.+|+++..+.. ..+.....+... ..++.++..|+.... .
T Consensus 5 ~~k~vlItGas-ggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~------~~~~~~~~~D~~~~~~~~~~~~~ 77 (248)
T PRK07806 5 PGKTALVTGSS-RGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAA------GGRASAVGADLTDEESVAALMDT 77 (248)
T ss_pred CCcEEEEECCC-CcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhc------CCceEEEEcCCCCHHHHHHHHHH
Confidence 34678877754 45555555544 23457888776542 233332222221 135667777765321 0
Q ss_pred ---CCCCeeEEEECCCcc-------------------chhHHHHHhcCCCcEEEEEe
Q psy10572 121 ---REAPYDIIHVSPSYF-------------------TIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 121 ---~~~~~D~v~~~~~~~-------------------~~~~~~~~~Lk~gG~l~~~~ 155 (204)
..+..|+++.+.... .+.+.+...++.+|.+++..
T Consensus 78 ~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~is 134 (248)
T PRK07806 78 AREEFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVT 134 (248)
T ss_pred HHHhCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEe
Confidence 113588888776431 13355666666667766543
|
|
| >cd05288 PGDH Prostaglandin dehydrogenases | Back alignment and domain information |
|---|
Probab=80.62 E-value=9 Score=30.26 Aligned_cols=93 Identities=19% Similarity=0.241 Sum_probs=58.2
Q ss_pred CCCCCEEEEEcC-C-CcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe---cCC---CCC
Q psy10572 48 IKPGARILDIGS-G-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW---NGK---HGY 119 (204)
Q Consensus 48 ~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---d~~---~~~ 119 (204)
+.++.+||-.|+ | .|..+..+++..+ .++++++.++...+.+++.+.. ..++.. +.. ...
T Consensus 143 ~~~~~~vlI~g~~g~ig~~~~~~a~~~G--~~vi~~~~~~~~~~~~~~~~g~----------~~~~~~~~~~~~~~v~~~ 210 (329)
T cd05288 143 PKPGETVVVSAAAGAVGSVVGQIAKLLG--ARVVGIAGSDEKCRWLVEELGF----------DAAINYKTPDLAEALKEA 210 (329)
T ss_pred CCCCCEEEEecCcchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHhhcCC----------ceEEecCChhHHHHHHHh
Confidence 467788988884 4 3777777777753 5899998888777766552211 011111 110 011
Q ss_pred CCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 120 EREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 120 ~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
.. ..+|+++....- .....+.+.|+++|.++..
T Consensus 211 ~~-~~~d~vi~~~g~-~~~~~~~~~l~~~G~~v~~ 243 (329)
T cd05288 211 AP-DGIDVYFDNVGG-EILDAALTLLNKGGRIALC 243 (329)
T ss_pred cc-CCceEEEEcchH-HHHHHHHHhcCCCceEEEE
Confidence 12 469988865443 4678888999999998753
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino |
| >PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=80.35 E-value=14 Score=27.87 Aligned_cols=77 Identities=12% Similarity=-0.025 Sum_probs=45.3
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHh-CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC---------
Q psy10572 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY--------- 119 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------- 119 (204)
++.++|-.|+ +|.++..+++.+ ..+.+++.++.++..++.+.+.+... ..++.++..|.....
T Consensus 4 ~~~~~lItG~-~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~~ 76 (253)
T PRK08217 4 KDKVIVITGG-AQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGAL------GTEVRGYAANVTDEEDVEATFAQI 76 (253)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCceEEEEcCCCCHHHHHHHHHHH
Confidence 3567887776 444555554443 23458999998887665555444331 235677777765321
Q ss_pred -CCCCCeeEEEECCC
Q psy10572 120 -EREAPYDIIHVSPS 133 (204)
Q Consensus 120 -~~~~~~D~v~~~~~ 133 (204)
...+++|.|+.+.+
T Consensus 77 ~~~~~~id~vi~~ag 91 (253)
T PRK08217 77 AEDFGQLNGLINNAG 91 (253)
T ss_pred HHHcCCCCEEEECCC
Confidence 00146899988765
|
|
| >cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases | Back alignment and domain information |
|---|
Probab=80.25 E-value=9.8 Score=30.00 Aligned_cols=93 Identities=16% Similarity=0.030 Sum_probs=57.5
Q ss_pred CCCEEEEEcC-CC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEec---CCCCCCCCCC
Q psy10572 50 PGARILDIGS-GS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWN---GKHGYEREAP 124 (204)
Q Consensus 50 ~~~~vLdiG~-G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d---~~~~~~~~~~ 124 (204)
.+.+||-.|+ |. |..+..+++..+ .+++.++.++...+.++..- . ..+-..... ..... ....
T Consensus 146 ~~~~vlI~g~~g~vg~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~~g-~--------~~v~~~~~~~~~~~~~~-~~~~ 213 (326)
T cd08289 146 EQGPVLVTGATGGVGSLAVSILAKLG--YEVVASTGKADAADYLKKLG-A--------KEVIPREELQEESIKPL-EKQR 213 (326)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCC--CeEEEEecCHHHHHHHHHcC-C--------CEEEcchhHHHHHHHhh-ccCC
Confidence 3568888887 43 667777777754 58899988888777774421 1 000000000 00111 2345
Q ss_pred eeEEEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 125 YDIIHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 125 ~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
+|+|+..... .......+.|+++|+++..-
T Consensus 214 ~d~vld~~g~-~~~~~~~~~l~~~G~~i~~g 243 (326)
T cd08289 214 WAGAVDPVGG-KTLAYLLSTLQYGGSVAVSG 243 (326)
T ss_pred cCEEEECCcH-HHHHHHHHHhhcCCEEEEEe
Confidence 8988865544 56788899999999998754
|
yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 204 | ||||
| 1i1n_A | 226 | Human Protein L-Isoaspartate O-Methyltransferase Wi | 5e-42 | ||
| 1r18_A | 227 | Drosophila Protein Isoaspartyl Methyltransferase Wi | 6e-33 | ||
| 2pbf_A | 227 | Crystal Structure Of A Putative Protein-L-Isoaspart | 1e-21 | ||
| 2yxe_A | 215 | Crystal Structure Of L-Isoaspartyl Protein Carboxyl | 2e-21 | ||
| 1jg4_A | 235 | Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O- | 1e-17 | ||
| 3lbf_A | 210 | Crystal Structure Of Protein L-Isoaspartyl Methyltr | 1e-15 | ||
| 1dl5_A | 317 | Protein-L-Isoaspartate O-Methyltransferase Length = | 2e-12 | ||
| 1vbf_A | 231 | Crystal Structure Of Protein L-Isoaspartate O-Methy | 3e-06 | ||
| 1o54_A | 277 | Crystal Structure Of Sam-Dependent O-Methyltransfer | 5e-05 | ||
| 3mb5_A | 255 | Crystal Structure Of P. Abyssi Trna M1a58 Methyltra | 2e-04 | ||
| 3lhd_C | 253 | Crystal Structure Of P. Abyssi Trna M1a58 Methyltra | 2e-04 | ||
| 1i9g_A | 280 | Crystal Structure Of An Adomet Dependent Methyltran | 3e-04 |
| >pdb|1I1N|A Chain A, Human Protein L-Isoaspartate O-Methyltransferase With S- Adenosyl Homocysteine Length = 226 | Back alignment and structure |
|
| >pdb|1R18|A Chain A, Drosophila Protein Isoaspartyl Methyltransferase With S-Adenosyl-L- Homocysteine Length = 227 | Back alignment and structure |
|
| >pdb|2PBF|A Chain A, Crystal Structure Of A Putative Protein-L-Isoaspartate O- Methyltransferase Beta-Aspartate Methyltransferase (Pcmt) From Plasmodium Falciparum In Complex With S-Adenosyl-L-Homocysteine Length = 227 | Back alignment and structure |
|
| >pdb|2YXE|A Chain A, Crystal Structure Of L-Isoaspartyl Protein Carboxyl Methyltranferase Length = 215 | Back alignment and structure |
|
| >pdb|1JG4|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O- Methyltransferase With S-Adenosylmethionine Length = 235 | Back alignment and structure |
|
| >pdb|3LBF|A Chain A, Crystal Structure Of Protein L-Isoaspartyl Methyltransferase From Escherichia Coli Length = 210 | Back alignment and structure |
|
| >pdb|1DL5|A Chain A, Protein-L-Isoaspartate O-Methyltransferase Length = 317 | Back alignment and structure |
|
| >pdb|1VBF|A Chain A, Crystal Structure Of Protein L-Isoaspartate O-Methyltransferase Homologue From Sulfolobus Tokodaii Length = 231 | Back alignment and structure |
|
| >pdb|1O54|A Chain A, Crystal Structure Of Sam-Dependent O-Methyltransferase (Tm0748) From Thermotoga Maritima At 1.65 A Resolution Length = 277 | Back alignment and structure |
|
| >pdb|3MB5|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58 Methyltransferase In Complex With S-Adenosyl-L-Methionine Length = 255 | Back alignment and structure |
|
| >pdb|3LHD|C Chain C, Crystal Structure Of P. Abyssi Trna M1a58 Methyltransferase In Complex With S-Adenosyl-L-Homocysteine Length = 253 | Back alignment and structure |
|
| >pdb|1I9G|A Chain A, Crystal Structure Of An Adomet Dependent Methyltransferase Length = 280 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* Length = 226 | Back alignment and structure |
|---|
Score = 230 bits (589), Expect = 2e-77
Identities = 90/199 (45%), Positives = 120/199 (60%), Gaps = 4/199 (2%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSG 60
ML DR ++ PY + IG+ A IS+PH+HA LELL D++ GA+ LD+GSG
Sbjct: 31 MLATDRSHY---AKCNPYMDSPQSIGFQATISAPHMHAYALELLFDQLHEGAKALDVGSG 87
Query: 61 SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE 120
SG LTAC A M G G+V G++H+ EL + S+ N+ K + LL GRVQ VV +G+ GY
Sbjct: 88 SGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYA 147
Query: 121 REAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYTIVTTV 180
EAPYD IHV + +PQ L+DQL PGGR+++PVG Q L DKL DG +I
Sbjct: 148 EEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDG-SIKMKP 206
Query: 181 VRGVRTNPLYRDRFQQKKY 199
+ GV PL Q ++
Sbjct: 207 LMGVIYVPLTDKEKQWSRW 225
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 Length = 227 | Back alignment and structure |
|---|
Score = 224 bits (572), Expect = 8e-75
Identities = 77/190 (40%), Positives = 108/190 (56%), Gaps = 9/190 (4%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSG 60
M DRK++ PY + IG G IS+PH+HA LE L+D +KPGARILD+GSG
Sbjct: 38 MKETDRKHY---SPRNPYMDAPQPIGGGVTISAPHMHAFALEYLRDHLKPGARILDVGSG 94
Query: 61 SGYLTACLAYMAGPEG-----RVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNG 115
SGYLTAC +G R+ G+EH EL S N++ + +LD G++ V +G
Sbjct: 95 SGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDG 154
Query: 116 KHGYEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYT 175
+ GY APY+ IHV + P +L++QL GGR+++PVG Q + DK A+G
Sbjct: 155 RKGYPPNAPYNAIHVGAAAPDTPTELINQLASGGRLIVPVGPDGGSQYMQQYDKDANG-K 213
Query: 176 IVTTVVRGVR 185
+ T + GV
Sbjct: 214 VEMTRLMGVM 223
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} Length = 227 | Back alignment and structure |
|---|
Score = 208 bits (531), Expect = 1e-68
Identities = 61/200 (30%), Positives = 96/200 (48%), Gaps = 14/200 (7%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSG 60
ML+VDR + + PY I +G IS+PH+HA L+ L + +KPG+R +D+GSG
Sbjct: 34 MLQVDRGKY---IKEIPYIDTPVYISHGVTISAPHMHALSLKRLINVLKPGSRAIDVGSG 90
Query: 61 SGYLTACLAYMA----GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVV---- 112
SGYLT C+A V G+E V +L S++NI + ELL + +
Sbjct: 91 SGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIY 150
Query: 113 WNGKHGYEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLAD 172
+ + +D IHV S +P+ L+D L G++++P+ E + Q L I K
Sbjct: 151 QVNEEEKKELGLFDAIHVGASASELPEILVDLLAENGKLIIPIEEDYT-QVLYEITKKNG 209
Query: 173 GYTIVTTVVRGVRTNPLYRD 192
+ V L ++
Sbjct: 210 KII--KDRLFDVCFVSLKKN 227
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* Length = 235 | Back alignment and structure |
|---|
Score = 196 bits (501), Expect = 6e-64
Identities = 56/190 (29%), Positives = 95/190 (50%), Gaps = 12/190 (6%)
Query: 1 MLRVDRKNFF-TRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGS 59
L+ R + + + I G +S+PH+ A MLE+ +KPG IL++G+
Sbjct: 43 FLKYPRYLSVEDKYKKYAHIDEPLPIPAGQTVSAPHMVAIMLEIAN--LKPGMNILEVGT 100
Query: 60 GSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY 119
GSG+ A ++ + + VY +E + EL E + +N+++ V ++ +G G+
Sbjct: 101 GSGWNAALISEIVKTD--VYTIERIPELVEFAKRNLER-----AGVKNVHVILGDGSKGF 153
Query: 120 EREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYTIVTT 179
+APYD+I V+ IP+ L++QL GG++++PVG Q L + K DG
Sbjct: 154 PPKAPYDVIIVTAGAPKIPEPLIEQLKIGGKLIIPVGSYHLWQELLEVRKTKDGIK--IK 211
Query: 180 VVRGVRTNPL 189
GV PL
Sbjct: 212 NHGGVAFVPL 221
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} Length = 215 | Back alignment and structure |
|---|
Score = 193 bits (493), Expect = 5e-63
Identities = 67/190 (35%), Positives = 99/190 (52%), Gaps = 12/190 (6%)
Query: 1 MLRVDRKNFF-TRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGS 59
+L+V R+ F + Y +IGYG IS+ H+ M ELL +KPG ++L+IG+
Sbjct: 29 LLKVPREEFLPEHLKEYAYVDTPLEIGYGQTISAIHMVGMMCELLD--LKPGMKVLEIGT 86
Query: 60 GSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY 119
G GY A A + G +G V +E + ELAE + + + K L V +V +G GY
Sbjct: 87 GCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRK-----LGYDNVIVIVGDGTLGY 141
Query: 120 EREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYTIVTT 179
E APYD I+ + + IP+ L+ QL GG+++MPVG Q L + +K D I+
Sbjct: 142 EPLAPYDRIYTTAAGPKIPEPLIRQLKDGGKLLMPVGR--YLQRLVLAEKRGDE--IIIK 197
Query: 180 VVRGVRTNPL 189
V PL
Sbjct: 198 DCGPVAFVPL 207
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 Length = 317 | Back alignment and structure |
|---|
Score = 178 bits (453), Expect = 9e-56
Identities = 46/192 (23%), Positives = 84/192 (43%), Gaps = 16/192 (8%)
Query: 1 MLRVDRKNFFTRVV-------NEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGAR 53
L + R+ F T+ + + S P + A +E + + G R
Sbjct: 22 FLEIPREEFLTKSYPLSYVYEDIVLVSY-DDGEEYSTSSQPSLMALFMEWVG--LDKGMR 78
Query: 54 ILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW 113
+L+IG G+GY A ++ + G +G V VE+ ++ E + +N+++ L V FV
Sbjct: 79 VLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVER-----LGIENVIFVCG 133
Query: 114 NGKHGYEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADG 173
+G +G +PYD+I V+ +P+ QL GGR+++P+ + + K D
Sbjct: 134 DGYYGVPEFSPYDVIFVTVGVDEVPETWFTQLKEGGRVIVPINLKLSRRQPAFLFKKKDP 193
Query: 174 YTIVTTVVRGVR 185
+V R
Sbjct: 194 -YLVGNYKLETR 204
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 Length = 231 | Back alignment and structure |
|---|
Score = 175 bits (446), Expect = 1e-55
Identities = 47/196 (23%), Positives = 88/196 (44%), Gaps = 26/196 (13%)
Query: 1 MLRVDRKNFFTRVVNEPYR-------IKSRQIGYGADISSPHIHAQMLELLKDKIKPGAR 53
+VDR F + E + ++ I G + ++ ++ ML+ L + G +
Sbjct: 20 FNKVDRSLF----LPENLKDYAYAHTHEALPILPGINTTALNLGIFMLDELD--LHKGQK 73
Query: 54 ILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW 113
+L+IG+G GY TA +A + +V VE ++ + K + N ++ ++
Sbjct: 74 VLEIGTGIGYYTALIAEIVD---KVVSVEINEKMYNYASKLLSYYN-------NIKLILG 123
Query: 114 NGKHGYEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADG 173
+G GYE E PYD + V + T+ K +QL GG M++P+G + Q L + K +
Sbjct: 124 DGTLGYEEEKPYDRVVVWATAPTLLCKPYEQLKEGGIMILPIGVG-RVQKLYKVIKKGNS 182
Query: 174 YTIVTTVVRGVRTNPL 189
+ + V +
Sbjct: 183 PS--LENLGEVMFGRI 196
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} Length = 210 | Back alignment and structure |
|---|
Score = 168 bits (429), Expect = 2e-53
Identities = 60/190 (31%), Positives = 93/190 (48%), Gaps = 15/190 (7%)
Query: 1 MLRVDRKNFF-TRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGS 59
+ V R+ F + + + IG G IS P++ A+M ELL+ + P +R+L+IG+
Sbjct: 29 LAAVPREKFVDEAFEQKAWDNIALPIGQGQTISQPYMVARMTELLE--LTPQSRVLEIGT 86
Query: 60 GSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY 119
GSGY TA LA++ V VE + L + + + LD V +G G+
Sbjct: 87 GSGYQTAILAHLVQ---HVCSVERIKGLQWQARRRLKN-----LDLHNVSTRHGDGWQGW 138
Query: 120 EREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYTIVTT 179
+ AP+D I V+ + IP L+ QL GG +V+PVGE + Q L + + +
Sbjct: 139 QARAPFDAIIVTAAPPEIPTALMTQLDEGGILVLPVGE--EHQYLKRVRRRGGEFI--ID 194
Query: 180 VVRGVRTNPL 189
V VR PL
Sbjct: 195 TVEAVRFVPL 204
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 Length = 336 | Back alignment and structure |
|---|
Score = 72.5 bits (177), Expect = 2e-15
Identities = 33/155 (21%), Positives = 57/155 (36%), Gaps = 13/155 (8%)
Query: 25 IGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHV 84
+ G I+ P +L ++ I PG +L+ GSGSG ++ L+ G +GRV E
Sbjct: 82 MKRGTAITFPKDINMILSMMD--INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVR 139
Query: 85 MELAESSIKNIDK-GNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVS--------PSYF 135
+ + + KN +S L + H A DI ++ +
Sbjct: 140 KDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDMLNPH 199
Query: 136 TIPQKLLDQLVPGGRMVMPVGEPFKGQNLTIIDKL 170
L GG + V Q + ++D +
Sbjct: 200 VTLPVFYPHLKHGGVCAVYV--VNITQVIELLDGI 232
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} Length = 258 | Back alignment and structure |
|---|
Score = 70.9 bits (173), Expect = 4e-15
Identities = 32/133 (24%), Positives = 54/133 (40%), Gaps = 7/133 (5%)
Query: 25 IGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHV 84
+ A + P + M+ LL + PG R+L+ G+GSG LT LA G +G V E
Sbjct: 73 MKRSATPTYPKDASAMVTLLD--LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEAR 130
Query: 85 MELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHV-SPSYFTIPQKLLD 143
+ +N+ V+F + + EA YD + + + + +K
Sbjct: 131 PHHLAQAERNVRA----FWQVENVRFHLGKLEEAELEEAAYDGVALDLMEPWKVLEKAAL 186
Query: 144 QLVPGGRMVMPVG 156
L P +V +
Sbjct: 187 ALKPDRFLVAYLP 199
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* Length = 255 | Back alignment and structure |
|---|
Score = 70.4 bits (172), Expect = 5e-15
Identities = 38/133 (28%), Positives = 55/133 (41%), Gaps = 6/133 (4%)
Query: 23 RQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
++ G I P A ++ I PG I++ G GSG LT LA + GPEGRV E
Sbjct: 68 DKMKRGPQIVHPKDAALIVAYAG--ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYE 125
Query: 83 HVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIPQKLL 142
+ A+ + +NI + RV + + G E E +I P + +
Sbjct: 126 IREDFAKLAWENIKWAGFD----DRVTIKLKDIYEGIEEENVDHVILDLPQPERVVEHAA 181
Query: 143 DQLVPGGRMVMPV 155
L PGG V
Sbjct: 182 KALKPGGFFVAYT 194
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 Length = 277 | Back alignment and structure |
|---|
Score = 68.9 bits (168), Expect = 2e-14
Identities = 33/131 (25%), Positives = 52/131 (39%), Gaps = 6/131 (4%)
Query: 25 IGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHV 84
+ I P + + +L +K G RI+D G GSG + A LA G G+V+ E
Sbjct: 89 MKRRTQIVYPKDSSFIAMMLD--VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKR 146
Query: 85 MELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIPQKLLDQ 144
E A+ + N+ K RV V + G++ + + P + K +
Sbjct: 147 EEFAKLAESNLTKWG----LIERVTIKVRDISEGFDEKDVDALFLDVPDPWNYIDKCWEA 202
Query: 145 LVPGGRMVMPV 155
L GGR
Sbjct: 203 LKGGGRFATVC 213
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} Length = 248 | Back alignment and structure |
|---|
Score = 68.5 bits (167), Expect = 3e-14
Identities = 27/132 (20%), Positives = 48/132 (36%), Gaps = 10/132 (7%)
Query: 25 IGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHV 84
I P + L + R+L+ G+GSG L A L+ +AG VE
Sbjct: 68 FERKTQIIYPKDSFYIALKLN--LNKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEF 125
Query: 85 MELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVS-PSYFTIPQKLLD 143
+ A+ ++K + G V+F + K E + V + +K+
Sbjct: 126 YKTAQKNLKKFNLGK-------NVKFFNVDFKDAEVPEGIFHAAFVDVREPWHYLEKVHK 178
Query: 144 QLVPGGRMVMPV 155
L+ G + +
Sbjct: 179 SLMEGAPVGFLL 190
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197 | Back alignment and structure |
|---|
Score = 65.3 bits (159), Expect = 1e-13
Identities = 28/131 (21%), Positives = 47/131 (35%), Gaps = 28/131 (21%)
Query: 42 ELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSE 101
+ +K +K G ++D G+G TA LA + G GRV+G + + ++ K + N
Sbjct: 14 DYIKMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLN-- 71
Query: 102 LLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIP--------------------QKL 141
RV + H + Y V F + K
Sbjct: 72 --LIDRVTLI--KDGH--QNMDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKA 125
Query: 142 LDQLVPGGRMV 152
++ LV GG +
Sbjct: 126 MELLVTGGIIT 136
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 Length = 280 | Back alignment and structure |
|---|
Score = 61.7 bits (149), Expect = 7e-12
Identities = 37/146 (25%), Positives = 62/146 (42%), Gaps = 7/146 (4%)
Query: 28 GADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMEL 87
G + P AQ++ I PGAR+L+ G+GSG LT L GP G+V E +
Sbjct: 79 GPQVIYPKDAAQIVHEGD--IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADH 136
Query: 88 AESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHV-SPSYFTIPQKLLDQLV 146
AE + +N+ + D + VV + + D + + + + + LV
Sbjct: 137 AEHARRNVSGCYGQPPDN--WRLVVSDLADSELPDGSVDRAVLDMLAPWEVLDAVSRLLV 194
Query: 147 PGGRMVMPVGEPFKGQNLTIIDKLAD 172
GG +++ V Q I++ L
Sbjct: 195 AGGVLMVYV--ATVTQLSRIVEALRA 218
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383 | Back alignment and structure |
|---|
Score = 59.3 bits (143), Expect = 7e-11
Identities = 25/123 (20%), Positives = 45/123 (36%), Gaps = 19/123 (15%)
Query: 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV-----------EHVMELAESSIKNID 96
GA +LD+G G+G + + G G+V GV ++V AE +
Sbjct: 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPS 140
Query: 97 KGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIP--QKLLDQ----LVPGGR 150
+ N L +G ++ + G ++ DI+ + L + L GG
Sbjct: 141 RSNVRFL-KGFIENLATAEPEGVP-DSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGE 198
Query: 151 MVM 153
+
Sbjct: 199 LYF 201
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 2e-10
Identities = 25/136 (18%), Positives = 56/136 (41%), Gaps = 28/136 (20%)
Query: 30 DISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAE 89
+ ++L+ +K G +LD+G+G+G+ L+ M G +G+VY ++ E+
Sbjct: 20 RLELFDPE-KVLKEFG--LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEM-- 74
Query: 90 SSIKNIDKGNSELLDQG--RVQFVVWNGKHGYEREAPY-----DIIHVSPSY--FTIPQK 140
++ ++ G V+ + E + P D I ++ ++ + P K
Sbjct: 75 -----VNYAWEKVNKLGLKNVEVL-----KSEENKIPLPDNTVDFIFMAFTFHELSEPLK 124
Query: 141 LLDQ----LVPGGRMV 152
L++ P +
Sbjct: 125 FLEELKRVAKPFAYLA 140
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298 | Back alignment and structure |
|---|
Score = 57.9 bits (139), Expect = 2e-10
Identities = 23/133 (17%), Positives = 48/133 (36%), Gaps = 13/133 (9%)
Query: 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTA-CLAYMAGPEGRVYGVEHVMELAESS 91
++ E + + G R + IG G LT L+++ G RV VE ++AE S
Sbjct: 105 PRYLELLKNEAALGRFRRGERAVFIGGGPLPLTGILLSHVYG--MRVNVVEIEPDIAELS 162
Query: 92 IKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVS---PSYFTIPQKLLDQLVPG 148
K I+ + V + + +D++ V+ + + + +
Sbjct: 163 RKVIEGLGVD-----GVNVITGDETV--IDGLEFDVLMVAALAEPKRRVFRNIHRYVDTE 215
Query: 149 GRMVMPVGEPFKG 161
R++ +
Sbjct: 216 TRIIYRTYTGMRA 228
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 Length = 275 | Back alignment and structure |
|---|
Score = 57.8 bits (139), Expect = 2e-10
Identities = 37/179 (20%), Positives = 67/179 (37%), Gaps = 23/179 (12%)
Query: 24 QIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEH 83
QI D + ++ ++PG IL++G GSG +++ + Y +G + VE
Sbjct: 92 QIISEIDA------SYIIMRCG--LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVER 143
Query: 84 VMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIPQKLLD 143
+ + ++ N+ + D G V+ + + +I P + QK+
Sbjct: 144 DEDNLKKAMDNLSE----FYDIGNVRTSRSDIADFISDQMYDAVIADIPDPWNHVQKIAS 199
Query: 144 QLVPGGRMVMPVGEPFKGQNLTIIDKL-ADGYTIVTTV--------VRGVRTNPLYRDR 193
+ PG + P Q+ + L A G + TV VR T P D
Sbjct: 200 MMKPGSVATFYL--PNFDQSEKTVLSLSASGMHHLETVELMKRRILVREGATRPASDDL 256
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 55.6 bits (134), Expect = 7e-10
Identities = 23/134 (17%), Positives = 46/134 (34%), Gaps = 19/134 (14%)
Query: 30 DISSPHIHA--QMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMEL 87
P + + ILD+G+G+G L+A L PE V
Sbjct: 22 RKFIPCFDDFYGVSVSIASVDTENPDILDLGAGTGLLSAFLM-EKYPEATFTLV------ 74
Query: 88 AESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDII-------HVSPS-YFTIPQ 139
+ S K ++ + +V+++ + Y+ E YD++ H+ + +
Sbjct: 75 -DMSEKMLEIAKNRFRGNLKVKYIEADYSK-YDFEEKYDMVVSALSIHHLEDEDKKELYK 132
Query: 140 KLLDQLVPGGRMVM 153
+ L G +
Sbjct: 133 RSYSILKESGIFIN 146
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} Length = 292 | Back alignment and structure |
|---|
Score = 55.7 bits (133), Expect = 1e-09
Identities = 31/135 (22%), Positives = 50/135 (37%), Gaps = 6/135 (4%)
Query: 15 NEPYRIKSRQIGYG-----ADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLA 69
++ + R+ YG +P L +LK + G +LD+G G+LT +A
Sbjct: 6 AAGFKKQQRKFQYGNYCKYYGYRNPSCEDGRLRVLKPEWFRGRDVLDLGCNVGHLTLSIA 65
Query: 70 YMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIH 129
GP R+ G++ L S+ +NI SE L G G E
Sbjct: 66 CKWGP-SRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS 124
Query: 130 VSPSYFTIPQKLLDQ 144
P+ T + +
Sbjct: 125 CFPASLTASRGPIAA 139
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185 | Back alignment and structure |
|---|
Score = 54.5 bits (131), Expect = 1e-09
Identities = 27/124 (21%), Positives = 53/124 (42%), Gaps = 18/124 (14%)
Query: 42 ELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVME--------LAESSIK 93
+ L + + + ++D G+G T A++AG +VY + + L++ I+
Sbjct: 14 DFLAEVLDDESIVVDATMGNGNDT---AFLAGLSKKVYAFDVQEQALGKTSQRLSDLGIE 70
Query: 94 NID--KGNSELLDQ---GRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIPQKLLDQLVPG 148
N + E LD ++ ++N Y A +I + +K+LD+L G
Sbjct: 71 NTELILDGHENLDHYVREPIRAAIFNLG--YLPSADKSVITKPHTTLEAIEKILDRLEVG 128
Query: 149 GRMV 152
GR+
Sbjct: 129 GRLA 132
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305 | Back alignment and structure |
|---|
Score = 55.5 bits (133), Expect = 1e-09
Identities = 20/137 (14%), Positives = 43/137 (31%), Gaps = 20/137 (14%)
Query: 29 ADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV---EHVM 85
A +++ H L+ ++PG + + G L Y A P ++ G+ +
Sbjct: 97 AVLATRERHGHFRRALQRHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEAL 156
Query: 86 ELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIP------- 138
+ A ++ + + YD++ + P
Sbjct: 157 DGATRLAAGHALAG-------QITLHRQDAWK-LDTREGYDLLTSNGLNIYEPDDARVTE 208
Query: 139 --QKLLDQLVPGGRMVM 153
++ L PGG +V
Sbjct: 209 LYRRFWQALKPGGALVT 225
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* Length = 225 | Back alignment and structure |
|---|
Score = 54.1 bits (130), Expect = 2e-09
Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 5/88 (5%)
Query: 41 LELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNS 100
LEL+ + GA +LD+GS YL G E V +S++KN++
Sbjct: 6 LELVASFVSQGAILLDVGSDHAYL-PIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGL 64
Query: 101 ELLDQGRVQFVVWNGKHGYEREAPYDII 128
+ ++Q + NG +E +I
Sbjct: 65 K----EKIQVRLANGLAAFEETDQVSVI 88
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} Length = 204 | Back alignment and structure |
|---|
Score = 53.4 bits (128), Expect = 4e-09
Identities = 23/128 (17%), Positives = 47/128 (36%), Gaps = 11/128 (8%)
Query: 31 ISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAES 90
I+ + A L L+ ++ + DIG+GS ++ + + P GR++ +E +
Sbjct: 23 ITKQEVRAVTLSKLR--LQDDLVMWDIGAGSASVSIEASNLM-PNGRIFALERNPQYLGF 79
Query: 91 SIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIP---QKLLDQLVP 147
N+ K V V G + D + + S + + +L
Sbjct: 80 IRDNLKK-----FVARNVTLVEAFAPEGLDDLPDPDRVFIGGSGGMLEEIIDAVDRRLKS 134
Query: 148 GGRMVMPV 155
G +V+
Sbjct: 135 EGVIVLNA 142
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} Length = 178 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 5e-09
Identities = 26/132 (19%), Positives = 38/132 (28%), Gaps = 21/132 (15%)
Query: 31 ISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAES 90
++ H+ A + L KP + DIG GSG + P+ E E E
Sbjct: 8 LTKQHVRALAISALA--PKPHETLWDIGGGSGSIAIEWLRST-PQTTAVCFEISEERRER 64
Query: 91 SIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYD--------IIHVSPSYFTIPQKLL 142
+ N L V A D I + +
Sbjct: 65 ILSNAIN-----LGVSDRIAV-----QQGAPRAFDDVPDNPDVIFIGGGLTAPGVFAAAW 114
Query: 143 DQLVPGGRMVMP 154
+L GGR+V
Sbjct: 115 KRLPVGGRLVAN 126
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} Length = 230 | Back alignment and structure |
|---|
Score = 53.4 bits (128), Expect = 5e-09
Identities = 25/117 (21%), Positives = 46/117 (39%), Gaps = 9/117 (7%)
Query: 41 LELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNS 100
L+ + + + GAR+LD+GS YL G E V +S++KN+ +
Sbjct: 12 LQKVANYVPKGARLLDVGSDHAYL-PIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGL 70
Query: 101 ELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIPQKLL----DQLVPGGRMVM 153
++ + NG +E D I + + +L D+L +V+
Sbjct: 71 T----SKIDVRLANGLSAFEEADNIDTITICGMGGRLIADILNNDIDKLQHVKTLVL 123
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* Length = 192 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 8e-09
Identities = 24/120 (20%), Positives = 47/120 (39%), Gaps = 12/120 (10%)
Query: 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97
++ L + +D+G G+G +T LA RVY ++ E ++ N+ +
Sbjct: 23 CLIMCLAE--PGKNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQR 77
Query: 98 GNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIP---QKLLDQLVPGGRMVMP 154
V + + + DI V S + + + D+L PGGR+++
Sbjct: 78 ----HGLGDNVTLMEGDAPEALCKIPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVT 133
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226 | Back alignment and structure |
|---|
Score = 52.0 bits (124), Expect = 1e-08
Identities = 23/136 (16%), Positives = 41/136 (30%), Gaps = 21/136 (15%)
Query: 27 YGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV---EH 83
+ +S P L + P R+L+ G G G A A R
Sbjct: 25 WARVLSGPDPELTFDLWLSRLLTPQTRVLEAGCGHGPDAARFGPQA---ARWAAYDFSPE 81
Query: 84 VMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG--YEREAPYDIIHVSPSYFTIPQKL 141
+++LA ++ + WNGK AP+ +I ++ +L
Sbjct: 82 LLKLARANAPH-------------ADVYEWNGKGELPAGLGAPFGLIVSRRGPTSVILRL 128
Query: 142 LDQLVPGGRMVMPVGE 157
+ P +
Sbjct: 129 PELAAPDAHFLYVGPR 144
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217 | Back alignment and structure |
|---|
Score = 51.8 bits (124), Expect = 1e-08
Identities = 23/126 (18%), Positives = 46/126 (36%), Gaps = 11/126 (8%)
Query: 34 PHIHAQMLELLKDKIK--PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESS 91
++ Q + + +K R++D+G G G L L + E ++ GV+ E +
Sbjct: 11 ISLNQQRMNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFE-QITGVDVSYRSLEIA 69
Query: 92 IKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDII-------HVSPSYF-TIPQKLLD 143
+ +D+ R+Q + + +R YD H+ S + L +
Sbjct: 70 QERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFE 129
Query: 144 QLVPGG 149
P
Sbjct: 130 FAQPKI 135
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} Length = 233 | Back alignment and structure |
|---|
Score = 52.0 bits (124), Expect = 2e-08
Identities = 25/128 (19%), Positives = 53/128 (41%), Gaps = 15/128 (11%)
Query: 36 IHAQMLELLKD-KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKN 94
+ A +L+ L + +K G RIL +G SG + ++ + GP GR+YGVE + +
Sbjct: 62 LAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTV 121
Query: 95 IDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIPQKLLDQ-------LVP 147
+ + + ++ + + + + + + P++ L
Sbjct: 122 VRD-------RRNIFPILGDARFPEKYRHLVEGVDGLYADVAQPEQAAIVVRNARFFLRD 174
Query: 148 GGRMVMPV 155
GG M+M +
Sbjct: 175 GGYMLMAI 182
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284 | Back alignment and structure |
|---|
Score = 52.3 bits (125), Expect = 2e-08
Identities = 22/131 (16%), Positives = 44/131 (33%), Gaps = 18/131 (13%)
Query: 33 SPHIHAQMLELLKD---KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAE 89
+ + + L + KI I+D G G GYL L + + G++
Sbjct: 2 DLYYNDDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDS------ 55
Query: 90 SSIKNIDKGNSELLDQG-RVQFVVWNGKHGYEREAPYDIIHVSPS--YFTIPQKLLDQ-- 144
+ + +F+ + E YDI + T P+ +L +
Sbjct: 56 -GETLLAEARELFRLLPYDSEFLEGDA-TEIELNDKYDIAICHAFLLHMTTPETMLQKMI 113
Query: 145 --LVPGGRMVM 153
+ GG+++
Sbjct: 114 HSVKKGGKIIC 124
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Length = 275 | Back alignment and structure |
|---|
Score = 51.6 bits (123), Expect = 3e-08
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV 81
+KPG +IL+IG G G L+A LA G G V G+
Sbjct: 41 VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGI 74
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} Length = 244 | Back alignment and structure |
|---|
Score = 50.7 bits (121), Expect = 5e-08
Identities = 22/88 (25%), Positives = 30/88 (34%), Gaps = 5/88 (5%)
Query: 41 LELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNS 100
LE + I RI DIGS YL C A E V +S+ K +
Sbjct: 12 LEKVASYITKNERIADIGSDHAYL-PCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGL 70
Query: 101 ELLDQGRVQFVVWNGKHGYEREAPYDII 128
++ NG E++ D I
Sbjct: 71 T----EQIDVRKGNGLAVIEKKDAIDTI 94
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} Length = 204 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 6e-08
Identities = 27/126 (21%), Positives = 44/126 (34%), Gaps = 10/126 (7%)
Query: 31 ISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAES 90
I+ + A L L + G + DIG GSG ++ GR +E + E+
Sbjct: 38 ITKSPMRALTLAALA--PRRGELLWDIGGGSGSVS---VEWCLAGGRAITIEPRADRIEN 92
Query: 91 SIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYD-IIHVSPSYFTIPQKLLDQLVPGG 149
KNID R++ V + + + +L + L PG
Sbjct: 93 IQKNIDT----YGLSPRMRAVQGTAPAALADLPLPEAVFIGGGGSQALYDRLWEWLAPGT 148
Query: 150 RMVMPV 155
R+V
Sbjct: 149 RIVANA 154
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 7e-08
Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 18/115 (15%)
Query: 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQG- 106
PGA++L+ G G G T LA P+ + ++ S ++++K G
Sbjct: 35 YPPGAKVLEAGCGIGAQTVILA-KNNPDAEITSIDI-------SPESLEKARENTEKNGI 86
Query: 107 -RVQFVVWNGKH-GYEREAPYDIIHVSPSYFTIPQK------LLDQLVPGGRMVM 153
V+F+ N +E ++ +D I V + L L PGG + +
Sbjct: 87 KNVKFLQANIFSLPFE-DSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITV 140
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Length = 260 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 1e-07
Identities = 15/95 (15%), Positives = 34/95 (35%), Gaps = 7/95 (7%)
Query: 47 KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLD-- 104
RI D+G+G+G +A + V E E+AE + ++++ ++
Sbjct: 33 ADDRACRIADLGAGAGAAGMAVAARL-EKAEVTLYERSQEMAEFARRSLELPDNAAFSAR 91
Query: 105 ----QGRVQFVVWNGKHGYEREAPYDIIHVSPSYF 135
+ V + + + ++P Y
Sbjct: 92 IEVLEADVTLRAKARVEAGLPDEHFHHVIMNPPYN 126
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 6e-07
Identities = 31/129 (24%), Positives = 51/129 (39%), Gaps = 18/129 (13%)
Query: 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSI 92
SP + + L + D + + I DIG G+G T LA G+V G+ +
Sbjct: 30 SPEVTLKALSFI-DNLTEKSLIADIGCGTGGQTMVLAGHVT--GQVTGL-------DFLS 79
Query: 93 KNIDKGNSELLDQG---RVQFVVWNGKHGYEREAPYDIIHVSPSYFTIP-QKLLDQ---- 144
ID N G RV +V + R D+I + + I ++ L++
Sbjct: 80 GFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEGAIYNIGFERGLNEWRKY 139
Query: 145 LVPGGRMVM 153
L GG + +
Sbjct: 140 LKKGGYLAV 148
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256 | Back alignment and structure |
|---|
Score = 47.5 bits (113), Expect = 6e-07
Identities = 33/130 (25%), Positives = 48/130 (36%), Gaps = 23/130 (17%)
Query: 41 LELLKDK--IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKG 98
L +KPG RILD+GSGSG + A G G+ +++ +
Sbjct: 25 YATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHG--ITGTGI----DMSSLFTAQAKRR 78
Query: 99 NSELLDQGRVQFVVWNGKHGYEREAPYDII-------HVS--PSYFTIPQKLLDQLVPGG 149
EL RV F+ + GY D+ + L L PGG
Sbjct: 79 AEELGVSERVHFIHNDAA-GYVANEKCDVAACVGATWIAGGFAGAE---ELLAQSLKPGG 134
Query: 150 RMVMPVGEPF 159
M+ +GEP+
Sbjct: 135 IML--IGEPY 142
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 47.5 bits (113), Expect = 6e-07
Identities = 22/123 (17%), Positives = 50/123 (40%), Gaps = 18/123 (14%)
Query: 39 QMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKG 98
+ + + + + A+I DIG G+G T LA G++ G+ + I+
Sbjct: 36 KAVSFINE-LTDDAKIADIGCGTGGQTLFLADYVK--GQITGI-------DLFPDFIEIF 85
Query: 99 NSELLDQG---RVQFVVWNGKHGYEREAPYDIIHVSPSYFTIP-QKLLDQ----LVPGGR 150
N + RV+ + + + + D+I + + I ++ +++ L GG
Sbjct: 86 NENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEGAIYNIGFERGMNEWSKYLKKGGF 145
Query: 151 MVM 153
+ +
Sbjct: 146 IAV 148
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 1e-06
Identities = 28/128 (21%), Positives = 48/128 (37%), Gaps = 22/128 (17%)
Query: 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97
+L+LL +PG ILD+G G+G LT + A V G +++ I+K
Sbjct: 47 EDLLQLLN--PQPGEFILDLGCGTGQLTEKI---AQSGAEVLGT-------DNAATMIEK 94
Query: 98 GNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIP------QKLLDQLVPGGRM 151
+ F V + ++ + + P D + + + + L GGR
Sbjct: 95 ARQNY---PHLHFDVADARN-FRVDKPLDAVFSNAMLHWVKEPEAAIASIHQALKSGGRF 150
Query: 152 VMPVGEPF 159
V G
Sbjct: 151 VAEFGGKG 158
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 1e-06
Identities = 27/129 (20%), Positives = 48/129 (37%), Gaps = 27/129 (20%)
Query: 35 HIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE---HVMELAESS 91
+ +A LLK K +LDIG SG L A + RV G+E E A+
Sbjct: 17 YYNAVNPNLLKHIKKEWKEVLDIGCSSGAL---GAAIKENGTRVSGIEAFPEAAEQAKEK 73
Query: 92 IKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDII-------HVSPSYFTIPQKLLDQ 144
+ ++ G+ E +D E +D + H+ + + +K+
Sbjct: 74 LDHVVLGDIETMDMP-------------YEEEQFDCVIFGDVLEHL-FDPWAVIEKVKPY 119
Query: 145 LVPGGRMVM 153
+ G ++
Sbjct: 120 IKQNGVILA 128
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} Length = 210 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 2e-06
Identities = 17/123 (13%), Positives = 37/123 (30%), Gaps = 14/123 (11%)
Query: 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSI 92
++L LL +P ++ G G G + A RV ++ + E +
Sbjct: 40 VDRQTGRLLYLLARIKQP-QLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHAR 98
Query: 93 KNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHV------SPSYFTIPQKLLDQLV 146
+ + RV+ V + + DI+ + +++ L
Sbjct: 99 RMLHDNGLI----DRVELQVGDPLGIAAGQRDIDILFMDCDVFNGADVL---ERMNRCLA 151
Query: 147 PGG 149
Sbjct: 152 KNA 154
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Length = 259 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 2e-06
Identities = 20/92 (21%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Query: 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRV 108
+I+D+ SG+G + L+ + ++ GVE LA+ + +++ ++L DQ +
Sbjct: 48 IRKGKIIDLCSGNGIIPLLLSTR--TKAKIVGVEIQERLADMAKRSVA--YNQLEDQIEI 103
Query: 109 QFVVWNGKHGYEREAPYDIIHVSPSYFTIPQK 140
+ DI+ +P YF P
Sbjct: 104 IEYDLKKITDLIPKERADIVTCNPPYFATPDT 135
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} Length = 170 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 3e-06
Identities = 27/147 (18%), Positives = 57/147 (38%), Gaps = 14/147 (9%)
Query: 40 MLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGN 99
+++ L+ + +LD+G+ +G +T L V + + A S + +
Sbjct: 13 LMDALEREGLEMKIVLDLGTSTGVITEQLR----KRNTVVSTD-LNIRALESHRGGNLVR 67
Query: 100 SELLD---QGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVG 156
++LL Q V VV+N Y + II + + +D + G ++ +
Sbjct: 68 ADLLCSINQESVDVVVFN--PPYVPDTDDPIIGGGYLGREVIDRFVDAVTVGMLYLLVIE 125
Query: 157 EPFKGQNLTIIDKLAD-GYTIVTTVVR 182
+ ++ +L + GY VR
Sbjct: 126 A---NRPKEVLARLEERGYGTRILKVR 149
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 45.4 bits (107), Expect = 3e-06
Identities = 22/167 (13%), Positives = 57/167 (34%), Gaps = 11/167 (6%)
Query: 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNID 96
+ LL+ +++P RIL +G G+ L+ L ++ G V V++ S +
Sbjct: 29 FSSFRALLEPELRPEDRILVLGCGNSALSYEL-FLGGFP-NVTSVDY-------SSVVVA 79
Query: 97 KGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVG 156
+ ++++ + + A +D++ + + D V V
Sbjct: 80 AMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVD 139
Query: 157 EPFKGQNLTIIDKLADGYTIVTTVVRGVRTNPLYRDRFQQKKYYTEL 203
+ + ++ + +T+ RT + + +
Sbjct: 140 QVLSEVSRVLVPG--GRFISMTSAAPHFRTRHYAQAYYGWSLRHATY 184
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} Length = 237 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 3e-06
Identities = 23/134 (17%), Positives = 50/134 (37%), Gaps = 21/134 (15%)
Query: 29 ADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELA 88
+ +S+ + Q++ + + + +++G +GY A +G++ ++ E
Sbjct: 50 SYMSTSPLAGQLMSFVLKLVNA-KKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAY 108
Query: 89 ESSIKNIDKGNSELLDQGRVQFVVWNG-------KHGYEREAPYDIIHV------SPSYF 135
E + I K E ++ F+ + G E E YD V Y
Sbjct: 109 EIGLPFIRKAGVE----HKINFIESDAMLALDNLLQGQESEGSYDFGFVDADKPNYIKYH 164
Query: 136 TIPQKLLDQLVPGG 149
++L+ + GG
Sbjct: 165 ---ERLMKLVKVGG 175
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 3e-06
Identities = 20/130 (15%), Positives = 51/130 (39%), Gaps = 10/130 (7%)
Query: 33 SPHIHAQMLELLKDKIK--PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAES 90
+++ Q L + +K +++D+G G G L + L E ++ GV+ + E
Sbjct: 10 KLNLNQQRLGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFE-QITGVDVSYSVLER 68
Query: 91 SIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDII-------HVSPSYFTIPQKLLD 143
+ + + + R+ + + +R + YD H+ + +K+L
Sbjct: 69 AKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLF 128
Query: 144 QLVPGGRMVM 153
+ +++
Sbjct: 129 EFTRPQTVIV 138
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 4e-06
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 35 HIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV 81
+ ++ + +K A +LD+G G GY T L+ + GV
Sbjct: 38 GSRSTIIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRTG---YKAVGV 81
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 6e-06
Identities = 25/136 (18%), Positives = 51/136 (37%), Gaps = 32/136 (23%)
Query: 33 SPHIHAQMLELLKD--KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAES 90
+ H H L L+ + + R+LDIG+G+G+ + GV+ E+
Sbjct: 2 AHHHHHHSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEM--- 55
Query: 91 SIKNIDKGNSELLDQG--RVQFVVWNGKHGYEREA-PYD-------IIHVSPSYFTIPQK 140
++ +S ++G V+F E+ P+ + +F+ +K
Sbjct: 56 ----VEVASSFAQEKGVENVRFQQGTA------ESLPFPDDSFDIITCRYAAHHFSDVRK 105
Query: 141 LLDQ----LVPGGRMV 152
+ + L GR +
Sbjct: 106 AVREVARVLKQDGRFL 121
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Length = 235 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 7e-06
Identities = 25/140 (17%), Positives = 50/140 (35%), Gaps = 19/140 (13%)
Query: 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSI 92
++ L+ P R L G G G+ + MA PE V G+ +++ES++
Sbjct: 49 QGRATPLIVHLVDTSSLPLGRALVPGCGGGHD---VVAMASPERFVVGL----DISESAL 101
Query: 93 KNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIP--------QKLLDQ 144
++ FV + + +D+I + I + + +
Sbjct: 102 AKANETYGSSPKAEYFSFVKEDV-FTWRPTELFDLIFDYVFFCAIEPEMRPAWAKSMYEL 160
Query: 145 LVPGGRMVM---PVGEPFKG 161
L P G ++ P+ + G
Sbjct: 161 LKPDGELITLMYPITDHVGG 180
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 8e-06
Identities = 9/50 (18%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 34 PHIHAQMLELLKD-KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
P + +++ + ++D+G G G T +A P ++ G +
Sbjct: 19 PSYPSDFYKMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSD 68
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 9e-06
Identities = 16/122 (13%), Positives = 41/122 (33%), Gaps = 28/122 (22%)
Query: 39 QMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV---EHVMELAESSIKNI 95
+ L + I+D G G+G+ L A ++Y + ++ + ++
Sbjct: 8 EYLPNIF--EGKKGVIVDYGCGNGFYCKYLLEFA---TKLYCIDINVIALKEVKEKFDSV 62
Query: 96 -DKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIPQKLLDQ----LVPGGR 150
+ + + V F+++ + H Q ++ + L GR
Sbjct: 63 ITLSDPKEIPDNSVDFILFA-----------NSFH----DMDDKQHVISEVKRILKDDGR 107
Query: 151 MV 152
++
Sbjct: 108 VI 109
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 9e-06
Identities = 25/128 (19%), Positives = 41/128 (32%), Gaps = 11/128 (8%)
Query: 33 SPHIHAQMLELLKDKIK--PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVME-LAE 89
P + Q +E I+ + ++D G GSG L L + GV+ + LA
Sbjct: 702 KPPLSKQRVEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLAR 761
Query: 90 SSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDII-------HVSPS-YFTIPQKL 141
++ K N E + + R DI H+ +K+
Sbjct: 762 AAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKV 821
Query: 142 LDQLVPGG 149
L P
Sbjct: 822 LSLFHPKL 829
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 9e-06
Identities = 31/168 (18%), Positives = 57/168 (33%), Gaps = 21/168 (12%)
Query: 22 SRQIGYGADISSPHIHAQ----MLELLKDK--IKPGARILDIGSGSGYLTACLAYMAGPE 75
+ GY D + + + + ++ G R+LD+G G G LA
Sbjct: 27 NLHFGYWEDAGADVSVDDATDRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARD-- 84
Query: 76 GRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYF 135
RV G+ ++ + + + RV F + +A +D + S
Sbjct: 85 VRVTGI----SISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDASFDAVWALESLH 140
Query: 136 TIPQK--LLDQ----LVPGGRMV---MPVGEPFKGQNLTIIDKLADGY 174
+P + L + L PGG + + P +G +D G
Sbjct: 141 HMPDRGRALREMARVLRPGGTVAIADFVLLAPVEGAKKEAVDAFRAGG 188
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} Length = 233 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 1e-05
Identities = 26/121 (21%), Positives = 45/121 (37%), Gaps = 18/121 (14%)
Query: 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97
+ L L P ARIL+IG+ GY +A A PE + +E E + K++
Sbjct: 43 MESLLHLLKMAAP-ARILEIGTAIGYSAIRMA-QALPEATIVSIERDERRYEEAHKHVKA 100
Query: 98 GNSELLDQGRVQFVVWNGKH---GYEREAPYDIIHV------SPSYFTIPQKLLDQLVPG 148
E R++ + + E +D++ + +F + PG
Sbjct: 101 LGLE----SRIELLFGDALQLGEKLELYPLFDVLFIDAAKGQYRRFF---DMYSPMVRPG 153
Query: 149 G 149
G
Sbjct: 154 G 154
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 1e-05
Identities = 19/128 (14%), Positives = 33/128 (25%), Gaps = 28/128 (21%)
Query: 39 QMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEH---VMELAESSIKNI 95
L K R+LDIG G G L GV+ +++ E +
Sbjct: 30 ARLRRYIPYFKGCRRVLDIGCGRGEF---LELCKEEGIESIGVDINEDMIKFCEGKFNVV 86
Query: 96 DKGNSELLDQGRVQFVVWNGKHGYEREAPYDII-------HVS-PSYFTIPQKLLDQLVP 147
E L + D + H+ F + ++
Sbjct: 87 KSDAIEYLKS--------------LPDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKY 132
Query: 148 GGRMVMPV 155
+V+
Sbjct: 133 SSYIVIES 140
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 1e-05
Identities = 25/134 (18%), Positives = 43/134 (32%), Gaps = 31/134 (23%)
Query: 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE--HVM-ELAESSIK 93
+ L ++ GA+IL++G G+GY + AG + V + + A
Sbjct: 30 RSATLTKFLGELPAGAKILELGCGAGYQAEAML-AAGFD--VDATDGSPELAAEA----- 81
Query: 94 NIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIP--------QKLLDQL 145
S L + + H + YD + +P + + L
Sbjct: 82 ------SRRLGRPVRTMLF----HQLDAIDAYDAVWAHACLLHVPRDELADVLKLIWRAL 131
Query: 146 VPGGRMV--MPVGE 157
PGG GE
Sbjct: 132 KPGGLFYASYKSGE 145
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 Length = 229 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 2e-05
Identities = 27/133 (20%), Positives = 46/133 (34%), Gaps = 20/133 (15%)
Query: 29 ADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELA 88
D AQ+L L I+ + LD+G+ +GY LA +GRV E +
Sbjct: 49 GDSMMTCEQAQLLANLARLIQA-KKALDLGTFTGYSALALALALPADGRVVTCEVDAQPP 107
Query: 89 ESSIKNIDKGNSELLDQGRVQFVVWNGK------HGYEREAPYDIIHV------SPSYFT 136
E + +E ++ + +D+ V +Y+
Sbjct: 108 ELGRPLWRQAEAE----HKIDLRLKPALETLDELLAAGEAGTFDVAVVDADKENCSAYY- 162
Query: 137 IPQKLLDQLVPGG 149
++ L L PGG
Sbjct: 163 --ERCLQLLRPGG 173
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 2e-05
Identities = 18/115 (15%), Positives = 38/115 (33%), Gaps = 22/115 (19%)
Query: 49 KPGARILDIGSGSGYLTACLAYMAGPEG-RVYGVEHVMELAESSIKNIDKGNSELLDQGR 107
+ L+IG +G T LA P R+ + + + I +
Sbjct: 50 GAVSNGLEIGCAAGAFTEKLA----PHCKRLTVI-------DVMPRAIGRACQRTKRWSH 98
Query: 108 VQFVVWNGKHGYEREAPYDII-------HV-SPSYF-TIPQKLLDQLVPGGRMVM 153
+ + + + +D+I ++ + T ++ L PGG +V
Sbjct: 99 ISWAATDI-LQFSTAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVF 152
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 2e-05
Identities = 23/157 (14%), Positives = 53/157 (33%), Gaps = 25/157 (15%)
Query: 29 ADISSPHIHAQMLELLK--DKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVME 86
P++ + L+ +L++ SG+GY T +++G RV ++ E
Sbjct: 23 DATFVPYMDSAAPAALERLRAGNIRGDVLELASGTGYWT---RHLSGLADRVTALDGSAE 79
Query: 87 -LAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIPQKLLDQ- 144
+AE+ +D V+F + + + +D + + +P +
Sbjct: 80 MIAEAGRHGLD----------NVEFRQQDL-FDWTPDRQWDAVFFAHWLAHVPDDRFEAF 128
Query: 145 -------LVPGGRMVMPVGEPFKGQNLTIIDKLADGY 174
+ PGG + + + D +
Sbjct: 129 WESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVA 165
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* Length = 247 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 2e-05
Identities = 24/134 (17%), Positives = 46/134 (34%), Gaps = 21/134 (15%)
Query: 29 ADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELA 88
+++ Q L +L I ++IG +GY A +G++ ++ E
Sbjct: 59 NIMTTSADEGQFLSMLLKLINA-KNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENY 117
Query: 89 ESSIKNIDKGNSELLDQGRVQFVVWNG-------KHGYEREAPYDIIHV------SPSYF 135
E + I K + ++ F + YD I V +Y
Sbjct: 118 ELGLPVIKKAGVD----HKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYH 173
Query: 136 TIPQKLLDQLVPGG 149
++L+D + GG
Sbjct: 174 ---KRLIDLVKVGG 184
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} Length = 248 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 2e-05
Identities = 26/130 (20%), Positives = 44/130 (33%), Gaps = 17/130 (13%)
Query: 29 ADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELA 88
Q L LL + RIL+IG+ GY T +A +G++ +E A
Sbjct: 43 PAHDVAANQGQFLALLVRLTQA-KRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHA 101
Query: 89 ESSIKNIDKGNSELLDQGRVQFVVWNGK---HGYEREAPYDIIHV------SPSYFTIPQ 139
+ + +N+ + RV +D+I + +P Y +
Sbjct: 102 QVARENLQLAGVD----QRVTLREGPALQSLESLGECPAFDLIFIDADKPNNPHYL---R 154
Query: 140 KLLDQLVPGG 149
L PG
Sbjct: 155 WALRYSRPGT 164
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} Length = 242 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 2e-05
Identities = 10/69 (14%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 29 ADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELA 88
A++ AQ +++L + ++L++G+ +GY ++ +G+V +
Sbjct: 40 ANMQVAPEQAQFMQMLIRLTRA-KKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWT 98
Query: 89 ESSIKNIDK 97
+ + +
Sbjct: 99 KHAHPYWRE 107
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} Length = 239 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 2e-05
Identities = 25/140 (17%), Positives = 46/140 (32%), Gaps = 23/140 (16%)
Query: 29 ADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELA 88
A++ Q L +L RI++IG+ +GY + C A +G++ + E
Sbjct: 40 ANMQISPEEGQFLNILTKISGA-KRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWT 98
Query: 89 ESSIKNIDKGN------------SELLDQ-GRVQFVVWNGKHGYEREAPYDIIHV----- 130
+ K + E L + + D+ +
Sbjct: 99 NVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKE 158
Query: 131 -SPSYFTIPQKLLDQLVPGG 149
P+Y+ +L L PGG
Sbjct: 159 NYPNYY---PLILKLLKPGG 175
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} PDB: 3id5_B* 3pla_E* Length = 232 | Back alignment and structure |
|---|
Score = 42.7 bits (100), Expect = 2e-05
Identities = 12/44 (27%), Positives = 24/44 (54%)
Query: 40 MLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEH 83
+ L + I+ G ++L +G+ SG + ++ + G+ YGVE
Sbjct: 66 LKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEF 109
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245 | Back alignment and structure |
|---|
Score = 42.7 bits (100), Expect = 3e-05
Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 3/52 (5%)
Query: 30 DISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV 81
D + L + P ++D G+G T L+ P RV G+
Sbjct: 36 DANVERAVVVDLPRFELLFNPELPLIDFACGNGTQTKFLS-QFFP--RVIGL 84
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} Length = 225 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 4e-05
Identities = 21/133 (15%), Positives = 50/133 (37%), Gaps = 20/133 (15%)
Query: 29 ADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELA 88
+ + AQ+L LL ++ +++DIG+ +GY + +G + + +
Sbjct: 44 YAMQTAPEQAQLLALLVKLMQA-KKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKST 102
Query: 89 ESSIKNIDKGNSELLDQGRVQFVVWNGK------HGYEREAPYDIIHV------SPSYFT 136
+ + +K ++ + K + YD+I++ + Y+
Sbjct: 103 ALAKEYWEKAGLS----DKIGLRLSPAKDTLAELIHAGQAWQYDLIYIDADKANTDLYY- 157
Query: 137 IPQKLLDQLVPGG 149
++ L L GG
Sbjct: 158 --EESLKLLREGG 168
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 4e-05
Identities = 22/137 (16%), Positives = 42/137 (30%), Gaps = 23/137 (16%)
Query: 27 YGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVME 86
Y + +H M+ +PG +L++GS G + + + VE E
Sbjct: 20 YAYNFDFDVMHPFMVRAFTPFFRPG-NLLELGSFKGDF---TSRLQEHFNDITCVEASEE 75
Query: 87 LAESSIKNIDKGNSELLDQGRVQFVVWNGK-HGYEREAPYDII-------HVSPSYFTIP 138
+ + G + + + YD I H+ +
Sbjct: 76 AISHAQGRLKDG-----------ITYIHSRFEDAQLPRRYDNIVLTHVLEHIDDPVALLK 124
Query: 139 QKLLDQLVPGGRMVMPV 155
+ D L GGR+ +
Sbjct: 125 RINDDWLAEGGRLFLVC 141
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 5e-05
Identities = 25/128 (19%), Positives = 45/128 (35%), Gaps = 23/128 (17%)
Query: 40 MLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGN 99
+L + + R+LD+G G G+L +A GV + +D
Sbjct: 44 ILLAILGR--QPERVLDLGCGEGWLL---RALADRGIEAVGV-------DGDRTLVDAAR 91
Query: 100 SELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTI----PQKLLDQ----LVPGGRM 151
+ + + + YD+I + F + +LL LVPGG +
Sbjct: 92 AAGAGEVHLASYAQLAEAKVPVGKDYDLIC---ANFALLHQDIIELLSAMRTLLVPGGAL 148
Query: 152 VMPVGEPF 159
V+ P+
Sbjct: 149 VIQTLHPW 156
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* Length = 223 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 5e-05
Identities = 32/132 (24%), Positives = 49/132 (37%), Gaps = 19/132 (14%)
Query: 29 ADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELA 88
+ L+LL IL+IG+ GY T LA GRV +E + A
Sbjct: 38 PAHDVSPTQGKFLQLLVQIQGA-RNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHA 96
Query: 89 ESSIKNIDKGNSELLDQGRVQFVVWNGKH-----GYEREAPYDIIHV------SPSYFTI 137
+ + NI++ N RV+ E+ P+D I + +P+YF
Sbjct: 97 DIARSNIERANLN----DRVEVRTGLALDSLQQIENEKYEPFDFIFIDADKQNNPAYF-- 150
Query: 138 PQKLLDQLVPGG 149
+ L PG
Sbjct: 151 -EWALKLSRPGT 161
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 6e-05
Identities = 19/135 (14%), Positives = 46/135 (34%), Gaps = 17/135 (12%)
Query: 36 IHAQMLELLKD--KIKPGARILDIGSGSGYLTAC-LAYMAGPEGRVYGVEHVMELAESSI 92
+ ++ ++ K +IL IG G+G + L+ + V V+E + I
Sbjct: 36 MDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQI 95
Query: 93 KNIDKGNSELLDQGRVQFVV--------WNGKHGYEREAPYDIIHVSPSYFTIP------ 138
+ ++ + V+F + + +D IH+ + +
Sbjct: 96 AKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATL 155
Query: 139 QKLLDQLVPGGRMVM 153
+ L +M++
Sbjct: 156 KFFHSLLGTNAKMLI 170
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 6e-05
Identities = 23/127 (18%), Positives = 41/127 (32%), Gaps = 15/127 (11%)
Query: 35 HIHAQMLELLKD-KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIK 93
EL ++ A+ LD+G+G G L G + + +A K
Sbjct: 66 TDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGV--SIDCL----NIAPVQNK 119
Query: 94 NIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDII-------HVSPSYFTIPQKLLDQLV 146
++ N++ + + + YD I H P + Q+ L
Sbjct: 120 RNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDAFLHS-PDKLKVFQECARVLK 178
Query: 147 PGGRMVM 153
P G M +
Sbjct: 179 PRGVMAI 185
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 6e-05
Identities = 32/140 (22%), Positives = 50/140 (35%), Gaps = 31/140 (22%)
Query: 30 DISSPHIHAQMLELLKDK--IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV---EHV 84
I+ + E + ++ I G +DIGSG G L+ LA + + + +H+
Sbjct: 22 KTLFAPIYPIIAENIINRFGITAG-TCIDIGSGPGALSIALAKQSD--FSIRALDFSKHM 78
Query: 85 MELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPY-----DIIHVSPSYFTIP- 138
E+A KNI N R+Q V G P D+I S F
Sbjct: 79 NEIAL---KNIADANLN----DRIQIV-----QGDVHNIPIEDNYADLIVSRGSVFFWED 126
Query: 139 -QKLLDQ----LVPGGRMVM 153
+ L GG+ +
Sbjct: 127 VATAFREIYRILKSGGKTYI 146
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 7e-05
Identities = 23/124 (18%), Positives = 42/124 (33%), Gaps = 23/124 (18%)
Query: 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNID 96
+ +LE + +K +L+ G G+G LT + VYG+ E S +
Sbjct: 34 YEDILEDVVNK--SFGNVLEFGVGTGNLT---NKLLLAGRTVYGI-------EPSREMRM 81
Query: 97 KGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIP--------QKLLDQLVPG 148
+L + +E D I + ++ + K L G
Sbjct: 82 IAKEKL--PKEFSITEGDFLS-FEVPTSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKG 138
Query: 149 GRMV 152
G++V
Sbjct: 139 GKIV 142
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} Length = 205 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 9e-05
Identities = 24/148 (16%), Positives = 51/148 (34%), Gaps = 25/148 (16%)
Query: 40 MLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELA-ESSIKNIDKG 98
+ ++ + + D+G+GSG L A A+ G V + + + + ++ +N
Sbjct: 50 AMLGIERAMVKPLTVADVGTGSGIL-AIAAHKLGA-KSVLATD-ISDESMTAAEENAAL- 105
Query: 99 NSELLDQGRVQFVVWNGKHGYEREAPYDI----IHVSPSYFTIPQKLLDQLVPGGRMVM- 153
N G + + + +D+ I IPQ L L G+++
Sbjct: 106 N------GIYDIALQKTSLLADVDGKFDLIVANILAEILLDLIPQ-LDSHLNEDGQVIFS 158
Query: 154 --------PVGEPFKGQNLTIIDKLADG 173
+ + + I K+ G
Sbjct: 159 GIDYLQLPKIEQALAENSFQIDLKMRAG 186
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 9e-05
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Query: 32 SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAE 89
I ++ LL + G+ I DIG+G+G + L A VY VE + + +
Sbjct: 18 PDIRIVNAIINLLN--LPKGSVIADIGAGTGGYSVAL---ANQGLFVYAVEPSIVMRQ 70
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} Length = 375 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 9e-05
Identities = 24/117 (20%), Positives = 46/117 (39%), Gaps = 17/117 (14%)
Query: 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELA-ESSIKNIDKGNSELLDQGR 107
I+D+G G+G + L P+ +V V+ +A SS N++ E LD R
Sbjct: 221 NLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVD-ESPMAVASSRLNVETNMPEALD--R 276
Query: 108 VQFVVWNGKHGYEREAPYDII------HVSPSY-FTIPQKLLDQ----LVPGGRMVM 153
+F++ N G E ++ + H + + ++ L G + +
Sbjct: 277 CEFMINNALSGVE-PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYI 332
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} Length = 221 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 1e-04
Identities = 17/144 (11%), Positives = 38/144 (26%), Gaps = 19/144 (13%)
Query: 19 RIKSRQIGYGADISSPHIHAQMLELLKDKIKPGA--RILDIGSGSGYLTACLAYMAGPEG 76
R + + G + + Q+L L + I +G + +
Sbjct: 26 REDAAEFG---LPAPDEMTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNT 82
Query: 77 RVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYER--EAPYDIIHV---- 130
+ ++ E + + RV+F++ R Y ++
Sbjct: 83 TLTCIDPESEHQRQAKALFREAG---YSPSRVRFLLSRPLDVMSRLANDSYQLVFGQVSP 139
Query: 131 --SPSYFTIPQKLLDQLVPGGRMV 152
+ L GG +V
Sbjct: 140 MDLKALV---DAAWPLLRRGGALV 160
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} Length = 232 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 1e-04
Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 1/69 (1%)
Query: 29 ADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELA 88
A + AQ L LL ++L+IG GY +A P+G++ +
Sbjct: 52 APMQISPEQAQFLGLLISLTGA-KQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNAT 110
Query: 89 ESSIKNIDK 97
+ K K
Sbjct: 111 AIAKKYWQK 119
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 1e-04
Identities = 8/43 (18%), Positives = 14/43 (32%), Gaps = 3/43 (6%)
Query: 39 QMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV 81
+L + + D+G G G T L + G+
Sbjct: 24 DLLAQVPLE--RVLNGYDLGCGPGNSTELLTDRY-GVNVITGI 63
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 1e-04
Identities = 24/167 (14%), Positives = 58/167 (34%), Gaps = 44/167 (26%)
Query: 33 SPHIHAQ------MLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV---EH 83
+ IHA+ ++++ +K +LD+ +G G++ A +V E
Sbjct: 16 TSQIHAKGSDLAKLMQIAA--LKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTED 70
Query: 84 VMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREA-PYD-------IIHVSPSYF 135
++++A + I+ V++V + E P+ ++ +F
Sbjct: 71 ILKVARAFIEGNGHQQ--------VEYVQGDA------EQMPFTDERFHIVTCRIAAHHF 116
Query: 136 TIPQKLLDQ----LVPGGRMVM----PVGEPFKGQNLTIIDKLADGY 174
P + + L GG++++ ++K D
Sbjct: 117 PNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYS 163
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* Length = 381 | Back alignment and structure |
|---|
Score = 41.1 bits (96), Expect = 1e-04
Identities = 37/163 (22%), Positives = 63/163 (38%), Gaps = 23/163 (14%)
Query: 5 DRKNFFTRVVNEPYRIKSRQIGYGA---DISSPHIHAQMLELLKDKIKPGARILDIGSGS 61
+ F R++ Y + A D +S + + E L + G ++LD+G+G
Sbjct: 185 LWRAFSARILGAEYTFHHLPGVFSAGKVDPASLLLLEALQERLGPEGVRGRQVLDLGAGY 244
Query: 62 GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYER 121
G LT LA M V GVE + S K ++ + + Q + +
Sbjct: 245 GALTLPLARMG---AEVVGVEDDLASVLSLQKGLEA------NALKAQALHSDVDEALTE 295
Query: 122 EAPYDIIHVSPSY-------FTIPQKLLDQ----LVPGGRMVM 153
EA +DII +P + + Q ++ L PGG +
Sbjct: 296 EARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFL 338
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 40.3 bits (94), Expect = 1e-04
Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 12/77 (15%)
Query: 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV-------EHVMELAE 89
+ LL +K ++LD+ G G + L V GV E A+
Sbjct: 25 IETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYG---FEVVGVDISEDMIRKAREYAK 81
Query: 90 SSIKNID--KGNSELLD 104
S N++ G++ L
Sbjct: 82 SRESNVEFIVGDARKLS 98
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 Length = 200 | Back alignment and structure |
|---|
Score = 40.4 bits (94), Expect = 1e-04
Identities = 19/87 (21%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Query: 33 SPHIHAQM-LELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE---HVMELA 88
A +E+ D G ++D G+G+G L AC +Y+ G E V + +E A
Sbjct: 33 DASTAAYFLIEIYNDGNIGGRSVIDAGTGNGIL-ACGSYLLGAE-SVTAFDIDPDAIETA 90
Query: 89 ESSIKNIDKGNSELLD-QGRVQFVVWN 114
+ + ++ +++ + G+ + N
Sbjct: 91 KRNCGGVNFMVADVSEISGKYDTWIMN 117
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} Length = 343 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 1e-04
Identities = 26/127 (20%), Positives = 48/127 (37%), Gaps = 26/127 (20%)
Query: 40 MLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELA-ESSIKNIDKG 98
+L L ++LD+G G+G L+ A + P+ R+ + V A E+S
Sbjct: 188 LLSTLTPH--TKGKVLDVGCGAGVLSVAFARHS-PKIRLTLCD-VSAPAVEASRAT---- 239
Query: 99 NSELLDQGRVQFVVWNGKHGYER-EAPYDII------HVS-PSYFTIPQKLLDQ----LV 146
L V+ V+ + + + +D+I H + Q L+ L
Sbjct: 240 ----LAANGVEGEVFAS-NVFSEVKGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLN 294
Query: 147 PGGRMVM 153
GG + +
Sbjct: 295 SGGELRI 301
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 39.8 bits (93), Expect = 2e-04
Identities = 22/127 (17%), Positives = 40/127 (31%), Gaps = 24/127 (18%)
Query: 42 ELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV---EHVMELAESSIKNID-- 96
L+ GA+ILD G G G + L+ G V G +++ A+
Sbjct: 38 RLIDAMAPRGAKILDAGCGQGRIGGYLS-KQGH--DVLGTDLDPILIDYAKQDFPEARWV 94
Query: 97 KGNSELLDQGRVQF-VVWNGKHGYEREAPYDIIHVSPSYFTIPQKLLDQ----LVPGGRM 151
G+ + F ++ + +++ + L L GR
Sbjct: 95 VGDLSVDQISETDFDLIV---------SAGNVMGFLAE--DGREPALANIHRALGADGRA 143
Query: 152 VMPVGEP 158
V+ G
Sbjct: 144 VIGFGAG 150
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A Length = 227 | Back alignment and structure |
|---|
Score = 40.0 bits (93), Expect = 2e-04
Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 36 IHAQMLELLKD-KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEH 83
+ A ++ LK+ IKPG +L +G SG + ++ + G EG+++G+E
Sbjct: 58 LGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEF 106
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} Length = 354 | Back alignment and structure |
|---|
Score = 40.5 bits (95), Expect = 2e-04
Identities = 28/139 (20%), Positives = 48/139 (34%), Gaps = 21/139 (15%)
Query: 34 PHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIK 93
P + +L L +PG R+LD +GSG + A GP VY + + + +
Sbjct: 189 PVLAQALLRLAD--ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLARE 246
Query: 94 NIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDII--------------HVSPSYFTIPQ 139
++F+ + +H D I + Y+ +
Sbjct: 247 AALASGLS-----WIRFLRADARHLPRFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLR 301
Query: 140 KLLDQLVPGGRMVMPVGEP 158
L L PGGR+ + P
Sbjct: 302 GALALLPPGGRVALLTLRP 320
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4er3_A* 3sr4_A* Length = 438 | Back alignment and structure |
|---|
Score = 40.2 bits (93), Expect = 2e-04
Identities = 32/158 (20%), Positives = 60/158 (37%), Gaps = 20/158 (12%)
Query: 10 FTRVVNEPYRIKSRQIG----YGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLT 65
+ V +P ++ + + YG +S + AQM++ +K + +D+GSG G +
Sbjct: 133 YNHSVTDPEKLNNYEPFSPEVYGE--TSFDLVAQMIDEIK--MTDDDLFVDLGSGVGQVV 188
Query: 66 ACLAYMAGPEGRVYGVE---HVMELAESSIKNIDKGNSEL-LDQGRVQFVV--WNGKHGY 119
+A + YGVE + AE+ + K + +
Sbjct: 189 LQVAAATNCK-HHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWR 247
Query: 120 EREAPYDIIHVSPSYFTIP-----QKLLDQLVPGGRMV 152
ER A +I V+ F ++ + GGR+V
Sbjct: 248 ERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIV 285
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 39.8 bits (93), Expect = 3e-04
Identities = 28/134 (20%), Positives = 51/134 (38%), Gaps = 27/134 (20%)
Query: 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV----EHVMELAESSI 92
H + L++ +K R+LD+G G+G + ++ V V E + E +
Sbjct: 41 HRLIGSFLEEYLKNPCRVLDLGGGTGKWS---LFLQERGFEVVLVDPSKEMLEVAREKGV 97
Query: 93 KNIDKGNSELL--DQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIPQKLLDQ----LV 146
KN+ + +E L G + V+ A D++ Y K + LV
Sbjct: 98 KNVVEAKAEDLPFPSGAFEAVL----------ALGDVLS----YVENKDKAFSEIRRVLV 143
Query: 147 PGGRMVMPVGEPFK 160
P G ++ V +
Sbjct: 144 PDGLLIATVDNFYT 157
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269 | Back alignment and structure |
|---|
Score = 39.9 bits (93), Expect = 3e-04
Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 19/122 (15%)
Query: 35 HIHAQMLELLKDKIK-PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIK 93
+ ++ L++++ +LDIG G GY T A A PE +G+ ++++ +IK
Sbjct: 69 PLRDAIVAQLRERLDDKATAVLDIGCGEGYYTHAFA-DALPEITTFGL----DVSKVAIK 123
Query: 94 NIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIPQK---LLDQLVPGGR 150
K +V F V + + D I + P K L + PGG
Sbjct: 124 AAAKRY------PQVTFCVASSHRLPFSDTSMDAII---RIYA-PCKAEELARVVKPGGW 173
Query: 151 MV 152
++
Sbjct: 174 VI 175
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* Length = 318 | Back alignment and structure |
|---|
Score = 39.9 bits (94), Expect = 3e-04
Identities = 31/176 (17%), Positives = 51/176 (28%), Gaps = 55/176 (31%)
Query: 38 AQM--LELLKDK--IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVM-------- 85
AQ ++L DK +KPG +LDIG G G + + V +V+
Sbjct: 74 AQYAKVDLNLDKLDLKPGMTLLDIGCGWGTT---MRRAV----ERFDV-NVIGLTLSKNQ 125
Query: 86 -ELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-EREAPYDII-------HVS----P 132
E + +ID +V G+ + P D I H
Sbjct: 126 HARCEQVLASID-----TNRSRQVLL------QGWEDFAEPVDRIVSIEAFEHFGHENYD 174
Query: 133 SYFTIPQKLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYTIVTTVVRGVRTNP 188
+F ++ + + GRM + Q+ R
Sbjct: 175 DFF---KRCFNIMPADGRMTV--------QSSVSYHPYEMAARGKKLSFETARFIK 219
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} Length = 183 | Back alignment and structure |
|---|
Score = 39.1 bits (92), Expect = 3e-04
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97
A + L + ++D+G GSG +T +A VY ++++ E + +N+ K
Sbjct: 25 AVSIGKLN--LNKDDVVVDVGCGSGGMTVEIAKRC---KFVYAIDYLDGAIEVTKQNLAK 79
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 Length = 194 | Back alignment and structure |
|---|
Score = 39.2 bits (92), Expect = 3e-04
Identities = 27/152 (17%), Positives = 59/152 (38%), Gaps = 22/152 (14%)
Query: 40 MLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELA-ESSIKNIDKG 98
++E + ILD+G G G + LA + + A + + +NI
Sbjct: 44 LVENVVVD--KDDDILDLGCGYGVIGIALA-DEVKS--TTMAD-INRRAIKLAKENIKLN 97
Query: 99 NSELLDQGRVQFVVWNGKHGYEREAPYDIIHVS-PSY---FTIPQKLLDQ----LVPGGR 150
N LD ++ V + + + Y+ I ++ P + +++++ L G
Sbjct: 98 N---LDNYDIRVVHSDLYENVK-DRKYNKI-ITNPPIRAGKEVLHRIIEEGKELLKDNGE 152
Query: 151 MVMPVGEPFKGQNLTIIDKLADGYTIVTTVVR 182
+ + V + +G ++ + D + V TV
Sbjct: 153 IWV-VIQTKQGAK-SLAKYMKDVFGNVETVTI 182
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* Length = 254 | Back alignment and structure |
|---|
Score = 39.2 bits (92), Expect = 3e-04
Identities = 35/149 (23%), Positives = 61/149 (40%), Gaps = 28/149 (18%)
Query: 40 MLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELA-ESSIKNIDKG 98
L+ L ++PG ++LD+G+GSG L A A G G+ GV+ + + + N +
Sbjct: 110 ALKALARHLRPGDKVLDLGTGSGVL-AIAAEKLG--GKALGVD-IDPMVLPQAEANAKR- 164
Query: 99 NSELLDQGRVQFVVWNGKHG-YEREAPYDI----IHVSPSYFTIPQKLLDQLVPGGRMVM 153
N V+ G P+D+ ++ P+ + LVPGGR ++
Sbjct: 165 N-------GVRPRFLEGSLEAALPFGPFDLLVANLYAELHAALAPR-YREALVPGGRALL 216
Query: 154 ---------PVGEPFKGQNLTIIDKLADG 173
V E G +++ A+G
Sbjct: 217 TGILKDRAPLVREAMAGAGFRPLEEAAEG 245
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 39.3 bits (91), Expect = 4e-04
Identities = 16/37 (43%), Positives = 25/37 (67%)
Query: 47 KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEH 83
IKPGA++L +G+ SG + ++ + GP+G VY VE
Sbjct: 74 HIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEF 110
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211 | Back alignment and structure |
|---|
Score = 39.0 bits (91), Expect = 4e-04
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Query: 35 HIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
++ A+ LK + PG +L++G+G+GY L P + GVE
Sbjct: 21 YVIAEEERALKGLLPPGESLLEVGAGTGYWLRRL-----PYPQKVGVE 63
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235 | Back alignment and structure |
|---|
Score = 39.0 bits (91), Expect = 4e-04
Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 9/79 (11%)
Query: 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV---EHVMELAESSIK 93
+ ++ + ++ ILDIG GSG ++ +A V G+ + LAE
Sbjct: 17 SLDLYPIIHNYLQEDDEILDIGCGSGKIS---LELASKGYSVTGIDINSEAIRLAE---T 70
Query: 94 NIDKGNSELLDQGRVQFVV 112
G+ +F V
Sbjct: 71 AARSPGLNQKTGGKAEFKV 89
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} Length = 232 | Back alignment and structure |
|---|
Score = 38.8 bits (91), Expect = 5e-04
Identities = 22/125 (17%), Positives = 47/125 (37%), Gaps = 17/125 (13%)
Query: 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSI 92
+ +++ L IL+IG+ GY + A + + V +E + + +
Sbjct: 55 VDRLTLDLIKQLIRMNNV-KNILEIGTAIGYSSMQFASI-SDDIHVTTIERNETMIQYAK 112
Query: 93 KNIDKGNSELLDQGRVQFVVWNGKHGYER--EAPYDIIHV------SPSYFTIPQKLLDQ 144
+N+ + E +V+ + N +E + YD+I + S +F +
Sbjct: 113 QNLATYHFE----NQVRIIEGNALEQFENVNDKVYDMIFIDAAKAQSKKFF---EIYTPL 165
Query: 145 LVPGG 149
L G
Sbjct: 166 LKHQG 170
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202 | Back alignment and structure |
|---|
Score = 38.3 bits (89), Expect = 6e-04
Identities = 21/112 (18%), Positives = 35/112 (31%), Gaps = 19/112 (16%)
Query: 50 PGARILDIGSGSGYLTACLAYMAGPEG-RVYGVEHVMELAESSIKNIDKGNSELLDQG-R 107
P +IL + G G LA G V V + S + K ++G +
Sbjct: 29 PQGKILCLAEGEGRNACFLA----SLGYEVTAV-------DQSSVGLAKAKQLAQEKGVK 77
Query: 108 VQFVVWNGKHGYEREAPYDIIHVSPSYFTIP------QKLLDQLVPGGRMVM 153
+ V N ++ I + K+ L PGG ++
Sbjct: 78 ITTVQSNLADFDIVADAWEGIVSIFCHLPSSLRQQLYPKVYQGLKPGGVFIL 129
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} Length = 376 | Back alignment and structure |
|---|
Score = 39.0 bits (90), Expect = 6e-04
Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 22/102 (21%)
Query: 32 SSPHIHAQMLELLKDKIK---------------PGARILDIGSGSGYLTACLAYMAGPEG 76
S + ML D+++ G +LD+G+GSG L A AG
Sbjct: 33 SFLYHQKDML---SDRVRMDAYFNAVFQNKHHFEGKTVLDVGTGSGILAIWSA-QAGAR- 87
Query: 77 RVYGVEH--VMELAESSIKNIDKGNSELLDQGRVQFVVWNGK 116
+VY VE + + A + +K + + + +G V+ + K
Sbjct: 88 KVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEK 129
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266 | Back alignment and structure |
|---|
Score = 38.6 bits (90), Expect = 6e-04
Identities = 23/137 (16%), Positives = 50/137 (36%), Gaps = 18/137 (13%)
Query: 26 GYGADISSPHIHAQMLELLKD-KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHV 84
+G + S ++L D ++ +++LDIGSG G + G +G++
Sbjct: 30 IFGENYISSGGLEATKKILSDIELNENSKVLDIGSGLGGGCMYINEKYGAH--THGIDI- 86
Query: 85 MELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDII-------HV-SPSYFT 136
++ N + ++ F + E +D+I + +
Sbjct: 87 ------CSNIVNMANERVSGNNKIIFEANDILTKEFPENNFDLIYSRDAILALSLENKNK 140
Query: 137 IPQKLLDQLVPGGRMVM 153
+ QK L P G +++
Sbjct: 141 LFQKCYKWLKPTGTLLI 157
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* Length = 287 | Back alignment and structure |
|---|
Score = 38.7 bits (91), Expect = 6e-04
Identities = 23/139 (16%), Positives = 43/139 (30%), Gaps = 45/139 (32%)
Query: 38 AQM--LELLKDK--IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHV--------M 85
AQ+ ++L K ++PG +LD+G G G + Y V V
Sbjct: 48 AQIAKIDLALGKLGLQPGMTLLDVGCGWGAT---MMRAV----EKYDVNVVGLTLSKNQA 100
Query: 86 ELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-EREAPYDII-------HVS----PS 133
+ + + + ++ G+ + + P D I H +
Sbjct: 101 NHVQQLVA-------NSENLRSKRVLL----AGWEQFDEPVDRIVSIGAFEHFGHERYDA 149
Query: 134 YFTIPQKLLDQLVPGGRMV 152
+F L G M+
Sbjct: 150 FF---SLAHRLLPADGVML 165
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 204 | |||
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.94 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.94 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.93 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.93 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.93 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.92 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.89 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.89 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.77 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.75 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.74 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.74 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.72 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.72 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.71 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.71 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.71 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.7 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.7 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.69 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.69 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.69 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.69 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.69 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.69 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.68 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.68 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.68 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.67 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.67 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.67 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.67 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.67 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.67 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.67 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.67 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.67 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.66 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.66 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.66 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.66 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.66 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.66 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.66 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.66 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.66 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.66 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.65 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.65 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.65 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.65 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.65 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.65 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.64 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.64 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.64 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.64 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.64 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.64 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.64 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.64 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.64 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.64 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.64 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.64 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.63 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.63 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.63 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.63 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.63 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.63 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.63 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.63 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.63 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.63 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.63 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.63 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.63 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.63 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.62 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.62 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.62 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.62 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.62 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.62 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.62 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.62 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.62 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.61 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.61 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.61 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.61 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.61 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.61 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.61 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.61 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.61 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.61 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.6 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.6 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.6 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.6 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.6 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.6 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.6 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.6 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.6 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.6 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.6 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.6 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.6 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.6 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.6 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.6 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.6 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.6 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.59 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.59 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.59 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.59 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.59 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.59 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.59 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.59 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.59 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.59 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.59 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.59 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.58 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.58 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.58 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.58 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.58 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.58 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.57 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.57 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.57 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.57 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.57 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.56 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.56 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.56 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.56 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.56 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.56 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.56 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.56 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.56 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.56 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.56 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.56 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.55 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.55 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.55 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.55 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.55 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.55 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.54 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.53 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.53 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.53 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.53 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.53 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.53 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.53 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.52 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.51 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.51 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.51 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.51 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.51 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.5 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.5 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.5 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.5 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.5 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 99.5 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.49 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.49 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.49 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.49 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.48 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.48 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.48 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.48 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.48 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.48 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.48 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 99.47 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.47 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.47 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.47 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.47 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.46 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.46 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.46 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.46 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.46 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.46 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.45 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.45 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.45 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.45 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.44 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 99.44 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.44 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.44 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.44 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.43 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.43 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.43 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.43 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.43 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.43 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.43 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 99.43 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 99.43 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.43 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.42 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.42 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.42 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 99.42 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.4 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.4 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 99.4 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.39 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.38 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.38 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.38 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.37 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.37 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 99.36 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.35 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 99.35 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.35 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.35 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 99.34 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.34 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 99.34 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 99.34 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 99.33 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 99.33 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.32 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.32 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 99.31 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 99.31 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.31 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 99.31 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.3 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.29 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.29 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.28 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 99.28 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.28 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 99.27 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.25 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.25 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.25 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.24 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 99.24 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.24 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 99.23 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.23 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 99.21 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 99.2 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.18 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 99.17 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 99.17 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.16 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 99.15 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 99.14 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 99.12 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 99.11 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 99.1 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 99.07 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.07 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 99.05 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.98 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.83 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.8 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 98.74 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.73 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.68 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.68 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 98.66 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 98.64 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 98.58 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.54 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 98.42 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 98.37 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.37 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 98.35 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 98.25 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 98.23 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 98.22 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.22 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 98.19 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 98.16 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 98.08 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 97.81 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 97.8 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 97.73 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 97.28 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 97.26 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 97.22 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 97.21 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 97.18 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 97.17 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 97.16 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 97.14 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 97.14 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 97.13 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 97.12 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 97.12 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 97.01 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 97.0 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 97.0 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 96.95 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 96.93 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 96.93 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 96.92 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 96.89 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 96.86 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 96.83 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 96.81 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 96.78 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 96.78 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 96.75 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 96.69 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 96.69 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 96.68 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 96.63 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 96.62 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 96.61 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 96.59 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 96.58 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 96.56 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 96.55 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 96.54 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 96.54 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 96.53 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 96.47 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 96.44 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 96.42 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 96.42 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 96.35 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 96.27 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 96.25 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 96.22 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 96.19 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 96.19 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 96.17 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 96.17 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 96.08 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 96.08 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 96.06 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 96.04 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 96.02 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 96.01 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 95.95 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 95.92 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 95.85 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 95.84 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 95.77 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 95.73 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 95.64 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 95.62 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 95.61 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 95.59 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 95.55 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 95.55 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 95.32 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 95.28 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 95.23 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 95.2 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 95.17 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 95.15 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 95.14 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 95.05 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 95.03 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 94.99 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 94.96 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 94.94 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 94.89 | |
| 1h2b_A | 359 | Alcohol dehydrogenase; oxidoreductase, archaea, hy | 94.86 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 94.82 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 94.8 | |
| 4f3n_A | 432 | Uncharacterized ACR, COG1565 superfamily; structur | 94.66 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 94.07 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 94.04 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 93.97 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 93.73 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 93.73 | |
| 1gu7_A | 364 | Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s | 93.65 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 93.63 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 93.55 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 93.39 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 93.35 | |
| 1zsy_A | 357 | Mitochondrial 2-enoyl thioester reductase; medium- | 93.22 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 93.01 | |
| 4a27_A | 349 | Synaptic vesicle membrane protein VAT-1 homolog-L; | 93.01 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 92.76 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 92.65 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 92.64 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 92.59 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 92.01 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 92.01 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 92.01 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 91.97 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 91.42 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 91.22 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 91.1 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 91.05 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 91.04 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 90.95 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 90.87 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 90.83 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 90.57 | |
| 3swr_A | 1002 | DNA (cytosine-5)-methyltransferase 1; epigenetics, | 90.52 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 90.33 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 89.86 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 89.76 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 89.65 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 89.58 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 89.43 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 89.32 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 89.01 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 89.0 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 88.92 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 88.72 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 88.58 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 88.08 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 88.02 | |
| 4ft4_B | 784 | DNA (cytosine-5)-methyltransferase 1; chromodomain | 87.79 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 87.72 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 87.63 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 87.47 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 87.39 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 87.35 | |
| 3iht_A | 174 | S-adenosyl-L-methionine methyl transferase; YP_165 | 87.28 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 87.26 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 87.13 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 87.03 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 86.95 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 86.93 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 86.83 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 86.79 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 86.69 | |
| 3iup_A | 379 | Putative NADPH:quinone oxidoreductase; YP_296108.1 | 86.62 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 86.53 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 85.89 | |
| 3oec_A | 317 | Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; | 85.86 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 85.71 | |
| 3av4_A | 1330 | DNA (cytosine-5)-methyltransferase 1; CXXC-type zi | 85.54 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 85.53 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 85.27 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 85.25 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 85.19 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 85.18 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 85.06 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 84.91 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 84.8 | |
| 3trk_A | 324 | Nonstructural polyprotein; hydrolase; 2.40A {Chiku | 84.72 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 84.24 | |
| 3rc1_A | 350 | Sugar 3-ketoreductase; sugar biosynthesis, TDP bin | 84.24 | |
| 3cea_A | 346 | MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore | 84.01 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 83.74 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 83.64 | |
| 3sc4_A | 285 | Short chain dehydrogenase (A0QTM2 homolog); ssgcid | 83.18 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 83.17 | |
| 1v8b_A | 479 | Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2 | 83.05 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 82.97 | |
| 4gua_A | 670 | Non-structural polyprotein; viral precursor polypr | 82.89 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 82.78 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 82.68 | |
| 3slk_A | 795 | Polyketide synthase extender module 2; rossmann fo | 82.59 | |
| 3oid_A | 258 | Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa | 82.5 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 82.08 | |
| 3rd5_A | 291 | Mypaa.01249.C; ssgcid, structural genomics, seattl | 80.83 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 80.52 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 80.34 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 80.08 | |
| 2ixa_A | 444 | Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver | 80.02 |
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-25 Score=166.79 Aligned_cols=179 Identities=34% Similarity=0.518 Sum_probs=155.3
Q ss_pred Cccccccccccccc-CCccccccccccCCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEE
Q psy10572 1 MLRVDRKNFFTRVV-NEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVY 79 (204)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~ 79 (204)
|..+||+.|+++.+ ...|.+...+++.+..+..+.....+.+.+. +.++.+|||+|||+|.++..+++.. .+++
T Consensus 29 ~~~~~r~~f~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~vLdiG~G~G~~~~~la~~~---~~v~ 103 (210)
T 3lbf_A 29 LAAVPREKFVDEAFEQKAWDNIALPIGQGQTISQPYMVARMTELLE--LTPQSRVLEIGTGSGYQTAILAHLV---QHVC 103 (210)
T ss_dssp HHHSCGGGGSCGGGGGGTTSSSCEECTTSCEECCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHS---SEEE
T ss_pred HHhCCHHHcCCcchhhhccCCCccccCCCCEeCCHHHHHHHHHhcC--CCCCCEEEEEcCCCCHHHHHHHHhC---CEEE
Confidence 35689999999988 8899999999999999999999999999887 7889999999999999999999974 4999
Q ss_pred EEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEEecCCC
Q psy10572 80 GVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 80 ~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
++|+++.+++.+++++...+ .++++++.+|......+.++||+|+++...+++.+.+.++|+|||++++.+++.
T Consensus 104 ~vD~~~~~~~~a~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~pgG~lv~~~~~~- 177 (210)
T 3lbf_A 104 SVERIKGLQWQARRRLKNLD-----LHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALMTQLDEGGILVLPVGEE- 177 (210)
T ss_dssp EEESCHHHHHHHHHHHHHTT-----CCSEEEEESCGGGCCGGGCCEEEEEESSBCSSCCTHHHHTEEEEEEEEEEECSS-
T ss_pred EEecCHHHHHHHHHHHHHcC-----CCceEEEECCcccCCccCCCccEEEEccchhhhhHHHHHhcccCcEEEEEEcCC-
Confidence 99999999999999987643 457999999988766556789999999999999999999999999999999883
Q ss_pred CcceEEEEeecCCceEEEeeeeeeeeeeecccch
Q psy10572 160 KGQNLTIIDKLADGYTIVTTVVRGVRTNPLYRDR 193 (204)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~ 193 (204)
.+....+.+ ..+.+.. ..+.++.|+|+.+..
T Consensus 178 -~~~~~~~~~-~~~~~~~-~~~~~~~f~pl~~~~ 208 (210)
T 3lbf_A 178 -HQYLKRVRR-RGGEFII-DTVEAVRFVPLVKGE 208 (210)
T ss_dssp -SCEEEEEEE-ETTEEEE-EEEEECCCCBCCCSS
T ss_pred -ceEEEEEEE-cCCeEEE-EEeccEEEEEccCcc
Confidence 456666666 3566777 889999999998754
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-25 Score=169.85 Aligned_cols=185 Identities=43% Similarity=0.708 Sum_probs=155.5
Q ss_pred CcccccccccccccCCccccccccccCCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCC-----C
Q psy10572 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGP-----E 75 (204)
Q Consensus 1 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~-----~ 75 (204)
|..+||+.|+++. +|.|.+++++++..++.+.+...+++.+...+.++.+|||+|||+|.++..+++..+. .
T Consensus 38 ~~~~~r~~f~~~~---~y~d~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~ 114 (227)
T 1r18_A 38 MKETDRKHYSPRN---PYMDAPQPIGGGVTISAPHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDAD 114 (227)
T ss_dssp HHTSCGGGTCSSC---TTBSSCEEEETTEEECCHHHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTT
T ss_pred HHhCCHHHcCCcc---cccCCCcccCCCCccCChHHHHHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCcc
Confidence 3568999999865 8999999999999999999999999998655788899999999999999999987632 2
Q ss_pred ceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 76 GRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 76 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
++++++|+++.+++.+++++...+...+...+++++.+|........++||+|+++...+++++.+.++|+|||++++.+
T Consensus 115 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~~~~~~~~~LkpgG~lvi~~ 194 (227)
T 1r18_A 115 TRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPNAPYNAIHVGAAAPDTPTELINQLASGGRLIVPV 194 (227)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGGCSEEEEEECSCBSSCCHHHHHTEEEEEEEEEEE
T ss_pred CEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCcCCCccEEEECCchHHHHHHHHHHhcCCCEEEEEE
Confidence 59999999999999999987652100000257999999987644434789999999999999999999999999999999
Q ss_pred cCCCCcceEEEEeecCCceEEEeeeeeeeeeeec
Q psy10572 156 GEPFKGQNLTIIDKLADGYTIVTTVVRGVRTNPL 189 (204)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl 189 (204)
......+.+..+.+...+.+.. ..+.++.|+|+
T Consensus 195 ~~~~~~~~l~~~~~~~~~~~~~-~~l~~~~~~p~ 227 (227)
T 1r18_A 195 GPDGGSQYMQQYDKDANGKVEM-TRLMGVMYVPL 227 (227)
T ss_dssp SCSSSCEEEEEEEECTTSCEEE-EEEEEECCCCC
T ss_pred ecCCCceEEEEEEEcCCCcEEE-EEeccEEEeeC
Confidence 8766678888888877778888 88999999986
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.8e-25 Score=166.75 Aligned_cols=185 Identities=35% Similarity=0.545 Sum_probs=154.0
Q ss_pred CcccccccccccccCCccccccccccCCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhC----CCc
Q psy10572 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAG----PEG 76 (204)
Q Consensus 1 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~----~~~ 76 (204)
|..+||+.|+++. +|.+.+++++.+..++.+.+...+++.+...+.++.+|||+|||+|.++..+++..+ +.+
T Consensus 34 ~~~~~r~~f~p~~---~y~d~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~ 110 (227)
T 2pbf_A 34 MLQVDRGKYIKEI---PYIDTPVYISHGVTISAPHMHALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNS 110 (227)
T ss_dssp HHTSCGGGTCSSS---TTSSSCEEEETTEEECCHHHHHHHHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTC
T ss_pred HHhCCHHHcCCcc---cCCCCccccCCCCccCChHHHHHHHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCC
Confidence 3568999999965 899999999999999999999999998865578889999999999999999999874 457
Q ss_pred eEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC----CCCCCeeEEEECCCccchhHHHHHhcCCCcEEE
Q psy10572 77 RVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY----EREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMV 152 (204)
Q Consensus 77 ~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~ 152 (204)
+++++|+++.+++.|++++...+...+...+++++.+|..... ...++||+|+++...+++++.+.++|+|||+++
T Consensus 111 ~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~I~~~~~~~~~~~~~~~~LkpgG~lv 190 (227)
T 2pbf_A 111 YVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKKELGLFDAIHVGASASELPEILVDLLAENGKLI 190 (227)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHHHHCCEEEEEECSBBSSCCHHHHHHEEEEEEEE
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCccCCCcCEEEECCchHHHHHHHHHhcCCCcEEE
Confidence 9999999999999999998763210011357999999987654 445789999999999999999999999999999
Q ss_pred EEecCCCCcceEEEEeecCCceEEEeeeeeeeeeeeccc
Q psy10572 153 MPVGEPFKGQNLTIIDKLADGYTIVTTVVRGVRTNPLYR 191 (204)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~ 191 (204)
+.++... .+.+..+.+ ..+.+.. ..+.++.|+|+++
T Consensus 191 ~~~~~~~-~~~~~~~~~-~~~~~~~-~~~~~~~~~pl~~ 226 (227)
T 2pbf_A 191 IPIEEDY-TQVLYEITK-KNGKIIK-DRLFDVCFVSLKK 226 (227)
T ss_dssp EEEEETT-EEEEEEEEC-SCC-CEE-EEEEEECCCBCCC
T ss_pred EEEccCC-ceEEEEEEE-eCCeEEE-EEeccEEEEeccC
Confidence 9998643 466667777 6677887 8899999999975
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=9.1e-25 Score=164.58 Aligned_cols=189 Identities=46% Similarity=0.754 Sum_probs=157.6
Q ss_pred cccccccccccccCCccccccccccCCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEE
Q psy10572 2 LRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV 81 (204)
Q Consensus 2 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~v 81 (204)
..++|+.|++.. .|.+.+.+.+.+..+..+.....+++.+..++.++.+|||+|||+|..+..+++..++.++++++
T Consensus 32 ~~~~r~~f~~~~---~y~~~~~~~~~~~~~~~p~~~~~~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~v 108 (226)
T 1i1n_A 32 LATDRSHYAKCN---PYMDSPQSIGFQATISAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGI 108 (226)
T ss_dssp HTSCGGGTCSSC---TTSSSCEEEETTEEECCHHHHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEE
T ss_pred HhCCHHHcCCCc---cCCCCccccCCCceecCHHHHHHHHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEE
Confidence 457888888854 78899888888999999999999998887567888999999999999999999987555699999
Q ss_pred EcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEEecCCCCc
Q psy10572 82 EHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPFKG 161 (204)
Q Consensus 82 D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~~~~~~~ 161 (204)
|+++.+++.+++++...+.......++.++.+|........++||+|+++.+..++++.+.++|||||++++++++....
T Consensus 109 D~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~~~~~~~~~~~~~LkpgG~lv~~~~~~~~~ 188 (226)
T 1i1n_A 109 DHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGN 188 (226)
T ss_dssp ESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEEEEECSBBSSCCHHHHHTEEEEEEEEEEESCTTSC
T ss_pred eCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCEEEECCchHHHHHHHHHhcCCCcEEEEEEecCCCc
Confidence 99999999999988653210001347999999977554445789999999999999999999999999999999887767
Q ss_pred ceEEEEeecCCceEEEeeeeeeeeeeecccchh
Q psy10572 162 QNLTIIDKLADGYTIVTTVVRGVRTNPLYRDRF 194 (204)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~ 194 (204)
+.+..+.+...+.+.. ..+.++.|.|+.....
T Consensus 189 ~~~~~~~~~~~~~~~~-~~~~~~~f~p~~~~~~ 220 (226)
T 1i1n_A 189 QMLEQYDKLQDGSIKM-KPLMGVIYVPLTDKEK 220 (226)
T ss_dssp EEEEEEEECTTSCEEE-EEEEEECCCBCCCHHH
T ss_pred eEEEEEEEcCCCcEEE-EEcCceEEEeccCCcc
Confidence 7777888877778888 8888899999987643
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-24 Score=164.16 Aligned_cols=182 Identities=30% Similarity=0.478 Sum_probs=155.1
Q ss_pred Cccccccccccccc-CCccccccccccCCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEE
Q psy10572 1 MLRVDRKNFFTRVV-NEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVY 79 (204)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~ 79 (204)
|..+||+.|+++.+ ...|.+.+.+++.+..+..+.+...+++.+. +.++.+|||+|||+|.++..+++.. + .+++
T Consensus 43 ~~~v~r~~f~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~vLdiG~G~G~~~~~la~~~-~-~~v~ 118 (235)
T 1jg1_A 43 FLKYPRYLSVEDKYKKYAHIDEPLPIPAGQTVSAPHMVAIMLEIAN--LKPGMNILEVGTGSGWNAALISEIV-K-TDVY 118 (235)
T ss_dssp HHHSCGGGGSCGGGGGGTTSSSCEECSTTCEECCHHHHHHHHHHHT--CCTTCCEEEECCTTSHHHHHHHHHH-C-SCEE
T ss_pred HHhCCHhhhCCchhhhcCccCCCcccCCCceeccHHHHHHHHHhcC--CCCCCEEEEEeCCcCHHHHHHHHHh-C-CEEE
Confidence 34689999999998 8899999999999999999999999999886 7888999999999999999999988 3 6999
Q ss_pred EEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEEecCCC
Q psy10572 80 GVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 80 ~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
++|+++.+++.|++++...+ ..+++++.+|.........+||+|+++...+++.+.+.+.|+|||++++.+++..
T Consensus 119 ~vD~~~~~~~~a~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~~L~pgG~lvi~~~~~~ 193 (235)
T 1jg1_A 119 TIERIPELVEFAKRNLERAG-----VKNVHVILGDGSKGFPPKAPYDVIIVTAGAPKIPEPLIEQLKIGGKLIIPVGSYH 193 (235)
T ss_dssp EEESCHHHHHHHHHHHHHTT-----CCSEEEEESCGGGCCGGGCCEEEEEECSBBSSCCHHHHHTEEEEEEEEEEECSSS
T ss_pred EEeCCHHHHHHHHHHHHHcC-----CCCcEEEECCcccCCCCCCCccEEEECCcHHHHHHHHHHhcCCCcEEEEEEecCC
Confidence 99999999999999987643 3568999999744333345699999999999999999999999999999998776
Q ss_pred CcceEEEEeecCCceEEEeeeeeeeeeeecccch
Q psy10572 160 KGQNLTIIDKLADGYTIVTTVVRGVRTNPLYRDR 193 (204)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~ 193 (204)
..+.+..+.+ ..+.+.. ..+.++.|+|++...
T Consensus 194 ~~~~l~~~~~-~~~~~~~-~~~~~~~f~p~~~~~ 225 (235)
T 1jg1_A 194 LWQELLEVRK-TKDGIKI-KNHGGVAFVPLIGEY 225 (235)
T ss_dssp SCEEEEEEEE-ETTEEEE-EEEEEECCCBCBSTT
T ss_pred CccEEEEEEE-eCCeEEE-EEeccEEEEEccCCC
Confidence 5456666666 4567777 889999999998764
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.2e-24 Score=159.73 Aligned_cols=181 Identities=36% Similarity=0.578 Sum_probs=153.3
Q ss_pred Cccccccccccccc-CCccccccccccCCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEE
Q psy10572 1 MLRVDRKNFFTRVV-NEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVY 79 (204)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~ 79 (204)
|..+||+.|+++.+ ...|.+...+++.+..+..+.+...+.+.+. +.++.+|||+|||+|.++..+++..++..+++
T Consensus 29 ~~~~~r~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~ 106 (215)
T 2yxe_A 29 LLKVPREEFLPEHLKEYAYVDTPLEIGYGQTISAIHMVGMMCELLD--LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVV 106 (215)
T ss_dssp HHHSCGGGGSCGGGGGGTTSCSCEEEETTEEECCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEE
T ss_pred HHhCCHHHcCCchhhhhcccCCCccCCCCcEeCcHHHHHHHHHhhC--CCCCCEEEEECCCccHHHHHHHHHhCCCCEEE
Confidence 35689999999988 8889999999999999999999998888886 78889999999999999999999875556999
Q ss_pred EEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEEecCCC
Q psy10572 80 GVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 80 ~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
++|+++.+++.+++++...+ .+++.+..+|........++||+|+++..++++.+.+.++|+|||++++.+++..
T Consensus 107 ~vD~~~~~~~~a~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~~L~pgG~lv~~~~~~~ 181 (215)
T 2yxe_A 107 SIERIPELAEKAERTLRKLG-----YDNVIVIVGDGTLGYEPLAPYDRIYTTAAGPKIPEPLIRQLKDGGKLLMPVGRYL 181 (215)
T ss_dssp EEESCHHHHHHHHHHHHHHT-----CTTEEEEESCGGGCCGGGCCEEEEEESSBBSSCCHHHHHTEEEEEEEEEEESSSS
T ss_pred EEeCCHHHHHHHHHHHHHcC-----CCCeEEEECCcccCCCCCCCeeEEEECCchHHHHHHHHHHcCCCcEEEEEECCCC
Confidence 99999999999999887633 3568999999765444356899999999999999999999999999999998774
Q ss_pred CcceEEEEeecCCceEEEeeeeeeeeeeecccc
Q psy10572 160 KGQNLTIIDKLADGYTIVTTVVRGVRTNPLYRD 192 (204)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~ 192 (204)
+.+..+.+. .+.+.. ..+.+..|.|+...
T Consensus 182 --~~~~~~~~~-~~~~~~-~~~~~~~~~p~~~~ 210 (215)
T 2yxe_A 182 --QRLVLAEKR-GDEIII-KDCGPVAFVPLVGK 210 (215)
T ss_dssp --EEEEEEEEE-TTEEEE-EEEEEECCCBCBST
T ss_pred --cEEEEEEEe-CCEEEE-EEeccEEEEecccc
Confidence 566666654 346777 88888899999765
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.9e-22 Score=152.33 Aligned_cols=176 Identities=26% Similarity=0.368 Sum_probs=144.7
Q ss_pred Cccccccccccccc-CCccc--cccccccCCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCce
Q psy10572 1 MLRVDRKNFFTRVV-NEPYR--IKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGR 77 (204)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~y~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~ 77 (204)
|..+||+.|+++.+ ...|. +...+++.+..+..+.....+++.+. +.++.+|||+|||+|.++..+++.. .+
T Consensus 20 ~~~v~r~~f~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~---~~ 94 (231)
T 1vbf_A 20 FNKVDRSLFLPENLKDYAYAHTHEALPILPGINTTALNLGIFMLDELD--LHKGQKVLEIGTGIGYYTALIAEIV---DK 94 (231)
T ss_dssp HHHSCHHHHSCGGGGGGSSSSTTCCEEEETTEEECCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHS---SE
T ss_pred HHhCCHHHcCCcchhhhccccCCCceeeCCCCccCCHHHHHHHHHhcC--CCCCCEEEEEcCCCCHHHHHHHHHc---CE
Confidence 35689999999998 88899 99999999999999999988888886 7788999999999999999999875 49
Q ss_pred EEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEEecC
Q psy10572 78 VYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 78 v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
++++|+++.+++.+++++... .+++++.+|+.......++||+|+++..++++.+.+.++|+|||++++.+++
T Consensus 95 v~~vD~~~~~~~~a~~~~~~~-------~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~~L~pgG~l~~~~~~ 167 (231)
T 1vbf_A 95 VVSVEINEKMYNYASKLLSYY-------NNIKLILGDGTLGYEEEKPYDRVVVWATAPTLLCKPYEQLKEGGIMILPIGV 167 (231)
T ss_dssp EEEEESCHHHHHHHHHHHTTC-------SSEEEEESCGGGCCGGGCCEEEEEESSBBSSCCHHHHHTEEEEEEEEEEECS
T ss_pred EEEEeCCHHHHHHHHHHHhhc-------CCeEEEECCcccccccCCCccEEEECCcHHHHHHHHHHHcCCCcEEEEEEcC
Confidence 999999999999999987652 2789999998764444578999999999999999999999999999999877
Q ss_pred CCCcceEEEEeecCCceEEEeeeeeeeeeeeccc
Q psy10572 158 PFKGQNLTIIDKLADGYTIVTTVVRGVRTNPLYR 191 (204)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~ 191 (204)
.. ......+.+ ..+.+.. ..+....|.|+..
T Consensus 168 ~~-~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~ 198 (231)
T 1vbf_A 168 GR-VQKLYKVIK-KGNSPSL-ENLGEVMFGRIGG 198 (231)
T ss_dssp SS-SEEEEEEEC-CTTSCEE-EEEEEECCCBCCS
T ss_pred CC-ccEEEEEEE-cCCeeEE-EEeccEEEEEcCC
Confidence 64 333444443 3344555 6666667777654
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=5.2e-22 Score=156.88 Aligned_cols=185 Identities=25% Similarity=0.400 Sum_probs=149.4
Q ss_pred Cccccccccccccc--CCccccccc-cccCC---cccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCC
Q psy10572 1 MLRVDRKNFFTRVV--NEPYRIKSR-QIGYG---ADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGP 74 (204)
Q Consensus 1 ~~~~~~~~~~~~~~--~~~y~~~~~-~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~ 74 (204)
|..+||+.|+++.. ...|.+.+. +++.+ +....+.....+++.+. +.++.+|||+|||+|.++..+++....
T Consensus 22 ~~~vpr~~fl~~~~~y~~~y~~~~~~~l~~~~f~q~~~~~~~~~~l~~~l~--~~~~~~VLDiGcG~G~~~~~la~~~~~ 99 (317)
T 1dl5_A 22 FLEIPREEFLTKSYPLSYVYEDIVLVSYDDGEEYSTSSQPSLMALFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGE 99 (317)
T ss_dssp HHHSCGGGGCSSCCCHHHHTSSSCEEEEECSSCEEEECCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCT
T ss_pred HHhCCHHHhCCchhccccCccCCCcccccCCCcceeccCHHHHHHHHHhcC--CCCcCEEEEecCCchHHHHHHHHhcCC
Confidence 35689999999876 567888888 88888 77788888888888886 788999999999999999999998743
Q ss_pred CceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 75 EGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 75 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
.++|+++|+++.+++.|++++...+ .++++++.+|........++||+|+++.+.+++.+.+.+.|||||++++.
T Consensus 100 ~~~v~gvD~s~~~~~~a~~~~~~~g-----~~~v~~~~~d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~LkpgG~lvi~ 174 (317)
T 1dl5_A 100 KGLVVSVEYSRKICEIAKRNVERLG-----IENVIFVCGDGYYGVPEFSPYDVIFVTVGVDEVPETWFTQLKEGGRVIVP 174 (317)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHTT-----CCSEEEEESCGGGCCGGGCCEEEEEECSBBSCCCHHHHHHEEEEEEEEEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcC-----CCCeEEEECChhhccccCCCeEEEEEcCCHHHHHHHHHHhcCCCcEEEEE
Confidence 4689999999999999999987643 35699999998765544578999999999999999999999999999998
Q ss_pred ecCCC-CcceEEEEeecCCceEEEeeeeeeeeeeecccchh
Q psy10572 155 VGEPF-KGQNLTIIDKLADGYTIVTTVVRGVRTNPLYRDRF 194 (204)
Q Consensus 155 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~ 194 (204)
+.+.. ..+.+..+.+.. ..+.. ..+++..|.|+.....
T Consensus 175 ~~~~~~~~~~~~~~~~~~-~~~~~-~~i~~~~~~p~~~~~~ 213 (317)
T 1dl5_A 175 INLKLSRRQPAFLFKKKD-PYLVG-NYKLETRFITAGGNLG 213 (317)
T ss_dssp BCBGGGTBCEEEEEEEET-TEEEE-EEEEECCCCBCCGGGS
T ss_pred ECCCCcccceEEEEEEeC-CcEEE-EEeccEEEEEccCccc
Confidence 76553 124455554433 45767 7788888999876544
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=9e-18 Score=129.01 Aligned_cols=110 Identities=15% Similarity=0.221 Sum_probs=89.9
Q ss_pred HHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhC-CCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC
Q psy10572 41 LELLKDKIKPGARILDIGSGSGYLTACLAYMAG-PEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY 119 (204)
Q Consensus 41 ~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 119 (204)
...+..+++++.+|||+|||+|..+..+++... ++++|+|+|+|+.+++.|++++...+ ...+++++++|+....
T Consensus 61 ~~l~~~~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~----~~~~v~~~~~D~~~~~ 136 (261)
T 4gek_A 61 GMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK----APTPVDVIEGDIRDIA 136 (261)
T ss_dssp HHHHHHHCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSC----CSSCEEEEESCTTTCC
T ss_pred HHHHHHhCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhc----cCceEEEeeccccccc
Confidence 333444578999999999999999999998763 45699999999999999999987643 2358999999987654
Q ss_pred CCCCCeeEEEECCCccc--------hhHHHHHhcCCCcEEEEEec
Q psy10572 120 EREAPYDIIHVSPSYFT--------IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 120 ~~~~~~D~v~~~~~~~~--------~~~~~~~~Lk~gG~l~~~~~ 156 (204)
. ++||+|+++..+++ +++++.++|||||.|++...
T Consensus 137 ~--~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~ 179 (261)
T 4gek_A 137 I--ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEK 179 (261)
T ss_dssp C--CSEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred c--cccccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEec
Confidence 4 46999999888765 35788999999999998654
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.75 E-value=6e-17 Score=119.86 Aligned_cols=118 Identities=19% Similarity=0.231 Sum_probs=99.7
Q ss_pred CChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEE
Q psy10572 32 SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV 111 (204)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 111 (204)
+...+...++..+. +.++.+|||+|||+|.++..+++.. +.++++++|+++.+++.+++++...+ .++++++
T Consensus 24 ~~~~i~~~~l~~l~--~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~v~~~ 95 (204)
T 3e05_A 24 TKQEVRAVTLSKLR--LQDDLVMWDIGAGSASVSIEASNLM-PNGRIFALERNPQYLGFIRDNLKKFV-----ARNVTLV 95 (204)
T ss_dssp CCHHHHHHHHHHTT--CCTTCEEEEETCTTCHHHHHHHHHC-TTSEEEEEECCHHHHHHHHHHHHHHT-----CTTEEEE
T ss_pred ChHHHHHHHHHHcC--CCCCCEEEEECCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhC-----CCcEEEE
Confidence 66777777777776 7888999999999999999999986 66799999999999999999987744 3689999
Q ss_pred EecCCCCCCCCCCeeEEEECCCcc---chhHHHHHhcCCCcEEEEEecC
Q psy10572 112 VWNGKHGYEREAPYDIIHVSPSYF---TIPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 112 ~~d~~~~~~~~~~~D~v~~~~~~~---~~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
.+|+........+||+|+++.... .+++.+.++|+|||++++....
T Consensus 96 ~~d~~~~~~~~~~~D~i~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 144 (204)
T 3e05_A 96 EAFAPEGLDDLPDPDRVFIGGSGGMLEEIIDAVDRRLKSEGVIVLNAVT 144 (204)
T ss_dssp ECCTTTTCTTSCCCSEEEESCCTTCHHHHHHHHHHHCCTTCEEEEEECB
T ss_pred eCChhhhhhcCCCCCEEEECCCCcCHHHHHHHHHHhcCCCeEEEEEecc
Confidence 999876554446799999998754 4668999999999999998655
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.5e-16 Score=117.97 Aligned_cols=121 Identities=22% Similarity=0.257 Sum_probs=99.9
Q ss_pred cccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCcc-c
Q psy10572 29 ADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQG-R 107 (204)
Q Consensus 29 ~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~-~ 107 (204)
..++.+.+...++..+. +.++.+|||+|||+|.++..+++. .++++++|+++.+++.|+++++..+ .+ +
T Consensus 36 ~~~~~~~~~~~~l~~l~--~~~~~~vLDlGcG~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~~~~~~g-----~~~~ 105 (204)
T 3njr_A 36 GQITKSPMRALTLAALA--PRRGELLWDIGGGSGSVSVEWCLA---GGRAITIEPRADRIENIQKNIDTYG-----LSPR 105 (204)
T ss_dssp SCCCCHHHHHHHHHHHC--CCTTCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTT-----CTTT
T ss_pred CCCCcHHHHHHHHHhcC--CCCCCEEEEecCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcC-----CCCC
Confidence 35567777777878776 788899999999999999999987 3599999999999999999987743 34 7
Q ss_pred eEEEEecCCCCCCCCCCeeEEEECCCccc-hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 108 VQFVVWNGKHGYEREAPYDIIHVSPSYFT-IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 108 ~~~~~~d~~~~~~~~~~~D~v~~~~~~~~-~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
++++.+|+........+||+|+++..... +++.+.++|+|||++++......
T Consensus 106 v~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 158 (204)
T 3njr_A 106 MRAVQGTAPAALADLPLPEAVFIGGGGSQALYDRLWEWLAPGTRIVANAVTLE 158 (204)
T ss_dssp EEEEESCTTGGGTTSCCCSEEEECSCCCHHHHHHHHHHSCTTCEEEEEECSHH
T ss_pred EEEEeCchhhhcccCCCCCEEEECCcccHHHHHHHHHhcCCCcEEEEEecCcc
Confidence 99999998764444467999999876543 78999999999999999887643
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.74 E-value=4.5e-17 Score=117.66 Aligned_cols=122 Identities=20% Similarity=0.248 Sum_probs=98.0
Q ss_pred cccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCcc-c
Q psy10572 29 ADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQG-R 107 (204)
Q Consensus 29 ~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~-~ 107 (204)
..++.+.+...+++.+. +.++.+|||+|||+|.++..+++.. +.++++++|+++.+++.+++++...+ .+ +
T Consensus 6 g~~t~~~~~~~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~-----~~~~ 77 (178)
T 3hm2_A 6 GQLTKQHVRALAISALA--PKPHETLWDIGGGSGSIAIEWLRST-PQTTAVCFEISEERRERILSNAINLG-----VSDR 77 (178)
T ss_dssp CCSHHHHHHHHHHHHHC--CCTTEEEEEESTTTTHHHHHHHTTS-SSEEEEEECSCHHHHHHHHHHHHTTT-----CTTS
T ss_pred CcccHHHHHHHHHHHhc--ccCCCeEEEeCCCCCHHHHHHHHHC-CCCeEEEEeCCHHHHHHHHHHHHHhC-----CCCC
Confidence 34455666777777776 6788899999999999999999987 56799999999999999999987643 23 7
Q ss_pred eEEEEecCCCCCCCC-CCeeEEEECCCccc--hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 108 VQFVVWNGKHGYERE-APYDIIHVSPSYFT--IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 108 ~~~~~~d~~~~~~~~-~~~D~v~~~~~~~~--~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
+ ++.+|........ ++||+|+++...++ +++.+.+.|+|||++++......
T Consensus 78 ~-~~~~d~~~~~~~~~~~~D~i~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~ 131 (178)
T 3hm2_A 78 I-AVQQGAPRAFDDVPDNPDVIFIGGGLTAPGVFAAAWKRLPVGGRLVANAVTVE 131 (178)
T ss_dssp E-EEECCTTGGGGGCCSCCSEEEECC-TTCTTHHHHHHHTCCTTCEEEEEECSHH
T ss_pred E-EEecchHhhhhccCCCCCEEEECCcccHHHHHHHHHHhcCCCCEEEEEeeccc
Confidence 7 8888865533222 78999999988876 88999999999999999876543
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-17 Score=128.18 Aligned_cols=106 Identities=19% Similarity=0.158 Sum_probs=87.3
Q ss_pred HHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC
Q psy10572 40 MLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY 119 (204)
Q Consensus 40 ~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 119 (204)
+.+.+......+.+|||+|||+|.++..++.... +|+|+|+|+.+++.|++ .+++.++++++....
T Consensus 29 l~~~l~~~~~~~~~vLDvGcGtG~~~~~l~~~~~---~v~gvD~s~~ml~~a~~-----------~~~v~~~~~~~e~~~ 94 (257)
T 4hg2_A 29 LFRWLGEVAPARGDALDCGCGSGQASLGLAEFFE---RVHAVDPGEAQIRQALR-----------HPRVTYAVAPAEDTG 94 (257)
T ss_dssp HHHHHHHHSSCSSEEEEESCTTTTTHHHHHTTCS---EEEEEESCHHHHHTCCC-----------CTTEEEEECCTTCCC
T ss_pred HHHHHHHhcCCCCCEEEEcCCCCHHHHHHHHhCC---EEEEEeCcHHhhhhhhh-----------cCCceeehhhhhhhc
Confidence 4444544456678999999999999999998763 99999999999987743 258999999988887
Q ss_pred CCCCCeeEEEECCCccc-----hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 120 EREAPYDIIHVSPSYFT-----IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 120 ~~~~~~D~v~~~~~~~~-----~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
+++++||+|++...+++ .++++.++|||||.|++..+...
T Consensus 95 ~~~~sfD~v~~~~~~h~~~~~~~~~e~~rvLkpgG~l~~~~~~~~ 139 (257)
T 4hg2_A 95 LPPASVDVAIAAQAMHWFDLDRFWAELRRVARPGAVFAAVTYGLT 139 (257)
T ss_dssp CCSSCEEEEEECSCCTTCCHHHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred ccCCcccEEEEeeehhHhhHHHHHHHHHHHcCCCCEEEEEECCCC
Confidence 88899999999988876 45789999999999988776543
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-16 Score=127.25 Aligned_cols=139 Identities=20% Similarity=0.231 Sum_probs=105.8
Q ss_pred cccccccccCCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhh
Q psy10572 18 YRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97 (204)
Q Consensus 18 y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~ 97 (204)
|.+.......+..+..+.....++..+. +.++.+|||+|||+|.++..+++..++.++++++|+++.+++.|++++..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~ 152 (336)
T 2b25_A 75 LEDYVVLMKRGTAITFPKDINMILSMMD--INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKH 152 (336)
T ss_dssp HHHHHHHSCCSSCCCCHHHHHHHHHHHT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHhhhhcCCCcccCHHHHHHHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Confidence 3344445666777777777888888886 78899999999999999999999865667999999999999999999874
Q ss_pred cC----cccc--CccceEEEEecCCCCC--CCCCCeeEEEECCCccc-hhHHHHHhcCCCcEEEEEecCC
Q psy10572 98 GN----SELL--DQGRVQFVVWNGKHGY--EREAPYDIIHVSPSYFT-IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 98 ~~----~~~~--~~~~~~~~~~d~~~~~--~~~~~~D~v~~~~~~~~-~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
.+ .+.+ ...+++++.+|+.+.. .+.++||+|+++.+.++ .++.+.++|+|||.+++..+..
T Consensus 153 ~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 222 (336)
T 2b25_A 153 WRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHGGVCAVYVVNI 222 (336)
T ss_dssp HHHHHTTTCSSCCCCCEEEEESCTTCCC-------EEEEEECSSSTTTTHHHHGGGEEEEEEEEEEESSH
T ss_pred hhcccccccccccCCceEEEECChHHcccccCCCCeeEEEECCCCHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence 21 0001 1257999999987652 34467999999876654 5799999999999999877654
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.2e-16 Score=117.87 Aligned_cols=115 Identities=18% Similarity=0.304 Sum_probs=96.1
Q ss_pred HHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCC
Q psy10572 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKH 117 (204)
Q Consensus 38 ~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 117 (204)
..+++.+. +.++.+|||+|||+|.++..+++..++..+++++|+++.+++.+++++...+ .+++.++.+|+..
T Consensus 27 ~~~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~~~~~~~d~~~ 99 (219)
T 3dh0_A 27 EKVLKEFG--LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLG-----LKNVEVLKSEENK 99 (219)
T ss_dssp HHHHHHHT--CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHT-----CTTEEEEECBTTB
T ss_pred HHHHHHhC--CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcC-----CCcEEEEeccccc
Confidence 45555565 6788899999999999999999987566799999999999999999987643 3479999999887
Q ss_pred CCCCCCCeeEEEECCCccc------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 118 GYEREAPYDIIHVSPSYFT------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 118 ~~~~~~~~D~v~~~~~~~~------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
...+.++||+|+++..+++ +++++.++|+|||.+++..+...
T Consensus 100 ~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 147 (219)
T 3dh0_A 100 IPLPDNTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKE 147 (219)
T ss_dssp CSSCSSCEEEEEEESCGGGCSSHHHHHHHHHHHEEEEEEEEEEEECSS
T ss_pred CCCCCCCeeEEEeehhhhhcCCHHHHHHHHHHHhCCCeEEEEEEeccc
Confidence 6666788999999888765 45889999999999999875543
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.5e-16 Score=116.99 Aligned_cols=107 Identities=23% Similarity=0.330 Sum_probs=88.9
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC-CCCCCee
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-EREAPYD 126 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D 126 (204)
++++.+|||+|||+|.++..+++..++.++++|+|+++.+++.|++++...+ ..++++++.+|+.... ...++||
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~~~~~~~~fD 95 (197)
T 3eey_A 20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLN----LIDRVTLIKDGHQNMDKYIDCPVK 95 (197)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTT----CGGGEEEECSCGGGGGGTCCSCEE
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CCCCeEEEECCHHHHhhhccCCce
Confidence 6888999999999999999999987556799999999999999999987743 1258999999976543 3347899
Q ss_pred EEEECCCc---------------cchhHHHHHhcCCCcEEEEEecCC
Q psy10572 127 IIHVSPSY---------------FTIPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 127 ~v~~~~~~---------------~~~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
+|+++.++ ..+++.+.++|+|||++++.++..
T Consensus 96 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 142 (197)
T 3eey_A 96 AVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYG 142 (197)
T ss_dssp EEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCB
T ss_pred EEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccC
Confidence 99998765 136789999999999999987554
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.9e-16 Score=114.17 Aligned_cols=125 Identities=18% Similarity=0.157 Sum_probs=95.4
Q ss_pred CcccCChHHHHHHHHHHhccC-CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCcc
Q psy10572 28 GADISSPHIHAQMLELLKDKI-KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQG 106 (204)
Q Consensus 28 ~~~~~~~~~~~~~~~~l~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~ 106 (204)
+...+...+...+.+.+.... .++.+|||+|||+|.++..++.. ...+++++|+++.+++.|++++...+ .+
T Consensus 21 ~~rp~~~~~~~~l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~-----~~ 93 (189)
T 3p9n_A 21 GTRPTTDRVRESLFNIVTARRDLTGLAVLDLYAGSGALGLEALSR--GAASVLFVESDQRSAAVIARNIEALG-----LS 93 (189)
T ss_dssp CC---CHHHHHHHHHHHHHHSCCTTCEEEEETCTTCHHHHHHHHT--TCSEEEEEECCHHHHHHHHHHHHHHT-----CS
T ss_pred CCccCcHHHHHHHHHHHHhccCCCCCEEEEeCCCcCHHHHHHHHC--CCCeEEEEECCHHHHHHHHHHHHHcC-----CC
Confidence 334456666777777776321 57789999999999999987774 33589999999999999999988744 36
Q ss_pred ceEEEEecCCCCC--CCCCCeeEEEECCCccc-------hhHHHHH--hcCCCcEEEEEecCCC
Q psy10572 107 RVQFVVWNGKHGY--EREAPYDIIHVSPSYFT-------IPQKLLD--QLVPGGRMVMPVGEPF 159 (204)
Q Consensus 107 ~~~~~~~d~~~~~--~~~~~~D~v~~~~~~~~-------~~~~~~~--~Lk~gG~l~~~~~~~~ 159 (204)
+++++++|+.... .+.++||+|+++.++.+ .++.+.+ +|+|||.+++......
T Consensus 94 ~v~~~~~d~~~~~~~~~~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~~ 157 (189)
T 3p9n_A 94 GATLRRGAVAAVVAAGTTSPVDLVLADPPYNVDSADVDAILAALGTNGWTREGTVAVVERATTC 157 (189)
T ss_dssp CEEEEESCHHHHHHHCCSSCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEETTS
T ss_pred ceEEEEccHHHHHhhccCCCccEEEECCCCCcchhhHHHHHHHHHhcCccCCCeEEEEEecCCC
Confidence 8999999976532 23478999999988765 3466777 9999999999887654
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.70 E-value=2.3e-16 Score=120.48 Aligned_cols=116 Identities=23% Similarity=0.313 Sum_probs=94.7
Q ss_pred CChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEE
Q psy10572 32 SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV 111 (204)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 111 (204)
..+.....+++.+. +.++.+|||+|||+|..+..+++..+ ++++|+|+++.+++.+++++...+ ..++++++
T Consensus 20 ~~~~~~~~l~~~~~--~~~~~~VLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~l~~a~~~~~~~~----~~~~v~~~ 91 (256)
T 1nkv_A 20 FTEEKYATLGRVLR--MKPGTRILDLGSGSGEMLCTWARDHG--ITGTGIDMSSLFTAQAKRRAEELG----VSERVHFI 91 (256)
T ss_dssp CCHHHHHHHHHHTC--CCTTCEEEEETCTTCHHHHHHHHHTC--CEEEEEESCHHHHHHHHHHHHHTT----CTTTEEEE
T ss_pred CCHHHHHHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcC----CCcceEEE
Confidence 34556666666665 67889999999999999999998863 589999999999999999987643 12479999
Q ss_pred EecCCCCCCCCCCeeEEEECCCccch------hHHHHHhcCCCcEEEEEec
Q psy10572 112 VWNGKHGYEREAPYDIIHVSPSYFTI------PQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 112 ~~d~~~~~~~~~~~D~v~~~~~~~~~------~~~~~~~Lk~gG~l~~~~~ 156 (204)
.+|+....+ .++||+|++...++++ ++++.++|||||++++..+
T Consensus 92 ~~d~~~~~~-~~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 141 (256)
T 1nkv_A 92 HNDAAGYVA-NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEP 141 (256)
T ss_dssp ESCCTTCCC-SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred ECChHhCCc-CCCCCEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEecC
Confidence 999877655 6789999998776653 6889999999999999764
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.5e-16 Score=115.91 Aligned_cols=114 Identities=17% Similarity=0.191 Sum_probs=86.7
Q ss_pred HHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCC
Q psy10572 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGK 116 (204)
Q Consensus 37 ~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~ 116 (204)
.......+...+.++.+|||+|||+|.++..+++. .++|+|+|+|+.+++.|++++...+ .++++++..+..
T Consensus 9 ~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~---~~~v~~vD~s~~~l~~a~~~~~~~~-----~~~v~~~~~~~~ 80 (185)
T 3mti_A 9 IHMSHDFLAEVLDDESIVVDATMGNGNDTAFLAGL---SKKVYAFDVQEQALGKTSQRLSDLG-----IENTELILDGHE 80 (185)
T ss_dssp HHHHHHHHHTTCCTTCEEEESCCTTSHHHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHHT-----CCCEEEEESCGG
T ss_pred HHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcC-----CCcEEEEeCcHH
Confidence 34444555555788999999999999999999987 3599999999999999999987743 367999986654
Q ss_pred CCC-CCCCCeeEEEECCCc-c--------------chhHHHHHhcCCCcEEEEEecCC
Q psy10572 117 HGY-EREAPYDIIHVSPSY-F--------------TIPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 117 ~~~-~~~~~~D~v~~~~~~-~--------------~~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
... ...++||+|+++.++ + ..++.+.++|||||++++.++..
T Consensus 81 ~l~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 138 (185)
T 3mti_A 81 NLDHYVREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYG 138 (185)
T ss_dssp GGGGTCCSCEEEEEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC--
T ss_pred HHHhhccCCcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Confidence 421 225789999988432 1 13478889999999999988754
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.69 E-value=5.5e-16 Score=116.63 Aligned_cols=128 Identities=23% Similarity=0.359 Sum_probs=95.1
Q ss_pred cccccccCCcccCChHHHHHHHHHHhccCCCCCEEEEEcCC-CcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhc
Q psy10572 20 IKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSG-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKG 98 (204)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~ 98 (204)
+..+....+..++.+.. ..+. +...++++.+|||+||| +|.++..+++.. ..+++|+|+++.+++.|++++..+
T Consensus 28 ~~~~~~~~~~~~p~~~~-~~l~--~~~~~~~~~~vLDlG~G~~G~~~~~la~~~--~~~v~~vD~s~~~~~~a~~~~~~~ 102 (230)
T 3evz_A 28 GLDIEYHPKGLVTTPIS-RYIF--LKTFLRGGEVALEIGTGHTAMMALMAEKFF--NCKVTATEVDEEFFEYARRNIERN 102 (230)
T ss_dssp CCCCCCCTTSCCCCHHH-HHHH--HHTTCCSSCEEEEECCTTTCHHHHHHHHHH--CCEEEEEECCHHHHHHHHHHHHHT
T ss_pred CCceecCCCeEeCCCch-hhhH--hHhhcCCCCEEEEcCCCHHHHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHh
Confidence 33333444444444433 2231 22236788999999999 999999999985 359999999999999999998874
Q ss_pred CccccCccceEEEEecCCCC-CCCCCCeeEEEECCCcc-------------------------chhHHHHHhcCCCcEEE
Q psy10572 99 NSELLDQGRVQFVVWNGKHG-YEREAPYDIIHVSPSYF-------------------------TIPQKLLDQLVPGGRMV 152 (204)
Q Consensus 99 ~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~v~~~~~~~-------------------------~~~~~~~~~Lk~gG~l~ 152 (204)
+ . +++++.+|+... ..+.++||+|++++++. .+++.+.++|+|||+++
T Consensus 103 ~-----~-~v~~~~~d~~~~~~~~~~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 176 (230)
T 3evz_A 103 N-----S-NVRLVKSNGGIIKGVVEGTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVA 176 (230)
T ss_dssp T-----C-CCEEEECSSCSSTTTCCSCEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEE
T ss_pred C-----C-CcEEEeCCchhhhhcccCceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEE
Confidence 4 2 799999996421 23347899999998763 35678889999999999
Q ss_pred EEecCC
Q psy10572 153 MPVGEP 158 (204)
Q Consensus 153 ~~~~~~ 158 (204)
+.++..
T Consensus 177 ~~~~~~ 182 (230)
T 3evz_A 177 LYLPDK 182 (230)
T ss_dssp EEEESC
T ss_pred EEeccc
Confidence 987655
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.69 E-value=3.4e-16 Score=119.97 Aligned_cols=110 Identities=14% Similarity=0.275 Sum_probs=91.3
Q ss_pred HHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCC
Q psy10572 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGK 116 (204)
Q Consensus 37 ~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~ 116 (204)
...+++.+. +.++.+|||+|||+|.++..+++... +++|+|+|+.+++.+++++...+ .+++.++.+|+.
T Consensus 26 ~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~-----~~~v~~~~~d~~ 95 (260)
T 1vl5_A 26 LAKLMQIAA--LKGNEEVLDVATGGGHVANAFAPFVK---KVVAFDLTEDILKVARAFIEGNG-----HQQVEYVQGDAE 95 (260)
T ss_dssp HHHHHHHHT--CCSCCEEEEETCTTCHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTT-----CCSEEEEECCC-
T ss_pred HHHHHHHhC--CCCCCEEEEEeCCCCHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHhcC-----CCceEEEEecHH
Confidence 445666665 57888999999999999999988763 99999999999999999887633 357999999988
Q ss_pred CCCCCCCCeeEEEECCCccc------hhHHHHHhcCCCcEEEEEec
Q psy10572 117 HGYEREAPYDIIHVSPSYFT------IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 117 ~~~~~~~~~D~v~~~~~~~~------~~~~~~~~Lk~gG~l~~~~~ 156 (204)
...++.++||+|+++..+++ +++++.++|||||++++..+
T Consensus 96 ~l~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~~~~~ 141 (260)
T 1vl5_A 96 QMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDN 141 (260)
T ss_dssp CCCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hCCCCCCCEEEEEEhhhhHhcCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 76666789999999988765 45889999999999999654
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.69 E-value=5.4e-16 Score=115.62 Aligned_cols=103 Identities=13% Similarity=0.166 Sum_probs=87.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC--CCCCCee
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY--EREAPYD 126 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D 126 (204)
.++.+|||+|||+|.++..+++.. +..+++|+|+++.+++.|++++...+ .+++.++.+|+.... .+.++||
T Consensus 40 ~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~gvD~s~~~l~~a~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~~~~D 113 (214)
T 1yzh_A 40 NDNPIHVEVGSGKGAFVSGMAKQN-PDINYIGIDIQKSVLSYALDKVLEVG-----VPNIKLLWVDGSDLTDYFEDGEID 113 (214)
T ss_dssp SCCCEEEEESCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHHC-----CSSEEEEECCSSCGGGTSCTTCCS
T ss_pred CCCCeEEEEccCcCHHHHHHHHHC-CCCCEEEEEcCHHHHHHHHHHHHHcC-----CCCEEEEeCCHHHHHhhcCCCCCC
Confidence 567899999999999999999987 67799999999999999999987643 368999999987643 4567899
Q ss_pred EEEECCCcc--------------chhHHHHHhcCCCcEEEEEecC
Q psy10572 127 IIHVSPSYF--------------TIPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 127 ~v~~~~~~~--------------~~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
+|+++.+.+ .+++.+.++|+|||.+++.+..
T Consensus 114 ~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (214)
T 1yzh_A 114 RLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDN 158 (214)
T ss_dssp EEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESC
T ss_pred EEEEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCC
Confidence 999987764 3678899999999999998754
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.69 E-value=4.2e-16 Score=116.33 Aligned_cols=119 Identities=18% Similarity=0.142 Sum_probs=90.4
Q ss_pred HHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEec
Q psy10572 35 HIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWN 114 (204)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d 114 (204)
.....+.+.+. ..++.+|||+|||+|.++..+++.. +..+++|+|+++.+++.+++++...+.......+++++.+|
T Consensus 16 ~~~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d 92 (217)
T 3jwh_A 16 QRMNGVVAALK--QSNARRVIDLGCGQGNLLKILLKDS-FFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGA 92 (217)
T ss_dssp HHHHHHHHHHH--HTTCCEEEEETCTTCHHHHHHHHCT-TCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECC
T ss_pred HHHHHHHHHHH--hcCCCEEEEeCCCCCHHHHHHHhhC-CCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCC
Confidence 34455555555 4677899999999999999999876 55699999999999999999986533100011379999999
Q ss_pred CCCCCCCCCCeeEEEECCCccc--------hhHHHHHhcCCCcEEEEEec
Q psy10572 115 GKHGYEREAPYDIIHVSPSYFT--------IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 115 ~~~~~~~~~~~D~v~~~~~~~~--------~~~~~~~~Lk~gG~l~~~~~ 156 (204)
+.....+.++||+|+++..+++ +++.+.++|||||.++++..
T Consensus 93 ~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 142 (217)
T 3jwh_A 93 LTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPN 142 (217)
T ss_dssp TTSCCGGGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEB
T ss_pred cccccccCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccC
Confidence 7655545578999999888765 34678899999997766544
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.69 E-value=2.2e-16 Score=116.94 Aligned_cols=111 Identities=14% Similarity=0.045 Sum_probs=82.8
Q ss_pred HHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCc-------cccCccceEEEE
Q psy10572 40 MLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNS-------ELLDQGRVQFVV 112 (204)
Q Consensus 40 ~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~ 112 (204)
++..+. +.++.+|||+|||+|..+..+++.. .+|+|+|+|+.+++.|+++...... +.....++++++
T Consensus 14 ~~~~l~--~~~~~~vLD~GCG~G~~~~~la~~g---~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 88 (203)
T 1pjz_A 14 YWSSLN--VVPGARVLVPLCGKSQDMSWLSGQG---YHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWC 88 (203)
T ss_dssp HHHHHC--CCTTCEEEETTTCCSHHHHHHHHHC---CEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEE
T ss_pred HHHhcc--cCCCCEEEEeCCCCcHhHHHHHHCC---CeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEE
Confidence 344443 5678899999999999999999874 3999999999999999987542100 000125799999
Q ss_pred ecCCCCCCCC-CCeeEEEECCCccc--------hhHHHHHhcCCCcEEEEEe
Q psy10572 113 WNGKHGYERE-APYDIIHVSPSYFT--------IPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 113 ~d~~~~~~~~-~~~D~v~~~~~~~~--------~~~~~~~~Lk~gG~l~~~~ 155 (204)
+|+....+.. ++||+|++...+.+ +++++.++|||||++++.+
T Consensus 89 ~d~~~l~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~ 140 (203)
T 1pjz_A 89 GDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLIT 140 (203)
T ss_dssp ECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEE
T ss_pred CccccCCcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 9988765543 68999998776654 3467889999999844443
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=6.3e-16 Score=117.13 Aligned_cols=116 Identities=18% Similarity=0.230 Sum_probs=96.6
Q ss_pred ChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEE
Q psy10572 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVV 112 (204)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 112 (204)
++.....+++.+. +.++.+|||+|||+|.++..+++... +++++|+++.+++.+++++...+ .+++.++.
T Consensus 6 ~~~~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~-----~~~v~~~~ 75 (239)
T 1xxl_A 6 HHHSLGLMIKTAE--CRAEHRVLDIGAGAGHTALAFSPYVQ---ECIGVDATKEMVEVASSFAQEKG-----VENVRFQQ 75 (239)
T ss_dssp CHHHHHHHHHHHT--CCTTCEEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHHT-----CCSEEEEE
T ss_pred cCCCcchHHHHhC--cCCCCEEEEEccCcCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcC-----CCCeEEEe
Confidence 4556667777777 78899999999999999999988763 99999999999999999887643 35799999
Q ss_pred ecCCCCCCCCCCeeEEEECCCccc------hhHHHHHhcCCCcEEEEEecCC
Q psy10572 113 WNGKHGYEREAPYDIIHVSPSYFT------IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 113 ~d~~~~~~~~~~~D~v~~~~~~~~------~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
+|+.....+.++||+|++...+++ +++++.++|+|||++++.....
T Consensus 76 ~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 127 (239)
T 1xxl_A 76 GTAESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYA 127 (239)
T ss_dssp CBTTBCCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred cccccCCCCCCcEEEEEECCchhhccCHHHHHHHHHHHcCCCcEEEEEEcCC
Confidence 998776666688999999987755 4588999999999999976543
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=7.2e-16 Score=119.33 Aligned_cols=103 Identities=20% Similarity=0.123 Sum_probs=85.2
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
+.++.+|||||||+|.++..++... ++++|+|+|+++.+++.|+++++..+ ..+++++.+|+.... .++||+
T Consensus 120 l~~g~rVLDIGcG~G~~ta~~lA~~-~ga~V~gIDis~~~l~~Ar~~~~~~g-----l~~v~~v~gDa~~l~--d~~FDv 191 (298)
T 3fpf_A 120 FRRGERAVFIGGGPLPLTGILLSHV-YGMRVNVVEIEPDIAELSRKVIEGLG-----VDGVNVITGDETVID--GLEFDV 191 (298)
T ss_dssp CCTTCEEEEECCCSSCHHHHHHHHT-TCCEEEEEESSHHHHHHHHHHHHHHT-----CCSEEEEESCGGGGG--GCCCSE
T ss_pred CCCcCEEEEECCCccHHHHHHHHHc-cCCEEEEEECCHHHHHHHHHHHHhcC-----CCCeEEEECchhhCC--CCCcCE
Confidence 7899999999999998775554444 56799999999999999999987744 368999999987643 578999
Q ss_pred EEECCCcc---chhHHHHHhcCCCcEEEEEecCC
Q psy10572 128 IHVSPSYF---TIPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 128 v~~~~~~~---~~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
|++..... .+++++.++|||||++++.....
T Consensus 192 V~~~a~~~d~~~~l~el~r~LkPGG~Lvv~~~~~ 225 (298)
T 3fpf_A 192 LMVAALAEPKRRVFRNIHRYVDTETRIIYRTYTG 225 (298)
T ss_dssp EEECTTCSCHHHHHHHHHHHCCTTCEEEEEECCG
T ss_pred EEECCCccCHHHHHHHHHHHcCCCcEEEEEcCcc
Confidence 99887654 47799999999999999977544
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.68 E-value=6.5e-16 Score=115.37 Aligned_cols=119 Identities=16% Similarity=0.179 Sum_probs=89.6
Q ss_pred HHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEec
Q psy10572 35 HIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWN 114 (204)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d 114 (204)
.....+.+.+. ..++.+|||+|||+|.++..+++.. +..+++|+|+++.+++.+++++...........+++++.+|
T Consensus 16 ~~~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d 92 (219)
T 3jwg_A 16 QRLGTVVAVLK--SVNAKKVIDLGCGEGNLLSLLLKDK-SFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSS 92 (219)
T ss_dssp HHHHHHHHHHH--HTTCCEEEEETCTTCHHHHHHHTST-TCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECC
T ss_pred HHHHHHHHHHh--hcCCCEEEEecCCCCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCc
Confidence 34445555554 4677899999999999999999876 55699999999999999999886533100011279999999
Q ss_pred CCCCCCCCCCeeEEEECCCccc--------hhHHHHHhcCCCcEEEEEec
Q psy10572 115 GKHGYEREAPYDIIHVSPSYFT--------IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 115 ~~~~~~~~~~~D~v~~~~~~~~--------~~~~~~~~Lk~gG~l~~~~~ 156 (204)
+.....+.++||+|++...+++ +++.+.++|||||.++.+..
T Consensus 93 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~ 142 (219)
T 3jwg_A 93 LVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPN 142 (219)
T ss_dssp SSSCCGGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEB
T ss_pred ccccccccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccc
Confidence 8655555578999999887765 34678899999996665443
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=6.2e-16 Score=118.96 Aligned_cols=115 Identities=21% Similarity=0.239 Sum_probs=93.1
Q ss_pred HHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecC
Q psy10572 36 IHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNG 115 (204)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~ 115 (204)
....++..+. .+.++.+|||+|||+|.++..+++. +.++++|+|+++.+++.+++++...+ ..++++++.+|+
T Consensus 33 ~~~~~l~~l~-~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gvD~s~~~~~~a~~~~~~~~----~~~~v~~~~~d~ 105 (267)
T 3kkz_A 33 VTLKALSFID-NLTEKSLIADIGCGTGGQTMVLAGH--VTGQVTGLDFLSGFIDIFNRNARQSG----LQNRVTGIVGSM 105 (267)
T ss_dssp HHHHHHTTCC-CCCTTCEEEEETCTTCHHHHHHHTT--CSSEEEEEESCHHHHHHHHHHHHHTT----CTTTEEEEECCT
T ss_pred HHHHHHHhcc-cCCCCCEEEEeCCCCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHHHHHHcC----CCcCcEEEEcCh
Confidence 3334444333 3567889999999999999999987 45699999999999999999987643 125699999998
Q ss_pred CCCCCCCCCeeEEEECCCccc-----hhHHHHHhcCCCcEEEEEecC
Q psy10572 116 KHGYEREAPYDIIHVSPSYFT-----IPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 116 ~~~~~~~~~~D~v~~~~~~~~-----~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
.....+.++||+|+++..+++ +++.+.++|||||.+++....
T Consensus 106 ~~~~~~~~~fD~i~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 152 (267)
T 3kkz_A 106 DDLPFRNEELDLIWSEGAIYNIGFERGLNEWRKYLKKGGYLAVSECS 152 (267)
T ss_dssp TSCCCCTTCEEEEEESSCGGGTCHHHHHHHHGGGEEEEEEEEEEEEE
T ss_pred hhCCCCCCCEEEEEEcCCceecCHHHHHHHHHHHcCCCCEEEEEEee
Confidence 776666789999999988766 468899999999999998754
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.4e-15 Score=116.10 Aligned_cols=119 Identities=29% Similarity=0.340 Sum_probs=97.4
Q ss_pred ChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEE
Q psy10572 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVV 112 (204)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 112 (204)
.+.....+...+. +.++.+|||+|||+|.++..+++..++.++++++|+++.+++.|++++...+ ...+++++.
T Consensus 78 ~~~~~~~i~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~----~~~~v~~~~ 151 (255)
T 3mb5_A 78 HPKDAALIVAYAG--ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAG----FDDRVTIKL 151 (255)
T ss_dssp CHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHT----CTTTEEEEC
T ss_pred cHhHHHHHHHhhC--CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcC----CCCceEEEE
Confidence 4445556666665 6788999999999999999999985567899999999999999999987744 123499999
Q ss_pred ecCCCCCCCCCCeeEEEECCCccc-hhHHHHHhcCCCcEEEEEecCC
Q psy10572 113 WNGKHGYEREAPYDIIHVSPSYFT-IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 113 ~d~~~~~~~~~~~D~v~~~~~~~~-~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
+|+.+. .+.++||+|+++.+... +++.+.++|+|||++++..+..
T Consensus 152 ~d~~~~-~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 197 (255)
T 3mb5_A 152 KDIYEG-IEEENVDHVILDLPQPERVVEHAAKALKPGGFFVAYTPCS 197 (255)
T ss_dssp SCGGGC-CCCCSEEEEEECSSCGGGGHHHHHHHEEEEEEEEEEESSH
T ss_pred Cchhhc-cCCCCcCEEEECCCCHHHHHHHHHHHcCCCCEEEEEECCH
Confidence 998755 45578999999887664 7899999999999999977654
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.67 E-value=1e-15 Score=113.81 Aligned_cols=112 Identities=24% Similarity=0.308 Sum_probs=90.2
Q ss_pred HHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCC
Q psy10572 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGK 116 (204)
Q Consensus 37 ~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~ 116 (204)
...+.+.+. ..++ +|||+|||+|.++..+++. +..+++++|+++.+++.+++++...+ ..++++++.+|+.
T Consensus 33 ~~~~~~~~~--~~~~-~vLdiG~G~G~~~~~l~~~--~~~~v~~~D~s~~~~~~a~~~~~~~~----~~~~~~~~~~d~~ 103 (219)
T 3dlc_A 33 AENIINRFG--ITAG-TCIDIGSGPGALSIALAKQ--SDFSIRALDFSKHMNEIALKNIADAN----LNDRIQIVQGDVH 103 (219)
T ss_dssp HHHHHHHHC--CCEE-EEEEETCTTSHHHHHHHHH--SEEEEEEEESCHHHHHHHHHHHHHTT----CTTTEEEEECBTT
T ss_pred HHHHHHhcC--CCCC-EEEEECCCCCHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHhcc----ccCceEEEEcCHH
Confidence 334444443 3444 9999999999999999987 45699999999999999999987643 1347999999988
Q ss_pred CCCCCCCCeeEEEECCCccc------hhHHHHHhcCCCcEEEEEecC
Q psy10572 117 HGYEREAPYDIIHVSPSYFT------IPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 117 ~~~~~~~~~D~v~~~~~~~~------~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
....+.++||+|+++..+++ +++++.++|+|||.+++....
T Consensus 104 ~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 150 (219)
T 3dlc_A 104 NIPIEDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGGGF 150 (219)
T ss_dssp BCSSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred HCCCCcccccEEEECchHhhccCHHHHHHHHHHhCCCCCEEEEEecc
Confidence 76666789999999988765 458899999999999997543
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.67 E-value=1.4e-15 Score=113.87 Aligned_cols=113 Identities=19% Similarity=0.288 Sum_probs=92.4
Q ss_pred HHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecC
Q psy10572 36 IHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNG 115 (204)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~ 115 (204)
....+.+.+...+.++.+|||+|||+|.++..+++.. + +++++|+++.+++.++++..... .+++++.+|+
T Consensus 24 ~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~-~--~v~~vD~s~~~~~~a~~~~~~~~------~~~~~~~~d~ 94 (227)
T 1ve3_A 24 RIETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYG-F--EVVGVDISEDMIRKAREYAKSRE------SNVEFIVGDA 94 (227)
T ss_dssp HHHHHHHHHHHSCCSCCEEEEETCTTSHHHHHHHHTT-C--EEEEEESCHHHHHHHHHHHHHTT------CCCEEEECCT
T ss_pred HHHHHHHHHHHhcCCCCeEEEEeccCCHHHHHHHHcC-C--EEEEEECCHHHHHHHHHHHHhcC------CCceEEECch
Confidence 3445556666666778899999999999999998876 3 99999999999999999887632 5789999998
Q ss_pred CCCCCCCCCeeEEEECCC--ccc------hhHHHHHhcCCCcEEEEEecC
Q psy10572 116 KHGYEREAPYDIIHVSPS--YFT------IPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 116 ~~~~~~~~~~D~v~~~~~--~~~------~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
.....+.++||+|+++.+ ..+ +++.+.++|+|||.+++..++
T Consensus 95 ~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 95 RKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp TSCCSCTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hcCCCCCCcEEEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence 775555678999999887 433 457888999999999998765
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.67 E-value=9.6e-16 Score=115.14 Aligned_cols=102 Identities=22% Similarity=0.324 Sum_probs=86.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC---CCCCCC
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG---YEREAP 124 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~ 124 (204)
++|+.+|||+|||+|.++..+++..+++++|+|+|+++.+++.+++++.. .+|+..+.+|.... .....+
T Consensus 75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~-------~~ni~~V~~d~~~p~~~~~~~~~ 147 (233)
T 4df3_A 75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRD-------RRNIFPILGDARFPEKYRHLVEG 147 (233)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTT-------CTTEEEEESCTTCGGGGTTTCCC
T ss_pred CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHh-------hcCeeEEEEeccCccccccccce
Confidence 68999999999999999999999988899999999999999999888765 35888888887532 233478
Q ss_pred eeEEEECCCccc----hhHHHHHhcCCCcEEEEEec
Q psy10572 125 YDIIHVSPSYFT----IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 125 ~D~v~~~~~~~~----~~~~~~~~Lk~gG~l~~~~~ 156 (204)
+|+|++....++ .+.++.+.|||||++++++.
T Consensus 148 vDvVf~d~~~~~~~~~~l~~~~r~LKpGG~lvI~ik 183 (233)
T 4df3_A 148 VDGLYADVAQPEQAAIVVRNARFFLRDGGYMLMAIK 183 (233)
T ss_dssp EEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEEEEeccCChhHHHHHHHHHHhccCCCEEEEEEe
Confidence 999998877765 45788899999999998753
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=5.5e-16 Score=118.45 Aligned_cols=105 Identities=13% Similarity=0.026 Sum_probs=79.9
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhc-------Cccc-----cCccceEEEEecC
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKG-------NSEL-----LDQGRVQFVVWNG 115 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-------~~~~-----~~~~~~~~~~~d~ 115 (204)
..++.+|||+|||+|..+..+++.. .+|+|+|+|+.+++.|+++.... .... ....+++++++|+
T Consensus 66 ~~~~~~vLD~GCG~G~~~~~La~~G---~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~ 142 (252)
T 2gb4_A 66 GQSGLRVFFPLCGKAIEMKWFADRG---HTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSI 142 (252)
T ss_dssp TCCSCEEEETTCTTCTHHHHHHHTT---CEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCT
T ss_pred CCCCCeEEEeCCCCcHHHHHHHHCC---CeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcc
Confidence 3577899999999999999999864 39999999999999998765310 0000 0125799999998
Q ss_pred CCCCCCC-CCeeEEEECCCccc--------hhHHHHHhcCCCcEEEEEe
Q psy10572 116 KHGYERE-APYDIIHVSPSYFT--------IPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 116 ~~~~~~~-~~~D~v~~~~~~~~--------~~~~~~~~Lk~gG~l~~~~ 155 (204)
.....+. ++||+|++...+.+ +++++.++|||||++++.+
T Consensus 143 ~~l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~ 191 (252)
T 2gb4_A 143 FDLPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAV 191 (252)
T ss_dssp TTGGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccCCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEE
Confidence 8765543 78999998776643 3578889999999997543
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.67 E-value=6.7e-16 Score=114.14 Aligned_cols=124 Identities=15% Similarity=0.139 Sum_probs=89.9
Q ss_pred ccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceE
Q psy10572 30 DISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQ 109 (204)
Q Consensus 30 ~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~ 109 (204)
......+...+.+.+... .++.+|||+|||+|.++..++... ..+|+++|+|+.+++.|++++...+ +..++++
T Consensus 34 rp~~~~~~~~l~~~l~~~-~~~~~vLDlGcGtG~~~~~~~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~---~~~~~v~ 107 (201)
T 2ift_A 34 RPTGDRVKETLFNWLMPY-IHQSECLDGFAGSGSLGFEALSRQ--AKKVTFLELDKTVANQLKKNLQTLK---CSSEQAE 107 (201)
T ss_dssp ----CHHHHHHHHHHHHH-HTTCEEEETTCTTCHHHHHHHHTT--CSEEEEECSCHHHHHHHHHHHHHTT---CCTTTEE
T ss_pred CcCHHHHHHHHHHHHHHh-cCCCeEEEcCCccCHHHHHHHHcc--CCEEEEEECCHHHHHHHHHHHHHhC---CCccceE
Confidence 334455666666666521 267899999999999999877653 2489999999999999999987743 1115799
Q ss_pred EEEecCCCCCC--CCCC-eeEEEECCCccc-----hhHHH--HHhcCCCcEEEEEecCCC
Q psy10572 110 FVVWNGKHGYE--REAP-YDIIHVSPSYFT-----IPQKL--LDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 110 ~~~~d~~~~~~--~~~~-~D~v~~~~~~~~-----~~~~~--~~~Lk~gG~l~~~~~~~~ 159 (204)
++.+|+..... ..++ ||+|++++++.. +++.+ .++|+|||.+++++....
T Consensus 108 ~~~~d~~~~~~~~~~~~~fD~I~~~~~~~~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~~ 167 (201)
T 2ift_A 108 VINQSSLDFLKQPQNQPHFDVVFLDPPFHFNLAEQAISLLCENNWLKPNALIYVETEKDK 167 (201)
T ss_dssp EECSCHHHHTTSCCSSCCEEEEEECCCSSSCHHHHHHHHHHHTTCEEEEEEEEEEEESSS
T ss_pred EEECCHHHHHHhhccCCCCCEEEECCCCCCccHHHHHHHHHhcCccCCCcEEEEEECCCC
Confidence 99999764332 2467 999999988542 34555 456999999999887665
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-15 Score=116.84 Aligned_cols=117 Identities=21% Similarity=0.260 Sum_probs=94.0
Q ss_pred hHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe
Q psy10572 34 PHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW 113 (204)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 113 (204)
+.....++..+. .+.++.+|||+|||+|..+..+++.. + ++++|+|+++.+++.+++++...+ ...+++++.+
T Consensus 31 ~~~~~~~l~~l~-~~~~~~~vLDiG~G~G~~~~~l~~~~-~-~~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~~~ 103 (257)
T 3f4k_A 31 PEATRKAVSFIN-ELTDDAKIADIGCGTGGQTLFLADYV-K-GQITGIDLFPDFIEIFNENAVKAN----CADRVKGITG 103 (257)
T ss_dssp HHHHHHHHTTSC-CCCTTCEEEEETCTTSHHHHHHHHHC-C-SEEEEEESCHHHHHHHHHHHHHTT----CTTTEEEEEC
T ss_pred HHHHHHHHHHHh-cCCCCCeEEEeCCCCCHHHHHHHHhC-C-CeEEEEECCHHHHHHHHHHHHHcC----CCCceEEEEC
Confidence 344444444442 25678899999999999999999987 3 399999999999999999987743 1245999999
Q ss_pred cCCCCCCCCCCeeEEEECCCccc-----hhHHHHHhcCCCcEEEEEecC
Q psy10572 114 NGKHGYEREAPYDIIHVSPSYFT-----IPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 114 d~~~~~~~~~~~D~v~~~~~~~~-----~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
|+.....+.++||+|+++..+++ +++.+.++|+|||++++..+.
T Consensus 104 d~~~~~~~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 152 (257)
T 3f4k_A 104 SMDNLPFQNEELDLIWSEGAIYNIGFERGMNEWSKYLKKGGFIAVSEAS 152 (257)
T ss_dssp CTTSCSSCTTCEEEEEEESCSCCCCHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred ChhhCCCCCCCEEEEEecChHhhcCHHHHHHHHHHHcCCCcEEEEEEee
Confidence 98776666789999999888766 568899999999999998753
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-15 Score=118.19 Aligned_cols=135 Identities=18% Similarity=0.300 Sum_probs=100.7
Q ss_pred ccccccccccCCcccCChHHHHHHHHHHhccC-CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHh
Q psy10572 17 PYRIKSRQIGYGADISSPHIHAQMLELLKDKI-KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNI 95 (204)
Q Consensus 17 ~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~ 95 (204)
.|++..+....+..++.+.... +++.+...+ .++.+|||+|||+|..+..+++.. +..+++++|+|+.+++.+++++
T Consensus 76 ~f~~~~~~~~~~~~ipr~~te~-l~~~~l~~~~~~~~~vLDlG~GsG~~~~~la~~~-~~~~v~~vD~s~~~l~~a~~n~ 153 (276)
T 2b3t_A 76 EFWSLPLFVSPATLIPRPDTEC-LVEQALARLPEQPCRILDLGTGTGAIALALASER-PDCEIIAVDRMPDAVSLAQRNA 153 (276)
T ss_dssp EETTEEEECCTTSCCCCTTHHH-HHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHC-TTSEEEEECSSHHHHHHHHHHH
T ss_pred EECCceEEeCCCCcccCchHHH-HHHHHHHhcccCCCEEEEecCCccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHH
Confidence 3455555555566666555433 333333223 567799999999999999999887 6679999999999999999998
Q ss_pred hhcCccccCccceEEEEecCCCCCCCCCCeeEEEECCCccc-------------------------------hhHHHHHh
Q psy10572 96 DKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFT-------------------------------IPQKLLDQ 144 (204)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~-------------------------------~~~~~~~~ 144 (204)
...+ .++++++.+|+.... +.++||+|++++++.. +++.+.++
T Consensus 154 ~~~~-----~~~v~~~~~d~~~~~-~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~ 227 (276)
T 2b3t_A 154 QHLA-----IKNIHILQSDWFSAL-AGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNA 227 (276)
T ss_dssp HHHT-----CCSEEEECCSTTGGG-TTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGG
T ss_pred HHcC-----CCceEEEEcchhhhc-ccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHh
Confidence 7643 347999999987643 3468999999976522 34677899
Q ss_pred cCCCcEEEEEecCCC
Q psy10572 145 LVPGGRMVMPVGEPF 159 (204)
Q Consensus 145 Lk~gG~l~~~~~~~~ 159 (204)
|+|||++++......
T Consensus 228 LkpgG~l~~~~~~~~ 242 (276)
T 2b3t_A 228 LVSGGFLLLEHGWQQ 242 (276)
T ss_dssp EEEEEEEEEECCSSC
T ss_pred cCCCCEEEEEECchH
Confidence 999999999876554
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=2.8e-16 Score=117.65 Aligned_cols=104 Identities=13% Similarity=0.156 Sum_probs=86.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC---CCCCCCe
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG---YEREAPY 125 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~~ 125 (204)
+++..|||||||+|.++..+++.. +...++|+|+++.+++.|++++...+ ..|+.++.+|+... .++.++|
T Consensus 33 ~~~~~vLDiGcG~G~~~~~lA~~~-p~~~v~giD~s~~~l~~a~~~~~~~~-----l~nv~~~~~Da~~~l~~~~~~~~~ 106 (218)
T 3dxy_A 33 REAPVTLEIGFGMGASLVAMAKDR-PEQDFLGIEVHSPGVGACLASAHEEG-----LSNLRVMCHDAVEVLHKMIPDNSL 106 (218)
T ss_dssp SCCCEEEEESCTTCHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHTT-----CSSEEEECSCHHHHHHHHSCTTCE
T ss_pred CCCCeEEEEeeeChHHHHHHHHHC-CCCeEEEEEecHHHHHHHHHHHHHhC-----CCcEEEEECCHHHHHHHHcCCCCh
Confidence 467899999999999999999987 67899999999999999999987643 46899999997653 2456899
Q ss_pred eEEEECCCcc--------------chhHHHHHhcCCCcEEEEEecCC
Q psy10572 126 DIIHVSPSYF--------------TIPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 126 D~v~~~~~~~--------------~~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
|.|+++.+.+ .+++.+.++|||||++++.+...
T Consensus 107 d~v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~ 153 (218)
T 3dxy_A 107 RMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWE 153 (218)
T ss_dssp EEEEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCH
T ss_pred heEEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCH
Confidence 9999984432 26788999999999999988644
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.66 E-value=3e-15 Score=114.35 Aligned_cols=120 Identities=26% Similarity=0.280 Sum_probs=98.5
Q ss_pred CChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhc-CccccCccceEE
Q psy10572 32 SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKG-NSELLDQGRVQF 110 (204)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~~~~~~~~ 110 (204)
..+.....++..+. +.++.+|||+|||+|.++..+++..++.++++++|+++.+++.+++++... + .+++.+
T Consensus 80 ~~~~~~~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g-----~~~v~~ 152 (258)
T 2pwy_A 80 TYPKDASAMVTLLD--LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQ-----VENVRF 152 (258)
T ss_dssp CCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-----CCCEEE
T ss_pred ccchHHHHHHHHcC--CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC-----CCCEEE
Confidence 34444455666665 688899999999999999999998646679999999999999999998764 2 357999
Q ss_pred EEecCCCCCCCCCCeeEEEECCCcc-chhHHHHHhcCCCcEEEEEecCC
Q psy10572 111 VVWNGKHGYEREAPYDIIHVSPSYF-TIPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 111 ~~~d~~~~~~~~~~~D~v~~~~~~~-~~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
..+|+.+...+.++||+|+++.+.. .+++.+.++|+|||.+++.++..
T Consensus 153 ~~~d~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 201 (258)
T 2pwy_A 153 HLGKLEEAELEEAAYDGVALDLMEPWKVLEKAALALKPDRFLVAYLPNI 201 (258)
T ss_dssp EESCGGGCCCCTTCEEEEEEESSCGGGGHHHHHHHEEEEEEEEEEESCH
T ss_pred EECchhhcCCCCCCcCEEEECCcCHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence 9999876645557899999987655 57899999999999999988765
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.1e-15 Score=113.68 Aligned_cols=102 Identities=19% Similarity=0.193 Sum_probs=87.0
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
..++.+|||+|||+|.++..+++.. +..+++|+|+++.+++.+++++.. ..++.++.+|+.....+ ++||+
T Consensus 42 ~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~-------~~~~~~~~~d~~~~~~~-~~fD~ 112 (234)
T 3dtn_A 42 DTENPDILDLGAGTGLLSAFLMEKY-PEATFTLVDMSEKMLEIAKNRFRG-------NLKVKYIEADYSKYDFE-EKYDM 112 (234)
T ss_dssp SCSSCEEEEETCTTSHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHTCS-------CTTEEEEESCTTTCCCC-SCEEE
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHhhcc-------CCCEEEEeCchhccCCC-CCceE
Confidence 4577899999999999999999987 677999999999999999998754 23899999998876655 78999
Q ss_pred EEECCCccc--------hhHHHHHhcCCCcEEEEEecCC
Q psy10572 128 IHVSPSYFT--------IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 128 v~~~~~~~~--------~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
|+++..+++ +++++.++|+|||.+++.....
T Consensus 113 v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 151 (234)
T 3dtn_A 113 VVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVH 151 (234)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecC
Confidence 999987765 4578889999999999977544
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.66 E-value=7.5e-16 Score=114.88 Aligned_cols=103 Identities=12% Similarity=0.192 Sum_probs=85.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC--CCCCCee
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY--EREAPYD 126 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D 126 (204)
+++.+|||+|||+|.++..+++.. +..+++|+|+++.+++.|++++...+ .+++.++.+|+.... ++.++||
T Consensus 37 ~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~giD~s~~~l~~a~~~~~~~~-----~~nv~~~~~d~~~l~~~~~~~~~d 110 (213)
T 2fca_A 37 NDNPIHIEVGTGKGQFISGMAKQN-PDINYIGIELFKSVIVTAVQKVKDSE-----AQNVKLLNIDADTLTDVFEPGEVK 110 (213)
T ss_dssp SCCCEEEEECCTTSHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHSC-----CSSEEEECCCGGGHHHHCCTTSCC
T ss_pred CCCceEEEEecCCCHHHHHHHHHC-CCCCEEEEEechHHHHHHHHHHHHcC-----CCCEEEEeCCHHHHHhhcCcCCcC
Confidence 567899999999999999999987 67899999999999999999987643 468999999987532 4557899
Q ss_pred EEEECCCcc--------------chhHHHHHhcCCCcEEEEEecC
Q psy10572 127 IIHVSPSYF--------------TIPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 127 ~v~~~~~~~--------------~~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
.|+++.+.+ .+++.+.++|+|||.+++.+..
T Consensus 111 ~v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~ 155 (213)
T 2fca_A 111 RVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDN 155 (213)
T ss_dssp EEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESC
T ss_pred EEEEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCC
Confidence 998875432 3578899999999999998744
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=5.6e-16 Score=118.73 Aligned_cols=102 Identities=17% Similarity=0.220 Sum_probs=87.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
+.++.+|||+|||+|.++..+++.. .++++|+|+|+.+++.++++... .++++++.+|+.....+.++||+
T Consensus 53 ~~~~~~vLdiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~-------~~~~~~~~~d~~~~~~~~~~fD~ 123 (266)
T 3ujc_A 53 LNENSKVLDIGSGLGGGCMYINEKY--GAHTHGIDICSNIVNMANERVSG-------NNKIIFEANDILTKEFPENNFDL 123 (266)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHTCCS-------CTTEEEEECCTTTCCCCTTCEEE
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhhc-------CCCeEEEECccccCCCCCCcEEE
Confidence 4678899999999999999999976 35999999999999999988654 15899999998877666789999
Q ss_pred EEECCCccch--------hHHHHHhcCCCcEEEEEecCC
Q psy10572 128 IHVSPSYFTI--------PQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 128 v~~~~~~~~~--------~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
|++...++++ ++++.++|+|||.+++..+..
T Consensus 124 v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 162 (266)
T 3ujc_A 124 IYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCA 162 (266)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred EeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEecc
Confidence 9999888775 578899999999999987543
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.66 E-value=1e-15 Score=115.87 Aligned_cols=109 Identities=17% Similarity=0.199 Sum_probs=90.5
Q ss_pred HHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC
Q psy10572 40 MLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY 119 (204)
Q Consensus 40 ~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 119 (204)
+...+..++.++.+|||+|||+|.++..+++.. .+++|+|+++.+++.++++.. ..++.++.+|+....
T Consensus 43 ~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~--------~~~~~~~~~d~~~~~ 111 (242)
T 3l8d_A 43 IIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRTG---YKAVGVDISEVMIQKGKERGE--------GPDLSFIKGDLSSLP 111 (242)
T ss_dssp HHHHHHHHSCTTCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHTTTC--------BTTEEEEECBTTBCS
T ss_pred HHHHHHHHcCCCCeEEEEcCCCCHHHHHHHHcC---CeEEEEECCHHHHHHHHhhcc--------cCCceEEEcchhcCC
Confidence 444444456788999999999999999999863 499999999999999988742 357999999988766
Q ss_pred CCCCCeeEEEECCCccc------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 120 EREAPYDIIHVSPSYFT------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 120 ~~~~~~D~v~~~~~~~~------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
.+.++||+|++...+++ +++.+.++|+|||.+++.++...
T Consensus 112 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 157 (242)
T 3l8d_A 112 FENEQFEAIMAINSLEWTEEPLRALNEIKRVLKSDGYACIAILGPT 157 (242)
T ss_dssp SCTTCEEEEEEESCTTSSSCHHHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred CCCCCccEEEEcChHhhccCHHHHHHHHHHHhCCCeEEEEEEcCCc
Confidence 66789999999888775 56889999999999999886554
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.5e-15 Score=117.63 Aligned_cols=126 Identities=26% Similarity=0.323 Sum_probs=101.2
Q ss_pred CcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhc-CccccCcc
Q psy10572 28 GADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKG-NSELLDQG 106 (204)
Q Consensus 28 ~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~~~~ 106 (204)
+..+..+.....++..+. +.++.+|||+|||+|.++..+++..++.++++++|+++.+++.|++++... + ....
T Consensus 79 ~~~~~~~~~~~~i~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g---~~~~ 153 (280)
T 1i9g_A 79 GPQVIYPKDAAQIVHEGD--IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYG---QPPD 153 (280)
T ss_dssp CSCCCCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHT---SCCT
T ss_pred cceeecHHHHHHHHHHcC--CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC---CCCC
Confidence 344445556666777665 788899999999999999999997656679999999999999999998763 1 0135
Q ss_pred ceEEEEecCCCCCCCCCCeeEEEECCCcc-chhHHHHHhcCCCcEEEEEecCC
Q psy10572 107 RVQFVVWNGKHGYEREAPYDIIHVSPSYF-TIPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 107 ~~~~~~~d~~~~~~~~~~~D~v~~~~~~~-~~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
+++++.+|+.....+.++||+|+++.+.. .+++.+.++|+|||++++.++..
T Consensus 154 ~v~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 206 (280)
T 1i9g_A 154 NWRLVVSDLADSELPDGSVDRAVLDMLAPWEVLDAVSRLLVAGGVLMVYVATV 206 (280)
T ss_dssp TEEEECSCGGGCCCCTTCEEEEEEESSCGGGGHHHHHHHEEEEEEEEEEESSH
T ss_pred cEEEEECchHhcCCCCCceeEEEECCcCHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence 79999999877655567899999987655 57899999999999999988753
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.9e-15 Score=118.31 Aligned_cols=103 Identities=18% Similarity=0.173 Sum_probs=87.0
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
+.++.+|||+|||+|.++..+++..+ ++++|+|+|+.+++.|++++...+ ...+++++.+|+.+. .++||+
T Consensus 70 ~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~---~~~fD~ 140 (302)
T 3hem_A 70 LEPGMTLLDIGCGWGSTMRHAVAEYD--VNVIGLTLSENQYAHDKAMFDEVD----SPRRKEVRIQGWEEF---DEPVDR 140 (302)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEECCHHHHHHHHHHHHHSC----CSSCEEEEECCGGGC---CCCCSE
T ss_pred CCCcCEEEEeeccCcHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHhcC----CCCceEEEECCHHHc---CCCccE
Confidence 47888999999999999999999863 599999999999999999987643 124799999998664 578999
Q ss_pred EEECCCccch---------------hHHHHHhcCCCcEEEEEecCCC
Q psy10572 128 IHVSPSYFTI---------------PQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 128 v~~~~~~~~~---------------~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
|+++..++++ ++++.++|||||++++......
T Consensus 141 v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 187 (302)
T 3hem_A 141 IVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIP 187 (302)
T ss_dssp EEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECC
T ss_pred EEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEecc
Confidence 9998877655 5788899999999999776543
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=7.1e-16 Score=114.90 Aligned_cols=99 Identities=16% Similarity=0.229 Sum_probs=83.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
..++.+|||+|||+|.++..+++.. .+++|+|+++.+++.+++++.. .++++++.+|+.... +.++||+
T Consensus 49 ~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~-------~~~~~~~~~d~~~~~-~~~~fD~ 117 (216)
T 3ofk_A 49 SGAVSNGLEIGCAAGAFTEKLAPHC---KRLTVIDVMPRAIGRACQRTKR-------WSHISWAATDILQFS-TAELFDL 117 (216)
T ss_dssp TSSEEEEEEECCTTSHHHHHHGGGE---EEEEEEESCHHHHHHHHHHTTT-------CSSEEEEECCTTTCC-CSCCEEE
T ss_pred cCCCCcEEEEcCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHhccc-------CCCeEEEEcchhhCC-CCCCccE
Confidence 4566899999999999999998875 3999999999999999998765 247999999987765 5678999
Q ss_pred EEECCCccc---------hhHHHHHhcCCCcEEEEEecC
Q psy10572 128 IHVSPSYFT---------IPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 128 v~~~~~~~~---------~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
|+++..+++ +++.+.++|+|||.+++.++.
T Consensus 118 v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 156 (216)
T 3ofk_A 118 IVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSAR 156 (216)
T ss_dssp EEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred EEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 999977755 256888999999999997643
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.66 E-value=2.5e-15 Score=117.27 Aligned_cols=116 Identities=15% Similarity=0.105 Sum_probs=93.1
Q ss_pred HHHHHHHHHh--ccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe
Q psy10572 36 IHAQMLELLK--DKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW 113 (204)
Q Consensus 36 ~~~~~~~~l~--~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 113 (204)
....+++.+. ..+.++.+|||+|||+|..+..+++..+ ++++|+|+++.+++.++++....+ ..++++++.+
T Consensus 66 ~~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~----~~~~~~~~~~ 139 (297)
T 2o57_A 66 TDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFG--VSIDCLNIAPVQNKRNEEYNNQAG----LADNITVKYG 139 (297)
T ss_dssp HHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHHHT----CTTTEEEEEC
T ss_pred HHHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHhcC----CCcceEEEEc
Confidence 3344555551 1257888999999999999999998863 499999999999999999886643 1257999999
Q ss_pred cCCCCCCCCCCeeEEEECCCccc------hhHHHHHhcCCCcEEEEEecC
Q psy10572 114 NGKHGYEREAPYDIIHVSPSYFT------IPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 114 d~~~~~~~~~~~D~v~~~~~~~~------~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
|+....++.++||+|++...+++ +++++.++|||||++++..+.
T Consensus 140 d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 189 (297)
T 2o57_A 140 SFLEIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPM 189 (297)
T ss_dssp CTTSCSSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CcccCCCCCCCEeEEEecchhhhcCCHHHHHHHHHHHcCCCeEEEEEEec
Confidence 98876666789999999888765 468999999999999998753
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.3e-15 Score=115.94 Aligned_cols=104 Identities=21% Similarity=0.271 Sum_probs=87.7
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
+.++.+|||+|||+|.++..+++.. .++++|+|+|+.+++.+++++...+ ..+++.++.+|+.....+.++||+
T Consensus 59 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~----~~~~~~~~~~d~~~~~~~~~~fD~ 132 (273)
T 3bus_A 59 VRSGDRVLDVGCGIGKPAVRLATAR--DVRVTGISISRPQVNQANARATAAG----LANRVTFSYADAMDLPFEDASFDA 132 (273)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHS--CCEEEEEESCHHHHHHHHHHHHHTT----CTTTEEEEECCTTSCCSCTTCEEE
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHhcC----CCcceEEEECccccCCCCCCCccE
Confidence 4678899999999999999999875 3699999999999999999887643 124799999998876666789999
Q ss_pred EEECCCccc------hhHHHHHhcCCCcEEEEEecC
Q psy10572 128 IHVSPSYFT------IPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 128 v~~~~~~~~------~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
|++...+++ +++++.++|||||++++..+.
T Consensus 133 v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 168 (273)
T 3bus_A 133 VWALESLHHMPDRGRALREMARVLRPGGTVAIADFV 168 (273)
T ss_dssp EEEESCTTTSSCHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred EEEechhhhCCCHHHHHHHHHHHcCCCeEEEEEEee
Confidence 999887766 457889999999999997753
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1.7e-15 Score=117.67 Aligned_cols=117 Identities=17% Similarity=0.206 Sum_probs=94.7
Q ss_pred ChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEE
Q psy10572 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVV 112 (204)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 112 (204)
++.....+.+.+. .+.++.+|||+|||+|.++..+++..+..++++|+|+++.+++.+++++...+ .+++++.
T Consensus 6 ~~~~~~~~~~~~~-~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~------~~v~~~~ 78 (284)
T 3gu3_A 6 NDDYVSFLVNTVW-KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP------YDSEFLE 78 (284)
T ss_dssp CHHHHHHHHHTTS-CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSS------SEEEEEE
T ss_pred chHHHHHHHHHHh-ccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcC------CceEEEE
Confidence 4455555655553 25678899999999999999999987334799999999999999999987632 3899999
Q ss_pred ecCCCCCCCCCCeeEEEECCCccc------hhHHHHHhcCCCcEEEEEecC
Q psy10572 113 WNGKHGYEREAPYDIIHVSPSYFT------IPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 113 ~d~~~~~~~~~~~D~v~~~~~~~~------~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
+|+..... .++||+|+++..+.+ +++++.++|+|||++++..+.
T Consensus 79 ~d~~~~~~-~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 79 GDATEIEL-NDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp SCTTTCCC-SSCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred cchhhcCc-CCCeeEEEECChhhcCCCHHHHHHHHHHHcCCCCEEEEEecc
Confidence 99887555 468999999887765 458899999999999998776
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.65 E-value=7.5e-16 Score=116.32 Aligned_cols=117 Identities=17% Similarity=0.248 Sum_probs=93.4
Q ss_pred ccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceE
Q psy10572 30 DISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQ 109 (204)
Q Consensus 30 ~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~ 109 (204)
.+..+.....+...+. ..++.+|||+|||+|..+..+++.. +.++++++|+++.+++.|++++...+ ..++++
T Consensus 53 ~~~~~~~~~~l~~~~~--~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~----~~~~v~ 125 (232)
T 3ntv_A 53 PIVDRLTLDLIKQLIR--MNNVKNILEIGTAIGYSSMQFASIS-DDIHVTTIERNETMIQYAKQNLATYH----FENQVR 125 (232)
T ss_dssp CCCCHHHHHHHHHHHH--HHTCCEEEEECCSSSHHHHHHHTTC-TTCEEEEEECCHHHHHHHHHHHHHTT----CTTTEE
T ss_pred CCcCHHHHHHHHHHHh--hcCCCEEEEEeCchhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcC----CCCcEE
Confidence 3445666666666555 4677899999999999999999965 56799999999999999999987743 124899
Q ss_pred EEEecCCCCCC--CCCCeeEEEECCCccc---hhHHHHHhcCCCcEEEE
Q psy10572 110 FVVWNGKHGYE--REAPYDIIHVSPSYFT---IPQKLLDQLVPGGRMVM 153 (204)
Q Consensus 110 ~~~~d~~~~~~--~~~~~D~v~~~~~~~~---~~~~~~~~Lk~gG~l~~ 153 (204)
++.+|+.+... ..++||+|+++..... +++.+.++|+|||++++
T Consensus 126 ~~~~d~~~~~~~~~~~~fD~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~ 174 (232)
T 3ntv_A 126 IIEGNALEQFENVNDKVYDMIFIDAAKAQSKKFFEIYTPLLKHQGLVIT 174 (232)
T ss_dssp EEESCGGGCHHHHTTSCEEEEEEETTSSSHHHHHHHHGGGEEEEEEEEE
T ss_pred EEECCHHHHHHhhccCCccEEEEcCcHHHHHHHHHHHHHhcCCCeEEEE
Confidence 99999876432 1478999999877654 45888899999999988
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.3e-15 Score=113.14 Aligned_cols=112 Identities=18% Similarity=0.222 Sum_probs=91.0
Q ss_pred HHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC
Q psy10572 39 QMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG 118 (204)
Q Consensus 39 ~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~ 118 (204)
.+...+..++.++.+|||+|||+|.++..+++.. .. +++++|+++.+++.++++... .+++.++.+|+...
T Consensus 31 ~~~~~l~~~~~~~~~vLdiGcG~G~~~~~l~~~~-~~-~v~~~D~s~~~~~~a~~~~~~-------~~~i~~~~~d~~~~ 101 (215)
T 2pxx_A 31 SFRALLEPELRPEDRILVLGCGNSALSYELFLGG-FP-NVTSVDYSSVVVAAMQACYAH-------VPQLRWETMDVRKL 101 (215)
T ss_dssp HHHHHHGGGCCTTCCEEEETCTTCSHHHHHHHTT-CC-CEEEEESCHHHHHHHHHHTTT-------CTTCEEEECCTTSC
T ss_pred HHHHHHHHhcCCCCeEEEECCCCcHHHHHHHHcC-CC-cEEEEeCCHHHHHHHHHhccc-------CCCcEEEEcchhcC
Confidence 3555566567888999999999999999998874 32 899999999999999988754 25789999998776
Q ss_pred CCCCCCeeEEEECCCcc---------------------chhHHHHHhcCCCcEEEEEecCCC
Q psy10572 119 YEREAPYDIIHVSPSYF---------------------TIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 119 ~~~~~~~D~v~~~~~~~---------------------~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
..+.++||+|+++.+++ .+++++.++|+|||.+++..++..
T Consensus 102 ~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~ 163 (215)
T 2pxx_A 102 DFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAP 163 (215)
T ss_dssp CSCSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCH
T ss_pred CCCCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCCc
Confidence 56667899999876552 245788899999999999887764
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.2e-15 Score=117.84 Aligned_cols=104 Identities=26% Similarity=0.333 Sum_probs=89.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
+.++.+|||+|||+|.++..+++.. +..+++++|+++.+++.+++++...+ .++++++.+|+.....+.++||+
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~fD~ 108 (276)
T 3mgg_A 35 YPPGAKVLEAGCGIGAQTVILAKNN-PDAEITSIDISPESLEKARENTEKNG-----IKNVKFLQANIFSLPFEDSSFDH 108 (276)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHTT-----CCSEEEEECCGGGCCSCTTCEEE
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcC-----CCCcEEEEcccccCCCCCCCeeE
Confidence 4678899999999999999999986 66799999999999999999987643 35799999998876666789999
Q ss_pred EEECCCccc------hhHHHHHhcCCCcEEEEEecC
Q psy10572 128 IHVSPSYFT------IPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 128 v~~~~~~~~------~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
|+++..+++ +++.+.++|+|||.+++..+.
T Consensus 109 v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 144 (276)
T 3mgg_A 109 IFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIEGD 144 (276)
T ss_dssp EEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EEEechhhhcCCHHHHHHHHHHHcCCCcEEEEEEcC
Confidence 999887755 458899999999999997654
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.65 E-value=8.6e-16 Score=115.20 Aligned_cols=101 Identities=12% Similarity=0.155 Sum_probs=83.2
Q ss_pred CCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC--CCCCCeeEE
Q psy10572 51 GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY--EREAPYDII 128 (204)
Q Consensus 51 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~v 128 (204)
+.+|||+|||+|..+..+++.++++++++++|+++.+++.|++++...+ ...++++++.+|+.+.. ...++||+|
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g---~~~~~i~~~~gda~~~l~~~~~~~fD~V 133 (221)
T 3dr5_A 57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAG---YSPSRVRFLLSRPLDVMSRLANDSYQLV 133 (221)
T ss_dssp CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTT---CCGGGEEEECSCHHHHGGGSCTTCEEEE
T ss_pred CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC---CCcCcEEEEEcCHHHHHHHhcCCCcCeE
Confidence 3499999999999999999987557899999999999999999998744 11148999999876432 224789999
Q ss_pred EECCCccc---hhHHHHHhcCCCcEEEEE
Q psy10572 129 HVSPSYFT---IPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 129 ~~~~~~~~---~~~~~~~~Lk~gG~l~~~ 154 (204)
+++..... +++.+.++|+|||++++.
T Consensus 134 ~~d~~~~~~~~~l~~~~~~LkpGG~lv~d 162 (221)
T 3dr5_A 134 FGQVSPMDLKALVDAAWPLLRRGGALVLA 162 (221)
T ss_dssp EECCCTTTHHHHHHHHHHHEEEEEEEEET
T ss_pred EEcCcHHHHHHHHHHHHHHcCCCcEEEEe
Confidence 99877654 568889999999999984
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=3.7e-15 Score=115.77 Aligned_cols=134 Identities=19% Similarity=0.264 Sum_probs=100.9
Q ss_pred ccccccccccCCcccCChHHHH---HHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHH
Q psy10572 17 PYRIKSRQIGYGADISSPHIHA---QMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIK 93 (204)
Q Consensus 17 ~y~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~ 93 (204)
.|++..+....+.+++.+.... .+.+.+. ..++.+|||+|||+|.++..+++. +.++++|+|+|+.+++.|++
T Consensus 89 ~f~~~~~~v~~~~lipr~~te~lv~~~l~~~~--~~~~~~vLDlG~GsG~~~~~la~~--~~~~v~~vDis~~al~~A~~ 164 (284)
T 1nv8_A 89 EFMGLSFLVEEGVFVPRPETEELVELALELIR--KYGIKTVADIGTGSGAIGVSVAKF--SDAIVFATDVSSKAVEIARK 164 (284)
T ss_dssp EETTEEEECCTTSCCCCTTHHHHHHHHHHHHH--HHTCCEEEEESCTTSHHHHHHHHH--SSCEEEEEESCHHHHHHHHH
T ss_pred EECCeEEEeCCCceecChhHHHHHHHHHHHhc--ccCCCEEEEEeCchhHHHHHHHHC--CCCEEEEEECCHHHHHHHHH
Confidence 4556666666677766654433 3333332 236679999999999999999988 56799999999999999999
Q ss_pred HhhhcCccccCccceEEEEecCCCCCCCCCCe---eEEEECCCcc-------------------------chhHHHH-Hh
Q psy10572 94 NIDKGNSELLDQGRVQFVVWNGKHGYEREAPY---DIIHVSPSYF-------------------------TIPQKLL-DQ 144 (204)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~---D~v~~~~~~~-------------------------~~~~~~~-~~ 144 (204)
++..++. ..+++++++|+..... ++| |+|++|+++. .+.+.+. +.
T Consensus 165 n~~~~~l----~~~v~~~~~D~~~~~~--~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~ 238 (284)
T 1nv8_A 165 NAERHGV----SDRFFVRKGEFLEPFK--EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRY 238 (284)
T ss_dssp HHHHTTC----TTSEEEEESSTTGGGG--GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHC
T ss_pred HHHHcCC----CCceEEEECcchhhcc--cccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhc
Confidence 9887441 2359999999876432 468 9999997653 2457888 99
Q ss_pred cCCCcEEEEEecCCCC
Q psy10572 145 LVPGGRMVMPVGEPFK 160 (204)
Q Consensus 145 Lk~gG~l~~~~~~~~~ 160 (204)
|+|||.+++.+...+.
T Consensus 239 l~pgG~l~~e~~~~q~ 254 (284)
T 1nv8_A 239 DTSGKIVLMEIGEDQV 254 (284)
T ss_dssp CCTTCEEEEECCTTCH
T ss_pred CCCCCEEEEEECchHH
Confidence 9999999998877664
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.64 E-value=4.2e-15 Score=118.96 Aligned_cols=120 Identities=23% Similarity=0.279 Sum_probs=98.0
Q ss_pred CChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEE
Q psy10572 32 SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV 111 (204)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 111 (204)
..+.+...++.... ..++.+|||+|||+|.+++.++...++..+++|+|+++.+++.|++++...+ ..++++.
T Consensus 187 l~~~la~~l~~~~~--~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g-----~~~i~~~ 259 (354)
T 3tma_A 187 LTPVLAQALLRLAD--ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASG-----LSWIRFL 259 (354)
T ss_dssp CCHHHHHHHHHHTT--CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTT-----CTTCEEE
T ss_pred cCHHHHHHHHHHhC--CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcC-----CCceEEE
Confidence 44555666666555 6788899999999999999999987445699999999999999999998754 3379999
Q ss_pred EecCCCCCCCCCCeeEEEECCCccc--------------hhHHHHHhcCCCcEEEEEecCC
Q psy10572 112 VWNGKHGYEREAPYDIIHVSPSYFT--------------IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 112 ~~d~~~~~~~~~~~D~v~~~~~~~~--------------~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
++|+.....+...||+|++|+++.. +.+.+.++|+|||.+++.+++.
T Consensus 260 ~~D~~~~~~~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~~ 320 (354)
T 3tma_A 260 RADARHLPRFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLRP 320 (354)
T ss_dssp ECCGGGGGGTCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESCH
T ss_pred eCChhhCccccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence 9998876555567999999988742 4467889999999999988876
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.64 E-value=2e-15 Score=111.70 Aligned_cols=122 Identities=18% Similarity=0.143 Sum_probs=89.8
Q ss_pred ccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceE
Q psy10572 30 DISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQ 109 (204)
Q Consensus 30 ~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~ 109 (204)
......+...+.+.+... .++.+|||+|||+|.++..++... ..+|+++|+++.+++.|++++...+ .++++
T Consensus 35 rp~~~~~~~~l~~~l~~~-~~~~~vLDlgcG~G~~~~~l~~~~--~~~V~~vD~s~~~l~~a~~~~~~~~-----~~~v~ 106 (202)
T 2fpo_A 35 RPTTDRVRETLFNWLAPV-IVDAQCLDCFAGSGALGLEALSRY--AAGATLIEMDRAVSQQLIKNLATLK-----AGNAR 106 (202)
T ss_dssp ---CHHHHHHHHHHHHHH-HTTCEEEETTCTTCHHHHHHHHTT--CSEEEEECSCHHHHHHHHHHHHHTT-----CCSEE
T ss_pred CCCHHHHHHHHHHHHHhh-cCCCeEEEeCCCcCHHHHHHHhcC--CCEEEEEECCHHHHHHHHHHHHHcC-----CCcEE
Confidence 334555666666666521 267899999999999999877754 2389999999999999999987743 35899
Q ss_pred EEEecCCCC-CCCCCCeeEEEECCCcc-----chhHHHHH--hcCCCcEEEEEecCCC
Q psy10572 110 FVVWNGKHG-YEREAPYDIIHVSPSYF-----TIPQKLLD--QLVPGGRMVMPVGEPF 159 (204)
Q Consensus 110 ~~~~d~~~~-~~~~~~~D~v~~~~~~~-----~~~~~~~~--~Lk~gG~l~~~~~~~~ 159 (204)
++++|+... ....++||+|+++++++ .+++.+.+ +|+|||++++.+....
T Consensus 107 ~~~~D~~~~~~~~~~~fD~V~~~~p~~~~~~~~~l~~l~~~~~L~pgG~l~i~~~~~~ 164 (202)
T 2fpo_A 107 VVNSNAMSFLAQKGTPHNIVFVDPPFRRGLLEETINLLEDNGWLADEALIYVESEVEN 164 (202)
T ss_dssp EECSCHHHHHSSCCCCEEEEEECCSSSTTTHHHHHHHHHHTTCEEEEEEEEEEEEGGG
T ss_pred EEECCHHHHHhhcCCCCCEEEECCCCCCCcHHHHHHHHHhcCccCCCcEEEEEECCCc
Confidence 999997652 22346899999998854 24455544 4999999999887644
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.5e-15 Score=119.76 Aligned_cols=126 Identities=20% Similarity=0.172 Sum_probs=96.9
Q ss_pred CcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccc
Q psy10572 28 GADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGR 107 (204)
Q Consensus 28 ~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~ 107 (204)
|....+..........+. +.++.+|||+|||+|..+..++...++.++++++|+++.+++.+++++...+ ..+
T Consensus 98 G~~~~qd~~s~l~~~~l~--~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g-----~~~ 170 (315)
T 1ixk_A 98 GLIYIQEASSMYPPVALD--PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLG-----VLN 170 (315)
T ss_dssp TSEEECCHHHHHHHHHHC--CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHT-----CCS
T ss_pred ceEEEeCHHHHHHHHHhC--CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhC-----CCe
Confidence 333334444444455555 6788999999999999999999987455799999999999999999987744 457
Q ss_pred eEEEEecCCCCCCCCCCeeEEEECCCcc----------------------------chhHHHHHhcCCCcEEEEEecCCC
Q psy10572 108 VQFVVWNGKHGYEREAPYDIIHVSPSYF----------------------------TIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 108 ~~~~~~d~~~~~~~~~~~D~v~~~~~~~----------------------------~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
+.++.+|+.......++||+|++++++. .+++.+.++|||||++++++++..
T Consensus 171 v~~~~~D~~~~~~~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~ 250 (315)
T 1ixk_A 171 VILFHSSSLHIGELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLE 250 (315)
T ss_dssp EEEESSCGGGGGGGCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCC
T ss_pred EEEEECChhhcccccccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCC
Confidence 9999999775433346799999976631 345778899999999999887654
Q ss_pred C
Q psy10572 160 K 160 (204)
Q Consensus 160 ~ 160 (204)
.
T Consensus 251 ~ 251 (315)
T 1ixk_A 251 P 251 (315)
T ss_dssp G
T ss_pred h
Confidence 3
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.64 E-value=6.5e-15 Score=107.40 Aligned_cols=114 Identities=17% Similarity=0.165 Sum_probs=93.3
Q ss_pred HHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccc--eEEEE
Q psy10572 35 HIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGR--VQFVV 112 (204)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ 112 (204)
.....+++.+. ..++.+|||+|||+|.++..+++. ..+++++|+++.+++.+++++...+ ..+ ++++.
T Consensus 39 ~~~~~l~~~~~--~~~~~~vLdiG~G~G~~~~~~~~~---~~~v~~~D~~~~~~~~a~~~~~~~~-----~~~~~~~~~~ 108 (194)
T 1dus_A 39 KGTKILVENVV--VDKDDDILDLGCGYGVIGIALADE---VKSTTMADINRRAIKLAKENIKLNN-----LDNYDIRVVH 108 (194)
T ss_dssp HHHHHHHHHCC--CCTTCEEEEETCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHTT-----CTTSCEEEEE
T ss_pred hHHHHHHHHcc--cCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHHHcC-----CCccceEEEE
Confidence 45666666665 568889999999999999999887 3499999999999999999987643 344 99999
Q ss_pred ecCCCCCCCCCCeeEEEECCCccc-------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 113 WNGKHGYEREAPYDIIHVSPSYFT-------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 113 ~d~~~~~~~~~~~D~v~~~~~~~~-------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
+|+.... +.++||+|+++.++++ +++.+.++|+|||.+++.++...
T Consensus 109 ~d~~~~~-~~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~ 161 (194)
T 1dus_A 109 SDLYENV-KDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTKQ 161 (194)
T ss_dssp CSTTTTC-TTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEESTH
T ss_pred Cchhccc-ccCCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEECCCC
Confidence 9987643 3568999999988753 45788899999999999988764
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.64 E-value=4.1e-15 Score=108.13 Aligned_cols=125 Identities=15% Similarity=0.211 Sum_probs=94.3
Q ss_pred ccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceE
Q psy10572 30 DISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQ 109 (204)
Q Consensus 30 ~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~ 109 (204)
......+...+.+.+.. ..++.+|||+|||+|.++..+++. +..+++++|+++.+++.|++++...+ ..++++
T Consensus 25 rp~~~~~~~~~~~~l~~-~~~~~~vLD~GcG~G~~~~~~~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~----~~~~~~ 97 (187)
T 2fhp_A 25 RPTTDKVKESIFNMIGP-YFDGGMALDLYSGSGGLAIEAVSR--GMDKSICIEKNFAALKVIKENIAITK----EPEKFE 97 (187)
T ss_dssp CCCCHHHHHHHHHHHCS-CCSSCEEEETTCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHT----CGGGEE
T ss_pred CcCHHHHHHHHHHHHHh-hcCCCCEEEeCCccCHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHHhC----CCcceE
Confidence 34455666667766642 357789999999999999988874 34599999999999999999987643 124799
Q ss_pred EEEecCCCCCC----CCCCeeEEEECCCccc-----hhHHH--HHhcCCCcEEEEEecCCCCc
Q psy10572 110 FVVWNGKHGYE----REAPYDIIHVSPSYFT-----IPQKL--LDQLVPGGRMVMPVGEPFKG 161 (204)
Q Consensus 110 ~~~~d~~~~~~----~~~~~D~v~~~~~~~~-----~~~~~--~~~Lk~gG~l~~~~~~~~~~ 161 (204)
++.+|+..... ..++||+|+++.++.. ..+.+ .++|+|||.+++.++.....
T Consensus 98 ~~~~d~~~~~~~~~~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~~~ 160 (187)
T 2fhp_A 98 VRKMDANRALEQFYEEKLQFDLVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIVCETDKTVKL 160 (187)
T ss_dssp EEESCHHHHHHHHHHTTCCEEEEEECCCGGGCCHHHHHHHHHHTTCEEEEEEEEEEEETTCCC
T ss_pred EEECcHHHHHHHHHhcCCCCCEEEECCCCCchhHHHHHHHHHHhcccCCCCEEEEEeCCcccc
Confidence 99999765321 1468999999988542 33455 67799999999988877643
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.2e-15 Score=115.45 Aligned_cols=109 Identities=15% Similarity=0.080 Sum_probs=84.5
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcC-ccccCccceEEEEecCCCC-C--CCCC
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGN-SELLDQGRVQFVVWNGKHG-Y--EREA 123 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~d~~~~-~--~~~~ 123 (204)
..++.+|||||||+|.++..+++.. +...++|+|+++.+++.|++++.... .......++.++.+|+... . ++.+
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~ 122 (235)
T 3ckk_A 44 AQAQVEFADIGCGYGGLLVELSPLF-PDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKG 122 (235)
T ss_dssp --CCEEEEEETCTTCHHHHHHGGGS-TTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTT
T ss_pred cCCCCeEEEEccCCcHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCc
Confidence 4667799999999999999999887 67799999999999999998765310 0001246899999998752 2 4567
Q ss_pred CeeEEEECCCcc--------------chhHHHHHhcCCCcEEEEEecC
Q psy10572 124 PYDIIHVSPSYF--------------TIPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 124 ~~D~v~~~~~~~--------------~~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
+||.|+++.+.+ .+++.+.++|+|||.|++.+..
T Consensus 123 ~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~ 170 (235)
T 3ckk_A 123 QLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDV 170 (235)
T ss_dssp CEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESC
T ss_pred CeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCC
Confidence 899998876543 3678899999999999997754
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.8e-15 Score=120.69 Aligned_cols=115 Identities=18% Similarity=0.283 Sum_probs=91.3
Q ss_pred HHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC
Q psy10572 39 QMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG 118 (204)
Q Consensus 39 ~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~ 118 (204)
.+++.+. ..++.+|||+|||+|.++..+++.. +..+++++|+++.+++.+++++..++.. ...+++++.+|+...
T Consensus 213 ~ll~~l~--~~~~~~VLDlGcG~G~~s~~la~~~-p~~~V~gvD~s~~al~~Ar~n~~~ngl~--~~~~v~~~~~D~~~~ 287 (375)
T 4dcm_A 213 FFMQHLP--ENLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMPE--ALDRCEFMINNALSG 287 (375)
T ss_dssp HHHHTCC--CSCCSEEEEETCTTCHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHCGG--GGGGEEEEECSTTTT
T ss_pred HHHHhCc--ccCCCeEEEEeCcchHHHHHHHHHC-CCCEEEEEECcHHHHHHHHHHHHHcCCC--cCceEEEEechhhcc
Confidence 4444443 3456899999999999999999987 6779999999999999999998875410 113688999998774
Q ss_pred CCCCCCeeEEEECCCccc-----------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 119 YEREAPYDIIHVSPSYFT-----------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 119 ~~~~~~~D~v~~~~~~~~-----------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
.+.++||+|+++++++. +++.+.++|+|||++++++....
T Consensus 288 -~~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~~ 338 (375)
T 4dcm_A 288 -VEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHL 338 (375)
T ss_dssp -CCTTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEETTS
T ss_pred -CCCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEECCc
Confidence 34578999999988763 46888999999999999876554
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.64 E-value=2e-15 Score=111.65 Aligned_cols=115 Identities=12% Similarity=0.096 Sum_probs=91.4
Q ss_pred HHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEec
Q psy10572 35 HIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWN 114 (204)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d 114 (204)
.....+.+.+...+.++.+|||+|||+|.++..+++. +..+++++|+++.+++.|++++...+ ..+++++.+|
T Consensus 45 ~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~v~~~~~d 117 (205)
T 3grz_A 45 QTTQLAMLGIERAMVKPLTVADVGTGSGILAIAAHKL--GAKSVLATDISDESMTAAEENAALNG-----IYDIALQKTS 117 (205)
T ss_dssp HHHHHHHHHHHHHCSSCCEEEEETCTTSHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTT-----CCCCEEEESS
T ss_pred ccHHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHcC-----CCceEEEecc
Confidence 3445556666655678899999999999999998875 34599999999999999999987643 3458999999
Q ss_pred CCCCCCCCCCeeEEEECCCccch---hHHHHHhcCCCcEEEEEecCC
Q psy10572 115 GKHGYEREAPYDIIHVSPSYFTI---PQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 115 ~~~~~~~~~~~D~v~~~~~~~~~---~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
+.... .++||+|+++.+.+++ ++.+.++|+|||++++.....
T Consensus 118 ~~~~~--~~~fD~i~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 162 (205)
T 3grz_A 118 LLADV--DGKFDLIVANILAEILLDLIPQLDSHLNEDGQVIFSGIDY 162 (205)
T ss_dssp TTTTC--CSCEEEEEEESCHHHHHHHGGGSGGGEEEEEEEEEEEEEG
T ss_pred ccccC--CCCceEEEECCcHHHHHHHHHHHHHhcCCCCEEEEEecCc
Confidence 87643 3789999999887653 577789999999999975443
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.1e-15 Score=115.84 Aligned_cols=107 Identities=17% Similarity=0.203 Sum_probs=86.7
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhh---cCccccCccceEEEEecCCCC------
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK---GNSELLDQGRVQFVVWNGKHG------ 118 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~---~~~~~~~~~~~~~~~~d~~~~------ 118 (204)
..++.+|||+|||+|.++..+++.. +..+++++|+++.+++.|++++.. ++ ...+++++++|+...
T Consensus 34 ~~~~~~VLDlG~G~G~~~l~la~~~-~~~~v~gvDi~~~~~~~a~~n~~~~~~~~----l~~~v~~~~~D~~~~~~~~~~ 108 (260)
T 2ozv_A 34 DDRACRIADLGAGAGAAGMAVAARL-EKAEVTLYERSQEMAEFARRSLELPDNAA----FSARIEVLEADVTLRAKARVE 108 (260)
T ss_dssp CCSCEEEEECCSSSSHHHHHHHHHC-TTEEEEEEESSHHHHHHHHHHTTSGGGTT----TGGGEEEEECCTTCCHHHHHH
T ss_pred ccCCCEEEEeCChHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHhhhhCC----CcceEEEEeCCHHHHhhhhhh
Confidence 4567899999999999999999987 567999999999999999999876 43 123699999998765
Q ss_pred -CCCCCCeeEEEECCCccc------------------------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 119 -YEREAPYDIIHVSPSYFT------------------------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 119 -~~~~~~~D~v~~~~~~~~------------------------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
..+.++||+|++|+++.. +++.+.++|+|||++++.++...
T Consensus 109 ~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 174 (260)
T 2ozv_A 109 AGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQS 174 (260)
T ss_dssp TTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECGGG
T ss_pred hccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHHH
Confidence 134578999999976642 35777899999999999876653
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-14 Score=111.73 Aligned_cols=107 Identities=16% Similarity=0.166 Sum_probs=86.9
Q ss_pred HHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecC
Q psy10572 36 IHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNG 115 (204)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~ 115 (204)
....+.+.+...+.++.+|||+|||+|.++..+++.. .+++|+|+++.+++.|+++. .++.++.+|+
T Consensus 36 ~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~----------~~~~~~~~d~ 102 (263)
T 3pfg_A 36 EAADLAALVRRHSPKAASLLDVACGTGMHLRHLADSF---GTVEGLELSADMLAIARRRN----------PDAVLHHGDM 102 (263)
T ss_dssp HHHHHHHHHHHHCTTCCEEEEETCTTSHHHHHHTTTS---SEEEEEESCHHHHHHHHHHC----------TTSEEEECCT
T ss_pred HHHHHHHHHHhhCCCCCcEEEeCCcCCHHHHHHHHcC---CeEEEEECCHHHHHHHHhhC----------CCCEEEECCh
Confidence 3445556665556777899999999999999998864 38999999999999998874 3688999998
Q ss_pred CCCCCCCCCeeEEEECC-Cccch---------hHHHHHhcCCCcEEEEEec
Q psy10572 116 KHGYEREAPYDIIHVSP-SYFTI---------PQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 116 ~~~~~~~~~~D~v~~~~-~~~~~---------~~~~~~~Lk~gG~l~~~~~ 156 (204)
..... .++||+|++.. .++++ ++.+.++|+|||.+++..+
T Consensus 103 ~~~~~-~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 152 (263)
T 3pfg_A 103 RDFSL-GRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEPW 152 (263)
T ss_dssp TTCCC-SCCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEECCC
T ss_pred HHCCc-cCCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 77554 57899999987 66553 5788899999999999754
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.64 E-value=3.4e-15 Score=111.10 Aligned_cols=101 Identities=19% Similarity=0.233 Sum_probs=79.3
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC---CCCCCC
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG---YEREAP 124 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~ 124 (204)
++++.+|||+|||+|..+..+++..+ .++|+|+|+|+.+++.+.+..+. ..++.++.+|.... ....++
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~-~~~V~gvD~s~~~l~~~~~~a~~-------~~~v~~~~~d~~~~~~~~~~~~~ 126 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRE-------RNNIIPLLFDASKPWKYSGIVEK 126 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHH-------CSSEEEECSCTTCGGGTTTTCCC
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHhc-------CCCeEEEEcCCCCchhhcccccc
Confidence 46788999999999999999999874 66999999999988776665543 24688888887652 122378
Q ss_pred eeEEEECCCccc----hhHHHHHhcCCCcEEEEEec
Q psy10572 125 YDIIHVSPSYFT----IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 125 ~D~v~~~~~~~~----~~~~~~~~Lk~gG~l~~~~~ 156 (204)
||+|+++...+. +++++.++|||||++++.+.
T Consensus 127 fD~V~~~~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 162 (210)
T 1nt2_A 127 VDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMVK 162 (210)
T ss_dssp EEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eeEEEEeccChhHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 999999865443 25788999999999999863
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.7e-15 Score=108.49 Aligned_cols=136 Identities=17% Similarity=0.135 Sum_probs=99.0
Q ss_pred cccccccccCCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhh
Q psy10572 18 YRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97 (204)
Q Consensus 18 y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~ 97 (204)
|+...+..+.+...+...+...+.+.+...++++.+|||+|||+|.++..+++.. + .++|+|+++.+++.+++++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~-~--~v~~vD~~~~~~~~a~~~~~~ 85 (171)
T 1ws6_A 9 ARGVALKVPASARPSPVRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEG-W--EAVLVEKDPEAVRLLKENVRR 85 (171)
T ss_dssp GTTCEECCCTTCCCCCHHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTT-C--EEEEECCCHHHHHHHHHHHHH
T ss_pred cCCeEecCCCCCCCCHHHHHHHHHHHHHhhccCCCeEEEeCCCcCHHHHHHHHCC-C--eEEEEeCCHHHHHHHHHHHHH
Confidence 3333333333333345566666777666434478899999999999999999875 3 599999999999999999876
Q ss_pred cCccccCccceEEEEecCCCCCC----CCCCeeEEEECCCcc----chhHHHH--HhcCCCcEEEEEecCCCCcc
Q psy10572 98 GNSELLDQGRVQFVVWNGKHGYE----REAPYDIIHVSPSYF----TIPQKLL--DQLVPGGRMVMPVGEPFKGQ 162 (204)
Q Consensus 98 ~~~~~~~~~~~~~~~~d~~~~~~----~~~~~D~v~~~~~~~----~~~~~~~--~~Lk~gG~l~~~~~~~~~~~ 162 (204)
.+ . +++++.+|+..... ..++||+|+++.++. ...+.+. ++|+|||.+++++.......
T Consensus 86 ~~-----~-~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~~~~~~~ 154 (171)
T 1ws6_A 86 TG-----L-GARVVALPVEVFLPEAKAQGERFTVAFMAPPYAMDLAALFGELLASGLVEAGGLYVLQHPKDLYLP 154 (171)
T ss_dssp HT-----C-CCEEECSCHHHHHHHHHHTTCCEEEEEECCCTTSCTTHHHHHHHHHTCEEEEEEEEEEEETTSCCT
T ss_pred cC-----C-ceEEEeccHHHHHHhhhccCCceEEEEECCCCchhHHHHHHHHHhhcccCCCcEEEEEeCCccCCc
Confidence 43 2 78899998764211 124799999997652 3556666 89999999999998776443
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=9.6e-16 Score=119.61 Aligned_cols=109 Identities=25% Similarity=0.267 Sum_probs=84.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccc-------------------------
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSEL------------------------- 102 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~------------------------- 102 (204)
..++.+|||||||+|.++..+++.+ +..+++|+|+++.+++.|++++.......
T Consensus 44 ~~~~~~VLDiGCG~G~~~~~la~~~-~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (292)
T 3g07_A 44 WFRGRDVLDLGCNVGHLTLSIACKW-GPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRK 122 (292)
T ss_dssp GTTTSEEEEESCTTCHHHHHHHHHT-CCSEEEEEESCHHHHHHHHHTC--------------------------------
T ss_pred hcCCCcEEEeCCCCCHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccc
Confidence 3467899999999999999999987 55699999999999999999875432100
Q ss_pred ----------------------------cCccceEEEEecCCCCC-----CCCCCeeEEEECCCccc------------h
Q psy10572 103 ----------------------------LDQGRVQFVVWNGKHGY-----EREAPYDIIHVSPSYFT------------I 137 (204)
Q Consensus 103 ----------------------------~~~~~~~~~~~d~~~~~-----~~~~~~D~v~~~~~~~~------------~ 137 (204)
....+++++++|+.... ...++||+|++...+.+ +
T Consensus 123 ~~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~ 202 (292)
T 3g07_A 123 RSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRM 202 (292)
T ss_dssp -------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred cccccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHH
Confidence 00147999999987543 34578999999988733 4
Q ss_pred hHHHHHhcCCCcEEEEEecC
Q psy10572 138 PQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 138 ~~~~~~~Lk~gG~l~~~~~~ 157 (204)
++++.++|+|||+|++....
T Consensus 203 l~~~~~~LkpGG~lil~~~~ 222 (292)
T 3g07_A 203 FRRIYRHLRPGGILVLEPQP 222 (292)
T ss_dssp HHHHHHHEEEEEEEEEECCC
T ss_pred HHHHHHHhCCCcEEEEecCC
Confidence 57888999999999996544
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.63 E-value=2.2e-15 Score=108.88 Aligned_cols=122 Identities=16% Similarity=0.181 Sum_probs=90.1
Q ss_pred ChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEE
Q psy10572 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVV 112 (204)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 112 (204)
...+...+.+.+.. ..++.+|||+|||+|.++..+++. +..+++|+|+++.+++.|++++...+ ..++++++.
T Consensus 15 ~~~~~~~~~~~l~~-~~~~~~vLDlGcG~G~~~~~l~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~----~~~~~~~~~ 87 (177)
T 2esr_A 15 SDKVRGAIFNMIGP-YFNGGRVLDLFAGSGGLAIEAVSR--GMSAAVLVEKNRKAQAIIQDNIIMTK----AENRFTLLK 87 (177)
T ss_dssp ---CHHHHHHHHCS-CCCSCEEEEETCTTCHHHHHHHHT--TCCEEEEECCCHHHHHHHHHHHHTTT----CGGGEEEEC
T ss_pred HHHHHHHHHHHHHh-hcCCCeEEEeCCCCCHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHHcC----CCCceEEEE
Confidence 33445555555542 356789999999999999999886 33599999999999999999987643 124799999
Q ss_pred ecCCCCC-CCCCCeeEEEECCCcc-----chhHHHH--HhcCCCcEEEEEecCCCCc
Q psy10572 113 WNGKHGY-EREAPYDIIHVSPSYF-----TIPQKLL--DQLVPGGRMVMPVGEPFKG 161 (204)
Q Consensus 113 ~d~~~~~-~~~~~~D~v~~~~~~~-----~~~~~~~--~~Lk~gG~l~~~~~~~~~~ 161 (204)
+|+.+.. ...++||+|+++.++. ..++.+. ++|+|||++++.+......
T Consensus 88 ~d~~~~~~~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~~~ 144 (177)
T 2esr_A 88 MEAERAIDCLTGRFDLVFLDPPYAKETIVATIEALAAKNLLSEQVMVVCETDKTVLL 144 (177)
T ss_dssp SCHHHHHHHBCSCEEEEEECCSSHHHHHHHHHHHHHHTTCEEEEEEEEEEEETTCCC
T ss_pred CcHHHhHHhhcCCCCEEEECCCCCcchHHHHHHHHHhCCCcCCCcEEEEEECCcccc
Confidence 9976521 1235699999998863 2345555 8899999999998876543
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.6e-15 Score=115.70 Aligned_cols=104 Identities=19% Similarity=0.228 Sum_probs=86.3
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC-CCCCCee
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-EREAPYD 126 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D 126 (204)
..++.+|||+|||+|.++..+++.. .+++|+|+++.+++.|++++...+ ..++++++.+|+.... ...++||
T Consensus 66 ~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~~~~~~~~fD 138 (285)
T 4htf_A 66 GPQKLRVLDAGGGEGQTAIKMAERG---HQVILCDLSAQMIDRAKQAAEAKG----VSDNMQFIHCAAQDVASHLETPVD 138 (285)
T ss_dssp CSSCCEEEEETCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHC-C----CGGGEEEEESCGGGTGGGCSSCEE
T ss_pred CCCCCEEEEeCCcchHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcC----CCcceEEEEcCHHHhhhhcCCCce
Confidence 3456799999999999999999863 499999999999999999987643 1258999999987654 4568899
Q ss_pred EEEECCCccc------hhHHHHHhcCCCcEEEEEecCC
Q psy10572 127 IIHVSPSYFT------IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 127 ~v~~~~~~~~------~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
+|++...+++ +++.+.++|+|||.+++..++.
T Consensus 139 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 176 (285)
T 4htf_A 139 LILFHAVLEWVADPRSVLQTLWSVLRPGGVLSLMFYNA 176 (285)
T ss_dssp EEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEEBH
T ss_pred EEEECchhhcccCHHHHHHHHHHHcCCCeEEEEEEeCC
Confidence 9999988765 5588999999999999987643
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=4.2e-15 Score=108.22 Aligned_cols=119 Identities=21% Similarity=0.239 Sum_probs=95.0
Q ss_pred cCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEE
Q psy10572 31 ISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQF 110 (204)
Q Consensus 31 ~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 110 (204)
.+...+...++..+. +.++.+|||+|||+|.++..+++.. .+++++|+++.+++.+++++...+ ...++.+
T Consensus 16 ~~~~~~~~~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~----~~~~~~~ 86 (192)
T 1l3i_A 16 PTAMEVRCLIMCLAE--PGKNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHG----LGDNVTL 86 (192)
T ss_dssp CCCHHHHHHHHHHHC--CCTTCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTT----CCTTEEE
T ss_pred CChHHHHHHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHHcC----CCcceEE
Confidence 556667777777775 6788999999999999999998875 499999999999999999987643 1257899
Q ss_pred EEecCCCCCCCCCCeeEEEECCCccc---hhHHHHHhcCCCcEEEEEecCC
Q psy10572 111 VVWNGKHGYEREAPYDIIHVSPSYFT---IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 111 ~~~d~~~~~~~~~~~D~v~~~~~~~~---~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
..+|+.......++||+|+++...++ +++.+.++|+|||.+++..+..
T Consensus 87 ~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~l~~gG~l~~~~~~~ 137 (192)
T 1l3i_A 87 MEGDAPEALCKIPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAILL 137 (192)
T ss_dssp EESCHHHHHTTSCCEEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEECBH
T ss_pred EecCHHHhcccCCCCCEEEECCchHHHHHHHHHHHHhcCCCcEEEEEecCc
Confidence 99987652222257999999987654 5688889999999999977643
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.3e-15 Score=119.48 Aligned_cols=112 Identities=18% Similarity=0.267 Sum_probs=90.5
Q ss_pred HHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCC
Q psy10572 42 ELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYER 121 (204)
Q Consensus 42 ~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 121 (204)
..+...+.++.+|||+|||+|..+..++....+.++++|+|+++.+++.+++++...+ ...+++++.+|+.....+
T Consensus 110 ~~l~~~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~~~~ 185 (305)
T 3ocj_A 110 RALQRHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHA----LAGQITLHRQDAWKLDTR 185 (305)
T ss_dssp HHHHHHCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTST----TGGGEEEEECCGGGCCCC
T ss_pred HHHHhhCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcC----CCCceEEEECchhcCCcc
Confidence 3334446888999999999999999886333367799999999999999999987643 124699999998876665
Q ss_pred CCCeeEEEECCCccc---------hhHHHHHhcCCCcEEEEEecCC
Q psy10572 122 EAPYDIIHVSPSYFT---------IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 122 ~~~~D~v~~~~~~~~---------~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
++||+|+++.++++ +++++.++|+|||++++.....
T Consensus 186 -~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 230 (305)
T 3ocj_A 186 -EGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTP 230 (305)
T ss_dssp -SCEEEEECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCC
T ss_pred -CCeEEEEECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCC
Confidence 88999999887765 3578889999999999987554
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=8.1e-15 Score=115.29 Aligned_cols=105 Identities=20% Similarity=0.100 Sum_probs=88.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
+.++.+|||+|||+|.++..+++..+ ++++|+|+++.+++.|++++...+ ...+++++.+|+.....+.++||+
T Consensus 115 ~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~~~~~~~fD~ 188 (312)
T 3vc1_A 115 AGPDDTLVDAGCGRGGSMVMAHRRFG--SRVEGVTLSAAQADFGNRRARELR----IDDHVRSRVCNMLDTPFDKGAVTA 188 (312)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHHTT----CTTTEEEEECCTTSCCCCTTCEEE
T ss_pred CCCCCEEEEecCCCCHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHcC----CCCceEEEECChhcCCCCCCCEeE
Confidence 35778999999999999999999852 599999999999999999987743 124799999998876666789999
Q ss_pred EEECCCccc-----hhHHHHHhcCCCcEEEEEecCC
Q psy10572 128 IHVSPSYFT-----IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 128 v~~~~~~~~-----~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
|+++..+++ +++++.++|||||++++..+..
T Consensus 189 V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 224 (312)
T 3vc1_A 189 SWNNESTMYVDLHDLFSEHSRFLKVGGRYVTITGCW 224 (312)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred EEECCchhhCCHHHHHHHHHHHcCCCcEEEEEEccc
Confidence 999877654 5688999999999999977543
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.6e-15 Score=111.31 Aligned_cols=106 Identities=21% Similarity=0.201 Sum_probs=87.9
Q ss_pred HHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCC
Q psy10572 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKH 117 (204)
Q Consensus 38 ~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 117 (204)
..+++.+. ..++.+|||+|||+|.++..+++.. .+++|+|+++.+++.++++.. .+++++.+|+..
T Consensus 35 ~~~l~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~---------~~~~~~~~d~~~ 100 (220)
T 3hnr_A 35 EDILEDVV--NKSFGNVLEFGVGTGNLTNKLLLAG---RTVYGIEPSREMRMIAKEKLP---------KEFSITEGDFLS 100 (220)
T ss_dssp HHHHHHHH--HTCCSEEEEECCTTSHHHHHHHHTT---CEEEEECSCHHHHHHHHHHSC---------TTCCEESCCSSS
T ss_pred HHHHHHhh--ccCCCeEEEeCCCCCHHHHHHHhCC---CeEEEEeCCHHHHHHHHHhCC---------CceEEEeCChhh
Confidence 45555555 4688899999999999999998863 499999999999999988753 368899999887
Q ss_pred CCCCCCCeeEEEECCCccc--------hhHHHHHhcCCCcEEEEEecCC
Q psy10572 118 GYEREAPYDIIHVSPSYFT--------IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 118 ~~~~~~~~D~v~~~~~~~~--------~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
...+ ++||+|+++..+++ +++++.++|||||.+++..+..
T Consensus 101 ~~~~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 148 (220)
T 3hnr_A 101 FEVP-TSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIF 148 (220)
T ss_dssp CCCC-SCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECB
T ss_pred cCCC-CCeEEEEECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEeccc
Confidence 6665 88999999988765 5578889999999999987543
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.63 E-value=6e-15 Score=109.16 Aligned_cols=116 Identities=12% Similarity=0.102 Sum_probs=88.9
Q ss_pred HHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEec
Q psy10572 35 HIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWN 114 (204)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d 114 (204)
.....+++.+. ...++.+|||+|||+|..+..++.. ...+++|+|+|+.+++.+++++.... .++.++.+|
T Consensus 9 ~~~~~~~~~~~-~~~~~~~vLDiGcG~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~------~~~~~~~~d 79 (209)
T 2p8j_A 9 PQLYRFLKYCN-ESNLDKTVLDCGAGGDLPPLSIFVE--DGYKTYGIEISDLQLKKAENFSRENN------FKLNISKGD 79 (209)
T ss_dssp THHHHHHHHHH-HSSSCSEEEEESCCSSSCTHHHHHH--TTCEEEEEECCHHHHHHHHHHHHHHT------CCCCEEECC
T ss_pred hhHHHHHHHHh-ccCCCCEEEEECCCCCHHHHHHHHh--CCCEEEEEECCHHHHHHHHHHHHhcC------CceEEEECc
Confidence 34444555544 3577889999999999985544443 33599999999999999999876532 468899999
Q ss_pred CCCCCCCCCCeeEEEECCCccch--------hHHHHHhcCCCcEEEEEecCCC
Q psy10572 115 GKHGYEREAPYDIIHVSPSYFTI--------PQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 115 ~~~~~~~~~~~D~v~~~~~~~~~--------~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
+.....+.++||+|++...++++ ++++.++|+|||.+++...+..
T Consensus 80 ~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 132 (209)
T 2p8j_A 80 IRKLPFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLTTK 132 (209)
T ss_dssp TTSCCSCTTCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEETT
T ss_pred hhhCCCCCCceeEEEEcChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccc
Confidence 87766666789999998776554 4688899999999999886543
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.63 E-value=5.5e-15 Score=115.54 Aligned_cols=105 Identities=13% Similarity=0.086 Sum_probs=86.9
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCC-----
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYERE----- 122 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~----- 122 (204)
..++.+|||+|||+|..+..+++.+.+..+++|+|+|+.+++.|++++.... ....+++++.+|+.....+.
T Consensus 34 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~---~~~~~v~~~~~d~~~~~~~~~~~~~ 110 (299)
T 3g5t_A 34 DGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSP---DTYKNVSFKISSSDDFKFLGADSVD 110 (299)
T ss_dssp CSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC----CCTTEEEEECCTTCCGGGCTTTTT
T ss_pred cCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhcc---CCCCceEEEEcCHHhCCcccccccc
Confidence 3678899999999999999999865356799999999999999999987630 01368999999988655544
Q ss_pred -CCeeEEEECCCccc-----hhHHHHHhcCCCcEEEEEe
Q psy10572 123 -APYDIIHVSPSYFT-----IPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 123 -~~~D~v~~~~~~~~-----~~~~~~~~Lk~gG~l~~~~ 155 (204)
++||+|+++..+++ +++++.++|+|||.+++..
T Consensus 111 ~~~fD~V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~i~~ 149 (299)
T 3g5t_A 111 KQKIDMITAVECAHWFDFEKFQRSAYANLRKDGTIAIWG 149 (299)
T ss_dssp SSCEEEEEEESCGGGSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCeeEEeHhhHHHHhCHHHHHHHHHHhcCCCcEEEEEe
Confidence 78999999988765 5678999999999998833
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.4e-15 Score=114.86 Aligned_cols=99 Identities=16% Similarity=0.206 Sum_probs=84.7
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
..++.+|||+|||+|.++..+++.. +.++++++|+++.+++.++++. +++.++.+|+.... +.++||+
T Consensus 31 ~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~~D~s~~~~~~a~~~~----------~~~~~~~~d~~~~~-~~~~fD~ 98 (259)
T 2p35_A 31 LERVLNGYDLGCGPGNSTELLTDRY-GVNVITGIDSDDDMLEKAADRL----------PNTNFGKADLATWK-PAQKADL 98 (259)
T ss_dssp CSCCSSEEEETCTTTHHHHHHHHHH-CTTSEEEEESCHHHHHHHHHHS----------TTSEEEECCTTTCC-CSSCEEE
T ss_pred CCCCCEEEEecCcCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhC----------CCcEEEECChhhcC-ccCCcCE
Confidence 4677899999999999999999987 5679999999999999998762 46889999987655 5678999
Q ss_pred EEECCCccc------hhHHHHHhcCCCcEEEEEecCC
Q psy10572 128 IHVSPSYFT------IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 128 v~~~~~~~~------~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
|+++..+++ +++++.++|+|||.+++.++..
T Consensus 99 v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 135 (259)
T 2p35_A 99 LYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMPDN 135 (259)
T ss_dssp EEEESCGGGSTTHHHHHHHHGGGEEEEEEEEEEEECC
T ss_pred EEEeCchhhCCCHHHHHHHHHHhcCCCeEEEEEeCCC
Confidence 999988766 3578889999999999988654
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.63 E-value=5e-15 Score=113.30 Aligned_cols=113 Identities=16% Similarity=0.180 Sum_probs=91.5
Q ss_pred hHHHHHHHHHH---hccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEE
Q psy10572 34 PHIHAQMLELL---KDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQF 110 (204)
Q Consensus 34 ~~~~~~~~~~l---~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 110 (204)
......+.+.+ ...+.++.+|||+|||+|.++..+++.. .+++|+|+|+.+++.+++++.. ..+++.+
T Consensus 20 ~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~------~~~~~~~ 90 (263)
T 2yqz_A 20 PEVAGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIARG---YRYIALDADAAMLEVFRQKIAG------VDRKVQV 90 (263)
T ss_dssp HHHHHHHHHHHHHHCCCSSSCCEEEEETCTTSTTHHHHHTTT---CEEEEEESCHHHHHHHHHHTTT------SCTTEEE
T ss_pred hHHHHHHHHHHHHhhcCCCCCCEEEEeCCcCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHhhc------cCCceEE
Confidence 44555666666 3346788899999999999999998863 4999999999999999998722 2468999
Q ss_pred EEecCCCCCCCCCCeeEEEECCCccc------hhHHHHHhcCCCcEEEEEe
Q psy10572 111 VVWNGKHGYEREAPYDIIHVSPSYFT------IPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 111 ~~~d~~~~~~~~~~~D~v~~~~~~~~------~~~~~~~~Lk~gG~l~~~~ 155 (204)
+.+|+.....+.++||+|+++..+++ +++++.++|+|||.+++..
T Consensus 91 ~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~ 141 (263)
T 2yqz_A 91 VQADARAIPLPDESVHGVIVVHLWHLVPDWPKVLAEAIRVLKPGGALLEGW 141 (263)
T ss_dssp EESCTTSCCSCTTCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEcccccCCCCCCCeeEEEECCchhhcCCHHHHHHHHHHHCCCCcEEEEEe
Confidence 99998776666688999999888765 4578889999999999873
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.3e-15 Score=113.12 Aligned_cols=92 Identities=23% Similarity=0.320 Sum_probs=80.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCC-CCCC-CCCe
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKH-GYER-EAPY 125 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~-~~~~ 125 (204)
+.++.+|||+|||+|.++..+++.. .+++++|+++.+++.++++. ++++++.+|+.. ...+ .++|
T Consensus 46 ~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~----------~~~~~~~~d~~~~~~~~~~~~f 112 (226)
T 3m33_A 46 LTPQTRVLEAGCGHGPDAARFGPQA---ARWAAYDFSPELLKLARANA----------PHADVYEWNGKGELPAGLGAPF 112 (226)
T ss_dssp CCTTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHC----------TTSEEEECCSCSSCCTTCCCCE
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHhC----------CCceEEEcchhhccCCcCCCCE
Confidence 5788999999999999999998873 49999999999999998871 478999999853 3344 5789
Q ss_pred eEEEECCCccchhHHHHHhcCCCcEEE
Q psy10572 126 DIIHVSPSYFTIPQKLLDQLVPGGRMV 152 (204)
Q Consensus 126 D~v~~~~~~~~~~~~~~~~Lk~gG~l~ 152 (204)
|+|+++.....+++++.++|||||.++
T Consensus 113 D~v~~~~~~~~~l~~~~~~LkpgG~l~ 139 (226)
T 3m33_A 113 GLIVSRRGPTSVILRLPELAAPDAHFL 139 (226)
T ss_dssp EEEEEESCCSGGGGGHHHHEEEEEEEE
T ss_pred EEEEeCCCHHHHHHHHHHHcCCCcEEE
Confidence 999999888889999999999999999
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.63 E-value=6.2e-15 Score=112.40 Aligned_cols=100 Identities=17% Similarity=0.226 Sum_probs=84.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEE
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDII 128 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 128 (204)
.++.+|||+|||+|.++..+++.. . .+++|+|+++.+++.++++.. ..++.++.+|+.....+.++||+|
T Consensus 43 ~~~~~vLD~GcG~G~~~~~l~~~~-~-~~v~~vD~s~~~~~~a~~~~~--------~~~~~~~~~d~~~~~~~~~~fD~v 112 (253)
T 3g5l_A 43 FNQKTVLDLGCGFGWHCIYAAEHG-A-KKVLGIDLSERMLTEAKRKTT--------SPVVCYEQKAIEDIAIEPDAYNVV 112 (253)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTT-C-SEEEEEESCHHHHHHHHHHCC--------CTTEEEEECCGGGCCCCTTCEEEE
T ss_pred cCCCEEEEECCCCCHHHHHHHHcC-C-CEEEEEECCHHHHHHHHHhhc--------cCCeEEEEcchhhCCCCCCCeEEE
Confidence 377899999999999999998875 3 289999999999999998864 257999999987766666899999
Q ss_pred EECCCccc------hhHHHHHhcCCCcEEEEEecCC
Q psy10572 129 HVSPSYFT------IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 129 ~~~~~~~~------~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
++...+++ +++++.++|+|||.+++.+++.
T Consensus 113 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 148 (253)
T 3g5l_A 113 LSSLALHYIASFDDICKKVYINLKSSGSFIFSVEHP 148 (253)
T ss_dssp EEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred EEchhhhhhhhHHHHHHHHHHHcCCCcEEEEEeCCC
Confidence 99987765 4578999999999999986543
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.63 E-value=5.2e-15 Score=111.24 Aligned_cols=108 Identities=20% Similarity=0.234 Sum_probs=88.0
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
++++.+|||+|||+|.++..+++.. .+++++|+++.+++.++++............++.++.+|......+.++||+
T Consensus 28 ~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 104 (235)
T 3sm3_A 28 LQEDDEILDIGCGSGKISLELASKG---YSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDF 104 (235)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHhCC---CeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeE
Confidence 5788999999999999999999873 4999999999999999998876432111234689999998876666789999
Q ss_pred EEECCCccc---------hhHHHHHhcCCCcEEEEEecCC
Q psy10572 128 IHVSPSYFT---------IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 128 v~~~~~~~~---------~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
|+++..+.+ +++.+.++|+|||.+++..+..
T Consensus 105 v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 144 (235)
T 3sm3_A 105 AVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQ 144 (235)
T ss_dssp EEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred EEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCc
Confidence 999877654 4578889999999999987644
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.62 E-value=4.3e-15 Score=114.91 Aligned_cols=105 Identities=20% Similarity=0.311 Sum_probs=89.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhc-CccccCccceEEEEecCCCCCCCCCCee
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKG-NSELLDQGRVQFVVWNGKHGYEREAPYD 126 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~D 126 (204)
+.++.+|||+|||+|.++..+++...+..+++++|+++.+++.+++++... + .++++++.+|+.. ..+.++||
T Consensus 108 ~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g-----~~~v~~~~~d~~~-~~~~~~fD 181 (275)
T 1yb2_A 108 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYD-----IGNVRTSRSDIAD-FISDQMYD 181 (275)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSC-----CTTEEEECSCTTT-CCCSCCEE
T ss_pred CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCC-----CCcEEEEECchhc-cCcCCCcc
Confidence 577889999999999999999998545679999999999999999998764 2 3579999999877 34457899
Q ss_pred EEEECCCcc-chhHHHHHhcCCCcEEEEEecCC
Q psy10572 127 IIHVSPSYF-TIPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 127 ~v~~~~~~~-~~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
+|+++.+.. .+++.+.++|+|||++++.++..
T Consensus 182 ~Vi~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 214 (275)
T 1yb2_A 182 AVIADIPDPWNHVQKIASMMKPGSVATFYLPNF 214 (275)
T ss_dssp EEEECCSCGGGSHHHHHHTEEEEEEEEEEESSH
T ss_pred EEEEcCcCHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence 999976554 47799999999999999988765
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.62 E-value=2.8e-15 Score=113.55 Aligned_cols=110 Identities=17% Similarity=0.205 Sum_probs=89.2
Q ss_pred HHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecC
Q psy10572 36 IHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNG 115 (204)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~ 115 (204)
....+.+.+.+. .++.+|||+|||+|.++..+++.. + +++|+|+++.+++.|+++... +++++.+|+
T Consensus 29 ~~~~~~~~l~~~-~~~~~vLDiGcG~G~~~~~l~~~~-~--~v~gvD~s~~~~~~a~~~~~~---------~v~~~~~d~ 95 (250)
T 2p7i_A 29 MHPFMVRAFTPF-FRPGNLLELGSFKGDFTSRLQEHF-N--DITCVEASEEAISHAQGRLKD---------GITYIHSRF 95 (250)
T ss_dssp HHHHHHHHHGGG-CCSSCEEEESCTTSHHHHHHTTTC-S--CEEEEESCHHHHHHHHHHSCS---------CEEEEESCG
T ss_pred HHHHHHHHHHhh-cCCCcEEEECCCCCHHHHHHHHhC-C--cEEEEeCCHHHHHHHHHhhhC---------CeEEEEccH
Confidence 445556666533 467799999999999999998865 3 899999999999999987531 789999997
Q ss_pred CCCCCCCCCeeEEEECCCccc------hhHHHH-HhcCCCcEEEEEecCCC
Q psy10572 116 KHGYEREAPYDIIHVSPSYFT------IPQKLL-DQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 116 ~~~~~~~~~~D~v~~~~~~~~------~~~~~~-~~Lk~gG~l~~~~~~~~ 159 (204)
... .+.++||+|++...+++ +++++. ++|||||++++.+++..
T Consensus 96 ~~~-~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~~LkpgG~l~i~~~~~~ 145 (250)
T 2p7i_A 96 EDA-QLPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNAN 145 (250)
T ss_dssp GGC-CCSSCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEECTT
T ss_pred HHc-CcCCcccEEEEhhHHHhhcCHHHHHHHHHHHhcCCCCEEEEEcCChH
Confidence 765 45678999999988765 458899 99999999999987654
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=5e-15 Score=119.39 Aligned_cols=102 Identities=27% Similarity=0.379 Sum_probs=86.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEE
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDII 128 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 128 (204)
.++.+|||+|||+|.++..+++.. .+|+++|+++.+++.+++++..++ .+++++.+|+.....+.++||+|
T Consensus 232 ~~~~~VLDlGcG~G~~~~~la~~g---~~V~gvDis~~al~~A~~n~~~~~------~~v~~~~~D~~~~~~~~~~fD~I 302 (381)
T 3dmg_A 232 VRGRQVLDLGAGYGALTLPLARMG---AEVVGVEDDLASVLSLQKGLEANA------LKAQALHSDVDEALTEEARFDII 302 (381)
T ss_dssp TTTCEEEEETCTTSTTHHHHHHTT---CEEEEEESBHHHHHHHHHHHHHTT------CCCEEEECSTTTTSCTTCCEEEE
T ss_pred CCCCEEEEEeeeCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHcC------CCeEEEEcchhhccccCCCeEEE
Confidence 367899999999999999999863 499999999999999999988744 24899999988766555789999
Q ss_pred EECCCccc-----------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 129 HVSPSYFT-----------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 129 ~~~~~~~~-----------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
+++.++++ +++.+.++|+|||++++++....
T Consensus 303 i~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~l 344 (381)
T 3dmg_A 303 VTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNPFL 344 (381)
T ss_dssp EECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECTTS
T ss_pred EECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEcCCC
Confidence 99988765 45788899999999999876553
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.62 E-value=1e-14 Score=112.88 Aligned_cols=116 Identities=28% Similarity=0.335 Sum_probs=95.0
Q ss_pred HHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecC
Q psy10572 36 IHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNG 115 (204)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~ 115 (204)
....++..+. +.++.+|||+|||+|.++..+++..++.++++++|+++.+++.|++++...+ ..++++++.+|+
T Consensus 100 ~~~~i~~~~~--~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~----~~~~v~~~~~d~ 173 (277)
T 1o54_A 100 DSSFIAMMLD--VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWG----LIERVTIKVRDI 173 (277)
T ss_dssp HHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTT----CGGGEEEECCCG
T ss_pred HHHHHHHHhC--CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcC----CCCCEEEEECCH
Confidence 3345555554 6788899999999999999999985466799999999999999999987643 125799999998
Q ss_pred CCCCCCCCCeeEEEECCCcc-chhHHHHHhcCCCcEEEEEecCC
Q psy10572 116 KHGYEREAPYDIIHVSPSYF-TIPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 116 ~~~~~~~~~~D~v~~~~~~~-~~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
... .+.++||+|+++.+.. .+++.+.++|+|||.+++.++..
T Consensus 174 ~~~-~~~~~~D~V~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 216 (277)
T 1o54_A 174 SEG-FDEKDVDALFLDVPDPWNYIDKCWEALKGGGRFATVCPTT 216 (277)
T ss_dssp GGC-CSCCSEEEEEECCSCGGGTHHHHHHHEEEEEEEEEEESSH
T ss_pred HHc-ccCCccCEEEECCcCHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence 765 4446899999988766 57899999999999999988754
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=5.2e-15 Score=114.67 Aligned_cols=103 Identities=17% Similarity=0.102 Sum_probs=87.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
++++.+|||+|||+|.++..+++... . +|+|+|+|+.+++.|++++..++. ..+++++.+|+..... .++||+
T Consensus 123 ~~~~~~VLDlgcG~G~~~~~la~~~~-~-~V~~vD~s~~~~~~a~~n~~~n~~----~~~v~~~~~D~~~~~~-~~~fD~ 195 (278)
T 2frn_A 123 AKPDELVVDMFAGIGHLSLPIAVYGK-A-KVIAIEKDPYTFKFLVENIHLNKV----EDRMSAYNMDNRDFPG-ENIADR 195 (278)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTC-C-EEEEECCCHHHHHHHHHHHHHTTC----TTTEEEECSCTTTCCC-CSCEEE
T ss_pred CCCCCEEEEecccCCHHHHHHHHhCC-C-EEEEEECCHHHHHHHHHHHHHcCC----CceEEEEECCHHHhcc-cCCccE
Confidence 57789999999999999999999863 3 799999999999999999987541 2359999999887655 578999
Q ss_pred EEECCCcc--chhHHHHHhcCCCcEEEEEecC
Q psy10572 128 IHVSPSYF--TIPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 128 v~~~~~~~--~~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
|+++.+.. .+++.+.++|+|||++++..+.
T Consensus 196 Vi~~~p~~~~~~l~~~~~~LkpgG~l~~~~~~ 227 (278)
T 2frn_A 196 ILMGYVVRTHEFIPKALSIAKDGAIIHYHNTV 227 (278)
T ss_dssp EEECCCSSGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred EEECCchhHHHHHHHHHHHCCCCeEEEEEEee
Confidence 99998764 4778999999999999997765
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.9e-16 Score=117.51 Aligned_cols=103 Identities=23% Similarity=0.410 Sum_probs=66.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCC-----C
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYERE-----A 123 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-----~ 123 (204)
.++.+|||+|||+|.++..+++.. +.++++|+|+++.+++.+++++...+ . +++++.+|+.. ..+. +
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~-----~-~~~~~~~d~~~-~~~~~~~~~~ 100 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIALAC-PGVSVTAVDLSMDALAVARRNAERFG-----A-VVDWAAADGIE-WLIERAERGR 100 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHHHHC-TTEEEEEEECC-------------------------CCHHHHHH-HHHHHHHTTC
T ss_pred CCCCEEEEecCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHhC-----C-ceEEEEcchHh-hhhhhhhccC
Confidence 678899999999999999999987 66799999999999999999887633 2 67888888765 2232 7
Q ss_pred CeeEEEECCCccc--------------------------------hhHHHHHhcCCCcE-EEEEecCCC
Q psy10572 124 PYDIIHVSPSYFT--------------------------------IPQKLLDQLVPGGR-MVMPVGEPF 159 (204)
Q Consensus 124 ~~D~v~~~~~~~~--------------------------------~~~~~~~~Lk~gG~-l~~~~~~~~ 159 (204)
+||+|++++++.. +++.+.++|+|||+ +++.+....
T Consensus 101 ~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 169 (215)
T 4dzr_A 101 PWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGHNQ 169 (215)
T ss_dssp CBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTTSC
T ss_pred cccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECCcc
Confidence 8999999877632 23456689999999 666555433
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=2.5e-15 Score=112.34 Aligned_cols=110 Identities=22% Similarity=0.291 Sum_probs=87.7
Q ss_pred HHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCC
Q psy10572 43 LLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYERE 122 (204)
Q Consensus 43 ~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 122 (204)
.+...++++.+|+|+|||+|.+++.+++.. +..+|+++|+++.+++.|+++++.++. ..++++..+|+.....+.
T Consensus 8 ~l~~~v~~g~~VlDIGtGsG~l~i~la~~~-~~~~V~avDi~~~al~~A~~N~~~~gl----~~~i~~~~~d~l~~l~~~ 82 (225)
T 3kr9_A 8 LVASFVSQGAILLDVGSDHAYLPIELVERG-QIKSAIAGEVVEGPYQSAVKNVEAHGL----KEKIQVRLANGLAAFEET 82 (225)
T ss_dssp HHHTTSCTTEEEEEETCSTTHHHHHHHHTT-SEEEEEEEESSHHHHHHHHHHHHHTTC----TTTEEEEECSGGGGCCGG
T ss_pred HHHHhCCCCCEEEEeCCCcHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCC----CceEEEEECchhhhcccC
Confidence 344456788999999999999999999976 667999999999999999999988651 247999999987665433
Q ss_pred CCeeEEEECCC----ccchhHHHHHhcCCCcEEEEEecC
Q psy10572 123 APYDIIHVSPS----YFTIPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 123 ~~~D~v~~~~~----~~~~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
.+||+|++... ...+++.....|+++|+++++-..
T Consensus 83 ~~~D~IviaG~Gg~~i~~Il~~~~~~L~~~~~lVlq~~~ 121 (225)
T 3kr9_A 83 DQVSVITIAGMGGRLIARILEEGLGKLANVERLILQPNN 121 (225)
T ss_dssp GCCCEEEEEEECHHHHHHHHHHTGGGCTTCCEEEEEESS
T ss_pred cCCCEEEEcCCChHHHHHHHHHHHHHhCCCCEEEEECCC
Confidence 36998876443 244667788899999999986553
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.9e-15 Score=114.91 Aligned_cols=106 Identities=19% Similarity=0.301 Sum_probs=86.5
Q ss_pred CC-CCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC--CCCCC
Q psy10572 48 IK-PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY--EREAP 124 (204)
Q Consensus 48 ~~-~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~ 124 (204)
+. ++.+|||+|||+|.++..+++.. + .+++|+|+++.+++.|++++..++ ...+++++++|+.... .+.++
T Consensus 46 ~~~~~~~vLDlG~G~G~~~~~la~~~-~-~~v~gvDi~~~~~~~a~~n~~~~~----~~~~v~~~~~D~~~~~~~~~~~~ 119 (259)
T 3lpm_A 46 LPIRKGKIIDLCSGNGIIPLLLSTRT-K-AKIVGVEIQERLADMAKRSVAYNQ----LEDQIEIIEYDLKKITDLIPKER 119 (259)
T ss_dssp CCSSCCEEEETTCTTTHHHHHHHTTC-C-CEEEEECCSHHHHHHHHHHHHHTT----CTTTEEEECSCGGGGGGTSCTTC
T ss_pred CCCCCCEEEEcCCchhHHHHHHHHhc-C-CcEEEEECCHHHHHHHHHHHHHCC----CcccEEEEECcHHHhhhhhccCC
Confidence 45 78899999999999999999875 3 399999999999999999998754 1246999999987543 33578
Q ss_pred eeEEEECCCccc--------------------------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 125 YDIIHVSPSYFT--------------------------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 125 ~D~v~~~~~~~~--------------------------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
||+|++|+++.. +++.+.++|+|||++++..+...
T Consensus 120 fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 180 (259)
T 3lpm_A 120 ADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPER 180 (259)
T ss_dssp EEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECTTT
T ss_pred ccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHHH
Confidence 999999987632 45788899999999999776554
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.62 E-value=9e-15 Score=111.49 Aligned_cols=105 Identities=19% Similarity=0.218 Sum_probs=85.3
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC---CCCCCC
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG---YEREAP 124 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~ 124 (204)
..++.+|||+|||+|..+..+++..++.++++++|+++.+++.|++++...+ ..++++++.+|+... ....++
T Consensus 61 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g----~~~~v~~~~~d~~~~l~~~~~~~~ 136 (248)
T 3tfw_A 61 LTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAG----VDQRVTLREGPALQSLESLGECPA 136 (248)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTT----CTTTEEEEESCHHHHHHTCCSCCC
T ss_pred hcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC----CCCcEEEEEcCHHHHHHhcCCCCC
Confidence 4577899999999999999999987447899999999999999999987643 124799999997542 222358
Q ss_pred eeEEEECCCccc---hhHHHHHhcCCCcEEEEEec
Q psy10572 125 YDIIHVSPSYFT---IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 125 ~D~v~~~~~~~~---~~~~~~~~Lk~gG~l~~~~~ 156 (204)
||+|+++..... +++.+.++|+|||++++.-.
T Consensus 137 fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~~~~ 171 (248)
T 3tfw_A 137 FDLIFIDADKPNNPHYLRWALRYSRPGTLIIGDNV 171 (248)
T ss_dssp CSEEEECSCGGGHHHHHHHHHHTCCTTCEEEEECC
T ss_pred eEEEEECCchHHHHHHHHHHHHhcCCCeEEEEeCC
Confidence 999999887654 56788999999999988543
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.1e-14 Score=109.45 Aligned_cols=116 Identities=16% Similarity=0.232 Sum_probs=84.6
Q ss_pred HHHHHHHHHh-ccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEec
Q psy10572 36 IHAQMLELLK-DKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWN 114 (204)
Q Consensus 36 ~~~~~~~~l~-~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d 114 (204)
....++..+. -.++++.+|||+|||+|..+..+++..++.++|+|+|+++.+++........ ..|+.++.+|
T Consensus 61 la~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~-------r~nv~~i~~D 133 (232)
T 3id6_C 61 LAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQR-------RPNIFPLLAD 133 (232)
T ss_dssp HHHHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHH-------CTTEEEEECC
T ss_pred HHHHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh-------cCCeEEEEcc
Confidence 3444444443 1257899999999999999999999887788999999999987655444433 2479999999
Q ss_pred CCCCC---CCCCCeeEEEECCCccchh----HHHHHhcCCCcEEEEEecCC
Q psy10572 115 GKHGY---EREAPYDIIHVSPSYFTIP----QKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 115 ~~~~~---~~~~~~D~v~~~~~~~~~~----~~~~~~Lk~gG~l~~~~~~~ 158 (204)
+.... ...++||+|+++....... ..+.+.|||||+|++++...
T Consensus 134 a~~~~~~~~~~~~~D~I~~d~a~~~~~~il~~~~~~~LkpGG~lvisik~~ 184 (232)
T 3id6_C 134 ARFPQSYKSVVENVDVLYVDIAQPDQTDIAIYNAKFFLKVNGDMLLVIKAR 184 (232)
T ss_dssp TTCGGGTTTTCCCEEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEEEC--
T ss_pred cccchhhhccccceEEEEecCCChhHHHHHHHHHHHhCCCCeEEEEEEccC
Confidence 76432 1135899999998775532 34456999999999986443
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.61 E-value=8.6e-15 Score=113.09 Aligned_cols=104 Identities=17% Similarity=0.135 Sum_probs=89.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
+.++.+|||+|||+|.++..+++.. +.++|+++|+++.+++.|+++++.++ ..++.++.+|+... ...++||+
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~-~~~~V~~vD~s~~av~~a~~n~~~n~-----l~~~~~~~~d~~~~-~~~~~~D~ 189 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYS-KPKLVYAIEKNPTAYHYLCENIKLNK-----LNNVIPILADNRDV-ELKDVADR 189 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHT-CCSEEEEEECCHHHHHHHHHHHHHTT-----CSSEEEEESCGGGC-CCTTCEEE
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcC-----CCCEEEEECChHHc-CccCCceE
Confidence 6788999999999999999999986 46799999999999999999998754 35788999998765 33568999
Q ss_pred EEECCCc--cchhHHHHHhcCCCcEEEEEecCC
Q psy10572 128 IHVSPSY--FTIPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 128 v~~~~~~--~~~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
|+++++. ..++..+.+.|+|||++++++...
T Consensus 190 Vi~d~p~~~~~~l~~~~~~LkpgG~l~~s~~~~ 222 (272)
T 3a27_A 190 VIMGYVHKTHKFLDKTFEFLKDRGVIHYHETVA 222 (272)
T ss_dssp EEECCCSSGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred EEECCcccHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence 9999874 457789999999999999988755
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.61 E-value=4.1e-15 Score=120.25 Aligned_cols=109 Identities=19% Similarity=0.221 Sum_probs=88.7
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCcc---ccCccceEEEEecCCCC------
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSE---LLDQGRVQFVVWNGKHG------ 118 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~d~~~~------ 118 (204)
+.++.+|||+|||+|..+..+++..++.++++|+|+++.+++.+++++...... ....++++++.+|+...
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~ 160 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE 160 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence 357789999999999999999998756779999999999999999987642100 01125899999998764
Q ss_pred CCCCCCeeEEEECCCccc------hhHHHHHhcCCCcEEEEEec
Q psy10572 119 YEREAPYDIIHVSPSYFT------IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 119 ~~~~~~~D~v~~~~~~~~------~~~~~~~~Lk~gG~l~~~~~ 156 (204)
..+.++||+|+++..+++ +++++.++|||||++++...
T Consensus 161 ~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~ 204 (383)
T 4fsd_A 161 GVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDV 204 (383)
T ss_dssp CCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEe
Confidence 566689999999988766 55899999999999999754
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=2.8e-15 Score=113.52 Aligned_cols=114 Identities=15% Similarity=0.157 Sum_probs=85.3
Q ss_pred ccCC-hHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHH---hCCCceEEEEEcCHHHHHHHHHHhhhcCccccCc
Q psy10572 30 DISS-PHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYM---AGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQ 105 (204)
Q Consensus 30 ~~~~-~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~ 105 (204)
.+.. +.....+...+. ..++.+|||||||+|..+..+++. ..+.++|+++|+++.+++.|+. . .
T Consensus 62 ~~~~~p~~~~~l~~~l~--~~~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~---~-------~ 129 (236)
T 2bm8_A 62 RMLKDPDTQAVYHDMLW--ELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS---D-------M 129 (236)
T ss_dssp ECCSCHHHHHHHHHHHH--HHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG---G-------C
T ss_pred cccCCHHHHHHHHHHHH--hcCCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc---c-------C
Confidence 3444 666666666665 345679999999999999999987 3366799999999999887761 1 2
Q ss_pred cceEEEEecCCCC---C-CCCCCeeEEEECCCccc---hhHHHHH-hcCCCcEEEEEe
Q psy10572 106 GRVQFVVWNGKHG---Y-EREAPYDIIHVSPSYFT---IPQKLLD-QLVPGGRMVMPV 155 (204)
Q Consensus 106 ~~~~~~~~d~~~~---~-~~~~~~D~v~~~~~~~~---~~~~~~~-~Lk~gG~l~~~~ 155 (204)
++++++.+|+... . ....+||+|+++..... .+..+.+ +|||||++++..
T Consensus 130 ~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~~~~~~~~~l~~~~r~~LkpGG~lv~~d 187 (236)
T 2bm8_A 130 ENITLHQGDCSDLTTFEHLREMAHPLIFIDNAHANTFNIMKWAVDHLLEEGDYFIIED 187 (236)
T ss_dssp TTEEEEECCSSCSGGGGGGSSSCSSEEEEESSCSSHHHHHHHHHHHTCCTTCEEEECS
T ss_pred CceEEEECcchhHHHHHhhccCCCCEEEECCchHhHHHHHHHHHHhhCCCCCEEEEEe
Confidence 5799999998763 2 23347999998776333 4566775 999999999953
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1e-15 Score=115.82 Aligned_cols=101 Identities=14% Similarity=0.054 Sum_probs=79.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC--CCCCCCe
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG--YEREAPY 125 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~ 125 (204)
..++.+|||+|||+|.++..+++.. ..+++|+|+|+.+++.|+++....+ .++.++.+|+... .++.++|
T Consensus 58 ~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~------~~v~~~~~d~~~~~~~~~~~~f 129 (236)
T 1zx0_A 58 SSKGGRVLEVGFGMAIAASKVQEAP--IDEHWIIECNDGVFQRLRDWAPRQT------HKVIPLKGLWEDVAPTLPDGHF 129 (236)
T ss_dssp TTTCEEEEEECCTTSHHHHHHHTSC--EEEEEEEECCHHHHHHHHHHGGGCS------SEEEEEESCHHHHGGGSCTTCE
T ss_pred CCCCCeEEEEeccCCHHHHHHHhcC--CCeEEEEcCCHHHHHHHHHHHHhcC------CCeEEEecCHHHhhcccCCCce
Confidence 4678899999999999999997643 2489999999999999999876532 5789999997754 4556789
Q ss_pred eEEEE-CCCc--c--------chhHHHHHhcCCCcEEEEEec
Q psy10572 126 DIIHV-SPSY--F--------TIPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 126 D~v~~-~~~~--~--------~~~~~~~~~Lk~gG~l~~~~~ 156 (204)
|+|++ .... + .+++++.++|||||++++...
T Consensus 130 D~V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 171 (236)
T 1zx0_A 130 DGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNL 171 (236)
T ss_dssp EEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCH
T ss_pred EEEEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEec
Confidence 99999 3221 1 136788999999999997543
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.61 E-value=2e-14 Score=103.88 Aligned_cols=118 Identities=19% Similarity=0.182 Sum_probs=93.8
Q ss_pred CcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccc
Q psy10572 28 GADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGR 107 (204)
Q Consensus 28 ~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~ 107 (204)
+.....+.+...+.+.+. +.++.+|||+|||+|.++..+++ +..+++++|+++.+++.+++++...+ .++
T Consensus 15 ~~~~~~~~~~~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~-----~~~ 84 (183)
T 2yxd_A 15 GVPITKEEIRAVSIGKLN--LNKDDVVVDVGCGSGGMTVEIAK---RCKFVYAIDYLDGAIEVTKQNLAKFN-----IKN 84 (183)
T ss_dssp TBCCCCHHHHHHHHHHHC--CCTTCEEEEESCCCSHHHHHHHT---TSSEEEEEECSHHHHHHHHHHHHHTT-----CCS
T ss_pred CCCcCHHHHHHHHHHHcC--CCCCCEEEEeCCCCCHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHHcC-----CCc
Confidence 344566777778887775 67888999999999999999988 34699999999999999999987743 357
Q ss_pred eEEEEecCCCCCCCCCCeeEEEECCCccc---hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 108 VQFVVWNGKHGYEREAPYDIIHVSPSYFT---IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 108 ~~~~~~d~~~~~~~~~~~D~v~~~~~~~~---~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
++++.+|+.. ..+.++||+|+++.+ .. +++.+.+. |||.+++..+...
T Consensus 85 ~~~~~~d~~~-~~~~~~~D~i~~~~~-~~~~~~l~~~~~~--~gG~l~~~~~~~~ 135 (183)
T 2yxd_A 85 CQIIKGRAED-VLDKLEFNKAFIGGT-KNIEKIIEILDKK--KINHIVANTIVLE 135 (183)
T ss_dssp EEEEESCHHH-HGGGCCCSEEEECSC-SCHHHHHHHHHHT--TCCEEEEEESCHH
T ss_pred EEEEECCccc-cccCCCCcEEEECCc-ccHHHHHHHHhhC--CCCEEEEEecccc
Confidence 9999999766 334468999999987 33 44566666 9999999886554
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.3e-15 Score=111.88 Aligned_cols=111 Identities=23% Similarity=0.265 Sum_probs=88.5
Q ss_pred HHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCC
Q psy10572 43 LLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYERE 122 (204)
Q Consensus 43 ~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 122 (204)
.+...++++.+|+|+|||+|.+++.+++.. +..+|+++|+++.+++.|+++++.++ ...++++..+|+.+...+.
T Consensus 14 ~i~~~v~~g~~VlDIGtGsG~l~i~la~~~-~~~~V~AvDi~~~al~~A~~N~~~~g----l~~~I~~~~gD~l~~~~~~ 88 (230)
T 3lec_A 14 KVANYVPKGARLLDVGSDHAYLPIFLLQMG-YCDFAIAGEVVNGPYQSALKNVSEHG----LTSKIDVRLANGLSAFEEA 88 (230)
T ss_dssp HHHTTSCTTEEEEEETCSTTHHHHHHHHTT-CEEEEEEEESSHHHHHHHHHHHHHTT----CTTTEEEEECSGGGGCCGG
T ss_pred HHHHhCCCCCEEEEECCchHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcC----CCCcEEEEECchhhccccc
Confidence 344456788999999999999999999986 66789999999999999999998865 2347999999988776554
Q ss_pred CCeeEEEECCCc----cchhHHHHHhcCCCcEEEEEecCC
Q psy10572 123 APYDIIHVSPSY----FTIPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 123 ~~~D~v~~~~~~----~~~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
.+||+|++.... ..++......|+++|+|+++-...
T Consensus 89 ~~~D~IviaGmGg~lI~~IL~~~~~~l~~~~~lIlqp~~~ 128 (230)
T 3lec_A 89 DNIDTITICGMGGRLIADILNNDIDKLQHVKTLVLQPNNR 128 (230)
T ss_dssp GCCCEEEEEEECHHHHHHHHHHTGGGGTTCCEEEEEESSC
T ss_pred cccCEEEEeCCchHHHHHHHHHHHHHhCcCCEEEEECCCC
Confidence 479988754433 345567778899999998866443
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.1e-14 Score=106.70 Aligned_cols=107 Identities=18% Similarity=0.162 Sum_probs=85.7
Q ss_pred HHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC
Q psy10572 39 QMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG 118 (204)
Q Consensus 39 ~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~ 118 (204)
.+.+.+. ..++.+|||+|||+|..+..+++.. .+++++|+++.+++.+++++.... .+++.++.+|+...
T Consensus 23 ~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~-----~~~~~~~~~d~~~~ 92 (199)
T 2xvm_A 23 EVLEAVK--VVKPGKTLDLGCGNGRNSLYLAANG---YDVDAWDKNAMSIANVERIKSIEN-----LDNLHTRVVDLNNL 92 (199)
T ss_dssp HHHHHTT--TSCSCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHHT-----CTTEEEEECCGGGC
T ss_pred HHHHHhh--ccCCCeEEEEcCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHhCC-----CCCcEEEEcchhhC
Confidence 3444444 4567799999999999999998863 499999999999999999887643 34799999998765
Q ss_pred CCCCCCeeEEEECCCccc--------hhHHHHHhcCCCcEEEEEec
Q psy10572 119 YEREAPYDIIHVSPSYFT--------IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 119 ~~~~~~~D~v~~~~~~~~--------~~~~~~~~Lk~gG~l~~~~~ 156 (204)
.. .++||+|+++..+++ +++.+.++|+|||.+++...
T Consensus 93 ~~-~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 137 (199)
T 2xvm_A 93 TF-DRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAA 137 (199)
T ss_dssp CC-CCCEEEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CC-CCCceEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEe
Confidence 55 678999999877654 45788899999999877553
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.61 E-value=6.8e-15 Score=108.82 Aligned_cols=117 Identities=15% Similarity=0.098 Sum_probs=90.7
Q ss_pred HHHHHHHHHhcc-CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEec
Q psy10572 36 IHAQMLELLKDK-IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWN 114 (204)
Q Consensus 36 ~~~~~~~~l~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d 114 (204)
+...+++.+... ..++.+|||+|||+|..+..++... +..+++++|+++.+++.++.++...+ ..++++..+|
T Consensus 50 ~~~~~~~~l~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~v~~~~~d 123 (207)
T 1jsx_A 50 LVRHILDSIVVAPYLQGERFIDVGTGPGLPGIPLSIVR-PEAHFTLLDSLGKRVRFLRQVQHELK-----LENIEPVQSR 123 (207)
T ss_dssp HHHHHHHHHHHGGGCCSSEEEEETCTTTTTHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHTT-----CSSEEEEECC
T ss_pred HHHHHHhhhhhhhhcCCCeEEEECCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcC-----CCCeEEEecc
Confidence 444555555411 1247899999999999999999987 56799999999999999999987643 3469999999
Q ss_pred CCCCCCCCCCeeEEEECCCc--cchhHHHHHhcCCCcEEEEEecCCC
Q psy10572 115 GKHGYEREAPYDIIHVSPSY--FTIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 115 ~~~~~~~~~~~D~v~~~~~~--~~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
+.... +.++||+|+++... ..+++.+.++|+|||.+++......
T Consensus 124 ~~~~~-~~~~~D~i~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~ 169 (207)
T 1jsx_A 124 VEEFP-SEPPFDGVISRAFASLNDMVSWCHHLPGEQGRFYALKGQMP 169 (207)
T ss_dssp TTTSC-CCSCEEEEECSCSSSHHHHHHHHTTSEEEEEEEEEEESSCC
T ss_pred hhhCC-ccCCcCEEEEeccCCHHHHHHHHHHhcCCCcEEEEEeCCCc
Confidence 87654 34689999987532 2366888899999999999876544
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.4e-15 Score=113.47 Aligned_cols=121 Identities=21% Similarity=0.254 Sum_probs=97.0
Q ss_pred CcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccc
Q psy10572 28 GADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGR 107 (204)
Q Consensus 28 ~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~ 107 (204)
+..+..+.....+...+. ..++.+|||+|||+|..+..+++.. +.++++++|+++.+++.|++++...+ ...+
T Consensus 34 ~~~~~~~~~~~~l~~~~~--~~~~~~vLdiG~G~G~~~~~la~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~----~~~~ 106 (233)
T 2gpy_A 34 QVPIMDLLGMESLLHLLK--MAAPARILEIGTAIGYSAIRMAQAL-PEATIVSIERDERRYEEAHKHVKALG----LESR 106 (233)
T ss_dssp TCCCCCHHHHHHHHHHHH--HHCCSEEEEECCTTSHHHHHHHHHC-TTCEEEEECCCHHHHHHHHHHHHHTT----CTTT
T ss_pred CCCCcCHHHHHHHHHHHh--ccCCCEEEEecCCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcC----CCCc
Confidence 445667777777777665 5678899999999999999999987 56799999999999999999987643 1246
Q ss_pred eEEEEecCCCCCC-C--CCCeeEEEECCCcc---chhHHHHHhcCCCcEEEEEe
Q psy10572 108 VQFVVWNGKHGYE-R--EAPYDIIHVSPSYF---TIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 108 ~~~~~~d~~~~~~-~--~~~~D~v~~~~~~~---~~~~~~~~~Lk~gG~l~~~~ 155 (204)
+.++.+|+..... . .++||+|+++.+.. .+++.+.++|+|||++++..
T Consensus 107 v~~~~~d~~~~~~~~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~ 160 (233)
T 2gpy_A 107 IELLFGDALQLGEKLELYPLFDVLFIDAAKGQYRRFFDMYSPMVRPGGLILSDN 160 (233)
T ss_dssp EEEECSCGGGSHHHHTTSCCEEEEEEEGGGSCHHHHHHHHGGGEEEEEEEEEET
T ss_pred EEEEECCHHHHHHhcccCCCccEEEECCCHHHHHHHHHHHHHHcCCCeEEEEEc
Confidence 9999999765321 1 36899999988774 35688999999999999964
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=3.9e-15 Score=113.56 Aligned_cols=104 Identities=18% Similarity=0.166 Sum_probs=85.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCC---CCCCe
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE---REAPY 125 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~ 125 (204)
.++.+|||+|||+|..+..++... +.++|+++|+++.+++.+++++...+ ..+++++++|+.+... ..++|
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~-----l~~v~~~~~d~~~~~~~~~~~~~f 152 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVR-PELELVLVDATRKKVAFVERAIEVLG-----LKGARALWGRAEVLAREAGHREAY 152 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHT-----CSSEEEEECCHHHHTTSTTTTTCE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhC-----CCceEEEECcHHHhhcccccCCCc
Confidence 467899999999999999999987 67899999999999999999988743 4579999999765432 23689
Q ss_pred eEEEECCCc--cchhHHHHHhcCCCcEEEEEecCC
Q psy10572 126 DIIHVSPSY--FTIPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 126 D~v~~~~~~--~~~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
|+|++.... ..+++.+.++|+|||++++.....
T Consensus 153 D~I~s~a~~~~~~ll~~~~~~LkpgG~l~~~~g~~ 187 (249)
T 3g89_A 153 ARAVARAVAPLCVLSELLLPFLEVGGAAVAMKGPR 187 (249)
T ss_dssp EEEEEESSCCHHHHHHHHGGGEEEEEEEEEEECSC
T ss_pred eEEEECCcCCHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 999997654 346788999999999999866543
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.60 E-value=7.5e-15 Score=111.82 Aligned_cols=101 Identities=18% Similarity=0.181 Sum_probs=84.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
..++.+|||+|||+|.++..+++.. ..+++++|+++.+++.+++++.. ..++.++.+|+.....+.++||+
T Consensus 91 ~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~-------~~~~~~~~~d~~~~~~~~~~fD~ 161 (254)
T 1xtp_A 91 GHGTSRALDCGAGIGRITKNLLTKL--YATTDLLEPVKHMLEEAKRELAG-------MPVGKFILASMETATLPPNTYDL 161 (254)
T ss_dssp TCCCSEEEEETCTTTHHHHHTHHHH--CSEEEEEESCHHHHHHHHHHTTT-------SSEEEEEESCGGGCCCCSSCEEE
T ss_pred ccCCCEEEEECCCcCHHHHHHHHhh--cCEEEEEeCCHHHHHHHHHHhcc-------CCceEEEEccHHHCCCCCCCeEE
Confidence 3567899999999999999998875 24799999999999999998754 24789999998776566678999
Q ss_pred EEECCCccch--------hHHHHHhcCCCcEEEEEecC
Q psy10572 128 IHVSPSYFTI--------PQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 128 v~~~~~~~~~--------~~~~~~~Lk~gG~l~~~~~~ 157 (204)
|++...++++ ++++.++|+|||++++..+.
T Consensus 162 v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 199 (254)
T 1xtp_A 162 IVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENC 199 (254)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred EEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecC
Confidence 9998887664 46888999999999998753
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=5.8e-15 Score=112.51 Aligned_cols=118 Identities=19% Similarity=0.239 Sum_probs=89.8
Q ss_pred CChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEE
Q psy10572 32 SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV 111 (204)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 111 (204)
..+.....+...+. ..++.+|||+|||+|+.+..+++.++++++++++|+++.+++.|++++...+ ..++++++
T Consensus 63 ~~~~~~~ll~~l~~--~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g----~~~~i~~~ 136 (247)
T 1sui_A 63 TSADEGQFLSMLLK--LINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAG----VDHKIDFR 136 (247)
T ss_dssp CCHHHHHHHHHHHH--HTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTT----CGGGEEEE
T ss_pred cCHHHHHHHHHHHH--hhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC----CCCCeEEE
Confidence 34444443333333 4566799999999999999999987446899999999999999999987643 13579999
Q ss_pred EecCCCCCC-------CCCCeeEEEECCCccc---hhHHHHHhcCCCcEEEEEe
Q psy10572 112 VWNGKHGYE-------REAPYDIIHVSPSYFT---IPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 112 ~~d~~~~~~-------~~~~~D~v~~~~~~~~---~~~~~~~~Lk~gG~l~~~~ 155 (204)
.+|+.+... ..++||+|+++..... +++.+.++|+|||++++.-
T Consensus 137 ~gda~~~l~~l~~~~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~d~ 190 (247)
T 1sui_A 137 EGPALPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_dssp ESCHHHHHHHHHHSGGGTTCBSEEEECSCSTTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred ECCHHHHHHHHHhccCCCCCEEEEEEcCchHHHHHHHHHHHHhCCCCeEEEEec
Confidence 999764321 1468999999876543 5678899999999999853
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.60 E-value=1.4e-14 Score=106.78 Aligned_cols=102 Identities=19% Similarity=0.141 Sum_probs=83.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
+.++ +|||+|||+|.++..+++.. .+++++|+++.+++.++++....+ .++.++.+|+.....+.++||+
T Consensus 28 ~~~~-~vLdiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~------~~~~~~~~d~~~~~~~~~~fD~ 97 (202)
T 2kw5_A 28 IPQG-KILCLAEGEGRNACFLASLG---YEVTAVDQSSVGLAKAKQLAQEKG------VKITTVQSNLADFDIVADAWEG 97 (202)
T ss_dssp SCSS-EEEECCCSCTHHHHHHHTTT---CEEEEECSSHHHHHHHHHHHHHHT------CCEEEECCBTTTBSCCTTTCSE
T ss_pred CCCC-CEEEECCCCCHhHHHHHhCC---CeEEEEECCHHHHHHHHHHHHhcC------CceEEEEcChhhcCCCcCCccE
Confidence 4566 99999999999999988863 499999999999999999887633 2789999998776656678999
Q ss_pred EEECCCcc------chhHHHHHhcCCCcEEEEEecCCC
Q psy10572 128 IHVSPSYF------TIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 128 v~~~~~~~------~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
|++..... .+++.+.++|+|||.+++.++...
T Consensus 98 v~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 135 (202)
T 2kw5_A 98 IVSIFCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPE 135 (202)
T ss_dssp EEEECCCCCHHHHHHHHHHHHTTCCSSEEEEEEEECTT
T ss_pred EEEEhhcCCHHHHHHHHHHHHHhcCCCcEEEEEEeccc
Confidence 99864332 245788899999999999987654
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.60 E-value=5e-15 Score=110.91 Aligned_cols=120 Identities=13% Similarity=0.098 Sum_probs=89.2
Q ss_pred CChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEE
Q psy10572 32 SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV 111 (204)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 111 (204)
..+.....+...+. ..++.+|||+|||+|..+..+++.+++.++++++|+++.+++.|++++...+ ..++++++
T Consensus 42 ~~~~~~~~l~~l~~--~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~----~~~~v~~~ 115 (221)
T 3u81_A 42 VGDAKGQIMDAVIR--EYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAG----LQDKVTIL 115 (221)
T ss_dssp CCHHHHHHHHHHHH--HHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHT----CGGGEEEE
T ss_pred cCHHHHHHHHHHHH--hcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcC----CCCceEEE
Confidence 34444444444443 4567899999999999999999976456799999999999999999987744 12469999
Q ss_pred EecCCCC---CC---CCCCeeEEEECCCccchh------HHHHHhcCCCcEEEEEecCC
Q psy10572 112 VWNGKHG---YE---REAPYDIIHVSPSYFTIP------QKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 112 ~~d~~~~---~~---~~~~~D~v~~~~~~~~~~------~~~~~~Lk~gG~l~~~~~~~ 158 (204)
.+|+.+. .. ..++||+|+++....+.. ..+ ++|+|||++++.....
T Consensus 116 ~~d~~~~l~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~~~~~~ 173 (221)
T 3u81_A 116 NGASQDLIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKC-GLLRKGTVLLADNVIV 173 (221)
T ss_dssp ESCHHHHGGGTTTTSCCCCCSEEEECSCGGGHHHHHHHHHHT-TCCCTTCEEEESCCCC
T ss_pred ECCHHHHHHHHHHhcCCCceEEEEEcCCcccchHHHHHHHhc-cccCCCeEEEEeCCCC
Confidence 9996432 11 126899999998776644 223 8999999999865443
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.8e-14 Score=111.88 Aligned_cols=102 Identities=16% Similarity=0.127 Sum_probs=83.9
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
+.++.+|||+|||+|.++..+++..+ ++++|+|+|+.+++.+++++...+ ..++++++.+|+.... ++||+
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvd~s~~~~~~a~~~~~~~~----~~~~~~~~~~d~~~~~---~~fD~ 132 (287)
T 1kpg_A 62 LQPGMTLLDVGCGWGATMMRAVEKYD--VNVVGLTLSKNQANHVQQLVANSE----NLRSKRVLLAGWEQFD---EPVDR 132 (287)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHTCC----CCSCEEEEESCGGGCC---CCCSE
T ss_pred CCCcCEEEEECCcccHHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcC----CCCCeEEEECChhhCC---CCeeE
Confidence 46788999999999999999997653 399999999999999999887633 1357999999976532 78999
Q ss_pred EEECCCccch--------hHHHHHhcCCCcEEEEEecCC
Q psy10572 128 IHVSPSYFTI--------PQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 128 v~~~~~~~~~--------~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
|++...++++ ++++.++|||||.+++..+..
T Consensus 133 v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 171 (287)
T 1kpg_A 133 IVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITG 171 (287)
T ss_dssp EEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEE
T ss_pred EEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecC
Confidence 9998776553 578899999999999977654
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.60 E-value=8.7e-15 Score=108.61 Aligned_cols=104 Identities=18% Similarity=0.243 Sum_probs=83.8
Q ss_pred HHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCC
Q psy10572 41 LELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE 120 (204)
Q Consensus 41 ~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 120 (204)
+..+...+.++.+|||+|||+|.++..+++.. .+++|+|+++.+++.++++. ++.++.+|+....
T Consensus 34 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~-----------~~~~~~~d~~~~~- 98 (211)
T 3e23_A 34 LTKFLGELPAGAKILELGCGAGYQAEAMLAAG---FDVDATDGSPELAAEASRRL-----------GRPVRTMLFHQLD- 98 (211)
T ss_dssp HHHHHTTSCTTCEEEESSCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHH-----------TSCCEECCGGGCC-
T ss_pred HHHHHHhcCCCCcEEEECCCCCHHHHHHHHcC---CeEEEECCCHHHHHHHHHhc-----------CCceEEeeeccCC-
Confidence 33344446788899999999999999999863 49999999999999999875 3456677766554
Q ss_pred CCCCeeEEEECCCccch--------hHHHHHhcCCCcEEEEEecCCC
Q psy10572 121 REAPYDIIHVSPSYFTI--------PQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 121 ~~~~~D~v~~~~~~~~~--------~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
..++||+|+++..++++ ++++.++|+|||.+++.++...
T Consensus 99 ~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 145 (211)
T 3e23_A 99 AIDAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKSGE 145 (211)
T ss_dssp CCSCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCS
T ss_pred CCCcEEEEEecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCCC
Confidence 56889999999887653 4788899999999999887654
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.60 E-value=4.5e-15 Score=112.03 Aligned_cols=110 Identities=19% Similarity=0.150 Sum_probs=88.0
Q ss_pred HHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCC
Q psy10572 43 LLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYERE 122 (204)
Q Consensus 43 ~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 122 (204)
.+...++++.+|||+|||+|.+++.+++.. +..+++++|+++.+++.|+++++.++ ...++++..+|+.+...+.
T Consensus 14 ~i~~~v~~g~~VlDIGtGsG~l~i~la~~~-~~~~V~avDi~~~al~~A~~N~~~~g----l~~~I~v~~gD~l~~~~~~ 88 (244)
T 3gnl_A 14 KVASYITKNERIADIGSDHAYLPCFAVKNQ-TASFAIAGEVVDGPFQSAQKQVRSSG----LTEQIDVRKGNGLAVIEKK 88 (244)
T ss_dssp HHHTTCCSSEEEEEETCSTTHHHHHHHHTT-SEEEEEEEESSHHHHHHHHHHHHHTT----CTTTEEEEECSGGGGCCGG
T ss_pred HHHHhCCCCCEEEEECCccHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcC----CCceEEEEecchhhccCcc
Confidence 344456888999999999999999999976 66689999999999999999998865 1346999999988776544
Q ss_pred CCeeEEEECCC----ccchhHHHHHhcCCCcEEEEEecC
Q psy10572 123 APYDIIHVSPS----YFTIPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 123 ~~~D~v~~~~~----~~~~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
.+||+|++... ...++......|+++++|+++-..
T Consensus 89 ~~~D~IviagmGg~lI~~IL~~~~~~L~~~~~lIlq~~~ 127 (244)
T 3gnl_A 89 DAIDTIVIAGMGGTLIRTILEEGAAKLAGVTKLILQPNI 127 (244)
T ss_dssp GCCCEEEEEEECHHHHHHHHHHTGGGGTTCCEEEEEESS
T ss_pred ccccEEEEeCCchHHHHHHHHHHHHHhCCCCEEEEEcCC
Confidence 46998876433 234567778889999999986644
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.8e-14 Score=106.87 Aligned_cols=104 Identities=22% Similarity=0.291 Sum_probs=84.6
Q ss_pred HHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCc-eEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC
Q psy10572 40 MLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEG-RVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG 118 (204)
Q Consensus 40 ~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~ 118 (204)
..+.+.....++.+|||+|||+|.++..+ .. +++++|+++.+++.++++. +++.++.+|+...
T Consensus 26 ~~~~l~~~~~~~~~vLdiG~G~G~~~~~l------~~~~v~~vD~s~~~~~~a~~~~----------~~~~~~~~d~~~~ 89 (211)
T 2gs9_A 26 EERALKGLLPPGESLLEVGAGTGYWLRRL------PYPQKVGVEPSEAMLAVGRRRA----------PEATWVRAWGEAL 89 (211)
T ss_dssp HHHHHHTTCCCCSEEEEETCTTCHHHHHC------CCSEEEEECCCHHHHHHHHHHC----------TTSEEECCCTTSC
T ss_pred HHHHHHHhcCCCCeEEEECCCCCHhHHhC------CCCeEEEEeCCHHHHHHHHHhC----------CCcEEEEcccccC
Confidence 33444444568889999999999998877 23 8999999999999998875 3678899998776
Q ss_pred CCCCCCeeEEEECCCccc------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 119 YEREAPYDIIHVSPSYFT------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 119 ~~~~~~~D~v~~~~~~~~------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
..+.++||+|++...+++ +++++.++|||||.+++.+++..
T Consensus 90 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 136 (211)
T 2gs9_A 90 PFPGESFDVVLLFTTLEFVEDVERVLLEARRVLRPGGALVVGVLEAL 136 (211)
T ss_dssp CSCSSCEEEEEEESCTTTCSCHHHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred CCCCCcEEEEEEcChhhhcCCHHHHHHHHHHHcCCCCEEEEEecCCc
Confidence 666678999999887765 45788999999999999987665
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.60 E-value=2e-14 Score=110.87 Aligned_cols=116 Identities=20% Similarity=0.259 Sum_probs=88.3
Q ss_pred HHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHH------HHHHHHHHhhhcCccccCccceEE
Q psy10572 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVME------LAESSIKNIDKGNSELLDQGRVQF 110 (204)
Q Consensus 37 ~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~------~~~~a~~~~~~~~~~~~~~~~~~~ 110 (204)
...+++.+. +.++.+|||||||+|.++..+++..++.++++|+|+|+. +++.+++++...+ ..+++++
T Consensus 32 ~~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~----~~~~v~~ 105 (275)
T 3bkx_A 32 RLAIAEAWQ--VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGP----LGDRLTV 105 (275)
T ss_dssp HHHHHHHHT--CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTST----TGGGEEE
T ss_pred HHHHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcC----CCCceEE
Confidence 334444444 678899999999999999999998755579999999997 8999999887633 1257999
Q ss_pred EEec-CC--CCCCCCCCeeEEEECCCccch------hHHHHHhcCCCcEEEEEecCC
Q psy10572 111 VVWN-GK--HGYEREAPYDIIHVSPSYFTI------PQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 111 ~~~d-~~--~~~~~~~~~D~v~~~~~~~~~------~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
+.+| .. ....+.++||+|+++..++++ .+.+..+++|||++++.....
T Consensus 106 ~~~d~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~~ 162 (275)
T 3bkx_A 106 HFNTNLSDDLGPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWSM 162 (275)
T ss_dssp ECSCCTTTCCGGGTTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEECS
T ss_pred EECChhhhccCCCCCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEecC
Confidence 9998 32 223345789999998887653 355566677799999977554
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.60 E-value=9.2e-15 Score=110.56 Aligned_cols=109 Identities=28% Similarity=0.339 Sum_probs=86.5
Q ss_pred HHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC
Q psy10572 39 QMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG 118 (204)
Q Consensus 39 ~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~ 118 (204)
.+.+.+...++++.+|||+|||+|.++..+++. .+++++|+++.+++.|+++..... .+++++.+|+...
T Consensus 22 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~----~~v~~vD~s~~~~~~a~~~~~~~~------~~~~~~~~d~~~~ 91 (243)
T 3d2l_A 22 EWVAWVLEQVEPGKRIADIGCGTGTATLLLADH----YEVTGVDLSEEMLEIAQEKAMETN------RHVDFWVQDMREL 91 (243)
T ss_dssp HHHHHHHHHSCTTCEEEEESCTTCHHHHHHTTT----SEEEEEESCHHHHHHHHHHHHHTT------CCCEEEECCGGGC
T ss_pred HHHHHHHHHcCCCCeEEEecCCCCHHHHHHhhC----CeEEEEECCHHHHHHHHHhhhhcC------CceEEEEcChhhc
Confidence 344445545677899999999999999988875 499999999999999999886532 4689999997765
Q ss_pred CCCCCCeeEEEECC-Cccc---------hhHHHHHhcCCCcEEEEEecCC
Q psy10572 119 YEREAPYDIIHVSP-SYFT---------IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 119 ~~~~~~~D~v~~~~-~~~~---------~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
..+ ++||+|++.. .+++ +++.+.++|+|||.+++.+++.
T Consensus 92 ~~~-~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 140 (243)
T 3d2l_A 92 ELP-EPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHSP 140 (243)
T ss_dssp CCS-SCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred CCC-CCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEcCCH
Confidence 444 7899999875 4443 3478889999999999977654
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.60 E-value=7.3e-14 Score=106.02 Aligned_cols=116 Identities=24% Similarity=0.270 Sum_probs=93.8
Q ss_pred hHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe
Q psy10572 34 PHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW 113 (204)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 113 (204)
+.....+...+. +.++.+|||+|||+|.++..+++. ..+++++|+++.+++.|+++....+ ..+++++..+
T Consensus 77 ~~~~~~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~----~~~~~~~~~~ 147 (248)
T 2yvl_A 77 PKDSFYIALKLN--LNKEKRVLEFGTGSGALLAVLSEV---AGEVWTFEAVEEFYKTAQKNLKKFN----LGKNVKFFNV 147 (248)
T ss_dssp HHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH---SSEEEEECSCHHHHHHHHHHHHHTT----CCTTEEEECS
T ss_pred chhHHHHHHhcC--CCCCCEEEEeCCCccHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHHcC----CCCcEEEEEc
Confidence 444445555554 678899999999999999999987 3499999999999999999987643 1257899999
Q ss_pred cCCCCCCCCCCeeEEEECCCcc-chhHHHHHhcCCCcEEEEEecCC
Q psy10572 114 NGKHGYEREAPYDIIHVSPSYF-TIPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 114 d~~~~~~~~~~~D~v~~~~~~~-~~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
|......+.++||+|+++.+.. ..++.+.++|+|||++++.++..
T Consensus 148 d~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 193 (248)
T 2yvl_A 148 DFKDAEVPEGIFHAAFVDVREPWHYLEKVHKSLMEGAPVGFLLPTA 193 (248)
T ss_dssp CTTTSCCCTTCBSEEEECSSCGGGGHHHHHHHBCTTCEEEEEESSH
T ss_pred ChhhcccCCCcccEEEECCcCHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence 9877543456899999987765 67899999999999999988754
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=7.8e-15 Score=109.83 Aligned_cols=105 Identities=25% Similarity=0.278 Sum_probs=84.3
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCC-----C
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYER-----E 122 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-----~ 122 (204)
..++.+|||+|||+|..+..+++..++.++++++|+++.+++.|++++...+ ..++++++.+|+.+.... .
T Consensus 56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~~~~~~~~~~ 131 (223)
T 3duw_A 56 IQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERAN----LNDRVEVRTGLALDSLQQIENEKY 131 (223)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTT----CTTTEEEEESCHHHHHHHHHHTTC
T ss_pred hhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC----CCCcEEEEEcCHHHHHHHHHhcCC
Confidence 4577899999999999999999987436799999999999999999987643 124699999997543211 1
Q ss_pred CCeeEEEECCCccc---hhHHHHHhcCCCcEEEEEec
Q psy10572 123 APYDIIHVSPSYFT---IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 123 ~~~D~v~~~~~~~~---~~~~~~~~Lk~gG~l~~~~~ 156 (204)
++||+|+++..... +++.+.++|+|||++++...
T Consensus 132 ~~fD~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~~~ 168 (223)
T 3duw_A 132 EPFDFIFIDADKQNNPAYFEWALKLSRPGTVIIGDNV 168 (223)
T ss_dssp CCCSEEEECSCGGGHHHHHHHHHHTCCTTCEEEEESC
T ss_pred CCcCEEEEcCCcHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 57999999987654 56788999999999888543
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.9e-14 Score=107.01 Aligned_cols=108 Identities=19% Similarity=0.234 Sum_probs=87.9
Q ss_pred HHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCC
Q psy10572 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKH 117 (204)
Q Consensus 38 ~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 117 (204)
..+.+.+. .+.++.+|||+|||+|.++..+++.. .+++|+|+++.+++.+++. ...+++++.+|+..
T Consensus 35 ~~~~~~l~-~~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~---------~~~~~~~~~~d~~~ 101 (218)
T 3ou2_A 35 PAALERLR-AGNIRGDVLELASGTGYWTRHLSGLA---DRVTALDGSAEMIAEAGRH---------GLDNVEFRQQDLFD 101 (218)
T ss_dssp HHHHHHHT-TTTSCSEEEEESCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHGGG---------CCTTEEEEECCTTS
T ss_pred HHHHHHHh-cCCCCCeEEEECCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHhc---------CCCCeEEEeccccc
Confidence 34445444 25677899999999999999999873 4999999999999999871 13579999999877
Q ss_pred CCCCCCCeeEEEECCCccc--------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 118 GYEREAPYDIIHVSPSYFT--------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 118 ~~~~~~~~D~v~~~~~~~~--------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
. .+.++||+|+++..+++ +++++.++|+|||.+++..++..
T Consensus 102 ~-~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 150 (218)
T 3ou2_A 102 W-TPDRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDH 150 (218)
T ss_dssp C-CCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred C-CCCCceeEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCC
Confidence 6 56689999999988765 34788899999999999987764
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.60 E-value=2.1e-15 Score=116.59 Aligned_cols=118 Identities=17% Similarity=0.106 Sum_probs=92.1
Q ss_pred HHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCC
Q psy10572 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGK 116 (204)
Q Consensus 37 ~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~ 116 (204)
.......+. +.++.+|||+|||+|..+..++......++++++|+++.+++.+++++...+ ..++.++.+|+.
T Consensus 72 s~l~~~~l~--~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g-----~~~v~~~~~D~~ 144 (274)
T 3ajd_A 72 SMIPPIVLN--PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMG-----VLNTIIINADMR 144 (274)
T ss_dssp GGHHHHHHC--CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTT-----CCSEEEEESCHH
T ss_pred HHHHHHHhC--CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhC-----CCcEEEEeCChH
Confidence 333444454 6788999999999999999999987334799999999999999999988743 458999999976
Q ss_pred CCCC----CCCCeeEEEECCCcc------------------------chhHHHHHhcCCCcEEEEEecCCCCc
Q psy10572 117 HGYE----REAPYDIIHVSPSYF------------------------TIPQKLLDQLVPGGRMVMPVGEPFKG 161 (204)
Q Consensus 117 ~~~~----~~~~~D~v~~~~~~~------------------------~~~~~~~~~Lk~gG~l~~~~~~~~~~ 161 (204)
.... ..++||+|++++++. .+++.+.++|||||++++++++....
T Consensus 145 ~~~~~~~~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~~~ 217 (274)
T 3ajd_A 145 KYKDYLLKNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVE 217 (274)
T ss_dssp HHHHHHHHTTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCCTT
T ss_pred hcchhhhhccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCChH
Confidence 4322 246799999986542 24577888999999999988766433
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=3.2e-15 Score=113.18 Aligned_cols=99 Identities=14% Similarity=0.099 Sum_probs=78.9
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCC--CCCCCCCe
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKH--GYEREAPY 125 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~ 125 (204)
..++.+|||||||+|..+..+++.. + .++++||+++.+++.|+++....+ .++.++.+|+.. ...+.++|
T Consensus 58 ~~~G~rVLdiG~G~G~~~~~~~~~~-~-~~v~~id~~~~~~~~a~~~~~~~~------~~~~~~~~~a~~~~~~~~~~~F 129 (236)
T 3orh_A 58 SSKGGRVLEVGFGMAIAASKVQEAP-I-DEHWIIECNDGVFQRLRDWAPRQT------HKVIPLKGLWEDVAPTLPDGHF 129 (236)
T ss_dssp TTTCEEEEEECCTTSHHHHHHTTSC-E-EEEEEEECCHHHHHHHHHHGGGCS------SEEEEEESCHHHHGGGSCTTCE
T ss_pred ccCCCeEEEECCCccHHHHHHHHhC-C-cEEEEEeCCHHHHHHHHHHHhhCC------CceEEEeehHHhhcccccccCC
Confidence 4788999999999999999998864 3 489999999999999999887633 578888888653 23456789
Q ss_pred eEEEECCCcc-----c------hhHHHHHhcCCCcEEEEE
Q psy10572 126 DIIHVSPSYF-----T------IPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 126 D~v~~~~~~~-----~------~~~~~~~~Lk~gG~l~~~ 154 (204)
|.|+.+.... + +++++.++|||||+|++.
T Consensus 130 D~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~ 169 (236)
T 3orh_A 130 DGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC 169 (236)
T ss_dssp EEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred ceEEEeeeecccchhhhcchhhhhhhhhheeCCCCEEEEE
Confidence 9998765432 1 347889999999999874
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.60 E-value=8.3e-15 Score=112.40 Aligned_cols=109 Identities=19% Similarity=0.231 Sum_probs=88.4
Q ss_pred ChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEE
Q psy10572 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVV 112 (204)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 112 (204)
.+.+...+.+.+. ..++.+|||+|||+|.++..+++ +.++++|+|+|+.+++.++.+ .+++++.
T Consensus 19 ~~~~~~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~-----------~~~~~~~ 82 (261)
T 3ege_A 19 DIRIVNAIINLLN--LPKGSVIADIGAGTGGYSVALAN---QGLFVYAVEPSIVMRQQAVVH-----------PQVEWFT 82 (261)
T ss_dssp CHHHHHHHHHHHC--CCTTCEEEEETCTTSHHHHHHHT---TTCEEEEECSCHHHHHSSCCC-----------TTEEEEC
T ss_pred cHHHHHHHHHHhC--CCCCCEEEEEcCcccHHHHHHHh---CCCEEEEEeCCHHHHHHHHhc-----------cCCEEEE
Confidence 3456666666665 57889999999999999999987 346999999999988877543 2789999
Q ss_pred ecCCCCCCCCCCeeEEEECCCccc------hhHHHHHhcCCCcEEEEEecCC
Q psy10572 113 WNGKHGYEREAPYDIIHVSPSYFT------IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 113 ~d~~~~~~~~~~~D~v~~~~~~~~------~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
+|+.....+.++||+|++...+++ +++++.++|| ||.+++..++.
T Consensus 83 ~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~~~ 133 (261)
T 3ege_A 83 GYAENLALPDKSVDGVISILAIHHFSHLEKSFQEMQRIIR-DGTIVLLTFDI 133 (261)
T ss_dssp CCTTSCCSCTTCBSEEEEESCGGGCSSHHHHHHHHHHHBC-SSCEEEEEECG
T ss_pred CchhhCCCCCCCEeEEEEcchHhhccCHHHHHHHHHHHhC-CcEEEEEEcCC
Confidence 998876666789999999988765 4589999999 99888777654
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.60 E-value=6e-16 Score=117.63 Aligned_cols=118 Identities=13% Similarity=0.245 Sum_probs=91.5
Q ss_pred CChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEE
Q psy10572 32 SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV 111 (204)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 111 (204)
..+.....+...+. ..++.+|||+|||+|..+..+++..+++++|+++|+++.+++.|++++...+ ..++++++
T Consensus 44 i~~~~~~~l~~l~~--~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g----~~~~i~~~ 117 (242)
T 3r3h_A 44 VAPEQAQFMQMLIR--LTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAK----QEHKIKLR 117 (242)
T ss_dssp CCHHHHHHHHHHHH--HHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTT----CTTTEEEE
T ss_pred cCHHHHHHHHHHHh--hcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC----CCCcEEEE
Confidence 44544444444443 4567799999999999999999987447899999999999999999987743 13589999
Q ss_pred EecCCCCCCC------CCCeeEEEECCCccc---hhHHHHHhcCCCcEEEEEe
Q psy10572 112 VWNGKHGYER------EAPYDIIHVSPSYFT---IPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 112 ~~d~~~~~~~------~~~~D~v~~~~~~~~---~~~~~~~~Lk~gG~l~~~~ 155 (204)
.+|+.+.... .++||+|+++..... +++.+.++|+|||++++.-
T Consensus 118 ~gda~~~l~~~~~~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~d~ 170 (242)
T 3r3h_A 118 LGPALDTLHSLLNEGGEHQFDFIFIDADKTNYLNYYELALKLVTPKGLIAIDN 170 (242)
T ss_dssp ESCHHHHHHHHHHHHCSSCEEEEEEESCGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred EcCHHHHHHHHhhccCCCCEeEEEEcCChHHhHHHHHHHHHhcCCCeEEEEEC
Confidence 9997643221 368999999887654 4678899999999999843
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.59 E-value=3.4e-15 Score=111.94 Aligned_cols=119 Identities=15% Similarity=0.230 Sum_probs=89.4
Q ss_pred CChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEE
Q psy10572 32 SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV 111 (204)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 111 (204)
..+.....+...+. ..++.+|||+|||+|..+..+++.+++.++++++|+++.+++.+++++...+ ..++++++
T Consensus 48 ~~~~~~~~l~~l~~--~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~----~~~~v~~~ 121 (225)
T 3tr6_A 48 TAPEQAQLLALLVK--LMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAG----LSDKIGLR 121 (225)
T ss_dssp CCHHHHHHHHHHHH--HHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTT----CTTTEEEE
T ss_pred cCHHHHHHHHHHHH--hhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCC----CCCceEEE
Confidence 34444433333333 4567899999999999999999987446799999999999999999987643 12469999
Q ss_pred EecCCCCCC---C---CCCeeEEEECCCccc---hhHHHHHhcCCCcEEEEEec
Q psy10572 112 VWNGKHGYE---R---EAPYDIIHVSPSYFT---IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 112 ~~d~~~~~~---~---~~~~D~v~~~~~~~~---~~~~~~~~Lk~gG~l~~~~~ 156 (204)
.+|..+... . .++||+|+++..... +++.+.++|+|||++++.-.
T Consensus 122 ~~d~~~~~~~~~~~~~~~~fD~v~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~~ 175 (225)
T 3tr6_A 122 LSPAKDTLAELIHAGQAWQYDLIYIDADKANTDLYYEESLKLLREGGLIAVDNV 175 (225)
T ss_dssp ESCHHHHHHHHHTTTCTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred eCCHHHHHHHhhhccCCCCccEEEECCCHHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 999753211 1 168999999887543 56888999999999998543
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.3e-14 Score=124.69 Aligned_cols=141 Identities=15% Similarity=0.051 Sum_probs=101.0
Q ss_pred CCccccccccccCCcccCChH---HHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHH
Q psy10572 15 NEPYRIKSRQIGYGADISSPH---IHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESS 91 (204)
Q Consensus 15 ~~~y~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a 91 (204)
...|.+...+......+..+. ....+.+.+. ..++.+|||+|||+|.++..+++..++..+|+|+|+++.+++.|
T Consensus 685 ~lay~dea~p~me~gtFsPPL~eqRle~LLelL~--~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~A 762 (950)
T 3htx_A 685 LLGVKGPSEERMEAAFFKPPLSKQRVEYALKHIR--ESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARA 762 (950)
T ss_dssp EEEEECSCCCCCCCCCSSSCHHHHHHHHHHHHHH--HSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHH
T ss_pred hhccccchhhHHhhCcCCchHHHHHHHHHHHHhc--ccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHH
Confidence 334444444433333333333 3344455554 35788999999999999999998763446999999999999999
Q ss_pred HHHhhhcCc-cccCccceEEEEecCCCCCCCCCCeeEEEECCCccchh--------HHHHHhcCCCcEEEEEecCC
Q psy10572 92 IKNIDKGNS-ELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIP--------QKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 92 ~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~--------~~~~~~Lk~gG~l~~~~~~~ 158 (204)
++++..... ......+++++++|+.......++||+|++...++++. +.+.++|||| .+++++++.
T Consensus 763 ReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~ 837 (950)
T 3htx_A 763 AKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNY 837 (950)
T ss_dssp HHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBG
T ss_pred HHHhhhccchhhcCCCceEEEECchHhCCcccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCc
Confidence 987654210 00124589999999988777778999999998887743 5678999999 888877654
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.59 E-value=1.2e-14 Score=110.61 Aligned_cols=109 Identities=17% Similarity=0.112 Sum_probs=85.7
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccc-c--CccceEEEEecCCCC---CCC
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSEL-L--DQGRVQFVVWNGKHG---YER 121 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-~--~~~~~~~~~~d~~~~---~~~ 121 (204)
+.++.+|||+|||+|.++..+++.. +..+++|+|+++.+++.+++++....... . +..++.++.+|+... .++
T Consensus 47 ~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~ 125 (246)
T 2vdv_E 47 MTKKVTIADIGCGFGGLMIDLSPAF-PEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFE 125 (246)
T ss_dssp BSCCEEEEEETCTTSHHHHHHHHHS-TTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSC
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHhC-CCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcc
Confidence 3577899999999999999999987 66799999999999999999876531000 0 235899999998752 245
Q ss_pred CCCeeEEEECCCcc--------------chhHHHHHhcCCCcEEEEEecC
Q psy10572 122 EAPYDIIHVSPSYF--------------TIPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 122 ~~~~D~v~~~~~~~--------------~~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
.+++|.|++..+.. .++..+.++|+|||.|++.+..
T Consensus 126 ~~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~ 175 (246)
T 2vdv_E 126 KGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDV 175 (246)
T ss_dssp TTCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEESC
T ss_pred ccccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEecc
Confidence 67899998765544 4678899999999999996543
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.8e-14 Score=111.78 Aligned_cols=106 Identities=17% Similarity=0.259 Sum_probs=86.6
Q ss_pred HHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC
Q psy10572 39 QMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG 118 (204)
Q Consensus 39 ~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~ 118 (204)
.+++.+. ..++.+|||+|||+|.++..+++.. .+++|+|+++.+++.+++++...+ . +++++.+|+...
T Consensus 111 ~~~~~~~--~~~~~~vLD~GcG~G~~~~~l~~~g---~~v~~vD~s~~~~~~a~~~~~~~~-----~-~~~~~~~d~~~~ 179 (286)
T 3m70_A 111 DVVDAAK--IISPCKVLDLGCGQGRNSLYLSLLG---YDVTSWDHNENSIAFLNETKEKEN-----L-NISTALYDINAA 179 (286)
T ss_dssp HHHHHHH--HSCSCEEEEESCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTT-----C-CEEEEECCGGGC
T ss_pred HHHHHhh--ccCCCcEEEECCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHHcC-----C-ceEEEEeccccc
Confidence 4444454 3478899999999999999999874 399999999999999999987743 2 799999998765
Q ss_pred CCCCCCeeEEEECCCccc--------hhHHHHHhcCCCcEEEEEec
Q psy10572 119 YEREAPYDIIHVSPSYFT--------IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 119 ~~~~~~~D~v~~~~~~~~--------~~~~~~~~Lk~gG~l~~~~~ 156 (204)
.. .++||+|+++.++++ +++.+.++|+|||.+++.+.
T Consensus 180 ~~-~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 224 (286)
T 3m70_A 180 NI-QENYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAA 224 (286)
T ss_dssp CC-CSCEEEEEECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cc-cCCccEEEEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 54 578999999987754 45788899999999887654
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.2e-14 Score=109.66 Aligned_cols=102 Identities=18% Similarity=0.176 Sum_probs=82.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEE
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDII 128 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 128 (204)
.++.+|||+|||+|.++..+++ +..+++|+|+++.+++.++++....+ ...+++++.+|+.... +..+||+|
T Consensus 65 ~~~~~vLDiGcG~G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~~-~~~~fD~v 136 (235)
T 3lcc_A 65 LPLGRALVPGCGGGHDVVAMAS---PERFVVGLDISESALAKANETYGSSP----KAEYFSFVKEDVFTWR-PTELFDLI 136 (235)
T ss_dssp SCCEEEEEETCTTCHHHHHHCB---TTEEEEEECSCHHHHHHHHHHHTTSG----GGGGEEEECCCTTTCC-CSSCEEEE
T ss_pred CCCCCEEEeCCCCCHHHHHHHh---CCCeEEEEECCHHHHHHHHHHhhccC----CCcceEEEECchhcCC-CCCCeeEE
Confidence 3446999999999999998876 34589999999999999999886522 1357999999987754 44689999
Q ss_pred EECCCccc--------hhHHHHHhcCCCcEEEEEecCC
Q psy10572 129 HVSPSYFT--------IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 129 ~~~~~~~~--------~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
++...+++ +++.+.++|+|||.+++.....
T Consensus 137 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 174 (235)
T 3lcc_A 137 FDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPI 174 (235)
T ss_dssp EEESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred EEChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEecc
Confidence 99877654 4578889999999999877654
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.59 E-value=3.9e-15 Score=112.91 Aligned_cols=104 Identities=16% Similarity=0.134 Sum_probs=83.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCC---CCCe
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYER---EAPY 125 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~ 125 (204)
.++.+|||+|||+|..+..++... +..+++++|+++.+++.+++++...+ .++++++++|+...... .++|
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~~~~f 142 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICF-PHLHVTIVDSLNKRITFLEKLSEALQ-----LENTTFCHDRAETFGQRKDVRESY 142 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHT-----CSSEEEEESCHHHHTTCTTTTTCE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcC-----CCCEEEEeccHHHhcccccccCCc
Confidence 467899999999999999999865 66799999999999999999987743 35799999987654322 4689
Q ss_pred eEEEECCCc--cchhHHHHHhcCCCcEEEEEecCC
Q psy10572 126 DIIHVSPSY--FTIPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 126 D~v~~~~~~--~~~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
|+|++.... ..+++.+.++|+|||++++.....
T Consensus 143 D~V~~~~~~~~~~~l~~~~~~LkpgG~l~~~~g~~ 177 (240)
T 1xdz_A 143 DIVTARAVARLSVLSELCLPLVKKNGLFVALKAAS 177 (240)
T ss_dssp EEEEEECCSCHHHHHHHHGGGEEEEEEEEEEECC-
T ss_pred cEEEEeccCCHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 999987643 236688889999999999865443
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.3e-14 Score=109.71 Aligned_cols=100 Identities=16% Similarity=0.222 Sum_probs=83.6
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
..++.+|||+|||+|.++..+++.. . .+++|+|+++.+++.++++... .++.++.+|+.....+.++||+
T Consensus 41 ~~~~~~vLdiG~G~G~~~~~l~~~~-~-~~v~~vD~s~~~~~~a~~~~~~--------~~~~~~~~d~~~~~~~~~~fD~ 110 (243)
T 3bkw_A 41 EVGGLRIVDLGCGFGWFCRWAHEHG-A-SYVLGLDLSEKMLARARAAGPD--------TGITYERADLDKLHLPQDSFDL 110 (243)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHTT-C-SEEEEEESCHHHHHHHHHTSCS--------SSEEEEECCGGGCCCCTTCEEE
T ss_pred ccCCCEEEEEcCcCCHHHHHHHHCC-C-CeEEEEcCCHHHHHHHHHhccc--------CCceEEEcChhhccCCCCCceE
Confidence 4578899999999999999998863 2 3899999999999999987543 3689999998776556678999
Q ss_pred EEECCCccc------hhHHHHHhcCCCcEEEEEecC
Q psy10572 128 IHVSPSYFT------IPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 128 v~~~~~~~~------~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
|++...+++ +++.+.++|+|||.+++.+++
T Consensus 111 v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 146 (243)
T 3bkw_A 111 AYSSLALHYVEDVARLFRTVHQALSPGGHFVFSTEH 146 (243)
T ss_dssp EEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EEEeccccccchHHHHHHHHHHhcCcCcEEEEEeCC
Confidence 999887765 457889999999999998764
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.59 E-value=5.9e-15 Score=108.84 Aligned_cols=98 Identities=21% Similarity=0.175 Sum_probs=83.1
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEE
Q psy10572 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIH 129 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 129 (204)
.+.+|||+|||+|.++..+++.. .+++|+|+++.+++.++++. +++.++.+|+.....+.++||+|+
T Consensus 41 ~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~----------~~~~~~~~d~~~~~~~~~~fD~v~ 107 (203)
T 3h2b_A 41 VDGVILDVGSGTGRWTGHLASLG---HQIEGLEPATRLVELARQTH----------PSVTFHHGTITDLSDSPKRWAGLL 107 (203)
T ss_dssp CCSCEEEETCTTCHHHHHHHHTT---CCEEEECCCHHHHHHHHHHC----------TTSEEECCCGGGGGGSCCCEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHhC----------CCCeEEeCcccccccCCCCeEEEE
Confidence 37899999999999999998863 38999999999999998862 468899999877656668999999
Q ss_pred ECCCccc--------hhHHHHHhcCCCcEEEEEecCCCC
Q psy10572 130 VSPSYFT--------IPQKLLDQLVPGGRMVMPVGEPFK 160 (204)
Q Consensus 130 ~~~~~~~--------~~~~~~~~Lk~gG~l~~~~~~~~~ 160 (204)
++..+++ +++.+.++|+|||.+++.++....
T Consensus 108 ~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 146 (203)
T 3h2b_A 108 AWYSLIHMGPGELPDALVALRMAVEDGGGLLMSFFSGPS 146 (203)
T ss_dssp EESSSTTCCTTTHHHHHHHHHHTEEEEEEEEEEEECCSS
T ss_pred ehhhHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEccCCc
Confidence 9877655 457888999999999999877654
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.9e-14 Score=110.66 Aligned_cols=110 Identities=22% Similarity=0.337 Sum_probs=88.6
Q ss_pred HHHHHHHhccC-CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCC
Q psy10572 38 AQMLELLKDKI-KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGK 116 (204)
Q Consensus 38 ~~~~~~l~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~ 116 (204)
..+.+.+...+ .++.+|||+|||+|.++..+++.. +..+++|+|+++.+++.|+++. .++.+..+|..
T Consensus 72 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~----------~~~~~~~~d~~ 140 (269)
T 1p91_A 72 DAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADAL-PEITTFGLDVSKVAIKAAAKRY----------PQVTFCVASSH 140 (269)
T ss_dssp HHHHHHHHHHSCTTCCEEEEETCTTSTTHHHHHHTC-TTSEEEEEESCHHHHHHHHHHC----------TTSEEEECCTT
T ss_pred HHHHHHHHHhcCCCCCEEEEECCCCCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHhC----------CCcEEEEcchh
Confidence 33444444333 578899999999999999999976 4569999999999999998763 35788999977
Q ss_pred CCCCCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEEecCCC
Q psy10572 117 HGYEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 117 ~~~~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
....+.++||+|++... ...++++.++|+|||.+++.++...
T Consensus 141 ~~~~~~~~fD~v~~~~~-~~~l~~~~~~L~pgG~l~~~~~~~~ 182 (269)
T 1p91_A 141 RLPFSDTSMDAIIRIYA-PCKAEELARVVKPGGWVITATPGPR 182 (269)
T ss_dssp SCSBCTTCEEEEEEESC-CCCHHHHHHHEEEEEEEEEEEECTT
T ss_pred hCCCCCCceeEEEEeCC-hhhHHHHHHhcCCCcEEEEEEcCHH
Confidence 66566678999998765 4567999999999999999887654
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=9.7e-15 Score=117.28 Aligned_cols=116 Identities=22% Similarity=0.174 Sum_probs=89.1
Q ss_pred hHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhh-------hcCccccCcc
Q psy10572 34 PHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNID-------KGNSELLDQG 106 (204)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~-------~~~~~~~~~~ 106 (204)
+.....+++.+. +.++.+|||+|||+|.++..++... +..+++|||+++.+++.|+++.+ ..+ +...
T Consensus 159 ~~~i~~il~~l~--l~~gd~VLDLGCGtG~l~l~lA~~~-g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~G---l~~~ 232 (438)
T 3uwp_A 159 FDLVAQMIDEIK--MTDDDLFVDLGSGVGQVVLQVAAAT-NCKHHYGVEKADIPAKYAETMDREFRKWMKWYG---KKHA 232 (438)
T ss_dssp HHHHHHHHHHHC--CCTTCEEEEESCTTSHHHHHHHHHC-CCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHT---BCCC
T ss_pred HHHHHHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhC---CCCC
Confidence 455666677665 7899999999999999999999876 34469999999999999987643 111 1125
Q ss_pred ceEEEEecCCCCCCCC--CCeeEEEECCCccc-----hhHHHHHhcCCCcEEEEEe
Q psy10572 107 RVQFVVWNGKHGYERE--APYDIIHVSPSYFT-----IPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 107 ~~~~~~~d~~~~~~~~--~~~D~v~~~~~~~~-----~~~~~~~~Lk~gG~l~~~~ 155 (204)
+++++++|+....+.. ..+|+|+++..+.. .+.++.+.|||||+|++.-
T Consensus 233 rVefi~GD~~~lp~~d~~~~aDVVf~Nn~~F~pdl~~aL~Ei~RvLKPGGrIVssE 288 (438)
T 3uwp_A 233 EYTLERGDFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSK 288 (438)
T ss_dssp EEEEEECCTTSHHHHHHHHTCSEEEECCTTCCHHHHHHHHHHHTTSCTTCEEEESS
T ss_pred CeEEEECcccCCccccccCCccEEEEcccccCchHHHHHHHHHHcCCCCcEEEEee
Confidence 8999999987654322 36999999877543 3467889999999999853
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.59 E-value=3.1e-14 Score=116.01 Aligned_cols=122 Identities=19% Similarity=0.254 Sum_probs=91.4
Q ss_pred ccCCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHH-------HHHhhh
Q psy10572 25 IGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESS-------IKNIDK 97 (204)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a-------~~~~~~ 97 (204)
.++|... +.+...+++.+. +.++.+|||+|||+|.++..+++.. +..+++|+|+++.+++.| ++++..
T Consensus 221 ~~yGet~--p~~v~~ml~~l~--l~~g~~VLDLGCGsG~la~~LA~~~-g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~ 295 (433)
T 1u2z_A 221 YVYGELL--PNFLSDVYQQCQ--LKKGDTFMDLGSGVGNCVVQAALEC-GCALSFGCEIMDDASDLTILQYEELKKRCKL 295 (433)
T ss_dssp GCCCCBC--HHHHHHHHHHTT--CCTTCEEEEESCTTSHHHHHHHHHH-CCSEEEEEECCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccc--HHHHHHHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHhHHHHHHHHHH
Confidence 3444443 667777777776 7888999999999999999999987 445899999999999998 777665
Q ss_pred cCccccCccceEEEEecCCCCC--C--CCCCeeEEEECCCcc-----chhHHHHHhcCCCcEEEEE
Q psy10572 98 GNSELLDQGRVQFVVWNGKHGY--E--REAPYDIIHVSPSYF-----TIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 98 ~~~~~~~~~~~~~~~~d~~~~~--~--~~~~~D~v~~~~~~~-----~~~~~~~~~Lk~gG~l~~~ 154 (204)
.+ +...+++++.+|..... + ..++||+|+++.... ..+.++.+.|||||++++.
T Consensus 296 ~G---l~~~nV~~i~gD~~~~~~~~~~~~~~FDvIvvn~~l~~~d~~~~L~el~r~LKpGG~lVi~ 358 (433)
T 1u2z_A 296 YG---MRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISL 358 (433)
T ss_dssp TT---BCCCCEEEEESSCSTTCHHHHHHGGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred cC---CCCCceEEEEcCccccccccccccCCCCEEEEeCccccccHHHHHHHHHHhCCCCeEEEEe
Confidence 32 11358999987644221 1 136799999975442 1346889999999999986
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=3.7e-14 Score=110.39 Aligned_cols=105 Identities=21% Similarity=0.262 Sum_probs=86.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCC-CCCCee
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE-REAPYD 126 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D 126 (204)
+.++.+|||+|||+|.++..+++.. ..+++|+|+++.+++.|++++...+ ...++.++.+|+..... +.++||
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~~~~~~~~fD 135 (298)
T 1ri5_A 62 TKRGDSVLDLGCGKGGDLLKYERAG--IGEYYGVDIAEVSINDARVRARNMK----RRFKVFFRAQDSYGRHMDLGKEFD 135 (298)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHHT--CSEEEEEESCHHHHHHHHHHHHTSC----CSSEEEEEESCTTTSCCCCSSCEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHhcC----CCccEEEEECCccccccCCCCCcC
Confidence 5788999999999999999887763 3599999999999999999987632 12468999999876554 467899
Q ss_pred EEEECCCccc----------hhHHHHHhcCCCcEEEEEecCC
Q psy10572 127 IIHVSPSYFT----------IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 127 ~v~~~~~~~~----------~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
+|++...+++ +++.+.++|+|||.+++.+++.
T Consensus 136 ~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 177 (298)
T 1ri5_A 136 VISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSR 177 (298)
T ss_dssp EEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred EEEECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence 9999877643 3478889999999999988764
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.58 E-value=5.7e-15 Score=111.89 Aligned_cols=121 Identities=18% Similarity=0.235 Sum_probs=94.4
Q ss_pred cccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccce
Q psy10572 29 ADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRV 108 (204)
Q Consensus 29 ~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~ 108 (204)
.....+.....+...+. ..++.+|||+|||+|..+..+++..++.++++++|+++.+++.|++++...+ ...++
T Consensus 41 ~~~~~~~~~~~l~~l~~--~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g----~~~~v 114 (239)
T 2hnk_A 41 NMQISPEEGQFLNILTK--ISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENG----LENKI 114 (239)
T ss_dssp CCSCCHHHHHHHHHHHH--HHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTT----CGGGE
T ss_pred ccccCHHHHHHHHHHHH--hhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC----CCCCE
Confidence 34556666666666555 5678899999999999999999987436799999999999999999987643 12359
Q ss_pred EEEEecCCCCC---------------CC-C-CCeeEEEECCCccc---hhHHHHHhcCCCcEEEEEe
Q psy10572 109 QFVVWNGKHGY---------------ER-E-APYDIIHVSPSYFT---IPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 109 ~~~~~d~~~~~---------------~~-~-~~~D~v~~~~~~~~---~~~~~~~~Lk~gG~l~~~~ 155 (204)
.++.+|..... ++ . ++||+|+++..... +++.+.++|+|||++++..
T Consensus 115 ~~~~~d~~~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~ 181 (239)
T 2hnk_A 115 FLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKENYPNYYPLILKLLKPGGLLIADN 181 (239)
T ss_dssp EEEESCHHHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEECCHHHHHHHHHhhcccccccccccCCCCCcCEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEEc
Confidence 99998865321 11 1 68999999987664 4588999999999999965
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.6e-14 Score=108.90 Aligned_cols=103 Identities=26% Similarity=0.373 Sum_probs=83.5
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC---CCCCC
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY---EREAP 124 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~ 124 (204)
+.++.+|||+|||+|.++..+++..++.++++|+|+++.+++.+.++.... .+++++.+|+.... ...++
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~-------~~v~~~~~d~~~~~~~~~~~~~ 147 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR-------TNIIPVIEDARHPHKYRMLIAM 147 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC-------TTEEEECSCTTCGGGGGGGCCC
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc-------CCeEEEEcccCChhhhcccCCc
Confidence 467889999999999999999998755579999999999888887776652 47999999987532 23468
Q ss_pred eeEEEECCCccc----hhHHHHHhcCCCcEEEEEecC
Q psy10572 125 YDIIHVSPSYFT----IPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 125 ~D~v~~~~~~~~----~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
||+|+++.+..+ ++.++.+.|+|||++++.+..
T Consensus 148 ~D~V~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~~~~ 184 (233)
T 2ipx_A 148 VDVIFADVAQPDQTRIVALNAHTFLRNGGHFVISIKA 184 (233)
T ss_dssp EEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred EEEEEEcCCCccHHHHHHHHHHHHcCCCeEEEEEEcc
Confidence 999999877543 256788999999999997764
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.7e-14 Score=109.14 Aligned_cols=114 Identities=15% Similarity=0.146 Sum_probs=90.2
Q ss_pred HHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEec
Q psy10572 35 HIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWN 114 (204)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d 114 (204)
.....+.+.+.....++.+|||+|||+|.++..+++.. .+++|+|+++.+++.++++....+ .++.++.+|
T Consensus 22 ~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~---~~~~~~D~s~~~~~~a~~~~~~~~------~~~~~~~~d 92 (246)
T 1y8c_A 22 KWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKF---KNTWAVDLSQEMLSEAENKFRSQG------LKPRLACQD 92 (246)
T ss_dssp HHHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGS---SEEEEECSCHHHHHHHHHHHHHTT------CCCEEECCC
T ss_pred HHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHCC---CcEEEEECCHHHHHHHHHHHhhcC------CCeEEEecc
Confidence 34555566665333477899999999999999998864 389999999999999999886532 278999999
Q ss_pred CCCCCCCCCCeeEEEECC-Cccch---------hHHHHHhcCCCcEEEEEecCC
Q psy10572 115 GKHGYEREAPYDIIHVSP-SYFTI---------PQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 115 ~~~~~~~~~~~D~v~~~~-~~~~~---------~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
+.....+ ++||+|+++. .++++ ++.+.++|+|||.+++.+++.
T Consensus 93 ~~~~~~~-~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 145 (246)
T 1y8c_A 93 ISNLNIN-RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSY 145 (246)
T ss_dssp GGGCCCS-CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred cccCCcc-CCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEecCH
Confidence 8765554 7899999987 66554 367889999999999987654
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.58 E-value=2.8e-14 Score=107.46 Aligned_cols=99 Identities=17% Similarity=0.222 Sum_probs=82.0
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCC----CCCCCC
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKH----GYEREA 123 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~----~~~~~~ 123 (204)
+.++.+|||+|||+|..+..+++.. +.++++|+|+++.+++.+++++.. .+++.++.+|+.. .... +
T Consensus 72 ~~~~~~VLDlGcG~G~~~~~la~~~-~~~~v~gvD~s~~~~~~a~~~~~~-------~~~v~~~~~d~~~~~~~~~~~-~ 142 (230)
T 1fbn_A 72 IKRDSKILYLGASAGTTPSHVADIA-DKGIVYAIEYAPRIMRELLDACAE-------RENIIPILGDANKPQEYANIV-E 142 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHT-TTSEEEEEESCHHHHHHHHHHTTT-------CTTEEEEECCTTCGGGGTTTS-C
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHc-CCcEEEEEECCHHHHHHHHHHhhc-------CCCeEEEECCCCCcccccccC-c
Confidence 4678899999999999999999987 356999999999999999988755 2589999999876 4444 6
Q ss_pred CeeEEEECCCcc----chhHHHHHhcCCCcEEEEEe
Q psy10572 124 PYDIIHVSPSYF----TIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 124 ~~D~v~~~~~~~----~~~~~~~~~Lk~gG~l~~~~ 155 (204)
+||+|+...... .+++.+.+.|+|||++++.+
T Consensus 143 ~~D~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 178 (230)
T 1fbn_A 143 KVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAI 178 (230)
T ss_dssp CEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cEEEEEEecCChhHHHHHHHHHHHhCCCCcEEEEEE
Confidence 899999765443 24788999999999999964
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.4e-14 Score=110.81 Aligned_cols=105 Identities=27% Similarity=0.418 Sum_probs=86.4
Q ss_pred HHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC
Q psy10572 39 QMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG 118 (204)
Q Consensus 39 ~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~ 118 (204)
.+++.+. +.++.+|||+|||+|.++..+++ +.++++|+|+|+.+++.++++. +++.+..+|+...
T Consensus 48 ~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~----------~~~~~~~~d~~~~ 112 (279)
T 3ccf_A 48 DLLQLLN--PQPGEFILDLGCGTGQLTEKIAQ---SGAEVLGTDNAATMIEKARQNY----------PHLHFDVADARNF 112 (279)
T ss_dssp HHHHHHC--CCTTCEEEEETCTTSHHHHHHHH---TTCEEEEEESCHHHHHHHHHHC----------TTSCEEECCTTTC
T ss_pred HHHHHhC--CCCCCEEEEecCCCCHHHHHHHh---CCCeEEEEECCHHHHHHHHhhC----------CCCEEEECChhhC
Confidence 4455554 56788999999999999999988 3459999999999999998764 3678899998765
Q ss_pred CCCCCCeeEEEECCCccc------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 119 YEREAPYDIIHVSPSYFT------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 119 ~~~~~~~D~v~~~~~~~~------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
.. .++||+|+++..+++ +++++.++|+|||++++.++...
T Consensus 113 ~~-~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~ 158 (279)
T 3ccf_A 113 RV-DKPLDAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFGGKG 158 (279)
T ss_dssp CC-SSCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred Cc-CCCcCEEEEcchhhhCcCHHHHHHHHHHhcCCCcEEEEEecCCc
Confidence 44 478999999988765 45889999999999999887653
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.58 E-value=1e-14 Score=110.44 Aligned_cols=103 Identities=16% Similarity=0.120 Sum_probs=84.3
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEE
Q psy10572 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIH 129 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 129 (204)
++.+|||+|||+|.++..+++.. ..+++++|+++.+++.+++++...+ ..++.++.+|+.....+.++||+|+
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~fD~v~ 151 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGEEG-----KRVRNYFCCGLQDFTPEPDSYDVIW 151 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGGGG-----GGEEEEEECCGGGCCCCSSCEEEEE
T ss_pred CCCEEEEECCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHhhhcC-----CceEEEEEcChhhcCCCCCCEEEEE
Confidence 57899999999999999888764 3489999999999999999876531 2468999999776656667899999
Q ss_pred ECCCccc--------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 130 VSPSYFT--------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 130 ~~~~~~~--------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
++..+++ +++++.++|+|||++++..+...
T Consensus 152 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 189 (241)
T 2ex4_A 152 IQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQ 189 (241)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBS
T ss_pred EcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEccCC
Confidence 9977654 45788899999999999775443
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=3.7e-14 Score=111.73 Aligned_cols=103 Identities=17% Similarity=0.199 Sum_probs=84.7
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
+.++.+|||+|||+|.++..+++..+ ++++|+|+++.+++.+++++...+ ..++++++.+|+.... ++||+
T Consensus 88 ~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~~---~~fD~ 158 (318)
T 2fk8_A 88 LKPGMTLLDIGCGWGTTMRRAVERFD--VNVIGLTLSKNQHARCEQVLASID----TNRSRQVLLQGWEDFA---EPVDR 158 (318)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHTSC----CSSCEEEEESCGGGCC---CCCSE
T ss_pred CCCcCEEEEEcccchHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhcC----CCCceEEEECChHHCC---CCcCE
Confidence 46788999999999999999998852 499999999999999999987643 1246999999976542 68999
Q ss_pred EEECCCccc--------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 128 IHVSPSYFT--------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 128 v~~~~~~~~--------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
|++...+++ +++++.++|+|||.+++..+...
T Consensus 159 v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 198 (318)
T 2fk8_A 159 IVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSY 198 (318)
T ss_dssp EEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECC
T ss_pred EEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccC
Confidence 999877654 34788899999999999887654
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.9e-14 Score=119.14 Aligned_cols=124 Identities=15% Similarity=0.157 Sum_probs=94.8
Q ss_pred cccCChHHHHHHHHHHhccCC--CCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCcc
Q psy10572 29 ADISSPHIHAQMLELLKDKIK--PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQG 106 (204)
Q Consensus 29 ~~~~~~~~~~~~~~~l~~~~~--~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~ 106 (204)
..+.++.........+. +. ++.+|||+|||+|..+..++...++.+.|+++|+++.+++.+++++...+ ..
T Consensus 96 ~~~~Qd~~s~l~~~~L~--~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g-----~~ 168 (479)
T 2frx_A 96 LFYIQEASSMLPVAALF--ADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCG-----IS 168 (479)
T ss_dssp SEEECCHHHHHHHHHHT--TTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHT-----CC
T ss_pred EEEEECHHHHHHHHHhC--cccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-----CC
Confidence 33334434444445555 45 88999999999999999999987556799999999999999999998744 45
Q ss_pred ceEEEEecCCCCCC-CCCCeeEEEECCCcc----------------------------chhHHHHHhcCCCcEEEEEecC
Q psy10572 107 RVQFVVWNGKHGYE-REAPYDIIHVSPSYF----------------------------TIPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 107 ~~~~~~~d~~~~~~-~~~~~D~v~~~~~~~----------------------------~~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
++.++.+|+..... ..++||.|++++++. .+++.+.++|||||+|++++++
T Consensus 169 nv~~~~~D~~~~~~~~~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs 248 (479)
T 2frx_A 169 NVALTHFDGRVFGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCT 248 (479)
T ss_dssp SEEEECCCSTTHHHHSTTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred cEEEEeCCHHHhhhhccccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEeccc
Confidence 79999999765432 246799999986652 1346777999999999998876
Q ss_pred CC
Q psy10572 158 PF 159 (204)
Q Consensus 158 ~~ 159 (204)
..
T Consensus 249 ~~ 250 (479)
T 2frx_A 249 LN 250 (479)
T ss_dssp CS
T ss_pred CC
Confidence 54
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.3e-14 Score=108.51 Aligned_cols=117 Identities=17% Similarity=0.281 Sum_probs=89.3
Q ss_pred ChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEE
Q psy10572 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVV 112 (204)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 112 (204)
.+... .++..+.. ..++.+|||+|||+|..+..+++..++.++++++|+++.+++.|++++...+ ..++++++.
T Consensus 55 ~~~~~-~~l~~l~~-~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g----~~~~i~~~~ 128 (237)
T 3c3y_A 55 SPLAG-QLMSFVLK-LVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAG----VEHKINFIE 128 (237)
T ss_dssp CHHHH-HHHHHHHH-HTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTT----CGGGEEEEE
T ss_pred CHHHH-HHHHHHHH-hhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC----CCCcEEEEE
Confidence 34433 34444332 3567799999999999999999987446899999999999999999987643 134799999
Q ss_pred ecCCCCCC-------CCCCeeEEEECCCccc---hhHHHHHhcCCCcEEEEEe
Q psy10572 113 WNGKHGYE-------REAPYDIIHVSPSYFT---IPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 113 ~d~~~~~~-------~~~~~D~v~~~~~~~~---~~~~~~~~Lk~gG~l~~~~ 155 (204)
+|+.+... +.++||+|+++..... +++.+.++|+|||++++..
T Consensus 129 gda~~~l~~l~~~~~~~~~fD~I~~d~~~~~~~~~l~~~~~~L~pGG~lv~d~ 181 (237)
T 3c3y_A 129 SDAMLALDNLLQGQESEGSYDFGFVDADKPNYIKYHERLMKLVKVGGIVAYDN 181 (237)
T ss_dssp SCHHHHHHHHHHSTTCTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred cCHHHHHHHHHhccCCCCCcCEEEECCchHHHHHHHHHHHHhcCCCeEEEEec
Confidence 99764211 1468999999876543 5688899999999998854
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.4e-14 Score=109.59 Aligned_cols=111 Identities=14% Similarity=0.116 Sum_probs=81.1
Q ss_pred HHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEec
Q psy10572 35 HIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWN 114 (204)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d 114 (204)
.....+++.+. +.++.+|||+|||+|.++..+++.. .+|+|+|+|+.+++.|++++... .+.....+
T Consensus 32 ~~~~~il~~l~--l~~g~~VLDlGcGtG~~a~~La~~g---~~V~gvD~S~~ml~~Ar~~~~~~--------~v~~~~~~ 98 (261)
T 3iv6_A 32 SDRENDIFLEN--IVPGSTVAVIGASTRFLIEKALERG---ASVTVFDFSQRMCDDLAEALADR--------CVTIDLLD 98 (261)
T ss_dssp CHHHHHHHTTT--CCTTCEEEEECTTCHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHTSSS--------CCEEEECC
T ss_pred HHHHHHHHhcC--CCCcCEEEEEeCcchHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHhc--------cceeeeee
Confidence 34555666555 6788999999999999999999864 49999999999999999987541 12222222
Q ss_pred CCC--CCCCCCCeeEEEECCCccc--------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 115 GKH--GYEREAPYDIIHVSPSYFT--------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 115 ~~~--~~~~~~~~D~v~~~~~~~~--------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
... .....++||+|+++..+++ .+..+.++| |||++++++..+.
T Consensus 99 ~~~~~~~~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~g~ 152 (261)
T 3iv6_A 99 ITAEIPKELAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVKLGF 152 (261)
T ss_dssp TTSCCCGGGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEEBSC
T ss_pred cccccccccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEeccCc
Confidence 111 1111468999999988765 346777889 9999999887553
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.57 E-value=5e-14 Score=107.21 Aligned_cols=99 Identities=20% Similarity=0.250 Sum_probs=80.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEE
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDII 128 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 128 (204)
.++.+|||+|||+|.++..+++.. .+++|+|+|+.+++.++++....+ .++.++.+|+.....+ ++||+|
T Consensus 40 ~~~~~vLDlGcG~G~~~~~l~~~~---~~v~gvD~s~~~l~~a~~~~~~~~------~~v~~~~~d~~~~~~~-~~fD~v 109 (252)
T 1wzn_A 40 REVRRVLDLACGTGIPTLELAERG---YEVVGLDLHEEMLRVARRKAKERN------LKIEFLQGDVLEIAFK-NEFDAV 109 (252)
T ss_dssp SCCCEEEEETCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTT------CCCEEEESCGGGCCCC-SCEEEE
T ss_pred cCCCEEEEeCCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHhcC------CceEEEECChhhcccC-CCccEE
Confidence 567899999999999999998863 499999999999999999887632 3689999998765443 689999
Q ss_pred EECCCcc---------chhHHHHHhcCCCcEEEEEecC
Q psy10572 129 HVSPSYF---------TIPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 129 ~~~~~~~---------~~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
++..... .+++.+.++|+|||.+++.+++
T Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 147 (252)
T 1wzn_A 110 TMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPC 147 (252)
T ss_dssp EECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEeccc
Confidence 9864321 2457888999999999998765
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.9e-14 Score=106.81 Aligned_cols=102 Identities=15% Similarity=0.130 Sum_probs=81.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC-CCCCCCeeE
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG-YEREAPYDI 127 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~ 127 (204)
.++.+|||+|||+|..+..+++..++.++++++|+++.+++.|++++...+ ..++++++.+|.... ....+ ||+
T Consensus 55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~~~~~~~-fD~ 129 (210)
T 3c3p_A 55 KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNG----LIDRVELQVGDPLGIAAGQRD-IDI 129 (210)
T ss_dssp HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHS----GGGGEEEEESCHHHHHTTCCS-EEE
T ss_pred hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCC----CCceEEEEEecHHHHhccCCC-CCE
Confidence 466799999999999999999987336799999999999999999987643 124699999997543 12235 999
Q ss_pred EEECCCccc---hhHHHHHhcCCCcEEEEEe
Q psy10572 128 IHVSPSYFT---IPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 128 v~~~~~~~~---~~~~~~~~Lk~gG~l~~~~ 155 (204)
|+++..... +++.+.++|+|||++++..
T Consensus 130 v~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~ 160 (210)
T 3c3p_A 130 LFMDCDVFNGADVLERMNRCLAKNALLIAVN 160 (210)
T ss_dssp EEEETTTSCHHHHHHHHGGGEEEEEEEEEES
T ss_pred EEEcCChhhhHHHHHHHHHhcCCCeEEEEEC
Confidence 999865443 5688899999999999843
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=8.5e-15 Score=113.97 Aligned_cols=118 Identities=18% Similarity=0.156 Sum_probs=88.6
Q ss_pred hHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe
Q psy10572 34 PHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW 113 (204)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 113 (204)
......+...+. ..++.+|||+|||+|.++..+++.. .+++|+|+|+.+++.|+++....... ....++.+..+
T Consensus 43 ~~~~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~~~~~ 116 (293)
T 3thr_A 43 AEYKAWLLGLLR--QHGCHRVLDVACGTGVDSIMLVEEG---FSVTSVDASDKMLKYALKERWNRRKE-PAFDKWVIEEA 116 (293)
T ss_dssp HHHHHHHHHHHH--HTTCCEEEETTCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTTS-HHHHTCEEEEC
T ss_pred HHHHHHHHHHhc--ccCCCEEEEecCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHhhhhcccc-cccceeeEeec
Confidence 334455555554 4677899999999999999999874 39999999999999999876432100 11347888888
Q ss_pred cCCCCC---CCCCCeeEEEEC-CCccc-------------hhHHHHHhcCCCcEEEEEecC
Q psy10572 114 NGKHGY---EREAPYDIIHVS-PSYFT-------------IPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 114 d~~~~~---~~~~~~D~v~~~-~~~~~-------------~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
|+.... .+.++||+|++. ..+++ +++++.++|||||++++.+++
T Consensus 117 d~~~~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (293)
T 3thr_A 117 NWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN 177 (293)
T ss_dssp CGGGHHHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred ChhhCccccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 876544 456789999997 45433 457888999999999998754
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.56 E-value=3.5e-14 Score=108.78 Aligned_cols=106 Identities=18% Similarity=0.191 Sum_probs=83.2
Q ss_pred HHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC
Q psy10572 39 QMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG 118 (204)
Q Consensus 39 ~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~ 118 (204)
.+.+.+...+.++.+|||+|||+|.++..+++.. .+++|+|+|+.+++.++++.. .+ ++.+|+...
T Consensus 43 ~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~l~~a~~~~~---------~~--~~~~d~~~~ 108 (260)
T 2avn_A 43 LIGSFLEEYLKNPCRVLDLGGGTGKWSLFLQERG---FEVVLVDPSKEMLEVAREKGV---------KN--VVEAKAEDL 108 (260)
T ss_dssp HHHHHHHHHCCSCCEEEEETCTTCHHHHHHHTTT---CEEEEEESCHHHHHHHHHHTC---------SC--EEECCTTSC
T ss_pred HHHHHHHHhcCCCCeEEEeCCCcCHHHHHHHHcC---CeEEEEeCCHHHHHHHHhhcC---------CC--EEECcHHHC
Confidence 3444444444578899999999999999998863 499999999999999988743 12 778887766
Q ss_pred CCCCCCeeEEEECCCccc-------hhHHHHHhcCCCcEEEEEecCC
Q psy10572 119 YEREAPYDIIHVSPSYFT-------IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 119 ~~~~~~~D~v~~~~~~~~-------~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
..+.++||+|++.....+ +++++.++|+|||.+++.+++.
T Consensus 109 ~~~~~~fD~v~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 155 (260)
T 2avn_A 109 PFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNF 155 (260)
T ss_dssp CSCTTCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred CCCCCCEEEEEEcchhhhccccHHHHHHHHHHHcCCCeEEEEEeCCh
Confidence 666688999999765433 4578889999999999987654
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.56 E-value=9e-15 Score=105.67 Aligned_cols=108 Identities=14% Similarity=0.076 Sum_probs=85.2
Q ss_pred HHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCcc-ceEEEEecC
Q psy10572 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQG-RVQFVVWNG 115 (204)
Q Consensus 37 ~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~d~ 115 (204)
...+...+..++.+..+|||+|||+|.++..++... |.++|+++|+|+.+++.+++++...+ .. ++++ .|.
T Consensus 36 ld~fY~~~~~~l~~~~~VLDlGCG~GplAl~l~~~~-p~a~~~A~Di~~~~leiar~~~~~~g-----~~~~v~~--~d~ 107 (200)
T 3fzg_A 36 LNDFYTYVFGNIKHVSSILDFGCGFNPLALYQWNEN-EKIIYHAYDIDRAEIAFLSSIIGKLK-----TTIKYRF--LNK 107 (200)
T ss_dssp HHHHHHHHHHHSCCCSEEEEETCTTHHHHHHHHCSS-CCCEEEEECSCHHHHHHHHHHHHHSC-----CSSEEEE--ECC
T ss_pred HHHHHHHHHhhcCCCCeEEEecCCCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcC-----CCccEEE--ecc
Confidence 344455555556788899999999999999998877 67799999999999999999998744 23 4555 565
Q ss_pred CCCCCCCCCeeEEEECCCccchh------HHHHHhcCCCcEEEE
Q psy10572 116 KHGYEREAPYDIIHVSPSYFTIP------QKLLDQLVPGGRMVM 153 (204)
Q Consensus 116 ~~~~~~~~~~D~v~~~~~~~~~~------~~~~~~Lk~gG~l~~ 153 (204)
... .+.++||+|++...++.+. ..+.+.|+|||.++-
T Consensus 108 ~~~-~~~~~~DvVLa~k~LHlL~~~~~al~~v~~~L~pggvfIS 150 (200)
T 3fzg_A 108 ESD-VYKGTYDVVFLLKMLPVLKQQDVNILDFLQLFHTQNFVIS 150 (200)
T ss_dssp HHH-HTTSEEEEEEEETCHHHHHHTTCCHHHHHHTCEEEEEEEE
T ss_pred ccc-CCCCCcChhhHhhHHHhhhhhHHHHHHHHHHhCCCCEEEE
Confidence 444 3457899999999887753 478899999998865
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.3e-14 Score=113.32 Aligned_cols=117 Identities=13% Similarity=0.163 Sum_probs=88.6
Q ss_pred hHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe
Q psy10572 34 PHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW 113 (204)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 113 (204)
......+++.+. .++.+|||+|||+|.++..+++.. .+++|+|+++.+++.|++++...+.. ...+++++.+
T Consensus 69 ~~~~~~~~~~~~---~~~~~vLDlGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~--~~~~v~~~~~ 140 (299)
T 3g2m_A 69 TSEAREFATRTG---PVSGPVLELAAGMGRLTFPFLDLG---WEVTALELSTSVLAAFRKRLAEAPAD--VRDRCTLVQG 140 (299)
T ss_dssp HHHHHHHHHHHC---CCCSCEEEETCTTTTTHHHHHTTT---CCEEEEESCHHHHHHHHHHHHTSCHH--HHTTEEEEEC
T ss_pred cHHHHHHHHhhC---CCCCcEEEEeccCCHHHHHHHHcC---CeEEEEECCHHHHHHHHHHHhhcccc--cccceEEEeC
Confidence 344445555553 344599999999999999999863 48999999999999999998763200 0147999999
Q ss_pred cCCCCCCCCCCeeEEEECCC-cc--------chhHHHHHhcCCCcEEEEEecCCC
Q psy10572 114 NGKHGYEREAPYDIIHVSPS-YF--------TIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 114 d~~~~~~~~~~~D~v~~~~~-~~--------~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
|+..... .++||+|++... ++ .+++++.++|+|||+|++.+++..
T Consensus 141 d~~~~~~-~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 194 (299)
T 3g2m_A 141 DMSAFAL-DKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSE 194 (299)
T ss_dssp BTTBCCC-SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCH
T ss_pred chhcCCc-CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCc
Confidence 9887554 578999986522 22 245788999999999999988765
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.56 E-value=4.4e-14 Score=107.67 Aligned_cols=114 Identities=14% Similarity=0.130 Sum_probs=84.0
Q ss_pred HHHHHHHhccC--CCCCEEEEEcCCCcHHHHHHHHH--hCCCceEEEEEcCHHHHHHHHHHhhhc---CccccCccc---
Q psy10572 38 AQMLELLKDKI--KPGARILDIGSGSGYLTACLAYM--AGPEGRVYGVEHVMELAESSIKNIDKG---NSELLDQGR--- 107 (204)
Q Consensus 38 ~~~~~~l~~~~--~~~~~vLdiG~G~G~~~~~l~~~--~~~~~~v~~vD~~~~~~~~a~~~~~~~---~~~~~~~~~--- 107 (204)
..++..+...+ .++.+|||+|||+|.++..+++. . +..+++|+|+|+.+++.|+.++... +. ..+
T Consensus 37 ~~l~~~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~-~~~~v~gvDis~~~l~~A~~~~~~~~~~~~----~~~~~~ 111 (250)
T 1o9g_A 37 TEIFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRR-SLRQVIASDVDPAPLELAAKNLALLSPAGL----TARELE 111 (250)
T ss_dssp HHHHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGG-GEEEEEEEESCHHHHHHHHHHHHTTSHHHH----HHHHHH
T ss_pred HHHHHHHHHhcccCCCCeEEECCCCCCHHHHHHHHHhcc-CCCeEEEEECCHHHHHHHHHHHHHhhhccc----cccchh
Confidence 34544444333 35679999999999999999987 4 4569999999999999999887653 10 001
Q ss_pred ----------------------eE-------------EEEecCCCCCC-----CCCCeeEEEECCCcc------------
Q psy10572 108 ----------------------VQ-------------FVVWNGKHGYE-----REAPYDIIHVSPSYF------------ 135 (204)
Q Consensus 108 ----------------------~~-------------~~~~d~~~~~~-----~~~~~D~v~~~~~~~------------ 135 (204)
++ +.++|+..... ...+||+|++++++.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~ 191 (250)
T 1o9g_A 112 RREQSERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQ 191 (250)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHH
T ss_pred hhhhhhhcccccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeecccccccccccc
Confidence 55 89999776432 334799999987653
Q ss_pred ---chhHHHHHhcCCCcEEEEEec
Q psy10572 136 ---TIPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 136 ---~~~~~~~~~Lk~gG~l~~~~~ 156 (204)
.+++.+.++|+|||+++++..
T Consensus 192 ~~~~~l~~~~~~LkpgG~l~~~~~ 215 (250)
T 1o9g_A 192 PVAGLLRSLASALPAHAVIAVTDR 215 (250)
T ss_dssp HHHHHHHHHHHHSCTTCEEEEEES
T ss_pred HHHHHHHHHHHhcCCCcEEEEeCc
Confidence 345788899999999999433
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.56 E-value=7.1e-14 Score=105.39 Aligned_cols=107 Identities=14% Similarity=0.154 Sum_probs=84.5
Q ss_pred HHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCC
Q psy10572 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKH 117 (204)
Q Consensus 38 ~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 117 (204)
..+.+.+.....++.+|||+|||+|.++..+++... +++|+|+++.+++.++++. +++.++.+|+..
T Consensus 28 ~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~----------~~~~~~~~d~~~ 94 (239)
T 3bxo_A 28 SDIADLVRSRTPEASSLLDVACGTGTHLEHFTKEFG---DTAGLELSEDMLTHARKRL----------PDATLHQGDMRD 94 (239)
T ss_dssp HHHHHHHHHHCTTCCEEEEETCTTSHHHHHHHHHHS---EEEEEESCHHHHHHHHHHC----------TTCEEEECCTTT
T ss_pred HHHHHHHHHhcCCCCeEEEecccCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhC----------CCCEEEECCHHH
Confidence 344555554456788999999999999999999873 8999999999999998763 368899999876
Q ss_pred CCCCCCCeeEEEECC-Cccc---------hhHHHHHhcCCCcEEEEEecCC
Q psy10572 118 GYEREAPYDIIHVSP-SYFT---------IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 118 ~~~~~~~~D~v~~~~-~~~~---------~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
... .++||+|++.. .+++ +++.+.++|+|||.+++..+..
T Consensus 95 ~~~-~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 144 (239)
T 3bxo_A 95 FRL-GRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPWWF 144 (239)
T ss_dssp CCC-SSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCCCC
T ss_pred ccc-CCCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEeccC
Confidence 544 57899999543 4433 4478889999999999986544
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.56 E-value=5.8e-14 Score=105.39 Aligned_cols=102 Identities=20% Similarity=0.294 Sum_probs=83.5
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC---CCCCC
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY---EREAP 124 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~ 124 (204)
+.++.+|||+|||+|.++..+++..++.++++++|+++.+++.+++++.. .++++++.+|+.... ...++
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~-------~~~v~~~~~d~~~~~~~~~~~~~ 143 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEE-------RRNIVPILGDATKPEEYRALVPK 143 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSS-------CTTEEEEECCTTCGGGGTTTCCC
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhc-------cCCCEEEEccCCCcchhhcccCC
Confidence 46788999999999999999999875557999999999999999888765 258999999987521 12357
Q ss_pred eeEEEECCCccc----hhHHHHHhcCCCcEEEEEec
Q psy10572 125 YDIIHVSPSYFT----IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 125 ~D~v~~~~~~~~----~~~~~~~~Lk~gG~l~~~~~ 156 (204)
||+|+++.+..+ ++..+.++|+|||++++.+.
T Consensus 144 ~D~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 179 (227)
T 1g8a_A 144 VDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIAVK 179 (227)
T ss_dssp EEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ceEEEECCCCHhHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 999999877553 36788999999999999753
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.9e-14 Score=109.22 Aligned_cols=110 Identities=18% Similarity=0.155 Sum_probs=85.8
Q ss_pred HHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC
Q psy10572 39 QMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG 118 (204)
Q Consensus 39 ~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~ 118 (204)
..+..+..++.++.+|||+|||+|..+..+++... +++|+|+|+.+++.++++.. ..+++++.+|+...
T Consensus 45 ~~~~~~~~~~~~~~~vLD~GcG~G~~~~~la~~~~---~v~gvD~s~~~~~~a~~~~~--------~~~~~~~~~d~~~~ 113 (245)
T 3ggd_A 45 VDLPRFELLFNPELPLIDFACGNGTQTKFLSQFFP---RVIGLDVSKSALEIAAKENT--------AANISYRLLDGLVP 113 (245)
T ss_dssp HHHHHHTTTSCTTSCEEEETCTTSHHHHHHHHHSS---CEEEEESCHHHHHHHHHHSC--------CTTEEEEECCTTCH
T ss_pred HHHHHHhhccCCCCeEEEEcCCCCHHHHHHHHhCC---CEEEEECCHHHHHHHHHhCc--------ccCceEEECccccc
Confidence 33444444567889999999999999999999873 89999999999999998763 24799999997753
Q ss_pred CCC-----CCCeeEEEECCCccc--------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 119 YER-----EAPYDIIHVSPSYFT--------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 119 ~~~-----~~~~D~v~~~~~~~~--------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
... ...||+|+++..+++ +++++.++|||||++++......
T Consensus 114 ~~~~~~~~~~~~d~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 167 (245)
T 3ggd_A 114 EQAAQIHSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTG 167 (245)
T ss_dssp HHHHHHHHHHCSCEEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTT
T ss_pred ccccccccccCccEEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCcc
Confidence 221 124899999877654 45788899999999888765543
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.56 E-value=4.5e-14 Score=116.37 Aligned_cols=125 Identities=18% Similarity=0.216 Sum_probs=96.0
Q ss_pred ccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceE
Q psy10572 30 DISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQ 109 (204)
Q Consensus 30 ~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~ 109 (204)
...+..........+. +.++.+|||+|||+|..+..++...+..++++++|+++.+++.+++++...+ ..++.
T Consensus 241 ~~~qd~~s~l~~~~l~--~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g-----~~~v~ 313 (450)
T 2yxl_A 241 IIVQEEASAVASIVLD--PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMG-----IKIVK 313 (450)
T ss_dssp EEECCHHHHHHHHHHC--CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTT-----CCSEE
T ss_pred EEecCchhHHHHHhcC--CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcC-----CCcEE
Confidence 3334444444455554 6788999999999999999999987434799999999999999999987743 45799
Q ss_pred EEEecCCCCC--CCCCCeeEEEECCCcc----------------------------chhHHHHHhcCCCcEEEEEecCCC
Q psy10572 110 FVVWNGKHGY--EREAPYDIIHVSPSYF----------------------------TIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 110 ~~~~d~~~~~--~~~~~~D~v~~~~~~~----------------------------~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
++.+|+.... .+.++||+|++++++. .+++.+.++|||||++++++++..
T Consensus 314 ~~~~D~~~~~~~~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~ 393 (450)
T 2yxl_A 314 PLVKDARKAPEIIGEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIF 393 (450)
T ss_dssp EECSCTTCCSSSSCSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCC
T ss_pred EEEcChhhcchhhccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 9999977543 3336799999976552 245778899999999999887765
Q ss_pred Cc
Q psy10572 160 KG 161 (204)
Q Consensus 160 ~~ 161 (204)
..
T Consensus 394 ~~ 395 (450)
T 2yxl_A 394 KE 395 (450)
T ss_dssp GG
T ss_pred hh
Confidence 33
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=6.4e-14 Score=110.17 Aligned_cols=121 Identities=13% Similarity=0.123 Sum_probs=88.9
Q ss_pred HHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCcc--ccCccceEEEEe
Q psy10572 36 IHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSE--LLDQGRVQFVVW 113 (204)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 113 (204)
+...+.+.+...+.++.+|||+|||+|.++..+++. +..+++++|+++.+++.++++....... .....++.++.+
T Consensus 20 l~~~~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 97 (313)
T 3bgv_A 20 LIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKG--RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITA 97 (313)
T ss_dssp HHHHHHHHHHHTC--CCEEEEETCTTTTTHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEEC
T ss_pred HHHHHHHHhhhccCCCCEEEEECCCCcHHHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEe
Confidence 344445555433457889999999999999988874 3469999999999999999987642100 001247899999
Q ss_pred cCCCCC----C--CCCCeeEEEECCCccch----------hHHHHHhcCCCcEEEEEecCC
Q psy10572 114 NGKHGY----E--REAPYDIIHVSPSYFTI----------PQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 114 d~~~~~----~--~~~~~D~v~~~~~~~~~----------~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
|+.... + +.++||+|+++..++++ ++++.++|+|||.+++++++.
T Consensus 98 D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 158 (313)
T 3bgv_A 98 DSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNS 158 (313)
T ss_dssp CTTTSCSTTTCSSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred cccccchhhhcccCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCCh
Confidence 987653 3 23589999999887543 467889999999999998865
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.4e-14 Score=108.81 Aligned_cols=120 Identities=17% Similarity=0.236 Sum_probs=90.9
Q ss_pred ccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceE
Q psy10572 30 DISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQ 109 (204)
Q Consensus 30 ~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~ 109 (204)
....+.....+...+. ..++.+|||+|||+|..+..+++.+++.++++++|+++.+++.|++++...+ ...+++
T Consensus 51 ~~~~~~~~~~l~~l~~--~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g----~~~~i~ 124 (229)
T 2avd_A 51 SMMTCEQAQLLANLAR--LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAE----AEHKID 124 (229)
T ss_dssp GSCCHHHHHHHHHHHH--HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTT----CTTTEE
T ss_pred CccCHHHHHHHHHHHH--hcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCC----CCCeEE
Confidence 3445555444444333 4677899999999999999999987446799999999999999999987643 125799
Q ss_pred EEEecCCCCCC----C--CCCeeEEEECCCcc---chhHHHHHhcCCCcEEEEEe
Q psy10572 110 FVVWNGKHGYE----R--EAPYDIIHVSPSYF---TIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 110 ~~~~d~~~~~~----~--~~~~D~v~~~~~~~---~~~~~~~~~Lk~gG~l~~~~ 155 (204)
++.+|+.+... . .++||+|+++.... .+++.+.++|+|||.+++.-
T Consensus 125 ~~~~d~~~~~~~~~~~~~~~~~D~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~~ 179 (229)
T 2avd_A 125 LRLKPALETLDELLAAGEAGTFDVAVVDADKENCSAYYERCLQLLRPGGILAVLR 179 (229)
T ss_dssp EEESCHHHHHHHHHHTTCTTCEEEEEECSCSTTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEcCHHHHHHHHHhcCCCCCccEEEECCCHHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 99998653211 1 16799999987754 36788999999999999843
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.7e-14 Score=103.48 Aligned_cols=102 Identities=16% Similarity=0.151 Sum_probs=84.0
Q ss_pred HHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC
Q psy10572 40 MLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY 119 (204)
Q Consensus 40 ~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 119 (204)
+++.+. +.++.+|||+|||+|.++..+++... +++++|+++.+++.++++ .+++++..+| ..
T Consensus 9 ~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~----------~~~v~~~~~d---~~ 70 (170)
T 3i9f_A 9 YLPNIF--EGKKGVIVDYGCGNGFYCKYLLEFAT---KLYCIDINVIALKEVKEK----------FDSVITLSDP---KE 70 (170)
T ss_dssp THHHHH--SSCCEEEEEETCTTCTTHHHHHTTEE---EEEEECSCHHHHHHHHHH----------CTTSEEESSG---GG
T ss_pred HHHhcC--cCCCCeEEEECCCCCHHHHHHHhhcC---eEEEEeCCHHHHHHHHHh----------CCCcEEEeCC---CC
Confidence 344454 67888999999999999999999762 999999999999999887 1478888888 33
Q ss_pred CCCCCeeEEEECCCccc------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 120 EREAPYDIIHVSPSYFT------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 120 ~~~~~~D~v~~~~~~~~------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
.+.++||+|+++..+++ +++++.+.|+|||.+++..+...
T Consensus 71 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 116 (170)
T 3i9f_A 71 IPDNSVDFILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDWRKE 116 (170)
T ss_dssp SCTTCEEEEEEESCSTTCSCHHHHHHHHHHHEEEEEEEEEEEECSS
T ss_pred CCCCceEEEEEccchhcccCHHHHHHHHHHhcCCCCEEEEEEcCcc
Confidence 45578999999988876 46899999999999999876543
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=5.4e-15 Score=121.48 Aligned_cols=126 Identities=17% Similarity=0.148 Sum_probs=95.6
Q ss_pred CcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccc
Q psy10572 28 GADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGR 107 (204)
Q Consensus 28 ~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~ 107 (204)
|..+.++.....+...+. +.++.+|||+|||+|..+..++...+..+.|+++|+++.+++.+++++...+ ..
T Consensus 81 G~~~vQd~ss~l~a~~L~--~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G-----~~- 152 (464)
T 3m6w_A 81 GLYYIQEPSAQAVGVLLD--PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWG-----AP- 152 (464)
T ss_dssp TSEEECCTTTHHHHHHHC--CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHC-----CC-
T ss_pred CeEEEECHHHHHHHHhcC--cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-----Ce-
Confidence 333333334444455555 6788999999999999999999987555799999999999999999998754 34
Q ss_pred eEEEEecCCCCC-CCCCCeeEEEECCCcc----------------------------chhHHHHHhcCCCcEEEEEecCC
Q psy10572 108 VQFVVWNGKHGY-EREAPYDIIHVSPSYF----------------------------TIPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 108 ~~~~~~d~~~~~-~~~~~~D~v~~~~~~~----------------------------~~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
+.++.+|..... ...++||+|++++++. .+++.+.++|||||+|+.++++.
T Consensus 153 v~~~~~Da~~l~~~~~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~ 232 (464)
T 3m6w_A 153 LAVTQAPPRALAEAFGTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTF 232 (464)
T ss_dssp CEEECSCHHHHHHHHCSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred EEEEECCHHHhhhhccccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccC
Confidence 888888865432 1246899999987762 24467788999999999988776
Q ss_pred CCc
Q psy10572 159 FKG 161 (204)
Q Consensus 159 ~~~ 161 (204)
...
T Consensus 233 ~~e 235 (464)
T 3m6w_A 233 APE 235 (464)
T ss_dssp CGG
T ss_pred chh
Confidence 533
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.7e-14 Score=108.12 Aligned_cols=97 Identities=15% Similarity=0.088 Sum_probs=79.2
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC--CCCCCC
Q psy10572 47 KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG--YEREAP 124 (204)
Q Consensus 47 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~ 124 (204)
.+.++.+|||+|||+|.++..+++.. .+++|+|+|+.+++.++++ +.++.+|.... ..+.++
T Consensus 38 ~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~-------------~~~~~~d~~~~~~~~~~~~ 101 (240)
T 3dli_A 38 YFKGCRRVLDIGCGRGEFLELCKEEG---IESIGVDINEDMIKFCEGK-------------FNVVKSDAIEYLKSLPDKY 101 (240)
T ss_dssp GTTTCSCEEEETCTTTHHHHHHHHHT---CCEEEECSCHHHHHHHHTT-------------SEEECSCHHHHHHTSCTTC
T ss_pred hhcCCCeEEEEeCCCCHHHHHHHhCC---CcEEEEECCHHHHHHHHhh-------------cceeeccHHHHhhhcCCCC
Confidence 35778899999999999999998874 3899999999999998753 56677776542 345688
Q ss_pred eeEEEECCCccc--------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 125 YDIIHVSPSYFT--------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 125 ~D~v~~~~~~~~--------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
||+|++...+++ +++++.++|||||.+++.+++..
T Consensus 102 fD~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 144 (240)
T 3dli_A 102 LDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPT 144 (240)
T ss_dssp BSEEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTT
T ss_pred eeEEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence 999999887755 45788899999999999988765
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.2e-13 Score=100.65 Aligned_cols=99 Identities=22% Similarity=0.255 Sum_probs=82.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
++++.+|||+|||+|.++..+++.. .+++++|+++.+++.++++. +++.++.+|+.....+.++||+
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~----------~~~~~~~~d~~~~~~~~~~~D~ 110 (195)
T 3cgg_A 44 APRGAKILDAGCGQGRIGGYLSKQG---HDVLGTDLDPILIDYAKQDF----------PEARWVVGDLSVDQISETDFDL 110 (195)
T ss_dssp SCTTCEEEEETCTTTHHHHHHHHTT---CEEEEEESCHHHHHHHHHHC----------TTSEEEECCTTTSCCCCCCEEE
T ss_pred ccCCCeEEEECCCCCHHHHHHHHCC---CcEEEEcCCHHHHHHHHHhC----------CCCcEEEcccccCCCCCCceeE
Confidence 5788899999999999999998863 49999999999999998864 3578899998775555678999
Q ss_pred EEEC-CCccc--------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 128 IHVS-PSYFT--------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 128 v~~~-~~~~~--------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
|+++ ..+++ +++.+.++|+|||.+++.++...
T Consensus 111 i~~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~ 151 (195)
T 3cgg_A 111 IVSAGNVMGFLAEDGREPALANIHRALGADGRAVIGFGAGR 151 (195)
T ss_dssp EEECCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETTS
T ss_pred EEECCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCCC
Confidence 9998 34432 45788899999999999887664
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.55 E-value=5.5e-14 Score=104.81 Aligned_cols=113 Identities=13% Similarity=0.125 Sum_probs=82.8
Q ss_pred HHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC
Q psy10572 39 QMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG 118 (204)
Q Consensus 39 ~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~ 118 (204)
..++.+. +.++.+|||+|||+|.++..+++.. +.++++|+|+|+.+++.+.+....... ....++++++++|+...
T Consensus 18 ~~~~~l~--~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~gvD~s~~~l~~~~~~a~~~~~-~~~~~~v~~~~~d~~~l 93 (218)
T 3mq2_A 18 AEFEQLR--SQYDDVVLDVGTGDGKHPYKVARQN-PSRLVVALDADKSRMEKISAKAAAKPA-KGGLPNLLYLWATAERL 93 (218)
T ss_dssp HHHHHHH--TTSSEEEEEESCTTCHHHHHHHHHC-TTEEEEEEESCGGGGHHHHHHHTSCGG-GTCCTTEEEEECCSTTC
T ss_pred HHHHHhh--ccCCCEEEEecCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhhh-hcCCCceEEEecchhhC
Confidence 3445555 6788999999999999999999986 678999999999988864333322100 01245899999998876
Q ss_pred CCCCCCeeEEEECCCc-----------cchhHHHHHhcCCCcEEEEEec
Q psy10572 119 YEREAPYDIIHVSPSY-----------FTIPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 119 ~~~~~~~D~v~~~~~~-----------~~~~~~~~~~Lk~gG~l~~~~~ 156 (204)
..+.+. |.+++.... ..+++++.++|||||.+++.+.
T Consensus 94 ~~~~~~-d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 141 (218)
T 3mq2_A 94 PPLSGV-GELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALN 141 (218)
T ss_dssp CSCCCE-EEEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCCCC-CEEEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEec
Confidence 555555 777644322 3456899999999999999764
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.9e-14 Score=113.62 Aligned_cols=113 Identities=18% Similarity=0.266 Sum_probs=89.9
Q ss_pred HHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecC
Q psy10572 36 IHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNG 115 (204)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~ 115 (204)
....+++.+. ..++.+|||+|||+|.++..+++.. +..+++++|+++.+++.+++++..++ ....++.+|.
T Consensus 184 ~~~~ll~~l~--~~~~~~VLDlGcG~G~~~~~la~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~------~~~~~~~~d~ 254 (343)
T 2pjd_A 184 GSQLLLSTLT--PHTKGKVLDVGCGAGVLSVAFARHS-PKIRLTLCDVSAPAVEASRATLAANG------VEGEVFASNV 254 (343)
T ss_dssp HHHHHHHHSC--TTCCSBCCBTTCTTSHHHHHHHHHC-TTCBCEEEESBHHHHHHHHHHHHHTT------CCCEEEECST
T ss_pred HHHHHHHhcC--cCCCCeEEEecCccCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhC------CCCEEEEccc
Confidence 3455555553 3456799999999999999999986 66799999999999999999987643 2367788887
Q ss_pred CCCCCCCCCeeEEEECCCccc-----------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 116 KHGYEREAPYDIIHVSPSYFT-----------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 116 ~~~~~~~~~~D~v~~~~~~~~-----------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
.... .++||+|+++.++++ +++++.++|+|||.+++......
T Consensus 255 ~~~~--~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 307 (343)
T 2pjd_A 255 FSEV--KGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANAFL 307 (343)
T ss_dssp TTTC--CSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEETTS
T ss_pred cccc--cCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcCCC
Confidence 6543 468999999988763 45788899999999999876553
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.1e-14 Score=108.37 Aligned_cols=118 Identities=18% Similarity=0.241 Sum_probs=88.7
Q ss_pred ChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEE
Q psy10572 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVV 112 (204)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 112 (204)
.+.....+...+. ..++.+|||+|||+|..+..+++..++.++++++|+++.+++.|++++...+ ..++++++.
T Consensus 57 ~~~~~~~l~~l~~--~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g----~~~~i~~~~ 130 (232)
T 3cbg_A 57 SPEQAQFLGLLIS--LTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAG----VAEKISLRL 130 (232)
T ss_dssp CHHHHHHHHHHHH--HHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHT----CGGGEEEEE
T ss_pred CHHHHHHHHHHHH--hcCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC----CCCcEEEEE
Confidence 4444444433333 3567799999999999999999987446799999999999999999987643 124699999
Q ss_pred ecCCCCC----CCC--CCeeEEEECCCcc---chhHHHHHhcCCCcEEEEEec
Q psy10572 113 WNGKHGY----ERE--APYDIIHVSPSYF---TIPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 113 ~d~~~~~----~~~--~~~D~v~~~~~~~---~~~~~~~~~Lk~gG~l~~~~~ 156 (204)
+|+.+.. ... ++||+|+++.... .+++.+.++|+|||++++...
T Consensus 131 ~d~~~~l~~l~~~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 183 (232)
T 3cbg_A 131 GPALATLEQLTQGKPLPEFDLIFIDADKRNYPRYYEIGLNLLRRGGLMVIDNV 183 (232)
T ss_dssp SCHHHHHHHHHTSSSCCCEEEEEECSCGGGHHHHHHHHHHTEEEEEEEEEECT
T ss_pred cCHHHHHHHHHhcCCCCCcCEEEECCCHHHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 9864321 112 6799999987654 356888999999999998543
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=2.4e-14 Score=109.53 Aligned_cols=109 Identities=21% Similarity=0.350 Sum_probs=85.8
Q ss_pred HHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCC
Q psy10572 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKH 117 (204)
Q Consensus 38 ~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 117 (204)
..+++.+...+.++.+|||+|||+|.++..+++.. . +++|+|+++.+++.+++++..++ .. +++..+|+..
T Consensus 108 ~~~~~~l~~~~~~~~~VLDiGcG~G~l~~~la~~g-~--~v~gvDi~~~~v~~a~~n~~~~~-----~~-v~~~~~d~~~ 178 (254)
T 2nxc_A 108 RLALKALARHLRPGDKVLDLGTGSGVLAIAAEKLG-G--KALGVDIDPMVLPQAEANAKRNG-----VR-PRFLEGSLEA 178 (254)
T ss_dssp HHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHTT-C--EEEEEESCGGGHHHHHHHHHHTT-----CC-CEEEESCHHH
T ss_pred HHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhC-C--eEEEEECCHHHHHHHHHHHHHcC-----Cc-EEEEECChhh
Confidence 33444444446788999999999999999988864 3 99999999999999999987744 22 7888888655
Q ss_pred CCCCCCCeeEEEECCCccc---hhHHHHHhcCCCcEEEEEec
Q psy10572 118 GYEREAPYDIIHVSPSYFT---IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 118 ~~~~~~~~D~v~~~~~~~~---~~~~~~~~Lk~gG~l~~~~~ 156 (204)
. .+.++||+|+++...+. ++..+.++|+|||+++++..
T Consensus 179 ~-~~~~~fD~Vv~n~~~~~~~~~l~~~~~~LkpgG~lils~~ 219 (254)
T 2nxc_A 179 A-LPFGPFDLLVANLYAELHAALAPRYREALVPGGRALLTGI 219 (254)
T ss_dssp H-GGGCCEEEEEEECCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred c-CcCCCCCEEEECCcHHHHHHHHHHHHHHcCCCCEEEEEee
Confidence 3 23468999999876543 56788899999999999654
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.53 E-value=5.4e-14 Score=110.15 Aligned_cols=108 Identities=12% Similarity=0.098 Sum_probs=77.0
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccc-cCccceEEEEecCCCC--------CC
Q psy10572 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSEL-LDQGRVQFVVWNGKHG--------YE 120 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~d~~~~--------~~ 120 (204)
++.+|||+|||+|..+..++.. ...+|+|+|+|+.+++.|+++........ ...-++++...|+... ..
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~--~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~ 125 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYG--EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVF 125 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTC
T ss_pred CCCeEEEEecCCcHhHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccc
Confidence 4689999999999866655553 23589999999999999999876522000 0000256777776321 13
Q ss_pred CCCCeeEEEECCCccc---------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 121 REAPYDIIHVSPSYFT---------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 121 ~~~~~D~v~~~~~~~~---------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
+.++||+|++...+++ +++.+.++|||||++++++++..
T Consensus 126 ~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~~ 173 (302)
T 2vdw_A 126 YFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDGD 173 (302)
T ss_dssp CSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECHH
T ss_pred cCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCHH
Confidence 4578999998776542 45789999999999999888644
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.6e-14 Score=118.59 Aligned_cols=125 Identities=16% Similarity=0.097 Sum_probs=95.8
Q ss_pred ccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceE
Q psy10572 30 DISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQ 109 (204)
Q Consensus 30 ~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~ 109 (204)
...++.........+. +.++.+|||+|||+|..+..++...+..+.|+++|+++.+++.+++++...+ ..++.
T Consensus 87 ~~vQd~ss~l~~~~L~--~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g-----~~nv~ 159 (456)
T 3m4x_A 87 EYSQEPSAMIVGTAAA--AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWG-----VSNAI 159 (456)
T ss_dssp CEECCTTTHHHHHHHC--CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHT-----CSSEE
T ss_pred EEEECHHHHHHHHHcC--CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcC-----CCceE
Confidence 3333333444455555 6788999999999999999999987555799999999999999999998754 45789
Q ss_pred EEEecCCCCC-CCCCCeeEEEECCCcc----------------------------chhHHHHHhcCCCcEEEEEecCCCC
Q psy10572 110 FVVWNGKHGY-EREAPYDIIHVSPSYF----------------------------TIPQKLLDQLVPGGRMVMPVGEPFK 160 (204)
Q Consensus 110 ~~~~d~~~~~-~~~~~~D~v~~~~~~~----------------------------~~~~~~~~~Lk~gG~l~~~~~~~~~ 160 (204)
++.+|..... ...++||+|++++++. .+++.+.++|||||+|+.++++...
T Consensus 160 v~~~Da~~l~~~~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~ 239 (456)
T 3m4x_A 160 VTNHAPAELVPHFSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAP 239 (456)
T ss_dssp EECCCHHHHHHHHTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCG
T ss_pred EEeCCHHHhhhhccccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeeccc
Confidence 9998865432 1236899999998742 2456778999999999998886653
Q ss_pred c
Q psy10572 161 G 161 (204)
Q Consensus 161 ~ 161 (204)
.
T Consensus 240 e 240 (456)
T 3m4x_A 240 E 240 (456)
T ss_dssp G
T ss_pred c
Confidence 3
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=2.8e-14 Score=107.20 Aligned_cols=103 Identities=20% Similarity=0.145 Sum_probs=78.6
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcC-HHHHHHH---HHHhhhcCccccCccceEEEEecCCCCCCC-C
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHV-MELAESS---IKNIDKGNSELLDQGRVQFVVWNGKHGYER-E 122 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~-~~~~~~a---~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~ 122 (204)
..++.+|||||||+|.++..+++.. +..+|+|+|+| +.+++.| +++.... ..+++.++.+|....... .
T Consensus 22 ~~~~~~vLDiGCG~G~~~~~la~~~-~~~~v~GvD~s~~~ml~~A~~A~~~~~~~-----~~~~v~~~~~d~~~l~~~~~ 95 (225)
T 3p2e_A 22 GQFDRVHIDLGTGDGRNIYKLAIND-QNTFYIGIDPVKENLFDISKKIIKKPSKG-----GLSNVVFVIAAAESLPFELK 95 (225)
T ss_dssp TTCSEEEEEETCTTSHHHHHHHHTC-TTEEEEEECSCCGGGHHHHHHHTSCGGGT-----CCSSEEEECCBTTBCCGGGT
T ss_pred CCCCCEEEEEeccCcHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHHHHHc-----CCCCeEEEEcCHHHhhhhcc
Confidence 4788899999999999999998765 67799999999 7777766 6665542 246899999997765321 2
Q ss_pred CCeeEEEECCCcc-----------chhHHHHHhcCCCcEEEEEec
Q psy10572 123 APYDIIHVSPSYF-----------TIPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 123 ~~~D~v~~~~~~~-----------~~~~~~~~~Lk~gG~l~~~~~ 156 (204)
..+|.|.++.+.. .+++++.++|||||.+++.+.
T Consensus 96 d~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~ 140 (225)
T 3p2e_A 96 NIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTT 140 (225)
T ss_dssp TCEEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEEC
T ss_pred CeEEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEe
Confidence 5677777776543 246789999999999999443
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.53 E-value=4e-14 Score=112.19 Aligned_cols=120 Identities=14% Similarity=0.134 Sum_probs=88.0
Q ss_pred ChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEE
Q psy10572 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVV 112 (204)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 112 (204)
.......+.+.+.. ..++.+|||+|||+|.++..+++.. ++|+++|+|+.+++.|++++..++ +...++++++
T Consensus 137 q~~~~~~l~~~~~~-~~~~~~VLDlgcGtG~~sl~la~~g---a~V~~VD~s~~al~~a~~n~~~~g---l~~~~v~~i~ 209 (332)
T 2igt_A 137 QIVHWEWLKNAVET-ADRPLKVLNLFGYTGVASLVAAAAG---AEVTHVDASKKAIGWAKENQVLAG---LEQAPIRWIC 209 (332)
T ss_dssp GHHHHHHHHHHHHH-SSSCCEEEEETCTTCHHHHHHHHTT---CEEEEECSCHHHHHHHHHHHHHHT---CTTSCEEEEC
T ss_pred HHHHHHHHHHHHHh-cCCCCcEEEcccccCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHcC---CCccceEEEE
Confidence 33334445554432 3567799999999999999999854 399999999999999999998754 1112489999
Q ss_pred ecCCCCCCC----CCCeeEEEECCCcc----------------chhHHHHHhcCCCcEEEEEecCCC
Q psy10572 113 WNGKHGYER----EAPYDIIHVSPSYF----------------TIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 113 ~d~~~~~~~----~~~~D~v~~~~~~~----------------~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
+|+...... ..+||+|+++++.. .++..+.++|+|||.+++.+....
T Consensus 210 ~D~~~~l~~~~~~~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~ 276 (332)
T 2igt_A 210 EDAMKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSI 276 (332)
T ss_dssp SCHHHHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCT
T ss_pred CcHHHHHHHHHhcCCCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCCC
Confidence 997653221 35799999988741 245777899999999877665443
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.53 E-value=8.8e-14 Score=100.03 Aligned_cols=103 Identities=17% Similarity=0.228 Sum_probs=80.0
Q ss_pred HHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCC
Q psy10572 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGK 116 (204)
Q Consensus 37 ~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~ 116 (204)
...+++.+.....++.+|||+|||+|.++..+++.. +++|+|+|+.+++. . .+++++.+|+.
T Consensus 10 ~~~l~~~l~~~~~~~~~vLD~GcG~G~~~~~l~~~~----~v~gvD~s~~~~~~------~--------~~~~~~~~d~~ 71 (170)
T 3q87_B 10 TYTLMDALEREGLEMKIVLDLGTSTGVITEQLRKRN----TVVSTDLNIRALES------H--------RGGNLVRADLL 71 (170)
T ss_dssp HHHHHHHHHHHTCCSCEEEEETCTTCHHHHHHTTTS----EEEEEESCHHHHHT------C--------SSSCEEECSTT
T ss_pred HHHHHHHHHhhcCCCCeEEEeccCccHHHHHHHhcC----cEEEEECCHHHHhc------c--------cCCeEEECChh
Confidence 344555555222567799999999999999998853 99999999999887 1 36889999987
Q ss_pred CCCCCCCCeeEEEECCCccc---------------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 117 HGYEREAPYDIIHVSPSYFT---------------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 117 ~~~~~~~~~D~v~~~~~~~~---------------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
.. .+.++||+|+++.++.+ ++..+.+.+ |||.+++......
T Consensus 72 ~~-~~~~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~ 127 (170)
T 3q87_B 72 CS-INQESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEAN 127 (170)
T ss_dssp TT-BCGGGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGGG
T ss_pred hh-cccCCCCEEEECCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecCC
Confidence 63 44478999999988762 457788888 9999999875543
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.52 E-value=8.4e-14 Score=114.11 Aligned_cols=125 Identities=18% Similarity=0.200 Sum_probs=97.2
Q ss_pred CcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccc
Q psy10572 28 GADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGR 107 (204)
Q Consensus 28 ~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~ 107 (204)
|....+......+...+. +.++.+|||+|||+|..+..++... +.++++++|+++.+++.+++++...+ . +
T Consensus 226 G~~~~qd~~s~~~~~~l~--~~~g~~VLDlgaG~G~~t~~la~~~-~~~~v~a~D~~~~~l~~~~~~~~~~g-----~-~ 296 (429)
T 1sqg_A 226 GWVTVQDASAQGCMTWLA--PQNGEHILDLCAAPGGKTTHILEVA-PEAQVVAVDIDEQRLSRVYDNLKRLG-----M-K 296 (429)
T ss_dssp TSEEECCHHHHTHHHHHC--CCTTCEEEEESCTTCHHHHHHHHHC-TTCEEEEEESSTTTHHHHHHHHHHTT-----C-C
T ss_pred CCeEeeCHHHHHHHHHcC--CCCcCeEEEECCCchHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHHHHHcC-----C-C
Confidence 444445555556666665 6788999999999999999999987 45799999999999999999987743 2 4
Q ss_pred eEEEEecCCCCC--CCCCCeeEEEECCCcc----------------------------chhHHHHHhcCCCcEEEEEecC
Q psy10572 108 VQFVVWNGKHGY--EREAPYDIIHVSPSYF----------------------------TIPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 108 ~~~~~~d~~~~~--~~~~~~D~v~~~~~~~----------------------------~~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
+.++.+|+.... .+.++||+|++++++. .+++.+.++|||||++++++++
T Consensus 297 ~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs 376 (429)
T 1sqg_A 297 ATVKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCS 376 (429)
T ss_dssp CEEEECCTTCTHHHHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESC
T ss_pred eEEEeCchhhchhhcccCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 788899976543 3346899999987652 2356788999999999998876
Q ss_pred CCCc
Q psy10572 158 PFKG 161 (204)
Q Consensus 158 ~~~~ 161 (204)
....
T Consensus 377 ~~~~ 380 (429)
T 1sqg_A 377 VLPE 380 (429)
T ss_dssp CCGG
T ss_pred CChh
Confidence 6533
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.51 E-value=4.1e-13 Score=103.74 Aligned_cols=102 Identities=16% Similarity=0.091 Sum_probs=81.9
Q ss_pred CCCEEEEEcCCC---cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC--------
Q psy10572 50 PGARILDIGSGS---GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG-------- 118 (204)
Q Consensus 50 ~~~~vLdiG~G~---G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 118 (204)
+..+|||+|||+ |.++..+.+.. ++++|+++|+|+.+++.|++++.. .++++++.+|+...
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~-p~~~v~~vD~sp~~l~~Ar~~~~~-------~~~v~~~~~D~~~~~~~~~~~~ 148 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVN-PDARVVYVDIDPMVLTHGRALLAK-------DPNTAVFTADVRDPEYILNHPD 148 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHC-TTCEEEEEESSHHHHHHHHHHHTT-------CTTEEEEECCTTCHHHHHHSHH
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhC-CCCEEEEEECChHHHHHHHHhcCC-------CCCeEEEEeeCCCchhhhccch
Confidence 347999999999 98877666665 678999999999999999998743 25799999998642
Q ss_pred ---CCCCCCeeEEEECCCccc--------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 119 ---YEREAPYDIIHVSPSYFT--------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 119 ---~~~~~~~D~v~~~~~~~~--------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
.++..+||+|+++..+++ +++++.++|+|||+|+++.....
T Consensus 149 ~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~~ 200 (274)
T 2qe6_A 149 VRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVDT 200 (274)
T ss_dssp HHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBCS
T ss_pred hhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecCc
Confidence 122247999999987765 45788899999999999887653
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.1e-13 Score=105.65 Aligned_cols=112 Identities=20% Similarity=0.105 Sum_probs=78.2
Q ss_pred ccccccccCCcccCC---hHHHHHHHHHHhccCC----CCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHH
Q psy10572 19 RIKSRQIGYGADISS---PHIHAQMLELLKDKIK----PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESS 91 (204)
Q Consensus 19 ~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~----~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a 91 (204)
.+..+..+.+..++. +.....++..+...+. ++.+|||+|||+|.++..++... +.++++|+|+++.+++.|
T Consensus 27 ~~~~~~~~~~~~~p~~~~r~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~-~~~~v~gvD~s~~~~~~a 105 (254)
T 2h00_A 27 FGLSIDIPLERLIPTVPLRLNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATL-NGWYFLATEVDDMCFNYA 105 (254)
T ss_dssp HCCCCCCCTTSCCCCHHHHHHHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHH-HCCEEEEEESCHHHHHHH
T ss_pred CCeeeecCccccCCCccchHHHHHHHHHHHhhccccCCCCCEEEEeCCChhHHHHHHHHhC-CCCeEEEEECCHHHHHHH
Confidence 344455555555554 1233334444433332 56799999999999999998876 456999999999999999
Q ss_pred HHHhhhcCccccCccceEEEEecCCCC---CCC---CCCeeEEEECCCcc
Q psy10572 92 IKNIDKGNSELLDQGRVQFVVWNGKHG---YER---EAPYDIIHVSPSYF 135 (204)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~---~~~~D~v~~~~~~~ 135 (204)
++++..++ ...+++++++|+... ..+ .++||+|++++++.
T Consensus 106 ~~~~~~~~----~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i~~npp~~ 151 (254)
T 2h00_A 106 KKNVEQNN----LSDLIKVVKVPQKTLLMDALKEESEIIYDFCMCNPPFF 151 (254)
T ss_dssp HHHHHHTT----CTTTEEEEECCTTCSSTTTSTTCCSCCBSEEEECCCCC
T ss_pred HHHHHHcC----CCccEEEEEcchhhhhhhhhhcccCCcccEEEECCCCc
Confidence 99987743 123599999996542 222 25799999997764
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.2e-13 Score=109.96 Aligned_cols=98 Identities=17% Similarity=0.192 Sum_probs=79.3
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
+.++.+|||+|||+|.++..+++.. ..+++|+|+++ +++.|+++++.++ ..++++++.+|+.+...+.++||+
T Consensus 62 ~~~~~~VLDiGcGtG~ls~~la~~g--~~~v~gvD~s~-~~~~a~~~~~~~~----~~~~i~~~~~d~~~~~~~~~~~D~ 134 (340)
T 2fyt_A 62 IFKDKVVLDVGCGTGILSMFAAKAG--AKKVLGVDQSE-ILYQAMDIIRLNK----LEDTITLIKGKIEEVHLPVEKVDV 134 (340)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHTT--CSEEEEEESST-HHHHHHHHHHHTT----CTTTEEEEESCTTTSCCSCSCEEE
T ss_pred hcCCCEEEEeeccCcHHHHHHHHcC--CCEEEEEChHH-HHHHHHHHHHHcC----CCCcEEEEEeeHHHhcCCCCcEEE
Confidence 4678899999999999999998863 34899999997 9999999887644 125899999998876666678999
Q ss_pred EEECCC---cc------chhHHHHHhcCCCcEEE
Q psy10572 128 IHVSPS---YF------TIPQKLLDQLVPGGRMV 152 (204)
Q Consensus 128 v~~~~~---~~------~~~~~~~~~Lk~gG~l~ 152 (204)
|+++.. +. .++..+.++|||||+++
T Consensus 135 Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 135 IISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp EEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred EEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 998762 21 14567789999999997
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.3e-13 Score=110.13 Aligned_cols=99 Identities=20% Similarity=0.199 Sum_probs=80.0
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
+.++.+|||+|||+|.++..+++. +..+|+|+|+++ +++.|++++..++ ..++++++.+|+.....+.++||+
T Consensus 64 ~~~~~~VLDvGcG~G~~~~~la~~--g~~~v~gvD~s~-~l~~a~~~~~~~~----~~~~v~~~~~d~~~~~~~~~~fD~ 136 (349)
T 3q7e_A 64 LFKDKVVLDVGSGTGILCMFAAKA--GARKVIGIECSS-ISDYAVKIVKANK----LDHVVTIIKGKVEEVELPVEKVDI 136 (349)
T ss_dssp HHTTCEEEEESCTTSHHHHHHHHT--TCSEEEEEECST-HHHHHHHHHHHTT----CTTTEEEEESCTTTCCCSSSCEEE
T ss_pred cCCCCEEEEEeccchHHHHHHHHC--CCCEEEEECcHH-HHHHHHHHHHHcC----CCCcEEEEECcHHHccCCCCceEE
Confidence 467889999999999999999987 335999999995 9999999987754 124599999998877666689999
Q ss_pred EEECCCcc---------chhHHHHHhcCCCcEEEE
Q psy10572 128 IHVSPSYF---------TIPQKLLDQLVPGGRMVM 153 (204)
Q Consensus 128 v~~~~~~~---------~~~~~~~~~Lk~gG~l~~ 153 (204)
|+++.... .++..+.++|||||+++.
T Consensus 137 Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 137 IISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp EEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred EEEccccccccCchhHHHHHHHHHHhCCCCCEEcc
Confidence 99975322 144677899999999974
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.2e-14 Score=110.16 Aligned_cols=111 Identities=14% Similarity=0.071 Sum_probs=86.2
Q ss_pred HHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecC
Q psy10572 36 IHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNG 115 (204)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~ 115 (204)
+...+...+.. ..++.+|||+|||+|.++..+++.. .+|+|+|+++.+++.|++++...+ ..++++++.+|+
T Consensus 65 ~~~~l~~~~~~-~~~~~~vLD~gcG~G~~~~~la~~~---~~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~~~d~ 136 (241)
T 3gdh_A 65 IAEHIAGRVSQ-SFKCDVVVDAFCGVGGNTIQFALTG---MRVIAIDIDPVKIALARNNAEVYG----IADKIEFICGDF 136 (241)
T ss_dssp HHHHHHHHHHH-HSCCSEEEETTCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTT----CGGGEEEEESCH
T ss_pred HHHHHHHHhhh-ccCCCEEEECccccCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHcC----CCcCeEEEECCh
Confidence 34455544442 3478899999999999999999864 499999999999999999987743 125899999997
Q ss_pred CCCCCCCCCeeEEEECCCccchh------HHHHHhcCCCcEEEEEe
Q psy10572 116 KHGYEREAPYDIIHVSPSYFTIP------QKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 116 ~~~~~~~~~~D~v~~~~~~~~~~------~~~~~~Lk~gG~l~~~~ 155 (204)
.... +.++||+|+++.++++.. ..+.++|+|||.+++..
T Consensus 137 ~~~~-~~~~~D~v~~~~~~~~~~~~~~~~~~~~~~L~pgG~~i~~~ 181 (241)
T 3gdh_A 137 LLLA-SFLKADVVFLSPPWGGPDYATAETFDIRTMMSPDGFEIFRL 181 (241)
T ss_dssp HHHG-GGCCCSEEEECCCCSSGGGGGSSSBCTTTSCSSCHHHHHHH
T ss_pred HHhc-ccCCCCEEEECCCcCCcchhhhHHHHHHhhcCCcceeHHHH
Confidence 7544 447899999999887633 34678899999877654
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.1e-13 Score=103.30 Aligned_cols=106 Identities=23% Similarity=0.327 Sum_probs=81.8
Q ss_pred HHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCC
Q psy10572 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKH 117 (204)
Q Consensus 38 ~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 117 (204)
..+++.+. ..++.+|||+|||+|.++..+++.. .+++|+|+++.+++.++++ .++.+...+...
T Consensus 42 ~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~-----------~~~~~~~~~~~~ 105 (227)
T 3e8s_A 42 QAILLAIL--GRQPERVLDLGCGEGWLLRALADRG---IEAVGVDGDRTLVDAARAA-----------GAGEVHLASYAQ 105 (227)
T ss_dssp HHHHHHHH--HTCCSEEEEETCTTCHHHHHHHTTT---CEEEEEESCHHHHHHHHHT-----------CSSCEEECCHHH
T ss_pred HHHHHHhh--cCCCCEEEEeCCCCCHHHHHHHHCC---CEEEEEcCCHHHHHHHHHh-----------cccccchhhHHh
Confidence 34555554 4567899999999999999998873 4999999999999999876 145566666543
Q ss_pred C---C-CCCCCeeEEEECCCcc-----chhHHHHHhcCCCcEEEEEecCCC
Q psy10572 118 G---Y-EREAPYDIIHVSPSYF-----TIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 118 ~---~-~~~~~~D~v~~~~~~~-----~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
. . ....+||+|+++..++ .+++.+.++|+|||++++.+++..
T Consensus 106 ~~~~~~~~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 156 (227)
T 3e8s_A 106 LAEAKVPVGKDYDLICANFALLHQDIIELLSAMRTLLVPGGALVIQTLHPW 156 (227)
T ss_dssp HHTTCSCCCCCEEEEEEESCCCSSCCHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred hcccccccCCCccEEEECchhhhhhHHHHHHHHHHHhCCCeEEEEEecCcc
Confidence 2 2 3345699999987765 366899999999999999887654
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.50 E-value=1e-13 Score=108.49 Aligned_cols=102 Identities=25% Similarity=0.198 Sum_probs=83.0
Q ss_pred CEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC--CCCCCeeEEE
Q psy10572 52 ARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY--EREAPYDIIH 129 (204)
Q Consensus 52 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~v~ 129 (204)
.+|||||||+|.++..+++.. +..+++++|+++.+++.|++++... ..++++++.+|+.... .+.++||+|+
T Consensus 91 ~rVLdIG~G~G~la~~la~~~-p~~~v~~VEidp~vi~~Ar~~~~~~-----~~~rv~v~~~Da~~~l~~~~~~~fDvIi 164 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVY-PQSRNTVVELDAELARLSREWFDIP-----RAPRVKIRVDDARMVAESFTPASRDVII 164 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHS-TTCEEEEEESCHHHHHHHHHHSCCC-----CTTTEEEEESCHHHHHHTCCTTCEEEEE
T ss_pred CEEEEEECCcCHHHHHHHHHC-CCcEEEEEECCHHHHHHHHHhcccc-----CCCceEEEECcHHHHHhhccCCCCCEEE
Confidence 499999999999999999976 6679999999999999999987542 2468999999976532 2346899999
Q ss_pred ECCCcc----------chhHHHHHhcCCCcEEEEEecCCC
Q psy10572 130 VSPSYF----------TIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 130 ~~~~~~----------~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
++...+ .+++.+.++|+|||++++.+.+..
T Consensus 165 ~D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~~~ 204 (317)
T 3gjy_A 165 RDVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCGDHS 204 (317)
T ss_dssp ECCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEECT
T ss_pred ECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEEecCCc
Confidence 975332 256889999999999999887543
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.50 E-value=1.2e-13 Score=109.42 Aligned_cols=107 Identities=21% Similarity=0.197 Sum_probs=82.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC--CCCCCee
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY--EREAPYD 126 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D 126 (204)
..+.+|||||||+|..+..+++.. +..+++++|+++.+++.|++++..... .+..++++++.+|+.... .+.++||
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~-~~~~V~~VDis~~~l~~Ar~~~~~~~~-gl~~~rv~~~~~D~~~~l~~~~~~~fD 196 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHA-SIEQIDMCEIDKMVVDVSKQFFPDVAI-GYEDPRVNLVIGDGVAFLKNAAEGSYD 196 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHG-GGGSTTEEEEESCHHHHHHTSCTTCEE
T ss_pred CCCCEEEEECCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhcc-ccCCCcEEEEECCHHHHHHhccCCCcc
Confidence 456799999999999999999875 557999999999999999998764100 012358999999976431 2346899
Q ss_pred EEEECCCc----------cchhHHHHHhcCCCcEEEEEecC
Q psy10572 127 IIHVSPSY----------FTIPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 127 ~v~~~~~~----------~~~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
+|+++... ..+++.+.++|+|||++++...+
T Consensus 197 lIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 237 (334)
T 1xj5_A 197 AVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAES 237 (334)
T ss_dssp EEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred EEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEecCC
Confidence 99997652 23568899999999999997443
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.3e-13 Score=101.39 Aligned_cols=96 Identities=17% Similarity=0.161 Sum_probs=75.5
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCC-CceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC-------
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGP-EGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY------- 119 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~------- 119 (204)
+.++.+|||+|||+|.++..+++..++ .++++|+|+++.. ..+++.++++|+....
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~----------------~~~~v~~~~~d~~~~~~~~~~~~ 83 (201)
T 2plw_A 20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD----------------PIPNVYFIQGEIGKDNMNNIKNI 83 (201)
T ss_dssp CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC----------------CCTTCEEEECCTTTTSSCCC---
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC----------------CCCCceEEEccccchhhhhhccc
Confidence 578889999999999999999998732 5799999999831 1246888999977543
Q ss_pred ------------------CCCCCeeEEEECCCccc-----------------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 120 ------------------EREAPYDIIHVSPSYFT-----------------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 120 ------------------~~~~~~D~v~~~~~~~~-----------------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
.+.++||+|+++...+. +++.+.++|+|||.+++.++...
T Consensus 84 ~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 158 (201)
T 2plw_A 84 NYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGS 158 (201)
T ss_dssp --------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECST
T ss_pred cccccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCCC
Confidence 34568999999876543 34668899999999999877654
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.9e-13 Score=105.38 Aligned_cols=103 Identities=17% Similarity=0.110 Sum_probs=86.2
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCe
Q psy10572 46 DKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPY 125 (204)
Q Consensus 46 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 125 (204)
...+++.+|||+|||+|.+++.+++.. .++|+++|+++.+++.+++|++.++ ..++++++++|..... ..+.|
T Consensus 121 ~~~~~g~~VlD~~aG~G~~~i~~a~~g--~~~V~avD~np~a~~~~~~N~~~N~----v~~~v~~~~~D~~~~~-~~~~~ 193 (278)
T 3k6r_A 121 KVAKPDELVVDMFAGIGHLSLPIAVYG--KAKVIAIEKDPYTFKFLVENIHLNK----VEDRMSAYNMDNRDFP-GENIA 193 (278)
T ss_dssp HHCCTTCEEEETTCTTTTTTHHHHHHT--CCEEEEECCCHHHHHHHHHHHHHTT----CTTTEEEECSCTTTCC-CCSCE
T ss_pred HhcCCCCEEEEecCcCcHHHHHHHHhc--CCeEEEEECCHHHHHHHHHHHHHcC----CCCcEEEEeCcHHHhc-cccCC
Confidence 346889999999999999999999874 3589999999999999999999876 2357999999987654 45789
Q ss_pred eEEEECCCcc--chhHHHHHhcCCCcEEEEEe
Q psy10572 126 DIIHVSPSYF--TIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 126 D~v~~~~~~~--~~~~~~~~~Lk~gG~l~~~~ 155 (204)
|.|+++.+.. .++..+.++|++||++.+..
T Consensus 194 D~Vi~~~p~~~~~~l~~a~~~lk~gG~ih~~~ 225 (278)
T 3k6r_A 194 DRILMGYVVRTHEFIPKALSIAKDGAIIHYHN 225 (278)
T ss_dssp EEEEECCCSSGGGGHHHHHHHEEEEEEEEEEE
T ss_pred CEEEECCCCcHHHHHHHHHHHcCCCCEEEEEe
Confidence 9999997653 46788999999999997643
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.2e-13 Score=112.88 Aligned_cols=123 Identities=20% Similarity=0.223 Sum_probs=92.6
Q ss_pred cccCCcccC-ChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccc
Q psy10572 24 QIGYGADIS-SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSEL 102 (204)
Q Consensus 24 ~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~ 102 (204)
.+..+.++. ++.....+.+.+.. +.++.+|||+|||+|.++..+++.. .+|+|+|+++.+++.|++++..++
T Consensus 264 ~~~~~~F~q~n~~~~e~l~~~~~~-~~~~~~VLDlgcG~G~~sl~la~~~---~~V~gvD~s~~ai~~A~~n~~~ng--- 336 (425)
T 2jjq_A 264 LIHPNSFFQTNSYQAVNLVRKVSE-LVEGEKILDMYSGVGTFGIYLAKRG---FNVKGFDSNEFAIEMARRNVEINN--- 336 (425)
T ss_dssp EECTTSCCCSBHHHHHHHHHHHHH-HCCSSEEEEETCTTTHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHHT---
T ss_pred EEccccccccCHHHHHHHHHHhhc-cCCCCEEEEeeccchHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHcC---
Confidence 334444553 45555566666554 5778899999999999999999864 399999999999999999987754
Q ss_pred cCccceEEEEecCCCCCCCCCCeeEEEECCCccch---hHHHHHhcCCCcEEEEEecCC
Q psy10572 103 LDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTI---PQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 103 ~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~---~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
.. ++++.+|+...... +||+|+++++.... .-.....|+|+|++++++.+.
T Consensus 337 --l~-v~~~~~d~~~~~~~--~fD~Vv~dPPr~g~~~~~~~~l~~l~p~givyvsc~p~ 390 (425)
T 2jjq_A 337 --VD-AEFEVASDREVSVK--GFDTVIVDPPRAGLHPRLVKRLNREKPGVIVYVSCNPE 390 (425)
T ss_dssp --CC-EEEEECCTTTCCCT--TCSEEEECCCTTCSCHHHHHHHHHHCCSEEEEEESCHH
T ss_pred --Cc-EEEEECChHHcCcc--CCCEEEEcCCccchHHHHHHHHHhcCCCcEEEEECChH
Confidence 34 89999998765432 79999999886432 223334689999999987544
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.49 E-value=9.9e-13 Score=105.52 Aligned_cols=101 Identities=16% Similarity=0.054 Sum_probs=83.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC--CCCCCee
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY--EREAPYD 126 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D 126 (204)
....+|||||||+|..+..+++.. +..+++++|+ +.+++.|++++...+ ..++++++.+|+.... .+ ++||
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~~~~~p-~~~D 250 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYN-KEVEVTIVDL-PQQLEMMRKQTAGLS----GSERIHGHGANLLDRDVPFP-TGFD 250 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHS-TTCEEEEEEC-HHHHHHHHHHHTTCT----TGGGEEEEECCCCSSSCCCC-CCCS
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhC-CCCEEEEEeC-HHHHHHHHHHHHhcC----cccceEEEEccccccCCCCC-CCcC
Confidence 456799999999999999999987 7789999999 999999999886533 1358999999988652 34 6899
Q ss_pred EEEECCCccc--------hhHHHHHhcCCCcEEEEEec
Q psy10572 127 IIHVSPSYFT--------IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 127 ~v~~~~~~~~--------~~~~~~~~Lk~gG~l~~~~~ 156 (204)
+|++...+++ +++++.++|+|||++++...
T Consensus 251 ~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (363)
T 3dp7_A 251 AVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMET 288 (363)
T ss_dssp EEEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred EEEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEee
Confidence 9999888764 35788899999999988654
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.49 E-value=6.6e-13 Score=105.19 Aligned_cols=103 Identities=17% Similarity=0.239 Sum_probs=84.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEE
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDII 128 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 128 (204)
.++.+|||+|||+|..+..+++.. +..+++++|++ .+++.+++++...+ ..++++++.+|+.....+ ..||+|
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~-~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~~~~-~~~D~v 236 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHN-PNAEIFGVDWA-SVLEVAKENARIQG----VASRYHTIAGSAFEVDYG-NDYDLV 236 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHC-TTCEEEEEECH-HHHHHHHHHHHHHT----CGGGEEEEESCTTTSCCC-SCEEEE
T ss_pred CCCCEEEEECCCcCHHHHHHHHHC-CCCeEEEEecH-HHHHHHHHHHHhcC----CCcceEEEecccccCCCC-CCCcEE
Confidence 677899999999999999999987 66799999999 99999999887643 124699999998765444 349999
Q ss_pred EECCCccc--------hhHHHHHhcCCCcEEEEEecCC
Q psy10572 129 HVSPSYFT--------IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 129 ~~~~~~~~--------~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
++...+++ +++++.++|+|||++++.....
T Consensus 237 ~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~ 274 (335)
T 2r3s_A 237 LLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIP 274 (335)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred EEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecC
Confidence 99877765 3478889999999988876543
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.49 E-value=2.2e-13 Score=108.72 Aligned_cols=100 Identities=22% Similarity=0.230 Sum_probs=79.2
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
..++.+|||+|||+|.++..+++. +..+|+|+|+++ +++.|+++++.++ ..++++++.+|+.....+ ++||+
T Consensus 48 ~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~----l~~~v~~~~~d~~~~~~~-~~~D~ 119 (348)
T 2y1w_A 48 DFKDKIVLDVGCGSGILSFFAAQA--GARKIYAVEAST-MAQHAEVLVKSNN----LTDRIVVIPGKVEEVSLP-EQVDI 119 (348)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHT--TCSEEEEEECST-HHHHHHHHHHHTT----CTTTEEEEESCTTTCCCS-SCEEE
T ss_pred cCCcCEEEEcCCCccHHHHHHHhC--CCCEEEEECCHH-HHHHHHHHHHHcC----CCCcEEEEEcchhhCCCC-CceeE
Confidence 467889999999999999999886 335999999996 8899998887643 125799999998765443 57999
Q ss_pred EEECCCccc--------hhHHHHHhcCCCcEEEEEe
Q psy10572 128 IHVSPSYFT--------IPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 128 v~~~~~~~~--------~~~~~~~~Lk~gG~l~~~~ 155 (204)
|++.....+ .+..+.++|+|||.+++..
T Consensus 120 Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 155 (348)
T 2y1w_A 120 IISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTI 155 (348)
T ss_dssp EEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESCE
T ss_pred EEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEec
Confidence 999876432 2356679999999998654
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.49 E-value=6.2e-14 Score=107.70 Aligned_cols=108 Identities=19% Similarity=0.111 Sum_probs=77.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCc--cc---------c-------------
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNS--EL---------L------------- 103 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~---------~------------- 103 (204)
..++.+|||||||+|.++..++... ..+|+|+|+|+.+++.|+++++.... ++ +
T Consensus 53 ~~~g~~vLDiGCG~G~~~~~~~~~~--~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~ 130 (263)
T 2a14_A 53 GLQGDTLIDIGSGPTIYQVLAACDS--FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEK 130 (263)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGGT--EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred CCCCceEEEeCCCccHHHHHHHHhh--hcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHH
Confidence 4577899999999998877665542 13799999999999999987654210 00 0
Q ss_pred CccceE-EEEecCCCC-CC---CCCCeeEEEECCCccc----------hhHHHHHhcCCCcEEEEEecC
Q psy10572 104 DQGRVQ-FVVWNGKHG-YE---REAPYDIIHVSPSYFT----------IPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 104 ~~~~~~-~~~~d~~~~-~~---~~~~~D~v~~~~~~~~----------~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
...++. ++.+|+... +. ..++||+|+++..+++ +++++.++|||||.|+++...
T Consensus 131 ~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~ 199 (263)
T 2a14_A 131 LRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTL 199 (263)
T ss_dssp HHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred HHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEee
Confidence 001344 888887763 21 2468999999987754 346788999999999998643
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.48 E-value=4.3e-13 Score=106.23 Aligned_cols=99 Identities=19% Similarity=0.177 Sum_probs=78.6
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
..++.+|||+|||+|.++..+++.. ..+|+|+|++ .+++.|++++..++ ..++++++.+|+.+...+.++||+
T Consensus 36 ~~~~~~VLDiGcGtG~ls~~la~~g--~~~v~~vD~s-~~~~~a~~~~~~~~----~~~~i~~~~~d~~~~~~~~~~~D~ 108 (328)
T 1g6q_1 36 LFKDKIVLDVGCGTGILSMFAAKHG--AKHVIGVDMS-SIIEMAKELVELNG----FSDKITLLRGKLEDVHLPFPKVDI 108 (328)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHTC--CSEEEEEESS-THHHHHHHHHHHTT----CTTTEEEEESCTTTSCCSSSCEEE
T ss_pred hcCCCEEEEecCccHHHHHHHHHCC--CCEEEEEChH-HHHHHHHHHHHHcC----CCCCEEEEECchhhccCCCCcccE
Confidence 4677899999999999999998862 3489999999 58999999987644 134799999998876555578999
Q ss_pred EEECCCcc---------chhHHHHHhcCCCcEEEE
Q psy10572 128 IHVSPSYF---------TIPQKLLDQLVPGGRMVM 153 (204)
Q Consensus 128 v~~~~~~~---------~~~~~~~~~Lk~gG~l~~ 153 (204)
|++..... .++..+.++|+|||+++.
T Consensus 109 Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 109 IISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp EEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred EEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 99875422 234666799999999973
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.5e-13 Score=107.31 Aligned_cols=108 Identities=19% Similarity=0.179 Sum_probs=82.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC-CCCCCeeE
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-EREAPYDI 127 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~ 127 (204)
..+.+|||+|||+|..+..+++.. +..+++++|+++.+++.|++++.... .....++++++.+|+.... ...++||+
T Consensus 89 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~~~~a~~~~~~~~-~~~~~~~v~~~~~D~~~~l~~~~~~fD~ 166 (296)
T 1inl_A 89 PNPKKVLIIGGGDGGTLREVLKHD-SVEKAILCEVDGLVIEAARKYLKQTS-CGFDDPRAEIVIANGAEYVRKFKNEFDV 166 (296)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTST-TCSEEEEEESCHHHHHHHHHHCHHHH-GGGGCTTEEEEESCHHHHGGGCSSCEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHhHhhc-cccCCCceEEEECcHHHHHhhCCCCceE
Confidence 455799999999999999999875 45699999999999999999875310 0012468999999975422 22467999
Q ss_pred EEECCCcc-----------chhHHHHHhcCCCcEEEEEecCC
Q psy10572 128 IHVSPSYF-----------TIPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 128 v~~~~~~~-----------~~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
|+++...+ .+++.+.++|+|||++++...+.
T Consensus 167 Ii~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~ 208 (296)
T 1inl_A 167 IIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDP 208 (296)
T ss_dssp EEEEC----------CCSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred EEEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccCc
Confidence 99876433 35688999999999999987654
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.48 E-value=2e-13 Score=105.52 Aligned_cols=108 Identities=21% Similarity=0.195 Sum_probs=84.5
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC-CCCCCeeE
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-EREAPYDI 127 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~ 127 (204)
..+.+|||+|||+|.++..+++.. +..+++++|+++.+++.|++++..... ....++++++.+|+.... ...++||+
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vEid~~~v~~ar~~~~~~~~-~~~~~rv~v~~~D~~~~l~~~~~~fD~ 151 (275)
T 1iy9_A 74 PNPEHVLVVGGGDGGVIREILKHP-SVKKATLVDIDGKVIEYSKKFLPSIAG-KLDDPRVDVQVDDGFMHIAKSENQYDV 151 (275)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCT-TCSEEEEEESCHHHHHHHHHHCHHHHT-TTTSTTEEEEESCSHHHHHTCCSCEEE
T ss_pred CCCCEEEEECCchHHHHHHHHhCC-CCceEEEEECCHHHHHHHHHHhHhhcc-ccCCCceEEEECcHHHHHhhCCCCeeE
Confidence 456799999999999999999874 456999999999999999998753100 012468999999976432 22468999
Q ss_pred EEECCCcc----------chhHHHHHhcCCCcEEEEEecCC
Q psy10572 128 IHVSPSYF----------TIPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 128 v~~~~~~~----------~~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
|+++...+ .+.+.+.++|+|||++++...+.
T Consensus 152 Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~~ 192 (275)
T 1iy9_A 152 IMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNP 192 (275)
T ss_dssp EEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCT
T ss_pred EEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCc
Confidence 99987653 36789999999999999986553
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=6.5e-13 Score=102.37 Aligned_cols=131 Identities=18% Similarity=0.208 Sum_probs=89.3
Q ss_pred cCCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcH----HHHHHHHHhCC---CceEEEEEcCHHHHHHHHHHhhhc
Q psy10572 26 GYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGY----LTACLAYMAGP---EGRVYGVEHVMELAESSIKNIDKG 98 (204)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~----~~~~l~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~ 98 (204)
+...+.-.+.....+.+.+.+. .+..+|||+|||+|. +++.+++..+. +.+|+|+|+|+.+++.|+++....
T Consensus 82 ~~t~FfRd~~~f~~l~~~llp~-~~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~ 160 (274)
T 1af7_A 82 NLTAFFREAHHFPILAEHARRR-HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRL 160 (274)
T ss_dssp CCCCTTTTTTHHHHHHHHHHHS-CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEG
T ss_pred cCccccCChHHHHHHHHHccCC-CCCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCch
Confidence 3334444445555555554432 345799999999998 66777776532 358999999999999999875210
Q ss_pred Cc--------------------c--c-c---CccceEEEEecCCCCCCC-CCCeeEEEECCCccc--------hhHHHHH
Q psy10572 99 NS--------------------E--L-L---DQGRVQFVVWNGKHGYER-EAPYDIIHVSPSYFT--------IPQKLLD 143 (204)
Q Consensus 99 ~~--------------------~--~-~---~~~~~~~~~~d~~~~~~~-~~~~D~v~~~~~~~~--------~~~~~~~ 143 (204)
.. . . + ...++.|.+.|+....++ .++||+|+|...+.+ +++.+.+
T Consensus 161 ~~~~~~~~~~~~~~f~~~~~~~~~~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~ 240 (274)
T 1af7_A 161 SELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVP 240 (274)
T ss_dssp GGGTTSCHHHHHHHEEECCTTSCSEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGG
T ss_pred hhhhcCCHHHHHHHhhccccCCCCceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHH
Confidence 00 0 0 0 013699999998874333 468999999877643 4578889
Q ss_pred hcCCCcEEEEEecC
Q psy10572 144 QLVPGGRMVMPVGE 157 (204)
Q Consensus 144 ~Lk~gG~l~~~~~~ 157 (204)
.|+|||+|++....
T Consensus 241 ~L~pgG~L~lg~sE 254 (274)
T 1af7_A 241 LLKPDGLLFAGHSE 254 (274)
T ss_dssp GEEEEEEEEECTTC
T ss_pred HhCCCcEEEEEecc
Confidence 99999999985443
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-13 Score=105.85 Aligned_cols=108 Identities=18% Similarity=0.113 Sum_probs=81.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCcc--c--------------c--------C
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSE--L--------------L--------D 104 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~--~--------------~--------~ 104 (204)
.++.+|||+|||+|.++..+++.. . .+++|+|+++.+++.+++++...... + . .
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~-~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 132 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACES-F-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKL 132 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGT-E-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhcc-c-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHh
Confidence 566799999999999998887754 2 48999999999999999887542100 0 0 0
Q ss_pred ccce-EEEEecCCCCCC-CC---CCeeEEEECCCcc----c------hhHHHHHhcCCCcEEEEEecCC
Q psy10572 105 QGRV-QFVVWNGKHGYE-RE---APYDIIHVSPSYF----T------IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 105 ~~~~-~~~~~d~~~~~~-~~---~~~D~v~~~~~~~----~------~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
..++ .+..+|+..... +. ++||+|++...++ + +++++.++|+|||.+++.....
T Consensus 133 ~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 201 (265)
T 2i62_A 133 RRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALK 201 (265)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred hhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCC
Confidence 0127 899999876432 34 7899999988776 3 4478889999999999987544
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-13 Score=107.86 Aligned_cols=106 Identities=19% Similarity=0.177 Sum_probs=75.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHh---CCCceE--EEEEcCHHHHHHHHHHhhhcCccccCccceEE--EEecCCCCC--
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMA---GPEGRV--YGVEHVMELAESSIKNIDKGNSELLDQGRVQF--VVWNGKHGY-- 119 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~---~~~~~v--~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~d~~~~~-- 119 (204)
.++.+|||||||+|.++..++..+ .+...+ +++|+|+.|++.|++++.... ..+++.+ ..++..+..
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~----~~~~v~~~~~~~~~~~~~~~ 126 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTS----NLENVKFAWHKETSSEYQSR 126 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCS----SCTTEEEEEECSCHHHHHHH
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhcc----CCCcceEEEEecchhhhhhh
Confidence 456799999999998776443322 144544 999999999999999876421 1234544 344432211
Q ss_pred ----CCCCCeeEEEECCCccc------hhHHHHHhcCCCcEEEEEecCC
Q psy10572 120 ----EREAPYDIIHVSPSYFT------IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 120 ----~~~~~~D~v~~~~~~~~------~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
++.++||+|++...+++ .++++.++|||||++++...+.
T Consensus 127 ~~~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 175 (292)
T 2aot_A 127 MLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSG 175 (292)
T ss_dssp HHTTTCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECT
T ss_pred hccccCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 24578999999998877 4578999999999999976554
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-12 Score=105.30 Aligned_cols=101 Identities=18% Similarity=0.179 Sum_probs=83.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
..+..+|||+|||+|..+..+++.. +..+++++|+ +.+++.+++++...+ ..++++++.+|+... .+. .||+
T Consensus 200 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~----l~~~v~~~~~d~~~~-~p~-~~D~ 271 (369)
T 3gwz_A 200 FSGAATAVDIGGGRGSLMAAVLDAF-PGLRGTLLER-PPVAEEARELLTGRG----LADRCEILPGDFFET-IPD-GADV 271 (369)
T ss_dssp CTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTT----CTTTEEEEECCTTTC-CCS-SCSE
T ss_pred CccCcEEEEeCCCccHHHHHHHHHC-CCCeEEEEcC-HHHHHHHHHhhhhcC----cCCceEEeccCCCCC-CCC-CceE
Confidence 3567899999999999999999987 7789999999 999999999887633 135799999998743 333 7999
Q ss_pred EEECCCccc--------hhHHHHHhcCCCcEEEEEec
Q psy10572 128 IHVSPSYFT--------IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 128 v~~~~~~~~--------~~~~~~~~Lk~gG~l~~~~~ 156 (204)
|++...+++ +++++.++|+|||++++...
T Consensus 272 v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~ 308 (369)
T 3gwz_A 272 YLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDN 308 (369)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEE
T ss_pred EEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 999888764 45788899999999998654
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=4.9e-13 Score=104.04 Aligned_cols=99 Identities=18% Similarity=0.188 Sum_probs=83.4
Q ss_pred CCc-ccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCc
Q psy10572 27 YGA-DISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQ 105 (204)
Q Consensus 27 ~~~-~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~ 105 (204)
+|+ ++..+.+...+++.+. +.++.+|||||||+|.++..+++.. .+|+++|+++.+++.+++++.. .
T Consensus 28 ~GQnfL~d~~i~~~Iv~~l~--~~~~~~VLEIG~G~G~lT~~La~~~---~~V~aVEid~~li~~a~~~~~~-------~ 95 (295)
T 3gru_A 28 LGQCFLIDKNFVNKAVESAN--LTKDDVVLEIGLGKGILTEELAKNA---KKVYVIEIDKSLEPYANKLKEL-------Y 95 (295)
T ss_dssp --CCEECCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCGGGHHHHHHHHHH-------C
T ss_pred cCccccCCHHHHHHHHHhcC--CCCcCEEEEECCCchHHHHHHHhcC---CEEEEEECCHHHHHHHHHHhcc-------C
Confidence 344 6678888999998887 7888999999999999999999974 3999999999999999998864 3
Q ss_pred cceEEEEecCCCCCCCCCCeeEEEECCCccch
Q psy10572 106 GRVQFVVWNGKHGYEREAPYDIIHVSPSYFTI 137 (204)
Q Consensus 106 ~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~ 137 (204)
++++++++|+.....+..+||.|++|.++...
T Consensus 96 ~~v~vi~gD~l~~~~~~~~fD~Iv~NlPy~is 127 (295)
T 3gru_A 96 NNIEIIWGDALKVDLNKLDFNKVVANLPYQIS 127 (295)
T ss_dssp SSEEEEESCTTTSCGGGSCCSEEEEECCGGGH
T ss_pred CCeEEEECchhhCCcccCCccEEEEeCccccc
Confidence 58999999988766665679999999887653
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.6e-13 Score=109.36 Aligned_cols=100 Identities=22% Similarity=0.195 Sum_probs=80.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
+.++.+|||+|||+|.++..+++.. ..+|+|+|++ .+++.|++++..++ ...+++++.+|+.+...+ ++||+
T Consensus 61 ~~~~~~VLDlGcGtG~ls~~la~~g--~~~V~gvD~s-~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~~~~-~~~D~ 132 (376)
T 3r0q_C 61 HFEGKTVLDVGTGSGILAIWSAQAG--ARKVYAVEAT-KMADHARALVKANN----LDHIVEVIEGSVEDISLP-EKVDV 132 (376)
T ss_dssp TTTTCEEEEESCTTTHHHHHHHHTT--CSEEEEEESS-TTHHHHHHHHHHTT----CTTTEEEEESCGGGCCCS-SCEEE
T ss_pred cCCCCEEEEeccCcCHHHHHHHhcC--CCEEEEEccH-HHHHHHHHHHHHcC----CCCeEEEEECchhhcCcC-CcceE
Confidence 4678899999999999999999873 2499999999 99999999987754 134699999998776555 78999
Q ss_pred EEECCCccc---------hhHHHHHhcCCCcEEEEEe
Q psy10572 128 IHVSPSYFT---------IPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 128 v~~~~~~~~---------~~~~~~~~Lk~gG~l~~~~ 155 (204)
|+++...+. ++..+.++|+|||++++..
T Consensus 133 Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~ 169 (376)
T 3r0q_C 133 IISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSH 169 (376)
T ss_dssp EEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSE
T ss_pred EEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEec
Confidence 999653221 4567779999999997743
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.47 E-value=2e-13 Score=110.35 Aligned_cols=104 Identities=16% Similarity=0.159 Sum_probs=80.9
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCC-CCCCe
Q psy10572 47 KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE-REAPY 125 (204)
Q Consensus 47 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~ 125 (204)
..+++.+|||+|||+|.++..+++.. +.|+++|+|+.+++.++++++.++ .. ..+.++|+..... ..+.|
T Consensus 211 ~~~~g~~VLDlg~GtG~~sl~~a~~g---a~V~avDis~~al~~a~~n~~~ng-----~~-~~~~~~D~~~~l~~~~~~f 281 (393)
T 4dmg_A 211 MVRPGERVLDVYSYVGGFALRAARKG---AYALAVDKDLEALGVLDQAALRLG-----LR-VDIRHGEALPTLRGLEGPF 281 (393)
T ss_dssp TCCTTCEEEEESCTTTHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHHT-----CC-CEEEESCHHHHHHTCCCCE
T ss_pred HhcCCCeEEEcccchhHHHHHHHHcC---CeEEEEECCHHHHHHHHHHHHHhC-----CC-CcEEEccHHHHHHHhcCCC
Confidence 34668999999999999999999864 359999999999999999998765 12 3466888654321 12349
Q ss_pred eEEEECCCc---------------cchhHHHHHhcCCCcEEEEEecCCC
Q psy10572 126 DIIHVSPSY---------------FTIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 126 D~v~~~~~~---------------~~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
|+|+++++. ..++..+.++|+|||+++++.++..
T Consensus 282 D~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~ 330 (393)
T 4dmg_A 282 HHVLLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYH 330 (393)
T ss_dssp EEEEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred CEEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 999999886 2355788899999999997666554
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.47 E-value=4e-13 Score=107.08 Aligned_cols=125 Identities=17% Similarity=0.162 Sum_probs=94.4
Q ss_pred CCcccCChHHHHHHHHHHhcc--CCCCCEEEEEcCCCcHHHHHHHHHhCCC----ceEEEEEcCHHHHHHHHHHhhhcCc
Q psy10572 27 YGADISSPHIHAQMLELLKDK--IKPGARILDIGSGSGYLTACLAYMAGPE----GRVYGVEHVMELAESSIKNIDKGNS 100 (204)
Q Consensus 27 ~~~~~~~~~~~~~~~~~l~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~----~~v~~vD~~~~~~~~a~~~~~~~~~ 100 (204)
.|.++++..+...+...+... ..++.+|||+|||+|.++..+++..... .+++|+|+++.+++.|+.++...+
T Consensus 105 ~g~~~TP~~i~~~~~~ll~~l~~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g- 183 (344)
T 2f8l_A 105 VNHQMTPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQR- 183 (344)
T ss_dssp GGGCCCCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHT-
T ss_pred cCcCCChHHHHHHHHHHHHHhcCCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCC-
Confidence 466666666655544444321 3456799999999999999998887321 689999999999999999987643
Q ss_pred cccCccceEEEEecCCCCCCCCCCeeEEEECCCccc------------------------hhHHHHHhcCCCcEEEEEec
Q psy10572 101 ELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFT------------------------IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 101 ~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~------------------------~~~~~~~~Lk~gG~l~~~~~ 156 (204)
. ++.+..+|..... ...+||+|++|+++.. +++.+.+.|+|||++++.++
T Consensus 184 ----~-~~~i~~~D~l~~~-~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p 257 (344)
T 2f8l_A 184 ----Q-KMTLLHQDGLANL-LVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP 257 (344)
T ss_dssp ----C-CCEEEESCTTSCC-CCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ----C-CceEEECCCCCcc-ccCCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 2 5788999976643 3468999999998522 46788899999999999885
Q ss_pred CC
Q psy10572 157 EP 158 (204)
Q Consensus 157 ~~ 158 (204)
+.
T Consensus 258 ~~ 259 (344)
T 2f8l_A 258 DA 259 (344)
T ss_dssp GG
T ss_pred ch
Confidence 43
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=8.4e-13 Score=106.29 Aligned_cols=116 Identities=21% Similarity=0.179 Sum_probs=89.2
Q ss_pred ChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEE
Q psy10572 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVV 112 (204)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 112 (204)
.+.+...++... ..++.+|||+|||+|.++..++... ..++++|+|+++.+++.|++++...+ ..+++++.+
T Consensus 203 ~~~la~~l~~~~---~~~~~~vLD~gCGsG~~~i~~a~~~-~~~~v~g~Dis~~~l~~A~~n~~~~g----l~~~i~~~~ 274 (373)
T 3tm4_A 203 KASIANAMIELA---ELDGGSVLDPMCGSGTILIELALRR-YSGEIIGIEKYRKHLIGAEMNALAAG----VLDKIKFIQ 274 (373)
T ss_dssp CHHHHHHHHHHH---TCCSCCEEETTCTTCHHHHHHHHTT-CCSCEEEEESCHHHHHHHHHHHHHTT----CGGGCEEEE
T ss_pred cHHHHHHHHHhh---cCCCCEEEEccCcCcHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHHcC----CCCceEEEE
Confidence 455555555544 5788899999999999999999876 45589999999999999999998754 125799999
Q ss_pred ecCCCCCCCCCCeeEEEECCCccc--------------hhHHHHHhcCCCcEEEEEecCC
Q psy10572 113 WNGKHGYEREAPYDIIHVSPSYFT--------------IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 113 ~d~~~~~~~~~~~D~v~~~~~~~~--------------~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
+|+.....+.++||+|++|+++.. +.+.+.++| +|.+++.+++.
T Consensus 275 ~D~~~~~~~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~~~ 332 (373)
T 3tm4_A 275 GDATQLSQYVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITTEK 332 (373)
T ss_dssp CCGGGGGGTCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE--EEEEEEEESCH
T ss_pred CChhhCCcccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEECCH
Confidence 998876655678999999988542 335667777 66666655544
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=2.5e-13 Score=106.36 Aligned_cols=107 Identities=16% Similarity=0.093 Sum_probs=82.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC-CCCCCeeE
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-EREAPYDI 127 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~ 127 (204)
..+.+|||+|||+|..+..+++.. +..+++++|+++.+++.|++++.... .....++++++.+|+.... ...++||+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~-~~~~~~rv~v~~~Da~~~l~~~~~~fD~ 171 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHP-SVESVVQCEIDEDVIQVSKKFLPGMA-IGYSSSKLTLHVGDGFEFMKQNQDAFDV 171 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHH-GGGGCTTEEEEESCHHHHHHTCSSCEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHhHHhh-cccCCCcEEEEECcHHHHHhhCCCCceE
Confidence 456799999999999999999875 55699999999999999999875410 0012368999999975421 23468999
Q ss_pred EEECCCcc----------chhHHHHHhcCCCcEEEEEecC
Q psy10572 128 IHVSPSYF----------TIPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 128 v~~~~~~~----------~~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
|+++...+ .+++.+.++|+|||++++...+
T Consensus 172 Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 211 (304)
T 2o07_A 172 IITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC 211 (304)
T ss_dssp EEEECC-----------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecCC
Confidence 99976542 3578999999999999997744
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=2.6e-13 Score=106.38 Aligned_cols=108 Identities=19% Similarity=0.146 Sum_probs=83.2
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCC--CCCCee
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE--REAPYD 126 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~D 126 (204)
.++.+|||+|||+|..+..+++.. +..+++++|+++.+++.+++++..... ....++++++.+|+..... ..++||
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~~~~~~-~~~~~~v~~~~~D~~~~~~~~~~~~fD 171 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHG-TVEHCDLVDIDGEVMEQSKQHFPQISR-SLADPRATVRVGDGLAFVRQTPDNTYD 171 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCT-TCCEEEEEESCHHHHHHHHHHCHHHHG-GGGCTTEEEEESCHHHHHHSSCTTCEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCC-CCCEEEEEECCHHHHHHHHHHhHHhhc-ccCCCcEEEEECcHHHHHHhccCCcee
Confidence 566899999999999999999875 456999999999999999998742100 0124689999999765332 357899
Q ss_pred EEEECCCcc----------chhHHHHHhcCCCcEEEEEecCC
Q psy10572 127 IIHVSPSYF----------TIPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 127 ~v~~~~~~~----------~~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
+|+++...+ .+++.+.++|+|||++++...+.
T Consensus 172 vIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~ 213 (304)
T 3bwc_A 172 VVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESI 213 (304)
T ss_dssp EEEEECC---------CCHHHHHHHHHHEEEEEEEEEEECCT
T ss_pred EEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCc
Confidence 999976543 35678899999999999987654
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.8e-12 Score=103.82 Aligned_cols=102 Identities=16% Similarity=0.179 Sum_probs=83.3
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
..++.+|||+|||+|.++..+++.. +..+++++|+ +.+++.+++++...+ ...+++++.+|+.....+. +|+
T Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~~~~~--~D~ 259 (359)
T 1x19_A 188 LDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKG----VADRMRGIAVDIYKESYPE--ADA 259 (359)
T ss_dssp CTTCCEEEEESCTTCHHHHHHHHHC-TTCEEEEEEC-GGGHHHHHHHHHHTT----CTTTEEEEECCTTTSCCCC--CSE
T ss_pred CCCCCEEEEECCcccHHHHHHHHHC-CCCeEEEEec-HHHHHHHHHHHHhcC----CCCCEEEEeCccccCCCCC--CCE
Confidence 4667899999999999999999987 6779999999 999999999887643 1246999999987664443 499
Q ss_pred EEECCCccc--------hhHHHHHhcCCCcEEEEEecC
Q psy10572 128 IHVSPSYFT--------IPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 128 v~~~~~~~~--------~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
|++...+++ +++++.++|+|||++++....
T Consensus 260 v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~ 297 (359)
T 1x19_A 260 VLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMV 297 (359)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEC
T ss_pred EEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecc
Confidence 999888765 347888999999999876643
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=8.7e-13 Score=106.08 Aligned_cols=101 Identities=24% Similarity=0.251 Sum_probs=83.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
..++.+|||+|||+|.++..+++.. +..+++++|+ +.+++.+++++...+ ...+++++.+|+.+.. + ..||+
T Consensus 180 ~~~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~~-~-~~~D~ 251 (374)
T 1qzz_A 180 WSAVRHVLDVGGGNGGMLAAIALRA-PHLRGTLVEL-AGPAERARRRFADAG----LADRVTVAEGDFFKPL-P-VTADV 251 (374)
T ss_dssp CTTCCEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTT----CTTTEEEEECCTTSCC-S-CCEEE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHC-CCCEEEEEeC-HHHHHHHHHHHHhcC----CCCceEEEeCCCCCcC-C-CCCCE
Confidence 3567899999999999999999987 6779999999 999999999987643 1247999999987633 3 24999
Q ss_pred EEECCCccc--------hhHHHHHhcCCCcEEEEEec
Q psy10572 128 IHVSPSYFT--------IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 128 v~~~~~~~~--------~~~~~~~~Lk~gG~l~~~~~ 156 (204)
|++...+++ +++++.++|+|||++++...
T Consensus 252 v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (374)
T 1qzz_A 252 VLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR 288 (374)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 999888764 45778899999999988665
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.6e-12 Score=103.46 Aligned_cols=102 Identities=9% Similarity=0.049 Sum_probs=83.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCC--CCCCee
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE--REAPYD 126 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~D 126 (204)
.++.+|||+| |+|.++..+++.. +..+++++|+++.+++.|++++...+ ..+++++.+|+..... ..++||
T Consensus 171 ~~~~~VLDlG-G~G~~~~~la~~~-~~~~v~~vDi~~~~l~~a~~~~~~~g-----~~~v~~~~~D~~~~l~~~~~~~fD 243 (373)
T 2qm3_A 171 LENKDIFVLG-DDDLTSIALMLSG-LPKRIAVLDIDERLTKFIEKAANEIG-----YEDIEIFTFDLRKPLPDYALHKFD 243 (373)
T ss_dssp STTCEEEEES-CTTCHHHHHHHHT-CCSEEEEECSCHHHHHHHHHHHHHHT-----CCCEEEECCCTTSCCCTTTSSCBS
T ss_pred CCCCEEEEEC-CCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcC-----CCCEEEEEChhhhhchhhccCCcc
Confidence 3578999999 9999999998875 55699999999999999999988744 2379999999877322 235899
Q ss_pred EEEECCCccc-----hhHHHHHhcCCCc-EEEEEecC
Q psy10572 127 IIHVSPSYFT-----IPQKLLDQLVPGG-RMVMPVGE 157 (204)
Q Consensus 127 ~v~~~~~~~~-----~~~~~~~~Lk~gG-~l~~~~~~ 157 (204)
+|++++++.. +++.+.++|+||| .+++++..
T Consensus 244 ~Vi~~~p~~~~~~~~~l~~~~~~LkpgG~~~~~~~~~ 280 (373)
T 2qm3_A 244 TFITDPPETLEAIRAFVGRGIATLKGPRCAGYFGITR 280 (373)
T ss_dssp EEEECCCSSHHHHHHHHHHHHHTBCSTTCEEEEEECT
T ss_pred EEEECCCCchHHHHHHHHHHHHHcccCCeEEEEEEec
Confidence 9999988753 5678899999999 44666665
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=3e-13 Score=96.99 Aligned_cols=96 Identities=19% Similarity=0.280 Sum_probs=77.5
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC--------
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-------- 119 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-------- 119 (204)
+.++.+|||+|||+|.++..+++..++..+++++|+++ +++. .+++++.+|+....
T Consensus 20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~---------------~~~~~~~~d~~~~~~~~~~~~~ 83 (180)
T 1ej0_A 20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI---------------VGVDFLQGDFRDELVMKALLER 83 (180)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC---------------TTEEEEESCTTSHHHHHHHHHH
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc---------------CcEEEEEcccccchhhhhhhcc
Confidence 57788999999999999999999864557999999998 5321 46889999977653
Q ss_pred CCCCCeeEEEECCCcc-----------------chhHHHHHhcCCCcEEEEEecCCC
Q psy10572 120 EREAPYDIIHVSPSYF-----------------TIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 120 ~~~~~~D~v~~~~~~~-----------------~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
.+.++||+|+++.+++ .+++.+.++|+|||.+++.++...
T Consensus 84 ~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~ 140 (180)
T 1ej0_A 84 VGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGE 140 (180)
T ss_dssp HTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESST
T ss_pred CCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCC
Confidence 4457899999987653 345788899999999999887654
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.45 E-value=6.6e-13 Score=103.15 Aligned_cols=95 Identities=19% Similarity=0.245 Sum_probs=78.1
Q ss_pred cCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEE
Q psy10572 31 ISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQF 110 (204)
Q Consensus 31 ~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 110 (204)
+..+.+...+++.+. +.++.+|||+|||+|.++..+++.. .+++++|+++.+++.+++++...+ ..+++++
T Consensus 11 l~d~~i~~~i~~~~~--~~~~~~VLDiG~G~G~lt~~L~~~~---~~v~~vD~~~~~~~~a~~~~~~~~----~~~~v~~ 81 (285)
T 1zq9_A 11 LKNPLIINSIIDKAA--LRPTDVVLEVGPGTGNMTVKLLEKA---KKVVACELDPRLVAELHKRVQGTP----VASKLQV 81 (285)
T ss_dssp ECCHHHHHHHHHHTC--CCTTCEEEEECCTTSTTHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTST----TGGGEEE
T ss_pred cCCHHHHHHHHHhcC--CCCCCEEEEEcCcccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHhcC----CCCceEE
Confidence 357778888888876 6788899999999999999999975 399999999999999999876532 1257999
Q ss_pred EEecCCCCCCCCCCeeEEEECCCccc
Q psy10572 111 VVWNGKHGYEREAPYDIIHVSPSYFT 136 (204)
Q Consensus 111 ~~~d~~~~~~~~~~~D~v~~~~~~~~ 136 (204)
+++|+.....+ +||+|+++.++..
T Consensus 82 ~~~D~~~~~~~--~fD~vv~nlpy~~ 105 (285)
T 1zq9_A 82 LVGDVLKTDLP--FFDTCVANLPYQI 105 (285)
T ss_dssp EESCTTTSCCC--CCSEEEEECCGGG
T ss_pred EEcceecccch--hhcEEEEecCccc
Confidence 99998765443 6999999988754
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.3e-12 Score=103.46 Aligned_cols=101 Identities=17% Similarity=0.091 Sum_probs=83.2
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEE
Q psy10572 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIH 129 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 129 (204)
+..+|||+|||+|..+..+++.. +..+++++|+ +.+++.+++++...+ ..++++++.+|+... .+. +||+|+
T Consensus 169 ~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~-~p~-~~D~v~ 240 (332)
T 3i53_A 169 ALGHVVDVGGGSGGLLSALLTAH-EDLSGTVLDL-QGPASAAHRRFLDTG----LSGRAQVVVGSFFDP-LPA-GAGGYV 240 (332)
T ss_dssp GGSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTT----CTTTEEEEECCTTSC-CCC-SCSEEE
T ss_pred CCCEEEEeCCChhHHHHHHHHHC-CCCeEEEecC-HHHHHHHHHhhhhcC----cCcCeEEecCCCCCC-CCC-CCcEEE
Confidence 45799999999999999999988 6779999999 999999999887633 135799999998743 333 799999
Q ss_pred ECCCccc--------hhHHHHHhcCCCcEEEEEecCC
Q psy10572 130 VSPSYFT--------IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 130 ~~~~~~~--------~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
+...+++ +++++.++|+|||++++.....
T Consensus 241 ~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~ 277 (332)
T 3i53_A 241 LSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVA 277 (332)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCC
T ss_pred EehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecC
Confidence 9888765 4568889999999999976543
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.45 E-value=3e-13 Score=105.11 Aligned_cols=117 Identities=11% Similarity=0.079 Sum_probs=78.4
Q ss_pred HHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCcc--c---------c-C
Q psy10572 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSE--L---------L-D 104 (204)
Q Consensus 37 ~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~--~---------~-~ 104 (204)
...+.+.+.....++.+|||+|||+|..+..++.. ...+|+|+|+|+.+++.|++++...... + . .
T Consensus 58 ~~~l~~~l~~~~~~~~~vLDiGcG~G~~~~l~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~ 135 (289)
T 2g72_A 58 LRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACS--HFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEG 135 (289)
T ss_dssp HHHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGG--GCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHC
T ss_pred HHHHHHHhCCCCCCCCeEEEECCCcChHHHHhhcc--CCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcC
Confidence 34445555422246789999999999955444332 2349999999999999998865431000 0 0 0
Q ss_pred -------------ccceEEEEecCCC-CC-----CCCCCeeEEEECCCccc----------hhHHHHHhcCCCcEEEEEe
Q psy10572 105 -------------QGRVQFVVWNGKH-GY-----EREAPYDIIHVSPSYFT----------IPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 105 -------------~~~~~~~~~d~~~-~~-----~~~~~~D~v~~~~~~~~----------~~~~~~~~Lk~gG~l~~~~ 155 (204)
...+.++.+|+.. .+ .+.++||+|+++..+++ +++++.++|||||+|++..
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~ 215 (289)
T 2g72_A 136 KGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIG 215 (289)
T ss_dssp SCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred cccchhhhHHHHHhhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 0125677778765 22 23456999999988765 2467889999999999964
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=4.1e-13 Score=108.55 Aligned_cols=106 Identities=18% Similarity=0.235 Sum_probs=83.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCC----CCCC
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE----REAP 124 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~ 124 (204)
.++.+|||+|||+|.++..+++.. ..+|+++|+|+.+++.|+++++.++. ...+++++.+|+.+... ...+
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~g--a~~V~~vD~s~~al~~A~~N~~~n~~---~~~~v~~~~~D~~~~l~~~~~~~~~ 285 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGG--AMATTSVDLAKRSRALSLAHFEANHL---DMANHQLVVMDVFDYFKYARRHHLT 285 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTT--BSEEEEEESCTTHHHHHHHHHHHTTC---CCTTEEEEESCHHHHHHHHHHTTCC
T ss_pred cCCCeEEEEeeccCHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHcCC---CccceEEEECCHHHHHHHHHHhCCC
Confidence 577899999999999999999853 23899999999999999999987541 11179999999764221 1357
Q ss_pred eeEEEECCCcc-----c----------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 125 YDIIHVSPSYF-----T----------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 125 ~D~v~~~~~~~-----~----------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
||+|+++++.. . ++..+.++|+|||++++++.+..
T Consensus 286 fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~ 335 (385)
T 2b78_A 286 YDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAAN 335 (385)
T ss_dssp EEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred ccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCc
Confidence 99999998773 1 23456799999999999887765
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=2.7e-13 Score=107.03 Aligned_cols=108 Identities=19% Similarity=0.171 Sum_probs=83.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC-CCCCCeeE
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-EREAPYDI 127 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~ 127 (204)
..+.+|||+|||+|..+..+++.. +..+++++|+++.+++.|++++.... .....++++++.+|+.... ...++||+
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDis~~~l~~ar~~~~~~~-~~~~~~~v~~~~~D~~~~l~~~~~~fDv 192 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNIS-CGYEDKRVNVFIEDASKFLENVTNTYDV 192 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTS-GGGGSTTEEEEESCHHHHHHHCCSCEEE
T ss_pred CCCCEEEEEcCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhc-cccCCCcEEEEEccHHHHHhhcCCCceE
Confidence 456799999999999999999875 45799999999999999999876420 0012468999999975422 12467999
Q ss_pred EEECCCc----------cchhHHHHHhcCCCcEEEEEecCC
Q psy10572 128 IHVSPSY----------FTIPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 128 v~~~~~~----------~~~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
|+++... ..+++.+.++|+|||++++...+.
T Consensus 193 Ii~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~ 233 (321)
T 2pt6_A 193 IIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESL 233 (321)
T ss_dssp EEEECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECCT
T ss_pred EEECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCc
Confidence 9987632 235688899999999999977554
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.44 E-value=5.4e-13 Score=109.81 Aligned_cols=125 Identities=16% Similarity=0.203 Sum_probs=98.8
Q ss_pred CCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhC------------CCceEEEEEcCHHHHHHHHHH
Q psy10572 27 YGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAG------------PEGRVYGVEHVMELAESSIKN 94 (204)
Q Consensus 27 ~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~------------~~~~v~~vD~~~~~~~~a~~~ 94 (204)
.|.+++++.+...+++.+. ..++.+|+|+|||+|.+...+++.+. ....++|+|+++.+++.|+.+
T Consensus 150 ~G~fyTP~~v~~~mv~~l~--~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~n 227 (445)
T 2okc_A 150 AGQYFTPRPLIQAMVDCIN--PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMN 227 (445)
T ss_dssp CGGGCCCHHHHHHHHHHHC--CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHH
T ss_pred CCcccCcHHHHHHHHHHhC--CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHH
Confidence 4678888888888888886 56778999999999999988887641 124799999999999999998
Q ss_pred hhhcCccccCccceEEEEecCCCCCCCCCCeeEEEECCCccc-----------------------hhHHHHHhcCCCcEE
Q psy10572 95 IDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFT-----------------------IPQKLLDQLVPGGRM 151 (204)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~-----------------------~~~~~~~~Lk~gG~l 151 (204)
+...+ ....++.+.++|....... .+||+|++|+++.. +++.+.+.|+|||++
T Consensus 228 l~l~g---~~~~~~~i~~gD~l~~~~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~ 303 (445)
T 2okc_A 228 LYLHG---IGTDRSPIVCEDSLEKEPS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRA 303 (445)
T ss_dssp HHHTT---CCSSCCSEEECCTTTSCCS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEE
T ss_pred HHHhC---CCcCCCCEeeCCCCCCccc-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEE
Confidence 87644 1111567889997765433 48999999988742 367888999999999
Q ss_pred EEEecC
Q psy10572 152 VMPVGE 157 (204)
Q Consensus 152 ~~~~~~ 157 (204)
.+.+++
T Consensus 304 a~V~p~ 309 (445)
T 2okc_A 304 AVVLPD 309 (445)
T ss_dssp EEEEEH
T ss_pred EEEECC
Confidence 998864
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.9e-13 Score=105.98 Aligned_cols=105 Identities=20% Similarity=0.170 Sum_probs=81.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCcccc-------CccceEEEEecCCCCCCC
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELL-------DQGRVQFVVWNGKHGYER 121 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~~d~~~~~~~ 121 (204)
..+.+|||+|||+|.++..+++. +..+++++|+++.+++.|++++ ... ..+ ..++++++.+|+......
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~--~~~~v~~vDid~~~i~~ar~~~-~~~-~~l~~~~~~~~~~~v~~~~~D~~~~l~~ 149 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQH--DVDEVIMVEIDEDVIMVSKDLI-KID-NGLLEAMLNGKHEKAKLTIGDGFEFIKN 149 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS--CCSEEEEEESCHHHHHHHHHHT-CTT-TTHHHHHHTTCCSSEEEEESCHHHHHHH
T ss_pred CCCCeEEEEcCCcCHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHH-hhc-cccccccccCCCCcEEEEECchHHHhcc
Confidence 55679999999999999999887 4469999999999999999987 320 001 246899999996542111
Q ss_pred CCCeeEEEECCCc----------cchhHHHHHhcCCCcEEEEEecC
Q psy10572 122 EAPYDIIHVSPSY----------FTIPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 122 ~~~~D~v~~~~~~----------~~~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
.++||+|+++.+. ..+++.+.++|+|||++++...+
T Consensus 150 ~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~ 195 (281)
T 1mjf_A 150 NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGS 195 (281)
T ss_dssp CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred cCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence 4679999998764 23568889999999999997644
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=2.3e-13 Score=109.90 Aligned_cols=103 Identities=20% Similarity=0.237 Sum_probs=84.9
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCC----CCCCe
Q psy10572 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE----REAPY 125 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~ 125 (204)
++.+|||+|||+|.++..+++.. .+|+++|+++.+++.|++++..++ ..+++++.+|+..... ...+|
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~~---~~v~~vD~s~~~~~~a~~n~~~n~-----~~~~~~~~~d~~~~~~~~~~~~~~f 280 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALGF---REVVAVDSSAEALRRAEENARLNG-----LGNVRVLEANAFDLLRRLEKEGERF 280 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHHE---EEEEEEESCHHHHHHHHHHHHHTT-----CTTEEEEESCHHHHHHHHHHTTCCE
T ss_pred CCCeEEEeeeccCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcC-----CCCceEEECCHHHHHHHHHhcCCCe
Confidence 77899999999999999999873 489999999999999999998754 3459999999764322 14689
Q ss_pred eEEEECCCcc---------------chhHHHHHhcCCCcEEEEEecCCCC
Q psy10572 126 DIIHVSPSYF---------------TIPQKLLDQLVPGGRMVMPVGEPFK 160 (204)
Q Consensus 126 D~v~~~~~~~---------------~~~~~~~~~Lk~gG~l~~~~~~~~~ 160 (204)
|+|+++++.. .++..+.++|+|||++++++++...
T Consensus 281 D~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 330 (382)
T 1wxx_A 281 DLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHM 330 (382)
T ss_dssp EEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTS
T ss_pred eEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCC
Confidence 9999998762 2557788999999999998876553
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.44 E-value=3e-13 Score=106.30 Aligned_cols=107 Identities=16% Similarity=0.114 Sum_probs=82.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC-CCCCCeeE
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-EREAPYDI 127 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~ 127 (204)
..+.+|||+|||+|..+..+++.. +..+++++|+++.+++.|++++..... ....++++++.+|+.... ...++||+
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~Ar~~~~~~~~-~~~~~rv~~~~~D~~~~l~~~~~~fD~ 184 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHE-SVEKVTMCEIDEMVIDVAKKFLPGMSC-GFSHPKLDLFCGDGFEFLKNHKNEFDV 184 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCT-TCCEEEEECSCHHHHHHHHHHCTTTSG-GGGCTTEEEECSCHHHHHHHCTTCEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHHhcc-ccCCCCEEEEEChHHHHHHhcCCCceE
Confidence 456799999999999999999875 567999999999999999998754200 012468999999976422 13468999
Q ss_pred EEECCCc----------cchhHHHHHhcCCCcEEEEEecC
Q psy10572 128 IHVSPSY----------FTIPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 128 v~~~~~~----------~~~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
|+++... ..+++.+.++|+|||++++...+
T Consensus 185 Ii~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~~ 224 (314)
T 2b2c_A 185 IITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGES 224 (314)
T ss_dssp EEECCC-------------HHHHHHHHEEEEEEEEEECCC
T ss_pred EEEcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEECCC
Confidence 9998743 34668899999999999997644
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=3.2e-13 Score=106.30 Aligned_cols=108 Identities=20% Similarity=0.246 Sum_probs=82.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC-CCCCCeeE
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-EREAPYDI 127 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~ 127 (204)
..+.+|||+|||+|..+..+++.. +..+++++|+++.+++.|++++..........++++++.+|+.... ...++||+
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~ 154 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHP-TVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDV 154 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTST-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEE
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccE
Confidence 456799999999999999999875 4569999999999999999987531000011368999999976421 23468999
Q ss_pred EEECCCccc-------------hhHHHHHhcCCCcEEEEEecC
Q psy10572 128 IHVSPSYFT-------------IPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 128 v~~~~~~~~-------------~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
|+++...+. +++.+.++|+|||++++...+
T Consensus 155 Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 197 (314)
T 1uir_A 155 VIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGM 197 (314)
T ss_dssp EEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred EEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEccC
Confidence 999865433 457889999999999997643
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.43 E-value=8.8e-13 Score=98.40 Aligned_cols=91 Identities=20% Similarity=0.252 Sum_probs=75.3
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEE
Q psy10572 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIH 129 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 129 (204)
++.+|||+|||+|.++..++.. +++|+++.+++.++++ ++.++.+|+.....+.++||+|+
T Consensus 47 ~~~~vLDiG~G~G~~~~~l~~~-------~~vD~s~~~~~~a~~~------------~~~~~~~d~~~~~~~~~~fD~v~ 107 (219)
T 1vlm_A 47 PEGRGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKR------------GVFVLKGTAENLPLKDESFDFAL 107 (219)
T ss_dssp CSSCEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHT------------TCEEEECBTTBCCSCTTCEEEEE
T ss_pred CCCcEEEeCCCCCHHHHHHHHH-------hccCCCHHHHHHHHhc------------CCEEEEcccccCCCCCCCeeEEE
Confidence 4889999999999998876542 9999999999999864 46788888776656667899999
Q ss_pred ECCCccc------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 130 VSPSYFT------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 130 ~~~~~~~------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
+...+++ +++.+.++|+|||.+++..+...
T Consensus 108 ~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 143 (219)
T 1vlm_A 108 MVTTICFVDDPERALKEAYRILKKGGYLIVGIVDRE 143 (219)
T ss_dssp EESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEECSS
T ss_pred EcchHhhccCHHHHHHHHHHHcCCCcEEEEEEeCCc
Confidence 9887755 45788899999999999887653
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.4e-12 Score=104.12 Aligned_cols=100 Identities=16% Similarity=0.189 Sum_probs=82.4
Q ss_pred CCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCC-CCCCeeEEE
Q psy10572 51 GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE-REAPYDIIH 129 (204)
Q Consensus 51 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~v~ 129 (204)
+.+|||+|||+|.++..+++.. +..+++++|+ +.+++.+++++...+ ..++++++.+|+..... ..+.||+|+
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~~~~~~~~~D~v~ 253 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRH-PQLTGQIWDL-PTTRDAARKTIHAHD----LGGRVEFFEKNLLDARNFEGGAADVVM 253 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHC-TTCEEEEEEC-GGGHHHHHHHHHHTT----CGGGEEEEECCTTCGGGGTTCCEEEEE
T ss_pred CCEEEEeCCCcCHHHHHHHHhC-CCCeEEEEEC-HHHHHHHHHHHHhcC----CCCceEEEeCCcccCcccCCCCccEEE
Confidence 7899999999999999999987 6789999999 889999999877633 13579999999876541 235699999
Q ss_pred ECCCccc--------hhHHHHHhcCCCcEEEEEec
Q psy10572 130 VSPSYFT--------IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 130 ~~~~~~~--------~~~~~~~~Lk~gG~l~~~~~ 156 (204)
+...+++ +++++.++|+|||++++...
T Consensus 254 ~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (352)
T 3mcz_A 254 LNDCLHYFDAREAREVIGHAAGLVKPGGALLILTM 288 (352)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 9888765 44678899999999998654
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.2e-12 Score=104.07 Aligned_cols=101 Identities=14% Similarity=0.128 Sum_probs=84.6
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
+.++.+|||+|||+|.++.. ++ ...+++++|+|+.+++.+++++..++. ..+++++.+|+.... ++||+
T Consensus 193 ~~~~~~VLDlg~G~G~~~l~-a~---~~~~V~~vD~s~~ai~~a~~n~~~n~l----~~~v~~~~~D~~~~~---~~fD~ 261 (336)
T 2yx1_A 193 VSLNDVVVDMFAGVGPFSIA-CK---NAKKIYAIDINPHAIELLKKNIKLNKL----EHKIIPILSDVREVD---VKGNR 261 (336)
T ss_dssp CCTTCEEEETTCTTSHHHHH-TT---TSSEEEEEESCHHHHHHHHHHHHHTTC----TTTEEEEESCGGGCC---CCEEE
T ss_pred cCCCCEEEEccCccCHHHHh-cc---CCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEECChHHhc---CCCcE
Confidence 56889999999999999999 77 245999999999999999999988551 247999999987654 68999
Q ss_pred EEECCCcc--chhHHHHHhcCCCcEEEEEecCCC
Q psy10572 128 IHVSPSYF--TIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 128 v~~~~~~~--~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
|+++++.. .+++.+.++|+|||.+++..+...
T Consensus 262 Vi~dpP~~~~~~l~~~~~~L~~gG~l~~~~~~~~ 295 (336)
T 2yx1_A 262 VIMNLPKFAHKFIDKALDIVEEGGVIHYYTIGKD 295 (336)
T ss_dssp EEECCTTTGGGGHHHHHHHEEEEEEEEEEEEESS
T ss_pred EEECCcHhHHHHHHHHHHHcCCCCEEEEEEeecC
Confidence 99996653 477899999999999998766554
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.9e-12 Score=103.68 Aligned_cols=102 Identities=22% Similarity=0.252 Sum_probs=83.3
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
..++.+|||+|||+|.++..+++.. +..+++++|+ +.+++.+++++...+ ..++++++.+|+.+.. + ..||+
T Consensus 181 ~~~~~~vLDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~~-~-~~~D~ 252 (360)
T 1tw3_A 181 WTNVRHVLDVGGGKGGFAAAIARRA-PHVSATVLEM-AGTVDTARSYLKDEG----LSDRVDVVEGDFFEPL-P-RKADA 252 (360)
T ss_dssp CTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-TTHHHHHHHHHHHTT----CTTTEEEEECCTTSCC-S-SCEEE
T ss_pred CccCcEEEEeCCcCcHHHHHHHHhC-CCCEEEEecC-HHHHHHHHHHHHhcC----CCCceEEEeCCCCCCC-C-CCccE
Confidence 3567899999999999999999987 6779999999 999999999887643 1247999999987633 3 24999
Q ss_pred EEECCCccc--------hhHHHHHhcCCCcEEEEEecC
Q psy10572 128 IHVSPSYFT--------IPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 128 v~~~~~~~~--------~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
|++...+++ +++++.++|+|||++++....
T Consensus 253 v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 290 (360)
T 1tw3_A 253 IILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERD 290 (360)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred EEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence 999887754 457888999999999987654
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.3e-12 Score=103.59 Aligned_cols=99 Identities=19% Similarity=0.160 Sum_probs=82.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEE
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDII 128 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 128 (204)
.+ .+|||+|||+|..+..+++.. +..+++++|+ +.+++.+++++...+ ..++++++.+|+... .+ ++||+|
T Consensus 167 ~~-~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~-~~-~~~D~v 237 (334)
T 2ip2_A 167 RG-RSFVDVGGGSGELTKAILQAE-PSARGVMLDR-EGSLGVARDNLSSLL----AGERVSLVGGDMLQE-VP-SNGDIY 237 (334)
T ss_dssp TT-CEEEEETCTTCHHHHHHHHHC-TTCEEEEEEC-TTCTHHHHHHTHHHH----HTTSEEEEESCTTTC-CC-SSCSEE
T ss_pred CC-CEEEEeCCCchHHHHHHHHHC-CCCEEEEeCc-HHHHHHHHHHHhhcC----CCCcEEEecCCCCCC-CC-CCCCEE
Confidence 44 899999999999999999987 6779999999 999999999876532 124799999998763 33 579999
Q ss_pred EECCCccc--------hhHHHHHhcCCCcEEEEEec
Q psy10572 129 HVSPSYFT--------IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 129 ~~~~~~~~--------~~~~~~~~Lk~gG~l~~~~~ 156 (204)
++...+++ +++++.++|+|||++++...
T Consensus 238 ~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 273 (334)
T 2ip2_A 238 LLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIER 273 (334)
T ss_dssp EEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred EEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 99888763 45788899999999998754
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.43 E-value=5.6e-13 Score=108.14 Aligned_cols=107 Identities=19% Similarity=0.205 Sum_probs=85.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCC----CCCC
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE----REAP 124 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~ 124 (204)
.++.+|||+|||+|.++..+++.. ..+|+++|+++.+++.|++++..++. ..++++++.+|+..... ...+
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g--~~~V~~vD~s~~al~~a~~n~~~ngl---~~~~v~~~~~D~~~~~~~~~~~~~~ 293 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGG--CSQVVSVDTSQEALDIARQNVELNKL---DLSKAEFVRDDVFKLLRTYRDRGEK 293 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHTTC---CGGGEEEEESCHHHHHHHHHHTTCC
T ss_pred hCCCeEEEeeccCCHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHcCC---CccceEEEECCHHHHHHHHHhcCCC
Confidence 577899999999999999999863 34899999999999999999987541 01279999999764322 1357
Q ss_pred eeEEEECCCcc---------------chhHHHHHhcCCCcEEEEEecCCCC
Q psy10572 125 YDIIHVSPSYF---------------TIPQKLLDQLVPGGRMVMPVGEPFK 160 (204)
Q Consensus 125 ~D~v~~~~~~~---------------~~~~~~~~~Lk~gG~l~~~~~~~~~ 160 (204)
||+|+++++.. .++..+.+.|+|||++++++.+...
T Consensus 294 fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 344 (396)
T 3c0k_A 294 FDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGLM 344 (396)
T ss_dssp EEEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTTC
T ss_pred CCEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcC
Confidence 99999998762 2456788999999999998877653
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.43 E-value=2.6e-12 Score=100.72 Aligned_cols=121 Identities=14% Similarity=0.088 Sum_probs=89.9
Q ss_pred ChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEE
Q psy10572 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVV 112 (204)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 112 (204)
++.........+. +.++.+|||+|||+|..+..++...++.+.|+++|+++.+++.++++++..+ ..+++++.
T Consensus 87 Qd~~s~l~~~~l~--~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g-----~~~v~~~~ 159 (309)
T 2b9e_A 87 QDRASCLPAMLLD--PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAG-----VSCCELAE 159 (309)
T ss_dssp CCTGGGHHHHHHC--CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTT-----CCSEEEEE
T ss_pred ECHHHHHHHHHhC--CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC-----CCeEEEEe
Confidence 3333334445555 6788999999999999999999987556799999999999999999998744 46799999
Q ss_pred ecCCCCCCC---CCCeeEEEECCCccc------------------------------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 113 WNGKHGYER---EAPYDIIHVSPSYFT------------------------------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 113 ~d~~~~~~~---~~~~D~v~~~~~~~~------------------------------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
+|+...... ..+||.|++++++.. +++.+.++++ ||+|+.++++..
T Consensus 160 ~D~~~~~~~~~~~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~~ 238 (309)
T 2b9e_A 160 EDFLAVSPSDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSLC 238 (309)
T ss_dssp CCGGGSCTTCGGGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCCC
T ss_pred CChHhcCccccccCCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCCC
Confidence 997654322 147999999866511 1234445566 999998887764
Q ss_pred Cc
Q psy10572 160 KG 161 (204)
Q Consensus 160 ~~ 161 (204)
..
T Consensus 239 ~~ 240 (309)
T 2b9e_A 239 QE 240 (309)
T ss_dssp GG
T ss_pred hH
Confidence 33
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.43 E-value=7.1e-13 Score=106.58 Aligned_cols=146 Identities=18% Similarity=0.141 Sum_probs=101.9
Q ss_pred ChHHHHHHHHHHhccC-CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEE
Q psy10572 33 SPHIHAQMLELLKDKI-KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV 111 (204)
Q Consensus 33 ~~~~~~~~~~~l~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 111 (204)
++.....+...+...+ ..+.+|||+|||+|.++..+++.. .+|+|+|+++.+++.|+++++.++ .++++++
T Consensus 195 n~~~~~~l~~~~~~~~~~~~~~vLDl~cG~G~~~l~la~~~---~~V~gvd~~~~ai~~a~~n~~~ng-----~~~v~~~ 266 (369)
T 3bt7_A 195 NAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNF---DRVLATEIAKPSVAAAQYNIAANH-----IDNVQII 266 (369)
T ss_dssp BHHHHHHHHHHHHHHTTTCCSEEEEESCTTSHHHHHHGGGS---SEEEEECCCHHHHHHHHHHHHHTT-----CCSEEEE
T ss_pred CHHHHHHHHHHHHHHhhcCCCEEEEccCCCCHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcC-----CCceEEE
Confidence 4444455555544333 235789999999999999998854 399999999999999999998754 3589999
Q ss_pred EecCCCCC---CCC-------------CCeeEEEECCCccchhHHHHHhcCCCcEEEEEecCCCCcc-eEEEEeecCCce
Q psy10572 112 VWNGKHGY---ERE-------------APYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPFKGQ-NLTIIDKLADGY 174 (204)
Q Consensus 112 ~~d~~~~~---~~~-------------~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~~~~~~~~-~~~~~~~~~~~~ 174 (204)
.+|+.+.. ... .+||+|+++++...+...+.+.|+++|.++...+++.... .+..+. ..
T Consensus 267 ~~d~~~~~~~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~g~~~~~~~~l~~~g~ivyvsc~p~t~ard~~~l~----~~ 342 (369)
T 3bt7_A 267 RMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAYPRILYISCNPETLCKNLETLS----QT 342 (369)
T ss_dssp CCCSHHHHHHHSSCCCCTTGGGSCGGGCCEEEEEECCCTTCCCHHHHHHHTTSSEEEEEESCHHHHHHHHHHHH----HH
T ss_pred ECCHHHHHHHHhhccccccccccccccCCCCEEEECcCccccHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHh----hC
Confidence 99975421 111 3799999999988888888999999999888766654221 111111 12
Q ss_pred EEEeeeeeeeeeeeccc
Q psy10572 175 TIVTTVVRGVRTNPLYR 191 (204)
Q Consensus 175 ~~~~~~~~~~~~~pl~~ 191 (204)
+.+ ..+..+...|.+.
T Consensus 343 y~~-~~~~~~D~FP~T~ 358 (369)
T 3bt7_A 343 HKV-ERLALFDQFPYTH 358 (369)
T ss_dssp EEE-EEEEEECCSTTSS
T ss_pred cEE-EEEEeeccCCCCC
Confidence 555 5555555566543
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.43 E-value=9.7e-13 Score=98.35 Aligned_cols=96 Identities=23% Similarity=0.255 Sum_probs=78.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCC--CCCCCCCee
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKH--GYEREAPYD 126 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~D 126 (204)
.++.+|||+|||+|..+..+++. + .+++++|+++.+++.++++. ..++.+|+.. ...+.++||
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~-~--~~~~~~D~~~~~~~~~~~~~------------~~~~~~d~~~~~~~~~~~~fD 95 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKEN-G--TRVSGIEAFPEAAEQAKEKL------------DHVVLGDIETMDMPYEEEQFD 95 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTT-T--CEEEEEESSHHHHHHHHTTS------------SEEEESCTTTCCCCSCTTCEE
T ss_pred cCCCcEEEeCCCCCHHHHHHHhc-C--CeEEEEeCCHHHHHHHHHhC------------CcEEEcchhhcCCCCCCCccC
Confidence 57789999999999999999887 2 59999999999999987653 2567788764 334457899
Q ss_pred EEEECCCccc------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 127 IIHVSPSYFT------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 127 ~v~~~~~~~~------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
+|+++..+++ +++.+.++|+|||.+++.+++..
T Consensus 96 ~v~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~ 134 (230)
T 3cc8_A 96 CVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILASIPNVS 134 (230)
T ss_dssp EEEEESCGGGSSCHHHHHHHTGGGEEEEEEEEEEEECTT
T ss_pred EEEECChhhhcCCHHHHHHHHHHHcCCCCEEEEEeCCcc
Confidence 9999887765 45788899999999999887643
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.42 E-value=5e-13 Score=108.46 Aligned_cols=106 Identities=22% Similarity=0.360 Sum_probs=85.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCC----CCC
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE----REA 123 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~ 123 (204)
.+++.+|||+|||+|.++..+++.. ..+++++|+++.+++.|++++..++. ..+++++.+|+..... ...
T Consensus 215 ~~~~~~VLDl~~G~G~~~~~la~~g--~~~v~~vD~s~~~l~~a~~n~~~n~~----~~~v~~~~~d~~~~~~~~~~~~~ 288 (396)
T 2as0_A 215 VQPGDRVLDVFTYTGGFAIHAAIAG--ADEVIGIDKSPRAIETAKENAKLNGV----EDRMKFIVGSAFEEMEKLQKKGE 288 (396)
T ss_dssp CCTTCEEEETTCTTTHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHTTC----GGGEEEEESCHHHHHHHHHHTTC
T ss_pred hhCCCeEEEecCCCCHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHcCC----CccceEEECCHHHHHHHHHhhCC
Confidence 3478899999999999999999862 34899999999999999999987541 1279999999764321 246
Q ss_pred CeeEEEECCCcc---------------chhHHHHHhcCCCcEEEEEecCCC
Q psy10572 124 PYDIIHVSPSYF---------------TIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 124 ~~D~v~~~~~~~---------------~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
+||+|+++++.. .++..+.++|+|||++++++++..
T Consensus 289 ~fD~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 339 (396)
T 2as0_A 289 KFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQH 339 (396)
T ss_dssp CEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTT
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCC
Confidence 899999998762 245778899999999998877654
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.1e-12 Score=105.29 Aligned_cols=97 Identities=21% Similarity=0.219 Sum_probs=76.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEE
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDII 128 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 128 (204)
.+++.|||||||+|.+++.+++... .+|+|+|.++ +++.|+++++.++ ...++++++++..+...+ +++|+|
T Consensus 82 ~~~k~VLDvG~GtGiLs~~Aa~aGA--~~V~ave~s~-~~~~a~~~~~~n~----~~~~i~~i~~~~~~~~lp-e~~Dvi 153 (376)
T 4hc4_A 82 LRGKTVLDVGAGTGILSIFCAQAGA--RRVYAVEASA-IWQQAREVVRFNG----LEDRVHVLPGPVETVELP-EQVDAI 153 (376)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHTTC--SEEEEEECST-THHHHHHHHHHTT----CTTTEEEEESCTTTCCCS-SCEEEE
T ss_pred cCCCEEEEeCCCccHHHHHHHHhCC--CEEEEEeChH-HHHHHHHHHHHcC----CCceEEEEeeeeeeecCC-ccccEE
Confidence 4688999999999999998888652 4899999986 7899999888765 246799999998776555 689999
Q ss_pred EECCCcc---------chhHHHHHhcCCCcEEEE
Q psy10572 129 HVSPSYF---------TIPQKLLDQLVPGGRMVM 153 (204)
Q Consensus 129 ~~~~~~~---------~~~~~~~~~Lk~gG~l~~ 153 (204)
++..... .++....++|+|||.++-
T Consensus 154 vsE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP 187 (376)
T 4hc4_A 154 VSEWMGYGLLHESMLSSVLHARTKWLKEGGLLLP 187 (376)
T ss_dssp ECCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred EeecccccccccchhhhHHHHHHhhCCCCceECC
Confidence 9843221 234556689999999853
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.42 E-value=7.6e-13 Score=109.67 Aligned_cols=99 Identities=22% Similarity=0.245 Sum_probs=78.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEE
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDII 128 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 128 (204)
.++.+|||+|||+|.++..+++. +..+|+|+|+++ +++.|++++..++ ..++++++.+|+.+...+ ++||+|
T Consensus 157 ~~~~~VLDiGcGtG~la~~la~~--~~~~V~gvD~s~-~l~~A~~~~~~~g----l~~~v~~~~~d~~~~~~~-~~fD~I 228 (480)
T 3b3j_A 157 FKDKIVLDVGCGSGILSFFAAQA--GARKIYAVEAST-MAQHAEVLVKSNN----LTDRIVVIPGKVEEVSLP-EQVDII 228 (480)
T ss_dssp TTTCEEEEESCSTTHHHHHHHHT--TCSEEEEEECHH-HHHHHHHHHHHTT----CTTTEEEEESCTTTCCCS-SCEEEE
T ss_pred cCCCEEEEecCcccHHHHHHHHc--CCCEEEEEEcHH-HHHHHHHHHHHcC----CCCcEEEEECchhhCccC-CCeEEE
Confidence 56789999999999999988884 446999999998 9999999887744 125799999998764433 579999
Q ss_pred EECCCccc--------hhHHHHHhcCCCcEEEEEe
Q psy10572 129 HVSPSYFT--------IPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 129 ~~~~~~~~--------~~~~~~~~Lk~gG~l~~~~ 155 (204)
+++.+..+ .+..+.++|+|||.+++..
T Consensus 229 vs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~~~ 263 (480)
T 3b3j_A 229 ISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTI 263 (480)
T ss_dssp ECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEESCE
T ss_pred EEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 99876432 2345678999999998644
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=3.3e-12 Score=104.73 Aligned_cols=131 Identities=21% Similarity=0.187 Sum_probs=93.5
Q ss_pred cccccccCCcccC-ChHHHHHHHHHHhcc--CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhh
Q psy10572 20 IKSRQIGYGADIS-SPHIHAQMLELLKDK--IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNID 96 (204)
Q Consensus 20 ~~~~~~~~~~~~~-~~~~~~~~~~~l~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~ 96 (204)
+..+.+..+.++. ++.....+.+.+... +.++.+|||+|||+|.++..+++.. .+++|+|+|+.+++.|+.++.
T Consensus 253 g~~~~~~~~~f~q~n~~~~e~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~~---~~V~gvD~s~~al~~A~~n~~ 329 (433)
T 1uwv_A 253 GLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQA---ASVVGVEGVPALVEKGQQNAR 329 (433)
T ss_dssp TEEEECCSSSCCCSBHHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTS---SEEEEEESCHHHHHHHHHHHH
T ss_pred CEEEEECcccccccCHHHHHHHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHHH
Confidence 3444455555554 234344444443322 4567899999999999999999863 499999999999999999997
Q ss_pred hcCccccCccceEEEEecCCCCC----CCCCCeeEEEECCCccchhH--HHHHhcCCCcEEEEEecCC
Q psy10572 97 KGNSELLDQGRVQFVVWNGKHGY----EREAPYDIIHVSPSYFTIPQ--KLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 97 ~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~v~~~~~~~~~~~--~~~~~Lk~gG~l~~~~~~~ 158 (204)
.++ ..+++++.+|+.... ...++||+|+++++.....+ .....++|++++++++...
T Consensus 330 ~~~-----~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv~dPPr~g~~~~~~~l~~~~p~~ivyvsc~p~ 392 (433)
T 1uwv_A 330 LNG-----LQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPA 392 (433)
T ss_dssp HTT-----CCSEEEEECCTTSCCSSSGGGTTCCSEEEECCCTTCCHHHHHHHHHHCCSEEEEEESCHH
T ss_pred HcC-----CCceEEEECCHHHHhhhhhhhcCCCCEEEECCCCccHHHHHHHHHhcCCCeEEEEECChH
Confidence 754 358999999987632 23457999999998765432 1223368999999877544
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=6.2e-13 Score=103.19 Aligned_cols=108 Identities=19% Similarity=0.180 Sum_probs=83.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC-CCCCCeeE
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-EREAPYDI 127 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~ 127 (204)
.++.+|||+|||+|..+..+++.. +..+++++|+++.+++.+++++..... ....++++++.+|+.... ...++||+
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~~~~~~-~~~~~~v~~~~~D~~~~l~~~~~~fD~ 154 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNISC-GYEDKRVNVFIEDASKFLENVTNTYDV 154 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTSG-GGGSTTEEEEESCHHHHHHHCCSCEEE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHhHHhcc-ccCCCcEEEEECChHHHHHhCCCCceE
Confidence 456799999999999999998875 456999999999999999998754210 012468999999976432 12468999
Q ss_pred EEECCCc----------cchhHHHHHhcCCCcEEEEEecCC
Q psy10572 128 IHVSPSY----------FTIPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 128 v~~~~~~----------~~~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
|+++... ..+++.+.++|+|||++++...+.
T Consensus 155 Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~ 195 (283)
T 2i7c_A 155 IIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESL 195 (283)
T ss_dssp EEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred EEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECCCc
Confidence 9996532 235678899999999999986543
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.40 E-value=5.7e-12 Score=97.68 Aligned_cols=107 Identities=10% Similarity=0.136 Sum_probs=77.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEc-CHHHHHHHHHHhhhcCccccCc-----cceEEEEecCCCCC---
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEH-VMELAESSIKNIDKGNSELLDQ-----GRVQFVVWNGKHGY--- 119 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~-~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~--- 119 (204)
.++.+|||+|||+|.++..+++.. ..+|+++|+ ++.+++.++.++..+....... +++.+...++....
T Consensus 78 ~~~~~vLDlG~G~G~~~~~~a~~~--~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 155 (281)
T 3bzb_A 78 IAGKTVCELGAGAGLVSIVAFLAG--ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSL 155 (281)
T ss_dssp TTTCEEEETTCTTSHHHHHHHHTT--CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHH
T ss_pred cCCCeEEEecccccHHHHHHHHcC--CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHH
Confidence 577899999999999999888853 248999999 8999999999984331100111 36788866654321
Q ss_pred C---CCCCeeEEEECCCccc------hhHHHHHhcC---C--CcEEEEEecC
Q psy10572 120 E---REAPYDIIHVSPSYFT------IPQKLLDQLV---P--GGRMVMPVGE 157 (204)
Q Consensus 120 ~---~~~~~D~v~~~~~~~~------~~~~~~~~Lk---~--gG~l~~~~~~ 157 (204)
. ..++||+|++...+.+ +++.+.++|+ | ||++++.+..
T Consensus 156 ~~~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~ 207 (281)
T 3bzb_A 156 QRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALVTFTH 207 (281)
T ss_dssp HHHHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEEEECC
T ss_pred HhhccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEEEEEe
Confidence 1 2468999998555443 5678889999 9 9998876554
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=7.9e-13 Score=107.90 Aligned_cols=117 Identities=21% Similarity=0.236 Sum_probs=89.9
Q ss_pred ccCCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccC
Q psy10572 25 IGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLD 104 (204)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~ 104 (204)
-..|++.+++.+...+++.+. ..++.+|||+|||+|.++..+++..++..+++|+|+++.+++.|
T Consensus 16 ~~~g~~~TP~~l~~~~~~~~~--~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a------------- 80 (421)
T 2ih2_A 16 RSLGRVETPPEVVDFMVSLAE--APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP------------- 80 (421)
T ss_dssp -----CCCCHHHHHHHHHHCC--CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC-------------
T ss_pred ccCceEeCCHHHHHHHHHhhc--cCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC-------------
Confidence 345778888888888888775 34567999999999999999998764456999999999987665
Q ss_pred ccceEEEEecCCCCCCCCCCeeEEEECCCcc-----------------------------------chhHHHHHhcCCCc
Q psy10572 105 QGRVQFVVWNGKHGYEREAPYDIIHVSPSYF-----------------------------------TIPQKLLDQLVPGG 149 (204)
Q Consensus 105 ~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~-----------------------------------~~~~~~~~~Lk~gG 149 (204)
.++.++++|..... ..++||+|++|+++. .+++.+.++|+|||
T Consensus 81 -~~~~~~~~D~~~~~-~~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G 158 (421)
T 2ih2_A 81 -PWAEGILADFLLWE-PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGG 158 (421)
T ss_dssp -TTEEEEESCGGGCC-CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEE
T ss_pred -CCCcEEeCChhhcC-ccCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCC
Confidence 26788999977643 346899999997762 12467789999999
Q ss_pred EEEEEecCC
Q psy10572 150 RMVMPVGEP 158 (204)
Q Consensus 150 ~l~~~~~~~ 158 (204)
++++.++..
T Consensus 159 ~~~~i~p~~ 167 (421)
T 2ih2_A 159 VLVFVVPAT 167 (421)
T ss_dssp EEEEEEEGG
T ss_pred EEEEEEChH
Confidence 999988764
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.39 E-value=2.2e-11 Score=89.84 Aligned_cols=113 Identities=16% Similarity=0.155 Sum_probs=84.2
Q ss_pred cccCChHHHHHHHHHHhcc-CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccc
Q psy10572 29 ADISSPHIHAQMLELLKDK-IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGR 107 (204)
Q Consensus 29 ~~~~~~~~~~~~~~~l~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~ 107 (204)
++...+.....++..+... ..++.+|||+|||+|.++..+++.. ..+++|+|+++.+++.++.++...+ . +
T Consensus 27 ~~~~~~~~~~~l~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~-----~-~ 98 (207)
T 1wy7_A 27 QYRTPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLG--AKEVICVEVDKEAVDVLIENLGEFK-----G-K 98 (207)
T ss_dssp CCCCCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHTGGGT-----T-S
T ss_pred eecCchHHHHHHHHHHHHcCCCCcCEEEEeeCCCCHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHcC-----C-C
Confidence 3455666666666555422 3467899999999999999998863 2389999999999999999987643 2 7
Q ss_pred eEEEEecCCCCCCCCCCeeEEEECCCccc--------hhHHHHHhcCCCcEEEEE
Q psy10572 108 VQFVVWNGKHGYEREAPYDIIHVSPSYFT--------IPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 108 ~~~~~~d~~~~~~~~~~~D~v~~~~~~~~--------~~~~~~~~Lk~gG~l~~~ 154 (204)
++++.+|+.... .+||+|++++++.. +++.+.+.+ |+.+++.
T Consensus 99 ~~~~~~d~~~~~---~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~l--~~~~~~~ 148 (207)
T 1wy7_A 99 FKVFIGDVSEFN---SRVDIVIMNPPFGSQRKHADRPFLLKAFEIS--DVVYSIH 148 (207)
T ss_dssp EEEEESCGGGCC---CCCSEEEECCCCSSSSTTTTHHHHHHHHHHC--SEEEEEE
T ss_pred EEEEECchHHcC---CCCCEEEEcCCCccccCCchHHHHHHHHHhc--CcEEEEE
Confidence 999999977642 47999999988643 346677777 5544443
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.38 E-value=1.2e-12 Score=95.81 Aligned_cols=94 Identities=15% Similarity=0.163 Sum_probs=72.6
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCC-------
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE------- 120 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------- 120 (204)
++++.+|||+|||+|.++..+++. .++|+|+|+++.. ..++++++++|+.....
T Consensus 23 ~~~g~~VLDlG~G~G~~s~~la~~---~~~V~gvD~~~~~----------------~~~~v~~~~~D~~~~~~~~~~~~~ 83 (191)
T 3dou_A 23 VRKGDAVIEIGSSPGGWTQVLNSL---ARKIISIDLQEME----------------EIAGVRFIRCDIFKETIFDDIDRA 83 (191)
T ss_dssp SCTTCEEEEESCTTCHHHHHHTTT---CSEEEEEESSCCC----------------CCTTCEEEECCTTSSSHHHHHHHH
T ss_pred CCCCCEEEEEeecCCHHHHHHHHc---CCcEEEEeccccc----------------cCCCeEEEEccccCHHHHHHHHHH
Confidence 578899999999999999999887 3599999998741 12579999999775431
Q ss_pred -C---CCCeeEEEECCCcc-----------------chhHHHHHhcCCCcEEEEEecCCCC
Q psy10572 121 -R---EAPYDIIHVSPSYF-----------------TIPQKLLDQLVPGGRMVMPVGEPFK 160 (204)
Q Consensus 121 -~---~~~~D~v~~~~~~~-----------------~~~~~~~~~Lk~gG~l~~~~~~~~~ 160 (204)
. .++||+|+++.... ..++.+.++|||||.|++.++....
T Consensus 84 ~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~ 144 (191)
T 3dou_A 84 LREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDM 144 (191)
T ss_dssp HHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTH
T ss_pred hhcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCC
Confidence 1 13899999986431 1345677999999999998886654
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.38 E-value=1e-12 Score=100.79 Aligned_cols=103 Identities=15% Similarity=0.006 Sum_probs=81.5
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEE
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDII 128 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 128 (204)
..+.+|||+|||+|.++..+++. + .+++++|+++.+++.|++++.... .....++++++.+|+.... ++||+|
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~-~--~~v~~veid~~~i~~ar~~~~~~~-~~~~~~rv~~~~~D~~~~~---~~fD~I 143 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKY-D--THIDFVQADEKILDSFISFFPHFH-EVKNNKNFTHAKQLLDLDI---KKYDLI 143 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTS-S--CEEEEECSCHHHHGGGTTTSTTHH-HHHTCTTEEEESSGGGSCC---CCEEEE
T ss_pred CCCCEEEEEeCCcCHHHHHHHhC-C--CEEEEEECCHHHHHHHHHHHHhhc-cccCCCeEEEEechHHHHH---hhCCEE
Confidence 34579999999999999999887 3 699999999999999988764310 0012358999999987654 679999
Q ss_pred EECCCccc-hhHHHHHhcCCCcEEEEEecCC
Q psy10572 129 HVSPSYFT-IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 129 ~~~~~~~~-~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
+++...+. +.+.+.++|+|||++++...+.
T Consensus 144 i~d~~dp~~~~~~~~~~L~pgG~lv~~~~~~ 174 (262)
T 2cmg_A 144 FCLQEPDIHRIDGLKRMLKEDGVFISVAKHP 174 (262)
T ss_dssp EESSCCCHHHHHHHHTTEEEEEEEEEEEECT
T ss_pred EECCCChHHHHHHHHHhcCCCcEEEEEcCCc
Confidence 99865443 5789999999999999976554
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=3e-12 Score=110.60 Aligned_cols=106 Identities=17% Similarity=0.199 Sum_probs=85.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC-CCCCCeeE
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-EREAPYDI 127 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~ 127 (204)
.++.+|||+|||+|.++..++... ..+|+++|+|+.+++.++++++.++ +...+++++++|+.+.. ...++||+
T Consensus 538 ~~g~~VLDlg~GtG~~sl~aa~~g--a~~V~aVD~s~~al~~a~~N~~~ng---l~~~~v~~i~~D~~~~l~~~~~~fD~ 612 (703)
T 3v97_A 538 SKGKDFLNLFSYTGSATVHAGLGG--ARSTTTVDMSRTYLEWAERNLRLNG---LTGRAHRLIQADCLAWLREANEQFDL 612 (703)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHTT---CCSTTEEEEESCHHHHHHHCCCCEEE
T ss_pred cCCCcEEEeeechhHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHcC---CCccceEEEecCHHHHHHhcCCCccE
Confidence 468899999999999999998853 2479999999999999999998865 22247999999976532 22468999
Q ss_pred EEECCCcc-----------------chhHHHHHhcCCCcEEEEEecCCC
Q psy10572 128 IHVSPSYF-----------------TIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 128 v~~~~~~~-----------------~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
|+++++.. .++..+.++|+|||+|++++....
T Consensus 613 Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~~ 661 (703)
T 3v97_A 613 IFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKRG 661 (703)
T ss_dssp EEECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCTT
T ss_pred EEECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCcc
Confidence 99998752 135788899999999999888744
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=4.5e-12 Score=92.72 Aligned_cols=96 Identities=21% Similarity=0.237 Sum_probs=72.9
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCC--------ceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEE-EecCCCC
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPE--------GRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV-VWNGKHG 118 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~--------~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~d~~~~ 118 (204)
+.++.+|||+|||+|.++..+++..+.. ++++++|+++.. ...+++++ .+|+...
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~----------------~~~~~~~~~~~d~~~~ 83 (196)
T 2nyu_A 20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF----------------PLEGATFLCPADVTDP 83 (196)
T ss_dssp CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC----------------CCTTCEEECSCCTTSH
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc----------------cCCCCeEEEeccCCCH
Confidence 5788999999999999999999987432 699999999831 12467788 8886542
Q ss_pred C--------CCCCCeeEEEECCCcc-----------------chhHHHHHhcCCCcEEEEEecCCC
Q psy10572 119 Y--------EREAPYDIIHVSPSYF-----------------TIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 119 ~--------~~~~~~D~v~~~~~~~-----------------~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
. .+.++||+|+++...+ .+++.+.++|+|||.+++.++...
T Consensus 84 ~~~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 149 (196)
T 2nyu_A 84 RTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGS 149 (196)
T ss_dssp HHHHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCSG
T ss_pred HHHHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCc
Confidence 1 2235799999976432 345678899999999999887654
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=3e-12 Score=96.74 Aligned_cols=105 Identities=12% Similarity=0.037 Sum_probs=85.8
Q ss_pred HHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCC
Q psy10572 41 LELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE 120 (204)
Q Consensus 41 ~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 120 (204)
...+...+.+..+|||+|||+|.++..++... +..+|+++|+++.+++.++.++..++ .+..+...|.....+
T Consensus 123 Y~~i~~~i~~p~~VLDLGCG~GpLAl~~~~~~-p~a~y~a~DId~~~le~a~~~l~~~g------~~~~~~v~D~~~~~p 195 (281)
T 3lcv_B 123 YRELFRHLPRPNTLRDLACGLNPLAAPWMGLP-AETVYIASDIDARLVGFVDEALTRLN------VPHRTNVADLLEDRL 195 (281)
T ss_dssp HHHHGGGSCCCSEEEETTCTTGGGCCTTTTCC-TTCEEEEEESBHHHHHHHHHHHHHTT------CCEEEEECCTTTSCC
T ss_pred HHHHHhccCCCceeeeeccCccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHhcC------CCceEEEeeecccCC
Confidence 33344445667899999999999999998876 77899999999999999999998744 357889999776654
Q ss_pred CCCCeeEEEECCCccchhH-------HHHHhcCCCcEEEE
Q psy10572 121 REAPYDIIHVSPSYFTIPQ-------KLLDQLVPGGRMVM 153 (204)
Q Consensus 121 ~~~~~D~v~~~~~~~~~~~-------~~~~~Lk~gG~l~~ 153 (204)
.++||+++++..++++.+ ++...|+++|+++-
T Consensus 196 -~~~~DvaL~lkti~~Le~q~kg~g~~ll~aL~~~~vvVS 234 (281)
T 3lcv_B 196 -DEPADVTLLLKTLPCLETQQRGSGWEVIDIVNSPNIVVT 234 (281)
T ss_dssp -CSCCSEEEETTCHHHHHHHSTTHHHHHHHHSSCSEEEEE
T ss_pred -CCCcchHHHHHHHHHhhhhhhHHHHHHHHHhCCCCEEEe
Confidence 478999999999887542 68899999998865
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.36 E-value=3.5e-12 Score=99.70 Aligned_cols=96 Identities=19% Similarity=0.215 Sum_probs=75.2
Q ss_pred ccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceE
Q psy10572 30 DISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQ 109 (204)
Q Consensus 30 ~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~ 109 (204)
++..+.+...+++.+. +.++.+|||+|||+|.++..+++.. .+++|+|+++.+++.+++++...+ .++++
T Consensus 24 fl~~~~i~~~i~~~~~--~~~~~~VLDiG~G~G~lt~~La~~~---~~v~~vDi~~~~~~~a~~~~~~~~-----~~~v~ 93 (299)
T 2h1r_A 24 LLKNPGILDKIIYAAK--IKSSDIVLEIGCGTGNLTVKLLPLA---KKVITIDIDSRMISEVKKRCLYEG-----YNNLE 93 (299)
T ss_dssp EECCHHHHHHHHHHHC--CCTTCEEEEECCTTSTTHHHHTTTS---SEEEEECSCHHHHHHHHHHHHHTT-----CCCEE
T ss_pred eecCHHHHHHHHHhcC--CCCcCEEEEEcCcCcHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcC-----CCceE
Confidence 3357788888888876 6788899999999999999998863 499999999999999999886532 35799
Q ss_pred EEEecCCCCCCCCCCeeEEEECCCccch
Q psy10572 110 FVVWNGKHGYEREAPYDIIHVSPSYFTI 137 (204)
Q Consensus 110 ~~~~d~~~~~~~~~~~D~v~~~~~~~~~ 137 (204)
++.+|+..... .+||+|+++.++...
T Consensus 94 ~~~~D~~~~~~--~~~D~Vv~n~py~~~ 119 (299)
T 2h1r_A 94 VYEGDAIKTVF--PKFDVCTANIPYKIS 119 (299)
T ss_dssp C----CCSSCC--CCCSEEEEECCGGGH
T ss_pred EEECchhhCCc--ccCCEEEEcCCcccc
Confidence 99999876543 479999999887653
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.35 E-value=2.4e-11 Score=89.25 Aligned_cols=111 Identities=16% Similarity=0.162 Sum_probs=79.2
Q ss_pred CcccCChHHHHHHHHHHhcc-CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCcc
Q psy10572 28 GADISSPHIHAQMLELLKDK-IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQG 106 (204)
Q Consensus 28 ~~~~~~~~~~~~~~~~l~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~ 106 (204)
+.......+...++..+... ..++.+|||+|||+|.++..+++. +..+++|+|+++.+++.+++++.
T Consensus 28 ~~~~~~~~~~~~l~~~~~~~~~~~~~~vlD~gcG~G~~~~~l~~~--~~~~v~~vD~~~~~~~~a~~~~~---------- 95 (200)
T 1ne2_A 28 EQYPTDASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLL--GAESVTAFDIDPDAIETAKRNCG---------- 95 (200)
T ss_dssp --CCCCHHHHHHHHHHHHHHTSSBTSEEEEETCTTCHHHHHHHHT--TBSEEEEEESCHHHHHHHHHHCT----------
T ss_pred eecCCCHHHHHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHc--CCCEEEEEECCHHHHHHHHHhcC----------
Confidence 34445555556666555421 346789999999999999999886 23479999999999999998752
Q ss_pred ceEEEEecCCCCCCCCCCeeEEEECCCccc--------hhHHHHHhcCCCcEEEEEec
Q psy10572 107 RVQFVVWNGKHGYEREAPYDIIHVSPSYFT--------IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 107 ~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~--------~~~~~~~~Lk~gG~l~~~~~ 156 (204)
+++++.+|+.... ++||+|++++++++ +++.+.+.+ |.+++.+.
T Consensus 96 ~~~~~~~d~~~~~---~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~~---g~~~~~~~ 147 (200)
T 1ne2_A 96 GVNFMVADVSEIS---GKYDTWIMNPPFGSVVKHSDRAFIDKAFETS---MWIYSIGN 147 (200)
T ss_dssp TSEEEECCGGGCC---CCEEEEEECCCC-------CHHHHHHHHHHE---EEEEEEEE
T ss_pred CCEEEECcHHHCC---CCeeEEEECCCchhccCchhHHHHHHHHHhc---CcEEEEEc
Confidence 5789999977642 68999999998754 345666666 55555553
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=99.35 E-value=4e-12 Score=106.82 Aligned_cols=131 Identities=18% Similarity=0.185 Sum_probs=97.3
Q ss_pred cCCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCC-----------------CceEEEEEcCHHHH
Q psy10572 26 GYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGP-----------------EGRVYGVEHVMELA 88 (204)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~-----------------~~~v~~vD~~~~~~ 88 (204)
..|.+++++.+...|++.+. ..++.+|+|.+||+|.+...+.+.+.. ...++|+|+++.++
T Consensus 147 ~~G~fyTP~~iv~~mv~~l~--p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~ 224 (541)
T 2ar0_A 147 GAGQYFTPRPLIKTIIHLLK--PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTR 224 (541)
T ss_dssp ---CCCCCHHHHHHHHHHHC--CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHH
T ss_pred cCCeeeCCHHHHHHHHHHhc--cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHH
Confidence 35788888888888888886 567889999999999999888776421 13799999999999
Q ss_pred HHHHHHhhhcCccccCccceEEEEecCCCCC-CCCCCeeEEEECCCccc--------------------hhHHHHHhcCC
Q psy10572 89 ESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-EREAPYDIIHVSPSYFT--------------------IPQKLLDQLVP 147 (204)
Q Consensus 89 ~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v~~~~~~~~--------------------~~~~~~~~Lk~ 147 (204)
..|+.++...+..........+.++|..... ....+||+|++|+|+.. +++.+.+.|+|
T Consensus 225 ~lA~~nl~l~gi~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~ 304 (541)
T 2ar0_A 225 RLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHP 304 (541)
T ss_dssp HHHHHHHHTTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEE
T ss_pred HHHHHHHHHhCCCccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCC
Confidence 9999988764310000012677888866432 23467999999998732 55788999999
Q ss_pred CcEEEEEecCC
Q psy10572 148 GGRMVMPVGEP 158 (204)
Q Consensus 148 gG~l~~~~~~~ 158 (204)
||++.+.+++.
T Consensus 305 gGr~a~V~p~~ 315 (541)
T 2ar0_A 305 GGRAAVVVPDN 315 (541)
T ss_dssp EEEEEEEEEHH
T ss_pred CCEEEEEecCc
Confidence 99999988754
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.9e-13 Score=111.48 Aligned_cols=99 Identities=18% Similarity=0.184 Sum_probs=73.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEE
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDII 128 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 128 (204)
.++.+|||+|||+|.++..+++.. .+++|+|+|+.+++.|+++... .....+...+......+.++||+|
T Consensus 106 ~~~~~VLDiGcG~G~~~~~l~~~g---~~v~gvD~s~~~~~~a~~~~~~-------~~~~~~~~~~~~~l~~~~~~fD~I 175 (416)
T 4e2x_A 106 GPDPFIVEIGCNDGIMLRTIQEAG---VRHLGFEPSSGVAAKAREKGIR-------VRTDFFEKATADDVRRTEGPANVI 175 (416)
T ss_dssp SSSCEEEEETCTTTTTHHHHHHTT---CEEEEECCCHHHHHHHHTTTCC-------EECSCCSHHHHHHHHHHHCCEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHcC---CcEEEECCCHHHHHHHHHcCCC-------cceeeechhhHhhcccCCCCEEEE
Confidence 577899999999999999998864 3999999999999999876111 001111112211112334789999
Q ss_pred EECCCccch------hHHHHHhcCCCcEEEEEecC
Q psy10572 129 HVSPSYFTI------PQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 129 ~~~~~~~~~------~~~~~~~Lk~gG~l~~~~~~ 157 (204)
++...++++ ++++.++|||||++++.++.
T Consensus 176 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 210 (416)
T 4e2x_A 176 YAANTLCHIPYVQSVLEGVDALLAPDGVFVFEDPY 210 (416)
T ss_dssp EEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EECChHHhcCCHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 999988764 58999999999999998764
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=2.5e-12 Score=103.10 Aligned_cols=95 Identities=22% Similarity=0.265 Sum_probs=72.7
Q ss_pred CCCCCEEEEEcCC------CcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCC
Q psy10572 48 IKPGARILDIGSG------SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYER 121 (204)
Q Consensus 48 ~~~~~~vLdiG~G------~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 121 (204)
..++.+||||||| +|..+..+++...+.++|+|+|+++.+. . ..++++++++|.....+.
T Consensus 214 ~~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~-------~-------~~~rI~fv~GDa~dlpf~ 279 (419)
T 3sso_A 214 RNQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH-------V-------DELRIRTIQGDQNDAEFL 279 (419)
T ss_dssp TTSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG-------G-------CBTTEEEEECCTTCHHHH
T ss_pred cCCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh-------h-------cCCCcEEEEecccccchh
Confidence 4567899999999 7777777776543678999999999862 1 135899999998764433
Q ss_pred ------CCCeeEEEECCCccc-----hhHHHHHhcCCCcEEEEEec
Q psy10572 122 ------EAPYDIIHVSPSYFT-----IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 122 ------~~~~D~v~~~~~~~~-----~~~~~~~~Lk~gG~l~~~~~ 156 (204)
.++||+|+++..... .++++.++|||||++++...
T Consensus 280 ~~l~~~d~sFDlVisdgsH~~~d~~~aL~el~rvLKPGGvlVi~Dl 325 (419)
T 3sso_A 280 DRIARRYGPFDIVIDDGSHINAHVRTSFAALFPHVRPGGLYVIEDM 325 (419)
T ss_dssp HHHHHHHCCEEEEEECSCCCHHHHHHHHHHHGGGEEEEEEEEEECG
T ss_pred hhhhcccCCccEEEECCcccchhHHHHHHHHHHhcCCCeEEEEEec
Confidence 478999999864321 45788999999999999643
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.34 E-value=6e-12 Score=96.08 Aligned_cols=94 Identities=15% Similarity=0.150 Sum_probs=78.3
Q ss_pred ccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceE
Q psy10572 30 DISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQ 109 (204)
Q Consensus 30 ~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~ 109 (204)
++..+.+...+++.+. +.++.+|||||||+|.++..+++.. .+++++|+++.+++.+++++.. .++++
T Consensus 11 FL~d~~i~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~La~~~---~~V~avEid~~~~~~~~~~~~~-------~~~v~ 78 (255)
T 3tqs_A 11 FLHDSFVLQKIVSAIH--PQKTDTLVEIGPGRGALTDYLLTEC---DNLALVEIDRDLVAFLQKKYNQ-------QKNIT 78 (255)
T ss_dssp EECCHHHHHHHHHHHC--CCTTCEEEEECCTTTTTHHHHTTTS---SEEEEEECCHHHHHHHHHHHTT-------CTTEE
T ss_pred cccCHHHHHHHHHhcC--CCCcCEEEEEcccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHhh-------CCCcE
Confidence 4467788888998887 7888999999999999999999865 4999999999999999998764 35899
Q ss_pred EEEecCCCCCCC----CCCeeEEEECCCccc
Q psy10572 110 FVVWNGKHGYER----EAPYDIIHVSPSYFT 136 (204)
Q Consensus 110 ~~~~d~~~~~~~----~~~~D~v~~~~~~~~ 136 (204)
++++|+....++ ..+|| |++|.++.-
T Consensus 79 ~i~~D~~~~~~~~~~~~~~~~-vv~NlPY~i 108 (255)
T 3tqs_A 79 IYQNDALQFDFSSVKTDKPLR-VVGNLPYNI 108 (255)
T ss_dssp EEESCTTTCCGGGSCCSSCEE-EEEECCHHH
T ss_pred EEEcchHhCCHHHhccCCCeE-EEecCCccc
Confidence 999998865432 24688 888888854
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.34 E-value=7.3e-12 Score=99.89 Aligned_cols=98 Identities=14% Similarity=0.126 Sum_probs=74.7
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
+.++.+|||||||+|..+..+++.. +..+++++|+ +.++. +++..... ..++++++.+|+... .+ +||+
T Consensus 182 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~--~~~~~~~~----~~~~v~~~~~d~~~~-~p--~~D~ 250 (348)
T 3lst_A 182 FPATGTVADVGGGRGGFLLTVLREH-PGLQGVLLDR-AEVVA--RHRLDAPD----VAGRWKVVEGDFLRE-VP--HADV 250 (348)
T ss_dssp CCSSEEEEEETCTTSHHHHHHHHHC-TTEEEEEEEC-HHHHT--TCCCCCGG----GTTSEEEEECCTTTC-CC--CCSE
T ss_pred ccCCceEEEECCccCHHHHHHHHHC-CCCEEEEecC-HHHhh--cccccccC----CCCCeEEEecCCCCC-CC--CCcE
Confidence 4567899999999999999999988 6779999998 44444 22222111 135799999998733 33 7999
Q ss_pred EEECCCccc--------hhHHHHHhcCCCcEEEEEec
Q psy10572 128 IHVSPSYFT--------IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 128 v~~~~~~~~--------~~~~~~~~Lk~gG~l~~~~~ 156 (204)
|++...+++ +++++.++|||||++++...
T Consensus 251 v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~ 287 (348)
T 3lst_A 251 HVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDA 287 (348)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEEC
T ss_pred EEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 999888765 45788899999999998654
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.34 E-value=6.3e-14 Score=106.59 Aligned_cols=130 Identities=19% Similarity=0.172 Sum_probs=97.0
Q ss_pred CCc-ccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCc
Q psy10572 27 YGA-DISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQ 105 (204)
Q Consensus 27 ~~~-~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~ 105 (204)
+|+ +...+.....+++.+. +.++.+|||+|||+|.++..+++.. ++++|+|+++.+++.+++++.. .
T Consensus 7 ~gq~fl~~~~~~~~i~~~~~--~~~~~~VLDiG~G~G~~~~~l~~~~---~~v~~id~~~~~~~~a~~~~~~-------~ 74 (245)
T 1yub_A 7 YSQNFLTSEKVLNQIIKQLN--LKETDTVYEIGTGKGHLTTKLAKIS---KQVTSIELDSHLFNLSSEKLKL-------N 74 (245)
T ss_dssp SCCCBCCCTTTHHHHHHHCC--CCSSEEEEECSCCCSSCSHHHHHHS---SEEEESSSSCSSSSSSSCTTTT-------C
T ss_pred cCCCCCCCHHHHHHHHHhcC--CCCCCEEEEEeCCCCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHhcc-------C
Confidence 344 4566777778888776 6788899999999999999999875 4999999999999988877642 3
Q ss_pred cceEEEEecCCCCCCC-CCCeeEEEECCCccc-----------------hh----HHHHHhcCCCcEEEEEecCCCCcce
Q psy10572 106 GRVQFVVWNGKHGYER-EAPYDIIHVSPSYFT-----------------IP----QKLLDQLVPGGRMVMPVGEPFKGQN 163 (204)
Q Consensus 106 ~~~~~~~~d~~~~~~~-~~~~D~v~~~~~~~~-----------------~~----~~~~~~Lk~gG~l~~~~~~~~~~~~ 163 (204)
++++++.+|+.....+ .++| .|++|.++.. .+ +.+.++|+|||.+.+.+........
T Consensus 75 ~~v~~~~~D~~~~~~~~~~~f-~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~~~~~~~~~ 153 (245)
T 1yub_A 75 TRVTLIHQDILQFQFPNKQRY-KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLLHTQVSIQQ 153 (245)
T ss_dssp SEEEECCSCCTTTTCCCSSEE-EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHTTTTBCCCE
T ss_pred CceEEEECChhhcCcccCCCc-EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhheeheeEEE
Confidence 5799999998876544 3578 7888876532 12 5688999999999887765543344
Q ss_pred EEEEee
Q psy10572 164 LTIIDK 169 (204)
Q Consensus 164 ~~~~~~ 169 (204)
...+..
T Consensus 154 ~~~v~~ 159 (245)
T 1yub_A 154 LLKLPA 159 (245)
T ss_dssp EEEECC
T ss_pred EEEECc
Confidence 444333
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.34 E-value=3.1e-11 Score=97.63 Aligned_cols=120 Identities=14% Similarity=0.117 Sum_probs=89.0
Q ss_pred ChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCC-------------------------------------C
Q psy10572 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGP-------------------------------------E 75 (204)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~-------------------------------------~ 75 (204)
.+.+.+.++.... ..++..|||.+||+|.+++.++..... .
T Consensus 186 ~e~lAa~ll~l~~--~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~ 263 (393)
T 3k0b_A 186 KETMAAALVLLTS--WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQP 263 (393)
T ss_dssp CHHHHHHHHHHSC--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCC
T ss_pred cHHHHHHHHHHhC--CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCC
Confidence 4455555555544 577889999999999999988876521 1
Q ss_pred ceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEEECCCccc----------hhHHHHHhc
Q psy10572 76 GRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFT----------IPQKLLDQL 145 (204)
Q Consensus 76 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~----------~~~~~~~~L 145 (204)
.+++|+|+++.+++.|+.++...+ ...++++.++|+.....+ .+||+|++|+++.. +...+.+.|
T Consensus 264 ~~V~GvDid~~al~~Ar~Na~~~g----l~~~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~l 338 (393)
T 3k0b_A 264 LNIIGGDIDARLIEIAKQNAVEAG----LGDLITFRQLQVADFQTE-DEYGVVVANPPYGERLEDEEAVRQLYREMGIVY 338 (393)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHTT----CTTCSEEEECCGGGCCCC-CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCHHHHHHHHHHHHHcC----CCCceEEEECChHhCCCC-CCCCEEEECCCCccccCCchhHHHHHHHHHHHH
Confidence 469999999999999999998754 123699999998776544 58999999999842 223333444
Q ss_pred C--CCcEEEEEecCCC
Q psy10572 146 V--PGGRMVMPVGEPF 159 (204)
Q Consensus 146 k--~gG~l~~~~~~~~ 159 (204)
+ +||.+++.+....
T Consensus 339 k~~~g~~~~iit~~~~ 354 (393)
T 3k0b_A 339 KRMPTWSVYVLTSYEL 354 (393)
T ss_dssp HTCTTCEEEEEECCTT
T ss_pred hcCCCCEEEEEECCHH
Confidence 4 4999999887665
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.33 E-value=5.3e-11 Score=95.91 Aligned_cols=121 Identities=13% Similarity=0.101 Sum_probs=90.5
Q ss_pred ChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCC-------------------------------------C
Q psy10572 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGP-------------------------------------E 75 (204)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~-------------------------------------~ 75 (204)
.+.+.+.++.... ..++..++|.+||+|.+.+.++..... .
T Consensus 179 ~e~LAaall~l~~--~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~ 256 (384)
T 3ldg_A 179 KENMAAAIILLSN--WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQ 256 (384)
T ss_dssp CHHHHHHHHHHTT--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCC
T ss_pred cHHHHHHHHHHhC--CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCC
Confidence 4445555555554 578889999999999999988876521 1
Q ss_pred ceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEEECCCccc----------hhHHHHHhc
Q psy10572 76 GRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFT----------IPQKLLDQL 145 (204)
Q Consensus 76 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~----------~~~~~~~~L 145 (204)
.+++|+|+++.+++.|+.|+...+ ....+++.++|+.+...+ .+||+|++|+++.. +...+.+.|
T Consensus 257 ~~v~GvDid~~al~~Ar~Na~~~g----l~~~I~~~~~D~~~l~~~-~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~l 331 (384)
T 3ldg_A 257 LDISGFDFDGRMVEIARKNAREVG----LEDVVKLKQMRLQDFKTN-KINGVLISNPPYGERLLDDKAVDILYNEMGETF 331 (384)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHTT----CTTTEEEEECCGGGCCCC-CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCHHHHHHHHHHHHHcC----CCCceEEEECChHHCCcc-CCcCEEEECCchhhccCCHHHHHHHHHHHHHHH
Confidence 469999999999999999998754 123699999998876544 58999999999742 223444555
Q ss_pred CC--CcEEEEEecCCCC
Q psy10572 146 VP--GGRMVMPVGEPFK 160 (204)
Q Consensus 146 k~--gG~l~~~~~~~~~ 160 (204)
|+ ||.+++.+.....
T Consensus 332 k~~~g~~~~iit~~~~l 348 (384)
T 3ldg_A 332 APLKTWSQFILTNDTDF 348 (384)
T ss_dssp TTCTTSEEEEEESCTTH
T ss_pred hhCCCcEEEEEECCHHH
Confidence 55 9999998887653
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.9e-11 Score=97.60 Aligned_cols=120 Identities=16% Similarity=0.143 Sum_probs=88.6
Q ss_pred ChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhC-------------------------------------CC
Q psy10572 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAG-------------------------------------PE 75 (204)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-------------------------------------~~ 75 (204)
.+.+.+.++.... ..++..|||++||+|.+++.++.... ..
T Consensus 180 ~e~lAa~ll~~~~--~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~ 257 (385)
T 3ldu_A 180 RETLAAGLIYLTP--WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESK 257 (385)
T ss_dssp CHHHHHHHHHTSC--CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCC
T ss_pred cHHHHHHHHHhhC--CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCC
Confidence 3444444544443 56788999999999999999887641 11
Q ss_pred ceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEEECCCccc----------hhHHHHHhc
Q psy10572 76 GRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFT----------IPQKLLDQL 145 (204)
Q Consensus 76 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~----------~~~~~~~~L 145 (204)
.+++|+|+++.+++.|+.++..++ ...++++.++|+.+...+ .+||+|++|+++.. +...+.+.|
T Consensus 258 ~~V~GvDid~~ai~~Ar~Na~~~g----l~~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~l 332 (385)
T 3ldu_A 258 FKIYGYDIDEESIDIARENAEIAG----VDEYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELGYAF 332 (385)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHHT----CGGGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCHHHHHHHHHHHHHcC----CCCceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHH
Confidence 479999999999999999998754 124799999998775443 58999999999853 223344455
Q ss_pred CC--CcEEEEEecCCC
Q psy10572 146 VP--GGRMVMPVGEPF 159 (204)
Q Consensus 146 k~--gG~l~~~~~~~~ 159 (204)
++ |+.+++.+.+..
T Consensus 333 k~~~g~~~~iit~~~~ 348 (385)
T 3ldu_A 333 RKLKNWSYYLITSYED 348 (385)
T ss_dssp HTSBSCEEEEEESCTT
T ss_pred hhCCCCEEEEEECCHH
Confidence 55 889888887665
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=9.4e-12 Score=95.30 Aligned_cols=104 Identities=22% Similarity=0.244 Sum_probs=75.9
Q ss_pred CCEEEEEcCCC--cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC---C-C--C
Q psy10572 51 GARILDIGSGS--GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY---E-R--E 122 (204)
Q Consensus 51 ~~~vLdiG~G~--G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~-~--~ 122 (204)
...|||+|||. +..+..++....+.++|+++|.|+.|++.|+.++.... ..+++++++|+.... . + .
T Consensus 79 ~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~-----~~~~~~v~aD~~~~~~~l~~~~~~ 153 (277)
T 3giw_A 79 IRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTP-----EGRTAYVEADMLDPASILDAPELR 153 (277)
T ss_dssp CCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCS-----SSEEEEEECCTTCHHHHHTCHHHH
T ss_pred CCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCC-----CCcEEEEEecccChhhhhcccccc
Confidence 36999999996 33445555544478899999999999999999876421 247999999987531 0 0 1
Q ss_pred CCee-----EEEECCCccch---------hHHHHHhcCCCcEEEEEecCCC
Q psy10572 123 APYD-----IIHVSPSYFTI---------PQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 123 ~~~D-----~v~~~~~~~~~---------~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
+.|| .|+++..++++ +..+.+.|+|||+|+++.....
T Consensus 154 ~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d 204 (277)
T 3giw_A 154 DTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAE 204 (277)
T ss_dssp TTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCT
T ss_pred cccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCC
Confidence 3344 57788887653 4677788999999999876654
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.32 E-value=7e-12 Score=97.07 Aligned_cols=95 Identities=22% Similarity=0.241 Sum_probs=68.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEE-EecCCCC---CCCCCC
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV-VWNGKHG---YEREAP 124 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~d~~~~---~~~~~~ 124 (204)
.++.+|||+|||+|.++..+++.. ..+|+|+|+++.|++.+.++- +++... ..++... ..+..+
T Consensus 84 ~~g~~vLDiGcGTG~~t~~L~~~g--a~~V~aVDvs~~mL~~a~r~~----------~rv~~~~~~ni~~l~~~~l~~~~ 151 (291)
T 3hp7_A 84 VEDMITIDIGASTGGFTDVMLQNG--AKLVYAVDVGTNQLVWKLRQD----------DRVRSMEQYNFRYAEPVDFTEGL 151 (291)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTT--CSEEEEECSSSSCSCHHHHTC----------TTEEEECSCCGGGCCGGGCTTCC
T ss_pred ccccEEEecCCCccHHHHHHHhCC--CCEEEEEECCHHHHHHHHHhC----------cccceecccCceecchhhCCCCC
Confidence 356799999999999999998863 359999999999998854321 122222 1222211 123345
Q ss_pred eeEEEECCCccc---hhHHHHHhcCCCcEEEEEe
Q psy10572 125 YDIIHVSPSYFT---IPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 125 ~D~v~~~~~~~~---~~~~~~~~Lk~gG~l~~~~ 155 (204)
||+|+++..+.+ ++..+.++|+|||.+++.+
T Consensus 152 fD~v~~d~sf~sl~~vL~e~~rvLkpGG~lv~lv 185 (291)
T 3hp7_A 152 PSFASIDVSFISLNLILPALAKILVDGGQVVALV 185 (291)
T ss_dssp CSEEEECCSSSCGGGTHHHHHHHSCTTCEEEEEE
T ss_pred CCEEEEEeeHhhHHHHHHHHHHHcCcCCEEEEEE
Confidence 999998877654 5689999999999999964
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=9.9e-12 Score=95.57 Aligned_cols=93 Identities=17% Similarity=0.173 Sum_probs=78.5
Q ss_pred ccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceE
Q psy10572 30 DISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQ 109 (204)
Q Consensus 30 ~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~ 109 (204)
++..+.+...+++.+. +.++ +|||||||+|.++..+++.. .+++++|+++.+++.+++++.. .+++
T Consensus 29 fL~d~~i~~~Iv~~~~--~~~~-~VLEIG~G~G~lt~~L~~~~---~~V~avEid~~~~~~l~~~~~~--------~~v~ 94 (271)
T 3fut_A 29 FLVSEAHLRRIVEAAR--PFTG-PVFEVGPGLGALTRALLEAG---AEVTAIEKDLRLRPVLEETLSG--------LPVR 94 (271)
T ss_dssp EECCHHHHHHHHHHHC--CCCS-CEEEECCTTSHHHHHHHHTT---CCEEEEESCGGGHHHHHHHTTT--------SSEE
T ss_pred ccCCHHHHHHHHHhcC--CCCC-eEEEEeCchHHHHHHHHHcC---CEEEEEECCHHHHHHHHHhcCC--------CCEE
Confidence 4467888889999887 7788 99999999999999999975 4899999999999999988652 4799
Q ss_pred EEEecCCCCCCCC-CCeeEEEECCCccc
Q psy10572 110 FVVWNGKHGYERE-APYDIIHVSPSYFT 136 (204)
Q Consensus 110 ~~~~d~~~~~~~~-~~~D~v~~~~~~~~ 136 (204)
++++|+.....+. ..+|.|++|.++.-
T Consensus 95 vi~~D~l~~~~~~~~~~~~iv~NlPy~i 122 (271)
T 3fut_A 95 LVFQDALLYPWEEVPQGSLLVANLPYHI 122 (271)
T ss_dssp EEESCGGGSCGGGSCTTEEEEEEECSSC
T ss_pred EEECChhhCChhhccCccEEEecCcccc
Confidence 9999988665442 36899999998865
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.31 E-value=6.1e-11 Score=99.43 Aligned_cols=130 Identities=14% Similarity=0.058 Sum_probs=102.7
Q ss_pred CCcccCChHHHHHHHHHHhccC--CCCCEEEEEcCCCcHHHHHHHHHhC--CCceEEEEEcCHHHHHHHHHHhhhcCccc
Q psy10572 27 YGADISSPHIHAQMLELLKDKI--KPGARILDIGSGSGYLTACLAYMAG--PEGRVYGVEHVMELAESSIKNIDKGNSEL 102 (204)
Q Consensus 27 ~~~~~~~~~~~~~~~~~l~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~ 102 (204)
.|.+++++.+...|++.+.... .++.+|+|.+||+|.+...+.+.+. ....++|+|+++.+...|+.++..++
T Consensus 196 ~G~fyTP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~g--- 272 (542)
T 3lkd_A 196 AGEFYTPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHG--- 272 (542)
T ss_dssp CSSCCCCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTT---
T ss_pred CCeecccHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcC---
Confidence 5788899999999999887432 3677999999999999888888752 24589999999999999999987654
Q ss_pred cCccceEEEEecCCCC--C-CCCCCeeEEEECCCccc-----------------------------hhHHHHHhcC-CCc
Q psy10572 103 LDQGRVQFVVWNGKHG--Y-EREAPYDIIHVSPSYFT-----------------------------IPQKLLDQLV-PGG 149 (204)
Q Consensus 103 ~~~~~~~~~~~d~~~~--~-~~~~~~D~v~~~~~~~~-----------------------------~~~~~~~~Lk-~gG 149 (204)
....++.+.++|.... + ....+||+|++|+|+.. +++.+.+.|+ +||
T Consensus 273 i~~~~~~I~~gDtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gG 352 (542)
T 3lkd_A 273 VPIENQFLHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNG 352 (542)
T ss_dssp CCGGGEEEEESCTTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTC
T ss_pred CCcCccceEecceecccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCce
Confidence 1225688999997754 1 33578999999988621 3467889999 999
Q ss_pred EEEEEecCCC
Q psy10572 150 RMVMPVGEPF 159 (204)
Q Consensus 150 ~l~~~~~~~~ 159 (204)
++.+.++++.
T Consensus 353 r~a~VlP~g~ 362 (542)
T 3lkd_A 353 VMAIVLPHGV 362 (542)
T ss_dssp EEEEEEETHH
T ss_pred eEEEEecchH
Confidence 9999888663
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.31 E-value=7.2e-13 Score=99.91 Aligned_cols=111 Identities=19% Similarity=0.174 Sum_probs=68.5
Q ss_pred HHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEE-ecCC
Q psy10572 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVV-WNGK 116 (204)
Q Consensus 38 ~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~d~~ 116 (204)
..+++.+.. ..++.+|||+|||+|.++..+++.. ..+|+|+|+|+.+++.++++...... ....++.+.. .++.
T Consensus 26 ~~~L~~~~~-~~~g~~VLDiGcGtG~~t~~la~~g--~~~V~gvDis~~ml~~a~~~~~~~~~--~~~~~~~~~~~~~~~ 100 (232)
T 3opn_A 26 EKALKEFHL-EINGKTCLDIGSSTGGFTDVMLQNG--AKLVYALDVGTNQLAWKIRSDERVVV--MEQFNFRNAVLADFE 100 (232)
T ss_dssp HHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHTT--CSEEEEECSSCCCCCHHHHTCTTEEE--ECSCCGGGCCGGGCC
T ss_pred HHHHHHcCC-CCCCCEEEEEccCCCHHHHHHHhcC--CCEEEEEcCCHHHHHHHHHhCccccc--cccceEEEeCHhHcC
Confidence 344444431 2346699999999999999998873 23999999999999988765332100 0011222222 2211
Q ss_pred CCCCCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 117 HGYEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 117 ~~~~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
...+....||+++++ +..++.++.++|||||.+++.+
T Consensus 101 ~~~~d~~~~D~v~~~--l~~~l~~i~rvLkpgG~lv~~~ 137 (232)
T 3opn_A 101 QGRPSFTSIDVSFIS--LDLILPPLYEILEKNGEVAALI 137 (232)
T ss_dssp SCCCSEEEECCSSSC--GGGTHHHHHHHSCTTCEEEEEE
T ss_pred cCCCCEEEEEEEhhh--HHHHHHHHHHhccCCCEEEEEE
Confidence 111122234444433 2557899999999999999964
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=4.1e-12 Score=102.24 Aligned_cols=105 Identities=13% Similarity=0.054 Sum_probs=82.2
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccc----------cCccceEEEEecCCCCC
Q psy10572 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSEL----------LDQGRVQFVVWNGKHGY 119 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~----------~~~~~~~~~~~d~~~~~ 119 (204)
++.+|||+|||+|..++.+++.. +..+|+++|+++.+++.+++|++.+.... .+..+++++++|+....
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~-~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~ 125 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALET-PAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLM 125 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHS-SCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHH
Confidence 67899999999999999999986 44589999999999999999998861000 01234899999975432
Q ss_pred C-CCCCeeEEEECCCcc--chhHHHHHhcCCCcEEEEEe
Q psy10572 120 E-REAPYDIIHVSPSYF--TIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 120 ~-~~~~~D~v~~~~~~~--~~~~~~~~~Lk~gG~l~~~~ 155 (204)
. ....||+|++++... .+++.+.+.|++||++++++
T Consensus 126 ~~~~~~fD~I~lDP~~~~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 126 AERHRYFHFIDLDPFGSPMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp HHSTTCEEEEEECCSSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred HhccCCCCEEEeCCCCCHHHHHHHHHHhcCCCCEEEEEe
Confidence 1 125799999987553 47788999999999988875
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=4.3e-12 Score=107.43 Aligned_cols=99 Identities=17% Similarity=0.235 Sum_probs=78.6
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC--CCCCCCe
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG--YEREAPY 125 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~ 125 (204)
+..+.+|||||||.|.++..+++.. ++|+|||.++.+++.|+..+...+ ..++.+.++++.+. ....++|
T Consensus 64 ~~~~~~vLDvGCG~G~~~~~la~~g---a~V~giD~~~~~i~~a~~~a~~~~-----~~~~~~~~~~~~~~~~~~~~~~f 135 (569)
T 4azs_A 64 LGRPLNVLDLGCAQGFFSLSLASKG---ATIVGIDFQQENINVCRALAEENP-----DFAAEFRVGRIEEVIAALEEGEF 135 (569)
T ss_dssp HTSCCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHTST-----TSEEEEEECCHHHHHHHCCTTSC
T ss_pred cCCCCeEEEECCCCcHHHHHHHhCC---CEEEEECCCHHHHHHHHHHHHhcC-----CCceEEEECCHHHHhhhccCCCc
Confidence 4567899999999999999999965 499999999999999999887632 24789999987643 2345789
Q ss_pred eEEEECCCccchh--------HHHHHhcCCCcEEEEE
Q psy10572 126 DIIHVSPSYFTIP--------QKLLDQLVPGGRMVMP 154 (204)
Q Consensus 126 D~v~~~~~~~~~~--------~~~~~~Lk~gG~l~~~ 154 (204)
|+|++..+++|+. ..+.+.|+++|..++.
T Consensus 136 D~v~~~e~~ehv~~~~~~~~~~~~~~tl~~~~~~~~~ 172 (569)
T 4azs_A 136 DLAIGLSVFHHIVHLHGIDEVKRLLSRLADVTQAVIL 172 (569)
T ss_dssp SEEEEESCHHHHHHHHCHHHHHHHHHHHHHHSSEEEE
T ss_pred cEEEECcchhcCCCHHHHHHHHHHHHHhccccceeeE
Confidence 9999999998864 2455667777766553
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=3.4e-11 Score=96.23 Aligned_cols=99 Identities=12% Similarity=0.161 Sum_probs=81.2
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEE
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDII 128 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 128 (204)
.+..+|+|||||+|.++..+++.. |..+++..|. |.+++.|+++.... ..++++++.+|+.....+ .+|++
T Consensus 178 ~~~~~v~DvGgG~G~~~~~l~~~~-p~~~~~~~dl-p~v~~~a~~~~~~~-----~~~rv~~~~gD~~~~~~~--~~D~~ 248 (353)
T 4a6d_A 178 SVFPLMCDLGGGAGALAKECMSLY-PGCKITVFDI-PEVVWTAKQHFSFQ-----EEEQIDFQEGDFFKDPLP--EADLY 248 (353)
T ss_dssp GGCSEEEEETCTTSHHHHHHHHHC-SSCEEEEEEC-HHHHHHHHHHSCC-------CCSEEEEESCTTTSCCC--CCSEE
T ss_pred ccCCeEEeeCCCCCHHHHHHHHhC-CCceeEeccC-HHHHHHHHHhhhhc-----ccCceeeecCccccCCCC--CceEE
Confidence 456799999999999999999998 7888999996 88999998887542 246899999998765443 48999
Q ss_pred EECCCccc--------hhHHHHHhcCCCcEEEEEec
Q psy10572 129 HVSPSYFT--------IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 129 ~~~~~~~~--------~~~~~~~~Lk~gG~l~~~~~ 156 (204)
++...+++ +++++.+.|+|||++++...
T Consensus 249 ~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~ 284 (353)
T 4a6d_A 249 ILARVLHDWADGKCSHLLERIYHTCKPGGGILVIES 284 (353)
T ss_dssp EEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred EeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEe
Confidence 99888875 45788899999999988653
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=6.4e-11 Score=88.61 Aligned_cols=96 Identities=16% Similarity=0.087 Sum_probs=78.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEE
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDII 128 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 128 (204)
.++.+|||+|||.|.++..+. +...|+++|+++.+++.++.++...+ .+..+...|....+++ +++|+|
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~----~~~~y~a~DId~~~i~~ar~~~~~~g------~~~~~~v~D~~~~~~~-~~~Dvv 172 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER----GIASVWGCDIHQGLGDVITPFAREKD------WDFTFALQDVLCAPPA-EAGDLA 172 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT----TCSEEEEEESBHHHHHHHHHHHHHTT------CEEEEEECCTTTSCCC-CBCSEE
T ss_pred CCCCeEEEecCCccHHHHHhc----cCCeEEEEeCCHHHHHHHHHHHHhcC------CCceEEEeecccCCCC-CCcchH
Confidence 567899999999999998877 44699999999999999999987633 5788999998776655 589999
Q ss_pred EECCCccchh-------HHHHHhcCCCcEEEEEec
Q psy10572 129 HVSPSYFTIP-------QKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 129 ~~~~~~~~~~-------~~~~~~Lk~gG~l~~~~~ 156 (204)
+++..++++. ..+...|+++|+++- .+
T Consensus 173 Lllk~lh~LE~q~~~~~~~ll~aL~~~~vvVs-fP 206 (253)
T 3frh_A 173 LIFKLLPLLEREQAGSAMALLQSLNTPRMAVS-FP 206 (253)
T ss_dssp EEESCHHHHHHHSTTHHHHHHHHCBCSEEEEE-EE
T ss_pred HHHHHHHHhhhhchhhHHHHHHHhcCCCEEEE-cC
Confidence 9998877643 378889999976654 44
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=3.3e-12 Score=100.04 Aligned_cols=99 Identities=13% Similarity=0.092 Sum_probs=71.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEc----CHHHHHHHHHHhhhcCccccCccceEEEEe-cCCCCCCCC
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEH----VMELAESSIKNIDKGNSELLDQGRVQFVVW-NGKHGYERE 122 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~ 122 (204)
++++.+|||+|||+|.++..+++. ++|+|+|+ ++..++.+ ... ....+++.++.+ |+.... .
T Consensus 80 ~~~g~~VLDlGcG~G~~s~~la~~----~~V~gvD~~~~~~~~~~~~~----~~~---~~~~~~v~~~~~~D~~~l~--~ 146 (305)
T 2p41_A 80 VTPEGKVVDLGCGRGGWSYYCGGL----KNVREVKGLTKGGPGHEEPI----PMS---TYGWNLVRLQSGVDVFFIP--P 146 (305)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTS----TTEEEEEEECCCSTTSCCCC----CCC---STTGGGEEEECSCCTTTSC--C
T ss_pred CCCCCEEEEEcCCCCHHHHHHHhc----CCEEEEeccccCchhHHHHH----Hhh---hcCCCCeEEEeccccccCC--c
Confidence 577889999999999999999886 38999998 45433111 000 012357899998 876543 3
Q ss_pred CCeeEEEECCCcc------------chhHHHHHhcCCCcEEEEEecCCC
Q psy10572 123 APYDIIHVSPSYF------------TIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 123 ~~~D~v~~~~~~~------------~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
.+||+|+++.... ..+..+.++|||||.+++.++.+.
T Consensus 147 ~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~~ 195 (305)
T 2p41_A 147 ERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPY 195 (305)
T ss_dssp CCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCC
T ss_pred CCCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCCC
Confidence 6899999986642 134556799999999999887663
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.4e-11 Score=103.41 Aligned_cols=126 Identities=17% Similarity=0.147 Sum_probs=95.7
Q ss_pred cCCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhC--------------CCceEEEEEcCHHHHHHH
Q psy10572 26 GYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAG--------------PEGRVYGVEHVMELAESS 91 (204)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--------------~~~~v~~vD~~~~~~~~a 91 (204)
..|.+++++.+...|++.+. ..++ +|+|.+||+|.+...+.+.+. ....++|+|+++.++..|
T Consensus 223 ~~G~fyTP~~Vv~lmv~ll~--p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA 299 (544)
T 3khk_A 223 QGGQYYTPKSIVTLIVEMLE--PYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLA 299 (544)
T ss_dssp CSTTTCCCHHHHHHHHHHHC--CCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHH
T ss_pred cCCeEeCCHHHHHHHHHHHh--cCCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHH
Confidence 35788899999999999886 3444 999999999999887765431 035899999999999999
Q ss_pred HHHhhhcCccccCccceEEEEecCCCCC-CCCCCeeEEEECCCccc----------------------------------
Q psy10572 92 IKNIDKGNSELLDQGRVQFVVWNGKHGY-EREAPYDIIHVSPSYFT---------------------------------- 136 (204)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v~~~~~~~~---------------------------------- 136 (204)
+.++..++. ..++.+.++|..... ....+||+|++|+|+..
T Consensus 300 ~~Nl~l~gi----~~~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~ 375 (544)
T 3khk_A 300 AMNMVIRGI----DFNFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANF 375 (544)
T ss_dssp HHHHHHTTC----CCBCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHH
T ss_pred HHHHHHhCC----CcccceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhH
Confidence 999876541 123444677765432 33468999999988742
Q ss_pred -hhHHHHHhcCCCcEEEEEecCC
Q psy10572 137 -IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 137 -~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
+++.+.+.|+|||++.+.++++
T Consensus 376 ~Fl~~~l~~Lk~gGr~aiVlP~g 398 (544)
T 3khk_A 376 AWMLHMLYHLAPTGSMALLLANG 398 (544)
T ss_dssp HHHHHHHHTEEEEEEEEEEEETH
T ss_pred HHHHHHHHHhccCceEEEEecch
Confidence 3467889999999999988754
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.9e-11 Score=98.22 Aligned_cols=93 Identities=12% Similarity=0.113 Sum_probs=75.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEE
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDII 128 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 128 (204)
.+..+|||||||+|..+..+++.. +..+++++|+ +.+++.+++ .++++++.+|+.+ ..+.+ |+|
T Consensus 202 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~d~~~-~~p~~--D~v 265 (368)
T 3reo_A 202 EGLTTIVDVGGGTGAVASMIVAKY-PSINAINFDL-PHVIQDAPA-----------FSGVEHLGGDMFD-GVPKG--DAI 265 (368)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCC-----------CTTEEEEECCTTT-CCCCC--SEE
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhC-CCCEEEEEeh-HHHHHhhhh-----------cCCCEEEecCCCC-CCCCC--CEE
Confidence 456899999999999999999988 7789999999 877766542 2579999999876 34433 999
Q ss_pred EECCCccc--------hhHHHHHhcCCCcEEEEEecC
Q psy10572 129 HVSPSYFT--------IPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 129 ~~~~~~~~--------~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
++...+++ +++++.++|+|||++++....
T Consensus 266 ~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 302 (368)
T 3reo_A 266 FIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYI 302 (368)
T ss_dssp EEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred EEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 99888874 457888999999999886543
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=99.27 E-value=7.4e-11 Score=89.54 Aligned_cols=115 Identities=17% Similarity=0.118 Sum_probs=85.4
Q ss_pred ccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceE
Q psy10572 30 DISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQ 109 (204)
Q Consensus 30 ~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~ 109 (204)
+...+.+...+++.+. +.++.+|||+|||+|.++..+++.. .+++|+|+++.+++.+++++.. .++++
T Consensus 12 fl~d~~~~~~i~~~~~--~~~~~~VLDiG~G~G~lt~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~-------~~~v~ 79 (244)
T 1qam_A 12 FITSKHNIDKIMTNIR--LNEHDNIFEIGSGKGHFTLELVQRC---NFVTAIEIDHKLCKTTENKLVD-------HDNFQ 79 (244)
T ss_dssp BCCCHHHHHHHHTTCC--CCTTCEEEEECCTTSHHHHHHHHHS---SEEEEECSCHHHHHHHHHHTTT-------CCSEE
T ss_pred ccCCHHHHHHHHHhCC--CCCCCEEEEEeCCchHHHHHHHHcC---CeEEEEECCHHHHHHHHHhhcc-------CCCeE
Confidence 3456667777776665 5678899999999999999999975 3999999999999999988754 25899
Q ss_pred EEEecCCCCCCCC-CCeeEEEECCCccc-----------------hh----HHHHHhcCCCcEEEEEecC
Q psy10572 110 FVVWNGKHGYERE-APYDIIHVSPSYFT-----------------IP----QKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 110 ~~~~d~~~~~~~~-~~~D~v~~~~~~~~-----------------~~----~~~~~~Lk~gG~l~~~~~~ 157 (204)
++++|+.....+. ..| .|++|.++.. ++ +.+.++++++|.+.+....
T Consensus 80 ~~~~D~~~~~~~~~~~~-~vv~nlPy~~~~~~l~~~l~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~~~ 148 (244)
T 1qam_A 80 VLNKDILQFKFPKNQSY-KIFGNIPYNISTDIIRKIVFDSIADEIYLIVEYGFAKRLLNTKRSLALFLMA 148 (244)
T ss_dssp EECCCGGGCCCCSSCCC-EEEEECCGGGHHHHHHHHHHSCCCSEEEEEEEHHHHHHHTCTTSHHHHHHTT
T ss_pred EEEChHHhCCcccCCCe-EEEEeCCcccCHHHHHHHHhcCCCCeEEEEEEHHHHHHHhcCCcchhHHhhh
Confidence 9999987655442 345 5777776632 11 3467778888776554433
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=3e-11 Score=96.95 Aligned_cols=93 Identities=16% Similarity=0.124 Sum_probs=75.7
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
..+..+|||||||+|..+..+++.. +..+++++|+ +.+++.+++ .++++++.+|+.. ..+.+ |+
T Consensus 199 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~D~~~-~~p~~--D~ 262 (364)
T 3p9c_A 199 FEGLGTLVDVGGGVGATVAAIAAHY-PTIKGVNFDL-PHVISEAPQ-----------FPGVTHVGGDMFK-EVPSG--DT 262 (364)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCC-----------CTTEEEEECCTTT-CCCCC--SE
T ss_pred ccCCCEEEEeCCCCCHHHHHHHHHC-CCCeEEEecC-HHHHHhhhh-----------cCCeEEEeCCcCC-CCCCC--CE
Confidence 3466899999999999999999988 7789999999 777766542 2579999999877 44433 99
Q ss_pred EEECCCccc--------hhHHHHHhcCCCcEEEEEec
Q psy10572 128 IHVSPSYFT--------IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 128 v~~~~~~~~--------~~~~~~~~Lk~gG~l~~~~~ 156 (204)
|++...+++ +++++.++|+|||++++...
T Consensus 263 v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~ 299 (364)
T 3p9c_A 263 ILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQC 299 (364)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred EEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 999888874 35788899999999988654
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.25 E-value=2e-11 Score=90.63 Aligned_cols=93 Identities=14% Similarity=0.136 Sum_probs=70.9
Q ss_pred HHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC
Q psy10572 39 QMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG 118 (204)
Q Consensus 39 ~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~ 118 (204)
.+++.+.. ..++.+|||+|||+|.++..++ .+++++|+++. ++.++.+|+...
T Consensus 57 ~~~~~l~~-~~~~~~vLDiG~G~G~~~~~l~------~~v~~~D~s~~--------------------~~~~~~~d~~~~ 109 (215)
T 2zfu_A 57 RIARDLRQ-RPASLVVADFGCGDCRLASSIR------NPVHCFDLASL--------------------DPRVTVCDMAQV 109 (215)
T ss_dssp HHHHHHHT-SCTTSCEEEETCTTCHHHHHCC------SCEEEEESSCS--------------------STTEEESCTTSC
T ss_pred HHHHHHhc-cCCCCeEEEECCcCCHHHHHhh------ccEEEEeCCCC--------------------CceEEEeccccC
Confidence 34444442 3677899999999999987662 38999999886 245677787765
Q ss_pred CCCCCCeeEEEECCCccc-----hhHHHHHhcCCCcEEEEEecCC
Q psy10572 119 YEREAPYDIIHVSPSYFT-----IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 119 ~~~~~~~D~v~~~~~~~~-----~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
..+.++||+|++...+++ +++.+.++|+|||.+++..+..
T Consensus 110 ~~~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 154 (215)
T 2zfu_A 110 PLEDESVDVAVFCLSLMGTNIRDFLEEANRVLKPGGLLKVAEVSS 154 (215)
T ss_dssp SCCTTCEEEEEEESCCCSSCHHHHHHHHHHHEEEEEEEEEEECGG
T ss_pred CCCCCCEeEEEEehhccccCHHHHHHHHHHhCCCCeEEEEEEcCC
Confidence 556678999999877653 5588899999999999976544
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.8e-11 Score=98.51 Aligned_cols=92 Identities=13% Similarity=0.131 Sum_probs=75.6
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
+.+..+|||+|||+|..+..+++.. +..+++++|+ +.+++.+++ .++++++.+|+.. ..+. ||+
T Consensus 207 ~~~~~~vLDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~d~~~-~~~~--~D~ 270 (372)
T 1fp1_D 207 FEGISTLVDVGGGSGRNLELIISKY-PLIKGINFDL-PQVIENAPP-----------LSGIEHVGGDMFA-SVPQ--GDA 270 (372)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCC-----------CTTEEEEECCTTT-CCCC--EEE
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHHC-CCCeEEEeCh-HHHHHhhhh-----------cCCCEEEeCCccc-CCCC--CCE
Confidence 3567899999999999999999988 6779999999 888876643 1469999999876 3433 999
Q ss_pred EEECCCccc--------hhHHHHHhcCCCcEEEEEe
Q psy10572 128 IHVSPSYFT--------IPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 128 v~~~~~~~~--------~~~~~~~~Lk~gG~l~~~~ 155 (204)
|++...+++ +++++.++|+|||++++..
T Consensus 271 v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e 306 (372)
T 1fp1_D 271 MILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVE 306 (372)
T ss_dssp EEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 999988864 4578889999999999864
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.24 E-value=4.6e-12 Score=97.27 Aligned_cols=102 Identities=17% Similarity=0.058 Sum_probs=71.9
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEE--EecCCCCCCCCCCe
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV--VWNGKHGYEREAPY 125 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~d~~~~~~~~~~~ 125 (204)
+.++.+|||+|||+|.++..+++. ++|+|+|+++ ++..++....... ....++.++ ++|+.... .++|
T Consensus 72 ~~~g~~VLDlGcGtG~~s~~la~~----~~V~gvD~s~-m~~~a~~~~~~~~---~~~~~v~~~~~~~D~~~l~--~~~f 141 (265)
T 2oxt_A 72 VELTGRVVDLGCGRGGWSYYAASR----PHVMDVRAYT-LGVGGHEVPRITE---SYGWNIVKFKSRVDIHTLP--VERT 141 (265)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHTS----TTEEEEEEEC-CCCSSCCCCCCCC---BTTGGGEEEECSCCTTTSC--CCCC
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHc----CcEEEEECch-hhhhhhhhhhhhh---ccCCCeEEEecccCHhHCC--CCCC
Confidence 578899999999999999999886 3899999998 4322211100000 001268888 88877643 4689
Q ss_pred eEEEECCCcc------------chhHHHHHhcCCCc--EEEEEecCCC
Q psy10572 126 DIIHVSPSYF------------TIPQKLLDQLVPGG--RMVMPVGEPF 159 (204)
Q Consensus 126 D~v~~~~~~~------------~~~~~~~~~Lk~gG--~l~~~~~~~~ 159 (204)
|+|+++.... ..++.+.++|+||| .+++.+....
T Consensus 142 D~V~sd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~~~ 189 (265)
T 2oxt_A 142 DVIMCDVGESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLCPY 189 (265)
T ss_dssp SEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESCTT
T ss_pred cEEEEeCcccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCCCC
Confidence 9999986511 13466779999999 9999887644
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.8e-11 Score=98.72 Aligned_cols=103 Identities=12% Similarity=0.080 Sum_probs=82.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccc-eEEEEecCCCCCC--CCCCe
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGR-VQFVVWNGKHGYE--REAPY 125 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~--~~~~~ 125 (204)
.++.+|||++||+|.+++.+++..+...+|+++|+++.+++.+++|++.++. ..+ ++++.+|+..... ....|
T Consensus 51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl----~~~~v~v~~~Da~~~l~~~~~~~f 126 (392)
T 3axs_A 51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNI----PEDRYEIHGMEANFFLRKEWGFGF 126 (392)
T ss_dssp CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTC----CGGGEEEECSCHHHHHHSCCSSCE
T ss_pred CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCC----CCceEEEEeCCHHHHHHHhhCCCC
Confidence 4678999999999999999999752225899999999999999999998651 223 8999999754221 13579
Q ss_pred eEEEECCCc--cchhHHHHHhcCCCcEEEEEe
Q psy10572 126 DIIHVSPSY--FTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 126 D~v~~~~~~--~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
|+|++++.. ..+++.+.+.|++||++++++
T Consensus 127 D~V~lDP~g~~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 127 DYVDLDPFGTPVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp EEEEECCSSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred cEEEECCCcCHHHHHHHHHHHhCCCCEEEEEe
Confidence 999999832 247788999999999998877
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=3e-11 Score=96.45 Aligned_cols=93 Identities=13% Similarity=0.132 Sum_probs=75.9
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
+.+..+|||+|||+|..+..+++.. +..+++++|+ +.+++.+++ .++++++.+|+... .+ .||+
T Consensus 186 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~d~~~~-~p--~~D~ 249 (352)
T 1fp2_A 186 FDGLESIVDVGGGTGTTAKIICETF-PKLKCIVFDR-PQVVENLSG-----------SNNLTYVGGDMFTS-IP--NADA 249 (352)
T ss_dssp HTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCC-----------BTTEEEEECCTTTC-CC--CCSE
T ss_pred cccCceEEEeCCCccHHHHHHHHHC-CCCeEEEeeC-HHHHhhccc-----------CCCcEEEeccccCC-CC--CccE
Confidence 3566899999999999999999987 6779999999 888877653 13699999998663 33 3999
Q ss_pred EEECCCccc--------hhHHHHHhcCC---CcEEEEEec
Q psy10572 128 IHVSPSYFT--------IPQKLLDQLVP---GGRMVMPVG 156 (204)
Q Consensus 128 v~~~~~~~~--------~~~~~~~~Lk~---gG~l~~~~~ 156 (204)
|++...+++ +++++.++|+| ||++++...
T Consensus 250 v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~ 289 (352)
T 1fp2_A 250 VLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDM 289 (352)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEEC
T ss_pred EEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence 999888764 45788899999 999988654
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=99.23 E-value=4.4e-10 Score=82.40 Aligned_cols=101 Identities=17% Similarity=0.074 Sum_probs=77.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC---------
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG--------- 118 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~--------- 118 (204)
+.+..+|||+|| |+.++++++. ++++++++|.++...+.|+++++..+.. ...+++++.+|+.+.
T Consensus 28 l~~a~~VLEiGt--GySTl~lA~~--~~g~VvtvE~d~~~~~~ar~~l~~~g~~--~~~~I~~~~gda~~~~~wg~p~~~ 101 (202)
T 3cvo_A 28 YEEAEVILEYGS--GGSTVVAAEL--PGKHVTSVESDRAWARMMKAWLAANPPA--EGTEVNIVWTDIGPTGDWGHPVSD 101 (202)
T ss_dssp HHHCSEEEEESC--SHHHHHHHTS--TTCEEEEEESCHHHHHHHHHHHHHSCCC--TTCEEEEEECCCSSBCGGGCBSSS
T ss_pred hhCCCEEEEECc--hHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHcCCC--CCCceEEEEeCchhhhcccccccc
Confidence 356789999998 5788888874 3579999999999999999999875400 035899999996543
Q ss_pred ---------------CCCCCCeeEEEECCCcc-chhHHHHHhcCCCcEEEEE
Q psy10572 119 ---------------YEREAPYDIIHVSPSYF-TIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 119 ---------------~~~~~~~D~v~~~~~~~-~~~~~~~~~Lk~gG~l~~~ 154 (204)
....++||+|++++... .....+.++|+|||++++.
T Consensus 102 ~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~k~~~~~~~~l~~l~~GG~Iv~D 153 (202)
T 3cvo_A 102 AKWRSYPDYPLAVWRTEGFRHPDVVLVDGRFRVGCALATAFSITRPVTLLFD 153 (202)
T ss_dssp TTGGGTTHHHHGGGGCTTCCCCSEEEECSSSHHHHHHHHHHHCSSCEEEEET
T ss_pred hhhhhHHHHhhhhhccccCCCCCEEEEeCCCchhHHHHHHHhcCCCeEEEEe
Confidence 11236899999998754 3445677999999999773
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=3.6e-12 Score=98.39 Aligned_cols=102 Identities=14% Similarity=0.037 Sum_probs=72.0
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEE--EecCCCCCCCCCCe
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV--VWNGKHGYEREAPY 125 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~d~~~~~~~~~~~ 125 (204)
+.++.+|||+|||+|.++..+++. ++|+|+|+++ ++..+++...... ....++.++ ++|+.... .++|
T Consensus 80 ~~~g~~VLDlGcGtG~~s~~la~~----~~V~gVD~s~-m~~~a~~~~~~~~---~~~~~v~~~~~~~D~~~l~--~~~f 149 (276)
T 2wa2_A 80 VELKGTVVDLGCGRGSWSYYAASQ----PNVREVKAYT-LGTSGHEKPRLVE---TFGWNLITFKSKVDVTKME--PFQA 149 (276)
T ss_dssp CCCCEEEEEESCTTCHHHHHHHTS----TTEEEEEEEC-CCCTTSCCCCCCC---CTTGGGEEEECSCCGGGCC--CCCC
T ss_pred CCCCCEEEEeccCCCHHHHHHHHc----CCEEEEECch-hhhhhhhchhhhh---hcCCCeEEEeccCcHhhCC--CCCc
Confidence 567889999999999999999886 3899999998 5332221100000 001268888 88876533 4789
Q ss_pred eEEEECCCcc------------chhHHHHHhcCCCc--EEEEEecCCC
Q psy10572 126 DIIHVSPSYF------------TIPQKLLDQLVPGG--RMVMPVGEPF 159 (204)
Q Consensus 126 D~v~~~~~~~------------~~~~~~~~~Lk~gG--~l~~~~~~~~ 159 (204)
|+|+++.... .+++.+.++|+||| .+++.+....
T Consensus 150 D~Vvsd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~~~ 197 (276)
T 2wa2_A 150 DTVLCDIGESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLNPY 197 (276)
T ss_dssp SEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESCCC
T ss_pred CEEEECCCcCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCCCC
Confidence 9999986511 13566779999999 9999877644
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.3e-10 Score=89.77 Aligned_cols=109 Identities=15% Similarity=0.130 Sum_probs=82.1
Q ss_pred CCc-ccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCC-CceEEEEEcCHHHHHHHHHHhhhcCccccC
Q psy10572 27 YGA-DISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGP-EGRVYGVEHVMELAESSIKNIDKGNSELLD 104 (204)
Q Consensus 27 ~~~-~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~ 104 (204)
+|+ ++..+.+...+++.+. +.++.+|||||||+|.++..+++.... .++++++|+++.+++.++++. .
T Consensus 20 ~GQ~fL~d~~i~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~-~------- 89 (279)
T 3uzu_A 20 FGQNFLVDHGVIDAIVAAIR--PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF-G------- 89 (279)
T ss_dssp CSCCEECCHHHHHHHHHHHC--CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH-G-------
T ss_pred CCccccCCHHHHHHHHHhcC--CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc-C-------
Confidence 344 4467788888888887 778899999999999999999998742 244999999999999999883 1
Q ss_pred ccceEEEEecCCCCCCCC----C--CeeEEEECCCccchhHHHHHhcC
Q psy10572 105 QGRVQFVVWNGKHGYERE----A--PYDIIHVSPSYFTIPQKLLDQLV 146 (204)
Q Consensus 105 ~~~~~~~~~d~~~~~~~~----~--~~D~v~~~~~~~~~~~~~~~~Lk 146 (204)
.+++++++|+....++. . ..+.|+.|.++.-...-+.++|.
T Consensus 90 -~~v~~i~~D~~~~~~~~~~~~~~~~~~~vv~NlPY~iss~il~~ll~ 136 (279)
T 3uzu_A 90 -ELLELHAGDALTFDFGSIARPGDEPSLRIIGNLPYNISSPLLFHLMS 136 (279)
T ss_dssp -GGEEEEESCGGGCCGGGGSCSSSSCCEEEEEECCHHHHHHHHHHHGG
T ss_pred -CCcEEEECChhcCChhHhcccccCCceEEEEccCccccHHHHHHHHh
Confidence 47999999987654332 1 34578889888654444444443
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.18 E-value=5.3e-10 Score=86.41 Aligned_cols=124 Identities=19% Similarity=0.170 Sum_probs=91.2
Q ss_pred HHHHHHHHHHhcc-CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe
Q psy10572 35 HIHAQMLELLKDK-IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW 113 (204)
Q Consensus 35 ~~~~~~~~~l~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 113 (204)
..+..++..+.-. .+..++||-||.|.|..+..+++.. +..+++.+|+++.+++.+++.+..........++++++.+
T Consensus 67 ~~YhE~l~h~~l~~~p~pk~VLIiGgGdG~~~revlk~~-~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~ 145 (294)
T 3o4f_A 67 FIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHK-NVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVID 145 (294)
T ss_dssp HHHHHHHHHHHHHHSSCCCEEEEESCTTSHHHHHHHTCT-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEES
T ss_pred HHHHHHHHHHHHhhCCCCCeEEEECCCchHHHHHHHHcC-CcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEec
Confidence 3455554433211 2456799999999999999999975 4569999999999999999987542111124579999999
Q ss_pred cCCCCCC-CCCCeeEEEECCCcc----------chhHHHHHhcCCCcEEEEEecCCC
Q psy10572 114 NGKHGYE-REAPYDIIHVSPSYF----------TIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 114 d~~~~~~-~~~~~D~v~~~~~~~----------~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
|+..... ..++||+|+++...+ .+.+.+.+.|+|||++++...+..
T Consensus 146 Dg~~~l~~~~~~yDvIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~sp~ 202 (294)
T 3o4f_A 146 DGVNFVNQTSQTFDVIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGVCF 202 (294)
T ss_dssp CTTTTTSCSSCCEEEEEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEEESS
T ss_pred hHHHHHhhccccCCEEEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEecCCcc
Confidence 9886542 346899999986432 256899999999999998665443
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=99.17 E-value=2.6e-10 Score=98.25 Aligned_cols=133 Identities=11% Similarity=0.040 Sum_probs=93.2
Q ss_pred cCCcccCChHHHHHHHHH----HhccCCCCCEEEEEcCCCcHHHHHHHHHhC--CCceEEEEEcCHHHHHHH--HHHhhh
Q psy10572 26 GYGADISSPHIHAQMLEL----LKDKIKPGARILDIGSGSGYLTACLAYMAG--PEGRVYGVEHVMELAESS--IKNIDK 97 (204)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~----l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~~~~v~~vD~~~~~~~~a--~~~~~~ 97 (204)
..|.+.+++.+...|+.. +.....++.+|+|.|||+|.+...+++..+ ...+++|+|+++.+++.| +.++..
T Consensus 293 k~GqFYTP~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~l 372 (878)
T 3s1s_A 293 HEGVVPTDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLF 372 (878)
T ss_dssp CCBSSSCCHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTS
T ss_pred cCceEcCCHHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHH
Confidence 457888888888888887 222234678999999999999999988762 135899999999999999 555433
Q ss_pred cCccccCccceEEEEecCCCC-CCCCCCeeEEEECCCccc-----------------------------------hhHHH
Q psy10572 98 GNSELLDQGRVQFVVWNGKHG-YEREAPYDIIHVSPSYFT-----------------------------------IPQKL 141 (204)
Q Consensus 98 ~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~v~~~~~~~~-----------------------------------~~~~~ 141 (204)
+... .......+...|.... .....+||+|++|+|+.. +++.+
T Consensus 373 N~Ll-hGi~~~~I~~dD~L~~~~~~~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~A 451 (878)
T 3s1s_A 373 PQLV-SSNNAPTITGEDVCSLNPEDFANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELV 451 (878)
T ss_dssp TTTC-BTTBCCEEECCCGGGCCGGGGTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHH
T ss_pred hhhh-cCCCcceEEecchhcccccccCCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHH
Confidence 1100 0112234555554432 123467999999999821 23567
Q ss_pred HHhcCCCcEEEEEecCCC
Q psy10572 142 LDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 142 ~~~Lk~gG~l~~~~~~~~ 159 (204)
.+.|++||++.+.+++..
T Consensus 452 l~lLKpGGrLAfIlP~s~ 469 (878)
T 3s1s_A 452 TELVQDGTVISAIMPKQY 469 (878)
T ss_dssp HHHSCTTCEEEEEEETHH
T ss_pred HHhcCCCcEEEEEEChHH
Confidence 789999999999888765
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=6.2e-11 Score=92.48 Aligned_cols=94 Identities=18% Similarity=0.176 Sum_probs=75.8
Q ss_pred ChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEE
Q psy10572 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVV 112 (204)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 112 (204)
.+.+...+++.+. +.++.+|||+|||+|.++..+++.+ +.++++|+|.|+.+++.|++++..++ .++++++
T Consensus 11 ~pvLl~e~l~~L~--~~~g~~vLD~g~G~G~~s~~la~~~-~~~~VigvD~d~~al~~A~~~~~~~g------~~v~~v~ 81 (301)
T 1m6y_A 11 IPVMVREVIEFLK--PEDEKIILDCTVGEGGHSRAILEHC-PGCRIIGIDVDSEVLRIAEEKLKEFS------DRVSLFK 81 (301)
T ss_dssp CCTTHHHHHHHHC--CCTTCEEEETTCTTSHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHTGGGT------TTEEEEE
T ss_pred cHHHHHHHHHhcC--CCCCCEEEEEeCCcCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcC------CcEEEEE
Confidence 3445667777776 6788999999999999999999987 46799999999999999999987632 5899999
Q ss_pred ecCCCCC--C---CCCCeeEEEECCCcc
Q psy10572 113 WNGKHGY--E---REAPYDIIHVSPSYF 135 (204)
Q Consensus 113 ~d~~~~~--~---~~~~~D~v~~~~~~~ 135 (204)
+|+.... . ...+||.|+++.++.
T Consensus 82 ~d~~~l~~~l~~~g~~~~D~Vl~D~gvS 109 (301)
T 1m6y_A 82 VSYREADFLLKTLGIEKVDGILMDLGVS 109 (301)
T ss_dssp CCGGGHHHHHHHTTCSCEEEEEEECSCC
T ss_pred CCHHHHHHHHHhcCCCCCCEEEEcCccc
Confidence 9976432 1 114799999988764
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=9.6e-10 Score=95.04 Aligned_cols=122 Identities=18% Similarity=0.220 Sum_probs=90.5
Q ss_pred CChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhC--------------------------------------
Q psy10572 32 SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAG-------------------------------------- 73 (204)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-------------------------------------- 73 (204)
..+.+.+.++.... ..++..|+|.+||+|.+.+.++....
T Consensus 174 l~e~LAa~ll~~~~--~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~ 251 (703)
T 3v97_A 174 IKETLAAAIVMRSG--WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKG 251 (703)
T ss_dssp SCHHHHHHHHHHTT--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHhhC--CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhc
Confidence 34455666666554 56788999999999999988876530
Q ss_pred ---CCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCC--CCCeeEEEECCCccch-----------
Q psy10572 74 ---PEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYER--EAPYDIIHVSPSYFTI----------- 137 (204)
Q Consensus 74 ---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~D~v~~~~~~~~~----------- 137 (204)
+...++|+|+++.+++.|+.|+...+. ...+++.++|+.....+ .++||+|++|+++..-
T Consensus 252 ~~~~~~~i~G~Did~~av~~A~~N~~~agv----~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly 327 (703)
T 3v97_A 252 LAEYSSHFYGSDSDARVIQRARTNARLAGI----GELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALH 327 (703)
T ss_dssp HHHCCCCEEEEESCHHHHHHHHHHHHHTTC----GGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHH
T ss_pred cccCCccEEEEECCHHHHHHHHHHHHHcCC----CCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHH
Confidence 125899999999999999999987551 23599999998765332 2379999999998531
Q ss_pred --hHHHHHhcCCCcEEEEEecCCC
Q psy10572 138 --PQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 138 --~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
+....+.+.|||.+++.+++..
T Consensus 328 ~~l~~~lk~~~~g~~~~ilt~~~~ 351 (703)
T 3v97_A 328 SLLGRIMKNQFGGWNLSLFSASPD 351 (703)
T ss_dssp HHHHHHHHHHCTTCEEEEEESCHH
T ss_pred HHHHHHHHhhCCCCeEEEEeCCHH
Confidence 1344455679999999887665
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=9.7e-11 Score=90.78 Aligned_cols=91 Identities=14% Similarity=0.125 Sum_probs=68.4
Q ss_pred CCCCCEEEEEcCCC------cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEE-EEecCCCCCC
Q psy10572 48 IKPGARILDIGSGS------GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQF-VVWNGKHGYE 120 (204)
Q Consensus 48 ~~~~~~vLdiG~G~------G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~d~~~~~~ 120 (204)
++++.+|||+|||+ |. ..+++..++.++|+|+|+++. + +++++ +++|+.....
T Consensus 61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~--------v----------~~v~~~i~gD~~~~~~ 120 (290)
T 2xyq_A 61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF--------V----------SDADSTLIGDCATVHT 120 (290)
T ss_dssp CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC--------B----------CSSSEEEESCGGGCCC
T ss_pred CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC--------C----------CCCEEEEECccccCCc
Confidence 57888999999955 65 555666644679999999997 1 25677 9999876544
Q ss_pred CCCCeeEEEECCCcc-----------------chhHHHHHhcCCCcEEEEEecCCC
Q psy10572 121 REAPYDIIHVSPSYF-----------------TIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 121 ~~~~~D~v~~~~~~~-----------------~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
+ ++||+|+++.... .+++.+.++|||||.|++.++...
T Consensus 121 ~-~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~ 175 (290)
T 2xyq_A 121 A-NKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHS 175 (290)
T ss_dssp S-SCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSS
T ss_pred c-CcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccC
Confidence 3 6799999975321 356788999999999999776543
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.8e-10 Score=87.57 Aligned_cols=104 Identities=17% Similarity=0.206 Sum_probs=78.8
Q ss_pred Cc-ccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCcc
Q psy10572 28 GA-DISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQG 106 (204)
Q Consensus 28 ~~-~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~ 106 (204)
|+ ++..+.+...+++.+. +.++.+|||+|||+|.++..+++.. ..+++++|+++.+++.++++ . ..
T Consensus 10 GQnfl~d~~i~~~iv~~~~--~~~~~~VLDiG~G~G~lt~~L~~~~--~~~v~avEid~~~~~~~~~~-~--------~~ 76 (249)
T 3ftd_A 10 GQHLLVSEGVLKKIAEELN--IEEGNTVVEVGGGTGNLTKVLLQHP--LKKLYVIELDREMVENLKSI-G--------DE 76 (249)
T ss_dssp CSSCEECHHHHHHHHHHTT--CCTTCEEEEEESCHHHHHHHHTTSC--CSEEEEECCCHHHHHHHTTS-C--------CT
T ss_pred cccccCCHHHHHHHHHhcC--CCCcCEEEEEcCchHHHHHHHHHcC--CCeEEEEECCHHHHHHHHhc-c--------CC
Confidence 44 4466778888888887 6788899999999999999998862 35999999999999999876 2 24
Q ss_pred ceEEEEecCCCCCCCC--CCeeEEEECCCccchhHHHHHhc
Q psy10572 107 RVQFVVWNGKHGYERE--APYDIIHVSPSYFTIPQKLLDQL 145 (204)
Q Consensus 107 ~~~~~~~d~~~~~~~~--~~~D~v~~~~~~~~~~~~~~~~L 145 (204)
+++++++|+....++. ..+ .|++|.++.-...-+.++|
T Consensus 77 ~v~~i~~D~~~~~~~~~~~~~-~vv~NlPy~i~~~il~~ll 116 (249)
T 3ftd_A 77 RLEVINEDASKFPFCSLGKEL-KVVGNLPYNVASLIIENTV 116 (249)
T ss_dssp TEEEECSCTTTCCGGGSCSSE-EEEEECCTTTHHHHHHHHH
T ss_pred CeEEEEcchhhCChhHccCCc-EEEEECchhccHHHHHHHH
Confidence 7999999988655432 234 7888888865433333333
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=99.12 E-value=1.2e-10 Score=88.64 Aligned_cols=95 Identities=12% Similarity=0.032 Sum_probs=73.4
Q ss_pred ccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceE
Q psy10572 30 DISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQ 109 (204)
Q Consensus 30 ~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~ 109 (204)
++..+.+...+++.+. +.++.+|||||||+|.++. +.+ . ...+++++|+++.+++.+++++.. .++++
T Consensus 3 fL~d~~i~~~iv~~~~--~~~~~~VLEIG~G~G~lt~-l~~-~-~~~~v~avEid~~~~~~a~~~~~~-------~~~v~ 70 (252)
T 1qyr_A 3 FLNDQFVIDSIVSAIN--PQKGQAMVEIGPGLAALTE-PVG-E-RLDQLTVIELDRDLAARLQTHPFL-------GPKLT 70 (252)
T ss_dssp EECCHHHHHHHHHHHC--CCTTCCEEEECCTTTTTHH-HHH-T-TCSCEEEECCCHHHHHHHHTCTTT-------GGGEE
T ss_pred CcCCHHHHHHHHHhcC--CCCcCEEEEECCCCcHHHH-hhh-C-CCCeEEEEECCHHHHHHHHHHhcc-------CCceE
Confidence 4567778888888886 6788899999999999999 653 3 322399999999999999987654 24899
Q ss_pred EEEecCCCCCCCC-----CCeeEEEECCCccc
Q psy10572 110 FVVWNGKHGYERE-----APYDIIHVSPSYFT 136 (204)
Q Consensus 110 ~~~~d~~~~~~~~-----~~~D~v~~~~~~~~ 136 (204)
++++|+.....+. +..+.|++|.++.-
T Consensus 71 ~i~~D~~~~~~~~~~~~~~~~~~vvsNlPY~i 102 (252)
T 1qyr_A 71 IYQQDAMTFNFGELAEKMGQPLRVFGNLPYNI 102 (252)
T ss_dssp EECSCGGGCCHHHHHHHHTSCEEEEEECCTTT
T ss_pred EEECchhhCCHHHhhcccCCceEEEECCCCCc
Confidence 9999987654321 23578999988753
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=2e-10 Score=91.88 Aligned_cols=92 Identities=12% Similarity=0.127 Sum_probs=74.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEE
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDII 128 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 128 (204)
.+..+|||+|||+|.++..+++.. +..+++++|+ +.+++.+++ .++++++.+|+.. ..+ .||+|
T Consensus 192 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~d~~~-~~~--~~D~v 255 (358)
T 1zg3_A 192 EGLESLVDVGGGTGGVTKLIHEIF-PHLKCTVFDQ-PQVVGNLTG-----------NENLNFVGGDMFK-SIP--SADAV 255 (358)
T ss_dssp HTCSEEEEETCTTSHHHHHHHHHC-TTSEEEEEEC-HHHHSSCCC-----------CSSEEEEECCTTT-CCC--CCSEE
T ss_pred cCCCEEEEECCCcCHHHHHHHHHC-CCCeEEEecc-HHHHhhccc-----------CCCcEEEeCccCC-CCC--CceEE
Confidence 456899999999999999999988 6779999998 777765542 2469999999876 333 49999
Q ss_pred EECCCccc--------hhHHHHHhcCC---CcEEEEEec
Q psy10572 129 HVSPSYFT--------IPQKLLDQLVP---GGRMVMPVG 156 (204)
Q Consensus 129 ~~~~~~~~--------~~~~~~~~Lk~---gG~l~~~~~ 156 (204)
++...+++ +++++.++|+| ||++++...
T Consensus 256 ~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~ 294 (358)
T 1zg3_A 256 LLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDI 294 (358)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEEC
T ss_pred EEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence 99988765 44788899999 999988543
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=4.4e-10 Score=89.54 Aligned_cols=123 Identities=20% Similarity=0.178 Sum_probs=92.5
Q ss_pred HHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCcccc-CccceEEEEecCC
Q psy10572 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELL-DQGRVQFVVWNGK 116 (204)
Q Consensus 38 ~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~d~~ 116 (204)
......+. +.++.+|||+++|+|.-+..++... ..+.++++|+++..++..++++...+.... ...++.+...|..
T Consensus 138 ~l~~~~L~--~~pg~~VLD~CAaPGGKT~~la~~~-~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~ 214 (359)
T 4fzv_A 138 LLPVLALG--LQPGDIVLDLCAAPGGKTLALLQTG-CCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGR 214 (359)
T ss_dssp HHHHHHHC--CCTTEEEEESSCTTCHHHHHHHHTT-CEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGG
T ss_pred HHHHHHhC--CCCCCEEEEecCCccHHHHHHHHhc-CCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchh
Confidence 33444454 7899999999999999999998876 566899999999999999999876432111 1247888888865
Q ss_pred CCC-CCCCCeeEEEECCCccc------------------------------hhHHHHHhcCCCcEEEEEecCCCCcce
Q psy10572 117 HGY-EREAPYDIIHVSPSYFT------------------------------IPQKLLDQLVPGGRMVMPVGEPFKGQN 163 (204)
Q Consensus 117 ~~~-~~~~~~D~v~~~~~~~~------------------------------~~~~~~~~Lk~gG~l~~~~~~~~~~~~ 163 (204)
... ...+.||.|++++++.. ++..+.++|||||+|+.++++-...+.
T Consensus 215 ~~~~~~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~~~EN 292 (359)
T 4fzv_A 215 KWGELEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSHLQN 292 (359)
T ss_dssp GHHHHSTTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCCTTTT
T ss_pred hcchhccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCchhhC
Confidence 422 23467999999887632 235677889999999999988775544
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.07 E-value=6.1e-10 Score=90.07 Aligned_cols=80 Identities=23% Similarity=0.172 Sum_probs=65.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhc--CccccCccceEEEEecCCCCCC--CCC
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKG--NSELLDQGRVQFVVWNGKHGYE--REA 123 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--~~~~~~~~~~~~~~~d~~~~~~--~~~ 123 (204)
+.++.+|||+|||+|..+..+++.. .+|+++|+|+.+++.|+.++... + ..+++++++|+..... +..
T Consensus 91 l~~g~~VLDLgcG~G~~al~LA~~g---~~V~~VD~s~~~l~~Ar~N~~~~~~g-----l~~i~~i~~Da~~~L~~~~~~ 162 (410)
T 3ll7_A 91 IREGTKVVDLTGGLGIDFIALMSKA---SQGIYIERNDETAVAARHNIPLLLNE-----GKDVNILTGDFKEYLPLIKTF 162 (410)
T ss_dssp SCTTCEEEESSCSSSHHHHHHHTTC---SEEEEEESCHHHHHHHHHHHHHHSCT-----TCEEEEEESCGGGSHHHHHHH
T ss_pred cCCCCEEEEeCCCchHHHHHHHhcC---CEEEEEECCHHHHHHHHHhHHHhccC-----CCcEEEEECcHHHhhhhccCC
Confidence 4568999999999999999988864 49999999999999999999864 3 3589999999876422 125
Q ss_pred CeeEEEECCCcc
Q psy10572 124 PYDIIHVSPSYF 135 (204)
Q Consensus 124 ~~D~v~~~~~~~ 135 (204)
+||+|+++++..
T Consensus 163 ~fDvV~lDPPrr 174 (410)
T 3ll7_A 163 HPDYIYVDPARR 174 (410)
T ss_dssp CCSEEEECCEEC
T ss_pred CceEEEECCCCc
Confidence 799999997764
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.07 E-value=1e-10 Score=84.07 Aligned_cols=83 Identities=20% Similarity=0.162 Sum_probs=67.6
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCC---CCCC
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE---REAP 124 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~ 124 (204)
++++.+|||+|||. +++|+++.+++.|+++... ++++..+|+..... +.++
T Consensus 10 ~~~g~~vL~~~~g~-----------------v~vD~s~~ml~~a~~~~~~---------~~~~~~~d~~~~~~~~~~~~~ 63 (176)
T 2ld4_A 10 ISAGQFVAVVWDKS-----------------SPVEALKGLVDKLQALTGN---------EGRVSVENIKQLLQSAHKESS 63 (176)
T ss_dssp CCTTSEEEEEECTT-----------------SCHHHHHHHHHHHHHHTTT---------TSEEEEEEGGGGGGGCCCSSC
T ss_pred CCCCCEEEEecCCc-----------------eeeeCCHHHHHHHHHhccc---------CcEEEEechhcCccccCCCCC
Confidence 57899999999985 1389999999999987532 48889999876544 5678
Q ss_pred eeEEEECCCccch-------hHHHHHhcCCCcEEEEEec
Q psy10572 125 YDIIHVSPSYFTI-------PQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 125 ~D~v~~~~~~~~~-------~~~~~~~Lk~gG~l~~~~~ 156 (204)
||+|+++..++++ ++++.++|||||++++..+
T Consensus 64 fD~V~~~~~l~~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 102 (176)
T 2ld4_A 64 FDIILSGLVPGSTTLHSAEILAEIARILRPGGCLFLKEP 102 (176)
T ss_dssp EEEEEECCSTTCCCCCCHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EeEEEECChhhhcccCHHHHHHHHHHHCCCCEEEEEEcc
Confidence 9999998776654 5899999999999999644
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.05 E-value=2.4e-09 Score=89.71 Aligned_cols=125 Identities=18% Similarity=0.119 Sum_probs=94.9
Q ss_pred CCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCC------------CceEEEEEcCHHHHHHHHHH
Q psy10572 27 YGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGP------------EGRVYGVEHVMELAESSIKN 94 (204)
Q Consensus 27 ~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~------------~~~v~~vD~~~~~~~~a~~~ 94 (204)
.|++++++.+...|++.+. +.++.+|+|.+||+|.+...+.+.+.. ...++|+|+++.+...|+.+
T Consensus 196 ~GqfyTP~~Vv~lmv~l~~--p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mN 273 (530)
T 3ufb_A 196 SGEFYTPRPVVRFMVEVMD--PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMN 273 (530)
T ss_dssp CCCCCCCHHHHHHHHHHHC--CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHH
T ss_pred CceECCcHHHHHHHHHhhc--cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHH
Confidence 5889999999999999987 677889999999999998777665311 23699999999999999998
Q ss_pred hhhcCccccCccceEEEEecCCCCC----CCCCCeeEEEECCCccc----------------------hhHHHHHhcC--
Q psy10572 95 IDKGNSELLDQGRVQFVVWNGKHGY----EREAPYDIIHVSPSYFT----------------------IPQKLLDQLV-- 146 (204)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~v~~~~~~~~----------------------~~~~~~~~Lk-- 146 (204)
+..++ .....+..+|..... ....+||+|++|+|+.. +++.+.+.||
T Consensus 274 l~lhg-----~~~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~ 348 (530)
T 3ufb_A 274 LLLHG-----LEYPRIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRP 348 (530)
T ss_dssp HHHHT-----CSCCEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCT
T ss_pred HHhcC-----CccccccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhh
Confidence 76654 233456677755322 12357999999999832 2356667776
Q ss_pred -----CCcEEEEEecCC
Q psy10572 147 -----PGGRMVMPVGEP 158 (204)
Q Consensus 147 -----~gG~l~~~~~~~ 158 (204)
+||++.+.++++
T Consensus 349 ~~~l~~gGr~avVlP~g 365 (530)
T 3ufb_A 349 GHGSDNGGRAAVVVPNG 365 (530)
T ss_dssp TSSSSSCCEEEEEEEHH
T ss_pred hhccCCCceEEEEecch
Confidence 799999988754
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.9e-10 Score=87.94 Aligned_cols=82 Identities=17% Similarity=0.176 Sum_probs=62.9
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCH-------HHHHHHHHHhhhcCccccCccceEEEEecCCCCC-
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVM-------ELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY- 119 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~-------~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~- 119 (204)
..++.+|||+|||+|.++..+++.. ++|+++|+++ .+++.|+.+...++. ..+++++++|.....
T Consensus 81 ~~~~~~VLDlgcG~G~~a~~lA~~g---~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~----~~ri~~~~~d~~~~l~ 153 (258)
T 2r6z_A 81 HTAHPTVWDATAGLGRDSFVLASLG---LTVTAFEQHPAVACLLSDGIRRALLNPETQDT----AARINLHFGNAAEQMP 153 (258)
T ss_dssp GGGCCCEEETTCTTCHHHHHHHHTT---CCEEEEECCHHHHHHHHHHHHHHHHSHHHHHH----HTTEEEEESCHHHHHH
T ss_pred cCCcCeEEEeeCccCHHHHHHHHhC---CEEEEEECChhhhHHHHHHHHHHHhHHHhhCC----ccCeEEEECCHHHHHH
Confidence 4567899999999999999999863 4899999999 999999888765331 134999999976532
Q ss_pred -CCC--CCeeEEEECCCccc
Q psy10572 120 -ERE--APYDIIHVSPSYFT 136 (204)
Q Consensus 120 -~~~--~~~D~v~~~~~~~~ 136 (204)
.+. ++||+|++++++++
T Consensus 154 ~~~~~~~~fD~V~~dP~~~~ 173 (258)
T 2r6z_A 154 ALVKTQGKPDIVYLDPMYPE 173 (258)
T ss_dssp HHHHHHCCCSEEEECCCC--
T ss_pred hhhccCCCccEEEECCCCCC
Confidence 222 57999999987643
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=1.3e-08 Score=86.43 Aligned_cols=95 Identities=18% Similarity=0.059 Sum_probs=68.6
Q ss_pred CCEEEEEcCCCcHHHHHHHHHh---CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 51 GARILDIGSGSGYLTACLAYMA---GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 51 ~~~vLdiG~G~G~~~~~l~~~~---~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
...|+|+|||+|.++...++.. +...+|++||.++ +...+++....++ -.++|+++++|..+...+ +++|+
T Consensus 358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~----~~dkVtVI~gd~eev~LP-EKVDI 431 (637)
T 4gqb_A 358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEE----WGSQVTVVSSDMREWVAP-EKADI 431 (637)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHT----TGGGEEEEESCTTTCCCS-SCEEE
T ss_pred CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhcc----CCCeEEEEeCcceeccCC-cccCE
Confidence 3579999999999955554443 2334799999997 5667777776654 246899999998876555 68999
Q ss_pred EEECCCc--------cchhHHHHHhcCCCcEE
Q psy10572 128 IHVSPSY--------FTIPQKLLDQLVPGGRM 151 (204)
Q Consensus 128 v~~~~~~--------~~~~~~~~~~Lk~gG~l 151 (204)
|++-..- ..++....+.|||||++
T Consensus 432 IVSEwMG~fLl~E~mlevL~Ardr~LKPgGim 463 (637)
T 4gqb_A 432 IVSELLGSFADNELSPECLDGAQHFLKDDGVS 463 (637)
T ss_dssp EECCCCBTTBGGGCHHHHHHHHGGGEEEEEEE
T ss_pred EEEEcCcccccccCCHHHHHHHHHhcCCCcEE
Confidence 9874221 12345566889999987
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.80 E-value=1.2e-08 Score=77.74 Aligned_cols=86 Identities=17% Similarity=0.196 Sum_probs=62.7
Q ss_pred CCCC--CEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCcc-ccC--c-cceEEEEecCCCCCC-
Q psy10572 48 IKPG--ARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSE-LLD--Q-GRVQFVVWNGKHGYE- 120 (204)
Q Consensus 48 ~~~~--~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~--~-~~~~~~~~d~~~~~~- 120 (204)
+.++ .+|||+|||+|..+..++... ++|+++|.++.+.+.++.+++....+ ..+ . .+++++++|......
T Consensus 84 l~~g~~~~VLDl~~G~G~dal~lA~~g---~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~ 160 (258)
T 2oyr_A 84 IKGDYLPDVVDATAGLGRDAFVLASVG---CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD 160 (258)
T ss_dssp CBTTBCCCEEETTCTTCHHHHHHHHHT---CCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTT
T ss_pred ccCCCCCEEEEcCCcCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHh
Confidence 4566 899999999999999999974 38999999999877777765431100 011 1 579999999764321
Q ss_pred CCCCeeEEEECCCccc
Q psy10572 121 REAPYDIIHVSPSYFT 136 (204)
Q Consensus 121 ~~~~~D~v~~~~~~~~ 136 (204)
-..+||+|++++++++
T Consensus 161 ~~~~fDvV~lDP~y~~ 176 (258)
T 2oyr_A 161 ITPRPQVVYLDPMFPH 176 (258)
T ss_dssp CSSCCSEEEECCCCCC
T ss_pred CcccCCEEEEcCCCCC
Confidence 1236999999988754
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=98.74 E-value=4.4e-08 Score=75.46 Aligned_cols=105 Identities=11% Similarity=0.116 Sum_probs=78.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhC----CCceEEEEEcCHH--------------------------HHHHHHHHhhhc
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAG----PEGRVYGVEHVME--------------------------LAESSIKNIDKG 98 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~----~~~~v~~vD~~~~--------------------------~~~~a~~~~~~~ 98 (204)
.....|||+|+..|+.++.++..+. ++.+++++|..+. ..+.++++++..
T Consensus 105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~ 184 (282)
T 2wk1_A 105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY 184 (282)
T ss_dssp TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence 4567999999999999998877652 3678999996421 356778888764
Q ss_pred CccccCccceEEEEecCCCCCC--CCCCeeEEEECCCccc----hhHHHHHhcCCCcEEEEEec
Q psy10572 99 NSELLDQGRVQFVVWNGKHGYE--REAPYDIIHVSPSYFT----IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 99 ~~~~~~~~~~~~~~~d~~~~~~--~~~~~D~v~~~~~~~~----~~~~~~~~Lk~gG~l~~~~~ 156 (204)
+ +..++++++.+++.+... +.++||+|+++..... .++.+...|+|||++++.-.
T Consensus 185 g---l~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~y~~~~~~Le~~~p~L~pGGiIv~DD~ 245 (282)
T 2wk1_A 185 D---LLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDLYESTWDTLTNLYPKVSVGGYVIVDDY 245 (282)
T ss_dssp T---CCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCSHHHHHHHHHHHGGGEEEEEEEEESSC
T ss_pred C---CCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCccccHHHHHHHHHhhcCCCEEEEEcCC
Confidence 4 113689999999764332 2468999999987632 45788899999999998554
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=1.5e-08 Score=77.01 Aligned_cols=104 Identities=15% Similarity=0.106 Sum_probs=68.6
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
++++.+|||+|||+|.++..++... +...+.++|+.-.+....... . .. ..++.....+......+..++|+
T Consensus 72 l~~~~~VLDLGaAPGGWSQvAa~~~-~~~~v~g~dVGvDl~~~pi~~--~----~~-g~~ii~~~~~~dv~~l~~~~~Dl 143 (277)
T 3evf_A 72 VKLEGRVIDLGCGRGGWCYYAAAQK-EVSGVKGFTLGRDGHEKPMNV--Q----SL-GWNIITFKDKTDIHRLEPVKCDT 143 (277)
T ss_dssp SCCCEEEEEETCTTCHHHHHHHTST-TEEEEEEECCCCTTCCCCCCC--C----BT-TGGGEEEECSCCTTTSCCCCCSE
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhc-CCCcceeEEEeccCccccccc--C----cC-CCCeEEEeccceehhcCCCCccE
Confidence 6788899999999999999988764 344788888774421000000 0 00 11444455554333345578999
Q ss_pred EEECCCcc----c--------hhHHHHHhcCCC-cEEEEEecCCC
Q psy10572 128 IHVSPSYF----T--------IPQKLLDQLVPG-GRMVMPVGEPF 159 (204)
Q Consensus 128 v~~~~~~~----~--------~~~~~~~~Lk~g-G~l~~~~~~~~ 159 (204)
|+++.... + +++.+.++|+|| |.+++.++.+.
T Consensus 144 VlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~py 188 (277)
T 3evf_A 144 LLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLAPY 188 (277)
T ss_dssp EEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTT
T ss_pred EEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCC
Confidence 99986443 1 335667899999 99999999853
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.68 E-value=4.4e-08 Score=74.69 Aligned_cols=105 Identities=12% Similarity=0.031 Sum_probs=70.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHh------CCC-----ceEEEEEcCH---HHH-----------HHHHHHhhhcCccc-
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMA------GPE-----GRVYGVEHVM---ELA-----------ESSIKNIDKGNSEL- 102 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~------~~~-----~~v~~vD~~~---~~~-----------~~a~~~~~~~~~~~- 102 (204)
++..+|||+|+|+|+.+..+++.. .|. .+++++|..+ ..+ +.++..+..+....
T Consensus 59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~ 138 (257)
T 2qy6_A 59 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP 138 (257)
T ss_dssp SSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCS
T ss_pred CCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcccccc
Confidence 355799999999999988876653 353 4899999887 333 34555544321000
Q ss_pred ------c--CccceEEEEecCCCCCC--CC---CCeeEEEECCCc---------cchhHHHHHhcCCCcEEEE
Q psy10572 103 ------L--DQGRVQFVVWNGKHGYE--RE---APYDIIHVSPSY---------FTIPQKLLDQLVPGGRMVM 153 (204)
Q Consensus 103 ------~--~~~~~~~~~~d~~~~~~--~~---~~~D~v~~~~~~---------~~~~~~~~~~Lk~gG~l~~ 153 (204)
. ...+++++.+|+.+... +. ..||+|+.++.. ..+++.+.++|+|||+|+.
T Consensus 139 g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t 211 (257)
T 2qy6_A 139 GCHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT 211 (257)
T ss_dssp EEEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred chhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEE
Confidence 0 12467889999764321 11 379999998532 2266899999999999985
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.68 E-value=2.4e-08 Score=84.92 Aligned_cols=97 Identities=14% Similarity=-0.031 Sum_probs=66.6
Q ss_pred CCEEEEEcCCCcHHHHHHHHHh---C---------CCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC
Q psy10572 51 GARILDIGSGSGYLTACLAYMA---G---------PEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG 118 (204)
Q Consensus 51 ~~~vLdiG~G~G~~~~~l~~~~---~---------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~ 118 (204)
+..|||+|||+|.++...++.. + ...+|++||.++.+....+.... ++ -.+.++++++|..+.
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng----~~d~VtVI~gd~eev 484 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RT----WKRRVTIIESDMRSL 484 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HT----TTTCSEEEESCGGGH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cC----CCCeEEEEeCchhhc
Confidence 4589999999999975443332 1 23499999999977766555543 22 135699999998765
Q ss_pred CCC-----CCCeeEEEECCCc----c----chhHHHHHhcCCCcEEE
Q psy10572 119 YER-----EAPYDIIHVSPSY----F----TIPQKLLDQLVPGGRMV 152 (204)
Q Consensus 119 ~~~-----~~~~D~v~~~~~~----~----~~~~~~~~~Lk~gG~l~ 152 (204)
..+ .++.|+|++-..- . ..+..+.+.|||||+++
T Consensus 485 ~lp~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 485 PGIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp HHHHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred ccccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEE
Confidence 442 4689999985432 1 24455568899999863
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=5.9e-08 Score=77.32 Aligned_cols=107 Identities=16% Similarity=0.137 Sum_probs=77.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCc---cccCccceEEEEecCCCCC----CC
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNS---ELLDQGRVQFVVWNGKHGY----ER 121 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~d~~~~~----~~ 121 (204)
.+.++||-||.|.|..+..+.+.. + .+++.+|+++.+++.+++.+..... +....++++++.+|+.... ..
T Consensus 204 ~~pkrVLIIGgGdG~~~revlkh~-~-~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~ 281 (381)
T 3c6k_A 204 YTGKDVLILGGGDGGILCEIVKLK-P-KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKE 281 (381)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTTC-C-SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHH
T ss_pred CCCCeEEEECCCcHHHHHHHHhcC-C-ceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhc
Confidence 456799999999999999999874 3 5899999999999999998643110 0112356899999976432 12
Q ss_pred CCCeeEEEECCCcc----------------chhHHHHHhcCCCcEEEEEecC
Q psy10572 122 EAPYDIIHVSPSYF----------------TIPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 122 ~~~~D~v~~~~~~~----------------~~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
.++||+|+.+.... .+.+.+.+.|+|||+++....+
T Consensus 282 ~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s 333 (381)
T 3c6k_A 282 GREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNC 333 (381)
T ss_dssp TCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred cCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecCC
Confidence 35799999874221 1346788999999999875433
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=98.64 E-value=1.2e-07 Score=72.44 Aligned_cols=88 Identities=20% Similarity=0.181 Sum_probs=70.9
Q ss_pred hHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe
Q psy10572 34 PHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW 113 (204)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 113 (204)
+-+...+++.+. ++++..++|.+||.|..+..+++. +++++|+|.++.+++.+++ +.. ++++++++
T Consensus 8 pVLl~e~le~L~--~~~gg~~VD~T~G~GGHS~~il~~---~g~VigiD~Dp~Ai~~A~~-L~~--------~rv~lv~~ 73 (285)
T 1wg8_A 8 PVLYQEALDLLA--VRPGGVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVARAKG-LHL--------PGLTVVQG 73 (285)
T ss_dssp CTTHHHHHHHHT--CCTTCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHH-TCC--------TTEEEEES
T ss_pred hHHHHHHHHhhC--CCCCCEEEEeCCCCcHHHHHHHHC---CCEEEEEeCCHHHHHHHHh-hcc--------CCEEEEEC
Confidence 446677888887 788999999999999999999997 3599999999999999988 532 47999999
Q ss_pred cCCCCC-----CCCCCeeEEEECCCcc
Q psy10572 114 NGKHGY-----EREAPYDIIHVSPSYF 135 (204)
Q Consensus 114 d~~~~~-----~~~~~~D~v~~~~~~~ 135 (204)
++.... ....++|.|+++.++.
T Consensus 74 ~f~~l~~~L~~~g~~~vDgIL~DLGvS 100 (285)
T 1wg8_A 74 NFRHLKRHLAALGVERVDGILADLGVS 100 (285)
T ss_dssp CGGGHHHHHHHTTCSCEEEEEEECSCC
T ss_pred CcchHHHHHHHcCCCCcCEEEeCCccc
Confidence 976431 1125799999887664
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=98.58 E-value=4.7e-07 Score=62.25 Aligned_cols=104 Identities=13% Similarity=0.105 Sum_probs=71.8
Q ss_pred hHHHHHHHHHHhccCCCCCEEEEEcCCCc-HHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEE
Q psy10572 34 PHIHAQMLELLKDKIKPGARILDIGSGSG-YLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVV 112 (204)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~~~vLdiG~G~G-~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 112 (204)
.++...+.+.+.....++.+|||+|||+| ..+..|++.. +..|+++|+++..++ ++.
T Consensus 19 ~~m~e~LaeYI~~~~~~~~rVlEVG~G~g~~vA~~La~~~--g~~V~atDInp~Av~--------------------~v~ 76 (153)
T 2k4m_A 19 SHMWNDLAVYIIRCSGPGTRVVEVGAGRFLYVSDYIRKHS--KVDLVLTDIKPSHGG--------------------IVR 76 (153)
T ss_dssp CHHHHHHHHHHHHHSCSSSEEEEETCTTCCHHHHHHHHHS--CCEEEEECSSCSSTT--------------------EEC
T ss_pred hhHHHHHHHHHHhcCCCCCcEEEEccCCChHHHHHHHHhC--CCeEEEEECCccccc--------------------eEE
Confidence 34556677777766677789999999999 5899888753 358999999886422 677
Q ss_pred ecCCCCCCCC-CCeeEEEECCCccchhHHHHHhc-CCCcEEEEEecCCC
Q psy10572 113 WNGKHGYERE-APYDIIHVSPSYFTIPQKLLDQL-VPGGRMVMPVGEPF 159 (204)
Q Consensus 113 ~d~~~~~~~~-~~~D~v~~~~~~~~~~~~~~~~L-k~gG~l~~~~~~~~ 159 (204)
.|+.....+. ..||+|++.-+-.++...+.++- +-|.-+++...++.
T Consensus 77 dDiF~P~~~~Y~~~DLIYsirPP~El~~~i~~lA~~v~adliI~pL~~E 125 (153)
T 2k4m_A 77 DDITSPRMEIYRGAALIYSIRPPAEIHSSLMRVADAVGARLIIKPLTGE 125 (153)
T ss_dssp CCSSSCCHHHHTTEEEEEEESCCTTTHHHHHHHHHHHTCEEEEECBTTB
T ss_pred ccCCCCcccccCCcCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEcCCCC
Confidence 8876644321 47999977666666554444443 45667777665554
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.54 E-value=3.3e-08 Score=75.26 Aligned_cols=103 Identities=17% Similarity=0.093 Sum_probs=67.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
+.++.+|||+|||+|.++..++... +...++|+|+...+...+... . .. ..++.....+......+..++|+
T Consensus 88 Lk~~~~VLDLGaAPGGWsQvAa~~~-gv~sV~GvdvG~d~~~~pi~~--~----~~-g~~ii~~~~~~dv~~l~~~~~Dv 159 (282)
T 3gcz_A 88 VKPTGIVVDLGCGRGGWSYYAASLK-NVKKVMAFTLGVQGHEKPIMR--T----TL-GWNLIRFKDKTDVFNMEVIPGDT 159 (282)
T ss_dssp CCCCEEEEEETCTTCHHHHHHHTST-TEEEEEEECCCCTTSCCCCCC--C----BT-TGGGEEEECSCCGGGSCCCCCSE
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhc-CCCeeeeEEeccCcccccccc--c----cC-CCceEEeeCCcchhhcCCCCcCE
Confidence 6888899999999999999988765 445789999876532111110 0 00 11333333222212234578999
Q ss_pred EEECCCccc------------hhHHHHHhcCCC--cEEEEEecCC
Q psy10572 128 IHVSPSYFT------------IPQKLLDQLVPG--GRMVMPVGEP 158 (204)
Q Consensus 128 v~~~~~~~~------------~~~~~~~~Lk~g--G~l~~~~~~~ 158 (204)
|+++..... +++-+..+|+|| |.|++.++.+
T Consensus 160 VLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~p 204 (282)
T 3gcz_A 160 LLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLCP 204 (282)
T ss_dssp EEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESCC
T ss_pred EEecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecC
Confidence 999865431 345556889999 9999999984
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=6e-07 Score=68.80 Aligned_cols=105 Identities=17% Similarity=0.095 Sum_probs=66.4
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCee
Q psy10572 47 KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYD 126 (204)
Q Consensus 47 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D 126 (204)
.+.++.+|||+||++|.++..+++.. +...++|+|+........ .... ....+.+.+. .+.........++|
T Consensus 78 l~~~g~~vlDLGaaPGgWsqva~~~~-gv~sV~Gvdlg~~~~~~P--~~~~----~~~~~iv~~~-~~~di~~l~~~~~D 149 (300)
T 3eld_A 78 YLRITGRVLDLGCGRGGWSYYAAAQK-EVMSVKGYTLGIEGHEKP--IHMQ----TLGWNIVKFK-DKSNVFTMPTEPSD 149 (300)
T ss_dssp SCCCCEEEEEETCTTCHHHHHHHTST-TEEEEEEECCCCTTSCCC--CCCC----BTTGGGEEEE-CSCCTTTSCCCCCS
T ss_pred CCCCCCEEEEcCCCCCHHHHHHHHhc-CCceeeeEEecccccccc--cccc----ccCCceEEee-cCceeeecCCCCcC
Confidence 46888999999999999999999865 344788999865321000 0000 0011223332 22111123446899
Q ss_pred EEEECCCcc------------chhHHHHHhcCCC-cEEEEEecCCC
Q psy10572 127 IIHVSPSYF------------TIPQKLLDQLVPG-GRMVMPVGEPF 159 (204)
Q Consensus 127 ~v~~~~~~~------------~~~~~~~~~Lk~g-G~l~~~~~~~~ 159 (204)
+|+++.... .+++-+...|+|| |.|++.++.+.
T Consensus 150 lVlsD~APnsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~~y 195 (300)
T 3eld_A 150 TLLCDIGESSSNPLVERDRTMKVLENFERWKHVNTENFCVKVLAPY 195 (300)
T ss_dssp EEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESSTT
T ss_pred EEeecCcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecccc
Confidence 999975543 1345566899999 99999998843
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.37 E-value=9.1e-07 Score=69.21 Aligned_cols=90 Identities=17% Similarity=0.131 Sum_probs=71.1
Q ss_pred hHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe
Q psy10572 34 PHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW 113 (204)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 113 (204)
+-+...+++.+. ++++..++|.+||.|..+..+++.+++.++++|+|.++.+++.++ ++. ..+++++++
T Consensus 43 pVLl~Evl~~L~--i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL~--------~~Rv~lv~~ 111 (347)
T 3tka_A 43 TVLLDEAVNGLN--IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TID--------DPRFSIIHG 111 (347)
T ss_dssp CTTTHHHHHHTC--CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TCC--------CTTEEEEES
T ss_pred cccHHHHHHhhC--CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hhc--------CCcEEEEeC
Confidence 346677777777 788999999999999999999998767889999999999999984 431 358999999
Q ss_pred cCCCCC---CC---CCCeeEEEECCCc
Q psy10572 114 NGKHGY---ER---EAPYDIIHVSPSY 134 (204)
Q Consensus 114 d~~~~~---~~---~~~~D~v~~~~~~ 134 (204)
++.... .. .+++|.|+++.++
T Consensus 112 nF~~l~~~L~~~g~~~~vDgILfDLGV 138 (347)
T 3tka_A 112 PFSALGEYVAERDLIGKIDGILLDLGV 138 (347)
T ss_dssp CGGGHHHHHHHTTCTTCEEEEEEECSC
T ss_pred CHHHHHHHHHhcCCCCcccEEEECCcc
Confidence 876421 11 1369999988555
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=3.7e-06 Score=67.39 Aligned_cols=104 Identities=13% Similarity=0.042 Sum_probs=68.4
Q ss_pred CCEEEEEcCCCcHHHHHHHHH-------------h---CCCceEEEEEcC-----------HHHHHHHHHHhhhcCcccc
Q psy10572 51 GARILDIGSGSGYLTACLAYM-------------A---GPEGRVYGVEHV-----------MELAESSIKNIDKGNSELL 103 (204)
Q Consensus 51 ~~~vLdiG~G~G~~~~~l~~~-------------~---~~~~~v~~vD~~-----------~~~~~~a~~~~~~~~~~~~ 103 (204)
..+|+|+||++|..+..+... . .|..+++..|+- +...+.+++.. +
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~---g---- 125 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKEN---G---- 125 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHT---C----
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhc---c----
Confidence 479999999999998877665 1 145678888876 33333322211 1
Q ss_pred CccceEEEEec---CCCCCCCCCCeeEEEECCCccchh------H-----------------------HH----------
Q psy10572 104 DQGRVQFVVWN---GKHGYEREAPYDIIHVSPSYFTIP------Q-----------------------KL---------- 141 (204)
Q Consensus 104 ~~~~~~~~~~d---~~~~~~~~~~~D~v~~~~~~~~~~------~-----------------------~~---------- 141 (204)
...+.-|+.+. +....++.+++|+|+++..++|+. . ++
T Consensus 126 ~~~~~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~ 205 (384)
T 2efj_A 126 RKIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFT 205 (384)
T ss_dssp CCTTSEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCceEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHH
Confidence 00123444443 334567889999999999988732 0 12
Q ss_pred ------HHhcCCCcEEEEEecCCCCc
Q psy10572 142 ------LDQLVPGGRMVMPVGEPFKG 161 (204)
Q Consensus 142 ------~~~Lk~gG~l~~~~~~~~~~ 161 (204)
.+.|+|||++++++......
T Consensus 206 ~FL~~Ra~eL~pGG~mvl~~~gr~~~ 231 (384)
T 2efj_A 206 TFLRIHSEELISRGRMLLTFICKEDE 231 (384)
T ss_dssp HHHHHHHHHEEEEEEEEEEEECCCTT
T ss_pred HHHHHHHHHhccCCeEEEEEecCCCc
Confidence 68899999999999866543
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=4.6e-06 Score=66.24 Aligned_cols=73 Identities=18% Similarity=0.146 Sum_probs=57.6
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
++++.++||+||++|+++..++++. +.|++||..+-. . .+. ..++++++++|.....++..++|+
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~rg---~~V~aVD~~~l~-~----~l~-------~~~~V~~~~~d~~~~~~~~~~~D~ 273 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKRN---MWVYSVDNGPMA-Q----SLM-------DTGQVTWLREDGFKFRPTRSNISW 273 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHTT---CEEEEECSSCCC-H----HHH-------TTTCEEEECSCTTTCCCCSSCEEE
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHCC---CEEEEEEhhhcC-h----hhc-------cCCCeEEEeCccccccCCCCCcCE
Confidence 6889999999999999999999864 499999976421 1 111 136899999998877666678999
Q ss_pred EEECCCcc
Q psy10572 128 IHVSPSYF 135 (204)
Q Consensus 128 v~~~~~~~ 135 (204)
|+++-...
T Consensus 274 vvsDm~~~ 281 (375)
T 4auk_A 274 MVCDMVEK 281 (375)
T ss_dssp EEECCSSC
T ss_pred EEEcCCCC
Confidence 99987654
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=9.5e-07 Score=66.32 Aligned_cols=106 Identities=15% Similarity=0.060 Sum_probs=64.1
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe-cCCCCCCCCCCe
Q psy10572 47 KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW-NGKHGYEREAPY 125 (204)
Q Consensus 47 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~ 125 (204)
.++|+.+|+|+||++|.++.++++..+ -+.+.|.++.... . ..+ .... ..+..-+.+.++ |+... +..++
T Consensus 70 likpg~~VVDLGaAPGGWSQvAa~~~~-vg~V~G~vig~D~-~-~~P---~~~~-~~Gv~~i~~~~G~Df~~~--~~~~~ 140 (269)
T 2px2_A 70 FVQPIGKVVDLGCGRGGWSYYAATMKN-VQEVRGYTKGGPG-H-EEP---MLMQ-SYGWNIVTMKSGVDVFYK--PSEIS 140 (269)
T ss_dssp SCCCCEEEEEETCTTSHHHHHHTTSTT-EEEEEEECCCSTT-S-CCC---CCCC-STTGGGEEEECSCCGGGS--CCCCC
T ss_pred CCCCCCEEEEcCCCCCHHHHHHhhhcC-CCCceeEEEcccc-c-cCC---Cccc-CCCceEEEeeccCCccCC--CCCCC
Confidence 479999999999999999999998721 1133444332220 0 000 0000 001122355556 87653 23579
Q ss_pred eEEEECCCccc------------hhHHHHHhcCCCc-EEEEEecCCCCc
Q psy10572 126 DIIHVSPSYFT------------IPQKLLDQLVPGG-RMVMPVGEPFKG 161 (204)
Q Consensus 126 D~v~~~~~~~~------------~~~~~~~~Lk~gG-~l~~~~~~~~~~ 161 (204)
|+|+++..-.. .++-+.+.|+||| .+++-++.+...
T Consensus 141 DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFqg~~~ 189 (269)
T 2px2_A 141 DTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILCPYMP 189 (269)
T ss_dssp SEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTTSH
T ss_pred CEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECCCCch
Confidence 99999853311 2345568899999 999999886433
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=98.23 E-value=1.7e-06 Score=68.72 Aligned_cols=106 Identities=20% Similarity=0.166 Sum_probs=72.8
Q ss_pred CCEEEEEcCCCcHHHHHHHHH---------------hCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEE---
Q psy10572 51 GARILDIGSGSGYLTACLAYM---------------AGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVV--- 112 (204)
Q Consensus 51 ~~~vLdiG~G~G~~~~~l~~~---------------~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--- 112 (204)
..+|+|+||++|..+..+... -.|..+++..|+-......+-+.+..... ..+.-|+.
T Consensus 52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~----~~~~~f~~gvp 127 (359)
T 1m6e_X 52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEND----VDGVCFINGVP 127 (359)
T ss_dssp EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCS----CTTCEEEEEEE
T ss_pred ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcc----cCCCEEEEecc
Confidence 368999999999766554333 13567899999888877777666543110 00223433
Q ss_pred ecCCCCCCCCCCeeEEEECCCccch---------------------------------------hHHHHHhcCCCcEEEE
Q psy10572 113 WNGKHGYEREAPYDIIHVSPSYFTI---------------------------------------PQKLLDQLVPGGRMVM 153 (204)
Q Consensus 113 ~d~~~~~~~~~~~D~v~~~~~~~~~---------------------------------------~~~~~~~Lk~gG~l~~ 153 (204)
+.+....++.+++|+|+++..++|+ ++.-.+.|+|||++++
T Consensus 128 gSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl 207 (359)
T 1m6e_X 128 GSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVL 207 (359)
T ss_dssp SCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEE
T ss_pred hhhhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEE
Confidence 3444567888999999999888773 2233788999999999
Q ss_pred EecCCCC
Q psy10572 154 PVGEPFK 160 (204)
Q Consensus 154 ~~~~~~~ 160 (204)
++.....
T Consensus 208 ~~~gr~~ 214 (359)
T 1m6e_X 208 TILGRRS 214 (359)
T ss_dssp EEEECSS
T ss_pred EEecCCC
Confidence 8875543
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.22 E-value=1.3e-05 Score=63.68 Aligned_cols=78 Identities=13% Similarity=0.128 Sum_probs=64.1
Q ss_pred cccCChHHHHHHHHHHhccCC------CCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccc
Q psy10572 29 ADISSPHIHAQMLELLKDKIK------PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSEL 102 (204)
Q Consensus 29 ~~~~~~~~~~~~~~~l~~~~~------~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~ 102 (204)
.++..+.+...+++.+. +. ++..|||||.|.|.+|..++... ...+++++|+++.++...++.. .
T Consensus 33 nFL~d~~i~~~Iv~~~~--l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~-~~~~vvavE~D~~l~~~L~~~~-~----- 103 (353)
T 1i4w_A 33 KYLWNPTVYNKIFDKLD--LTKTYKHPEELKVLDLYPGVGIQSAIFYNKY-CPRQYSLLEKRSSLYKFLNAKF-E----- 103 (353)
T ss_dssp CCBCCHHHHHHHHHHHC--GGGTCCCTTTCEEEEESCTTCHHHHHHHHHH-CCSEEEEECCCHHHHHHHHHHT-T-----
T ss_pred CccCCHHHHHHHHHhcc--CCcccCcCCCCEEEEECCCCCHHHHHHHhhC-CCCEEEEEecCHHHHHHHHHhc-c-----
Confidence 35578889999999987 43 35899999999999999999875 2348999999999999888765 2
Q ss_pred cCccceEEEEecCCC
Q psy10572 103 LDQGRVQFVVWNGKH 117 (204)
Q Consensus 103 ~~~~~~~~~~~d~~~ 117 (204)
.++++++++|+..
T Consensus 104 --~~~l~ii~~D~l~ 116 (353)
T 1i4w_A 104 --GSPLQILKRDPYD 116 (353)
T ss_dssp --TSSCEEECSCTTC
T ss_pred --CCCEEEEECCccc
Confidence 2589999999853
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.22 E-value=1.4e-05 Score=63.89 Aligned_cols=109 Identities=15% Similarity=0.005 Sum_probs=69.6
Q ss_pred CCEEEEEcCCCcHHHHHHHH--------Hh------CCCceEEEEEcCHHHHHHHHHHhhhcCcc-------c-cCccc-
Q psy10572 51 GARILDIGSGSGYLTACLAY--------MA------GPEGRVYGVEHVMELAESSIKNIDKGNSE-------L-LDQGR- 107 (204)
Q Consensus 51 ~~~vLdiG~G~G~~~~~l~~--------~~------~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-------~-~~~~~- 107 (204)
..+|+|+|||+|..+..+.. .. .+..+++..|+-.......-+.+...... . ...+.
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 47999999999998877632 11 14568888897666544443333321100 0 00011
Q ss_pred -eEEEEecCCCCCCCCCCeeEEEECCCccchh--------------------------------------------HHHH
Q psy10572 108 -VQFVVWNGKHGYEREAPYDIIHVSPSYFTIP--------------------------------------------QKLL 142 (204)
Q Consensus 108 -~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~--------------------------------------------~~~~ 142 (204)
+.-+.+.+....++.+++|+|+++..++|+. +...
T Consensus 133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra 212 (374)
T 3b5i_A 133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA 212 (374)
T ss_dssp EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1223333445567889999999999988742 2347
Q ss_pred HhcCCCcEEEEEecCCC
Q psy10572 143 DQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 143 ~~Lk~gG~l~~~~~~~~ 159 (204)
+.|+|||++++++....
T Consensus 213 ~eL~pGG~mvl~~~gr~ 229 (374)
T 3b5i_A 213 AEVKRGGAMFLVCLGRT 229 (374)
T ss_dssp HHEEEEEEEEEEEEECC
T ss_pred HHhCCCCEEEEEEecCC
Confidence 89999999999987654
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=1.6e-05 Score=58.95 Aligned_cols=110 Identities=14% Similarity=0.073 Sum_probs=75.2
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe-cCCCCCCCCCCee
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW-NGKHGYEREAPYD 126 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~D 126 (204)
++++..|+|+||++|.++.+++...+ ...|+|+|+...--+. +.. ....+.+.++|..+ |...... .++|
T Consensus 76 l~~g~~VvDLGaapGGWSq~~a~~~g-~~~V~avdvG~~ghe~--P~~----~~s~gwn~v~fk~gvDv~~~~~--~~~D 146 (267)
T 3p8z_A 76 VIPEGRVIDLGCGRGGWSYYCAGLKK-VTEVRGYTKGGPGHEE--PVP----MSTYGWNIVKLMSGKDVFYLPP--EKCD 146 (267)
T ss_dssp SCCCEEEEEESCTTSHHHHHHHTSTT-EEEEEEECCCSTTSCC--CCC----CCCTTTTSEEEECSCCGGGCCC--CCCS
T ss_pred CCCCCEEEEcCCCCCcHHHHHHHhcC-CCEEEEEecCCCCccC--cch----hhhcCcCceEEEeccceeecCC--cccc
Confidence 68899999999999999998888763 3489999986642110 000 00124578999998 8543322 6799
Q ss_pred EEEECCCccc------------hhHHHHHhcCCCcEEEEEecCCCCcceEEEE
Q psy10572 127 IIHVSPSYFT------------IPQKLLDQLVPGGRMVMPVGEPFKGQNLTII 167 (204)
Q Consensus 127 ~v~~~~~~~~------------~~~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~ 167 (204)
.|+|+..-.. .++.+.+.|++ |-+.+-+..+...+.++.+
T Consensus 147 tllcDIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~py~p~v~e~l 198 (267)
T 3p8z_A 147 TLLCDIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNPYMPTVIEHL 198 (267)
T ss_dssp EEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCCCSHHHHHHH
T ss_pred EEEEecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccCCChhHHHHH
Confidence 9999865422 33455688888 7888889888764443333
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=98.16 E-value=1.3e-05 Score=61.34 Aligned_cols=112 Identities=14% Similarity=0.112 Sum_probs=75.2
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe-cCCCCCCCCCCee
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW-NGKHGYEREAPYD 126 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~D 126 (204)
++++..|||+||++|.++.+++...+ ...|+|+|+...--+. +.. ...+....+.++.+ |+..... .++|
T Consensus 92 l~~~~~VlDLGaapGGwsq~~~~~~g-v~~V~avdvG~~~he~--P~~----~~ql~w~lV~~~~~~Dv~~l~~--~~~D 162 (321)
T 3lkz_A 92 LEPVGKVIDLGCGRGGWCYYMATQKR-VQEVRGYTKGGPGHEE--PQL----VQSYGWNIVTMKSGVDVFYRPS--ECCD 162 (321)
T ss_dssp CCCCEEEEEETCTTCHHHHHHTTCTT-EEEEEEECCCSTTSCC--CCC----CCBTTGGGEEEECSCCTTSSCC--CCCS
T ss_pred CCCCCEEEEeCCCCCcHHHHHHhhcC-CCEEEEEEcCCCCccC--cch----hhhcCCcceEEEeccCHhhCCC--CCCC
Confidence 68888999999999999998888763 3489999986541100 000 00123356888887 7544332 6699
Q ss_pred EEEECCCccc------------hhHHHHHhcCCC-cEEEEEecCCCCcceEEEEe
Q psy10572 127 IIHVSPSYFT------------IPQKLLDQLVPG-GRMVMPVGEPFKGQNLTIID 168 (204)
Q Consensus 127 ~v~~~~~~~~------------~~~~~~~~Lk~g-G~l~~~~~~~~~~~~~~~~~ 168 (204)
+|+|+..-.. .++.+.+.|++| |-+++-+..+.....++.++
T Consensus 163 ~ivcDigeSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~pY~~~v~e~l~ 217 (321)
T 3lkz_A 163 TLLCDIGESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCPYMPKVIEKME 217 (321)
T ss_dssp EEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTSHHHHHHHH
T ss_pred EEEEECccCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCCCChHHHHHHH
Confidence 9999866321 334556888999 99999999886655544443
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=98.08 E-value=1.2e-05 Score=62.58 Aligned_cols=57 Identities=21% Similarity=0.281 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhh
Q psy10572 35 HIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97 (204)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~ 97 (204)
.+...++... ..++..|||++||+|..+..+++.. .+++|+|+++.+++.|++++..
T Consensus 223 ~l~~~~i~~~---~~~~~~vlD~f~GsGt~~~~a~~~g---~~~~g~e~~~~~~~~a~~r~~~ 279 (297)
T 2zig_A 223 ELAERLVRMF---SFVGDVVLDPFAGTGTTLIAAARWG---RRALGVELVPRYAQLAKERFAR 279 (297)
T ss_dssp HHHHHHHHHH---CCTTCEEEETTCTTTHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh---CCCCCEEEECCCCCCHHHHHHHHcC---CeEEEEeCCHHHHHHHHHHHHH
Confidence 4455555544 3688899999999999999988865 3999999999999999999876
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=97.81 E-value=6.7e-05 Score=57.44 Aligned_cols=94 Identities=11% Similarity=0.073 Sum_probs=63.1
Q ss_pred CCCCCEEEEEcC------CCcHHHHHHHHHhCCC-ceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCC
Q psy10572 48 IKPGARILDIGS------GSGYLTACLAYMAGPE-GRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE 120 (204)
Q Consensus 48 ~~~~~~vLdiG~------G~G~~~~~l~~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 120 (204)
.+.+.+|||+|+ .+|. .+++...+. +.++++|+.+-. .... .++++|+.....
T Consensus 107 vp~gmrVLDLGA~s~kg~APGS---~VLr~~~p~g~~VVavDL~~~~----------------sda~-~~IqGD~~~~~~ 166 (344)
T 3r24_A 107 VPYNMRVIHFGAGSDKGVAPGT---AVLRQWLPTGTLLVDSDLNDFV----------------SDAD-STLIGDCATVHT 166 (344)
T ss_dssp CCTTCEEEEESCCCTTSBCHHH---HHHHHHSCTTCEEEEEESSCCB----------------CSSS-EEEESCGGGEEE
T ss_pred ecCCCEEEeCCCCCCCCCCCcH---HHHHHhCCCCcEEEEeeCcccc----------------cCCC-eEEEcccccccc
Confidence 367789999997 4566 243433465 699999987732 0123 448899654322
Q ss_pred CCCCeeEEEECCCc-------------cch----hHHHHHhcCCCcEEEEEecCCCCcc
Q psy10572 121 REAPYDIIHVSPSY-------------FTI----PQKLLDQLVPGGRMVMPVGEPFKGQ 162 (204)
Q Consensus 121 ~~~~~D~v~~~~~~-------------~~~----~~~~~~~Lk~gG~l~~~~~~~~~~~ 162 (204)
..+||+|+++-.. ..+ ++-+.+.|+|||.|++-+..+...+
T Consensus 167 -~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGsg~~ 224 (344)
T 3r24_A 167 -ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNA 224 (344)
T ss_dssp -SSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCH
T ss_pred -CCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCCCHH
Confidence 4789999997322 112 2456688999999999998887544
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=97.80 E-value=6.4e-06 Score=63.02 Aligned_cols=107 Identities=16% Similarity=0.085 Sum_probs=77.9
Q ss_pred HHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCC
Q psy10572 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKH 117 (204)
Q Consensus 38 ~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 117 (204)
..+...+.. .+ +..+||+-+|||.+++.+.+.. .+++.+|.++..++..++++.. ..+++++..|...
T Consensus 81 ~~yf~~l~~-~n-~~~~LDlfaGSGaLgiEaLS~~---d~~vfvE~~~~a~~~L~~Nl~~-------~~~~~V~~~D~~~ 148 (283)
T 2oo3_A 81 LEYISVIKQ-IN-LNSTLSYYPGSPYFAINQLRSQ---DRLYLCELHPTEYNFLLKLPHF-------NKKVYVNHTDGVS 148 (283)
T ss_dssp HHHHHHHHH-HS-SSSSCCEEECHHHHHHHHSCTT---SEEEEECCSHHHHHHHTTSCCT-------TSCEEEECSCHHH
T ss_pred HHHHHHHHH-hc-CCCceeEeCCcHHHHHHHcCCC---CeEEEEeCCHHHHHHHHHHhCc-------CCcEEEEeCcHHH
Confidence 345555553 23 4568999999999999988843 4999999999999999988764 3579999999653
Q ss_pred C----CCCCCCeeEEEECCCccc--hhH----HHH--HhcCCCcEEEEEec
Q psy10572 118 G----YEREAPYDIIHVSPSYFT--IPQ----KLL--DQLVPGGRMVMPVG 156 (204)
Q Consensus 118 ~----~~~~~~~D~v~~~~~~~~--~~~----~~~--~~Lk~gG~l~~~~~ 156 (204)
. ..+..+||+|++++++.. ..+ .+. ..+.++|++++=++
T Consensus 149 ~L~~l~~~~~~fdLVfiDPPYe~k~~~~~vl~~L~~~~~r~~~Gi~v~WYP 199 (283)
T 2oo3_A 149 KLNALLPPPEKRGLIFIDPSYERKEEYKEIPYAIKNAYSKFSTGLYCVWYP 199 (283)
T ss_dssp HHHHHCSCTTSCEEEEECCCCCSTTHHHHHHHHHHHHHHHCTTSEEEEEEE
T ss_pred HHHHhcCCCCCccEEEECCCCCCCcHHHHHHHHHHHhCccCCCeEEEEEEe
Confidence 1 233457999999999973 332 222 34678999988444
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00012 Score=55.66 Aligned_cols=57 Identities=14% Similarity=0.195 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhh
Q psy10572 35 HIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97 (204)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~ 97 (204)
.+...++... ..++..|||..||+|..+..+.+... +++|+|+++..++.+++++..
T Consensus 200 ~l~~~~i~~~---~~~~~~vlD~f~GsGtt~~~a~~~gr---~~ig~e~~~~~~~~~~~r~~~ 256 (260)
T 1g60_A 200 DLIERIIRAS---SNPNDLVLDCFMGSGTTAIVAKKLGR---NFIGCDMNAEYVNQANFVLNQ 256 (260)
T ss_dssp HHHHHHHHHH---CCTTCEEEESSCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHC
T ss_pred HHHHHHHHHh---CCCCCEEEECCCCCCHHHHHHHHcCC---eEEEEeCCHHHHHHHHHHHHh
Confidence 3444555444 47889999999999999999888653 999999999999999999865
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00096 Score=52.74 Aligned_cols=91 Identities=14% Similarity=0.119 Sum_probs=68.8
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCee
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYD 126 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D 126 (204)
+.++.+||-+|+|. |.++..+++..+ ++|++++.++...+.+++.- ... ++ .+. +. .. ..+|
T Consensus 174 ~~~g~~VlV~GaG~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~~lG---------a~~--v~-~~~-~~-~~-~~~D 236 (348)
T 3two_A 174 VTKGTKVGVAGFGGLGSMAVKYAVAMG--AEVSVFARNEHKKQDALSMG---------VKH--FY-TDP-KQ-CK-EELD 236 (348)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHTT--CEEEEECSSSTTHHHHHHTT---------CSE--EE-SSG-GG-CC-SCEE
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHhcC---------CCe--ec-CCH-HH-Hh-cCCC
Confidence 68899999999986 888888888764 59999999999888886532 111 12 221 11 11 2799
Q ss_pred EEEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 127 IIHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 127 ~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
+|+-..+.....+.+.+.|+++|++++.-
T Consensus 237 ~vid~~g~~~~~~~~~~~l~~~G~iv~~G 265 (348)
T 3two_A 237 FIISTIPTHYDLKDYLKLLTYNGDLALVG 265 (348)
T ss_dssp EEEECCCSCCCHHHHHTTEEEEEEEEECC
T ss_pred EEEECCCcHHHHHHHHHHHhcCCEEEEEC
Confidence 99988887778899999999999998853
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00046 Score=55.13 Aligned_cols=92 Identities=17% Similarity=0.144 Sum_probs=67.0
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe---cCCCCCCCCC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW---NGKHGYEREA 123 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---d~~~~~~~~~ 123 (204)
+.++.+||-+|+|. |.++..+++..+ ++|++++.++..++.+++.-.. .++.. +...... .
T Consensus 192 ~~~g~~VlV~GaG~vG~~aiqlak~~G--a~Vi~~~~~~~~~~~a~~lGa~-----------~vi~~~~~~~~~~~~--~ 256 (369)
T 1uuf_A 192 AGPGKKVGVVGIGGLGHMGIKLAHAMG--AHVVAFTTSEAKREAAKALGAD-----------EVVNSRNADEMAAHL--K 256 (369)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSGGGHHHHHHHTCS-----------EEEETTCHHHHHTTT--T
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHcCCc-----------EEeccccHHHHHHhh--c
Confidence 68899999999986 788888888753 5899999999988888753211 11111 1111111 4
Q ss_pred CeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 124 PYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 124 ~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
.+|+|+...+.....+.+.+.|+++|+++..
T Consensus 257 g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~ 287 (369)
T 1uuf_A 257 SFDFILNTVAAPHNLDDFTTLLKRDGTMTLV 287 (369)
T ss_dssp CEEEEEECCSSCCCHHHHHTTEEEEEEEEEC
T ss_pred CCCEEEECCCCHHHHHHHHHHhccCCEEEEe
Confidence 6999998887777788999999999998764
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0017 Score=51.43 Aligned_cols=94 Identities=14% Similarity=0.083 Sum_probs=67.4
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEec------CCCC--
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWN------GKHG-- 118 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d------~~~~-- 118 (204)
+.++.+||-+|+|. |.++..+++..+ ..+|+++|.++..++.+++.-. + .++..+ ..+.
T Consensus 169 ~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~~lGa---------~--~vi~~~~~~~~~~~~~i~ 236 (356)
T 1pl8_A 169 VTLGHKVLVCGAGPIGMVTLLVAKAMG-AAQVVVTDLSATRLSKAKEIGA---------D--LVLQISKESPQEIARKVE 236 (356)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHHTTC---------S--EEEECSSCCHHHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHhCC---------C--EEEcCcccccchHHHHHH
Confidence 68899999999986 888888888763 2289999999998888865321 1 112111 0000
Q ss_pred -CCCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 119 -YEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 119 -~~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
... ..+|+|+...+.....+.+.+.|+++|++++.
T Consensus 237 ~~~~-~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~ 272 (356)
T 1pl8_A 237 GQLG-CKPEVTIECTGAEASIQAGIYATRSGGTLVLV 272 (356)
T ss_dssp HHHT-SCCSEEEECSCCHHHHHHHHHHSCTTCEEEEC
T ss_pred HHhC-CCCCEEEECCCChHHHHHHHHHhcCCCEEEEE
Confidence 011 46999998887777788999999999999874
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.004 Score=49.66 Aligned_cols=95 Identities=20% Similarity=0.138 Sum_probs=68.5
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEE---ecCC---CC--
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVV---WNGK---HG-- 118 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~d~~---~~-- 118 (204)
+.++.+||-.|+|. |.++..+++..+ ...|+++|.++...+.+++.-.. .++. .|.. ..
T Consensus 180 ~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~~lGa~-----------~vi~~~~~~~~~~i~~~~ 247 (370)
T 4ej6_A 180 IKAGSTVAILGGGVIGLLTVQLARLAG-ATTVILSTRQATKRRLAEEVGAT-----------ATVDPSAGDVVEAIAGPV 247 (370)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHTCS-----------EEECTTSSCHHHHHHSTT
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHcCCC-----------EEECCCCcCHHHHHHhhh
Confidence 68899999999986 888888888763 23899999999988888764221 1111 1110 01
Q ss_pred CCCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 119 YEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 119 ~~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
....+.+|+|+-..+.....+.+.+.|+++|++++.
T Consensus 248 ~~~~gg~Dvvid~~G~~~~~~~~~~~l~~~G~vv~~ 283 (370)
T 4ej6_A 248 GLVPGGVDVVIECAGVAETVKQSTRLAKAGGTVVIL 283 (370)
T ss_dssp SSSTTCEEEEEECSCCHHHHHHHHHHEEEEEEEEEC
T ss_pred hccCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 011237999998887777889999999999999874
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0035 Score=50.47 Aligned_cols=94 Identities=18% Similarity=0.166 Sum_probs=66.0
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC-------C
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG-------Y 119 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~-------~ 119 (204)
+.++.+||.+|+|. |.++..+++..+ ..+|+++|.++..++.+++.- . .++...-.+. .
T Consensus 183 ~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~~lG---------a---~~i~~~~~~~~~~~~~~~ 249 (398)
T 2dph_A 183 VKPGSHVYIAGAGPVGRCAAAGARLLG-AACVIVGDQNPERLKLLSDAG---------F---ETIDLRNSAPLRDQIDQI 249 (398)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEEESCHHHHHHHHTTT---------C---EEEETTSSSCHHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHcC---------C---cEEcCCCcchHHHHHHHH
Confidence 67899999999987 888888888863 238999999999888876421 1 2222110010 0
Q ss_pred CCCCCeeEEEECCCccc--------------hhHHHHHhcCCCcEEEEE
Q psy10572 120 EREAPYDIIHVSPSYFT--------------IPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 120 ~~~~~~D~v~~~~~~~~--------------~~~~~~~~Lk~gG~l~~~ 154 (204)
.....+|+|+-..+... .++.+.+.|+++|++++.
T Consensus 250 ~~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~ 298 (398)
T 2dph_A 250 LGKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIP 298 (398)
T ss_dssp HSSSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECC
T ss_pred hCCCCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEe
Confidence 11236999998776543 578899999999998763
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0021 Score=51.24 Aligned_cols=94 Identities=15% Similarity=0.132 Sum_probs=67.9
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe---cCCC---CCC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW---NGKH---GYE 120 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---d~~~---~~~ 120 (204)
+.++.+||.+|+|. |.++..+++..+ ...|+++|.++..++.+++.-.. .++.. +..+ ...
T Consensus 188 ~~~g~~VlV~GaG~vG~~a~qlak~~G-a~~Vi~~~~~~~~~~~a~~lGa~-----------~vi~~~~~~~~~~~~~~~ 255 (371)
T 1f8f_A 188 VTPASSFVTWGAGAVGLSALLAAKVCG-ASIIIAVDIVESRLELAKQLGAT-----------HVINSKTQDPVAAIKEIT 255 (371)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHHT-CSEEEEEESCHHHHHHHHHHTCS-----------EEEETTTSCHHHHHHHHT
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHHHcCCC-----------EEecCCccCHHHHHHHhc
Confidence 67889999999986 888888888764 22699999999998888654211 11111 1000 011
Q ss_pred CCCCeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 121 REAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 121 ~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
. +.+|+|+.........+.+.+.|+++|++++.
T Consensus 256 ~-gg~D~vid~~g~~~~~~~~~~~l~~~G~iv~~ 288 (371)
T 1f8f_A 256 D-GGVNFALESTGSPEILKQGVDALGILGKIAVV 288 (371)
T ss_dssp T-SCEEEEEECSCCHHHHHHHHHTEEEEEEEEEC
T ss_pred C-CCCcEEEECCCCHHHHHHHHHHHhcCCEEEEe
Confidence 1 36999998887767789999999999999874
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00096 Score=52.82 Aligned_cols=94 Identities=15% Similarity=0.108 Sum_probs=66.9
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe----cCCCCC---
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW----NGKHGY--- 119 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----d~~~~~--- 119 (204)
+.++.+||-+|+|. |.++..+++..+ ++|+++|.++..++.+++.- .+ .++.. +..+..
T Consensus 166 ~~~g~~VlV~GaG~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~~lG---------a~--~~~~~~~~~~~~~~i~~~ 232 (352)
T 1e3j_A 166 VQLGTTVLVIGAGPIGLVSVLAAKAYG--AFVVCTARSPRRLEVAKNCG---------AD--VTLVVDPAKEEESSIIER 232 (352)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHTT---------CS--EEEECCTTTSCHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHHhC---------CC--EEEcCcccccHHHHHHHH
Confidence 68899999999876 778888888764 47999999999888886432 11 11211 110000
Q ss_pred CC---CCCeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 120 ER---EAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 120 ~~---~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
.. ...+|+|+...+.....+.+.+.|+++|++++.
T Consensus 233 ~~~~~g~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~ 270 (352)
T 1e3j_A 233 IRSAIGDLPNVTIDCSGNEKCITIGINITRTGGTLMLV 270 (352)
T ss_dssp HHHHSSSCCSEEEECSCCHHHHHHHHHHSCTTCEEEEC
T ss_pred hccccCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence 11 246999998887776788999999999999874
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0019 Score=52.33 Aligned_cols=63 Identities=16% Similarity=0.158 Sum_probs=49.2
Q ss_pred CCCCCEEEEEcCCCcHHHHHHH-HHhCCCceEEEEEcCHHHHHHHHHHhhh--cCccccCc-cceEEEEec
Q psy10572 48 IKPGARILDIGSGSGYLTACLA-YMAGPEGRVYGVEHVMELAESSIKNIDK--GNSELLDQ-GRVQFVVWN 114 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~-~~~~~~~~v~~vD~~~~~~~~a~~~~~~--~~~~~~~~-~~~~~~~~d 114 (204)
++++..++|+|++.|..+..++ +..++.++|+++|++|...+..+++++. +. .. ++++++...
T Consensus 224 l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~----~~~~~v~~~~~a 290 (409)
T 2py6_A 224 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDT----NFASRITVHGCG 290 (409)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTS----TTGGGEEEECSE
T ss_pred cCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhcc----CCCCCEEEEEeE
Confidence 3688899999999999999888 4553337999999999999999999876 21 12 466666544
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0015 Score=51.41 Aligned_cols=94 Identities=15% Similarity=0.083 Sum_probs=68.5
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCC---CCC-CC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKH---GYE-RE 122 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~---~~~-~~ 122 (204)
+.++.+||-.|+|. |.++..+++..+ ++|+++|.++...+.+++.-.. .++...-.. ... ..
T Consensus 164 ~~~g~~VlV~GaG~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~~lGa~-----------~~i~~~~~~~~~~~~~~~ 230 (340)
T 3s2e_A 164 TRPGQWVVISGIGGLGHVAVQYARAMG--LRVAAVDIDDAKLNLARRLGAE-----------VAVNARDTDPAAWLQKEI 230 (340)
T ss_dssp CCTTSEEEEECCSTTHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHTTCS-----------EEEETTTSCHHHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHcCCC-----------EEEeCCCcCHHHHHHHhC
Confidence 67899999999986 889999998864 5999999999998888653211 111111000 000 11
Q ss_pred CCeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 123 APYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 123 ~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
+.+|+|+.........+.+.+.|+++|++++.
T Consensus 231 g~~d~vid~~g~~~~~~~~~~~l~~~G~iv~~ 262 (340)
T 3s2e_A 231 GGAHGVLVTAVSPKAFSQAIGMVRRGGTIALN 262 (340)
T ss_dssp SSEEEEEESSCCHHHHHHHHHHEEEEEEEEEC
T ss_pred CCCCEEEEeCCCHHHHHHHHHHhccCCEEEEe
Confidence 36999998887778889999999999999874
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00022 Score=56.37 Aligned_cols=95 Identities=8% Similarity=-0.042 Sum_probs=67.5
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEE----ecCCCCCCCC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVV----WNGKHGYERE 122 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----~d~~~~~~~~ 122 (204)
+ ++.+||-+|+|. |.++..+++...++++|++++.++..++.+++.-.. .++. .+........
T Consensus 169 ~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa~-----------~vi~~~~~~~~~~~~~~g 236 (344)
T 2h6e_A 169 F-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGAD-----------YVSEMKDAESLINKLTDG 236 (344)
T ss_dssp C-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTCS-----------EEECHHHHHHHHHHHHTT
T ss_pred C-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCCC-----------EEeccccchHHHHHhhcC
Confidence 6 899999999985 788888888761135899999999988888753211 1111 1111111112
Q ss_pred CCeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 123 APYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 123 ~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
..+|+|+...+.....+.+.+.|+++|++++.
T Consensus 237 ~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~ 268 (344)
T 2h6e_A 237 LGASIAIDLVGTEETTYNLGKLLAQEGAIILV 268 (344)
T ss_dssp CCEEEEEESSCCHHHHHHHHHHEEEEEEEEEC
T ss_pred CCccEEEECCCChHHHHHHHHHhhcCCEEEEe
Confidence 36999998888776889999999999998774
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0021 Score=51.06 Aligned_cols=97 Identities=13% Similarity=0.014 Sum_probs=70.0
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCce-EEEEEcCHHHHHHHHHHhhhcCccccCccceEEEE-----ecCCC---
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGR-VYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVV-----WNGKH--- 117 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----~d~~~--- 117 (204)
+.++.+||-+|+|. |.++..+++..+ ++ |+++|.++...+.+++. .. .-+.+.. .++.+
T Consensus 177 ~~~g~~VlV~GaG~vG~~aiqlak~~G--a~~Vi~~~~~~~~~~~a~~l-~~--------~~~~~~~~~~~~~~~~~~v~ 245 (363)
T 3m6i_A 177 VRLGDPVLICGAGPIGLITMLCAKAAG--ACPLVITDIDEGRLKFAKEI-CP--------EVVTHKVERLSAEESAKKIV 245 (363)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHHTT--CCSEEEEESCHHHHHHHHHH-CT--------TCEEEECCSCCHHHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CCEEEEECCCHHHHHHHHHh-ch--------hcccccccccchHHHHHHHH
Confidence 68899999999986 888888888763 44 99999999999999876 32 1122211 11110
Q ss_pred CCCCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 118 GYEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 118 ~~~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
.......+|+|+-..+.....+.+.+.|+++|++++.-
T Consensus 246 ~~t~g~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~G 283 (363)
T 3m6i_A 246 ESFGGIEPAVALECTGVESSIAAAIWAVKFGGKVFVIG 283 (363)
T ss_dssp HHTSSCCCSEEEECSCCHHHHHHHHHHSCTTCEEEECC
T ss_pred HHhCCCCCCEEEECCCChHHHHHHHHHhcCCCEEEEEc
Confidence 11223579999988887778899999999999998753
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00041 Score=54.94 Aligned_cols=96 Identities=16% Similarity=0.213 Sum_probs=69.2
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe---cCCC---CCC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW---NGKH---GYE 120 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---d~~~---~~~ 120 (204)
+.++.+||-+|+|. |.++..+++..+ ..+|+++|.++..++.+++.-.. .++.. +..+ ...
T Consensus 164 ~~~g~~VlV~GaG~vG~~a~qla~~~G-a~~Vi~~~~~~~~~~~~~~lGa~-----------~vi~~~~~~~~~~v~~~t 231 (352)
T 3fpc_A 164 IKLGDTVCVIGIGPVGLMSVAGANHLG-AGRIFAVGSRKHCCDIALEYGAT-----------DIINYKNGDIVEQILKAT 231 (352)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHTTT-CSSEEEECCCHHHHHHHHHHTCC-----------EEECGGGSCHHHHHHHHT
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHHhCCc-----------eEEcCCCcCHHHHHHHHc
Confidence 68899999999986 888888888753 22799999999988888764221 11111 1110 112
Q ss_pred CCCCeeEEEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 121 REAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 121 ~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
....+|+|+.........+.+.+.|+++|++++.-
T Consensus 232 ~g~g~D~v~d~~g~~~~~~~~~~~l~~~G~~v~~G 266 (352)
T 3fpc_A 232 DGKGVDKVVIAGGDVHTFAQAVKMIKPGSDIGNVN 266 (352)
T ss_dssp TTCCEEEEEECSSCTTHHHHHHHHEEEEEEEEECC
T ss_pred CCCCCCEEEECCCChHHHHHHHHHHhcCCEEEEec
Confidence 23469999988888788899999999999998753
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00098 Score=52.58 Aligned_cols=97 Identities=11% Similarity=0.040 Sum_probs=70.5
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEec--CCCC---CC
Q psy10572 47 KIKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWN--GKHG---YE 120 (204)
Q Consensus 47 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d--~~~~---~~ 120 (204)
.+.++.+||-+|+|. |.++..+++.. ...+|+++|.++..++.+++.-. . .++..+ ..+. ..
T Consensus 168 ~~~~g~~vlv~GaG~vG~~a~qla~~~-g~~~Vi~~~~~~~~~~~~~~lGa---------~--~~i~~~~~~~~~v~~~t 235 (345)
T 3jv7_A 168 LLGPGSTAVVIGVGGLGHVGIQILRAV-SAARVIAVDLDDDRLALAREVGA---------D--AAVKSGAGAADAIRELT 235 (345)
T ss_dssp GCCTTCEEEEECCSHHHHHHHHHHHHH-CCCEEEEEESCHHHHHHHHHTTC---------S--EEEECSTTHHHHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHcCC---------C--EEEcCCCcHHHHHHHHh
Confidence 368899999999986 88888888887 34699999999999988876321 1 112111 0000 01
Q ss_pred CCCCeeEEEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 121 REAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 121 ~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
....+|+|+-..+.....+.+.+.|+++|++++.-
T Consensus 236 ~g~g~d~v~d~~G~~~~~~~~~~~l~~~G~iv~~G 270 (345)
T 3jv7_A 236 GGQGATAVFDFVGAQSTIDTAQQVVAVDGHISVVG 270 (345)
T ss_dssp GGGCEEEEEESSCCHHHHHHHHHHEEEEEEEEECS
T ss_pred CCCCCeEEEECCCCHHHHHHHHHHHhcCCEEEEEC
Confidence 12369999988888778899999999999998753
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0019 Score=50.89 Aligned_cols=99 Identities=18% Similarity=0.090 Sum_probs=68.1
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCC---CCCCCC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKH---GYEREA 123 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~ 123 (204)
++++.+||-+|+|. |.++..+++.. ..++|+++|.++..++.++..-... -+.....|..+ ......
T Consensus 161 ~~~g~~VlV~GaG~~g~~a~~~a~~~-~g~~Vi~~~~~~~r~~~~~~~Ga~~--------~i~~~~~~~~~~v~~~t~g~ 231 (348)
T 4eez_A 161 VKPGDWQVIFGAGGLGNLAIQYAKNV-FGAKVIAVDINQDKLNLAKKIGADV--------TINSGDVNPVDEIKKITGGL 231 (348)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-SCCEEEEEESCHHHHHHHHHTTCSE--------EEEC-CCCHHHHHHHHTTSS
T ss_pred CCCCCEEEEEcCCCccHHHHHHHHHh-CCCEEEEEECcHHHhhhhhhcCCeE--------EEeCCCCCHHHHhhhhcCCC
Confidence 68899999999987 55666666655 3569999999999888876643220 11111111111 112234
Q ss_pred CeeEEEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 124 PYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 124 ~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
.+|.++.............+.|+++|.+++.-
T Consensus 232 g~d~~~~~~~~~~~~~~~~~~l~~~G~~v~~g 263 (348)
T 4eez_A 232 GVQSAIVCAVARIAFEQAVASLKPMGKMVAVA 263 (348)
T ss_dssp CEEEEEECCSCHHHHHHHHHTEEEEEEEEECC
T ss_pred CceEEEEeccCcchhheeheeecCCceEEEEe
Confidence 68899888888888899999999999988754
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0021 Score=51.49 Aligned_cols=95 Identities=13% Similarity=0.047 Sum_probs=67.5
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe------cCCC---
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW------NGKH--- 117 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~------d~~~--- 117 (204)
+.++.+||-+|+|. |.++..+++..+ .++|++++.++..++.+++.-. . .++.. +..+
T Consensus 193 ~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~~~~lGa---------~--~vi~~~~~~~~~~~~~v~ 260 (380)
T 1vj0_A 193 SFAGKTVVIQGAGPLGLFGVVIARSLG-AENVIVIAGSPNRLKLAEEIGA---------D--LTLNRRETSVEERRKAIM 260 (380)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHTT-BSEEEEEESCHHHHHHHHHTTC---------S--EEEETTTSCHHHHHHHHH
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHcC-CceEEEEcCCHHHHHHHHHcCC---------c--EEEeccccCcchHHHHHH
Confidence 56789999999875 888888888763 2499999999998888864311 1 11111 1100
Q ss_pred CCCCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 118 GYEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 118 ~~~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
.......+|+|+...+.....+.+.+.|+++|++++.
T Consensus 261 ~~~~g~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~ 297 (380)
T 1vj0_A 261 DITHGRGADFILEATGDSRALLEGSELLRRGGFYSVA 297 (380)
T ss_dssp HHTTTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEEC
T ss_pred HHhCCCCCcEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence 0112236999998888777889999999999998774
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0045 Score=49.78 Aligned_cols=94 Identities=15% Similarity=0.145 Sum_probs=65.8
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC-------C
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG-------Y 119 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~-------~ 119 (204)
+.++.+||-+|+|. |.++..+++..+ ...|+++|.++..++.+++.- . .++...-... .
T Consensus 183 ~~~g~~VlV~GaG~vG~~aiqlAk~~G-a~~Vi~~~~~~~~~~~a~~lG---------a---~~i~~~~~~~~~~~v~~~ 249 (398)
T 1kol_A 183 VGPGSTVYVAGAGPVGLAAAASARLLG-AAVVIVGDLNPARLAHAKAQG---------F---EIADLSLDTPLHEQIAAL 249 (398)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHHTT---------C---EEEETTSSSCHHHHHHHH
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCC-CCeEEEEcCCHHHHHHHHHcC---------C---cEEccCCcchHHHHHHHH
Confidence 67889999999986 888888888763 227999999999988886531 1 1221110000 0
Q ss_pred CCCCCeeEEEECCCccc---------------hhHHHHHhcCCCcEEEEE
Q psy10572 120 EREAPYDIIHVSPSYFT---------------IPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 120 ~~~~~~D~v~~~~~~~~---------------~~~~~~~~Lk~gG~l~~~ 154 (204)
.....+|+|+-..+... .++.+.+.|+++|++++.
T Consensus 250 t~g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~ 299 (398)
T 1kol_A 250 LGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP 299 (398)
T ss_dssp HSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred hCCCCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEe
Confidence 11236999998776542 678899999999999764
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0031 Score=50.53 Aligned_cols=94 Identities=20% Similarity=0.076 Sum_probs=65.6
Q ss_pred CEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCC--------CCC
Q psy10572 52 ARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE--------REA 123 (204)
Q Consensus 52 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~ 123 (204)
.+++|+.||.|.++.-+.+... -.+.++|+++.+++..+.|. ++..++.+|+..... ...
T Consensus 3 ~~vidLFsG~GGlslG~~~aG~--~~v~avE~d~~a~~t~~~N~----------~~~~~~~~DI~~~~~~~~~~~~~~~~ 70 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAGF--DVKMAVEIDQHAINTHAINF----------PRSLHVQEDVSLLNAEIIKGFFKNDM 70 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHTC--EEEEEECSCHHHHHHHHHHC----------TTSEEECCCGGGCCHHHHHHHHCSCC
T ss_pred CeEEEEccCcCHHHHHHHHCCC--cEEEEEeCCHHHHHHHHHhC----------CCCceEecChhhcCHHHHHhhcccCC
Confidence 5899999999999998887652 25779999999988887764 245667777664321 235
Q ss_pred CeeEEEECCCccch---------------h---HHHHHhcCCCcEEEEEecC
Q psy10572 124 PYDIIHVSPSYFTI---------------P---QKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 124 ~~D~v~~~~~~~~~---------------~---~~~~~~Lk~gG~l~~~~~~ 157 (204)
.+|+|+.++++..+ . -++...++|.-.++=.+..
T Consensus 71 ~~D~i~ggpPCQ~fS~ag~~~~~d~r~~L~~~~~~~v~~~~P~~~v~ENV~g 122 (376)
T 3g7u_A 71 PIDGIIGGPPCQGFSSIGKGNPDDSRNQLYMHFYRLVSELQPLFFLAENVPG 122 (376)
T ss_dssp CCCEEEECCCCCTTC-------CHHHHHHHHHHHHHHHHHCCSEEEEEECTT
T ss_pred CeeEEEecCCCCCcccccCCCCCCchHHHHHHHHHHHHHhCCCEEEEecchH
Confidence 79999999886431 1 2445567786655544433
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00041 Score=55.15 Aligned_cols=93 Identities=19% Similarity=0.269 Sum_probs=66.6
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe----cCCCCCCCC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW----NGKHGYERE 122 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----d~~~~~~~~ 122 (204)
+.++.+||-+|+|. |.++..+++..+ ++|++++.++..++.+++.-. . .++.. +......
T Consensus 177 ~~~g~~VlV~GaG~vG~~~~qlak~~G--a~Vi~~~~~~~~~~~~~~lGa---------~--~v~~~~~~~~~~~~~~-- 241 (360)
T 1piw_A 177 CGPGKKVGIVGLGGIGSMGTLISKAMG--AETYVISRSSRKREDAMKMGA---------D--HYIATLEEGDWGEKYF-- 241 (360)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHHT--CEEEEEESSSTTHHHHHHHTC---------S--EEEEGGGTSCHHHHSC--
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHHcCC---------C--EEEcCcCchHHHHHhh--
Confidence 67899999999975 888888888764 489999999988888875321 1 11111 1111111
Q ss_pred CCeeEEEECCCc--cchhHHHHHhcCCCcEEEEEe
Q psy10572 123 APYDIIHVSPSY--FTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 123 ~~~D~v~~~~~~--~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
+.+|+|+...+. ....+.+.+.|+++|+++..-
T Consensus 242 ~~~D~vid~~g~~~~~~~~~~~~~l~~~G~iv~~g 276 (360)
T 1piw_A 242 DTFDLIVVCASSLTDIDFNIMPKAMKVGGRIVSIS 276 (360)
T ss_dssp SCEEEEEECCSCSTTCCTTTGGGGEEEEEEEEECC
T ss_pred cCCCEEEECCCCCcHHHHHHHHHHhcCCCEEEEec
Confidence 469999988776 567788899999999987643
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0057 Score=48.63 Aligned_cols=92 Identities=14% Similarity=0.118 Sum_probs=66.4
Q ss_pred CCCEEEEEc-CCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe--cCC---CCCCCC
Q psy10572 50 PGARILDIG-SGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW--NGK---HGYERE 122 (204)
Q Consensus 50 ~~~~vLdiG-~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--d~~---~~~~~~ 122 (204)
++.+||-.| +|. |.++..+++.. ..++|++++.++..++.+++.-.. .++.. +.. ... ..
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~-~g~~Vi~~~~~~~~~~~~~~lGad-----------~vi~~~~~~~~~v~~~-~~ 237 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQR-TDLTVIATASRPETQEWVKSLGAH-----------HVIDHSKPLAAEVAAL-GL 237 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHH-CCSEEEEECSSHHHHHHHHHTTCS-----------EEECTTSCHHHHHHTT-CS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHcCCC-----------EEEeCCCCHHHHHHHh-cC
Confidence 678999998 665 88899999875 346999999999988888653211 11111 100 111 23
Q ss_pred CCeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 123 APYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 123 ~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
+.+|+|+...+.....+.+.++|+++|++++.
T Consensus 238 ~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 238 GAPAFVFSTTHTDKHAAEIADLIAPQGRFCLI 269 (363)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHSCTTCEEEEC
T ss_pred CCceEEEECCCchhhHHHHHHHhcCCCEEEEE
Confidence 57999998887777889999999999999875
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0059 Score=48.47 Aligned_cols=94 Identities=15% Similarity=0.128 Sum_probs=67.0
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCC------CCC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKH------GYE 120 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~------~~~ 120 (204)
++++.+||-+|+|. |..+..+++..+ +++++++.++..++.+++.-. . .++..+... ...
T Consensus 187 ~~~g~~VlV~G~G~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~~lGa---------~--~vi~~~~~~~~~~v~~~~ 253 (363)
T 3uog_A 187 LRAGDRVVVQGTGGVALFGLQIAKATG--AEVIVTSSSREKLDRAFALGA---------D--HGINRLEEDWVERVYALT 253 (363)
T ss_dssp CCTTCEEEEESSBHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHTC---------S--EEEETTTSCHHHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEecCchhHHHHHHcCC---------C--EEEcCCcccHHHHHHHHh
Confidence 67889999999886 888888888763 599999999998888765321 1 122211000 011
Q ss_pred CCCCeeEEEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 121 REAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 121 ~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
....+|+|+...+ ....+.+.+.|+++|++++.-
T Consensus 254 ~g~g~D~vid~~g-~~~~~~~~~~l~~~G~iv~~G 287 (363)
T 3uog_A 254 GDRGADHILEIAG-GAGLGQSLKAVAPDGRISVIG 287 (363)
T ss_dssp TTCCEEEEEEETT-SSCHHHHHHHEEEEEEEEEEC
T ss_pred CCCCceEEEECCC-hHHHHHHHHHhhcCCEEEEEe
Confidence 2246999998777 567788999999999998753
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0022 Score=49.86 Aligned_cols=88 Identities=16% Similarity=0.091 Sum_probs=60.9
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCee
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYD 126 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D 126 (204)
++++.+||-.|+|. |.++..+++..+ ++|++++ ++...+.+++.-.. .++. | .+.. ...+|
T Consensus 140 ~~~g~~VlV~GaG~vG~~a~qlak~~G--a~Vi~~~-~~~~~~~~~~lGa~-----------~v~~-d-~~~v--~~g~D 201 (315)
T 3goh_A 140 LTKQREVLIVGFGAVNNLLTQMLNNAG--YVVDLVS-ASLSQALAAKRGVR-----------HLYR-E-PSQV--TQKYF 201 (315)
T ss_dssp CCSCCEEEEECCSHHHHHHHHHHHHHT--CEEEEEC-SSCCHHHHHHHTEE-----------EEES-S-GGGC--CSCEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEE-ChhhHHHHHHcCCC-----------EEEc-C-HHHh--CCCcc
Confidence 57889999999975 888888988874 4999999 88888888663211 1122 3 2222 46799
Q ss_pred EEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 127 IIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 127 ~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
+|+-..+.... ..+.++|+++|++++.
T Consensus 202 vv~d~~g~~~~-~~~~~~l~~~G~~v~~ 228 (315)
T 3goh_A 202 AIFDAVNSQNA-AALVPSLKANGHIICI 228 (315)
T ss_dssp EEECC--------TTGGGEEEEEEEEEE
T ss_pred EEEECCCchhH-HHHHHHhcCCCEEEEE
Confidence 99876655444 6788999999999886
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0075 Score=47.38 Aligned_cols=92 Identities=21% Similarity=0.113 Sum_probs=66.3
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCC-----
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYER----- 121 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~----- 121 (204)
+.++.+||-+|+|. |..+..+++..+ +++++++.++..++.+++.- .. .++ |.......
T Consensus 162 ~~~g~~VlV~GaG~vG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~~~lG---------a~--~~~--d~~~~~~~~~~~~ 226 (339)
T 1rjw_A 162 AKPGEWVAIYGIGGLGHVAVQYAKAMG--LNVVAVDIGDEKLELAKELG---------AD--LVV--NPLKEDAAKFMKE 226 (339)
T ss_dssp CCTTCEEEEECCSTTHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHTT---------CS--EEE--CTTTSCHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHCC---------CC--EEe--cCCCccHHHHHHH
Confidence 68899999999975 788888888753 59999999999888876421 11 111 21111000
Q ss_pred -CCCeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 122 -EAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 122 -~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
.+.+|+|+...+.....+.+.+.|+++|++++.
T Consensus 227 ~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~ 260 (339)
T 1rjw_A 227 KVGGVHAAVVTAVSKPAFQSAYNSIRRGGACVLV 260 (339)
T ss_dssp HHSSEEEEEESSCCHHHHHHHHHHEEEEEEEEEC
T ss_pred HhCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEe
Confidence 036999999888767788999999999998764
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.016 Score=43.84 Aligned_cols=109 Identities=12% Similarity=0.140 Sum_probs=69.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHH---h---CCCceEEEEE-----cCHH-------------------HHHHHHHHhhhc
Q psy10572 49 KPGARILDIGSGSGYLTACLAYM---A---GPEGRVYGVE-----HVME-------------------LAESSIKNIDKG 98 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~---~---~~~~~v~~vD-----~~~~-------------------~~~~a~~~~~~~ 98 (204)
.-...|+|+|+-.|..+..++.. + ++..+++++| +.+. ..+..++.+...
T Consensus 68 ~vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~ 147 (257)
T 3tos_A 68 DVPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAH 147 (257)
T ss_dssp TSCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHH
T ss_pred CCCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHH
Confidence 55679999999999988876553 1 2456999999 3221 001111111100
Q ss_pred -Ccccc--CccceEEEEecCCCCC------CCCCCeeEEEECCCccc----hhHHHHHhcCCCcEEEEEecC
Q psy10572 99 -NSELL--DQGRVQFVVWNGKHGY------EREAPYDIIHVSPSYFT----IPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 99 -~~~~~--~~~~~~~~~~d~~~~~------~~~~~~D~v~~~~~~~~----~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
..... ...+++++.+++.+.. .+..++|+++++..... .++.+...|+|||++++.-..
T Consensus 148 ~~~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~Y~~t~~~le~~~p~l~~GGvIv~DD~~ 219 (257)
T 3tos_A 148 ECSDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDLYEPTKAVLEAIRPYLTKGSIVAFDELD 219 (257)
T ss_dssp HTTSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEESSTT
T ss_pred hhhhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcccchHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 00001 1368999999976543 23457999999997632 357888999999999996653
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0039 Score=48.82 Aligned_cols=58 Identities=16% Similarity=0.139 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhh
Q psy10572 34 PHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97 (204)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~ 97 (204)
..+...++... .+++..|||..||+|..+..+.+... +.+|+|+++..++.+++++..
T Consensus 239 ~~l~~~~i~~~---~~~~~~VlDpF~GsGtt~~aa~~~gr---~~ig~e~~~~~~~~~~~r~~~ 296 (323)
T 1boo_A 239 AKLPEFFIRML---TEPDDLVVDIFGGSNTTGLVAERESR---KWISFEMKPEYVAASAFRFLD 296 (323)
T ss_dssp THHHHHHHHHH---CCTTCEEEETTCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHGGGSC
T ss_pred HHHHHHHHHHh---CCCCCEEEECCCCCCHHHHHHHHcCC---CEEEEeCCHHHHHHHHHHHHh
Confidence 44555555444 47899999999999999988887653 999999999999999999865
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.011 Score=46.50 Aligned_cols=96 Identities=13% Similarity=0.014 Sum_probs=68.3
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCC------CCCC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGK------HGYE 120 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~------~~~~ 120 (204)
+.++.+||-.|+|. |.++..+++..+ ...++++|.++..++.+++.-.. .++...-. ....
T Consensus 158 ~~~g~~VlV~GaG~vG~~aiq~ak~~G-~~~vi~~~~~~~k~~~a~~lGa~-----------~~i~~~~~~~~~~~~~~~ 225 (346)
T 4a2c_A 158 GCENKNVIIIGAGTIGLLAIQCAVALG-AKSVTAIDISSEKLALAKSFGAM-----------QTFNSSEMSAPQMQSVLR 225 (346)
T ss_dssp CCTTSEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHHTTCS-----------EEEETTTSCHHHHHHHHG
T ss_pred cCCCCEEEEECCCCcchHHHHHHHHcC-CcEEEEEechHHHHHHHHHcCCe-----------EEEeCCCCCHHHHHHhhc
Confidence 68899999999986 777788888763 34678999999998888764221 11111100 0011
Q ss_pred CCCCeeEEEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 121 REAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 121 ~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
....+|+|+...+.....+.+.++|+++|.+++.-
T Consensus 226 ~~~g~d~v~d~~G~~~~~~~~~~~l~~~G~~v~~g 260 (346)
T 4a2c_A 226 ELRFNQLILETAGVPQTVELAVEIAGPHAQLALVG 260 (346)
T ss_dssp GGCSSEEEEECSCSHHHHHHHHHHCCTTCEEEECC
T ss_pred ccCCcccccccccccchhhhhhheecCCeEEEEEe
Confidence 23468999888887888899999999999998743
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0044 Score=49.49 Aligned_cols=96 Identities=21% Similarity=0.199 Sum_probs=68.4
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEec-----CCCCC--
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWN-----GKHGY-- 119 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d-----~~~~~-- 119 (204)
+.++.+||-+|+|. |.++..+++..+ ..+|+++|.++..++.+++.-.. .++... ..+..
T Consensus 191 ~~~g~~VlV~GaG~vG~~a~q~a~~~G-a~~Vi~~~~~~~~~~~a~~lGa~-----------~vi~~~~~~~~~~~~i~~ 258 (378)
T 3uko_A 191 VEPGSNVAIFGLGTVGLAVAEGAKTAG-ASRIIGIDIDSKKYETAKKFGVN-----------EFVNPKDHDKPIQEVIVD 258 (378)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHHHT-CSCEEEECSCTTHHHHHHTTTCC-----------EEECGGGCSSCHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHHcCCc-----------EEEccccCchhHHHHHHH
Confidence 67889999999986 888888888874 23899999999998888653211 111111 00000
Q ss_pred CCCCCeeEEEECCCccchhHHHHHhcCCC-cEEEEEe
Q psy10572 120 EREAPYDIIHVSPSYFTIPQKLLDQLVPG-GRMVMPV 155 (204)
Q Consensus 120 ~~~~~~D~v~~~~~~~~~~~~~~~~Lk~g-G~l~~~~ 155 (204)
...+.+|+|+-..+.....+.+.+.|+++ |++++.-
T Consensus 259 ~~~gg~D~vid~~g~~~~~~~~~~~l~~g~G~iv~~G 295 (378)
T 3uko_A 259 LTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVG 295 (378)
T ss_dssp HTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECS
T ss_pred hcCCCCCEEEECCCCHHHHHHHHHHhhccCCEEEEEc
Confidence 11237999999888877889999999997 9988744
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0022 Score=50.87 Aligned_cols=93 Identities=17% Similarity=0.253 Sum_probs=65.4
Q ss_pred CC-CCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe-c--CCCCCCCC
Q psy10572 48 IK-PGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW-N--GKHGYERE 122 (204)
Q Consensus 48 ~~-~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-d--~~~~~~~~ 122 (204)
+. ++.+||-+|+|. |.++..+++..+ +++++++.++..++.+++.+.. .. ++.. + ......
T Consensus 177 ~~~~g~~VlV~GaG~vG~~a~qlak~~G--a~Vi~~~~~~~~~~~~~~~lGa--------~~--vi~~~~~~~~~~~~-- 242 (357)
T 2cf5_A 177 LKQPGLRGGILGLGGVGHMGVKIAKAMG--HHVTVISSSNKKREEALQDLGA--------DD--YVIGSDQAKMSELA-- 242 (357)
T ss_dssp TTSTTCEEEEECCSHHHHHHHHHHHHHT--CEEEEEESSTTHHHHHHTTSCC--------SC--EEETTCHHHHHHST--
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEeCChHHHHHHHHHcCC--------ce--eeccccHHHHHHhc--
Confidence 56 889999999885 788888888764 5899999998887777633221 11 1111 1 000111
Q ss_pred CCeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 123 APYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 123 ~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
+.+|+|+-..+.....+.+.+.|+++|+++..
T Consensus 243 ~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~ 274 (357)
T 2cf5_A 243 DSLDYVIDTVPVHHALEPYLSLLKLDGKLILM 274 (357)
T ss_dssp TTEEEEEECCCSCCCSHHHHTTEEEEEEEEEC
T ss_pred CCCCEEEECCCChHHHHHHHHHhccCCEEEEe
Confidence 36999998887766778899999999999774
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.014 Score=45.56 Aligned_cols=94 Identities=19% Similarity=0.159 Sum_probs=65.8
Q ss_pred CCCCCEEEEEc-CCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCC------CC
Q psy10572 48 IKPGARILDIG-SGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKH------GY 119 (204)
Q Consensus 48 ~~~~~~vLdiG-~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~------~~ 119 (204)
++++.+||-.| +|. |..+..+++..+ +++++++.++..++.+++.-.. .++...-.. ..
T Consensus 138 ~~~g~~VlV~Ga~g~iG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~~~~Ga~-----------~~~~~~~~~~~~~~~~~ 204 (325)
T 3jyn_A 138 VKPGEIILFHAAAGGVGSLACQWAKALG--AKLIGTVSSPEKAAHAKALGAW-----------ETIDYSHEDVAKRVLEL 204 (325)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHHT--CEEEEEESSHHHHHHHHHHTCS-----------EEEETTTSCHHHHHHHH
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHcCCC-----------EEEeCCCccHHHHHHHH
Confidence 57889999998 454 888888888764 5999999999988888753211 111111000 01
Q ss_pred CCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 120 EREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 120 ~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
.....+|+|+.+.+. ...+.+.+.|+++|++++.-
T Consensus 205 ~~~~g~Dvvid~~g~-~~~~~~~~~l~~~G~iv~~g 239 (325)
T 3jyn_A 205 TDGKKCPVVYDGVGQ-DTWLTSLDSVAPRGLVVSFG 239 (325)
T ss_dssp TTTCCEEEEEESSCG-GGHHHHHTTEEEEEEEEECC
T ss_pred hCCCCceEEEECCCh-HHHHHHHHHhcCCCEEEEEe
Confidence 122469999988776 66788999999999998854
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0083 Score=47.77 Aligned_cols=96 Identities=17% Similarity=0.131 Sum_probs=67.6
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEec-----CCCCC--
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWN-----GKHGY-- 119 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d-----~~~~~-- 119 (204)
+.++.+||-+|+|. |.++..+++..+ ..+|+++|.++..++.+++.-.. .++... +.+..
T Consensus 189 ~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~~lGa~-----------~vi~~~~~~~~~~~~i~~ 256 (373)
T 1p0f_A 189 VTPGSTCAVFGLGGVGFSAIVGCKAAG-ASRIIGVGTHKDKFPKAIELGAT-----------ECLNPKDYDKPIYEVICE 256 (373)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGGHHHHHHTTCS-----------EEECGGGCSSCHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHHHcCCc-----------EEEecccccchHHHHHHH
Confidence 67889999999986 888888888763 22799999999988888653211 111111 10000
Q ss_pred CCCCCeeEEEECCCccchhHHHHHhcCCC-cEEEEEe
Q psy10572 120 EREAPYDIIHVSPSYFTIPQKLLDQLVPG-GRMVMPV 155 (204)
Q Consensus 120 ~~~~~~D~v~~~~~~~~~~~~~~~~Lk~g-G~l~~~~ 155 (204)
...+.+|+|+-..+.....+.+.+.|+++ |++++.-
T Consensus 257 ~t~gg~Dvvid~~g~~~~~~~~~~~l~~~~G~iv~~G 293 (373)
T 1p0f_A 257 KTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLG 293 (373)
T ss_dssp HTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECC
T ss_pred HhCCCCCEEEECCCCHHHHHHHHHHHhcCCCEEEEEc
Confidence 01137999998887767789999999999 9987643
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.009 Score=47.30 Aligned_cols=92 Identities=17% Similarity=0.179 Sum_probs=64.2
Q ss_pred CCCC------CEEEEEcCCC-cHHH-HHHH-HHhCCCce-EEEEEcCHH---HHHHHHHHhhhcCccccCccceEEEEec
Q psy10572 48 IKPG------ARILDIGSGS-GYLT-ACLA-YMAGPEGR-VYGVEHVME---LAESSIKNIDKGNSELLDQGRVQFVVWN 114 (204)
Q Consensus 48 ~~~~------~~vLdiG~G~-G~~~-~~l~-~~~~~~~~-v~~vD~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~d 114 (204)
++++ .+||-+|+|. |.++ ..++ +..+ ++ |++++.++. ..+.+++.- ...+ |
T Consensus 164 ~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~G--a~~Vi~~~~~~~~~~~~~~~~~lG------------a~~v--~ 227 (357)
T 2b5w_A 164 ASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKG--YENLYCLGRRDRPDPTIDIIEELD------------ATYV--D 227 (357)
T ss_dssp HTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTTC--CCEEEEEECCCSSCHHHHHHHHTT------------CEEE--E
T ss_pred CCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHcC--CcEEEEEeCCcccHHHHHHHHHcC------------Cccc--C
Confidence 5778 9999999875 7777 7777 7653 45 999999887 778776421 1111 2
Q ss_pred CCCCCCC-----CCCeeEEEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 115 GKHGYER-----EAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 115 ~~~~~~~-----~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
....... .+.+|+|+-........+.+.+.|+++|++++.-
T Consensus 228 ~~~~~~~~i~~~~gg~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~g 273 (357)
T 2b5w_A 228 SRQTPVEDVPDVYEQMDFIYEATGFPKHAIQSVQALAPNGVGALLG 273 (357)
T ss_dssp TTTSCGGGHHHHSCCEEEEEECSCCHHHHHHHHHHEEEEEEEEECC
T ss_pred CCccCHHHHHHhCCCCCEEEECCCChHHHHHHHHHHhcCCEEEEEe
Confidence 1111000 1369999988777667889999999999988753
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0024 Score=50.46 Aligned_cols=74 Identities=20% Similarity=0.174 Sum_probs=53.7
Q ss_pred CCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCC---CCCCeeE
Q psy10572 51 GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE---REAPYDI 127 (204)
Q Consensus 51 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~D~ 127 (204)
..+++|+.||.|.++.-+......-..+.++|+++.+++..+.+... ..++.+|+..... +...+|+
T Consensus 2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~----------~~~~~~Di~~~~~~~~~~~~~D~ 71 (343)
T 1g55_A 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPH----------TQLLAKTIEGITLEEFDRLSFDM 71 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT----------SCEECSCGGGCCHHHHHHHCCSE
T ss_pred CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccc----------cccccCCHHHccHhHcCcCCcCE
Confidence 35899999999999998887641112689999999999999888632 3456777654321 1125899
Q ss_pred EEECCCc
Q psy10572 128 IHVSPSY 134 (204)
Q Consensus 128 v~~~~~~ 134 (204)
++.++++
T Consensus 72 l~~gpPC 78 (343)
T 1g55_A 72 ILMSPPC 78 (343)
T ss_dssp EEECCC-
T ss_pred EEEcCCC
Confidence 9999885
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0072 Score=47.27 Aligned_cols=59 Identities=15% Similarity=0.245 Sum_probs=47.0
Q ss_pred ChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCH---HHHHHHHHHhhh
Q psy10572 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVM---ELAESSIKNIDK 97 (204)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~---~~~~~a~~~~~~ 97 (204)
+..+...++... ..++..|||..||+|..+..+.+... +.+|+|+++ ..++.+++++..
T Consensus 228 p~~l~~~~i~~~---~~~~~~vlDpF~GsGtt~~aa~~~~r---~~ig~e~~~~~~~~~~~~~~Rl~~ 289 (319)
T 1eg2_A 228 PAAVIERLVRAL---SHPGSTVLDFFAGSGVTARVAIQEGR---NSICTDAAPVFKEYYQKQLTFLQD 289 (319)
T ss_dssp CHHHHHHHHHHH---SCTTCEEEETTCTTCHHHHHHHHHTC---EEEEEESSTHHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHh---CCCCCEEEecCCCCCHHHHHHHHcCC---cEEEEECCccHHHHHHHHHHHHHH
Confidence 344555555544 47899999999999999998888764 999999999 999999988754
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.00076 Score=65.88 Aligned_cols=99 Identities=12% Similarity=0.196 Sum_probs=54.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCC----CceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC-CCCCC
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGP----EGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG-YEREA 123 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~----~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~ 123 (204)
.+..+|||||.|+|..+..+...+.. ..+++..|+|+...+.++++++.. .+.....|.... .+...
T Consensus 1239 ~~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~--------di~~~~~d~~~~~~~~~~ 1310 (2512)
T 2vz8_A 1239 SPKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQL--------HVTQGQWDPANPAPGSLG 1310 (2512)
T ss_dssp SSEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHH--------TEEEECCCSSCCCC----
T ss_pred CCCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhc--------ccccccccccccccCCCC
Confidence 45679999999999887777666532 237888999998888887776541 122211122111 11345
Q ss_pred CeeEEEECCCccc------hhHHHHHhcCCCcEEEEEe
Q psy10572 124 PYDIIHVSPSYFT------IPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 124 ~~D~v~~~~~~~~------~~~~~~~~Lk~gG~l~~~~ 155 (204)
.||+|++...++. .+.++.++|||||.+++..
T Consensus 1311 ~ydlvia~~vl~~t~~~~~~l~~~~~lL~p~G~l~~~e 1348 (2512)
T 2vz8_A 1311 KADLLVCNCALATLGDPAVAVGNMAATLKEGGFLLLHT 1348 (2512)
T ss_dssp -CCEEEEECC--------------------CCEEEEEE
T ss_pred ceeEEEEcccccccccHHHHHHHHHHhcCCCcEEEEEe
Confidence 7999998776642 4578889999999998854
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0041 Score=49.48 Aligned_cols=94 Identities=21% Similarity=0.248 Sum_probs=64.8
Q ss_pred CC-CCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEec---CCCCCCCC
Q psy10572 48 IK-PGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWN---GKHGYERE 122 (204)
Q Consensus 48 ~~-~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d---~~~~~~~~ 122 (204)
+. ++.+||-+|+|. |..+..+++..+ ++|++++.++..++.+.+.+.. . .++... ......
T Consensus 184 ~~~~g~~VlV~GaG~vG~~~~q~a~~~G--a~Vi~~~~~~~~~~~~~~~lGa--------~--~v~~~~~~~~~~~~~-- 249 (366)
T 1yqd_A 184 LDEPGKHIGIVGLGGLGHVAVKFAKAFG--SKVTVISTSPSKKEEALKNFGA--------D--SFLVSRDQEQMQAAA-- 249 (366)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCGGGHHHHHHTSCC--------S--EEEETTCHHHHHHTT--
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHhcCC--------c--eEEeccCHHHHHHhh--
Confidence 55 889999999875 777778887753 5899999998887776533211 1 111111 001111
Q ss_pred CCeeEEEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 123 APYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 123 ~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
+.+|+|+...+.....+.+.+.|+++|+++..-
T Consensus 250 ~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g 282 (366)
T 1yqd_A 250 GTLDGIIDTVSAVHPLLPLFGLLKSHGKLILVG 282 (366)
T ss_dssp TCEEEEEECCSSCCCSHHHHHHEEEEEEEEECC
T ss_pred CCCCEEEECCCcHHHHHHHHHHHhcCCEEEEEc
Confidence 369999988877666788899999999987743
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.012 Score=46.75 Aligned_cols=96 Identities=16% Similarity=0.137 Sum_probs=67.3
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe-c----CCCCC--
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW-N----GKHGY-- 119 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-d----~~~~~-- 119 (204)
+.++.+||-+|+|. |.++..+++..+ ..+|+++|.++..++.+++.-.. .++.. + ..+..
T Consensus 188 ~~~g~~VlV~GaG~vG~~avqla~~~G-a~~Vi~~~~~~~~~~~~~~lGa~-----------~vi~~~~~~~~~~~~v~~ 255 (373)
T 2fzw_A 188 LEPGSVCAVFGLGGVGLAVIMGCKVAG-ASRIIGVDINKDKFARAKEFGAT-----------ECINPQDFSKPIQEVLIE 255 (373)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGGHHHHHHHTCS-----------EEECGGGCSSCHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHHcCCc-----------eEeccccccccHHHHHHH
Confidence 67889999999886 788888888763 22799999999988888753211 11111 1 00000
Q ss_pred CCCCCeeEEEECCCccchhHHHHHhcCCC-cEEEEEe
Q psy10572 120 EREAPYDIIHVSPSYFTIPQKLLDQLVPG-GRMVMPV 155 (204)
Q Consensus 120 ~~~~~~D~v~~~~~~~~~~~~~~~~Lk~g-G~l~~~~ 155 (204)
...+.+|+|+...+.....+.+.+.|+++ |++++.-
T Consensus 256 ~~~~g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~G 292 (373)
T 2fzw_A 256 MTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVG 292 (373)
T ss_dssp HTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECS
T ss_pred HhCCCCCEEEECCCcHHHHHHHHHhhccCCcEEEEEe
Confidence 01136999998887767789999999999 9988743
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.017 Score=45.22 Aligned_cols=93 Identities=17% Similarity=0.117 Sum_probs=64.4
Q ss_pred CCCCCEEEEEc-CCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCC------CC
Q psy10572 48 IKPGARILDIG-SGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKH------GY 119 (204)
Q Consensus 48 ~~~~~~vLdiG-~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~------~~ 119 (204)
+.++.+||-.| +|. |..+..+++..+ +++++++.++..++.+++.-. . .++..+-.. ..
T Consensus 146 ~~~g~~vlV~Ga~g~iG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~~~~ga---------~--~~~~~~~~~~~~~~~~~ 212 (334)
T 3qwb_A 146 VKKGDYVLLFAAAGGVGLILNQLLKMKG--AHTIAVASTDEKLKIAKEYGA---------E--YLINASKEDILRQVLKF 212 (334)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHTTC---------S--EEEETTTSCHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHcCC---------c--EEEeCCCchHHHHHHHH
Confidence 57889999999 443 777888888753 599999999988887765311 1 111111010 01
Q ss_pred CCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 120 EREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 120 ~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
.....+|+|+.+.+. ...+.+.+.|+++|++++.
T Consensus 213 ~~~~g~D~vid~~g~-~~~~~~~~~l~~~G~iv~~ 246 (334)
T 3qwb_A 213 TNGKGVDASFDSVGK-DTFEISLAALKRKGVFVSF 246 (334)
T ss_dssp TTTSCEEEEEECCGG-GGHHHHHHHEEEEEEEEEC
T ss_pred hCCCCceEEEECCCh-HHHHHHHHHhccCCEEEEE
Confidence 123469999988775 6778899999999999874
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0081 Score=46.56 Aligned_cols=105 Identities=14% Similarity=0.141 Sum_probs=59.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHH---HHhCCCc--eEEEEEcCHH---------HHHHHHHHhhhcCccccCcc--ceEEEE
Q psy10572 49 KPGARILDIGSGSGYLTACLA---YMAGPEG--RVYGVEHVME---------LAESSIKNIDKGNSELLDQG--RVQFVV 112 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~---~~~~~~~--~v~~vD~~~~---------~~~~a~~~~~~~~~~~~~~~--~~~~~~ 112 (204)
.+.-+|+|+|-|+|.-..... ...++.. +++.+|..+- ..+.......... +.... ..++..
T Consensus 95 ~~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p--~~~~~~v~L~l~~ 172 (308)
T 3vyw_A 95 RKVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVP--EYEGERLSLKVLL 172 (308)
T ss_dssp CSEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCS--EEECSSEEEEEEE
T ss_pred CCCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCc--cccCCcEEEEEEe
Confidence 344689999999998543332 2233444 4567775321 1111221111110 01112 345677
Q ss_pred ecCCCCC--CCCCCeeEEEECCCcc---------chhHHHHHhcCCCcEEEEEe
Q psy10572 113 WNGKHGY--EREAPYDIIHVSPSYF---------TIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 113 ~d~~~~~--~~~~~~D~v~~~~~~~---------~~~~~~~~~Lk~gG~l~~~~ 155 (204)
+|+.+.. .+...+|+|+.++-.+ .+++.+.++++|||++.--+
T Consensus 173 GDa~~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laTYt 226 (308)
T 3vyw_A 173 GDARKRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVSYS 226 (308)
T ss_dssp SCHHHHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEESC
T ss_pred chHHHHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEEEe
Confidence 8865432 2335799999986432 26689999999999987533
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.009 Score=47.62 Aligned_cols=95 Identities=15% Similarity=0.075 Sum_probs=66.5
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEec-----CCCCC--
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWN-----GKHGY-- 119 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d-----~~~~~-- 119 (204)
+.++.+||-+|+|. |.++..+++..+ ..+|+++|.++..++.+++.-.. .++... +.+..
T Consensus 193 ~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~~lGa~-----------~vi~~~~~~~~~~~~v~~ 260 (376)
T 1e3i_A 193 VTPGSTCAVFGLGCVGLSAIIGCKIAG-ASRIIAIDINGEKFPKAKALGAT-----------DCLNPRELDKPVQDVITE 260 (376)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHHTTCS-----------EEECGGGCSSCHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHHhCCc-----------EEEccccccchHHHHHHH
Confidence 57889999999886 888888888763 22799999999988888653211 111111 00000
Q ss_pred CCCCCeeEEEECCCccchhHHHHHhcCCC-cEEEEE
Q psy10572 120 EREAPYDIIHVSPSYFTIPQKLLDQLVPG-GRMVMP 154 (204)
Q Consensus 120 ~~~~~~D~v~~~~~~~~~~~~~~~~Lk~g-G~l~~~ 154 (204)
...+.+|+|+-........+.+.+.|+++ |++++.
T Consensus 261 ~~~~g~Dvvid~~G~~~~~~~~~~~l~~~~G~iv~~ 296 (376)
T 1e3i_A 261 LTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVV 296 (376)
T ss_dssp HHTSCBSEEEESSCCHHHHHHHHHTBCTTTCEEEEC
T ss_pred HhCCCccEEEECCCCHHHHHHHHHHhhcCCCEEEEE
Confidence 00136999998887767789999999999 998764
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.53 E-value=0.01 Score=47.19 Aligned_cols=95 Identities=19% Similarity=0.168 Sum_probs=66.5
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEec-----CCCCC--
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWN-----GKHGY-- 119 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d-----~~~~~-- 119 (204)
+.++.+||-+|+|. |.++..+++..+ ..+|+++|.++..++.+++.-. . .++... ..+..
T Consensus 190 ~~~g~~VlV~GaG~vG~~a~qla~~~G-a~~Vi~~~~~~~~~~~~~~lGa---------~--~vi~~~~~~~~~~~~~~~ 257 (374)
T 1cdo_A 190 VEPGSTCAVFGLGAVGLAAVMGCHSAG-AKRIIAVDLNPDKFEKAKVFGA---------T--DFVNPNDHSEPISQVLSK 257 (374)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHHTTC---------C--EEECGGGCSSCHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHhCC---------c--eEEeccccchhHHHHHHH
Confidence 67889999999876 788888888763 2279999999998888865311 1 111111 00000
Q ss_pred CCCCCeeEEEECCCccchhHHHHHhcCCC-cEEEEE
Q psy10572 120 EREAPYDIIHVSPSYFTIPQKLLDQLVPG-GRMVMP 154 (204)
Q Consensus 120 ~~~~~~D~v~~~~~~~~~~~~~~~~Lk~g-G~l~~~ 154 (204)
...+.+|+|+...+.....+.+.+.|+++ |++++.
T Consensus 258 ~~~~g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~ 293 (374)
T 1cdo_A 258 MTNGGVDFSLECVGNVGVMRNALESCLKGWGVSVLV 293 (374)
T ss_dssp HHTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEEC
T ss_pred HhCCCCCEEEECCCCHHHHHHHHHHhhcCCcEEEEE
Confidence 00136999998887777789999999999 998774
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=96.47 E-value=0.017 Score=41.55 Aligned_cols=92 Identities=21% Similarity=0.232 Sum_probs=60.6
Q ss_pred CCCCCEEEEEcCC--CcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC-------
Q psy10572 48 IKPGARILDIGSG--SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG------- 118 (204)
Q Consensus 48 ~~~~~~vLdiG~G--~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~------- 118 (204)
+.++.+||..|++ .|.....+++..+ ++|+++|.++...+.+++. + .. . ++ |....
T Consensus 36 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~G--~~V~~~~~~~~~~~~~~~~----g-----~~-~-~~--d~~~~~~~~~~~ 100 (198)
T 1pqw_A 36 LSPGERVLIHSATGGVGMAAVSIAKMIG--ARIYTTAGSDAKREMLSRL----G-----VE-Y-VG--DSRSVDFADEIL 100 (198)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHHT--CEEEEEESSHHHHHHHHTT----C-----CS-E-EE--ETTCSTHHHHHH
T ss_pred CCCCCEEEEeeCCChHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHc----C-----CC-E-Ee--eCCcHHHHHHHH
Confidence 6788999999953 3666666666543 5899999998877666431 1 11 1 11 21110
Q ss_pred -CCCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 119 -YEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 119 -~~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
......+|+++.+.. ....+.+.+.|+++|++++.-
T Consensus 101 ~~~~~~~~D~vi~~~g-~~~~~~~~~~l~~~G~~v~~g 137 (198)
T 1pqw_A 101 ELTDGYGVDVVLNSLA-GEAIQRGVQILAPGGRFIELG 137 (198)
T ss_dssp HHTTTCCEEEEEECCC-THHHHHHHHTEEEEEEEEECS
T ss_pred HHhCCCCCeEEEECCc-hHHHHHHHHHhccCCEEEEEc
Confidence 011246999998875 456788999999999988743
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=96.44 E-value=0.015 Score=46.36 Aligned_cols=95 Identities=15% Similarity=0.063 Sum_probs=66.4
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEec-----CCCCC--
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWN-----GKHGY-- 119 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d-----~~~~~-- 119 (204)
+.++.+||-+|+|. |.++..+++..+ ..+|+++|.++..++.+++.-.. .++... ..+..
T Consensus 189 ~~~g~~VlV~GaG~vG~~a~qla~~~G-a~~Vi~~~~~~~~~~~~~~lGa~-----------~vi~~~~~~~~~~~~~~~ 256 (374)
T 2jhf_A 189 VTQGSTCAVFGLGGVGLSVIMGCKAAG-AARIIGVDINKDKFAKAKEVGAT-----------ECVNPQDYKKPIQEVLTE 256 (374)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHHTTCS-----------EEECGGGCSSCHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHHhCCc-----------eEecccccchhHHHHHHH
Confidence 67889999999886 778888888763 22799999999988888643211 111111 00000
Q ss_pred CCCCCeeEEEECCCccchhHHHHHhcCCC-cEEEEE
Q psy10572 120 EREAPYDIIHVSPSYFTIPQKLLDQLVPG-GRMVMP 154 (204)
Q Consensus 120 ~~~~~~D~v~~~~~~~~~~~~~~~~Lk~g-G~l~~~ 154 (204)
...+.+|+|+...+.....+.+.+.|+++ |++++.
T Consensus 257 ~~~~g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~ 292 (374)
T 2jhf_A 257 MSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIV 292 (374)
T ss_dssp HTTSCBSEEEECSCCHHHHHHHHHHBCTTTCEEEEC
T ss_pred HhCCCCcEEEECCCCHHHHHHHHHHhhcCCcEEEEe
Confidence 01136999998887767788999999999 998764
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.039 Score=44.39 Aligned_cols=96 Identities=13% Similarity=0.114 Sum_probs=65.1
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe---cCCC---CCC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW---NGKH---GYE 120 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---d~~~---~~~ 120 (204)
+.++.+||-+|+|. |.++..+++..+ ..+|+++|.++..++.+++.-.. .++.. +..+ ...
T Consensus 211 ~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~~~~lGa~-----------~vi~~~~~~~~~~i~~~t 278 (404)
T 3ip1_A 211 IRPGDNVVILGGGPIGLAAVAILKHAG-ASKVILSEPSEVRRNLAKELGAD-----------HVIDPTKENFVEAVLDYT 278 (404)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHTCS-----------EEECTTTSCHHHHHHHHT
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHcCCC-----------EEEcCCCCCHHHHHHHHh
Confidence 67889999999986 888888888763 23899999999999888764221 11111 1000 011
Q ss_pred CCCCeeEEEECCCcc-chhHHHHHhc----CCCcEEEEEe
Q psy10572 121 REAPYDIIHVSPSYF-TIPQKLLDQL----VPGGRMVMPV 155 (204)
Q Consensus 121 ~~~~~D~v~~~~~~~-~~~~~~~~~L----k~gG~l~~~~ 155 (204)
....+|+|+-..+.. .....+.+.| +++|++++.-
T Consensus 279 ~g~g~D~vid~~g~~~~~~~~~~~~l~~~~~~~G~iv~~G 318 (404)
T 3ip1_A 279 NGLGAKLFLEATGVPQLVWPQIEEVIWRARGINATVAIVA 318 (404)
T ss_dssp TTCCCSEEEECSSCHHHHHHHHHHHHHHCSCCCCEEEECS
T ss_pred CCCCCCEEEECCCCcHHHHHHHHHHHHhccCCCcEEEEeC
Confidence 234699999877765 3555666666 9999998743
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.033 Score=43.68 Aligned_cols=92 Identities=16% Similarity=0.186 Sum_probs=65.7
Q ss_pred CCCCCEEEEEcC--CCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC-------
Q psy10572 48 IKPGARILDIGS--GSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG------- 118 (204)
Q Consensus 48 ~~~~~~vLdiG~--G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~------- 118 (204)
+.++.+||-.|+ |.|..+..+++..+ +++++++.++..++.++..- . . .++ |....
T Consensus 164 ~~~g~~vlV~Gasg~iG~~~~~~a~~~G--~~Vi~~~~~~~~~~~~~~~g-a--------~--~~~--d~~~~~~~~~~~ 228 (343)
T 2eih_A 164 VRPGDDVLVMAAGSGVSVAAIQIAKLFG--ARVIATAGSEDKLRRAKALG-A--------D--ETV--NYTHPDWPKEVR 228 (343)
T ss_dssp CCTTCEEEECSTTSTTHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHHT-C--------S--EEE--ETTSTTHHHHHH
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHhcC-C--------C--EEE--cCCcccHHHHHH
Confidence 578899999998 35888888888753 59999999999888876421 1 1 111 11110
Q ss_pred -CCCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 119 -YEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 119 -~~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
......+|+|+.+.. ....+.+.+.|+++|++++.-
T Consensus 229 ~~~~~~~~d~vi~~~g-~~~~~~~~~~l~~~G~~v~~g 265 (343)
T 2eih_A 229 RLTGGKGADKVVDHTG-ALYFEGVIKATANGGRIAIAG 265 (343)
T ss_dssp HHTTTTCEEEEEESSC-SSSHHHHHHHEEEEEEEEESS
T ss_pred HHhCCCCceEEEECCC-HHHHHHHHHhhccCCEEEEEe
Confidence 012246999999888 677899999999999987743
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.02 Score=45.48 Aligned_cols=91 Identities=15% Similarity=0.107 Sum_probs=62.1
Q ss_pred CCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCH---HHHHHHHHHhhhcCccccCccceEEEEe-cCCCCCC-CCCC
Q psy10572 51 GARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVM---ELAESSIKNIDKGNSELLDQGRVQFVVW-NGKHGYE-REAP 124 (204)
Q Consensus 51 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~-~~~~ 124 (204)
+.+||-+|+|. |..+..+++..+ ++|++++.++ ...+.+++.- ...+.. +..+... ....
T Consensus 181 g~~VlV~GaG~vG~~~~q~a~~~G--a~Vi~~~~~~~~~~~~~~~~~~g------------a~~v~~~~~~~~~~~~~~~ 246 (366)
T 2cdc_A 181 CRKVLVVGTGPIGVLFTLLFRTYG--LEVWMANRREPTEVEQTVIEETK------------TNYYNSSNGYDKLKDSVGK 246 (366)
T ss_dssp TCEEEEESCHHHHHHHHHHHHHHT--CEEEEEESSCCCHHHHHHHHHHT------------CEEEECTTCSHHHHHHHCC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC--CEEEEEeCCccchHHHHHHHHhC------------CceechHHHHHHHHHhCCC
Confidence 89999999864 667777777653 4999999987 7667665421 111111 1110000 0146
Q ss_pred eeEEEECCCccchh-HHHHHhcCCCcEEEEEe
Q psy10572 125 YDIIHVSPSYFTIP-QKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 125 ~D~v~~~~~~~~~~-~~~~~~Lk~gG~l~~~~ 155 (204)
+|+|+.+.+..... +.+.+.|+++|++++.-
T Consensus 247 ~d~vid~~g~~~~~~~~~~~~l~~~G~iv~~g 278 (366)
T 2cdc_A 247 FDVIIDATGADVNILGNVIPLLGRNGVLGLFG 278 (366)
T ss_dssp EEEEEECCCCCTHHHHHHGGGEEEEEEEEECS
T ss_pred CCEEEECCCChHHHHHHHHHHHhcCCEEEEEe
Confidence 99999998887777 99999999999987743
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.016 Score=45.62 Aligned_cols=96 Identities=16% Similarity=0.154 Sum_probs=64.9
Q ss_pred CCCCCEEEEEcCCC--cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCC-----CCCC
Q psy10572 48 IKPGARILDIGSGS--GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGK-----HGYE 120 (204)
Q Consensus 48 ~~~~~~vLdiG~G~--G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~-----~~~~ 120 (204)
+.++.+||-.|+|. |..+..+++.. .+++|+++|.++..++.+++.- . . ..+...+.. ....
T Consensus 168 ~~~g~~vlV~Gagg~iG~~~~~~a~~~-~Ga~Vi~~~~~~~~~~~~~~~g-~--------~-~~~~~~~~~~~~~~~~~~ 236 (347)
T 1jvb_A 168 LDPTKTLLVVGAGGGLGTMAVQIAKAV-SGATIIGVDVREEAVEAAKRAG-A--------D-YVINASMQDPLAEIRRIT 236 (347)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHH-TCCEEEEEESSHHHHHHHHHHT-C--------S-EEEETTTSCHHHHHHHHT
T ss_pred CCCCCEEEEECCCccHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHhC-C--------C-EEecCCCccHHHHHHHHh
Confidence 67889999999984 56666777765 1358999999998888775431 1 1 111111100 0001
Q ss_pred CCCCeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 121 REAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 121 ~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
..+.+|+++.+.......+.+.+.|+++|++++.
T Consensus 237 ~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~iv~~ 270 (347)
T 1jvb_A 237 ESKGVDAVIDLNNSEKTLSVYPKALAKQGKYVMV 270 (347)
T ss_dssp TTSCEEEEEESCCCHHHHTTGGGGEEEEEEEEEC
T ss_pred cCCCceEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence 1147999999888776778889999999998774
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.025 Score=44.55 Aligned_cols=94 Identities=19% Similarity=0.133 Sum_probs=65.6
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCc-eEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe---cCCC---CC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEG-RVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW---NGKH---GY 119 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---d~~~---~~ 119 (204)
+ ++.+||-+|+|. |..+..+++..+ + +|++++.++..++.+++.-.. .++.. +..+ ..
T Consensus 166 ~-~g~~VlV~GaG~vG~~~~q~a~~~G--a~~Vi~~~~~~~~~~~~~~~Ga~-----------~~~~~~~~~~~~~v~~~ 231 (348)
T 2d8a_A 166 I-SGKSVLITGAGPLGLLGIAVAKASG--AYPVIVSEPSDFRRELAKKVGAD-----------YVINPFEEDVVKEVMDI 231 (348)
T ss_dssp C-TTCCEEEECCSHHHHHHHHHHHHTT--CCSEEEECSCHHHHHHHHHHTCS-----------EEECTTTSCHHHHHHHH
T ss_pred C-CCCEEEEECCCHHHHHHHHHHHHcC--CCEEEEECCCHHHHHHHHHhCCC-----------EEECCCCcCHHHHHHHH
Confidence 5 888999999975 777888888753 4 899999999888887643211 11111 1000 00
Q ss_pred CCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 120 EREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 120 ~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
.....+|+|+...+.....+.+.+.|+++|+++..-
T Consensus 232 ~~g~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g 267 (348)
T 2d8a_A 232 TDGNGVDVFLEFSGAPKALEQGLQAVTPAGRVSLLG 267 (348)
T ss_dssp TTTSCEEEEEECSCCHHHHHHHHHHEEEEEEEEECC
T ss_pred cCCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEc
Confidence 122369999988887677889999999999987743
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.018 Score=45.24 Aligned_cols=94 Identities=17% Similarity=0.023 Sum_probs=64.2
Q ss_pred CCCCCEEEEEcCCC--cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEec---CCC---CC
Q psy10572 48 IKPGARILDIGSGS--GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWN---GKH---GY 119 (204)
Q Consensus 48 ~~~~~~vLdiG~G~--G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d---~~~---~~ 119 (204)
++++.+||-+|+|. |..+..+++..+ ++|++++.++..++.+++.-.. .++... ..+ ..
T Consensus 142 ~~~g~~VlV~Ga~g~iG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~~~lga~-----------~~~~~~~~~~~~~~~~~ 208 (340)
T 3gms_A 142 LQRNDVLLVNACGSAIGHLFAQLSQILN--FRLIAVTRNNKHTEELLRLGAA-----------YVIDTSTAPLYETVMEL 208 (340)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHHT--CEEEEEESSSTTHHHHHHHTCS-----------EEEETTTSCHHHHHHHH
T ss_pred cCCCCEEEEeCCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHhCCCc-----------EEEeCCcccHHHHHHHH
Confidence 67889999999984 777888888764 5999999999888888763211 111111 000 01
Q ss_pred CCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 120 EREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 120 ~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
.....+|+|+.+.+.....+ ..+.|+++|++++.-
T Consensus 209 ~~~~g~Dvvid~~g~~~~~~-~~~~l~~~G~iv~~G 243 (340)
T 3gms_A 209 TNGIGADAAIDSIGGPDGNE-LAFSLRPNGHFLTIG 243 (340)
T ss_dssp TTTSCEEEEEESSCHHHHHH-HHHTEEEEEEEEECC
T ss_pred hCCCCCcEEEECCCChhHHH-HHHHhcCCCEEEEEe
Confidence 12247999998877665544 458999999998753
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0026 Score=49.13 Aligned_cols=89 Identities=19% Similarity=0.193 Sum_probs=62.7
Q ss_pred CCCCCEEEEEcC-C-CcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEE----ecCCCCCCC
Q psy10572 48 IKPGARILDIGS-G-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVV----WNGKHGYER 121 (204)
Q Consensus 48 ~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----~d~~~~~~~ 121 (204)
++++.+||-.|+ | .|..+..+++..+ +++++++.++..++.+++.- .. .++. .+..+..
T Consensus 123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~~~~g---------a~--~~~~~~~~~~~~~~~-- 187 (302)
T 1iz0_A 123 ARPGEKVLVQAAAGALGTAAVQVARAMG--LRVLAAASRPEKLALPLALG---------AE--EAATYAEVPERAKAW-- 187 (302)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHTT--CEEEEEESSGGGSHHHHHTT---------CS--EEEEGGGHHHHHHHT--
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHhcC---------CC--EEEECCcchhHHHHh--
Confidence 678899999998 4 3778888888753 59999999988887775421 11 1111 1111111
Q ss_pred CCCeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 122 EAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 122 ~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
..+|+|+. .+. ...+.+.+.|+++|+++..
T Consensus 188 -~~~d~vid-~g~-~~~~~~~~~l~~~G~~v~~ 217 (302)
T 1iz0_A 188 -GGLDLVLE-VRG-KEVEESLGLLAHGGRLVYI 217 (302)
T ss_dssp -TSEEEEEE-CSC-TTHHHHHTTEEEEEEEEEC
T ss_pred -cCceEEEE-CCH-HHHHHHHHhhccCCEEEEE
Confidence 46999998 665 6778999999999998764
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=96.19 E-value=0.014 Score=45.82 Aligned_cols=71 Identities=20% Similarity=0.105 Sum_probs=51.2
Q ss_pred CCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCC-CCCeeEEE
Q psy10572 51 GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYER-EAPYDIIH 129 (204)
Q Consensus 51 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~v~ 129 (204)
+.+++|+.||.|.++.-+..... -.+.++|+++.+++..+.+.... . .+|+...... -..+|+|+
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~aG~--~~v~~~e~d~~a~~t~~~N~~~~---------~---~~Di~~~~~~~~~~~D~l~ 76 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESCGA--ECVYSNEWDKYAQEVYEMNFGEK---------P---EGDITQVNEKTIPDHDILC 76 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHTTC--EEEEEECCCHHHHHHHHHHHSCC---------C---BSCGGGSCGGGSCCCSEEE
T ss_pred CCcEEEECCCcCHHHHHHHHCCC--eEEEEEeCCHHHHHHHHHHcCCC---------C---cCCHHHcCHhhCCCCCEEE
Confidence 46999999999999998887642 26888999999999988886431 1 4555433211 13589999
Q ss_pred ECCCcc
Q psy10572 130 VSPSYF 135 (204)
Q Consensus 130 ~~~~~~ 135 (204)
.++++.
T Consensus 77 ~gpPCQ 82 (327)
T 2c7p_A 77 AGFPCQ 82 (327)
T ss_dssp EECCCT
T ss_pred ECCCCC
Confidence 987763
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.023 Score=44.72 Aligned_cols=92 Identities=17% Similarity=0.152 Sum_probs=64.6
Q ss_pred CCCEEEEE-cCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe--cCCCCC--CCCC
Q psy10572 50 PGARILDI-GSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW--NGKHGY--EREA 123 (204)
Q Consensus 50 ~~~~vLdi-G~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--d~~~~~--~~~~ 123 (204)
++.+||-. |+|. |..+..+++..+ ++|++++.++..++.+++.-.. .++.. +..+.. ....
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~~lGa~-----------~vi~~~~~~~~~~~~~~~~ 216 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYG--LRVITTASRNETIEWTKKMGAD-----------IVLNHKESLLNQFKTQGIE 216 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT--CEEEEECCSHHHHHHHHHHTCS-----------EEECTTSCHHHHHHHHTCC
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHhcCCc-----------EEEECCccHHHHHHHhCCC
Confidence 78899998 5665 888888888753 5999999999988888763211 11111 100000 1224
Q ss_pred CeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 124 PYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 124 ~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
.+|+|+.........+.+.++|+++|+++..
T Consensus 217 g~Dvv~d~~g~~~~~~~~~~~l~~~G~iv~~ 247 (346)
T 3fbg_A 217 LVDYVFCTFNTDMYYDDMIQLVKPRGHIATI 247 (346)
T ss_dssp CEEEEEESSCHHHHHHHHHHHEEEEEEEEES
T ss_pred CccEEEECCCchHHHHHHHHHhccCCEEEEE
Confidence 6999998887777778999999999999764
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0071 Score=47.12 Aligned_cols=90 Identities=13% Similarity=-0.043 Sum_probs=61.7
Q ss_pred EEEEEcC-CC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCC-CCCCCCCeeEEE
Q psy10572 53 RILDIGS-GS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKH-GYEREAPYDIIH 129 (204)
Q Consensus 53 ~vLdiG~-G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~ 129 (204)
+||-.|+ |. |.++..+++..+ ++|++++.++...+.+++.-.. ..+-..+... .....+.+|+++
T Consensus 149 ~VlV~Ga~G~vG~~aiqla~~~G--a~Vi~~~~~~~~~~~~~~lGa~----------~vi~~~~~~~~~~~~~~~~d~v~ 216 (324)
T 3nx4_A 149 EVVVTGASGGVGSTAVALLHKLG--YQVAAVSGRESTHGYLKSLGAN----------RILSRDEFAESRPLEKQLWAGAI 216 (324)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTT--CCEEEEESCGGGHHHHHHHTCS----------EEEEGGGSSCCCSSCCCCEEEEE
T ss_pred eEEEECCCcHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHhcCCC----------EEEecCCHHHHHhhcCCCccEEE
Confidence 4999997 54 888888998864 5999999999988888763211 1111111111 111235799998
Q ss_pred ECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 130 VSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 130 ~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
-..... ..+.+.+.|+++|+++..-
T Consensus 217 d~~g~~-~~~~~~~~l~~~G~iv~~G 241 (324)
T 3nx4_A 217 DTVGDK-VLAKVLAQMNYGGCVAACG 241 (324)
T ss_dssp ESSCHH-HHHHHHHTEEEEEEEEECC
T ss_pred ECCCcH-HHHHHHHHHhcCCEEEEEe
Confidence 776654 7789999999999998753
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=96.08 E-value=0.039 Score=45.16 Aligned_cols=93 Identities=18% Similarity=0.156 Sum_probs=65.3
Q ss_pred CCCCCEEEEEcC-CC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCC--------
Q psy10572 48 IKPGARILDIGS-GS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKH-------- 117 (204)
Q Consensus 48 ~~~~~~vLdiG~-G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~-------- 117 (204)
++++.+||-+|+ |. |.++..+++..+ +++++++.++..++.+++.-.. .++...-..
T Consensus 226 ~~~g~~VlV~GasG~vG~~avqlak~~G--a~vi~~~~~~~~~~~~~~lGa~-----------~vi~~~~~d~~~~~~~~ 292 (456)
T 3krt_A 226 MKQGDNVLIWGASGGLGSYATQFALAGG--ANPICVVSSPQKAEICRAMGAE-----------AIIDRNAEGYRFWKDEN 292 (456)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHHTCC-----------EEEETTTTTCCSEEETT
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHcC--CeEEEEECCHHHHHHHHhhCCc-----------EEEecCcCccccccccc
Confidence 678899999998 54 888888888753 5899999999988888653211 111110000
Q ss_pred ---------------CCCCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 118 ---------------GYEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 118 ---------------~~~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
.......+|+|+-..+. .....+.++|+++|++++.
T Consensus 293 ~~~~~~~~~~~~~i~~~t~g~g~Dvvid~~G~-~~~~~~~~~l~~~G~iv~~ 343 (456)
T 3krt_A 293 TQDPKEWKRFGKRIRELTGGEDIDIVFEHPGR-ETFGASVFVTRKGGTITTC 343 (456)
T ss_dssp EECHHHHHHHHHHHHHHHTSCCEEEEEECSCH-HHHHHHHHHEEEEEEEEES
T ss_pred ccchHHHHHHHHHHHHHhCCCCCcEEEEcCCc-hhHHHHHHHhhCCcEEEEE
Confidence 00122479999987776 6778899999999999874
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.02 Score=44.91 Aligned_cols=94 Identities=18% Similarity=0.098 Sum_probs=63.5
Q ss_pred CCCCCEEEEEcC-C-CcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEE-e---cCCCCC--
Q psy10572 48 IKPGARILDIGS-G-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVV-W---NGKHGY-- 119 (204)
Q Consensus 48 ~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~---d~~~~~-- 119 (204)
+.++.+||-.|+ | .|..+..+++..+ +++++++.++..++.+++.+.. . .++. . +.....
T Consensus 153 ~~~g~~vlI~Ga~g~iG~~~~~~a~~~G--~~V~~~~~~~~~~~~~~~~~g~--------~--~~~d~~~~~~~~~~~~~ 220 (345)
T 2j3h_A 153 PKEGETVYVSAASGAVGQLVGQLAKMMG--CYVVGSAGSKEKVDLLKTKFGF--------D--DAFNYKEESDLTAALKR 220 (345)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHTSCC--------S--EEEETTSCSCSHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHcCC--------c--eEEecCCHHHHHHHHHH
Confidence 678899999997 4 4777777777653 5899999999888877633211 1 1111 1 110000
Q ss_pred CCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 120 EREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 120 ~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
.....+|+++.+... ...+.+.+.|+++|++++.
T Consensus 221 ~~~~~~d~vi~~~g~-~~~~~~~~~l~~~G~~v~~ 254 (345)
T 2j3h_A 221 CFPNGIDIYFENVGG-KMLDAVLVNMNMHGRIAVC 254 (345)
T ss_dssp HCTTCEEEEEESSCH-HHHHHHHTTEEEEEEEEEC
T ss_pred HhCCCCcEEEECCCH-HHHHHHHHHHhcCCEEEEE
Confidence 011469999988876 5778899999999999874
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.06 E-value=0.044 Score=42.64 Aligned_cols=94 Identities=20% Similarity=0.158 Sum_probs=63.4
Q ss_pred CCCCCEEEEEcC-C-CcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe-c--CCC---CC
Q psy10572 48 IKPGARILDIGS-G-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW-N--GKH---GY 119 (204)
Q Consensus 48 ~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-d--~~~---~~ 119 (204)
+.++.+||-.|+ | .|..+..+++..+ +++++++.++..++.+++.- . . . ++.. + ..+ ..
T Consensus 138 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~G--~~V~~~~~~~~~~~~~~~~g-~--------~-~-~~~~~~~~~~~~~~~~ 204 (327)
T 1qor_A 138 IKPDEQFLFHAAAGGVGLIACQWAKALG--AKLIGTVGTAQKAQSALKAG-A--------W-Q-VINYREEDLVERLKEI 204 (327)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHHT--CEEEEEESSHHHHHHHHHHT-C--------S-E-EEETTTSCHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHcC-C--------C-E-EEECCCccHHHHHHHH
Confidence 578899999994 3 3677777777653 59999999998888776521 1 1 1 1111 1 000 00
Q ss_pred CCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 120 EREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 120 ~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
.....+|+++.+.+ ....+.+.+.|+++|++++.-
T Consensus 205 ~~~~~~D~vi~~~g-~~~~~~~~~~l~~~G~iv~~g 239 (327)
T 1qor_A 205 TGGKKVRVVYDSVG-RDTWERSLDCLQRRGLMVSFG 239 (327)
T ss_dssp TTTCCEEEEEECSC-GGGHHHHHHTEEEEEEEEECC
T ss_pred hCCCCceEEEECCc-hHHHHHHHHHhcCCCEEEEEe
Confidence 11246999999888 677899999999999987743
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=96.04 E-value=0.02 Score=44.84 Aligned_cols=94 Identities=20% Similarity=0.257 Sum_probs=63.5
Q ss_pred CCCCCEEEEEcC-C-CcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe-c--CCCCC--C
Q psy10572 48 IKPGARILDIGS-G-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW-N--GKHGY--E 120 (204)
Q Consensus 48 ~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-d--~~~~~--~ 120 (204)
+.++.+||-.|+ | .|..+..+++..+ ++|++++.++..++.+.+.+.. . .++.. + ..... .
T Consensus 147 ~~~g~~vlI~Ga~g~iG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~~~~~g~--------~--~~~~~~~~~~~~~~~~~ 214 (336)
T 4b7c_A 147 PKNGETVVISGAAGAVGSVAGQIARLKG--CRVVGIAGGAEKCRFLVEELGF--------D--GAIDYKNEDLAAGLKRE 214 (336)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHTTCC--------S--EEEETTTSCHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHcCC--------C--EEEECCCHHHHHHHHHh
Confidence 688999999998 3 3777777777653 5999999999888877332211 1 11111 1 00000 0
Q ss_pred CCCCeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 121 REAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 121 ~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
..+.+|+++.+... ...+.+.+.|+++|++++.
T Consensus 215 ~~~~~d~vi~~~g~-~~~~~~~~~l~~~G~iv~~ 247 (336)
T 4b7c_A 215 CPKGIDVFFDNVGG-EILDTVLTRIAFKARIVLC 247 (336)
T ss_dssp CTTCEEEEEESSCH-HHHHHHHTTEEEEEEEEEC
T ss_pred cCCCceEEEECCCc-chHHHHHHHHhhCCEEEEE
Confidence 12469999988775 5678899999999999874
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0043 Score=49.50 Aligned_cols=93 Identities=17% Similarity=0.100 Sum_probs=60.3
Q ss_pred CCCCCEEEEEc-CCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEec---CCCCCCCC
Q psy10572 48 IKPGARILDIG-SGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWN---GKHGYERE 122 (204)
Q Consensus 48 ~~~~~~vLdiG-~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d---~~~~~~~~ 122 (204)
+.++.+||-.| +|. |..+..+++..+ ++|++++ ++...+.+++.- .. .++..+ ..+.....
T Consensus 181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~G--a~Vi~~~-~~~~~~~~~~lG---------a~--~v~~~~~~~~~~~~~~~ 246 (375)
T 2vn8_A 181 NCTGKRVLILGASGGVGTFAIQVMKAWD--AHVTAVC-SQDASELVRKLG---------AD--DVIDYKSGSVEEQLKSL 246 (375)
T ss_dssp TCTTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEE-CGGGHHHHHHTT---------CS--EEEETTSSCHHHHHHTS
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHhCC--CEEEEEe-ChHHHHHHHHcC---------CC--EEEECCchHHHHHHhhc
Confidence 56788999999 564 888888888763 5899988 666666664321 11 111111 00001112
Q ss_pred CCeeEEEECCCcc-chhHHHHHhcCCCcEEEEE
Q psy10572 123 APYDIIHVSPSYF-TIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 123 ~~~D~v~~~~~~~-~~~~~~~~~Lk~gG~l~~~ 154 (204)
..+|+|+...+.. ...+...+.|+++|+++..
T Consensus 247 ~g~D~vid~~g~~~~~~~~~~~~l~~~G~iv~~ 279 (375)
T 2vn8_A 247 KPFDFILDNVGGSTETWAPDFLKKWSGATYVTL 279 (375)
T ss_dssp CCBSEEEESSCTTHHHHGGGGBCSSSCCEEEES
T ss_pred CCCCEEEECCCChhhhhHHHHHhhcCCcEEEEe
Confidence 4699999887765 3457778899999999774
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=96.01 E-value=0.036 Score=43.91 Aligned_cols=93 Identities=17% Similarity=0.138 Sum_probs=64.1
Q ss_pred CCCCCEEEEEc-CC-CcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEec---CCCCC--C
Q psy10572 48 IKPGARILDIG-SG-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWN---GKHGY--E 120 (204)
Q Consensus 48 ~~~~~~vLdiG-~G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d---~~~~~--~ 120 (204)
++++.+||-.| +| .|..+..+++..+ ++|++++.++..++.+++.-. . .++..+ ..+.. .
T Consensus 161 ~~~g~~VlV~Ga~G~iG~~~~q~a~~~G--a~Vi~~~~~~~~~~~~~~~Ga---------~--~~~~~~~~~~~~~~~~~ 227 (362)
T 2c0c_A 161 LSEGKKVLVTAAAGGTGQFAMQLSKKAK--CHVIGTCSSDEKSAFLKSLGC---------D--RPINYKTEPVGTVLKQE 227 (362)
T ss_dssp CCTTCEEEETTTTBTTHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHTTC---------S--EEEETTTSCHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHhCC--CEEEEEECCHHHHHHHHHcCC---------c--EEEecCChhHHHHHHHh
Confidence 67889999999 45 4888888888753 589999999888888765211 1 111111 00000 0
Q ss_pred CCCCeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 121 REAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 121 ~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
....+|+|+.+... ...+.+.+.|+++|++++.
T Consensus 228 ~~~g~D~vid~~g~-~~~~~~~~~l~~~G~iv~~ 260 (362)
T 2c0c_A 228 YPEGVDVVYESVGG-AMFDLAVDALATKGRLIVI 260 (362)
T ss_dssp CTTCEEEEEECSCT-HHHHHHHHHEEEEEEEEEC
T ss_pred cCCCCCEEEECCCH-HHHHHHHHHHhcCCEEEEE
Confidence 12469999988765 5678899999999998774
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=95.95 E-value=0.033 Score=43.73 Aligned_cols=94 Identities=16% Similarity=0.120 Sum_probs=63.8
Q ss_pred CCCCCEEEEEcC-C-CcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEec--CCC---CCC
Q psy10572 48 IKPGARILDIGS-G-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWN--GKH---GYE 120 (204)
Q Consensus 48 ~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d--~~~---~~~ 120 (204)
++++.+||-.|+ | .|..+..+++..+ +++++++.++...+.+++.-. . .++..+ ..+ ...
T Consensus 157 ~~~g~~VlV~Gasg~iG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~~~~ga---------~--~v~~~~~~~~~~v~~~~ 223 (342)
T 4eye_A 157 LRAGETVLVLGAAGGIGTAAIQIAKGMG--AKVIAVVNRTAATEFVKSVGA---------D--IVLPLEEGWAKAVREAT 223 (342)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHTT--CEEEEEESSGGGHHHHHHHTC---------S--EEEESSTTHHHHHHHHT
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHhcCC---------c--EEecCchhHHHHHHHHh
Confidence 578899999997 4 3788888888763 599999999988887776321 1 112111 100 011
Q ss_pred CCCCeeEEEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 121 REAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 121 ~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
....+|+|+.+.+.. ..+.+.+.|+++|++++.-
T Consensus 224 ~~~g~Dvvid~~g~~-~~~~~~~~l~~~G~iv~~G 257 (342)
T 4eye_A 224 GGAGVDMVVDPIGGP-AFDDAVRTLASEGRLLVVG 257 (342)
T ss_dssp TTSCEEEEEESCC---CHHHHHHTEEEEEEEEEC-
T ss_pred CCCCceEEEECCchh-HHHHHHHhhcCCCEEEEEE
Confidence 223699999877764 5688899999999998753
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.024 Score=44.10 Aligned_cols=92 Identities=18% Similarity=0.072 Sum_probs=61.1
Q ss_pred CCCCCEEEEEc-CCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCC-CCCCCCC
Q psy10572 48 IKPGARILDIG-SGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKH-GYEREAP 124 (204)
Q Consensus 48 ~~~~~~vLdiG-~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~ 124 (204)
+.++.+||-+| +|. |.++..+++..+ +++++++ ++...+.+++.-. + .++...-.. ....-..
T Consensus 150 ~~~g~~vlV~Ga~G~vG~~a~q~a~~~G--a~vi~~~-~~~~~~~~~~lGa---------~--~~i~~~~~~~~~~~~~g 215 (321)
T 3tqh_A 150 VKQGDVVLIHAGAGGVGHLAIQLAKQKG--TTVITTA-SKRNHAFLKALGA---------E--QCINYHEEDFLLAISTP 215 (321)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHTT--CEEEEEE-CHHHHHHHHHHTC---------S--EEEETTTSCHHHHCCSC
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHcC--CEEEEEe-ccchHHHHHHcCC---------C--EEEeCCCcchhhhhccC
Confidence 68899999996 675 888888998864 5899887 5555666654311 1 112111011 0001146
Q ss_pred eeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 125 YDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 125 ~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
+|+|+-..+.... +.+.++|+++|+++..
T Consensus 216 ~D~v~d~~g~~~~-~~~~~~l~~~G~iv~~ 244 (321)
T 3tqh_A 216 VDAVIDLVGGDVG-IQSIDCLKETGCIVSV 244 (321)
T ss_dssp EEEEEESSCHHHH-HHHGGGEEEEEEEEEC
T ss_pred CCEEEECCCcHHH-HHHHHhccCCCEEEEe
Confidence 9999987776555 8899999999999874
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=95.85 E-value=0.074 Score=41.92 Aligned_cols=94 Identities=15% Similarity=0.042 Sum_probs=62.5
Q ss_pred CCCCCEEEEEcC-C-CcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCC------CC
Q psy10572 48 IKPGARILDIGS-G-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKH------GY 119 (204)
Q Consensus 48 ~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~------~~ 119 (204)
+.++.+||-.|+ | .|..+..+++.. ++++++++.++..++.+++.- . . . ++..+-.. ..
T Consensus 160 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~~g-~--------~-~-~~~~~~~~~~~~~~~~ 226 (354)
T 2j8z_A 160 VQAGDYVLIHAGLSGVGTAAIQLTRMA--GAIPLVTAGSQKKLQMAEKLG-A--------A-A-GFNYKKEDFSEATLKF 226 (354)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHT-C--------S-E-EEETTTSCHHHHHHHH
T ss_pred CCCCCEEEEECCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHcC-C--------c-E-EEecCChHHHHHHHHH
Confidence 578899999984 3 366777777764 359999999998888774421 1 1 1 11111000 00
Q ss_pred CCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 120 EREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 120 ~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
.....+|+++.+.+.. ..+.+.+.|+++|++++.-
T Consensus 227 ~~~~~~d~vi~~~G~~-~~~~~~~~l~~~G~iv~~G 261 (354)
T 2j8z_A 227 TKGAGVNLILDCIGGS-YWEKNVNCLALDGRWVLYG 261 (354)
T ss_dssp TTTSCEEEEEESSCGG-GHHHHHHHEEEEEEEEECC
T ss_pred hcCCCceEEEECCCch-HHHHHHHhccCCCEEEEEe
Confidence 1224699999888765 6678899999999998743
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0068 Score=47.69 Aligned_cols=91 Identities=14% Similarity=0.147 Sum_probs=63.6
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCc-eEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe---cCCC---CC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEG-RVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW---NGKH---GY 119 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---d~~~---~~ 119 (204)
+ ++.+||-+|+|. |..+..+++..+ + +|++++.++..++.+++. .. .++.. +..+ ..
T Consensus 163 ~-~g~~VlV~GaG~vG~~~~q~a~~~G--a~~Vi~~~~~~~~~~~~~~l-a~-----------~v~~~~~~~~~~~~~~~ 227 (343)
T 2dq4_A 163 V-SGKSVLITGAGPIGLMAAMVVRASG--AGPILVSDPNPYRLAFARPY-AD-----------RLVNPLEEDLLEVVRRV 227 (343)
T ss_dssp C-TTSCEEEECCSHHHHHHHHHHHHTT--CCSEEEECSCHHHHGGGTTT-CS-----------EEECTTTSCHHHHHHHH
T ss_pred C-CCCEEEEECCCHHHHHHHHHHHHcC--CCEEEEECCCHHHHHHHHHh-HH-----------hccCcCccCHHHHHHHh
Confidence 5 889999999975 777888888753 4 899999998877766543 11 11111 1000 00
Q ss_pred CCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 120 EREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 120 ~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
. ...+|+|+...+.....+.+.+.|+++|++++.
T Consensus 228 ~-~~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~ 261 (343)
T 2dq4_A 228 T-GSGVEVLLEFSGNEAAIHQGLMALIPGGEARIL 261 (343)
T ss_dssp H-SSCEEEEEECSCCHHHHHHHHHHEEEEEEEEEC
T ss_pred c-CCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence 1 246999998887767788999999999998764
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.77 E-value=0.014 Score=45.48 Aligned_cols=95 Identities=13% Similarity=0.042 Sum_probs=62.1
Q ss_pred CCCCC-EEEEEcC-CC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe--cCCCCCCCC
Q psy10572 48 IKPGA-RILDIGS-GS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW--NGKHGYERE 122 (204)
Q Consensus 48 ~~~~~-~vLdiG~-G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--d~~~~~~~~ 122 (204)
+.++. +||-.|+ |. |..+..+++..+ +++++++.++..++.+++.-... -+..... +.... ...
T Consensus 146 ~~~g~~~VlV~Ga~G~vG~~~~q~a~~~G--a~vi~~~~~~~~~~~~~~lGa~~--------~i~~~~~~~~~~~~-~~~ 214 (328)
T 1xa0_A 146 LTPERGPVLVTGATGGVGSLAVSMLAKRG--YTVEASTGKAAEHDYLRVLGAKE--------VLAREDVMAERIRP-LDK 214 (328)
T ss_dssp CCGGGCCEEESSTTSHHHHHHHHHHHHTT--CCEEEEESCTTCHHHHHHTTCSE--------EEECC----------CCS
T ss_pred CCCCCceEEEecCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHcCCcE--------EEecCCcHHHHHHH-hcC
Confidence 56665 8999997 53 888888888764 58999999888888776532110 0100000 00111 112
Q ss_pred CCeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 123 APYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 123 ~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
..+|+|+..... ...+.+.+.|+++|++++.
T Consensus 215 ~~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~ 245 (328)
T 1xa0_A 215 QRWAAAVDPVGG-RTLATVLSRMRYGGAVAVS 245 (328)
T ss_dssp CCEEEEEECSTT-TTHHHHHHTEEEEEEEEEC
T ss_pred CcccEEEECCcH-HHHHHHHHhhccCCEEEEE
Confidence 469999987766 4678899999999999874
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.73 E-value=0.024 Score=43.77 Aligned_cols=75 Identities=11% Similarity=0.060 Sum_probs=53.2
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCce-EEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCC----CC
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGR-VYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYER----EA 123 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~----~~ 123 (204)
..+.+++|+.||.|.++.-+.+.. -... +.++|+++.+++.-+.+.. ...+..+|+.+.... ..
T Consensus 14 ~~~~~vidLFaG~GG~~~g~~~aG-~~~~~v~a~E~d~~a~~ty~~N~~----------~~~~~~~DI~~i~~~~i~~~~ 82 (295)
T 2qrv_A 14 RKPIRVLSLFDGIATGLLVLKDLG-IQVDRYIASEVCEDSITVGMVRHQ----------GKIMYVGDVRSVTQKHIQEWG 82 (295)
T ss_dssp CCCEEEEEETCTTTHHHHHHHHTT-BCEEEEEEECCCHHHHHHHHHHTT----------TCEEEECCGGGCCHHHHHHTC
T ss_pred CCCCEEEEeCcCccHHHHHHHHCC-CccceEEEEECCHHHHHHHHHhCC----------CCceeCCChHHccHHHhcccC
Confidence 556799999999999998887754 2223 6899999998877766542 345667776643211 13
Q ss_pred CeeEEEECCCc
Q psy10572 124 PYDIIHVSPSY 134 (204)
Q Consensus 124 ~~D~v~~~~~~ 134 (204)
.+|+++..+++
T Consensus 83 ~~Dll~ggpPC 93 (295)
T 2qrv_A 83 PFDLVIGGSPC 93 (295)
T ss_dssp CCSEEEECCCC
T ss_pred CcCEEEecCCC
Confidence 69999988765
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.018 Score=45.30 Aligned_cols=92 Identities=14% Similarity=0.014 Sum_probs=64.1
Q ss_pred CCCCCEEEEEcCC--CcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCC--CC-----
Q psy10572 48 IKPGARILDIGSG--SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGK--HG----- 118 (204)
Q Consensus 48 ~~~~~~vLdiG~G--~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~--~~----- 118 (204)
+.++.+||..|++ .|..+..+++..+ ++|++++.++...+.+++.- .. .++ |.. ..
T Consensus 167 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~G--a~V~~~~~~~~~~~~~~~~g---------~~--~~~--d~~~~~~~~~~~ 231 (347)
T 2hcy_A 167 LMAGHWVAISGAAGGLGSLAVQYAKAMG--YRVLGIDGGEGKEELFRSIG---------GE--VFI--DFTKEKDIVGAV 231 (347)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEECSTTHHHHHHHTT---------CC--EEE--ETTTCSCHHHHH
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCC--CcEEEEcCCHHHHHHHHHcC---------Cc--eEE--ecCccHhHHHHH
Confidence 6788999999983 4677777777653 59999999988877765421 11 111 211 00
Q ss_pred --CCCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 119 --YEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 119 --~~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
... +.+|+++.+.......+.+.+.|+++|+++..-
T Consensus 232 ~~~~~-~~~D~vi~~~g~~~~~~~~~~~l~~~G~iv~~g 269 (347)
T 2hcy_A 232 LKATD-GGAHGVINVSVSEAAIEASTRYVRANGTTVLVG 269 (347)
T ss_dssp HHHHT-SCEEEEEECSSCHHHHHHHTTSEEEEEEEEECC
T ss_pred HHHhC-CCCCEEEECCCcHHHHHHHHHHHhcCCEEEEEe
Confidence 011 269999998887778899999999999987743
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.11 Score=40.58 Aligned_cols=92 Identities=26% Similarity=0.172 Sum_probs=63.6
Q ss_pred CCCCCEEEEEcC--CCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC-------
Q psy10572 48 IKPGARILDIGS--GSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG------- 118 (204)
Q Consensus 48 ~~~~~~vLdiG~--G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~------- 118 (204)
+.++.+||-.|+ |.|..+..+++..+ +++++++.++..++.+++.- . . . ++ |....
T Consensus 143 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~G--~~Vi~~~~~~~~~~~~~~~g-~--------~-~-~~--d~~~~~~~~~i~ 207 (333)
T 1wly_A 143 VKPGDYVLIHAAAGGMGHIMVPWARHLG--ATVIGTVSTEEKAETARKLG-C--------H-H-TI--NYSTQDFAEVVR 207 (333)
T ss_dssp CCTTCEEEETTTTSTTHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHHT-C--------S-E-EE--ETTTSCHHHHHH
T ss_pred CCCCCEEEEECCccHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHcC-C--------C-E-EE--ECCCHHHHHHHH
Confidence 578899999995 34777777777653 59999999998887776521 1 1 1 11 11110
Q ss_pred -CCCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 119 -YEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 119 -~~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
......+|+++.+.+. ...+.+.+.|+++|++++.-
T Consensus 208 ~~~~~~~~d~vi~~~g~-~~~~~~~~~l~~~G~iv~~g 244 (333)
T 1wly_A 208 EITGGKGVDVVYDSIGK-DTLQKSLDCLRPRGMCAAYG 244 (333)
T ss_dssp HHHTTCCEEEEEECSCT-TTHHHHHHTEEEEEEEEECC
T ss_pred HHhCCCCCeEEEECCcH-HHHHHHHHhhccCCEEEEEe
Confidence 0112469999988776 67789999999999987743
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=95.61 E-value=0.034 Score=43.43 Aligned_cols=91 Identities=16% Similarity=0.108 Sum_probs=61.1
Q ss_pred CCCCCEEEEEcCC--CcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCC-CC-----
Q psy10572 48 IKPGARILDIGSG--SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKH-GY----- 119 (204)
Q Consensus 48 ~~~~~~vLdiG~G--~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~-~~----- 119 (204)
+.++.+||..|++ .|..+..+++.. +++++++|.++..++.+++. .. .. ++ |... ..
T Consensus 143 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~--G~~V~~~~~~~~~~~~~~~~-g~---------~~-~~--d~~~~~~~~~~~ 207 (333)
T 1v3u_A 143 VKGGETVLVSAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKIAYLKQI-GF---------DA-AF--NYKTVNSLEEAL 207 (333)
T ss_dssp CCSSCEEEEESTTBHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHT-TC---------SE-EE--ETTSCSCHHHHH
T ss_pred CCCCCEEEEecCCCcHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHhc-CC---------cE-EE--ecCCHHHHHHHH
Confidence 6788999999983 366666666664 35999999998888777432 11 11 11 2111 00
Q ss_pred --CCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 120 --EREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 120 --~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
...+.+|+++.+.+.. ..+.+.+.|+++|++++.
T Consensus 208 ~~~~~~~~d~vi~~~g~~-~~~~~~~~l~~~G~~v~~ 243 (333)
T 1v3u_A 208 KKASPDGYDCYFDNVGGE-FLNTVLSQMKDFGKIAIC 243 (333)
T ss_dssp HHHCTTCEEEEEESSCHH-HHHHHHTTEEEEEEEEEC
T ss_pred HHHhCCCCeEEEECCChH-HHHHHHHHHhcCCEEEEE
Confidence 0114699999888763 568888999999999774
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=95.59 E-value=0.016 Score=45.22 Aligned_cols=93 Identities=15% Similarity=0.115 Sum_probs=63.1
Q ss_pred CCCCC-EEEEEcC-CC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEec----CCCCCC
Q psy10572 48 IKPGA-RILDIGS-GS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWN----GKHGYE 120 (204)
Q Consensus 48 ~~~~~-~vLdiG~-G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d----~~~~~~ 120 (204)
+.++. +||-.|+ |. |..+..+++..+ +++++++.++..++.+++.-.. .+ +-..+ .... .
T Consensus 147 ~~~g~~~VlV~Ga~G~vG~~~~q~a~~~G--a~vi~~~~~~~~~~~~~~lGa~---------~v-~~~~~~~~~~~~~-~ 213 (330)
T 1tt7_A 147 LSPEKGSVLVTGATGGVGGIAVSMLNKRG--YDVVASTGNREAADYLKQLGAS---------EV-ISREDVYDGTLKA-L 213 (330)
T ss_dssp CCGGGCCEEEESTTSHHHHHHHHHHHHHT--CCEEEEESSSSTHHHHHHHTCS---------EE-EEHHHHCSSCCCS-S
T ss_pred cCCCCceEEEECCCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHcCCc---------EE-EECCCchHHHHHH-h
Confidence 56665 8999997 54 888888888764 5899999988877777653211 11 11111 0111 1
Q ss_pred CCCCeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 121 REAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 121 ~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
....+|+|+..... ...+.+.+.|+++|++++.
T Consensus 214 ~~~~~d~vid~~g~-~~~~~~~~~l~~~G~iv~~ 246 (330)
T 1tt7_A 214 SKQQWQGAVDPVGG-KQLASLLSKIQYGGSVAVS 246 (330)
T ss_dssp CCCCEEEEEESCCT-HHHHHHHTTEEEEEEEEEC
T ss_pred hcCCccEEEECCcH-HHHHHHHHhhcCCCEEEEE
Confidence 22469999888776 4678899999999999874
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=95.55 E-value=0.051 Score=42.66 Aligned_cols=92 Identities=14% Similarity=0.125 Sum_probs=62.8
Q ss_pred CCCCCEEEEEc-CCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEec--CCC---CCC
Q psy10572 48 IKPGARILDIG-SGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWN--GKH---GYE 120 (204)
Q Consensus 48 ~~~~~~vLdiG-~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d--~~~---~~~ 120 (204)
+.++.+||-+| +|. |..+..+++..+ ++|+++ .++..++.+++.-. .. +..+ ..+ ...
T Consensus 148 ~~~g~~VlV~Ga~g~iG~~~~q~a~~~G--a~Vi~~-~~~~~~~~~~~lGa---------~~---i~~~~~~~~~~~~~~ 212 (343)
T 3gaz_A 148 VQDGQTVLIQGGGGGVGHVAIQIALARG--ARVFAT-ARGSDLEYVRDLGA---------TP---IDASREPEDYAAEHT 212 (343)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEE-ECHHHHHHHHHHTS---------EE---EETTSCHHHHHHHHH
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHCC--CEEEEE-eCHHHHHHHHHcCC---------CE---eccCCCHHHHHHHHh
Confidence 57889999999 454 888888888753 589999 78888777765311 11 2111 000 001
Q ss_pred CCCCeeEEEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 121 REAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 121 ~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
....+|+|+.+... ...+.+.+.|+++|++++.-
T Consensus 213 ~~~g~D~vid~~g~-~~~~~~~~~l~~~G~iv~~g 246 (343)
T 3gaz_A 213 AGQGFDLVYDTLGG-PVLDASFSAVKRFGHVVSCL 246 (343)
T ss_dssp TTSCEEEEEESSCT-HHHHHHHHHEEEEEEEEESC
T ss_pred cCCCceEEEECCCc-HHHHHHHHHHhcCCeEEEEc
Confidence 22469999987764 56788899999999998743
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=95.55 E-value=0.04 Score=43.46 Aligned_cols=93 Identities=17% Similarity=0.145 Sum_probs=63.5
Q ss_pred CCCCCEEEEEc-CC-CcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCC------CC
Q psy10572 48 IKPGARILDIG-SG-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKH------GY 119 (204)
Q Consensus 48 ~~~~~~vLdiG-~G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~------~~ 119 (204)
++++.+||-.| +| .|..+..+++..+ ++|++++.++..++.+++.-.. .++..+-.. ..
T Consensus 165 ~~~g~~VlV~Gg~g~iG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~~~lGa~-----------~~~~~~~~~~~~~~~~~ 231 (353)
T 4dup_A 165 LTEGESVLIHGGTSGIGTTAIQLARAFG--AEVYATAGSTGKCEACERLGAK-----------RGINYRSEDFAAVIKAE 231 (353)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHHTCS-----------EEEETTTSCHHHHHHHH
T ss_pred CCCCCEEEEEcCCCHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHhcCCC-----------EEEeCCchHHHHHHHHH
Confidence 57889999984 44 3777888888753 5899999999988888753211 111111000 00
Q ss_pred CCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 120 EREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 120 ~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
. ...+|+++.+.+.. ..+.+.+.|+++|++++.-
T Consensus 232 ~-~~g~Dvvid~~g~~-~~~~~~~~l~~~G~iv~~g 265 (353)
T 4dup_A 232 T-GQGVDIILDMIGAA-YFERNIASLAKDGCLSIIA 265 (353)
T ss_dssp H-SSCEEEEEESCCGG-GHHHHHHTEEEEEEEEECC
T ss_pred h-CCCceEEEECCCHH-HHHHHHHHhccCCEEEEEE
Confidence 1 24699999887764 6688899999999988754
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=95.32 E-value=0.04 Score=42.98 Aligned_cols=71 Identities=13% Similarity=-0.010 Sum_probs=51.2
Q ss_pred CEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCC-CCCeeEEEE
Q psy10572 52 ARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYER-EAPYDIIHV 130 (204)
Q Consensus 52 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~v~~ 130 (204)
.+|||+-||.|.++.-+.+.. - -.+.++|+++.+++.-+.+.. ..++.+|+.+.... -...|+++.
T Consensus 1 mkvidLFsG~GG~~~G~~~aG-~-~~v~a~e~d~~a~~ty~~N~~-----------~~~~~~DI~~i~~~~~~~~D~l~g 67 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKAG-F-RIICANEYDKSIWKTYESNHS-----------AKLIKGDISKISSDEFPKCDGIIG 67 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHTT-C-EEEEEEECCTTTHHHHHHHCC-----------SEEEESCGGGCCGGGSCCCSEEEC
T ss_pred CeEEEeCcCccHHHHHHHHCC-C-EEEEEEeCCHHHHHHHHHHCC-----------CCcccCChhhCCHhhCCcccEEEe
Confidence 379999999999988777653 2 257789999998888777642 24567786643321 246899998
Q ss_pred CCCcc
Q psy10572 131 SPSYF 135 (204)
Q Consensus 131 ~~~~~ 135 (204)
.+++.
T Consensus 68 gpPCQ 72 (331)
T 3ubt_Y 68 GPPSQ 72 (331)
T ss_dssp CCCGG
T ss_pred cCCCC
Confidence 88774
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=95.28 E-value=0.023 Score=49.05 Aligned_cols=105 Identities=11% Similarity=0.003 Sum_probs=64.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHh------CC-----CceEEEEEcCHHHHHHHHHH--------------hhhcCccc-
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMA------GP-----EGRVYGVEHVMELAESSIKN--------------IDKGNSEL- 102 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~------~~-----~~~v~~vD~~~~~~~~a~~~--------------~~~~~~~~- 102 (204)
++.-+|+|+|.|+|.-.+.+.+.+ +| ..+++++|..|-..+.+++. +..+....
T Consensus 57 ~~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 136 (689)
T 3pvc_A 57 QQSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLA 136 (689)
T ss_dssp SSEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCS
T ss_pred CCceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCC
Confidence 345699999999999877766543 01 14789999855333333321 11111000
Q ss_pred ------cC--ccceEEEEecCCCCCCC-----CCCeeEEEECCCcc---------chhHHHHHhcCCCcEEEE
Q psy10572 103 ------LD--QGRVQFVVWNGKHGYER-----EAPYDIIHVSPSYF---------TIPQKLLDQLVPGGRMVM 153 (204)
Q Consensus 103 ------~~--~~~~~~~~~d~~~~~~~-----~~~~D~v~~~~~~~---------~~~~~~~~~Lk~gG~l~~ 153 (204)
.. .-.+++..+|+.+.... ...+|.++.++..+ .++..+.+++++||.+..
T Consensus 137 ~~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t 209 (689)
T 3pvc_A 137 GCHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFST 209 (689)
T ss_dssp EEEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEE
T ss_pred CceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEe
Confidence 00 11466777886533221 36799999976542 256888899999998765
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=95.23 E-value=0.18 Score=33.92 Aligned_cols=94 Identities=10% Similarity=-0.074 Sum_probs=59.4
Q ss_pred CCEEEEEcCCCcHHHHHHHHHhC-CCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC----CCCCCe
Q psy10572 51 GARILDIGSGSGYLTACLAYMAG-PEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY----EREAPY 125 (204)
Q Consensus 51 ~~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~ 125 (204)
..+|+-+|+|. ++..+++.+. .+..++++|.++..++.++. ..+.++.+|..... ..-..+
T Consensus 7 ~~~viIiG~G~--~G~~la~~L~~~g~~v~vid~~~~~~~~~~~------------~g~~~i~gd~~~~~~l~~a~i~~a 72 (140)
T 3fwz_A 7 CNHALLVGYGR--VGSLLGEKLLASDIPLVVIETSRTRVDELRE------------RGVRAVLGNAANEEIMQLAHLECA 72 (140)
T ss_dssp CSCEEEECCSH--HHHHHHHHHHHTTCCEEEEESCHHHHHHHHH------------TTCEEEESCTTSHHHHHHTTGGGC
T ss_pred CCCEEEECcCH--HHHHHHHHHHHCCCCEEEEECCHHHHHHHHH------------cCCCEEECCCCCHHHHHhcCcccC
Confidence 45788899864 3333333321 23589999999998887754 14667888865321 112468
Q ss_pred eEEEECCCccch---hHHHHHhcCCCcEEEEEecCC
Q psy10572 126 DIIHVSPSYFTI---PQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 126 D~v~~~~~~~~~---~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
|.+++..+.... .-...+.+.|+..++....+.
T Consensus 73 d~vi~~~~~~~~n~~~~~~a~~~~~~~~iiar~~~~ 108 (140)
T 3fwz_A 73 KWLILTIPNGYEAGEIVASARAKNPDIEIIARAHYD 108 (140)
T ss_dssp SEEEECCSCHHHHHHHHHHHHHHCSSSEEEEEESSH
T ss_pred CEEEEECCChHHHHHHHHHHHHHCCCCeEEEEECCH
Confidence 988877665432 234556678888887765544
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=95.20 E-value=0.083 Score=42.32 Aligned_cols=101 Identities=20% Similarity=0.144 Sum_probs=58.9
Q ss_pred CCcccCChHHHHHHHHHHhcc-------C--CCCCEEEEEcCCCcHHHHHHHHHhC------CCceEEEEEcCHHHHHHH
Q psy10572 27 YGADISSPHIHAQMLELLKDK-------I--KPGARILDIGSGSGYLTACLAYMAG------PEGRVYGVEHVMELAESS 91 (204)
Q Consensus 27 ~~~~~~~~~~~~~~~~~l~~~-------~--~~~~~vLdiG~G~G~~~~~l~~~~~------~~~~v~~vD~~~~~~~~a 91 (204)
.|.+++++++...+-+.+... . +....|+|+|.|.|.++..+.+.+. ...+++.||+|+.+.+.-
T Consensus 48 ~GDF~Tapeis~~FGe~la~~~~~~w~~~g~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q 127 (387)
T 1zkd_A 48 EGDFTTSPEISQMFGELLGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQ 127 (387)
T ss_dssp ---CCSHHHHCHHHHHHHHHHHHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHH
T ss_pred CCCeeCCCchHHHHHHHHHHHHHHHHHHcCCCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHH
Confidence 456777777654443333211 1 2334799999999999988876542 234899999999988866
Q ss_pred HHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEEECCCccchh
Q psy10572 92 IKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIP 138 (204)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~ 138 (204)
++.+.. ..++.+.. -.+..+ .. .-+|++|-.+..++
T Consensus 128 ~~~L~~-------~~~v~W~~--~l~~lp-~~-~~~viANE~fDAlP 163 (387)
T 1zkd_A 128 QTLLAG-------IRNIHWHD--SFEDVP-EG-PAVILANEYFDVLP 163 (387)
T ss_dssp HHHSTT-------CSSEEEES--SGGGSC-CS-SEEEEEESSGGGSC
T ss_pred HHHhcC-------CCCeEEeC--ChhhcC-CC-CeEEEeccccccCc
Confidence 665533 12344432 111111 12 45777777665544
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.17 E-value=0.1 Score=41.09 Aligned_cols=94 Identities=23% Similarity=0.246 Sum_probs=62.0
Q ss_pred CCCCCEEEEEcC-C-CcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCC------CC
Q psy10572 48 IKPGARILDIGS-G-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKH------GY 119 (204)
Q Consensus 48 ~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~------~~ 119 (204)
+.++.+||-.|+ | .|..+..+++..+ +++++++.++..++.+++.- .. .++..+-.+ ..
T Consensus 168 ~~~g~~vlV~GasggiG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~~~~g---------a~--~~~d~~~~~~~~~~~~~ 234 (351)
T 1yb5_A 168 VKAGESVLVHGASGGVGLAACQIARAYG--LKILGTAGTEEGQKIVLQNG---------AH--EVFNHREVNYIDKIKKY 234 (351)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHTT---------CS--EEEETTSTTHHHHHHHH
T ss_pred CCCcCEEEEECCCChHHHHHHHHHHHCC--CEEEEEeCChhHHHHHHHcC---------CC--EEEeCCCchHHHHHHHH
Confidence 678899999997 3 3677777777653 58999999998887665421 11 111111000 00
Q ss_pred CCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 120 EREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 120 ~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
.....+|+++.+.+.. ....+.+.|+++|++++.-
T Consensus 235 ~~~~~~D~vi~~~G~~-~~~~~~~~l~~~G~iv~~g 269 (351)
T 1yb5_A 235 VGEKGIDIIIEMLANV-NLSKDLSLLSHGGRVIVVG 269 (351)
T ss_dssp HCTTCEEEEEESCHHH-HHHHHHHHEEEEEEEEECC
T ss_pred cCCCCcEEEEECCChH-HHHHHHHhccCCCEEEEEe
Confidence 1123699999887654 5677889999999988743
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=95.15 E-value=0.049 Score=45.13 Aligned_cols=89 Identities=17% Similarity=0.048 Sum_probs=61.9
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCee
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYD 126 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D 126 (204)
..++.+|+-+|+|. |......++..+ ++|+++|.++...+.+... ...+. +..+. . ...|
T Consensus 271 ~l~GktV~IiG~G~IG~~~A~~lka~G--a~Viv~d~~~~~~~~A~~~------------Ga~~~--~l~e~-l--~~aD 331 (494)
T 3ce6_A 271 LIGGKKVLICGYGDVGKGCAEAMKGQG--ARVSVTEIDPINALQAMME------------GFDVV--TVEEA-I--GDAD 331 (494)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHT------------TCEEC--CHHHH-G--GGCS
T ss_pred CCCcCEEEEEccCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHc------------CCEEe--cHHHH-H--hCCC
Confidence 46788999999986 766666666653 5999999999877666532 11211 11111 1 3589
Q ss_pred EEEECCCccchhH-HHHHhcCCCcEEEEEe
Q psy10572 127 IIHVSPSYFTIPQ-KLLDQLVPGGRMVMPV 155 (204)
Q Consensus 127 ~v~~~~~~~~~~~-~~~~~Lk~gG~l~~~~ 155 (204)
+|+...+...++. ...+.+|+||+++..-
T Consensus 332 vVi~atgt~~~i~~~~l~~mk~ggilvnvG 361 (494)
T 3ce6_A 332 IVVTATGNKDIIMLEHIKAMKDHAILGNIG 361 (494)
T ss_dssp EEEECSSSSCSBCHHHHHHSCTTCEEEECS
T ss_pred EEEECCCCHHHHHHHHHHhcCCCcEEEEeC
Confidence 9998877777554 7889999999987643
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=95.14 E-value=0.024 Score=44.59 Aligned_cols=74 Identities=18% Similarity=0.094 Sum_probs=52.2
Q ss_pred CEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCC---CCCCeeEE
Q psy10572 52 ARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE---REAPYDII 128 (204)
Q Consensus 52 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~D~v 128 (204)
.+++|+.||.|.++.-+.+..-..-.+.++|+++.+++.-+.|... ..++.+|+.+... +...+|++
T Consensus 4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~----------~~~~~~DI~~~~~~~~~~~~~D~l 73 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPE----------TNLLNRNIQQLTPQVIKKWNVDTI 73 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT----------SCEECCCGGGCCHHHHHHTTCCEE
T ss_pred CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCC----------CceeccccccCCHHHhccCCCCEE
Confidence 4799999999999988877641112578999999998888777532 3355666554321 12368999
Q ss_pred EECCCcc
Q psy10572 129 HVSPSYF 135 (204)
Q Consensus 129 ~~~~~~~ 135 (204)
+..+++.
T Consensus 74 ~ggpPCQ 80 (333)
T 4h0n_A 74 LMSPPCQ 80 (333)
T ss_dssp EECCCCC
T ss_pred EecCCCc
Confidence 9887763
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=95.05 E-value=0.029 Score=44.88 Aligned_cols=92 Identities=17% Similarity=0.196 Sum_probs=58.1
Q ss_pred CCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEE---ecCCCCCCCCCCe
Q psy10572 50 PGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVV---WNGKHGYEREAPY 125 (204)
Q Consensus 50 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~d~~~~~~~~~~~ 125 (204)
++.+|+-+|+|. |......++.++ ++|+++|.++..++.++..+.. .+.... .++.+. . ...
T Consensus 167 ~g~~V~ViG~G~iG~~~a~~a~~~G--a~V~~~d~~~~~l~~~~~~~g~---------~~~~~~~~~~~l~~~-l--~~a 232 (377)
T 2vhw_A 167 EPADVVVIGAGTAGYNAARIANGMG--ATVTVLDINIDKLRQLDAEFCG---------RIHTRYSSAYELEGA-V--KRA 232 (377)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHTTT---------SSEEEECCHHHHHHH-H--HHC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC--CEEEEEeCCHHHHHHHHHhcCC---------eeEeccCCHHHHHHH-H--cCC
Confidence 467999999975 666666666553 5899999999888777654321 111111 011011 1 248
Q ss_pred eEEEECCCccc------hhHHHHHhcCCCcEEEEEe
Q psy10572 126 DIIHVSPSYFT------IPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 126 D~v~~~~~~~~------~~~~~~~~Lk~gG~l~~~~ 155 (204)
|+|+.....+. +.+...+.++|||.++-.-
T Consensus 233 DvVi~~~~~p~~~t~~li~~~~l~~mk~g~~iV~va 268 (377)
T 2vhw_A 233 DLVIGAVLVPGAKAPKLVSNSLVAHMKPGAVLVDIA 268 (377)
T ss_dssp SEEEECCCCTTSCCCCCBCHHHHTTSCTTCEEEEGG
T ss_pred CEEEECCCcCCCCCcceecHHHHhcCCCCcEEEEEe
Confidence 99988553332 2578889999999887644
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=95.03 E-value=0.082 Score=41.63 Aligned_cols=91 Identities=16% Similarity=0.195 Sum_probs=61.7
Q ss_pred CCCC--CEEEEEcC-C-CcHHHHHHHHHhCCCc-eEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC----
Q psy10572 48 IKPG--ARILDIGS-G-SGYLTACLAYMAGPEG-RVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG---- 118 (204)
Q Consensus 48 ~~~~--~~vLdiG~-G-~G~~~~~l~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~---- 118 (204)
+.++ .+||-.|+ | .|..+..+++.. ++ +|++++.++..++.+++.+.. . .++ |....
T Consensus 156 ~~~g~~~~vlI~GasggiG~~~~~~a~~~--Ga~~Vi~~~~~~~~~~~~~~~~g~--------~--~~~--d~~~~~~~~ 221 (357)
T 2zb4_A 156 ITAGSNKTMVVSGAAGACGSVAGQIGHFL--GCSRVVGICGTHEKCILLTSELGF--------D--AAI--NYKKDNVAE 221 (357)
T ss_dssp CCTTSCCEEEESSTTBHHHHHHHHHHHHT--TCSEEEEEESCHHHHHHHHHTSCC--------S--EEE--ETTTSCHHH
T ss_pred CCCCCccEEEEECCCcHHHHHHHHHHHHC--CCCeEEEEeCCHHHHHHHHHHcCC--------c--eEE--ecCchHHHH
Confidence 6788 99999998 3 366666677764 35 899999998877777643211 1 111 11110
Q ss_pred ----CCCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 119 ----YEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 119 ----~~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
... +.+|+++.+.+. ...+.+.+.|+++|++++.
T Consensus 222 ~~~~~~~-~~~d~vi~~~G~-~~~~~~~~~l~~~G~iv~~ 259 (357)
T 2zb4_A 222 QLRESCP-AGVDVYFDNVGG-NISDTVISQMNENSHIILC 259 (357)
T ss_dssp HHHHHCT-TCEEEEEESCCH-HHHHHHHHTEEEEEEEEEC
T ss_pred HHHHhcC-CCCCEEEECCCH-HHHHHHHHHhccCcEEEEE
Confidence 011 269999988875 6678889999999999864
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=94.99 E-value=0.07 Score=43.48 Aligned_cols=94 Identities=16% Similarity=0.032 Sum_probs=64.0
Q ss_pred CCCCCEEEEEcC-CC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEE--ecCCC------
Q psy10572 48 IKPGARILDIGS-GS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVV--WNGKH------ 117 (204)
Q Consensus 48 ~~~~~~vLdiG~-G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~d~~~------ 117 (204)
+.++.+||-.|+ |. |..+..+++..+ +++++++.++..++.+++.-. ..+ +.. .+...
T Consensus 218 ~~~g~~VlV~GasG~iG~~a~qla~~~G--a~vi~~~~~~~~~~~~~~lGa---------~~~-i~~~~~~~~~~~~~~~ 285 (447)
T 4a0s_A 218 MKQGDIVLIWGASGGLGSYAIQFVKNGG--GIPVAVVSSAQKEAAVRALGC---------DLV-INRAELGITDDIADDP 285 (447)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHTTC---------CCE-EEHHHHTCCTTGGGCH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHhcCC---------CEE-Eecccccccccccccc
Confidence 678899999997 53 778888888753 589999999988888754311 111 111 11100
Q ss_pred ---------------CCCCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 118 ---------------GYEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 118 ---------------~~~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
... ...+|+|+.+.+. ...+.+.+.|+++|++++.-
T Consensus 286 ~~~~~~~~~~~~~v~~~~-g~g~Dvvid~~G~-~~~~~~~~~l~~~G~iv~~G 336 (447)
T 4a0s_A 286 RRVVETGRKLAKLVVEKA-GREPDIVFEHTGR-VTFGLSVIVARRGGTVVTCG 336 (447)
T ss_dssp HHHHHHHHHHHHHHHHHH-SSCCSEEEECSCH-HHHHHHHHHSCTTCEEEESC
T ss_pred cccchhhhHHHHHHHHHh-CCCceEEEECCCc-hHHHHHHHHHhcCCEEEEEe
Confidence 001 2469999988776 46688889999999998743
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=94.96 E-value=0.052 Score=42.53 Aligned_cols=78 Identities=13% Similarity=-0.009 Sum_probs=54.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceE-EEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCC---CCCC
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRV-YGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE---REAP 124 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v-~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~ 124 (204)
+...+++|+.||.|.++.-+.+..-.--.+ .++|+++.+++..+.|... . ++.+|+.+... +...
T Consensus 8 ~~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~----------~-~~~~DI~~~~~~~i~~~~ 76 (327)
T 3qv2_A 8 QKQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKE----------E-VQVKNLDSISIKQIESLN 76 (327)
T ss_dssp CCCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCC----------C-CBCCCTTTCCHHHHHHTC
T ss_pred CCCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCC----------C-cccCChhhcCHHHhccCC
Confidence 445699999999999998887753111246 7999999999888887632 1 45566554321 1126
Q ss_pred eeEEEECCCccch
Q psy10572 125 YDIIHVSPSYFTI 137 (204)
Q Consensus 125 ~D~v~~~~~~~~~ 137 (204)
+|+++..+++..+
T Consensus 77 ~Dil~ggpPCQ~f 89 (327)
T 3qv2_A 77 CNTWFMSPPCQPY 89 (327)
T ss_dssp CCEEEECCCCTTC
T ss_pred CCEEEecCCccCc
Confidence 8999988876543
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=94.94 E-value=0.021 Score=44.00 Aligned_cols=52 Identities=33% Similarity=0.566 Sum_probs=39.3
Q ss_pred cceEEEEecCCCC--CCCCCCeeEEEECCCccc--------------------------hhHHHHHhcCCCcEEEEEecC
Q psy10572 106 GRVQFVVWNGKHG--YEREAPYDIIHVSPSYFT--------------------------IPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 106 ~~~~~~~~d~~~~--~~~~~~~D~v~~~~~~~~--------------------------~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
.+++++++|..+. ..+.++||+|++++++.. ++.++.++|+|||.+++.+..
T Consensus 20 ~~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~d 99 (297)
T 2zig_A 20 GVHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVGD 99 (297)
T ss_dssp -CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred cCCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEECC
Confidence 4678999997652 234578999999999841 235677999999999998764
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=94.89 E-value=0.23 Score=39.34 Aligned_cols=92 Identities=8% Similarity=-0.043 Sum_probs=62.4
Q ss_pred CCCCEEEEEcC-C-CcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEec---CCCCC--CC
Q psy10572 49 KPGARILDIGS-G-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWN---GKHGY--ER 121 (204)
Q Consensus 49 ~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d---~~~~~--~~ 121 (204)
.++.+||-+|+ | .|.++..+++..+ ++++++. ++..++.+++.-. . .++... ..+.. ..
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~G--a~Vi~~~-~~~~~~~~~~lGa---------~--~vi~~~~~~~~~~v~~~t 228 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLSG--YIPIATC-SPHNFDLAKSRGA---------E--EVFDYRAPNLAQTIRTYT 228 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHTT--CEEEEEE-CGGGHHHHHHTTC---------S--EEEETTSTTHHHHHHHHT
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHCC--CEEEEEe-CHHHHHHHHHcCC---------c--EEEECCCchHHHHHHHHc
Confidence 67889999998 4 4888888888764 5888885 7877777765321 1 112111 00000 11
Q ss_pred CCCeeEEEECCCccchhHHHHHhc-CCCcEEEEE
Q psy10572 122 EAPYDIIHVSPSYFTIPQKLLDQL-VPGGRMVMP 154 (204)
Q Consensus 122 ~~~~D~v~~~~~~~~~~~~~~~~L-k~gG~l~~~ 154 (204)
.+.+|+++-........+.+.+.| +++|++++.
T Consensus 229 ~g~~d~v~d~~g~~~~~~~~~~~l~~~~G~iv~~ 262 (371)
T 3gqv_A 229 KNNLRYALDCITNVESTTFCFAAIGRAGGHYVSL 262 (371)
T ss_dssp TTCCCEEEESSCSHHHHHHHHHHSCTTCEEEEES
T ss_pred cCCccEEEECCCchHHHHHHHHHhhcCCCEEEEE
Confidence 234999998888777788889999 699998774
|
| >1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.86 E-value=0.017 Score=45.69 Aligned_cols=94 Identities=15% Similarity=0.084 Sum_probs=62.6
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe-c----CCCCCC
Q psy10572 47 KIKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW-N----GKHGYE 120 (204)
Q Consensus 47 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-d----~~~~~~ 120 (204)
.++++.+||-+|+|. |.++..+++.. .+++|+++|.++..++.+++.-.. .++.. + ......
T Consensus 183 ~~~~g~~VlV~GaG~vG~~avqlak~~-~Ga~Vi~~~~~~~~~~~~~~lGa~-----------~vi~~~~~~~~~v~~~~ 250 (359)
T 1h2b_A 183 TLYPGAYVAIVGVGGLGHIAVQLLKVM-TPATVIALDVKEEKLKLAERLGAD-----------HVVDARRDPVKQVMELT 250 (359)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHH-CCCEEEEEESSHHHHHHHHHTTCS-----------EEEETTSCHHHHHHHHT
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHHhCCC-----------EEEeccchHHHHHHHHh
Confidence 368899999999975 77788888876 135899999999988888643211 11111 1 000111
Q ss_pred CCCCeeEEEECCCccc--hhHHHHHhcCCCcEEEEE
Q psy10572 121 REAPYDIIHVSPSYFT--IPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 121 ~~~~~D~v~~~~~~~~--~~~~~~~~Lk~gG~l~~~ 154 (204)
....+|+|+-..+... ..+.+.+. ++|++++.
T Consensus 251 ~g~g~Dvvid~~G~~~~~~~~~~~~~--~~G~~v~~ 284 (359)
T 1h2b_A 251 RGRGVNVAMDFVGSQATVDYTPYLLG--RMGRLIIV 284 (359)
T ss_dssp TTCCEEEEEESSCCHHHHHHGGGGEE--EEEEEEEC
T ss_pred CCCCCcEEEECCCCchHHHHHHHhhc--CCCEEEEE
Confidence 1236999998877664 55666666 99998774
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=94.82 E-value=0.11 Score=44.66 Aligned_cols=105 Identities=11% Similarity=-0.004 Sum_probs=62.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHh------CC-----CceEEEEEc---CHHHHHHHHHH-----------hhhcCccccC
Q psy10572 50 PGARILDIGSGSGYLTACLAYMA------GP-----EGRVYGVEH---VMELAESSIKN-----------IDKGNSELLD 104 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~------~~-----~~~v~~vD~---~~~~~~~a~~~-----------~~~~~~~~~~ 104 (204)
+.-+|+|+|.|+|.-.....+.. +| .-+++++|. +...+..+-.. ...+.....+
T Consensus 66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (676)
T 3ps9_A 66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 145 (676)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSE
T ss_pred CceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCC
Confidence 34699999999999766665543 11 236899998 55555533221 1111100000
Q ss_pred ---------ccceEEEEecCCCCCC-----CCCCeeEEEECCCcc---------chhHHHHHhcCCCcEEEEE
Q psy10572 105 ---------QGRVQFVVWNGKHGYE-----REAPYDIIHVSPSYF---------TIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 105 ---------~~~~~~~~~d~~~~~~-----~~~~~D~v~~~~~~~---------~~~~~~~~~Lk~gG~l~~~ 154 (204)
.-.+++..+|+.+... ....+|+|+.++..+ .+++.+.++++|||.+...
T Consensus 146 ~~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~ 218 (676)
T 3ps9_A 146 CHRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATF 218 (676)
T ss_dssp EEEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEES
T ss_pred ceEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEec
Confidence 0234456666543221 136799999976542 2568899999999998653
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=94.80 E-value=0.053 Score=43.02 Aligned_cols=95 Identities=19% Similarity=0.150 Sum_probs=59.6
Q ss_pred CCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEE
Q psy10572 51 GARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIH 129 (204)
Q Consensus 51 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 129 (204)
+.+|+-+|+|. |..+..+++..+ ++|+++|.++..++.+...... .+.....+.......-..+|+|+
T Consensus 167 ~~~VlViGaGgvG~~aa~~a~~~G--a~V~v~dr~~~r~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~DvVI 235 (361)
T 1pjc_A 167 PGKVVILGGGVVGTEAAKMAVGLG--AQVQIFDINVERLSYLETLFGS---------RVELLYSNSAEIETAVAEADLLI 235 (361)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHGG---------GSEEEECCHHHHHHHHHTCSEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC--CEEEEEeCCHHHHHHHHHhhCc---------eeEeeeCCHHHHHHHHcCCCEEE
Confidence 47999999975 666666666653 4899999999888877655432 12111111000000002589998
Q ss_pred ECCCccc------hhHHHHHhcCCCcEEEEEec
Q psy10572 130 VSPSYFT------IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 130 ~~~~~~~------~~~~~~~~Lk~gG~l~~~~~ 156 (204)
...+... +.+.....++++|.++....
T Consensus 236 ~~~~~~~~~~~~li~~~~~~~~~~g~~ivdv~~ 268 (361)
T 1pjc_A 236 GAVLVPGRRAPILVPASLVEQMRTGSVIVDVAV 268 (361)
T ss_dssp ECCCCTTSSCCCCBCHHHHTTSCTTCEEEETTC
T ss_pred ECCCcCCCCCCeecCHHHHhhCCCCCEEEEEec
Confidence 7665433 25778889999998876543
|
| >4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A* | Back alignment and structure |
|---|
Probab=94.66 E-value=0.046 Score=44.37 Aligned_cols=71 Identities=17% Similarity=0.216 Sum_probs=49.4
Q ss_pred CCcccCChHHHHHHHHHHhccC------CCCCEEEEEcCCCcHHHHHHHHHhC---C-CceEEEEEcCHHHHHHHHHHhh
Q psy10572 27 YGADISSPHIHAQMLELLKDKI------KPGARILDIGSGSGYLTACLAYMAG---P-EGRVYGVEHVMELAESSIKNID 96 (204)
Q Consensus 27 ~~~~~~~~~~~~~~~~~l~~~~------~~~~~vLdiG~G~G~~~~~l~~~~~---~-~~~v~~vD~~~~~~~~a~~~~~ 96 (204)
.|-+++++++...+-+.+...+ .....|+|+|.|+|.++..+.+.+. + ..+++.||+|+.+.+.-++++.
T Consensus 108 ~GDFiTAPeiS~~FGe~la~~~~~~~~~~g~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~ 187 (432)
T 4f3n_A 108 GSDFVTAPELSPLFAQTLARPVAQALDASGTRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLG 187 (432)
T ss_dssp --CCSSCGGGHHHHHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHH
T ss_pred CCCccCchhhhHHHHHHHHHHHHHHHHhcCCCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHh
Confidence 4788888887665544443111 1247999999999999988876541 1 2379999999998888777765
Q ss_pred h
Q psy10572 97 K 97 (204)
Q Consensus 97 ~ 97 (204)
.
T Consensus 188 ~ 188 (432)
T 4f3n_A 188 A 188 (432)
T ss_dssp H
T ss_pred c
Confidence 3
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.07 E-value=0.075 Score=42.26 Aligned_cols=93 Identities=14% Similarity=0.065 Sum_probs=55.6
Q ss_pred CCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCC--CCCCCCCCee
Q psy10572 50 PGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGK--HGYEREAPYD 126 (204)
Q Consensus 50 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~~D 126 (204)
++.+|+-+|+|. |......++.. +++|+++|.++..++.+...... .+.....+.. .... ..+|
T Consensus 165 ~~~~V~ViGaG~iG~~~a~~l~~~--Ga~V~~~d~~~~~~~~~~~~~g~---------~~~~~~~~~~~l~~~~--~~~D 231 (369)
T 2eez_A 165 APASVVILGGGTVGTNAAKIALGM--GAQVTILDVNHKRLQYLDDVFGG---------RVITLTATEANIKKSV--QHAD 231 (369)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTT---------SEEEEECCHHHHHHHH--HHCS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHHhcCc---------eEEEecCCHHHHHHHH--hCCC
Confidence 357999999964 55555555554 35999999999877766543211 1111111100 0001 2589
Q ss_pred EEEECCCccc------hhHHHHHhcCCCcEEEEEe
Q psy10572 127 IIHVSPSYFT------IPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 127 ~v~~~~~~~~------~~~~~~~~Lk~gG~l~~~~ 155 (204)
+|+...+... +.+...+.+++||.++..-
T Consensus 232 vVi~~~g~~~~~~~~li~~~~l~~mk~gg~iV~v~ 266 (369)
T 2eez_A 232 LLIGAVLVPGAKAPKLVTRDMLSLMKEGAVIVDVA 266 (369)
T ss_dssp EEEECCC-------CCSCHHHHTTSCTTCEEEECC
T ss_pred EEEECCCCCccccchhHHHHHHHhhcCCCEEEEEe
Confidence 9988776543 3578889999999876543
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=94.04 E-value=0.28 Score=37.60 Aligned_cols=91 Identities=12% Similarity=0.060 Sum_probs=57.1
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEE-ecCCCCCCCCCCee
Q psy10572 49 KPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVV-WNGKHGYEREAPYD 126 (204)
Q Consensus 49 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~D 126 (204)
-.+.+|+-+|+|. |......++.++ ++|+++|.++...+.+... ...+.. .+..+. . ...|
T Consensus 153 l~g~~v~IiG~G~iG~~~a~~l~~~G--~~V~~~dr~~~~~~~~~~~------------g~~~~~~~~l~~~-l--~~aD 215 (293)
T 3d4o_A 153 IHGANVAVLGLGRVGMSVARKFAALG--AKVKVGARESDLLARIAEM------------GMEPFHISKAAQE-L--RDVD 215 (293)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHT------------TSEEEEGGGHHHH-T--TTCS
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhCC--CEEEEEECCHHHHHHHHHC------------CCeecChhhHHHH-h--cCCC
Confidence 3567999999985 555555555543 5999999998765444321 122221 111111 1 4589
Q ss_pred EEEECCCccchhHHHHHhcCCCcEEEEEec
Q psy10572 127 IIHVSPSYFTIPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 127 ~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~~ 156 (204)
+|+...+...+.+.....++++++++-...
T Consensus 216 vVi~~~p~~~i~~~~l~~mk~~~~lin~ar 245 (293)
T 3d4o_A 216 VCINTIPALVVTANVLAEMPSHTFVIDLAS 245 (293)
T ss_dssp EEEECCSSCCBCHHHHHHSCTTCEEEECSS
T ss_pred EEEECCChHHhCHHHHHhcCCCCEEEEecC
Confidence 999888776555677888999987765443
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=93.97 E-value=0.06 Score=44.45 Aligned_cols=76 Identities=11% Similarity=-0.009 Sum_probs=51.1
Q ss_pred CCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCC----------
Q psy10572 51 GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE---------- 120 (204)
Q Consensus 51 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---------- 120 (204)
..+++|+.||.|.++.-+.+.. - -.+.++|+++.+++.-+.+... .+...++.+|+.....
T Consensus 88 ~~~viDLFaG~GGlslG~~~aG-~-~~v~avE~d~~A~~ty~~N~~~-------~p~~~~~~~DI~~i~~~~~~~~~~~~ 158 (482)
T 3me5_A 88 AFRFIDLFAGIGGIRRGFESIG-G-QCVFTSEWNKHAVRTYKANHYC-------DPATHHFNEDIRDITLSHQEGVSDEA 158 (482)
T ss_dssp SEEEEEESCTTSHHHHHHHTTT-E-EEEEEECCCHHHHHHHHHHSCC-------CTTTCEEESCTHHHHCTTCTTSCHHH
T ss_pred cceEEEecCCccHHHHHHHHCC-C-EEEEEEeCCHHHHHHHHHhccc-------CCCcceeccchhhhhhccccccchhh
Confidence 4589999999999998887653 1 2588999999988877776522 1234455666542210
Q ss_pred -------CCCCeeEEEECCCcc
Q psy10572 121 -------REAPYDIIHVSPSYF 135 (204)
Q Consensus 121 -------~~~~~D~v~~~~~~~ 135 (204)
....+|+++..+++.
T Consensus 159 ~~~~i~~~~~~~Dvl~gGpPCQ 180 (482)
T 3me5_A 159 AAEHIRQHIPEHDVLLAGFPCQ 180 (482)
T ss_dssp HHHHHHHHSCCCSEEEEECCCC
T ss_pred HHhhhhhcCCCCCEEEecCCCc
Confidence 113589998776653
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=93.73 E-value=0.17 Score=39.69 Aligned_cols=90 Identities=10% Similarity=-0.065 Sum_probs=57.3
Q ss_pred CEEEEE-cCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCC---CC---CCCC
Q psy10572 52 ARILDI-GSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKH---GY---EREA 123 (204)
Q Consensus 52 ~~vLdi-G~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~---~~---~~~~ 123 (204)
.+||-. |+|. |..+..+++..+ ++|++++.++..++.+++.-. . .++..+-.. .. ....
T Consensus 166 ~~vli~gg~g~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~~~Ga---------~--~~~~~~~~~~~~~v~~~~~~~ 232 (349)
T 3pi7_A 166 KAFVMTAGASQLCKLIIGLAKEEG--FRPIVTVRRDEQIALLKDIGA---------A--HVLNEKAPDFEATLREVMKAE 232 (349)
T ss_dssp SEEEESSTTSHHHHHHHHHHHHHT--CEEEEEESCGGGHHHHHHHTC---------S--EEEETTSTTHHHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHcCC---------C--EEEECCcHHHHHHHHHHhcCC
Confidence 566643 5553 777777777764 599999999988888865321 1 112111000 00 0113
Q ss_pred CeeEEEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 124 PYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 124 ~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
.+|+|+........ +.+.+.|+++|++++.-
T Consensus 233 g~D~vid~~g~~~~-~~~~~~l~~~G~iv~~G 263 (349)
T 3pi7_A 233 QPRIFLDAVTGPLA-SAIFNAMPKRARWIIYG 263 (349)
T ss_dssp CCCEEEESSCHHHH-HHHHHHSCTTCEEEECC
T ss_pred CCcEEEECCCChhH-HHHHhhhcCCCEEEEEe
Confidence 69999887776544 78889999999998753
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=93.73 E-value=0.34 Score=37.22 Aligned_cols=91 Identities=13% Similarity=0.013 Sum_probs=56.8
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEE-ecCCCCCCCCCCee
Q psy10572 49 KPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVV-WNGKHGYEREAPYD 126 (204)
Q Consensus 49 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~D 126 (204)
-.+.+|+-+|+|. |......++.+ +++|+++|.++...+.+... ...... .+..+ .. ...|
T Consensus 155 l~g~~v~IiG~G~iG~~~a~~l~~~--G~~V~~~d~~~~~~~~~~~~------------g~~~~~~~~l~~-~l--~~aD 217 (300)
T 2rir_A 155 IHGSQVAVLGLGRTGMTIARTFAAL--GANVKVGARSSAHLARITEM------------GLVPFHTDELKE-HV--KDID 217 (300)
T ss_dssp STTSEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHT------------TCEEEEGGGHHH-HS--TTCS
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHC------------CCeEEchhhHHH-Hh--hCCC
Confidence 3567999999985 55555555544 35999999998655443221 122221 12111 11 4589
Q ss_pred EEEECCCccchhHHHHHhcCCCcEEEEEec
Q psy10572 127 IIHVSPSYFTIPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 127 ~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~~ 156 (204)
+|+...+..-+.+.....++++++++=...
T Consensus 218 vVi~~~p~~~i~~~~~~~mk~g~~lin~a~ 247 (300)
T 2rir_A 218 ICINTIPSMILNQTVLSSMTPKTLILDLAS 247 (300)
T ss_dssp EEEECCSSCCBCHHHHTTSCTTCEEEECSS
T ss_pred EEEECCChhhhCHHHHHhCCCCCEEEEEeC
Confidence 999988776555677888999887765443
|
| >1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A | Back alignment and structure |
|---|
Probab=93.65 E-value=0.088 Score=41.56 Aligned_cols=93 Identities=11% Similarity=0.018 Sum_probs=58.1
Q ss_pred CCCC-CEEEEEcC-CC-cHHHHHHHHHhCCCceEEEEEcCHHH----HHHHHHHhhhcCccccCccceEEEE------ec
Q psy10572 48 IKPG-ARILDIGS-GS-GYLTACLAYMAGPEGRVYGVEHVMEL----AESSIKNIDKGNSELLDQGRVQFVV------WN 114 (204)
Q Consensus 48 ~~~~-~~vLdiG~-G~-G~~~~~l~~~~~~~~~v~~vD~~~~~----~~~a~~~~~~~~~~~~~~~~~~~~~------~d 114 (204)
++++ .+||-.|+ |. |.++..+++..+ ++++++..++.. .+.+++. . .. .++. .+
T Consensus 164 ~~~g~~~VlV~Ga~G~vG~~aiqlak~~G--a~vi~~~~~~~~~~~~~~~~~~l-G--------a~--~vi~~~~~~~~~ 230 (364)
T 1gu7_A 164 LTPGKDWFIQNGGTSAVGKYASQIGKLLN--FNSISVIRDRPNLDEVVASLKEL-G--------AT--QVITEDQNNSRE 230 (364)
T ss_dssp CCTTTCEEEESCTTSHHHHHHHHHHHHHT--CEEEEEECCCTTHHHHHHHHHHH-T--------CS--EEEEHHHHHCGG
T ss_pred cCCCCcEEEECCCCcHHHHHHHHHHHHCC--CEEEEEecCccccHHHHHHHHhc-C--------Ce--EEEecCccchHH
Confidence 6788 99999997 54 888888888764 477777644432 3344321 1 11 1111 11
Q ss_pred CCCCC---C--CCCCeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 115 GKHGY---E--REAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 115 ~~~~~---~--~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
+.+.. . ....+|+|+-..+..... .+.++|+++|++++.
T Consensus 231 ~~~~i~~~t~~~~~g~Dvvid~~G~~~~~-~~~~~l~~~G~~v~~ 274 (364)
T 1gu7_A 231 FGPTIKEWIKQSGGEAKLALNCVGGKSST-GIARKLNNNGLMLTY 274 (364)
T ss_dssp GHHHHHHHHHHHTCCEEEEEESSCHHHHH-HHHHTSCTTCEEEEC
T ss_pred HHHHHHHHhhccCCCceEEEECCCchhHH-HHHHHhccCCEEEEe
Confidence 11110 0 124699999887766555 778999999998774
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=93.63 E-value=0.25 Score=39.82 Aligned_cols=42 Identities=24% Similarity=0.301 Sum_probs=34.3
Q ss_pred CCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHH
Q psy10572 50 PGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIK 93 (204)
Q Consensus 50 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~ 93 (204)
++.+|+-+|+|. |..+..+++.++ ++|+++|.++..++.+..
T Consensus 189 ~~~kV~ViG~G~iG~~aa~~a~~lG--a~V~v~D~~~~~l~~~~~ 231 (405)
T 4dio_A 189 PAAKIFVMGAGVAGLQAIATARRLG--AVVSATDVRPAAKEQVAS 231 (405)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSTTHHHHHHH
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHH
Confidence 467999999996 777777777764 599999999998887765
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=93.55 E-value=0.21 Score=40.53 Aligned_cols=88 Identities=16% Similarity=0.095 Sum_probs=58.2
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCee
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYD 126 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D 126 (204)
.-.+.+|+-+|+|. |......++.++ ++|+++|.++.....+... ..++. ++.+. . ...|
T Consensus 217 ~L~GktV~ViG~G~IGk~vA~~Lra~G--a~Viv~D~dp~ra~~A~~~------------G~~v~--~Leea-l--~~AD 277 (435)
T 3gvp_A 217 MFGGKQVVVCGYGEVGKGCCAALKAMG--SIVYVTEIDPICALQACMD------------GFRLV--KLNEV-I--RQVD 277 (435)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHT------------TCEEC--CHHHH-T--TTCS
T ss_pred eecCCEEEEEeeCHHHHHHHHHHHHCC--CEEEEEeCChhhhHHHHHc------------CCEec--cHHHH-H--hcCC
Confidence 35788999999997 776666666653 5999999998655444321 12221 11111 1 3479
Q ss_pred EEEECCCccchh-HHHHHhcCCCcEEEEE
Q psy10572 127 IIHVSPSYFTIP-QKLLDQLVPGGRMVMP 154 (204)
Q Consensus 127 ~v~~~~~~~~~~-~~~~~~Lk~gG~l~~~ 154 (204)
+|+......+++ ......+|+|++++-.
T Consensus 278 IVi~atgt~~lI~~e~l~~MK~gailINv 306 (435)
T 3gvp_A 278 IVITCTGNKNVVTREHLDRMKNSCIVCNM 306 (435)
T ss_dssp EEEECSSCSCSBCHHHHHHSCTTEEEEEC
T ss_pred EEEECCCCcccCCHHHHHhcCCCcEEEEe
Confidence 998876656655 5889999999877653
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=93.39 E-value=0.51 Score=35.15 Aligned_cols=95 Identities=15% Similarity=0.114 Sum_probs=59.7
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHh-CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCC--------
Q psy10572 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE-------- 120 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-------- 120 (204)
.++++|-.|++. .++..+++.+ ..+++|+.++.++..++...+.+. .++.++..|..+...
T Consensus 7 ~gk~~lVTGas~-gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~---------~~~~~~~~Dv~~~~~v~~~~~~~ 76 (255)
T 4eso_A 7 QGKKAIVIGGTH-GMGLATVRRLVEGGAEVLLTGRNESNIARIREEFG---------PRVHALRSDIADLNEIAVLGAAA 76 (255)
T ss_dssp TTCEEEEETCSS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG---------GGEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCC-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC---------CcceEEEccCCCHHHHHHHHHHH
Confidence 456777666554 4555554443 234699999999887766655432 367888888764210
Q ss_pred --CCCCeeEEEECCCccc-------------------------hhHHHHHhcCCCcEEEEE
Q psy10572 121 --REAPYDIIHVSPSYFT-------------------------IPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 121 --~~~~~D~v~~~~~~~~-------------------------~~~~~~~~Lk~gG~l~~~ 154 (204)
..+..|+++.++.... +.+.+...++++|.++..
T Consensus 77 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~i 137 (255)
T 4eso_A 77 GQTLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFT 137 (255)
T ss_dssp HHHHSSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred HHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEE
Confidence 1147999998876521 124555667778887664
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=93.35 E-value=0.34 Score=34.07 Aligned_cols=94 Identities=12% Similarity=0.005 Sum_probs=54.2
Q ss_pred CCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC----CC-CCCC
Q psy10572 51 GARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG----YE-REAP 124 (204)
Q Consensus 51 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~-~~~~ 124 (204)
+.+|+-+|+|. |......+... .+..|+++|.++..++.++.. .+.++.+|.... .. .-..
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~-~g~~V~vid~~~~~~~~~~~~------------g~~~~~gd~~~~~~l~~~~~~~~ 105 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRAR-YGKISLGIEIREEAAQQHRSE------------GRNVISGDATDPDFWERILDTGH 105 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHH-HCSCEEEEESCHHHHHHHHHT------------TCCEEECCTTCHHHHHTBCSCCC
T ss_pred CCcEEEECCCHHHHHHHHHHHhc-cCCeEEEEECCHHHHHHHHHC------------CCCEEEcCCCCHHHHHhccCCCC
Confidence 45888898864 43332222221 034899999999887766432 244566664321 01 1246
Q ss_pred eeEEEECCCccchh---HHHHHhcCCCcEEEEEecC
Q psy10572 125 YDIIHVSPSYFTIP---QKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 125 ~D~v~~~~~~~~~~---~~~~~~Lk~gG~l~~~~~~ 157 (204)
+|+|+...+..... -...+.+.|++.+++...+
T Consensus 106 ad~vi~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~ 141 (183)
T 3c85_A 106 VKLVLLAMPHHQGNQTALEQLQRRNYKGQIAAIAEY 141 (183)
T ss_dssp CCEEEECCSSHHHHHHHHHHHHHTTCCSEEEEEESS
T ss_pred CCEEEEeCCChHHHHHHHHHHHHHCCCCEEEEEECC
Confidence 89998866554322 2344556777787775543
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A | Back alignment and structure |
|---|
Probab=93.22 E-value=0.54 Score=36.91 Aligned_cols=94 Identities=19% Similarity=0.180 Sum_probs=56.3
Q ss_pred cCCCCCEEEEEcC-CC-cHHHHHHHHHhCCCceEEEE-EcCHH---HHHHHHHHhhhcCccccCccceEEEEe------c
Q psy10572 47 KIKPGARILDIGS-GS-GYLTACLAYMAGPEGRVYGV-EHVME---LAESSIKNIDKGNSELLDQGRVQFVVW------N 114 (204)
Q Consensus 47 ~~~~~~~vLdiG~-G~-G~~~~~l~~~~~~~~~v~~v-D~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~------d 114 (204)
.+.++.+||-.|+ |. |.++..+++..+ ++++++ +.++. ..+.++..- ... ++.. +
T Consensus 164 ~~~~g~~VlV~Ga~G~vG~~aiqlak~~G--a~vi~~~~~~~~~~~~~~~~~~lG---------a~~--vi~~~~~~~~~ 230 (357)
T 1zsy_A 164 QLQPGDSVIQNASNSGVGQAVIQIAAALG--LRTINVVRDRPDIQKLSDRLKSLG---------AEH--VITEEELRRPE 230 (357)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHHT--CEEEEEECCCSCHHHHHHHHHHTT---------CSE--EEEHHHHHSGG
T ss_pred ccCCCCEEEEeCCcCHHHHHHHHHHHHcC--CEEEEEecCccchHHHHHHHHhcC---------CcE--EEecCcchHHH
Confidence 3678999999997 53 888888998864 455554 44332 344444321 111 1111 1
Q ss_pred CCCCCCCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 115 GKHGYEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 115 ~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
..........+|+|+-..+.... ....++|+++|++++.
T Consensus 231 ~~~~~~~~~~~Dvvid~~g~~~~-~~~~~~l~~~G~iv~~ 269 (357)
T 1zsy_A 231 MKNFFKDMPQPRLALNCVGGKSS-TELLRQLARGGTMVTY 269 (357)
T ss_dssp GGGTTSSSCCCSEEEESSCHHHH-HHHHTTSCTTCEEEEC
T ss_pred HHHHHhCCCCceEEEECCCcHHH-HHHHHhhCCCCEEEEE
Confidence 11111111249999887765444 5688999999999874
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=93.01 E-value=1.3 Score=32.92 Aligned_cols=101 Identities=11% Similarity=0.035 Sum_probs=60.7
Q ss_pred CCCEEEEEcCCCc-HHHHHHHHHh-CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC-----C--
Q psy10572 50 PGARILDIGSGSG-YLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-----E-- 120 (204)
Q Consensus 50 ~~~~vLdiG~G~G-~~~~~l~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~-- 120 (204)
.++++|-.|++.+ .++..+++.+ ..+++|+.++.++...+.+.+...... ..++.++..|+.+.. .
T Consensus 6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~v~~~~~~ 80 (266)
T 3oig_A 6 EGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLD-----RNDSIILPCDVTNDAEIETCFAS 80 (266)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSS-----SCCCEEEECCCSSSHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcC-----CCCceEEeCCCCCHHHHHHHHHH
Confidence 4567887776622 2333343332 234589999988766665555544322 236888999976432 0
Q ss_pred ---CCCCeeEEEECCCccc-----------------------------hhHHHHHhcCCCcEEEEEe
Q psy10572 121 ---REAPYDIIHVSPSYFT-----------------------------IPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 121 ---~~~~~D~v~~~~~~~~-----------------------------~~~~~~~~Lk~gG~l~~~~ 155 (204)
..+.+|+++.++.... +.+.+...++++|.++...
T Consensus 81 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is 147 (266)
T 3oig_A 81 IKEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLT 147 (266)
T ss_dssp HHHHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEE
T ss_pred HHHHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEe
Confidence 0146899998875421 1245567778888887754
|
| >4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.01 E-value=0.037 Score=43.53 Aligned_cols=93 Identities=19% Similarity=0.118 Sum_probs=54.1
Q ss_pred CCCCCEEEEEcC-CC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEec--CCCCC--CC
Q psy10572 48 IKPGARILDIGS-GS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWN--GKHGY--ER 121 (204)
Q Consensus 48 ~~~~~~vLdiG~-G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d--~~~~~--~~ 121 (204)
++++.+||-.|+ |. |.++..+++.. ....|++++ ++...+.++ ... . .++..+ ..+.. ..
T Consensus 140 ~~~g~~VlV~Ga~G~vG~~a~qla~~~-g~~~V~~~~-~~~~~~~~~--~ga--------~--~~~~~~~~~~~~~~~~~ 205 (349)
T 4a27_A 140 LREGMSVLVHSAGGGVGQAVAQLCSTV-PNVTVFGTA-STFKHEAIK--DSV--------T--HLFDRNADYVQEVKRIS 205 (349)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHTTS-TTCEEEEEE-CGGGHHHHG--GGS--------S--EEEETTSCHHHHHHHHC
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHc-CCcEEEEeC-CHHHHHHHH--cCC--------c--EEEcCCccHHHHHHHhc
Confidence 678899999998 43 77777777765 245899888 555555543 111 1 112111 00000 11
Q ss_pred CCCeeEEEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 122 EAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 122 ~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
.+.+|+|+-......+ +.+.+.|+++|++++.-
T Consensus 206 ~~g~Dvv~d~~g~~~~-~~~~~~l~~~G~~v~~G 238 (349)
T 4a27_A 206 AEGVDIVLDCLCGDNT-GKGLSLLKPLGTYILYG 238 (349)
T ss_dssp TTCEEEEEEECC--------CTTEEEEEEEEEEC
T ss_pred CCCceEEEECCCchhH-HHHHHHhhcCCEEEEEC
Confidence 2479999877665544 78889999999998753
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=92.76 E-value=0.085 Score=41.18 Aligned_cols=53 Identities=15% Similarity=0.238 Sum_probs=40.0
Q ss_pred cceEEEEecCCCC--CCCCCCeeEEEECCCccc--------------------hhHHHHHhcCCCcEEEEEecCC
Q psy10572 106 GRVQFVVWNGKHG--YEREAPYDIIHVSPSYFT--------------------IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 106 ~~~~~~~~d~~~~--~~~~~~~D~v~~~~~~~~--------------------~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
....++++|.... ..+.+++|+|++++++.. .+..+.++|+|||.+++.+...
T Consensus 13 ~~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~ 87 (323)
T 1boo_A 13 SNGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGA 87 (323)
T ss_dssp SSEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred CCceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECCE
Confidence 4678889987532 234578999999998732 2367789999999999987654
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=92.65 E-value=1.2 Score=29.62 Aligned_cols=93 Identities=15% Similarity=0.051 Sum_probs=55.7
Q ss_pred CCEEEEEcCCCcHHHHHHHHHhC-CCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC----CCCCCe
Q psy10572 51 GARILDIGSGSGYLTACLAYMAG-PEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY----EREAPY 125 (204)
Q Consensus 51 ~~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~ 125 (204)
..+|+-+|+|. ++..+++.+. .+.+++++|.++..++.++.. ...++.+|..... .....+
T Consensus 6 ~~~v~I~G~G~--iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~------------~~~~~~gd~~~~~~l~~~~~~~~ 71 (141)
T 3llv_A 6 RYEYIVIGSEA--AGVGLVRELTAAGKKVLAVDKSKEKIELLEDE------------GFDAVIADPTDESFYRSLDLEGV 71 (141)
T ss_dssp CCSEEEECCSH--HHHHHHHHHHHTTCCEEEEESCHHHHHHHHHT------------TCEEEECCTTCHHHHHHSCCTTC
T ss_pred CCEEEEECCCH--HHHHHHHHHHHCCCeEEEEECCHHHHHHHHHC------------CCcEEECCCCCHHHHHhCCcccC
Confidence 35788899864 5544544431 235899999999887766532 3567778765321 122468
Q ss_pred eEEEECCCccch---hHHHHHhcCCCcEEEEEecCC
Q psy10572 126 DIIHVSPSYFTI---PQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 126 D~v~~~~~~~~~---~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
|.|+...+.... .....+.+. ...++....+.
T Consensus 72 d~vi~~~~~~~~n~~~~~~a~~~~-~~~iia~~~~~ 106 (141)
T 3llv_A 72 SAVLITGSDDEFNLKILKALRSVS-DVYAIVRVSSP 106 (141)
T ss_dssp SEEEECCSCHHHHHHHHHHHHHHC-CCCEEEEESCG
T ss_pred CEEEEecCCHHHHHHHHHHHHHhC-CceEEEEEcCh
Confidence 999887764332 233344455 56666655444
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=92.64 E-value=2.9 Score=32.63 Aligned_cols=101 Identities=15% Similarity=0.171 Sum_probs=63.5
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCcc----------------ccCccceEEEE
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSE----------------LLDQGRVQFVV 112 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~----------------~~~~~~~~~~~ 112 (204)
.+...|+.+|||.....-.+.... +...++-+|. |..++.-++.+...+.. .+..++..++.
T Consensus 96 ~~~~qVV~LGaGlDTr~~RL~~~~-~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~ 173 (334)
T 1rjd_A 96 NEKVQVVNLGCGSDLRMLPLLQMF-PHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAA 173 (334)
T ss_dssp CSSEEEEEETCTTCCTHHHHHHHC-TTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEE
T ss_pred CCCcEEEEeCCCCccHHHHhcCcC-CCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEe
Confidence 466899999999999888887754 4557777776 77777777766542100 00125788899
Q ss_pred ecCCCC-C--------CCCCCeeEEEECCCccc--------hhHHHHHhcCCCcEEE
Q psy10572 113 WNGKHG-Y--------EREAPYDIIHVSPSYFT--------IPQKLLDQLVPGGRMV 152 (204)
Q Consensus 113 ~d~~~~-~--------~~~~~~D~v~~~~~~~~--------~~~~~~~~Lk~gG~l~ 152 (204)
.|+.+. + .......++++-..+.. +++.+.... |+|.++
T Consensus 174 ~DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v 229 (334)
T 1rjd_A 174 CDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWI 229 (334)
T ss_dssp CCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEE
T ss_pred cCCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEE
Confidence 997752 1 12234566666666544 234444444 777765
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=92.59 E-value=0.61 Score=37.68 Aligned_cols=94 Identities=10% Similarity=0.063 Sum_probs=61.2
Q ss_pred CCEEEEEcCCCcHHHHHHHHHhC-CCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC----CCCCCe
Q psy10572 51 GARILDIGSGSGYLTACLAYMAG-PEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY----EREAPY 125 (204)
Q Consensus 51 ~~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~ 125 (204)
+.+|+-+|+|. ++..+++.+. .+..|+++|.++..++.++.. .+.++.+|..... ..-...
T Consensus 4 ~~~viIiG~Gr--~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~------------g~~vi~GDat~~~~L~~agi~~A 69 (413)
T 3l9w_A 4 GMRVIIAGFGR--FGQITGRLLLSSGVKMVVLDHDPDHIETLRKF------------GMKVFYGDATRMDLLESAGAAKA 69 (413)
T ss_dssp CCSEEEECCSH--HHHHHHHHHHHTTCCEEEEECCHHHHHHHHHT------------TCCCEESCTTCHHHHHHTTTTTC
T ss_pred CCeEEEECCCH--HHHHHHHHHHHCCCCEEEEECCHHHHHHHHhC------------CCeEEEcCCCCHHHHHhcCCCcc
Confidence 45788888864 4444444331 235899999999998887642 4567888876421 122568
Q ss_pred eEEEECCCccc---hhHHHHHhcCCCcEEEEEecCC
Q psy10572 126 DIIHVSPSYFT---IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 126 D~v~~~~~~~~---~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
|+|++..+... ......+.+.|+..+++...+.
T Consensus 70 ~~viv~~~~~~~n~~i~~~ar~~~p~~~Iiara~~~ 105 (413)
T 3l9w_A 70 EVLINAIDDPQTNLQLTEMVKEHFPHLQIIARARDV 105 (413)
T ss_dssp SEEEECCSSHHHHHHHHHHHHHHCTTCEEEEEESSH
T ss_pred CEEEECCCChHHHHHHHHHHHHhCCCCeEEEEECCH
Confidence 98888766544 2345556778888888766554
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=92.01 E-value=0.46 Score=38.79 Aligned_cols=88 Identities=16% Similarity=0.024 Sum_probs=58.3
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCee
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYD 126 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D 126 (204)
.-.+++|+-+|+|. |......++.++ ++|+++|.++.....+.. ..+++... .+ .. ...|
T Consensus 244 ~L~GKTVgVIG~G~IGr~vA~~lrafG--a~Viv~d~dp~~a~~A~~------------~G~~vv~L--eE-lL--~~AD 304 (464)
T 3n58_A 244 MMAGKVAVVCGYGDVGKGSAQSLAGAG--ARVKVTEVDPICALQAAM------------DGFEVVTL--DD-AA--STAD 304 (464)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSHHHHHHHHH------------TTCEECCH--HH-HG--GGCS
T ss_pred cccCCEEEEECcCHHHHHHHHHHHHCC--CEEEEEeCCcchhhHHHh------------cCceeccH--HH-HH--hhCC
Confidence 35788999999997 666666666653 699999999875444321 12222211 11 11 3479
Q ss_pred EEEECCCccchh-HHHHHhcCCCcEEEEE
Q psy10572 127 IIHVSPSYFTIP-QKLLDQLVPGGRMVMP 154 (204)
Q Consensus 127 ~v~~~~~~~~~~-~~~~~~Lk~gG~l~~~ 154 (204)
+|+......+++ ......+|+|++|+-+
T Consensus 305 IVv~atgt~~lI~~e~l~~MK~GAILINv 333 (464)
T 3n58_A 305 IVVTTTGNKDVITIDHMRKMKDMCIVGNI 333 (464)
T ss_dssp EEEECCSSSSSBCHHHHHHSCTTEEEEEC
T ss_pred EEEECCCCccccCHHHHhcCCCCeEEEEc
Confidence 888877666655 7888999999988653
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=92.01 E-value=0.67 Score=35.21 Aligned_cols=95 Identities=18% Similarity=0.175 Sum_probs=60.6
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHh-CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC---------
Q psy10572 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY--------- 119 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------- 119 (204)
.++.+|--|++.| ++..+++.+ ..+++|+.+|.+.+.++.+.+.+. .+...+..|..+..
T Consensus 28 ~gKvalVTGas~G-IG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~g---------~~~~~~~~Dv~~~~~v~~~~~~~ 97 (273)
T 4fgs_A 28 NAKIAVITGATSG-IGLAAAKRFVAEGARVFITGRRKDVLDAAIAEIG---------GGAVGIQADSANLAELDRLYEKV 97 (273)
T ss_dssp TTCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC---------TTCEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCcCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcC---------CCeEEEEecCCCHHHHHHHHHHH
Confidence 4667776666555 444444443 245699999999988776655432 35667788865321
Q ss_pred -CCCCCeeEEEECCCccc-------------------------hhHHHHHhcCCCcEEEEE
Q psy10572 120 -EREAPYDIIHVSPSYFT-------------------------IPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 120 -~~~~~~D~v~~~~~~~~-------------------------~~~~~~~~Lk~gG~l~~~ 154 (204)
..-++.|+++.|++... +.+.+...++.+|.++..
T Consensus 98 ~~~~G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IIni 158 (273)
T 4fgs_A 98 KAEAGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLT 158 (273)
T ss_dssp HHHHSCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEE
T ss_pred HHHcCCCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEE
Confidence 11267999999876521 125666788888887664
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=92.01 E-value=0.28 Score=39.17 Aligned_cols=90 Identities=21% Similarity=0.230 Sum_probs=57.8
Q ss_pred CCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEec----CCCC------
Q psy10572 50 PGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWN----GKHG------ 118 (204)
Q Consensus 50 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d----~~~~------ 118 (204)
++.+|+-+|+|. |..+...++.++ ++|+++|.++..++.+...- .+++..+ ....
T Consensus 183 ~~~kV~ViG~G~iG~~aa~~a~~lG--a~V~v~D~~~~~l~~~~~lG------------a~~~~l~~~~~~~~gya~~~~ 248 (381)
T 3p2y_A 183 KPASALVLGVGVAGLQALATAKRLG--AKTTGYDVRPEVAEQVRSVG------------AQWLDLGIDAAGEGGYARELS 248 (381)
T ss_dssp CCCEEEEESCSHHHHHHHHHHHHHT--CEEEEECSSGGGHHHHHHTT------------CEECCCC-------------C
T ss_pred CCCEEEEECchHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHcC------------CeEEeccccccccccchhhhh
Confidence 567999999996 777777777764 58999999998887776521 1111100 0000
Q ss_pred ---------CCC--CCCeeEEEECCCc-----cc-hhHHHHHhcCCCcEEEE
Q psy10572 119 ---------YER--EAPYDIIHVSPSY-----FT-IPQKLLDQLVPGGRMVM 153 (204)
Q Consensus 119 ---------~~~--~~~~D~v~~~~~~-----~~-~~~~~~~~Lk~gG~l~~ 153 (204)
... -...|+|+..... +. +.+...+.+|||+.++=
T Consensus 249 ~~~~~~~~~~l~e~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVD 300 (381)
T 3p2y_A 249 EAERAQQQQALEDAITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVD 300 (381)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEE
T ss_pred HHHHhhhHHHHHHHHhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEE
Confidence 000 1468999876322 22 44899999999887765
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=91.97 E-value=1.8 Score=32.52 Aligned_cols=98 Identities=9% Similarity=0.019 Sum_probs=59.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHh-CCCceEEEEEcC------------HHHHHHHHHHhhhcCccccCccceEEEEecCC
Q psy10572 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHV------------MELAESSIKNIDKGNSELLDQGRVQFVVWNGK 116 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~vD~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~ 116 (204)
.++++|-.|++. .++..+++.+ ..+++|+.+|.+ ...++.+...+... ..++.++..|+.
T Consensus 9 ~gk~vlVTGas~-gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~D~~ 81 (287)
T 3pxx_A 9 QDKVVLVTGGAR-GQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKT------GRKAYTAEVDVR 81 (287)
T ss_dssp TTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHT------TSCEEEEECCTT
T ss_pred CCCEEEEeCCCC-hHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhc------CCceEEEEccCC
Confidence 355777666554 4555555443 234689999987 55555555544432 247888888876
Q ss_pred CCC-----C-----CCCCeeEEEECCCccc-----------------------hhHHHHHhcCCCcEEEEE
Q psy10572 117 HGY-----E-----REAPYDIIHVSPSYFT-----------------------IPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 117 ~~~-----~-----~~~~~D~v~~~~~~~~-----------------------~~~~~~~~Lk~gG~l~~~ 154 (204)
+.. . ..+..|+++.++.... +.+.+...++.+|.++..
T Consensus 82 ~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~i 152 (287)
T 3pxx_A 82 DRAAVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITT 152 (287)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEe
Confidence 421 0 0147999999876421 124566777888887664
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=91.42 E-value=4 Score=31.52 Aligned_cols=104 Identities=8% Similarity=0.025 Sum_probs=67.0
Q ss_pred CCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC--------CCC
Q psy10572 51 GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY--------ERE 122 (204)
Q Consensus 51 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------~~~ 122 (204)
...|+++|||--.....+.. +....++=+| .|..++..++.+...+. ....+..++..|+.+.+ +..
T Consensus 103 ~~QvV~LGaGlDTra~Rl~~--~~~~~v~evD-~P~vi~~k~~lL~~~~~--~~~~~~~~v~~Dl~d~~~~~l~~~g~d~ 177 (310)
T 2uyo_A 103 IRQFVILASGLDSRAYRLDW--PTGTTVYEID-QPKVLAYKSTTLAEHGV--TPTADRREVPIDLRQDWPPALRSAGFDP 177 (310)
T ss_dssp CCEEEEETCTTCCHHHHSCC--CTTCEEEEEE-CHHHHHHHHHHHHHTTC--CCSSEEEEEECCTTSCHHHHHHHTTCCT
T ss_pred CCeEEEeCCCCCchhhhccC--CCCcEEEEcC-CHHHHHHHHHHHHhcCC--CCCCCeEEEecchHhhHHHHHHhccCCC
Confidence 35799999997666333321 1246888899 69999988888864221 12357888999977522 111
Q ss_pred CCeeEEEECCCccc--------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 123 APYDIIHVSPSYFT--------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 123 ~~~D~v~~~~~~~~--------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
...-++++-..+.. +++.+...+.||+.+++...+..
T Consensus 178 ~~Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~~~~~ 222 (310)
T 2uyo_A 178 SARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSPLH 222 (310)
T ss_dssp TSCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCCTT
T ss_pred CCCEEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEecCCC
Confidence 23345555555543 44566677789999999886654
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=91.22 E-value=2 Score=34.12 Aligned_cols=95 Identities=13% Similarity=0.148 Sum_probs=62.3
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEE
Q psy10572 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIH 129 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 129 (204)
.+.+||.++.+.|.++..++.. .++.+.-|-......+.|+..++ +...++++... .+. ....+|+|+
T Consensus 38 ~~~~~~~~~d~~gal~~~~~~~-----~~~~~~ds~~~~~~~~~n~~~~~---~~~~~~~~~~~--~~~--~~~~~~~v~ 105 (375)
T 4dcm_A 38 IRGPVLILNDAFGALSCALAEH-----KPYSIGDSYISELATRENLRLNG---IDESSVKFLDS--TAD--YPQQPGVVL 105 (375)
T ss_dssp CCSCEEEECCSSSHHHHHTGGG-----CCEEEESCHHHHHHHHHHHHHTT---CCGGGSEEEET--TSC--CCSSCSEEE
T ss_pred CCCCEEEECCCCCHHHHhhccC-----CceEEEhHHHHHHHHHHHHHHcC---CCccceEeccc--ccc--cccCCCEEE
Confidence 4568999999999999888653 33455435555566777777654 22234555433 222 235699988
Q ss_pred ECCCcc-----chhHHHHHhcCCCcEEEEEec
Q psy10572 130 VSPSYF-----TIPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 130 ~~~~~~-----~~~~~~~~~Lk~gG~l~~~~~ 156 (204)
...+-. ..+..+...|++|+.+++.-.
T Consensus 106 ~~lpk~~~~l~~~L~~l~~~l~~~~~i~~~g~ 137 (375)
T 4dcm_A 106 IKVPKTLALLEQQLRALRKVVTSDTRIIAGAK 137 (375)
T ss_dssp EECCSCHHHHHHHHHHHHTTCCTTSEEEEEEE
T ss_pred EEcCCCHHHHHHHHHHHHhhCCCCCEEEEEec
Confidence 766543 245788888999999976443
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=91.10 E-value=1.7 Score=32.26 Aligned_cols=79 Identities=16% Similarity=0.114 Sum_probs=50.3
Q ss_pred CCCEEEEEcC-CCcHHHHHHHHHh-CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC-----C--
Q psy10572 50 PGARILDIGS-GSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-----E-- 120 (204)
Q Consensus 50 ~~~~vLdiG~-G~G~~~~~l~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~-- 120 (204)
.++++|-.|+ |.|. +..+++.+ ..+.+|+.++.++..++.....+... ...++.++..|+.+.. .
T Consensus 21 ~~k~vlITGasg~GI-G~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~-----~~~~~~~~~~Dl~~~~~v~~~~~~ 94 (266)
T 3o38_A 21 KGKVVLVTAAAGTGI-GSTTARRALLEGADVVISDYHERRLGETRDQLADL-----GLGRVEAVVCDVTSTEAVDALITQ 94 (266)
T ss_dssp TTCEEEESSCSSSSH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT-----CSSCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCch-HHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhc-----CCCceEEEEeCCCCHHHHHHHHHH
Confidence 4567887776 4543 33333322 23468999999998887777666442 1357889999976421 0
Q ss_pred ---CCCCeeEEEECCCc
Q psy10572 121 ---REAPYDIIHVSPSY 134 (204)
Q Consensus 121 ---~~~~~D~v~~~~~~ 134 (204)
..+++|+++.++..
T Consensus 95 ~~~~~g~id~li~~Ag~ 111 (266)
T 3o38_A 95 TVEKAGRLDVLVNNAGL 111 (266)
T ss_dssp HHHHHSCCCEEEECCCC
T ss_pred HHHHhCCCcEEEECCCc
Confidence 01468999998765
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=91.05 E-value=0.32 Score=38.85 Aligned_cols=42 Identities=26% Similarity=0.289 Sum_probs=33.4
Q ss_pred CCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHH
Q psy10572 50 PGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIK 93 (204)
Q Consensus 50 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~ 93 (204)
++.+|+-+|+|. |..+..+++.++ ++|+++|.++...+.++.
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~G--a~V~~~d~~~~~~~~~~~ 213 (384)
T 1l7d_A 171 PPARVLVFGVGVAGLQAIATAKRLG--AVVMATDVRAATKEQVES 213 (384)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCSTTHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence 577999999996 777777777764 589999999887776654
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=91.04 E-value=1.3 Score=33.87 Aligned_cols=78 Identities=13% Similarity=0.021 Sum_probs=51.4
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHh-CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC-----C---
Q psy10572 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-----E--- 120 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~--- 120 (204)
.+++||-.|++. .++..+++.+ ..+.+|+.++.++..++.+.+.+... ..++.++..|+.+.. .
T Consensus 30 ~gk~vlVTGas~-gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~------~~~~~~~~~Dv~d~~~v~~~~~~~ 102 (301)
T 3tjr_A 30 DGRAAVVTGGAS-GIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQ------GFDAHGVVCDVRHLDEMVRLADEA 102 (301)
T ss_dssp TTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT------TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc------CCceEEEEccCCCHHHHHHHHHHH
Confidence 456778666664 4555554443 23468999999998888777666542 246888888876421 0
Q ss_pred --CCCCeeEEEECCCc
Q psy10572 121 --REAPYDIIHVSPSY 134 (204)
Q Consensus 121 --~~~~~D~v~~~~~~ 134 (204)
..+..|+++.+++.
T Consensus 103 ~~~~g~id~lvnnAg~ 118 (301)
T 3tjr_A 103 FRLLGGVDVVFSNAGI 118 (301)
T ss_dssp HHHHSSCSEEEECCCC
T ss_pred HHhCCCCCEEEECCCc
Confidence 01479999998764
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=90.95 E-value=0.22 Score=40.07 Aligned_cols=42 Identities=26% Similarity=0.340 Sum_probs=33.3
Q ss_pred CCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHH
Q psy10572 50 PGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIK 93 (204)
Q Consensus 50 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~ 93 (204)
++.+|+-+|+|. |..+..+++.++ ++|+++|.++...+.++.
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~G--a~V~v~D~~~~~~~~~~~ 213 (401)
T 1x13_A 171 PPAKVMVIGAGVAGLAAIGAANSLG--AIVRAFDTRPEVKEQVQS 213 (401)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCGGGHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHH
Confidence 467999999996 777777777764 589999999987777643
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=90.87 E-value=2.1 Score=28.92 Aligned_cols=98 Identities=6% Similarity=-0.005 Sum_probs=58.4
Q ss_pred CCEEEEEcCCCcHHHHHHHHHhC-CCceEEEEEcC-HHHHHHHHHHhhhcCccccCccceEEEEecCCCCC----CCCCC
Q psy10572 51 GARILDIGSGSGYLTACLAYMAG-PEGRVYGVEHV-MELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY----EREAP 124 (204)
Q Consensus 51 ~~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~vD~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~ 124 (204)
..+|+-+|+ |..+..+++.+. .+..++.+|.+ +..++....... ..+.++.+|..... ..-..
T Consensus 3 ~~~vlI~G~--G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~---------~~~~~i~gd~~~~~~l~~a~i~~ 71 (153)
T 1id1_A 3 KDHFIVCGH--SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLG---------DNADVIPGDSNDSSVLKKAGIDR 71 (153)
T ss_dssp CSCEEEECC--SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHC---------TTCEEEESCTTSHHHHHHHTTTT
T ss_pred CCcEEEECC--CHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhc---------CCCeEEEcCCCCHHHHHHcChhh
Confidence 456777876 555555555431 23589999997 454444433221 25778888865321 11246
Q ss_pred eeEEEECCCccc---hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 125 YDIIHVSPSYFT---IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 125 ~D~v~~~~~~~~---~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
.|.|++...... ......+.+.|...++....+..
T Consensus 72 ad~vi~~~~~d~~n~~~~~~a~~~~~~~~ii~~~~~~~ 109 (153)
T 1id1_A 72 CRAILALSDNDADNAFVVLSAKDMSSDVKTVLAVSDSK 109 (153)
T ss_dssp CSEEEECSSCHHHHHHHHHHHHHHTSSSCEEEECSSGG
T ss_pred CCEEEEecCChHHHHHHHHHHHHHCCCCEEEEEECCHH
Confidence 898888766544 22445566777778877665543
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=90.83 E-value=1.8 Score=32.47 Aligned_cols=78 Identities=17% Similarity=0.096 Sum_probs=51.1
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHh-CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC---------
Q psy10572 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY--------- 119 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------- 119 (204)
.++.+|--|+ ++.++..+++.+ ..+++|+..|.++..++...+.+...+ .++..+..|..+..
T Consensus 8 ~gKvalVTGa-s~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g------~~~~~~~~Dv~~~~~v~~~~~~~ 80 (255)
T 4g81_D 8 TGKTALVTGS-ARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKG------YDAHGVAFDVTDELAIEAAFSKL 80 (255)
T ss_dssp TTCEEEETTC-SSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTT------CCEEECCCCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC------CcEEEEEeeCCCHHHHHHHHHHH
Confidence 4556665554 455555555544 245699999999998887777665532 46777888866321
Q ss_pred -CCCCCeeEEEECCCc
Q psy10572 120 -EREAPYDIIHVSPSY 134 (204)
Q Consensus 120 -~~~~~~D~v~~~~~~ 134 (204)
...++.|+++.|++.
T Consensus 81 ~~~~G~iDiLVNNAG~ 96 (255)
T 4g81_D 81 DAEGIHVDILINNAGI 96 (255)
T ss_dssp HHTTCCCCEEEECCCC
T ss_pred HHHCCCCcEEEECCCC
Confidence 123679999998765
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=90.57 E-value=2.5 Score=32.00 Aligned_cols=98 Identities=10% Similarity=0.055 Sum_probs=57.8
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHh-CCCceEEEEEcCHH-HHHHHHHHhhhcCccccCccceEEEEecCCCCC-----C--
Q psy10572 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVME-LAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-----E-- 120 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~vD~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~-- 120 (204)
.++++|-.|++ |.++..+++.+ ..+++|+.++.+.. ..+......... ..++.++..|+.+.. .
T Consensus 46 ~gk~vlVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~~Dv~d~~~v~~~~~~ 118 (291)
T 3ijr_A 46 KGKNVLITGGD-SGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKE------GVKCVLLPGDLSDEQHCKDIVQE 118 (291)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTT------TCCEEEEESCTTSHHHHHHHHHH
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhc------CCcEEEEECCCCCHHHHHHHHHH
Confidence 45677766655 45555555543 23468999998765 333333333331 246888888876421 0
Q ss_pred ---CCCCeeEEEECCCccc--------------------------hhHHHHHhcCCCcEEEEE
Q psy10572 121 ---REAPYDIIHVSPSYFT--------------------------IPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 121 ---~~~~~D~v~~~~~~~~--------------------------~~~~~~~~Lk~gG~l~~~ 154 (204)
..+..|+++.++.... +.+.+...++.+|.++..
T Consensus 119 ~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~i 181 (291)
T 3ijr_A 119 TVRQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINT 181 (291)
T ss_dssp HHHHHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred HHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEE
Confidence 1146899998865311 124566777888887664
|
| >3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* | Back alignment and structure |
|---|
Probab=90.52 E-value=1.2 Score=40.13 Aligned_cols=45 Identities=24% Similarity=0.233 Sum_probs=35.4
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHh
Q psy10572 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNI 95 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~ 95 (204)
...+++|+.||.|.++.-+.+.. -.-.+.++|+++.+++.-+.|.
T Consensus 539 ~~l~~iDLFaG~GGlslGl~~AG-~~~vv~avEid~~A~~ty~~N~ 583 (1002)
T 3swr_A 539 PKLRTLDVFSGCGGLSEGFHQAG-ISDTLWAIEMWDPAAQAFRLNN 583 (1002)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHT-SEEEEEEECSSHHHHHHHHHHC
T ss_pred CCCeEEEeccCccHHHHHHHHCC-CCceEEEEECCHHHHHHHHHhC
Confidence 44589999999999998887754 1125789999999988777764
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=90.33 E-value=0.2 Score=34.31 Aligned_cols=98 Identities=15% Similarity=0.000 Sum_probs=53.5
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC--C--CCC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG--Y--ERE 122 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~--~--~~~ 122 (204)
..++.+|+-+|+|. |......+... +.+|+++|.++..++.++. . ....++.+|.... . ..-
T Consensus 16 ~~~~~~v~IiG~G~iG~~la~~L~~~--g~~V~vid~~~~~~~~~~~---~--------~g~~~~~~d~~~~~~l~~~~~ 82 (155)
T 2g1u_A 16 KQKSKYIVIFGCGRLGSLIANLASSS--GHSVVVVDKNEYAFHRLNS---E--------FSGFTVVGDAAEFETLKECGM 82 (155)
T ss_dssp -CCCCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCGGGGGGSCT---T--------CCSEEEESCTTSHHHHHTTTG
T ss_pred ccCCCcEEEECCCHHHHHHHHHHHhC--CCeEEEEECCHHHHHHHHh---c--------CCCcEEEecCCCHHHHHHcCc
Confidence 35677999999864 44333333332 3489999998875443321 1 1344555554321 0 112
Q ss_pred CCeeEEEECCCccchhHHH---HHhcCCCcEEEEEecCC
Q psy10572 123 APYDIIHVSPSYFTIPQKL---LDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 123 ~~~D~v~~~~~~~~~~~~~---~~~Lk~gG~l~~~~~~~ 158 (204)
..+|+|+...+.......+ .+.+.+...++....+.
T Consensus 83 ~~ad~Vi~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~ 121 (155)
T 2g1u_A 83 EKADMVFAFTNDDSTNFFISMNARYMFNVENVIARVYDP 121 (155)
T ss_dssp GGCSEEEECSSCHHHHHHHHHHHHHTSCCSEEEEECSSG
T ss_pred ccCCEEEEEeCCcHHHHHHHHHHHHHCCCCeEEEEECCH
Confidence 4589998887765544333 34445555666655443
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=89.86 E-value=4.8 Score=30.50 Aligned_cols=100 Identities=11% Similarity=0.045 Sum_probs=60.8
Q ss_pred CCCCEEEEEcCCCc-HHHHHHHHHh-CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC-----C-
Q psy10572 49 KPGARILDIGSGSG-YLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-----E- 120 (204)
Q Consensus 49 ~~~~~vLdiG~G~G-~~~~~l~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~- 120 (204)
-.++++|-.|++.| .++..+++.+ ..+++|+.++.++...+.+...... ..++.++..|+.+.. .
T Consensus 29 l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~Dv~d~~~v~~~~~ 101 (293)
T 3grk_A 29 LQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEE-------LGAFVAGHCDVADAASIDAVFE 101 (293)
T ss_dssp TTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHH-------HTCEEEEECCTTCHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHh-------cCCceEEECCCCCHHHHHHHHH
Confidence 35678888887643 2444444433 1345899999887655555444433 135778888876421 0
Q ss_pred ----CCCCeeEEEECCCccc-----------------------------hhHHHHHhcCCCcEEEEEe
Q psy10572 121 ----REAPYDIIHVSPSYFT-----------------------------IPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 121 ----~~~~~D~v~~~~~~~~-----------------------------~~~~~~~~Lk~gG~l~~~~ 155 (204)
..+..|+++.++.... +.+.+...++.+|.++...
T Consensus 102 ~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~is 169 (293)
T 3grk_A 102 TLEKKWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLT 169 (293)
T ss_dssp HHHHHTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred HHHHhcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEe
Confidence 1247999999876531 1245667778888887644
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=89.76 E-value=3.3 Score=30.12 Aligned_cols=95 Identities=7% Similarity=-0.174 Sum_probs=61.0
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC----CCCCCe
Q psy10572 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY----EREAPY 125 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~ 125 (204)
...+|+-+|+ |..+..+++.+...+.++++|.++..++.++ . ++.++.+|..+.. ..-...
T Consensus 8 ~~~~viI~G~--G~~G~~la~~L~~~g~v~vid~~~~~~~~~~----~---------~~~~i~gd~~~~~~l~~a~i~~a 72 (234)
T 2aef_A 8 KSRHVVICGW--SESTLECLRELRGSEVFVLAEDENVRKKVLR----S---------GANFVHGDPTRVSDLEKANVRGA 72 (234)
T ss_dssp --CEEEEESC--CHHHHHHHHHSTTSEEEEEESCGGGHHHHHH----T---------TCEEEESCTTCHHHHHHTTCTTC
T ss_pred CCCEEEEECC--ChHHHHHHHHHHhCCeEEEEECCHHHHHHHh----c---------CCeEEEcCCCCHHHHHhcCcchh
Confidence 4567888887 5777778777643223899999988776654 1 4678888865321 112468
Q ss_pred eEEEECCCccc---hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 126 DIIHVSPSYFT---IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 126 D~v~~~~~~~~---~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
|.|++..+... ......+.+.|+..++..+.+..
T Consensus 73 d~vi~~~~~d~~n~~~~~~a~~~~~~~~iia~~~~~~ 109 (234)
T 2aef_A 73 RAVIVDLESDSETIHCILGIRKIDESVRIIAEAERYE 109 (234)
T ss_dssp SEEEECCSCHHHHHHHHHHHHHHCSSSEEEEECSSGG
T ss_pred cEEEEcCCCcHHHHHHHHHHHHHCCCCeEEEEECCHh
Confidence 98888766543 23455566788877777665543
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
|---|
Probab=89.65 E-value=0.62 Score=37.83 Aligned_cols=86 Identities=15% Similarity=-0.021 Sum_probs=55.5
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 49 KPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 49 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
-.+.+|.-+|.|. |......++.++ ++|+++|.++.....+... ..++. +..+. . ...|+
T Consensus 209 L~GktVgIiG~G~IG~~vA~~Lka~G--a~Viv~D~~p~~a~~A~~~------------G~~~~--sL~ea-l--~~ADV 269 (436)
T 3h9u_A 209 IAGKTACVCGYGDVGKGCAAALRGFG--ARVVVTEVDPINALQAAME------------GYQVL--LVEDV-V--EEAHI 269 (436)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHT------------TCEEC--CHHHH-T--TTCSE
T ss_pred ccCCEEEEEeeCHHHHHHHHHHHHCC--CEEEEECCChhhhHHHHHh------------CCeec--CHHHH-H--hhCCE
Confidence 4578999999986 666666666553 6999999998765544321 12221 21111 1 34899
Q ss_pred EEECCCccchh-HHHHHhcCCCcEEEE
Q psy10572 128 IHVSPSYFTIP-QKLLDQLVPGGRMVM 153 (204)
Q Consensus 128 v~~~~~~~~~~-~~~~~~Lk~gG~l~~ 153 (204)
|+......+++ ......+|+|.+++-
T Consensus 270 Vilt~gt~~iI~~e~l~~MK~gAIVIN 296 (436)
T 3h9u_A 270 FVTTTGNDDIITSEHFPRMRDDAIVCN 296 (436)
T ss_dssp EEECSSCSCSBCTTTGGGCCTTEEEEE
T ss_pred EEECCCCcCccCHHHHhhcCCCcEEEE
Confidence 98877666654 477788898876654
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=89.58 E-value=2.9 Score=31.16 Aligned_cols=100 Identities=19% Similarity=0.155 Sum_probs=59.3
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHhC-CCceEEEEEc-CHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC-----C--
Q psy10572 50 PGARILDIGSGSGYLTACLAYMAG-PEGRVYGVEH-VMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-----E-- 120 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~vD~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~-- 120 (204)
.++++|-.|++ |.++..+++.+. .+++|+.++. +....+.....+... ..++.++..|+.+.. .
T Consensus 17 ~~k~~lVTGas-~gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~Dv~~~~~v~~~~~~ 89 (270)
T 3is3_A 17 DGKVALVTGSG-RGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKAL------GSDAIAIKADIRQVPEIVKLFDQ 89 (270)
T ss_dssp TTCEEEESCTT-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT------TCCEEEEECCTTSHHHHHHHHHH
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc------CCcEEEEEcCCCCHHHHHHHHHH
Confidence 35567755554 555555555432 3458888775 444555544444432 246888888876421 0
Q ss_pred ---CCCCeeEEEECCCccc-------------------------hhHHHHHhcCCCcEEEEEec
Q psy10572 121 ---REAPYDIIHVSPSYFT-------------------------IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 121 ---~~~~~D~v~~~~~~~~-------------------------~~~~~~~~Lk~gG~l~~~~~ 156 (204)
..+..|+++.++.... +.+.+...++++|.++....
T Consensus 90 ~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS 153 (270)
T 3is3_A 90 AVAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSS 153 (270)
T ss_dssp HHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred HHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 1146899998876421 22566678888888877544
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=89.43 E-value=1.4 Score=32.36 Aligned_cols=94 Identities=11% Similarity=0.012 Sum_probs=55.3
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 49 KPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 49 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
-.+.+||-+|+|. |..-...... .++.|+.++.+.. ......... .+++++..++..... ..+|+
T Consensus 29 L~gk~VLVVGgG~va~~ka~~Ll~--~GA~VtVvap~~~--~~l~~l~~~--------~~i~~i~~~~~~~dL--~~adL 94 (223)
T 3dfz_A 29 LKGRSVLVVGGGTIATRRIKGFLQ--EGAAITVVAPTVS--AEINEWEAK--------GQLRVKRKKVGEEDL--LNVFF 94 (223)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHGG--GCCCEEEECSSCC--HHHHHHHHT--------TSCEEECSCCCGGGS--SSCSE
T ss_pred cCCCEEEEECCCHHHHHHHHHHHH--CCCEEEEECCCCC--HHHHHHHHc--------CCcEEEECCCCHhHh--CCCCE
Confidence 4577999999985 3322222222 2357888865432 112221111 356777666544333 45999
Q ss_pred EEECCCccchhHHHHHhcCCCcEEEEEecC
Q psy10572 128 IHVSPSYFTIPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 128 v~~~~~~~~~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
|++......+-..+....+ -|+++-.+..
T Consensus 95 VIaAT~d~~~N~~I~~~ak-~gi~VNvvD~ 123 (223)
T 3dfz_A 95 IVVATNDQAVNKFVKQHIK-NDQLVNMASS 123 (223)
T ss_dssp EEECCCCTHHHHHHHHHSC-TTCEEEC---
T ss_pred EEECCCCHHHHHHHHHHHh-CCCEEEEeCC
Confidence 9999888888778887777 7887654443
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=89.32 E-value=1.5 Score=32.40 Aligned_cols=78 Identities=8% Similarity=-0.007 Sum_probs=49.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHhC--CCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC-----CC-
Q psy10572 50 PGARILDIGSGSGYLTACLAYMAG--PEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-----ER- 121 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~- 121 (204)
.+++|| |..|+|.++..+++.+. .+.+|+.++.++...+...+.+... ..++.++..|+.+.. ..
T Consensus 3 ~~k~vl-ITGasggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~------~~~~~~~~~Dl~~~~~~~~~~~~ 75 (276)
T 1wma_A 3 GIHVAL-VTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAE------GLSPRFHQLDIDDLQSIRALRDF 75 (276)
T ss_dssp CCCEEE-ESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHT------TCCCEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEE-EeCCCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhc------CCeeEEEECCCCCHHHHHHHHHH
Confidence 345666 44566777777766542 2468999999887766665555431 136788888866421 00
Q ss_pred ----CCCeeEEEECCCc
Q psy10572 122 ----EAPYDIIHVSPSY 134 (204)
Q Consensus 122 ----~~~~D~v~~~~~~ 134 (204)
.+.+|+++.++..
T Consensus 76 ~~~~~g~id~li~~Ag~ 92 (276)
T 1wma_A 76 LRKEYGGLDVLVNNAGI 92 (276)
T ss_dssp HHHHHSSEEEEEECCCC
T ss_pred HHHhcCCCCEEEECCcc
Confidence 1369999988654
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=89.01 E-value=4.2 Score=30.42 Aligned_cols=100 Identities=17% Similarity=0.128 Sum_probs=58.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHh-CCCceEEEEEcC-HHHHHHHHHHhhhcCccccCccceEEEEecCCCCC-----C-
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHV-MELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-----E- 120 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~vD~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~- 120 (204)
-.++++|-.|++. .++..+++.+ ..+++|+.++.. ....+.....+... ..++.++..|..+.. .
T Consensus 29 l~gk~~lVTGas~-GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~Dv~d~~~v~~~~~ 101 (271)
T 3v2g_A 29 LAGKTAFVTGGSR-GIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQA------GGRAVAIRADNRDAEAIEQAIR 101 (271)
T ss_dssp CTTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT------TCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhc------CCcEEEEECCCCCHHHHHHHHH
Confidence 3566777666654 4455554443 234588888654 34455444444332 246788888876421 0
Q ss_pred ----CCCCeeEEEECCCccc-------------------------hhHHHHHhcCCCcEEEEEe
Q psy10572 121 ----REAPYDIIHVSPSYFT-------------------------IPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 121 ----~~~~~D~v~~~~~~~~-------------------------~~~~~~~~Lk~gG~l~~~~ 155 (204)
..++.|+++.++.... +.+.+.+.++++|.++...
T Consensus 102 ~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~is 165 (271)
T 3v2g_A 102 ETVEALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIG 165 (271)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEEC
T ss_pred HHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 1147999999876421 2256667788888887653
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=89.00 E-value=2.4 Score=31.90 Aligned_cols=78 Identities=22% Similarity=0.104 Sum_probs=50.2
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHh-CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCC--------
Q psy10572 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE-------- 120 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-------- 120 (204)
.++++|-.|+ +|.++..+++.+ ..+++|+.++.++...+.....+... ..++.++..|..+...
T Consensus 32 ~gk~~lVTGa-s~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dv~~~~~~~~~~~~~ 104 (275)
T 4imr_A 32 RGRTALVTGS-SRGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIAS------GGTAQELAGDLSEAGAGTDLIERA 104 (275)
T ss_dssp TTCEEEETTC-SSHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHHT------TCCEEEEECCTTSTTHHHHHHHHH
T ss_pred CCCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc------CCeEEEEEecCCCHHHHHHHHHHH
Confidence 4567775554 555555555544 23468999999887776666655442 2468888888764321
Q ss_pred -CCCCeeEEEECCCc
Q psy10572 121 -REAPYDIIHVSPSY 134 (204)
Q Consensus 121 -~~~~~D~v~~~~~~ 134 (204)
..++.|+++.++..
T Consensus 105 ~~~g~iD~lvnnAg~ 119 (275)
T 4imr_A 105 EAIAPVDILVINASA 119 (275)
T ss_dssp HHHSCCCEEEECCCC
T ss_pred HHhCCCCEEEECCCC
Confidence 11479999998764
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=88.92 E-value=3.5 Score=31.78 Aligned_cols=91 Identities=19% Similarity=0.162 Sum_probs=52.6
Q ss_pred CEEEEEcCCC-cH-HHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEE
Q psy10572 52 ARILDIGSGS-GY-LTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIH 129 (204)
Q Consensus 52 ~~vLdiG~G~-G~-~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 129 (204)
.+|.-||+|. |. ++..+.+.. ...+|+++|.++..++.+.+.- -+.-...+..+.. -...|+|+
T Consensus 34 ~kI~IIG~G~mG~slA~~l~~~G-~~~~V~~~dr~~~~~~~a~~~G-----------~~~~~~~~~~~~~--~~~aDvVi 99 (314)
T 3ggo_A 34 QNVLIVGVGFMGGSFAKSLRRSG-FKGKIYGYDINPESISKAVDLG-----------IIDEGTTSIAKVE--DFSPDFVM 99 (314)
T ss_dssp SEEEEESCSHHHHHHHHHHHHTT-CCSEEEEECSCHHHHHHHHHTT-----------SCSEEESCTTGGG--GGCCSEEE
T ss_pred CEEEEEeeCHHHHHHHHHHHhCC-CCCEEEEEECCHHHHHHHHHCC-----------CcchhcCCHHHHh--hccCCEEE
Confidence 6899999885 33 334444432 2238999999998877765421 0101112222101 13589998
Q ss_pred ECCCccc---hhHHHHHhcCCCcEEEEEecC
Q psy10572 130 VSPSYFT---IPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 130 ~~~~~~~---~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
...+... +++++...++++.+++ .+.+
T Consensus 100 lavp~~~~~~vl~~l~~~l~~~~iv~-d~~S 129 (314)
T 3ggo_A 100 LSSPVRTFREIAKKLSYILSEDATVT-DQGS 129 (314)
T ss_dssp ECSCGGGHHHHHHHHHHHSCTTCEEE-ECCS
T ss_pred EeCCHHHHHHHHHHHhhccCCCcEEE-ECCC
Confidence 8776654 4467777788887654 4433
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=88.72 E-value=5.2 Score=29.65 Aligned_cols=80 Identities=8% Similarity=-0.027 Sum_probs=50.6
Q ss_pred CCCEEEEEcCCCc-HHHHHHHHHh-CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC--------
Q psy10572 50 PGARILDIGSGSG-YLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-------- 119 (204)
Q Consensus 50 ~~~~vLdiG~G~G-~~~~~l~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-------- 119 (204)
.++.+|--|++++ .++..+++.+ ..+++|+.++.++..++.+.+.+... ...++.++..|..+..
T Consensus 5 ~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~-----~~~~~~~~~~Dv~~~~~v~~~~~~ 79 (256)
T 4fs3_A 5 ENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQL-----NQPEAHLYQIDVQSDEEVINGFEQ 79 (256)
T ss_dssp TTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGG-----TCSSCEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc-----CCCcEEEEEccCCCHHHHHHHHHH
Confidence 4677887775431 2333343332 13469999999988888777766552 2346788888876321
Q ss_pred --CCCCCeeEEEECCCc
Q psy10572 120 --EREAPYDIIHVSPSY 134 (204)
Q Consensus 120 --~~~~~~D~v~~~~~~ 134 (204)
..-+..|+++.|...
T Consensus 80 ~~~~~G~iD~lvnnAg~ 96 (256)
T 4fs3_A 80 IGKDVGNIDGVYHSIAF 96 (256)
T ss_dssp HHHHHCCCSEEEECCCC
T ss_pred HHHHhCCCCEEEecccc
Confidence 112679999988654
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=88.58 E-value=2.9 Score=31.69 Aligned_cols=99 Identities=14% Similarity=0.033 Sum_probs=57.8
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHh-CCCceEEEEEcCH--HHHHHHHHHhhhcCccccCccceEEEEecCCCCC-----C-
Q psy10572 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVM--ELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-----E- 120 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~vD~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~- 120 (204)
.++++|-.|++ |.++..+++.+ ..+.+|+.++.+. ...+......... ..++.++..|+.+.. .
T Consensus 48 ~~k~vlVTGas-~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~Dv~d~~~v~~~~~ 120 (294)
T 3r3s_A 48 KDRKALVTGGD-SGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEEC------GRKAVLLPGDLSDESFARSLVH 120 (294)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHT------TCCEEECCCCTTSHHHHHHHHH
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHc------CCcEEEEEecCCCHHHHHHHHH
Confidence 45677766654 55555555543 2345888888763 3344444433332 246778888866421 0
Q ss_pred ----CCCCeeEEEECCCccc--------------------------hhHHHHHhcCCCcEEEEEe
Q psy10572 121 ----REAPYDIIHVSPSYFT--------------------------IPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 121 ----~~~~~D~v~~~~~~~~--------------------------~~~~~~~~Lk~gG~l~~~~ 155 (204)
..+..|+++.++.... +.+.+...++++|.++...
T Consensus 121 ~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~is 185 (294)
T 3r3s_A 121 KAREALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTS 185 (294)
T ss_dssp HHHHHHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEEC
T ss_pred HHHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEEC
Confidence 0147899998876421 1245667788888877643
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=88.08 E-value=5.9 Score=29.36 Aligned_cols=80 Identities=10% Similarity=-0.059 Sum_probs=50.1
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHh-CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC-----C---
Q psy10572 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-----E--- 120 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~--- 120 (204)
.++.+|-.|++. .++..+++.+ ..+++|+.++.++..++.+...+.... ...++.++..|..+.. .
T Consensus 7 ~~k~~lVTGas~-GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~----~~~~~~~~~~Dv~~~~~v~~~~~~~ 81 (265)
T 3lf2_A 7 SEAVAVVTGGSS-GIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRF----PGARLFASVCDVLDALQVRAFAEAC 81 (265)
T ss_dssp TTCEEEEETCSS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHS----TTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCC-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc----CCceEEEEeCCCCCHHHHHHHHHHH
Confidence 456777666655 4454454443 234689999999988777766654411 1235888888876421 0
Q ss_pred --CCCCeeEEEECCCc
Q psy10572 121 --REAPYDIIHVSPSY 134 (204)
Q Consensus 121 --~~~~~D~v~~~~~~ 134 (204)
..++.|+++.++..
T Consensus 82 ~~~~g~id~lvnnAg~ 97 (265)
T 3lf2_A 82 ERTLGCASILVNNAGQ 97 (265)
T ss_dssp HHHHCSCSEEEECCCC
T ss_pred HHHcCCCCEEEECCCC
Confidence 11478999998765
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=88.02 E-value=2.6 Score=26.55 Aligned_cols=88 Identities=13% Similarity=0.103 Sum_probs=49.8
Q ss_pred CCEEEEEcCCCcHHHHHHHHHhC-CC-ceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC---CCCCCe
Q psy10572 51 GARILDIGSGSGYLTACLAYMAG-PE-GRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY---EREAPY 125 (204)
Q Consensus 51 ~~~vLdiG~G~G~~~~~l~~~~~-~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~ 125 (204)
..+|+-+|+ |..+..+++.+. .+ .+++++|.++...+.... ..+.+...|..... ..-..+
T Consensus 5 ~~~v~I~G~--G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~------------~~~~~~~~d~~~~~~~~~~~~~~ 70 (118)
T 3ic5_A 5 RWNICVVGA--GKIGQMIAALLKTSSNYSVTVADHDLAALAVLNR------------MGVATKQVDAKDEAGLAKALGGF 70 (118)
T ss_dssp CEEEEEECC--SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHT------------TTCEEEECCTTCHHHHHHHTTTC
T ss_pred cCeEEEECC--CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHh------------CCCcEEEecCCCHHHHHHHHcCC
Confidence 468898998 555554444331 23 589999999887666541 24556666654311 001358
Q ss_pred eEEEECCCccchhHHHHHhcCCCcEEEE
Q psy10572 126 DIIHVSPSYFTIPQKLLDQLVPGGRMVM 153 (204)
Q Consensus 126 D~v~~~~~~~~~~~~~~~~Lk~gG~l~~ 153 (204)
|+|+...+.... ..+.......|.-++
T Consensus 71 d~vi~~~~~~~~-~~~~~~~~~~g~~~~ 97 (118)
T 3ic5_A 71 DAVISAAPFFLT-PIIAKAAKAAGAHYF 97 (118)
T ss_dssp SEEEECSCGGGH-HHHHHHHHHTTCEEE
T ss_pred CEEEECCCchhh-HHHHHHHHHhCCCEE
Confidence 999988865543 333333333343333
|
| >4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A* | Back alignment and structure |
|---|
Probab=87.79 E-value=2.3 Score=37.20 Aligned_cols=47 Identities=23% Similarity=0.164 Sum_probs=34.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhC---CCc-eEEEEEcCHHHHHHHHHHh
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAG---PEG-RVYGVEHVMELAESSIKNI 95 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~---~~~-~v~~vD~~~~~~~~a~~~~ 95 (204)
.+..+|||+-||.|+++.=+..... ... .+.++|.++.+++.-+.|.
T Consensus 210 ~k~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nh 260 (784)
T 4ft4_B 210 TRTATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNH 260 (784)
T ss_dssp CEEEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHC
T ss_pred CCCCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHC
Confidence 3446899999999999877765431 011 5789999999988887774
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=87.72 E-value=4.2 Score=30.83 Aligned_cols=99 Identities=13% Similarity=0.026 Sum_probs=60.2
Q ss_pred CCCEEEEEcCCC-cHHHHHHHHHh-CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC-----C--
Q psy10572 50 PGARILDIGSGS-GYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-----E-- 120 (204)
Q Consensus 50 ~~~~vLdiG~G~-G~~~~~l~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~-- 120 (204)
.++++|-.|++. ..++..+++.+ ..+++|+.++.++...+.+....... ..+.++..|+.+.. .
T Consensus 29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~-------~~~~~~~~Dv~d~~~v~~~~~~ 101 (296)
T 3k31_A 29 EGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESL-------GVKLTVPCDVSDAESVDNMFKV 101 (296)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHH-------TCCEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhc-------CCeEEEEcCCCCHHHHHHHHHH
Confidence 456788888754 24444444443 13468999999876655555444332 24677888866421 0
Q ss_pred ---CCCCeeEEEECCCccc-----------------------------hhHHHHHhcCCCcEEEEEe
Q psy10572 121 ---REAPYDIIHVSPSYFT-----------------------------IPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 121 ---~~~~~D~v~~~~~~~~-----------------------------~~~~~~~~Lk~gG~l~~~~ 155 (204)
..+..|+++.++.... +.+.+...++.+|.++...
T Consensus 102 ~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~is 168 (296)
T 3k31_A 102 LAEEWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLS 168 (296)
T ss_dssp HHHHHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEE
T ss_pred HHHHcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEE
Confidence 0147899999876531 1145556777788887744
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=87.63 E-value=3.5 Score=30.62 Aligned_cols=78 Identities=13% Similarity=-0.048 Sum_probs=46.1
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHhC-CCceEEEEEcCH---HHHHHHHHHhhhcCccccCccceEEEEecCCCCC-----C
Q psy10572 50 PGARILDIGSGSGYLTACLAYMAG-PEGRVYGVEHVM---ELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-----E 120 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~vD~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~ 120 (204)
.++.+|-.|++ |.++..+++.+. .+++|+.++.+. ..++.....+... ..++.++..|+.+.. .
T Consensus 10 ~~k~vlVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~------~~~~~~~~~Dv~d~~~v~~~~ 82 (262)
T 3ksu_A 10 KNKVIVIAGGI-KNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQ------GAKVALYQSDLSNEEEVAKLF 82 (262)
T ss_dssp TTCEEEEETCS-SHHHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTT------TCEEEEEECCCCSHHHHHHHH
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhc------CCcEEEEECCCCCHHHHHHHH
Confidence 45577755554 556666666653 346888887543 3444444433331 246888888876421 1
Q ss_pred -----CCCCeeEEEECCCc
Q psy10572 121 -----REAPYDIIHVSPSY 134 (204)
Q Consensus 121 -----~~~~~D~v~~~~~~ 134 (204)
..+..|+++.++..
T Consensus 83 ~~~~~~~g~iD~lvnnAg~ 101 (262)
T 3ksu_A 83 DFAEKEFGKVDIAINTVGK 101 (262)
T ss_dssp HHHHHHHCSEEEEEECCCC
T ss_pred HHHHHHcCCCCEEEECCCC
Confidence 11479999998764
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=87.47 E-value=3.8 Score=30.82 Aligned_cols=75 Identities=11% Similarity=0.009 Sum_probs=46.9
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHh-CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC-----C---
Q psy10572 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-----E--- 120 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~--- 120 (204)
.++.+|-.|++ |.++..+++.+ ..+++|+.++.++..++.....+ ..++.++..|+.+.. .
T Consensus 28 ~gk~vlVTGas-~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~---------~~~~~~~~~Dv~d~~~v~~~~~~~ 97 (277)
T 3gvc_A 28 AGKVAIVTGAG-AGIGLAVARRLADEGCHVLCADIDGDAADAAATKI---------GCGAAACRVDVSDEQQIIAMVDAC 97 (277)
T ss_dssp TTCEEEETTTT-STHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH---------CSSCEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc---------CCcceEEEecCCCHHHHHHHHHHH
Confidence 45567755554 44555554443 23469999999988776665443 135778888866421 0
Q ss_pred --CCCCeeEEEECCCc
Q psy10572 121 --REAPYDIIHVSPSY 134 (204)
Q Consensus 121 --~~~~~D~v~~~~~~ 134 (204)
..+..|+++.++..
T Consensus 98 ~~~~g~iD~lvnnAg~ 113 (277)
T 3gvc_A 98 VAAFGGVDKLVANAGV 113 (277)
T ss_dssp HHHHSSCCEEEECCCC
T ss_pred HHHcCCCCEEEECCCC
Confidence 11468999988765
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=87.39 E-value=3.2 Score=30.86 Aligned_cols=79 Identities=13% Similarity=0.050 Sum_probs=50.3
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHhC-CCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCC--------
Q psy10572 50 PGARILDIGSGSGYLTACLAYMAG-PEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE-------- 120 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-------- 120 (204)
.++++|-.|+ +|.++..+++.+. .+++|+.++.++..++.+...+.... ..++.++..|+.+...
T Consensus 19 ~~k~vlVTGa-s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~ 92 (266)
T 4egf_A 19 DGKRALITGA-TKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQF-----GTDVHTVAIDLAEPDAPAELARRA 92 (266)
T ss_dssp TTCEEEETTT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-----CCCEEEEECCTTSTTHHHHHHHHH
T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc-----CCcEEEEEecCCCHHHHHHHHHHH
Confidence 4556665554 5555555555442 34689999999888777666554311 2468889999765321
Q ss_pred --CCCCeeEEEECCCc
Q psy10572 121 --REAPYDIIHVSPSY 134 (204)
Q Consensus 121 --~~~~~D~v~~~~~~ 134 (204)
..+..|+++.++..
T Consensus 93 ~~~~g~id~lv~nAg~ 108 (266)
T 4egf_A 93 AEAFGGLDVLVNNAGI 108 (266)
T ss_dssp HHHHTSCSEEEEECCC
T ss_pred HHHcCCCCEEEECCCc
Confidence 01479999988764
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=87.35 E-value=2.9 Score=31.00 Aligned_cols=78 Identities=12% Similarity=-0.021 Sum_probs=46.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHh-CCCceEEEE-EcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC-----C--
Q psy10572 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGV-EHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-----E-- 120 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~v-D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~-- 120 (204)
.++++|-.|++. .++..+++.+ ..+++|+.+ +.+....+.....+... ..++.++..|+.+.. .
T Consensus 7 ~~k~vlVTGas~-GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~Dv~~~~~v~~~~~~ 79 (259)
T 3edm_A 7 TNRTIVVAGAGR-DIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKL------GRSALAIKADLTNAAEVEAAISA 79 (259)
T ss_dssp TTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHTT------TSCCEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc------CCceEEEEcCCCCHHHHHHHHHH
Confidence 456777666655 4555554443 134588887 66666666555555432 246788888876421 0
Q ss_pred ---CCCCeeEEEECCCc
Q psy10572 121 ---REAPYDIIHVSPSY 134 (204)
Q Consensus 121 ---~~~~~D~v~~~~~~ 134 (204)
..+..|+++.++..
T Consensus 80 ~~~~~g~id~lv~nAg~ 96 (259)
T 3edm_A 80 AADKFGEIHGLVHVAGG 96 (259)
T ss_dssp HHHHHCSEEEEEECCCC
T ss_pred HHHHhCCCCEEEECCCc
Confidence 01479999988753
|
| >3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=87.28 E-value=1.7 Score=30.07 Aligned_cols=95 Identities=16% Similarity=0.189 Sum_probs=62.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCC-----CC
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYER-----EA 123 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-----~~ 123 (204)
....-|||+|-|+|.-=-.+...+ |+..++++|..-.. +.. .-.+.-.++.+|+.+.... ..
T Consensus 39 ~~~GpVlElGLGNGRTydHLRe~~-P~R~I~vfDR~~~~----------hp~--~~P~~e~~ilGdi~~tL~~~~~r~g~ 105 (174)
T 3iht_A 39 GLSGPVYELGLGNGRTYHHLRQHV-QGREIYVFERAVAS----------HPD--STPPEAQLILGDIRETLPATLERFGA 105 (174)
T ss_dssp TCCSCEEEECCTTCHHHHHHHHHC-CSSCEEEEESSCCC----------CGG--GCCCGGGEEESCHHHHHHHHHHHHCS
T ss_pred CCCCceEEecCCCChhHHHHHHhC-CCCcEEEEEeeecc----------CCC--CCCchHheecccHHHHHHHHHHhcCC
Confidence 556789999999999999999998 78899999942211 000 0123345677776543221 24
Q ss_pred CeeEEEECCCccc----------hhHHHHHhcCCCcEEEEEec
Q psy10572 124 PYDIIHVSPSYFT----------IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 124 ~~D~v~~~~~~~~----------~~~~~~~~Lk~gG~l~~~~~ 156 (204)
+.-++..+.+... +...+..+|.|||+++-..+
T Consensus 106 ~a~LaHaD~G~g~~~~d~a~a~~lsplI~~~la~GGi~vS~~p 148 (174)
T 3iht_A 106 TASLVHADLGGHNREKNDRFARLISPLIEPHLAQGGLMVSSDR 148 (174)
T ss_dssp CEEEEEECCCCSCHHHHHHHHHHHHHHHGGGEEEEEEEEESSC
T ss_pred ceEEEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCc
Confidence 5666666665543 34566688999999877443
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=87.26 E-value=2.2 Score=31.55 Aligned_cols=78 Identities=18% Similarity=0.207 Sum_probs=50.8
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHh-CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC-----C---
Q psy10572 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-----E--- 120 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~--- 120 (204)
.++++|-.|++. .++..+++.+ ..+.+|+.++.++..++.....+... ..++.++..|+.+.. .
T Consensus 6 ~~k~vlVTGas~-GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dv~~~~~v~~~~~~~ 78 (252)
T 3h7a_A 6 RNATVAVIGAGD-YIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAA------GGRIVARSLDARNEDEVTAFLNAA 78 (252)
T ss_dssp CSCEEEEECCSS-HHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHT------TCEEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCeEEEEECcCCCHHHHHHHHHHH
Confidence 456777666655 4555554443 23468999999988877776666542 246888899976321 0
Q ss_pred -CCCCeeEEEECCCc
Q psy10572 121 -REAPYDIIHVSPSY 134 (204)
Q Consensus 121 -~~~~~D~v~~~~~~ 134 (204)
..+..|+++.+++.
T Consensus 79 ~~~g~id~lv~nAg~ 93 (252)
T 3h7a_A 79 DAHAPLEVTIFNVGA 93 (252)
T ss_dssp HHHSCEEEEEECCCC
T ss_pred HhhCCceEEEECCCc
Confidence 01479999998765
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=87.13 E-value=6.6 Score=28.53 Aligned_cols=74 Identities=12% Similarity=-0.026 Sum_probs=46.7
Q ss_pred CCEEEEEcCCCcHHHHHHHHHh-CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC-----C----
Q psy10572 51 GARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-----E---- 120 (204)
Q Consensus 51 ~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~---- 120 (204)
++++|-.|++ |.++..+++.+ ..+.+|+.++.++..++.....+. .++.++..|+.+.. .
T Consensus 3 ~k~vlVTGas-~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~---------~~~~~~~~D~~~~~~v~~~~~~~~ 72 (235)
T 3l6e_A 3 LGHIIVTGAG-SGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLLG---------NAVIGIVADLAHHEDVDVAFAAAV 72 (235)
T ss_dssp CCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG---------GGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc---------CCceEEECCCCCHHHHHHHHHHHH
Confidence 3466766655 45555555443 234699999999887776655442 25788888876421 0
Q ss_pred -CCCCeeEEEECCCc
Q psy10572 121 -REAPYDIIHVSPSY 134 (204)
Q Consensus 121 -~~~~~D~v~~~~~~ 134 (204)
..+..|+++.+++.
T Consensus 73 ~~~g~id~lvnnAg~ 87 (235)
T 3l6e_A 73 EWGGLPELVLHCAGT 87 (235)
T ss_dssp HHHCSCSEEEEECCC
T ss_pred HhcCCCcEEEECCCC
Confidence 11468999988765
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=87.03 E-value=4.4 Score=29.95 Aligned_cols=75 Identities=16% Similarity=0.048 Sum_probs=47.6
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHh-CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC-----C---
Q psy10572 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-----E--- 120 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~--- 120 (204)
.++++|-.|++ |.++..+++.+ ..+.+|+.++.++...+.....+. .++.++..|+.+.. .
T Consensus 7 ~~k~vlVTGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~---------~~~~~~~~D~~~~~~v~~~~~~~ 76 (259)
T 4e6p_A 7 EGKSALITGSA-RGIGRAFAEAYVREGATVAIADIDIERARQAAAEIG---------PAAYAVQMDVTRQDSIDAAIAAT 76 (259)
T ss_dssp TTCEEEEETCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC---------TTEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC---------CCceEEEeeCCCHHHHHHHHHHH
Confidence 45677766654 55555555543 234689999999887666554431 35778888876321 0
Q ss_pred --CCCCeeEEEECCCc
Q psy10572 121 --REAPYDIIHVSPSY 134 (204)
Q Consensus 121 --~~~~~D~v~~~~~~ 134 (204)
..+..|+++.++..
T Consensus 77 ~~~~g~id~lv~~Ag~ 92 (259)
T 4e6p_A 77 VEHAGGLDILVNNAAL 92 (259)
T ss_dssp HHHSSSCCEEEECCCC
T ss_pred HHHcCCCCEEEECCCc
Confidence 11479999998765
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=86.95 E-value=6.8 Score=28.77 Aligned_cols=79 Identities=11% Similarity=-0.019 Sum_probs=49.1
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHh-CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecC--CCCC-------
Q psy10572 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNG--KHGY------- 119 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~--~~~~------- 119 (204)
.++++|-.|++ |.++..+++.+ ..+++|+.++.++..++.....+.... ..++.++..|. .+..
T Consensus 11 ~~k~vlVTGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~ 84 (252)
T 3f1l_A 11 NDRIILVTGAS-DGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEET-----GRQPQWFILDLLTCTSENCQQLAQ 84 (252)
T ss_dssp TTCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-----SCCCEEEECCTTTCCHHHHHHHHH
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc-----CCCceEEEEecccCCHHHHHHHHH
Confidence 45677766654 55555555543 234689999999888777666554421 23677888886 3210
Q ss_pred ---CCCCCeeEEEECCCc
Q psy10572 120 ---EREAPYDIIHVSPSY 134 (204)
Q Consensus 120 ---~~~~~~D~v~~~~~~ 134 (204)
...++.|+++.++..
T Consensus 85 ~~~~~~g~id~lv~nAg~ 102 (252)
T 3f1l_A 85 RIAVNYPRLDGVLHNAGL 102 (252)
T ss_dssp HHHHHCSCCSEEEECCCC
T ss_pred HHHHhCCCCCEEEECCcc
Confidence 012479999998764
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=86.93 E-value=5.7 Score=29.49 Aligned_cols=80 Identities=20% Similarity=0.098 Sum_probs=49.1
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHh-CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC------CCC
Q psy10572 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY------ERE 122 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~~ 122 (204)
.++++|-.|+ +|.++..+++.+ ..+++|+.++.++..++.....+.... ....+.++..|..... ...
T Consensus 9 ~~k~~lVTGa-s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~----~~~~~~~~~~D~~~~~~~~~~~~~~ 83 (267)
T 3t4x_A 9 KGKTALVTGS-TAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQY----PDAILQPVVADLGTEQGCQDVIEKY 83 (267)
T ss_dssp TTCEEEETTC-SSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHC----TTCEEEEEECCTTSHHHHHHHHHHC
T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhC----CCceEEEEecCCCCHHHHHHHHHhc
Confidence 3556775554 555555555544 234699999999887776666554421 1235677778865321 112
Q ss_pred CCeeEEEECCCc
Q psy10572 123 APYDIIHVSPSY 134 (204)
Q Consensus 123 ~~~D~v~~~~~~ 134 (204)
++.|+++.++..
T Consensus 84 g~id~lv~nAg~ 95 (267)
T 3t4x_A 84 PKVDILINNLGI 95 (267)
T ss_dssp CCCSEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 479999998764
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=86.83 E-value=2.2 Score=28.53 Aligned_cols=88 Identities=20% Similarity=0.254 Sum_probs=48.8
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHhC-CCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEE
Q psy10572 50 PGARILDIGSGSGYLTACLAYMAG-PEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDII 128 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 128 (204)
.+.+|+-+|+| ..+..+++.+. .+.+++.+|.++...+...+.+. ......+-..... ...|+|
T Consensus 20 ~~~~v~iiG~G--~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~-----------~~~~~~~~~~~~~--~~~Div 84 (144)
T 3oj0_A 20 GGNKILLVGNG--MLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYE-----------YEYVLINDIDSLI--KNNDVI 84 (144)
T ss_dssp CCCEEEEECCS--HHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHT-----------CEEEECSCHHHHH--HTCSEE
T ss_pred cCCEEEEECCC--HHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhC-----------CceEeecCHHHHh--cCCCEE
Confidence 47899999985 45555555442 23468889999887665433321 1221111011111 348999
Q ss_pred EECCCccchhHHHHHhcCCCcEEEE
Q psy10572 129 HVSPSYFTIPQKLLDQLVPGGRMVM 153 (204)
Q Consensus 129 ~~~~~~~~~~~~~~~~Lk~gG~l~~ 153 (204)
+...+..+.... ...+++|+.++-
T Consensus 85 i~at~~~~~~~~-~~~l~~g~~vid 108 (144)
T 3oj0_A 85 ITATSSKTPIVE-ERSLMPGKLFID 108 (144)
T ss_dssp EECSCCSSCSBC-GGGCCTTCEEEE
T ss_pred EEeCCCCCcEee-HHHcCCCCEEEE
Confidence 887666542211 266788766654
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=86.79 E-value=0.34 Score=37.69 Aligned_cols=52 Identities=15% Similarity=0.133 Sum_probs=38.1
Q ss_pred ceEEE-EecCCCC--CCCCCCeeEEEECCCccc-----------------hhHHHHHhcCCCcEEEEEecCC
Q psy10572 107 RVQFV-VWNGKHG--YEREAPYDIIHVSPSYFT-----------------IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 107 ~~~~~-~~d~~~~--~~~~~~~D~v~~~~~~~~-----------------~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
...++ ++|.... ..+.+++|+|++++++.. .+..+.++|+|+|.+++.+...
T Consensus 38 ~~~l~i~gD~l~~L~~l~~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~~~~~ 109 (319)
T 1eg2_A 38 TRHVYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQ 109 (319)
T ss_dssp EEEEEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSC
T ss_pred cceEEECCcHHHHHHhCccCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEEcCcc
Confidence 45677 8887532 234568999999999742 2356789999999999987654
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=86.69 E-value=2.8 Score=31.40 Aligned_cols=78 Identities=15% Similarity=0.122 Sum_probs=52.0
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHh-CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC---------
Q psy10572 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY--------- 119 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------- 119 (204)
+++.+|--|++.| ++..+++.+ ..+++|+.+|.++..++...+.+...+ .++.++..|..+..
T Consensus 6 ~gKvalVTGas~G-IG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g------~~~~~~~~Dvt~~~~v~~~~~~~ 78 (254)
T 4fn4_A 6 KNKVVIVTGAGSG-IGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMG------KEVLGVKADVSKKKDVEEFVRRT 78 (254)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT------CCEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC------CcEEEEEccCCCHHHHHHHHHHH
Confidence 4566776665554 444444443 245699999999998888877776532 46888889976321
Q ss_pred -CCCCCeeEEEECCCc
Q psy10572 120 -EREAPYDIIHVSPSY 134 (204)
Q Consensus 120 -~~~~~~D~v~~~~~~ 134 (204)
..-++.|+++.|++.
T Consensus 79 ~~~~G~iDiLVNNAGi 94 (254)
T 4fn4_A 79 FETYSRIDVLCNNAGI 94 (254)
T ss_dssp HHHHSCCCEEEECCCC
T ss_pred HHHcCCCCEEEECCcc
Confidence 112679999998763
|
| >3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=86.62 E-value=0.52 Score=37.41 Aligned_cols=85 Identities=9% Similarity=-0.042 Sum_probs=53.1
Q ss_pred CCCCEEEEE--cCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEec---CCCCC---
Q psy10572 49 KPGARILDI--GSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWN---GKHGY--- 119 (204)
Q Consensus 49 ~~~~~vLdi--G~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d---~~~~~--- 119 (204)
.++.+||-+ |+|. |.++..+++..+ ++|++++.++..++.+++.-. .. ++... ..+..
T Consensus 169 ~~g~~vlV~gag~G~vG~~a~q~a~~~G--a~Vi~~~~~~~~~~~~~~lGa---------~~--~~~~~~~~~~~~v~~~ 235 (379)
T 3iup_A 169 LEGHSALVHTAAASNLGQMLNQICLKDG--IKLVNIVRKQEQADLLKAQGA---------VH--VCNAASPTFMQDLTEA 235 (379)
T ss_dssp HTTCSCEEESSTTSHHHHHHHHHHHHHT--CCEEEEESSHHHHHHHHHTTC---------SC--EEETTSTTHHHHHHHH
T ss_pred cCCCEEEEECCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHhCCC---------cE--EEeCCChHHHHHHHHH
Confidence 578889988 4443 666777777764 489999999998888875311 11 11111 00000
Q ss_pred CCCCCeeEEEECCCccchhHHHHHhcC
Q psy10572 120 EREAPYDIIHVSPSYFTIPQKLLDQLV 146 (204)
Q Consensus 120 ~~~~~~D~v~~~~~~~~~~~~~~~~Lk 146 (204)
.....+|+|+-........+.+.+.|+
T Consensus 236 t~~~g~d~v~d~~g~~~~~~~~~~~l~ 262 (379)
T 3iup_A 236 LVSTGATIAFDATGGGKLGGQILTCME 262 (379)
T ss_dssp HHHHCCCEEEESCEEESHHHHHHHHHH
T ss_pred hcCCCceEEEECCCchhhHHHHHHhcc
Confidence 011359999988777666666666663
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=86.53 E-value=6.2 Score=29.56 Aligned_cols=75 Identities=11% Similarity=0.002 Sum_probs=46.9
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHh-CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC-----C---
Q psy10572 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-----E--- 120 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~--- 120 (204)
.++++|-.|++ |.++..+++.+ ..+++|+.++.++..++...... ..++.++..|+.+.. .
T Consensus 26 ~~k~vlVTGas-~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~---------~~~~~~~~~Dv~d~~~v~~~~~~~ 95 (277)
T 4dqx_A 26 NQRVCIVTGGG-SGIGRATAELFAKNGAYVVVADVNEDAAVRVANEI---------GSKAFGVRVDVSSAKDAESMVEKT 95 (277)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH---------CTTEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---------CCceEEEEecCCCHHHHHHHHHHH
Confidence 45677766655 45555555543 23469999999987766554432 136778888866421 0
Q ss_pred --CCCCeeEEEECCCc
Q psy10572 121 --REAPYDIIHVSPSY 134 (204)
Q Consensus 121 --~~~~~D~v~~~~~~ 134 (204)
..++.|+++.++..
T Consensus 96 ~~~~g~iD~lv~nAg~ 111 (277)
T 4dqx_A 96 TAKWGRVDVLVNNAGF 111 (277)
T ss_dssp HHHHSCCCEEEECCCC
T ss_pred HHHcCCCCEEEECCCc
Confidence 01468999998764
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=85.89 E-value=4.5 Score=29.49 Aligned_cols=77 Identities=16% Similarity=0.022 Sum_probs=50.2
Q ss_pred CCEEEEEcCCCcHHHHHHHHHh-CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC----------
Q psy10572 51 GARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY---------- 119 (204)
Q Consensus 51 ~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~---------- 119 (204)
++++|-.| |+|.++..+++.+ ..+.+|+.++.++...+.....+... ..++.++..|+.+..
T Consensus 5 ~k~vlITG-as~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~~~ 77 (247)
T 3lyl_A 5 EKVALVTG-ASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEK------GFKARGLVLNISDIESIQNFFAEIK 77 (247)
T ss_dssp TCEEEESS-CSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHT------TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCceEEEEecCCCHHHHHHHHHHHH
Confidence 45667555 4555555555544 23468999999998877776666542 246888888876321
Q ss_pred CCCCCeeEEEECCCc
Q psy10572 120 EREAPYDIIHVSPSY 134 (204)
Q Consensus 120 ~~~~~~D~v~~~~~~ 134 (204)
...++.|+++.++..
T Consensus 78 ~~~~~id~li~~Ag~ 92 (247)
T 3lyl_A 78 AENLAIDILVNNAGI 92 (247)
T ss_dssp HTTCCCSEEEECCCC
T ss_pred HHcCCCCEEEECCCC
Confidence 112468999998765
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=85.86 E-value=6.5 Score=30.13 Aligned_cols=78 Identities=9% Similarity=0.003 Sum_probs=46.3
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHh-CCCceEEEEEcC------------HHHHHHHHHHhhhcCccccCccceEEEEecCC
Q psy10572 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHV------------MELAESSIKNIDKGNSELLDQGRVQFVVWNGK 116 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~vD~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~ 116 (204)
.++.+|-.|++ |.++..+++.+ ..+++|+.+|.+ ...++.....+... ..++.++..|+.
T Consensus 45 ~gk~~lVTGas-~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~Dv~ 117 (317)
T 3oec_A 45 QGKVAFITGAA-RGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQ------GRRIIARQADVR 117 (317)
T ss_dssp TTCEEEESSCS-SHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHT------TCCEEEEECCTT
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhc------CCeEEEEECCCC
Confidence 45566655554 55555555544 234689999876 45555444444332 246888888876
Q ss_pred CCC-----C-----CCCCeeEEEECCCc
Q psy10572 117 HGY-----E-----REAPYDIIHVSPSY 134 (204)
Q Consensus 117 ~~~-----~-----~~~~~D~v~~~~~~ 134 (204)
+.. . ..+.+|+++.++..
T Consensus 118 d~~~v~~~~~~~~~~~g~iD~lVnnAg~ 145 (317)
T 3oec_A 118 DLASLQAVVDEALAEFGHIDILVSNVGI 145 (317)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 421 0 11479999998764
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=85.71 E-value=4.1 Score=33.62 Aligned_cols=86 Identities=14% Similarity=0.004 Sum_probs=53.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHh-CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
-.+++++-+|+| ..+..+++.+ ..+++|+.+|.++.....+... ...+ .+..+ . ....|+
T Consensus 263 L~GKtVvVtGaG--gIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa~~------------g~dv--~~lee-~--~~~aDv 323 (488)
T 3ond_A 263 IAGKVAVVAGYG--DVGKGCAAALKQAGARVIVTEIDPICALQATME------------GLQV--LTLED-V--VSEADI 323 (488)
T ss_dssp CTTCEEEEECCS--HHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT------------TCEE--CCGGG-T--TTTCSE
T ss_pred ccCCEEEEECCC--HHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHh------------CCcc--CCHHH-H--HHhcCE
Confidence 467899999988 3333333332 1346999999998766555432 1111 12111 1 135898
Q ss_pred EEECCCccchh-HHHHHhcCCCcEEEE
Q psy10572 128 IHVSPSYFTIP-QKLLDQLVPGGRMVM 153 (204)
Q Consensus 128 v~~~~~~~~~~-~~~~~~Lk~gG~l~~ 153 (204)
++......+++ ......++++++++-
T Consensus 324 Vi~atG~~~vl~~e~l~~mk~gaiVvN 350 (488)
T 3ond_A 324 FVTTTGNKDIIMLDHMKKMKNNAIVCN 350 (488)
T ss_dssp EEECSSCSCSBCHHHHTTSCTTEEEEE
T ss_pred EEeCCCChhhhhHHHHHhcCCCeEEEE
Confidence 88877666655 558889999887754
|
| >3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A* | Back alignment and structure |
|---|
Probab=85.54 E-value=2.8 Score=38.99 Aligned_cols=45 Identities=24% Similarity=0.226 Sum_probs=35.2
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHh
Q psy10572 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNI 95 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~ 95 (204)
...+++|+.||.|.++.-+.+.. -.-.+.++|+++.+++.-+.|.
T Consensus 850 ~~l~viDLFsG~GGlslGfe~AG-~~~vv~avEid~~A~~ty~~N~ 894 (1330)
T 3av4_A 850 PKLRTLDVFSGCGGLSEGFHQAG-ISETLWAIEMWDPAAQAFRLNN 894 (1330)
T ss_dssp CCEEEEEETCTTSHHHHHHHHTT-SEEEEEEECCSHHHHHHHHHHC
T ss_pred CCceEEecccCccHHHHHHHHCC-CCceEEEEECCHHHHHHHHHhC
Confidence 45689999999999998877643 1125789999999988877764
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=85.53 E-value=7.6 Score=29.17 Aligned_cols=80 Identities=9% Similarity=-0.021 Sum_probs=52.2
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHh-CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC-CC-------
Q psy10572 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG-YE------- 120 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~------- 120 (204)
.+++||-.|+ +|.++..+++.+ ..+.+|+.++.+....+.+...+.... ..++.++..|+.+. ..
T Consensus 11 ~~k~vlITGa-s~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~~Dl~~~~~~v~~~~~~ 84 (311)
T 3o26_A 11 KRRCAVVTGG-NKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSN-----HENVVFHQLDVTDPIATMSSLADF 84 (311)
T ss_dssp -CCEEEESSC-SSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT-----CCSEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEecC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-----CCceEEEEccCCCcHHHHHHHHHH
Confidence 4556775555 455665565554 234699999999988777766665422 34788999997654 10
Q ss_pred ---CCCCeeEEEECCCcc
Q psy10572 121 ---REAPYDIIHVSPSYF 135 (204)
Q Consensus 121 ---~~~~~D~v~~~~~~~ 135 (204)
..+.+|+++.+++..
T Consensus 85 ~~~~~g~iD~lv~nAg~~ 102 (311)
T 3o26_A 85 IKTHFGKLDILVNNAGVA 102 (311)
T ss_dssp HHHHHSSCCEEEECCCCC
T ss_pred HHHhCCCCCEEEECCccc
Confidence 014799999998753
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=85.27 E-value=3 Score=32.78 Aligned_cols=72 Identities=14% Similarity=0.057 Sum_probs=43.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC--C-CCCCe
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY--E-REAPY 125 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~-~~~~~ 125 (204)
....+|+-+|| |..+..+++.+.....++..|.+...++.+++. ...+..|..+.. . --...
T Consensus 14 g~~mkilvlGa--G~vG~~~~~~L~~~~~v~~~~~~~~~~~~~~~~-------------~~~~~~d~~d~~~l~~~~~~~ 78 (365)
T 3abi_A 14 GRHMKVLILGA--GNIGRAIAWDLKDEFDVYIGDVNNENLEKVKEF-------------ATPLKVDASNFDKLVEVMKEF 78 (365)
T ss_dssp --CCEEEEECC--SHHHHHHHHHHTTTSEEEEEESCHHHHHHHTTT-------------SEEEECCTTCHHHHHHHHTTC
T ss_pred CCccEEEEECC--CHHHHHHHHHHhcCCCeEEEEcCHHHHHHHhcc-------------CCcEEEecCCHHHHHHHHhCC
Confidence 44568999998 555555666554456899999998877766432 333455543211 0 01458
Q ss_pred eEEEECCCcc
Q psy10572 126 DIIHVSPSYF 135 (204)
Q Consensus 126 D~v~~~~~~~ 135 (204)
|+|+...+..
T Consensus 79 DvVi~~~p~~ 88 (365)
T 3abi_A 79 ELVIGALPGF 88 (365)
T ss_dssp SEEEECCCGG
T ss_pred CEEEEecCCc
Confidence 9998876553
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=85.25 E-value=3 Score=30.85 Aligned_cols=78 Identities=13% Similarity=0.011 Sum_probs=47.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHhC-CCceEEEEEc-CHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC-----CC-
Q psy10572 50 PGARILDIGSGSGYLTACLAYMAG-PEGRVYGVEH-VMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-----ER- 121 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~vD~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~- 121 (204)
.+++||-.| |+|.++..+++.+. .+.+|+.++. ++...+.....+... ..++.++..|+.+.. ..
T Consensus 20 ~~k~vlItG-asggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~------~~~~~~~~~D~~~~~~~~~~~~~ 92 (274)
T 1ja9_A 20 AGKVALTTG-AGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKL------GAQGVAIQADISKPSEVVALFDK 92 (274)
T ss_dssp TTCEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT------TCCEEEEECCTTSHHHHHHHHHH
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhc------CCcEEEEEecCCCHHHHHHHHHH
Confidence 345777454 56777766666542 3458999988 766665554444331 246788888876421 10
Q ss_pred ----CCCeeEEEECCCc
Q psy10572 122 ----EAPYDIIHVSPSY 134 (204)
Q Consensus 122 ----~~~~D~v~~~~~~ 134 (204)
.+.+|+++.++..
T Consensus 93 ~~~~~~~~d~vi~~Ag~ 109 (274)
T 1ja9_A 93 AVSHFGGLDFVMSNSGM 109 (274)
T ss_dssp HHHHHSCEEEEECCCCC
T ss_pred HHHHcCCCCEEEECCCC
Confidence 1369999887654
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=85.19 E-value=5.9 Score=25.74 Aligned_cols=93 Identities=11% Similarity=0.045 Sum_probs=51.5
Q ss_pred CCEEEEEcCCCcHHHHHHHHHhC-CCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC----CCCCCe
Q psy10572 51 GARILDIGSGSGYLTACLAYMAG-PEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY----EREAPY 125 (204)
Q Consensus 51 ~~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~ 125 (204)
+.+|+-+|+| ..+..+++.+. .+.+++.+|.++..++..+... .+.++.+|..... .....+
T Consensus 4 ~m~i~IiG~G--~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~-----------~~~~~~~d~~~~~~l~~~~~~~~ 70 (140)
T 1lss_A 4 GMYIIIAGIG--RVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI-----------DALVINGDCTKIKTLEDAGIEDA 70 (140)
T ss_dssp -CEEEEECCS--HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-----------SSEEEESCTTSHHHHHHTTTTTC
T ss_pred CCEEEEECCC--HHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhc-----------CcEEEEcCCCCHHHHHHcCcccC
Confidence 3578888875 44444444331 2358999999988766554321 2445556543210 112468
Q ss_pred eEEEECCCccch---hHHHHHhcCCCcEEEEEecC
Q psy10572 126 DIIHVSPSYFTI---PQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 126 D~v~~~~~~~~~---~~~~~~~Lk~gG~l~~~~~~ 157 (204)
|+|+...+.... ...+.+.+.++ .+++...+
T Consensus 71 d~vi~~~~~~~~~~~~~~~~~~~~~~-~ii~~~~~ 104 (140)
T 1lss_A 71 DMYIAVTGKEEVNLMSSLLAKSYGIN-KTIARISE 104 (140)
T ss_dssp SEEEECCSCHHHHHHHHHHHHHTTCC-CEEEECSS
T ss_pred CEEEEeeCCchHHHHHHHHHHHcCCC-EEEEEecC
Confidence 999888665432 23445557775 55554433
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=85.18 E-value=5.4 Score=30.61 Aligned_cols=80 Identities=11% Similarity=0.066 Sum_probs=51.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHh-CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC-----C---
Q psy10572 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-----E--- 120 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~--- 120 (204)
.+++||-.|++. .++..+++.+ ..+.+|++++.++..++.+...+.... ...++.++..|+.+.. .
T Consensus 7 ~~k~vlVTGas~-gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~----~~~~~~~~~~Dl~~~~~v~~~~~~~ 81 (319)
T 3ioy_A 7 AGRTAFVTGGAN-GVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEG----SGPEVMGVQLDVASREGFKMAADEV 81 (319)
T ss_dssp TTCEEEEETTTS-THHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHT----CGGGEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEcCCch-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC----CCCeEEEEECCCCCHHHHHHHHHHH
Confidence 456777666654 4455554443 234699999999988877766655422 1237888999976421 0
Q ss_pred --CCCCeeEEEECCCc
Q psy10572 121 --REAPYDIIHVSPSY 134 (204)
Q Consensus 121 --~~~~~D~v~~~~~~ 134 (204)
..+..|+++.+++.
T Consensus 82 ~~~~g~id~lv~nAg~ 97 (319)
T 3ioy_A 82 EARFGPVSILCNNAGV 97 (319)
T ss_dssp HHHTCCEEEEEECCCC
T ss_pred HHhCCCCCEEEECCCc
Confidence 12478999998764
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=85.06 E-value=4.1 Score=31.51 Aligned_cols=94 Identities=7% Similarity=-0.137 Sum_probs=60.6
Q ss_pred CCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC----CCCCCee
Q psy10572 51 GARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY----EREAPYD 126 (204)
Q Consensus 51 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D 126 (204)
..+++-+|+ |..+..+++.+...+.++.+|.++..++ ++. .++.++.+|..+.. ..-...|
T Consensus 115 ~~~viI~G~--G~~g~~l~~~L~~~g~v~vid~~~~~~~-~~~------------~~~~~i~gd~~~~~~L~~a~i~~a~ 179 (336)
T 1lnq_A 115 SRHVVICGW--SESTLECLRELRGSEVFVLAEDENVRKK-VLR------------SGANFVHGDPTRVSDLEKANVRGAR 179 (336)
T ss_dssp -CEEEEESC--CHHHHHHHTTGGGSCEEEEESCGGGHHH-HHH------------TTCEEEESCTTSHHHHHHTCSTTEE
T ss_pred cCCEEEECC--cHHHHHHHHHHHhCCcEEEEeCChhhhh-HHh------------CCcEEEEeCCCCHHHHHhcChhhcc
Confidence 347887876 5677777776532223999999998887 543 25778999976421 1235689
Q ss_pred EEEECCCccc---hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 127 IIHVSPSYFT---IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 127 ~v~~~~~~~~---~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
.+++..+.+. ......+.+.|+..++....+..
T Consensus 180 ~vi~~~~~d~~n~~~~~~ar~~~~~~~iiar~~~~~ 215 (336)
T 1lnq_A 180 AVIVDLESDSETIHCILGIRKIDESVRIIAEAERYE 215 (336)
T ss_dssp EEEECCSSHHHHHHHHHHHHTTCTTSEEEEECSSGG
T ss_pred EEEEcCCccHHHHHHHHHHHHHCCCCeEEEEECCHH
Confidence 8888665443 22455567778877777665443
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=84.91 E-value=3.5 Score=30.77 Aligned_cols=99 Identities=13% Similarity=0.033 Sum_probs=56.6
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHhC-CCceEEEEE-cCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC-----C--
Q psy10572 50 PGARILDIGSGSGYLTACLAYMAG-PEGRVYGVE-HVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-----E-- 120 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~vD-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~-- 120 (204)
.++.+|-.|++. .++..+++.+. .+++++.++ .++...+.....+... ..++.++..|+.+.. .
T Consensus 26 ~~k~~lVTGas~-GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~Dl~~~~~v~~~~~~ 98 (267)
T 3u5t_A 26 TNKVAIVTGASR-GIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAA------GGKALTAQADVSDPAAVRRLFAT 98 (267)
T ss_dssp -CCEEEEESCSS-HHHHHHHHHHHHHTCEEEEEESSCSHHHHHHHHHHHHT------TCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc------CCeEEEEEcCCCCHHHHHHHHHH
Confidence 466777666655 44444444331 234777764 4555555554444432 246788888876421 0
Q ss_pred ---CCCCeeEEEECCCccc-------------------------hhHHHHHhcCCCcEEEEEe
Q psy10572 121 ---REAPYDIIHVSPSYFT-------------------------IPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 121 ---~~~~~D~v~~~~~~~~-------------------------~~~~~~~~Lk~gG~l~~~~ 155 (204)
..++.|+++.+++... +.+.+...++++|.++...
T Consensus 99 ~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~is 161 (267)
T 3u5t_A 99 AEEAFGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMS 161 (267)
T ss_dssp HHHHHSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 1147999999876521 1245667777788877644
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=84.80 E-value=4.4 Score=29.11 Aligned_cols=93 Identities=18% Similarity=0.141 Sum_probs=55.9
Q ss_pred EEEEEcCCCcHHHHHHHHHhC-CCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC----CCCCCeeE
Q psy10572 53 RILDIGSGSGYLTACLAYMAG-PEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY----EREAPYDI 127 (204)
Q Consensus 53 ~vLdiG~G~G~~~~~l~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~ 127 (204)
+|+-+|+ |..+..+++.+. .+..++.+|.++..++..... .+..++.+|..... ..-...|+
T Consensus 2 ~iiIiG~--G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~-----------~~~~~i~gd~~~~~~l~~a~i~~ad~ 68 (218)
T 3l4b_C 2 KVIIIGG--ETTAYYLARSMLSRKYGVVIINKDRELCEEFAKK-----------LKATIIHGDGSHKEILRDAEVSKNDV 68 (218)
T ss_dssp CEEEECC--HHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHH-----------SSSEEEESCTTSHHHHHHHTCCTTCE
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH-----------cCCeEEEcCCCCHHHHHhcCcccCCE
Confidence 4666776 556655555441 235899999999887765432 14567888866421 11246898
Q ss_pred EEECCCccch---hHHHHHhcCCCcEEEEEecCC
Q psy10572 128 IHVSPSYFTI---PQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 128 v~~~~~~~~~---~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
|++..+.... ...+.+.+.+...++..+.+.
T Consensus 69 vi~~~~~d~~n~~~~~~a~~~~~~~~iia~~~~~ 102 (218)
T 3l4b_C 69 VVILTPRDEVNLFIAQLVMKDFGVKRVVSLVNDP 102 (218)
T ss_dssp EEECCSCHHHHHHHHHHHHHTSCCCEEEECCCSG
T ss_pred EEEecCCcHHHHHHHHHHHHHcCCCeEEEEEeCc
Confidence 8887665542 234445556666766644433
|
| >3trk_A Nonstructural polyprotein; hydrolase; 2.40A {Chikungunya virus} | Back alignment and structure |
|---|
Probab=84.72 E-value=0.76 Score=34.70 Aligned_cols=37 Identities=19% Similarity=0.280 Sum_probs=27.7
Q ss_pred CCeeEEEECCCcc----c-------------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 123 APYDIIHVSPSYF----T-------------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 123 ~~~D~v~~~~~~~----~-------------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
+.||+|++|...+ | +-..+.++|+|||.+++.-++-.
T Consensus 210 grYDlVfvNv~TpyR~HHYQQCeDHA~~l~mL~~~al~~L~pGGtlv~~aYGyA 263 (324)
T 3trk_A 210 GRYDLVVINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGGSLLIRAYGYA 263 (324)
T ss_dssp CCEEEEEEECCCCCCSSHHHHHHHHHHHHHHHHHHGGGGEEEEEEEEEEECCCC
T ss_pred CceeEEEEecCCccccchHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEeeccc
Confidence 7899999987652 2 22567799999999999765443
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=84.24 E-value=6.6 Score=29.13 Aligned_cols=74 Identities=11% Similarity=0.045 Sum_probs=45.2
Q ss_pred CCEEEEEcCCCcHHHHHHHHHhC-CCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC-----C----
Q psy10572 51 GARILDIGSGSGYLTACLAYMAG-PEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-----E---- 120 (204)
Q Consensus 51 ~~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~---- 120 (204)
++++|-.|+ +|.++..+++.+. .+.+|+.++.++..++...+.+. .++.++..|+.+.. .
T Consensus 6 ~k~vlITGa-s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~---------~~~~~~~~D~~~~~~v~~~~~~~~ 75 (263)
T 2a4k_A 6 GKTILVTGA-ASGIGRAALDLFAREGASLVAVDREERLLAEAVAALE---------AEAIAVVADVSDPKAVEAVFAEAL 75 (263)
T ss_dssp TCEEEEEST-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCC---------SSEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc---------CceEEEEcCCCCHHHHHHHHHHHH
Confidence 456775655 4555555555441 34689999999876655443221 35778888866321 0
Q ss_pred -CCCCeeEEEECCCc
Q psy10572 121 -REAPYDIIHVSPSY 134 (204)
Q Consensus 121 -~~~~~D~v~~~~~~ 134 (204)
..+++|+++.++..
T Consensus 76 ~~~g~iD~lvnnAg~ 90 (263)
T 2a4k_A 76 EEFGRLHGVAHFAGV 90 (263)
T ss_dssp HHHSCCCEEEEGGGG
T ss_pred HHcCCCcEEEECCCC
Confidence 01468999988654
|
| >3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* | Back alignment and structure |
|---|
Probab=84.24 E-value=3.8 Score=31.98 Aligned_cols=92 Identities=12% Similarity=-0.008 Sum_probs=53.0
Q ss_pred CCEEEEEcCCC-cH-HHHHHHHHhCCCceEEEE-EcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 51 GARILDIGSGS-GY-LTACLAYMAGPEGRVYGV-EHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 51 ~~~vLdiG~G~-G~-~~~~l~~~~~~~~~v~~v-D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
..+|.-||||. |. ......... +..+++++ |.++...+.+.+.. ++... .+..+. ......|+
T Consensus 27 ~~rigiIG~G~~g~~~~~~~l~~~-~~~~l~av~d~~~~~~~~~a~~~-----------g~~~~-~~~~~l-l~~~~~D~ 92 (350)
T 3rc1_A 27 PIRVGVIGCADIAWRRALPALEAE-PLTEVTAIASRRWDRAKRFTERF-----------GGEPV-EGYPAL-LERDDVDA 92 (350)
T ss_dssp CEEEEEESCCHHHHHTHHHHHHHC-TTEEEEEEEESSHHHHHHHHHHH-----------CSEEE-ESHHHH-HTCTTCSE
T ss_pred ceEEEEEcCcHHHHHHHHHHHHhC-CCeEEEEEEcCCHHHHHHHHHHc-----------CCCCc-CCHHHH-hcCCCCCE
Confidence 46899999985 44 222223333 45677655 98887665544432 12222 443332 22346899
Q ss_pred EEECCCccchhHHHHHhcCCCcEEEEEec
Q psy10572 128 IHVSPSYFTIPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 128 v~~~~~~~~~~~~~~~~Lk~gG~l~~~~~ 156 (204)
|++..+.....+.+..+|+.|-.+++.-+
T Consensus 93 V~i~tp~~~h~~~~~~al~aGk~Vl~EKP 121 (350)
T 3rc1_A 93 VYVPLPAVLHAEWIDRALRAGKHVLAEKP 121 (350)
T ss_dssp EEECCCGGGHHHHHHHHHHTTCEEEEESS
T ss_pred EEECCCcHHHHHHHHHHHHCCCcEEEeCC
Confidence 98877776655666666666666655444
|
| >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=84.01 E-value=2.8 Score=32.52 Aligned_cols=92 Identities=14% Similarity=0.003 Sum_probs=52.2
Q ss_pred CCCEEEEEcCCC-cHHHHHHHH-HhCCCceEEE-EEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCee
Q psy10572 50 PGARILDIGSGS-GYLTACLAY-MAGPEGRVYG-VEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYD 126 (204)
Q Consensus 50 ~~~~vLdiG~G~-G~~~~~l~~-~~~~~~~v~~-vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D 126 (204)
...+|.-||||. |........ .. +..++++ +|.++...+.+.+.+ + .+ . ...|..+. ......|
T Consensus 7 ~~~~v~iiG~G~ig~~~~~~l~~~~-~~~~~vav~d~~~~~~~~~a~~~---g-----~~--~-~~~~~~~~-l~~~~~D 73 (346)
T 3cea_A 7 KPLRAAIIGLGRLGERHARHLVNKI-QGVKLVAACALDSNQLEWAKNEL---G-----VE--T-TYTNYKDM-IDTENID 73 (346)
T ss_dssp CCEEEEEECCSTTHHHHHHHHHHTC-SSEEEEEEECSCHHHHHHHHHTT---C-----CS--E-EESCHHHH-HTTSCCS
T ss_pred CcceEEEEcCCHHHHHHHHHHHhcC-CCcEEEEEecCCHHHHHHHHHHh---C-----CC--c-ccCCHHHH-hcCCCCC
Confidence 446899999986 443333333 33 4556655 599987765543321 1 11 1 12232221 2223589
Q ss_pred EEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 127 IIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 127 ~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
+|+...+.....+.+..+|+.|-.+++.
T Consensus 74 ~V~i~tp~~~h~~~~~~al~~G~~v~~e 101 (346)
T 3cea_A 74 AIFIVAPTPFHPEMTIYAMNAGLNVFCE 101 (346)
T ss_dssp EEEECSCGGGHHHHHHHHHHTTCEEEEC
T ss_pred EEEEeCChHhHHHHHHHHHHCCCEEEEc
Confidence 9988877766667777777776656553
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=83.74 E-value=8.2 Score=28.65 Aligned_cols=68 Identities=16% Similarity=0.228 Sum_probs=48.3
Q ss_pred CEEEEEcCCCcHHHHHHHHHhC-CCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEEE
Q psy10572 52 ARILDIGSGSGYLTACLAYMAG-PEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHV 130 (204)
Q Consensus 52 ~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 130 (204)
.+||-.|+ |.++..+++.+. .+.+|++++.++........ .+++++.+|..+.. ...+|+|+.
T Consensus 6 ~~ilVtGa--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~------------~~~~~~~~D~~d~~--~~~~d~vi~ 69 (286)
T 3ius_A 6 GTLLSFGH--GYTARVLSRALAPQGWRIIGTSRNPDQMEAIRA------------SGAEPLLWPGEEPS--LDGVTHLLI 69 (286)
T ss_dssp CEEEEETC--CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHH------------TTEEEEESSSSCCC--CTTCCEEEE
T ss_pred CcEEEECC--cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhh------------CCCeEEEecccccc--cCCCCEEEE
Confidence 58999994 888888877762 23589999988765433321 36888899977633 467899988
Q ss_pred CCCcc
Q psy10572 131 SPSYF 135 (204)
Q Consensus 131 ~~~~~ 135 (204)
.+...
T Consensus 70 ~a~~~ 74 (286)
T 3ius_A 70 STAPD 74 (286)
T ss_dssp CCCCB
T ss_pred CCCcc
Confidence 77543
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=83.64 E-value=4.1 Score=29.77 Aligned_cols=76 Identities=16% Similarity=0.083 Sum_probs=47.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhC-CCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC------CC
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAG-PEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY------ER 121 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~ 121 (204)
.++++||-.|+ +|.++..+++.+. .+.+|+.++.++..++.....+. .++.+...|..... ..
T Consensus 12 ~~~k~vlVTGa-s~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~---------~~~~~~~~D~~~~~~~~~~~~~ 81 (249)
T 3f9i_A 12 LTGKTSLITGA-SSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNALK---------DNYTIEVCNLANKEECSNLISK 81 (249)
T ss_dssp CTTCEEEETTT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC---------SSEEEEECCTTSHHHHHHHHHT
T ss_pred CCCCEEEEECC-CChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhc---------cCccEEEcCCCCHHHHHHHHHh
Confidence 45667775555 5555555555442 34689999999887766655432 36778888865321 11
Q ss_pred CCCeeEEEECCCc
Q psy10572 122 EAPYDIIHVSPSY 134 (204)
Q Consensus 122 ~~~~D~v~~~~~~ 134 (204)
.+..|+++.++..
T Consensus 82 ~~~id~li~~Ag~ 94 (249)
T 3f9i_A 82 TSNLDILVCNAGI 94 (249)
T ss_dssp CSCCSEEEECCC-
T ss_pred cCCCCEEEECCCC
Confidence 2469999988764
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=83.18 E-value=7.5 Score=29.18 Aligned_cols=78 Identities=18% Similarity=0.127 Sum_probs=46.3
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHh-CCCceEEEEEcCHH-------HHHHHHHHhhhcCccccCccceEEEEecCCCCC--
Q psy10572 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVME-------LAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-- 119 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~vD~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-- 119 (204)
.++.+|-.|++. .++..+++.+ ..+.+|+.++.+.. .++...+.+... ..++.++..|+.+..
T Consensus 8 ~~k~vlVTGas~-GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~Dv~~~~~v 80 (285)
T 3sc4_A 8 RGKTMFISGGSR-GIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEA------GGQALPIVGDIRDGDAV 80 (285)
T ss_dssp TTCEEEEESCSS-HHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHH------TSEEEEEECCTTSHHHH
T ss_pred CCCEEEEECCCC-HHHHHHHHHHHHCCCEEEEEECChhhhhhhhHHHHHHHHHHHhc------CCcEEEEECCCCCHHHH
Confidence 456777666654 4555555544 23468999998765 233333333321 246888888876421
Q ss_pred ---C-----CCCCeeEEEECCCc
Q psy10572 120 ---E-----REAPYDIIHVSPSY 134 (204)
Q Consensus 120 ---~-----~~~~~D~v~~~~~~ 134 (204)
. ..+..|+++.++..
T Consensus 81 ~~~~~~~~~~~g~id~lvnnAg~ 103 (285)
T 3sc4_A 81 AAAVAKTVEQFGGIDICVNNASA 103 (285)
T ss_dssp HHHHHHHHHHHSCCSEEEECCCC
T ss_pred HHHHHHHHHHcCCCCEEEECCCC
Confidence 0 11479999998765
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=83.17 E-value=4.8 Score=30.04 Aligned_cols=78 Identities=14% Similarity=0.037 Sum_probs=48.7
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHh-CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC-----C---
Q psy10572 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-----E--- 120 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~--- 120 (204)
.++++|-.|+ +|.++..+++.+ ..+++|+.++.++..++...+.+... ..++.++..|..+.. .
T Consensus 20 ~~k~vlVTGa-s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~~ 92 (273)
T 1ae1_A 20 KGTTALVTGG-SKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREK------GLNVEGSVCDLLSRTERDKLMQTV 92 (273)
T ss_dssp TTCEEEEESC-SSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT------TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEECC-cchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCceEEEECCCCCHHHHHHHHHHH
Confidence 3567776665 455555555543 23468999999987776655544331 236778888865321 0
Q ss_pred --CC-CCeeEEEECCCc
Q psy10572 121 --RE-APYDIIHVSPSY 134 (204)
Q Consensus 121 --~~-~~~D~v~~~~~~ 134 (204)
.. +..|+++.++..
T Consensus 93 ~~~~~g~id~lv~nAg~ 109 (273)
T 1ae1_A 93 AHVFDGKLNILVNNAGV 109 (273)
T ss_dssp HHHTTSCCCEEEECCCC
T ss_pred HHHcCCCCcEEEECCCC
Confidence 01 579999998764
|
| >1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 | Back alignment and structure |
|---|
Probab=83.05 E-value=4.1 Score=33.56 Aligned_cols=90 Identities=16% Similarity=0.027 Sum_probs=55.4
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 49 KPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 49 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
-.+.+|.-+|.|. |......++.++ ++|+++|.++.....+.. ..+.+ .+..+. . ...|+
T Consensus 255 l~GktVgIIG~G~IG~~vA~~l~~~G--~~Viv~d~~~~~~~~a~~------------~g~~~--~~l~el-l--~~aDi 315 (479)
T 1v8b_A 255 ISGKIVVICGYGDVGKGCASSMKGLG--ARVYITEIDPICAIQAVM------------EGFNV--VTLDEI-V--DKGDF 315 (479)
T ss_dssp CTTSEEEEECCSHHHHHHHHHHHHHT--CEEEEECSCHHHHHHHHT------------TTCEE--CCHHHH-T--TTCSE
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHhCc--CEEEEEeCChhhHHHHHH------------cCCEe--cCHHHH-H--hcCCE
Confidence 4678999999885 655555555543 699999999875433321 11222 121111 2 35899
Q ss_pred EEECCCccchh-HHHHHhcCCCcEEEEEecCC
Q psy10572 128 IHVSPSYFTIP-QKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 128 v~~~~~~~~~~-~~~~~~Lk~gG~l~~~~~~~ 158 (204)
|+......+++ ......+|||.+++= +...
T Consensus 316 Vi~~~~t~~lI~~~~l~~MK~gailiN-vgrg 346 (479)
T 1v8b_A 316 FITCTGNVDVIKLEHLLKMKNNAVVGN-IGHF 346 (479)
T ss_dssp EEECCSSSSSBCHHHHTTCCTTCEEEE-CSST
T ss_pred EEECCChhhhcCHHHHhhcCCCcEEEE-eCCC
Confidence 98886665654 577788999876654 4433
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=82.97 E-value=7.6 Score=29.04 Aligned_cols=99 Identities=18% Similarity=0.114 Sum_probs=56.8
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHhC-CCceEEEEEcCHHH-HHHHHHHhhhcCccccCccceEEEEecCCCCC-----CC-
Q psy10572 50 PGARILDIGSGSGYLTACLAYMAG-PEGRVYGVEHVMEL-AESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-----ER- 121 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~vD~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~- 121 (204)
.++++|-.| |+|.++..+++.+. .+.+|+.++.++.. .+...+.+... ..++.++..|..+.. ..
T Consensus 28 ~~k~vlVTG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~ 100 (283)
T 1g0o_A 28 EGKVALVTG-AGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKN------GSDAACVKANVGVVEDIVRMFEE 100 (283)
T ss_dssp TTCEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT------TCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHHh------CCCeEEEEcCCCCHHHHHHHHHH
Confidence 355666555 45666666655542 34589999877542 33333333321 236778888865321 00
Q ss_pred ----CCCeeEEEECCCccc-------------------------hhHHHHHhcCCCcEEEEEe
Q psy10572 122 ----EAPYDIIHVSPSYFT-------------------------IPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 122 ----~~~~D~v~~~~~~~~-------------------------~~~~~~~~Lk~gG~l~~~~ 155 (204)
.+..|+++.++.... +.+.+.+.++.+|.++...
T Consensus 101 ~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is 163 (283)
T 1g0o_A 101 AVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMG 163 (283)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred HHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 146899998876421 1245566677778877643
|
| >4gua_A Non-structural polyprotein; viral precursor polyprotein, protease, zinc-binding, hydrola; HET: MES; 2.85A {Sindbis virus} | Back alignment and structure |
|---|
Probab=82.89 E-value=1.3 Score=37.02 Aligned_cols=40 Identities=23% Similarity=0.353 Sum_probs=29.6
Q ss_pred CCCCCeeEEEECCCcc----c-------------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 120 EREAPYDIIHVSPSYF----T-------------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 120 ~~~~~~D~v~~~~~~~----~-------------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
++.++||+|++|...+ | +-..++++|+|||.+++..++-.
T Consensus 217 p~~~ryDlvfvn~~t~yr~HHyqQCeDHa~~l~ml~~~al~~l~pGGt~v~~~YGyA 273 (670)
T 4gua_A 217 PPQARYDLVFINIGTKYRNHHFQQCEDHAATLKTLSRSALNCLNPGGTLVVKSYGYA 273 (670)
T ss_dssp CCCCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCC
T ss_pred CCCCcccEEEEecCCCcccchHHHHHHHHHHHHHHhHHHHhhcCCCceEEEEEeecc
Confidence 4457899999996543 2 22577899999999998765443
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=82.78 E-value=3.1 Score=41.39 Aligned_cols=99 Identities=16% Similarity=0.093 Sum_probs=64.2
Q ss_pred CCCCCEEEEEcC-C-CcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEE-EEecCCC---CCCC
Q psy10572 48 IKPGARILDIGS-G-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQF-VVWNGKH---GYER 121 (204)
Q Consensus 48 ~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~d~~~---~~~~ 121 (204)
++++.+||-.|+ | .|..+..+++..+ ++|++++.++...+.+++.+...+ ...+-- ...++.+ ....
T Consensus 1665 l~~Ge~VLI~gaaGgVG~aAiqlAk~~G--a~Viat~~s~~k~~~l~~~~~~lg-----a~~v~~~~~~~~~~~i~~~t~ 1737 (2512)
T 2vz8_A 1665 MQPGESVLIHSGSGGVGQAAIAIALSRG--CRVFTTVGSAEKRAYLQARFPQLD-----ETCFANSRDTSFEQHVLRHTA 1737 (2512)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHCTTCC-----STTEEESSSSHHHHHHHHTTT
T ss_pred CCCCCEEEEEeCChHHHHHHHHHHHHcC--CEEEEEeCChhhhHHHHhhcCCCC-----ceEEecCCCHHHHHHHHHhcC
Confidence 678999998864 4 4888888888864 589999988888887776432111 111100 0011100 1112
Q ss_pred CCCeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 122 EAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 122 ~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
...+|+|+.... ....+...++|+++|+++..
T Consensus 1738 g~GvDvVld~~g-~~~l~~~l~~L~~~Gr~V~i 1769 (2512)
T 2vz8_A 1738 GKGVDLVLNSLA-EEKLQASVRCLAQHGRFLEI 1769 (2512)
T ss_dssp SCCEEEEEECCC-HHHHHHHHTTEEEEEEEEEC
T ss_pred CCCceEEEECCC-chHHHHHHHhcCCCcEEEEe
Confidence 246999987654 56778899999999998764
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=82.68 E-value=4.9 Score=29.67 Aligned_cols=78 Identities=12% Similarity=0.023 Sum_probs=48.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHh-CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC-----CC--
Q psy10572 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-----ER-- 121 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~-- 121 (204)
.++++|-.|+ +|.++..+++.+ ..+.+|+.++.++..++.....+... ..++.++..|+.+.. ..
T Consensus 8 ~~k~vlVTGa-s~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~~ 80 (260)
T 2ae2_A 8 EGCTALVTGG-SRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSK------GFKVEASVCDLSSRSERQELMNTV 80 (260)
T ss_dssp TTCEEEEESC-SSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT------TCEEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCcEEEEEcCCCCHHHHHHHHHHH
Confidence 3567775555 555665555544 23468999999988776655544331 236778888866421 10
Q ss_pred ---C-CCeeEEEECCCc
Q psy10572 122 ---E-APYDIIHVSPSY 134 (204)
Q Consensus 122 ---~-~~~D~v~~~~~~ 134 (204)
. +..|+++.++..
T Consensus 81 ~~~~~g~id~lv~~Ag~ 97 (260)
T 2ae2_A 81 ANHFHGKLNILVNNAGI 97 (260)
T ss_dssp HHHTTTCCCEEEECCCC
T ss_pred HHHcCCCCCEEEECCCC
Confidence 1 579999998764
|
| >3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} | Back alignment and structure |
|---|
Probab=82.59 E-value=0.97 Score=39.72 Aligned_cols=93 Identities=19% Similarity=0.231 Sum_probs=56.8
Q ss_pred CCCCCEEEEEcC-C-CcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEE-EEecCCC---CCCC
Q psy10572 48 IKPGARILDIGS-G-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQF-VVWNGKH---GYER 121 (204)
Q Consensus 48 ~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~d~~~---~~~~ 121 (204)
++++.+||-.|+ | .|..+..+++..+ ++|++++.++ ..+..+ + ....+-- ...++.+ ....
T Consensus 343 l~~G~~VLI~gaaGgvG~~aiqlAk~~G--a~V~~t~~~~-k~~~l~--l--------ga~~v~~~~~~~~~~~i~~~t~ 409 (795)
T 3slk_A 343 LRPGESLLVHSAAGGVGMAAIQLARHLG--AEVYATASED-KWQAVE--L--------SREHLASSRTCDFEQQFLGATG 409 (795)
T ss_dssp CCTTCCEEEESTTBHHHHHHHHHHHHTT--CCEEEECCGG-GGGGSC--S--------CGGGEECSSSSTHHHHHHHHSC
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHcC--CEEEEEeChH-Hhhhhh--c--------ChhheeecCChhHHHHHHHHcC
Confidence 578899999995 5 4888999999864 5899987443 111111 1 1111100 0001000 0112
Q ss_pred CCCeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 122 EAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 122 ~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
...+|+|+-...- ...+...++|+++|+++..
T Consensus 410 g~GvDvVld~~gg-~~~~~~l~~l~~~Gr~v~i 441 (795)
T 3slk_A 410 GRGVDVVLNSLAG-EFADASLRMLPRGGRFLEL 441 (795)
T ss_dssp SSCCSEEEECCCT-TTTHHHHTSCTTCEEEEEC
T ss_pred CCCeEEEEECCCc-HHHHHHHHHhcCCCEEEEe
Confidence 3469999876544 5668999999999999874
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* | Back alignment and structure |
|---|
Probab=82.50 E-value=7.8 Score=28.60 Aligned_cols=78 Identities=14% Similarity=-0.047 Sum_probs=47.9
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHhC-CCceEEEE-EcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC-----C--
Q psy10572 50 PGARILDIGSGSGYLTACLAYMAG-PEGRVYGV-EHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-----E-- 120 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~v-D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~-- 120 (204)
.++++|-.| |+|.++..+++.+. .+++++.+ +.++...+.....+... ..++.++..|+.+.. .
T Consensus 3 ~~k~vlVTG-as~gIG~aia~~l~~~G~~vv~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dv~~~~~v~~~~~~ 75 (258)
T 3oid_A 3 QNKCALVTG-SSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEKL------GVKVLVVKANVGQPAKIKEMFQQ 75 (258)
T ss_dssp CCCEEEESS-CSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTT------TCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEec-CCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc------CCcEEEEEcCCCCHHHHHHHHHH
Confidence 355666555 45566666655542 34577776 77877776666555442 246888888876421 0
Q ss_pred ---CCCCeeEEEECCCc
Q psy10572 121 ---REAPYDIIHVSPSY 134 (204)
Q Consensus 121 ---~~~~~D~v~~~~~~ 134 (204)
..++.|+++.++..
T Consensus 76 ~~~~~g~id~lv~nAg~ 92 (258)
T 3oid_A 76 IDETFGRLDVFVNNAAS 92 (258)
T ss_dssp HHHHHSCCCEEEECCCC
T ss_pred HHHHcCCCCEEEECCCC
Confidence 11468999998754
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=82.08 E-value=1.2 Score=33.40 Aligned_cols=48 Identities=17% Similarity=0.133 Sum_probs=33.1
Q ss_pred eEEEEecCCCC--CCCCCCeeEEEECCCccc--------------------hhHHHHHhcCCCcEEEEEe
Q psy10572 108 VQFVVWNGKHG--YEREAPYDIIHVSPSYFT--------------------IPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 108 ~~~~~~d~~~~--~~~~~~~D~v~~~~~~~~--------------------~~~~~~~~Lk~gG~l~~~~ 155 (204)
.+++++|.... ..+.+++|+|++++++.. ++..+.++|+|+|.+++..
T Consensus 5 ~~l~~gD~~~~l~~l~~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~~ 74 (260)
T 1g60_A 5 NKIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFN 74 (260)
T ss_dssp SSEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CeEEechHHHHHHhccccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 34566765421 123468999999988731 2356779999999999875
|
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} | Back alignment and structure |
|---|
Probab=80.83 E-value=7 Score=29.37 Aligned_cols=75 Identities=12% Similarity=0.058 Sum_probs=47.9
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHh-CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC------CCC
Q psy10572 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY------ERE 122 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~~ 122 (204)
.++++|-.|++ |.++..+++.+ ..+.+|+.++.++...+.+...+ ..++.++..|+.+.. ..-
T Consensus 15 ~gk~vlVTGas-~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~---------~~~~~~~~~Dl~d~~~v~~~~~~~ 84 (291)
T 3rd5_A 15 AQRTVVITGAN-SGLGAVTARELARRGATVIMAVRDTRKGEAAARTM---------AGQVEVRELDLQDLSSVRRFADGV 84 (291)
T ss_dssp TTCEEEEECCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTS---------SSEEEEEECCTTCHHHHHHHHHTC
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---------cCCeeEEEcCCCCHHHHHHHHHhc
Confidence 45677755554 55555555544 23469999999988766654432 246888888876321 111
Q ss_pred CCeeEEEECCCc
Q psy10572 123 APYDIIHVSPSY 134 (204)
Q Consensus 123 ~~~D~v~~~~~~ 134 (204)
+..|+++.++..
T Consensus 85 ~~iD~lv~nAg~ 96 (291)
T 3rd5_A 85 SGADVLINNAGI 96 (291)
T ss_dssp CCEEEEEECCCC
T ss_pred CCCCEEEECCcC
Confidence 478999988764
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=80.52 E-value=12 Score=26.79 Aligned_cols=72 Identities=13% Similarity=0.021 Sum_probs=43.7
Q ss_pred EEEEEcCCCcHHHHHHHHHh-CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC-------CCCCC
Q psy10572 53 RILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-------EREAP 124 (204)
Q Consensus 53 ~vLdiG~G~G~~~~~l~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-------~~~~~ 124 (204)
++|-.|++ |.++..+++.+ ..+.+|+.++.++..++.....+ ..++.++..|..+.. .-...
T Consensus 3 ~vlVTGas-~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---------~~~~~~~~~D~~~~~~v~~~~~~~~~~ 72 (230)
T 3guy_A 3 LIVITGAS-SGLGAELAKLYDAEGKATYLTGRSESKLSTVTNCL---------SNNVGYRARDLASHQEVEQLFEQLDSI 72 (230)
T ss_dssp CEEEESTT-SHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTC---------SSCCCEEECCTTCHHHHHHHHHSCSSC
T ss_pred EEEEecCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH---------hhccCeEeecCCCHHHHHHHHHHHhhc
Confidence 45555554 55555555544 23468999999988776665443 235677888866321 01134
Q ss_pred eeEEEECCCc
Q psy10572 125 YDIIHVSPSY 134 (204)
Q Consensus 125 ~D~v~~~~~~ 134 (204)
+|+++.++..
T Consensus 73 ~d~lv~~Ag~ 82 (230)
T 3guy_A 73 PSTVVHSAGS 82 (230)
T ss_dssp CSEEEECCCC
T ss_pred CCEEEEeCCc
Confidence 5999988764
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=80.34 E-value=9.5 Score=28.44 Aligned_cols=87 Identities=21% Similarity=0.135 Sum_probs=48.0
Q ss_pred EEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCC-CeeEEEE
Q psy10572 53 RILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREA-PYDIIHV 130 (204)
Q Consensus 53 ~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~~D~v~~ 130 (204)
+|.-||+|. |..........+...+|+++|.++..++.+++. + .. .. ...+..+. . . ..|+|+.
T Consensus 3 ~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~----g-----~~-~~-~~~~~~~~-~--~~~aDvVil 68 (281)
T 2g5c_A 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL----G-----II-DE-GTTSIAKV-E--DFSPDFVML 68 (281)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT----T-----SC-SE-EESCGGGG-G--GTCCSEEEE
T ss_pred EEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHC----C-----Cc-cc-ccCCHHHH-h--cCCCCEEEE
Confidence 677889886 443222222222123799999999877766432 1 00 01 11121111 1 3 5899988
Q ss_pred CCCccc---hhHHHHHhcCCCcEEEE
Q psy10572 131 SPSYFT---IPQKLLDQLVPGGRMVM 153 (204)
Q Consensus 131 ~~~~~~---~~~~~~~~Lk~gG~l~~ 153 (204)
..+... ++..+...++++..++.
T Consensus 69 avp~~~~~~v~~~l~~~l~~~~iv~~ 94 (281)
T 2g5c_A 69 SSPVRTFREIAKKLSYILSEDATVTD 94 (281)
T ss_dssp CSCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred cCCHHHHHHHHHHHHhhCCCCcEEEE
Confidence 766543 34566677888875544
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=80.08 E-value=6.4 Score=32.14 Aligned_cols=72 Identities=13% Similarity=0.067 Sum_probs=48.8
Q ss_pred CCEEEEEcCCCcHHHHHHHHHhC-CCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC----CCCCCe
Q psy10572 51 GARILDIGSGSGYLTACLAYMAG-PEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY----EREAPY 125 (204)
Q Consensus 51 ~~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~ 125 (204)
..+|+-+||| ..+..+++.+. .+..|+.+|.++..++.+...+ .+.++.+|..... ..-...
T Consensus 3 ~M~iiI~G~G--~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~-----------~~~~i~Gd~~~~~~L~~Agi~~a 69 (461)
T 4g65_A 3 AMKIIILGAG--QVGGTLAENLVGENNDITIVDKDGDRLRELQDKY-----------DLRVVNGHASHPDVLHEAGAQDA 69 (461)
T ss_dssp CEEEEEECCS--HHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHS-----------SCEEEESCTTCHHHHHHHTTTTC
T ss_pred cCEEEEECCC--HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhc-----------CcEEEEEcCCCHHHHHhcCCCcC
Confidence 4577777776 56666777663 2357999999999988776542 4678899976432 112568
Q ss_pred eEEEECCCcc
Q psy10572 126 DIIHVSPSYF 135 (204)
Q Consensus 126 D~v~~~~~~~ 135 (204)
|++++.....
T Consensus 70 d~~ia~t~~D 79 (461)
T 4g65_A 70 DMLVAVTNTD 79 (461)
T ss_dssp SEEEECCSCH
T ss_pred CEEEEEcCCh
Confidence 9888765543
|
| >2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* | Back alignment and structure |
|---|
Probab=80.02 E-value=6.8 Score=31.67 Aligned_cols=100 Identities=13% Similarity=0.049 Sum_probs=55.9
Q ss_pred CCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEE-EcCHHHHHHHHHHhhhcCccccCccceEEEEe---cCCCCCCCCCC
Q psy10572 50 PGARILDIGSGS-GYLTACLAYMAGPEGRVYGV-EHVMELAESSIKNIDKGNSELLDQGRVQFVVW---NGKHGYEREAP 124 (204)
Q Consensus 50 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~v-D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---d~~~~~~~~~~ 124 (204)
...+|.-||||. |..-....... +..+++++ |.++...+.+.+.+...+ .+...+... |..+. .....
T Consensus 19 ~~~rvgiIG~G~~g~~h~~~l~~~-~~~~lvav~d~~~~~~~~~a~~~~~~g-----~~~~~~~~~~~~~~~~l-l~~~~ 91 (444)
T 2ixa_A 19 KKVRIAFIAVGLRGQTHVENMARR-DDVEIVAFADPDPYMVGRAQEILKKNG-----KKPAKVFGNGNDDYKNM-LKDKN 91 (444)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHTC-TTEEEEEEECSCHHHHHHHHHHHHHTT-----CCCCEEECSSTTTHHHH-TTCTT
T ss_pred CCceEEEEecCHHHHHHHHHHHhC-CCcEEEEEEeCCHHHHHHHHHHHHhcC-----CCCCceeccCCCCHHHH-hcCCC
Confidence 346899999985 33322222222 45666654 999988777665443211 112333321 32222 33346
Q ss_pred eeEEEECCCccchhHHHHHhcCCCcEEEEEec
Q psy10572 125 YDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 125 ~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~~ 156 (204)
.|+|++..+...-.+.+..+|+.|=.+++.-+
T Consensus 92 vD~V~i~tp~~~h~~~~~~al~aGkhV~~EKP 123 (444)
T 2ixa_A 92 IDAVFVSSPWEWHHEHGVAAMKAGKIVGMEVS 123 (444)
T ss_dssp CCEEEECCCGGGHHHHHHHHHHTTCEEEECCC
T ss_pred CCEEEEcCCcHHHHHHHHHHHHCCCeEEEeCC
Confidence 99998887776655666666666655655433
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 204 | ||||
| d1i1na_ | 224 | c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransf | 2e-38 | |
| d1r18a_ | 223 | c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransf | 1e-36 | |
| d1jg1a_ | 215 | c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransf | 3e-22 | |
| d1vbfa_ | 224 | c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransf | 1e-19 | |
| d1dl5a1 | 213 | c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methylt | 5e-18 | |
| d2b25a1 | 324 | c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 | 2e-17 | |
| d1i9ga_ | 264 | c.66.1.13 (A:) Probable methyltransferase Rv2118c | 6e-16 | |
| d1yb2a1 | 250 | c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T | 3e-13 | |
| d1o54a_ | 266 | c.66.1.13 (A:) Hypothetical protein TM0748 {Thermo | 9e-13 | |
| d1nkva_ | 245 | c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric | 5e-10 | |
| d1l3ia_ | 186 | c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi | 1e-09 | |
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 4e-08 | |
| d1vl5a_ | 231 | c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill | 5e-08 | |
| d1u2za_ | 406 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 6e-08 | |
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 8e-08 | |
| d1g8aa_ | 227 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyro | 4e-07 | |
| d1jqea_ | 280 | c.66.1.19 (A:) Histamine methyltransferase {Human | 3e-06 | |
| d2igta1 | 309 | c.66.1.51 (A:1-309) Putative methyltransferase Atu | 3e-06 | |
| d1nw3a_ | 328 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 3e-06 | |
| d1y8ca_ | 246 | c.66.1.43 (A:) Putative methyltransferase CAC2371 | 7e-06 | |
| d1nt2a_ | 209 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Arch | 8e-06 | |
| d2p7ia1 | 225 | c.66.1.41 (A:22-246) Hypothetical protein ECA1738 | 4e-05 | |
| d2nxca1 | 254 | c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT | 1e-04 | |
| d2ih2a1 | 223 | c.66.1.27 (A:21-243) DNA methylase TaqI, N-termina | 2e-04 | |
| d1p91a_ | 268 | c.66.1.33 (A:) rRNA methyltransferase RlmA {Escher | 2e-04 | |
| d2fyta1 | 311 | c.66.1.6 (A:238-548) Protein arginine N-methyltran | 2e-04 | |
| d1ri5a_ | 252 | c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf | 2e-04 | |
| d1im8a_ | 225 | c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) | 2e-04 | |
| d1g6q1_ | 328 | c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba | 3e-04 | |
| d1pjza_ | 201 | c.66.1.36 (A:) Thiopurine S-methyltransferase {Pse | 3e-04 | |
| d1g8sa_ | 230 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Meth | 3e-04 | |
| d1ne2a_ | 197 | c.66.1.32 (A:) Hypothetical protein Ta1320 {Archae | 4e-04 | |
| d1dusa_ | 194 | c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeo | 5e-04 | |
| d1xvaa_ | 292 | c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra | 6e-04 | |
| d1oria_ | 316 | c.66.1.6 (A:) Protein arginine N-methyltransferase | 0.001 | |
| d2h00a1 | 250 | c.66.1.54 (A:5-254) Methyltransferase 10 domain co | 0.002 | |
| d2bzga1 | 229 | c.66.1.36 (A:17-245) Thiopurine S-methyltransferas | 0.002 | |
| d2avna1 | 246 | c.66.1.41 (A:1-246) Hypothetical methyltransferase | 0.002 |
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 224 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 129 bits (326), Expect = 2e-38
Identities = 89/189 (47%), Positives = 117/189 (61%), Gaps = 4/189 (2%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSG 60
ML DR ++ PY + IG+ A IS+PH+HA LELL D++ GA+ LD+GSG
Sbjct: 30 MLATDRSHY---AKCNPYMDSPQSIGFQATISAPHMHAYALELLFDQLHEGAKALDVGSG 86
Query: 61 SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE 120
SG LTAC A M G G+V G++H+ EL + S+ N+ K + LL GRVQ VV +G+ GY
Sbjct: 87 SGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYA 146
Query: 121 REAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYTIVTTV 180
EAPYD IHV + +PQ L+DQL PGGR+++PVG Q L DKL DG +I
Sbjct: 147 EEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDG-SIKMKP 205
Query: 181 VRGVRTNPL 189
+ GV PL
Sbjct: 206 LMGVIYVPL 214
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 223 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 125 bits (314), Expect = 1e-36
Identities = 80/194 (41%), Positives = 111/194 (57%), Gaps = 9/194 (4%)
Query: 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSG 60
M DRK++ R PY + IG G IS+PH+HA LE L+D +KPGARILD+GSG
Sbjct: 34 MKETDRKHYSPR---NPYMDAPQPIGGGVTISAPHMHAFALEYLRDHLKPGARILDVGSG 90
Query: 61 SGYLTACLAYMAGPEG-----RVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNG 115
SGYLTAC +G R+ G+EH EL S N++ + +LD G++ V +G
Sbjct: 91 SGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDG 150
Query: 116 KHGYEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYT 175
+ GY APY+ IHV + P +L++QL GGR+++PVG Q + DK A+G
Sbjct: 151 RKGYPPNAPYNAIHVGAAAPDTPTELINQLASGGRLIVPVGPDGGSQYMQQYDKDANG-K 209
Query: 176 IVTTVVRGVRTNPL 189
+ T + GV PL
Sbjct: 210 VEMTRLMGVMYVPL 223
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 215 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Score = 87.6 bits (216), Expect = 3e-22
Identities = 57/190 (30%), Positives = 95/190 (50%), Gaps = 12/190 (6%)
Query: 1 MLRVDRKNFF-TRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGS 59
L+ R + + + I G +S+PH+ A MLE+ +KPG IL++G+
Sbjct: 30 FLKYPRYLSVEDKYKKYAHIDEPLPIPAGQTVSAPHMVAIMLEI--ANLKPGMNILEVGT 87
Query: 60 GSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY 119
GSG+ A ++ + VY +E + EL E + +N+++ V ++ +G G+
Sbjct: 88 GSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLER-----AGVKNVHVILGDGSKGF 140
Query: 120 EREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGYTIVTT 179
+APYD+I V+ IP+ L++QL GG++++PVG Q L + K DG I
Sbjct: 141 PPKAPYDVIIVTAGAPKIPEPLIEQLKIGGKLIIPVGSYHLWQELLEVRKTKDGIKI--K 198
Query: 180 VVRGVRTNPL 189
GV PL
Sbjct: 199 NHGGVAFVPL 208
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} Length = 224 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Score = 81.4 bits (200), Expect = 1e-19
Identities = 46/196 (23%), Positives = 88/196 (44%), Gaps = 26/196 (13%)
Query: 1 MLRVDRKNFFTRVVNEPYR-------IKSRQIGYGADISSPHIHAQMLELLKDKIKPGAR 53
+VDR F + E + ++ I G + ++ ++ ML+ + + G +
Sbjct: 20 FNKVDRSLF----LPENLKDYAYAHTHEALPILPGINTTALNLGIFMLD--ELDLHKGQK 73
Query: 54 ILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW 113
+L+IG+G GY TA +A + +V VE ++ + K L ++ ++
Sbjct: 74 VLEIGTGIGYYTALIAEIVD---KVVSVEINEKMYNYASKL-------LSYYNNIKLILG 123
Query: 114 NGKHGYEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADG 173
+G GYE E PYD + V + T+ K +QL GG M++P+G + Q L + K +
Sbjct: 124 DGTLGYEEEKPYDRVVVWATAPTLLCKPYEQLKEGGIMILPIGVG-RVQKLYKVIKKGNS 182
Query: 174 YTIVTTVVRGVRTNPL 189
++ + V +
Sbjct: 183 PSL--ENLGEVMFGRI 196
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} Length = 213 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Score = 76.6 bits (187), Expect = 5e-18
Identities = 46/195 (23%), Positives = 83/195 (42%), Gaps = 14/195 (7%)
Query: 1 MLRVDRKNFFTRVVNEPY------RIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARI 54
L + R+ F T+ Y + + S P + A +E + R+
Sbjct: 22 FLEIPREEFLTKSYPLSYVYEDIVLVSYDDGEEYSTSSQPSLMALFMEWVGLDKGM--RV 79
Query: 55 LDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWN 114
L+IG G+GY A ++ + G +G V VE+ ++ E + +N+++ V FV +
Sbjct: 80 LEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLG-----IENVIFVCGD 134
Query: 115 GKHGYEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADGY 174
G +G +PYD+I V+ +P+ QL GGR+++P+ + + K D Y
Sbjct: 135 GYYGVPEFSPYDVIFVTVGVDEVPETWFTQLKEGGRVIVPINLKLSRRQPAFLFKKKDPY 194
Query: 175 TIVTTVVRGVRTNPL 189
+V R
Sbjct: 195 -LVGNYKLETRFITA 208
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Score = 76.8 bits (188), Expect = 2e-17
Identities = 31/143 (21%), Positives = 51/143 (35%), Gaps = 11/143 (7%)
Query: 22 SRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV 81
+ G I+ P +L ++ I PG +L+ GSGSG ++ L+ G +GRV
Sbjct: 72 VVLMKRGTAITFPKDINMILSMMD--INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISF 129
Query: 82 EHVMELAESSIKNIDK-GNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVS--------P 132
E + + + KN +S L + H A DI ++
Sbjct: 130 EVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDML 189
Query: 133 SYFTIPQKLLDQLVPGGRMVMPV 155
+ L GG + V
Sbjct: 190 NPHVTLPVFYPHLKHGGVCAVYV 212
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 264 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 71.9 bits (176), Expect = 6e-16
Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 5/131 (3%)
Query: 23 RQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE 82
+ G + P AQ++ I PGAR+L+ G+GSG LT L GP G+V E
Sbjct: 71 MSMPRGPQVIYPKDAAQIVHEGD--IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYE 128
Query: 83 HVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYD-IIHVSPSYFTIPQKL 141
+ AE + +N+ + D + VV + + D + + + + +
Sbjct: 129 QRADHAEHARRNVSGCYGQPPD--NWRLVVSDLADSELPDGSVDRAVLDMLAPWEVLDAV 186
Query: 142 LDQLVPGGRMV 152
LV GG ++
Sbjct: 187 SRLLVAGGVLM 197
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Score = 63.9 bits (155), Expect = 3e-13
Identities = 29/131 (22%), Positives = 51/131 (38%), Gaps = 6/131 (4%)
Query: 22 SRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV 81
R I I S + ++ ++PG IL++G GSG +++ + Y +G + V
Sbjct: 59 GRVIRRNTQIISEIDASYIIMRCG--LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVV 116
Query: 82 EHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIPQKL 141
E E ++K SE D G V+ + + +I P + QK+
Sbjct: 117 ----ERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQMYDAVIADIPDPWNHVQKI 172
Query: 142 LDQLVPGGRMV 152
+ PG
Sbjct: 173 ASMMKPGSVAT 183
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Score = 62.8 bits (152), Expect = 9e-13
Identities = 32/129 (24%), Positives = 52/129 (40%), Gaps = 6/129 (4%)
Query: 25 IGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHV 84
+ I P + + +L +K G RI+D G GSG + A LA G G+V+ E
Sbjct: 80 MKRRTQIVYPKDSSFIAMMLD--VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKR 137
Query: 85 MELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIPQKLLDQ 144
E A+ + N+ + RV V + G++ + + P + K +
Sbjct: 138 EEFAKLAESNLT----KWGLIERVTIKVRDISEGFDEKDVDALFLDVPDPWNYIDKCWEA 193
Query: 145 LVPGGRMVM 153
L GGR
Sbjct: 194 LKGGGRFAT 202
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Score = 55.0 bits (131), Expect = 5e-10
Identities = 30/128 (23%), Positives = 54/128 (42%), Gaps = 7/128 (5%)
Query: 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSI 92
+ +A + +L+ +KPG RILD+GSGSG + A G G++ +
Sbjct: 18 TEEKYATLGRVLR--MKPGTRILDLGSGSGEMLCTWARDHGI--TGTGIDMSSLFTAQAK 73
Query: 93 KNIDK-GNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRM 151
+ ++ G SE + + + A ++ + + L L PGG M
Sbjct: 74 RRAEELGVSERVHFIHNDAAGYVANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIM 133
Query: 152 VMPVGEPF 159
+ +GEP+
Sbjct: 134 L--IGEPY 139
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 53.3 bits (127), Expect = 1e-09
Identities = 30/166 (18%), Positives = 60/166 (36%), Gaps = 15/166 (9%)
Query: 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSI 92
+ + ++ L + +D+G G+G +T LA VY ++ E ++
Sbjct: 18 AMEVRCLIMCLAE--PGKNDVAVDVGCGTGGVTLELAGRVRR---VYAIDRNPEAISTTE 72
Query: 93 KNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIP---QKLLDQLVPGG 149
N+ + V + + + DI V S + + + D+L PGG
Sbjct: 73 MNLQRHGLG----DNVTLMEGDAPEALCKIPDIDIAVVGGSGGELQEILRIIKDKLKPGG 128
Query: 150 RMVMPVGEPFKGQNLTIIDKLAD-GYTIVTTVVRGVRTNPLYRDRF 194
R+++ ++ L D G+ + T + R L R
Sbjct: 129 RIIVTA--ILLETKFEAMECLRDLGFDVNITELNIARGRALDRGTM 172
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 49.9 bits (118), Expect = 4e-08
Identities = 19/112 (16%), Positives = 38/112 (33%), Gaps = 11/112 (9%)
Query: 47 KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQG 106
KI I+D G G GYL L + + G++ L + +
Sbjct: 24 KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRL------LPY 77
Query: 107 RVQFVVWNGKHGYEREAPYDII-----HVSPSYFTIPQKLLDQLVPGGRMVM 153
+F+ + + I + T+ QK++ + GG+++
Sbjct: 78 DSEFLEGDATEIELNDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIIC 129
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Score = 49.3 bits (116), Expect = 5e-08
Identities = 17/127 (13%), Positives = 46/127 (36%), Gaps = 12/127 (9%)
Query: 28 GADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVME- 86
G+D+ A+++++ +K +LD+ +G G++ A +V + +
Sbjct: 1 GSDL------AKLMQIAA--LKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDI 49
Query: 87 LAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIPQKLLDQLV 146
L + G+ ++ + + H P+ + + L
Sbjct: 50 LKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLK 109
Query: 147 PGGRMVM 153
GG++++
Sbjct: 110 KGGQLLL 116
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.3 bits (117), Expect = 6e-08
Identities = 21/134 (15%), Positives = 44/134 (32%), Gaps = 16/134 (11%)
Query: 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSI 92
P+ + + + + +K G +D+GSG G A G +G E + + ++ +I
Sbjct: 201 LPNFLSDVYQQCQ--LKKGDTFMDLGSGVGNCVVQAALECGC-ALSFGCEIMDDASDLTI 257
Query: 93 KNIDKGNSELLDQGRVQFVVWNGKHGYEREAPY--------DIIHV-----SPSYFTIPQ 139
++ G V + D+I V +
Sbjct: 258 LQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVE 317
Query: 140 KLLDQLVPGGRMVM 153
K+L G +++
Sbjct: 318 KILQTAKVGCKIIS 331
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 48.8 bits (115), Expect = 8e-08
Identities = 19/120 (15%), Positives = 37/120 (30%), Gaps = 6/120 (5%)
Query: 37 HAQMLELLKDK--IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKN 94
H L L+ + R+LDIG+G+G+ + GV+ E+ E +
Sbjct: 1 HHHSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSF 57
Query: 95 IDKGNSELLDQGRVQFVVWNGKHGYE-REAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVM 153
+ E + + H +++ L GR ++
Sbjct: 58 AQEKGVENVRFQQGTAESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLL 117
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 46.6 bits (110), Expect = 4e-07
Identities = 19/140 (13%), Positives = 54/140 (38%), Gaps = 7/140 (5%)
Query: 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGR 107
IKPG +L +G SG + ++ + G EG+++G+E + + +++ + + G
Sbjct: 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGD 130
Query: 108 VQFVVWNGKHGYEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMV-------MPVGEPFK 160
+ + ++ + + L GG + + V + +
Sbjct: 131 ATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPE 190
Query: 161 GQNLTIIDKLADGYTIVTTV 180
+ +L++ + ++ +
Sbjct: 191 QVFREVERELSEYFEVIERL 210
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.2 bits (103), Expect = 3e-06
Identities = 18/135 (13%), Positives = 40/135 (29%), Gaps = 17/135 (12%)
Query: 35 HIHAQMLELLKD--KIKPGARILDIGSGSGYLT-----ACLAYMAGPEGRVYGVEHVMEL 87
+ ++ ++ K +IL IG G+G + A G VE E
Sbjct: 23 FMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQ 82
Query: 88 AESSIKNIDKGNSELLDQGRVQFV----VWNGKHGYEREAPYDIIHVSPSYFTIP----- 138
+ + K ++ + + + +D IH+ + +
Sbjct: 83 IAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPAT 142
Query: 139 -QKLLDQLVPGGRMV 152
+ L +M+
Sbjct: 143 LKFFHSLLGTNAKML 157
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Score = 44.4 bits (104), Expect = 3e-06
Identities = 24/149 (16%), Positives = 53/149 (35%), Gaps = 19/149 (12%)
Query: 5 DRKNFFTRVVNEPYRIKSRQIGYGADISSPH---------IHAQMLELLKDKIKPGARIL 55
R F + E + + + + ++ +H + L+ + ++L
Sbjct: 78 GRWRFPKEALGETWPLSLLGVEFLGRFTAFRHVGVFPEQIVHWEWLKNAVETADRPLKVL 137
Query: 56 DIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNG 115
++ +G + +A AG E V V+ + + +N L+Q ++++ +
Sbjct: 138 NLFGYTGVAS-LVAAAAGAE--VTHVDASKKAIGWAKENQVLAG---LEQAPIRWICEDA 191
Query: 116 KHGYEREA----PYDIIHVSPSYFTIPQK 140
+RE YDII P F
Sbjct: 192 MKFIQREERRGSTYDIILTDPPKFGRGTH 220
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.1 bits (103), Expect = 3e-06
Identities = 28/145 (19%), Positives = 50/145 (34%), Gaps = 16/145 (11%)
Query: 36 IHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNI 95
+ AQM++ +K + +D+GSG G + +A A YGVE A+ +
Sbjct: 139 LVAQMIDEIK--MTDDDLFVDLGSGVGQVVLQVA-AATNCKHHYGVEKADIPAKYAETMD 195
Query: 96 DKGNSELLDQG----RVQFVVWNGKHGYEREAPYDIIHVS-------PSYFTIPQKLLDQ 144
+ + G + RE + + P ++
Sbjct: 196 REFRKWMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFAN 255
Query: 145 LVPGGRMVMPVGEPFKGQNLTIIDK 169
+ GGR+V +PF N I +
Sbjct: 256 MKEGGRIV--SSKPFAPLNFRINSR 278
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Score = 43.1 bits (100), Expect = 7e-06
Identities = 17/137 (12%), Positives = 39/137 (28%), Gaps = 6/137 (4%)
Query: 27 YGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVME 86
AD+ ++E + LD+ G+G LT L + V+ E
Sbjct: 14 IRADVDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKF---KNTWAVDLSQE 70
Query: 87 LAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIPQ---KLLD 143
+ + + + + + D + + + + +
Sbjct: 71 MLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSN 130
Query: 144 QLVPGGRMVMPVGEPFK 160
L GG + + +K
Sbjct: 131 HLKEGGVFIFDINSYYK 147
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 42.8 bits (100), Expect = 8e-06
Identities = 25/152 (16%), Positives = 57/152 (37%), Gaps = 8/152 (5%)
Query: 36 IHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNI 95
+ A +L+ + K++ R+L +G+ SG + LA + EG +Y VE+ + E ++ +
Sbjct: 42 LAAMILKGHRLKLRGDERVLYLGAASGTTVSHLADIV-DEGIIYAVEYSAKPFEKLLELV 100
Query: 96 DKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPV 155
+ N+ + + + Y I + L G +V+ V
Sbjct: 101 RERNNIIPLLFDASKPWKYSGIVEKVDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMV 160
Query: 156 -------GEPFKGQNLTIIDKLADGYTIVTTV 180
+ +++ ++ + IV
Sbjct: 161 KARSIDSTAEPEEVFKSVLKEMEGDFKIVKHG 192
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Score = 40.7 bits (94), Expect = 4e-05
Identities = 17/120 (14%), Positives = 37/120 (30%), Gaps = 7/120 (5%)
Query: 36 IHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNI 95
+H M+ +PG +L++GS G + + + VE E+
Sbjct: 7 MHPFMVRAFTPFFRPG-NLLELGSFKGDF---TSRLQEHFNDITCVEASE---EAISHAQ 59
Query: 96 DKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPV 155
+ + + + + H+ + + D L GGR+ +
Sbjct: 60 GRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVC 119
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Score = 39.9 bits (92), Expect = 1e-04
Identities = 28/159 (17%), Positives = 57/159 (35%), Gaps = 12/159 (7%)
Query: 28 GADISSPHIHAQML--ELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVM 85
G + H L + L ++PG ++LD+G+GSG L + G+ GV+
Sbjct: 96 GMAFGTGHHETTRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKLG---GKALGVDIDP 152
Query: 86 ELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIPQKLLDQL 145
+ + N + + R + + + + + + L
Sbjct: 153 MVLPQAEANAKRNGV----RPRFLEGSLEAALPFGPFDLLVANLYAELHAALAPRYREAL 208
Query: 146 VPGGRMVMPVGEPFKGQNLTIIDKLAD-GYTIVTTVVRG 183
VPGGR + + K + + + +A G+ + G
Sbjct: 209 VPGGRAL--LTGILKDRAPLVREAMAGAGFRPLEEAAEG 245
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} Length = 223 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Score = 38.9 bits (89), Expect = 2e-04
Identities = 17/88 (19%), Positives = 26/88 (29%), Gaps = 2/88 (2%)
Query: 34 PHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIK 93
P + M+ L + G R+L+ G G R GVE + +
Sbjct: 5 PEVVDFMVSLAE--APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPPW 62
Query: 94 NIDKGNSELLDQGRVQFVVWNGKHGYER 121
LL + F + G Y
Sbjct: 63 AEGILADFLLWEPGEAFDLILGNPPYGI 90
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Score = 39.2 bits (90), Expect = 2e-04
Identities = 28/134 (20%), Positives = 51/134 (38%), Gaps = 12/134 (8%)
Query: 20 IKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVY 79
+++R+ A P A + +L + +LDIG G GY T A A PE +
Sbjct: 54 MQARRAFLDAGHYQPLRDAIVAQLRERLDDKATAVLDIGCGEGYYTHAFAD-ALPEITTF 112
Query: 80 GVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIPQ 139
G++ +++ K +V F V + + D I + +
Sbjct: 113 GLDVSKVAIKAAAKRYP----------QVTFCVASSHRLPFSDTSMDAIIRIYAPCKA-E 161
Query: 140 KLLDQLVPGGRMVM 153
+L + PGG ++
Sbjct: 162 ELARVVKPGGWVIT 175
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.1 bits (90), Expect = 2e-04
Identities = 26/133 (19%), Positives = 49/133 (36%), Gaps = 18/133 (13%)
Query: 36 IHAQMLE------------LLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEH 83
IH +ML+ I +LD+G G+G L+ A AG + +V GV+
Sbjct: 9 IHEEMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAA-KAGAK-KVLGVDQ 66
Query: 84 --VMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYER--EAPYDIIHVSPSYFTIPQ 139
++ A I+ ++ L +G+++ V + E + ++
Sbjct: 67 SEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLY 126
Query: 140 KLLDQLVPGGRMV 152
L GG +
Sbjct: 127 AKNKYLAKGGSVY 139
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Score = 38.8 bits (89), Expect = 2e-04
Identities = 24/158 (15%), Positives = 42/158 (26%), Gaps = 10/158 (6%)
Query: 43 LLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSEL 102
L++ K G +LD+G G G G YGV+ +
Sbjct: 17 LIRLYTKRGDSVLDLGCGKGGDLLKYE--RAGIGEYYGVDIAEVSINDARVRARNMKRRF 74
Query: 103 LDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPFKGQ 162
R Q + F+ + L R + P G
Sbjct: 75 KVFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGG------ 128
Query: 163 NLTIIDKLADGYTIVTTVVRGVRTNPLYRDRFQQKKYY 200
I + I+ +G +N Y+ ++ +
Sbjct: 129 --YFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDV 164
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Score = 38.6 bits (88), Expect = 2e-04
Identities = 18/124 (14%), Positives = 45/124 (36%), Gaps = 3/124 (2%)
Query: 34 PHIHAQMLELLKDKIKPGARILDIGSGSGYLT-ACLAYMAGPEGRVYGVEHVMELAESSI 92
+I + L + + + + D+G G T + + P ++ G+++ + E
Sbjct: 23 SNIITAIGMLAERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCR 82
Query: 93 KNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSP--SYFTIPQKLLDQLVPGGR 150
++I +SE+ + + + P + K+ + L P G
Sbjct: 83 QHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGV 142
Query: 151 MVMP 154
+V+
Sbjct: 143 LVLS 146
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.7 bits (89), Expect = 3e-04
Identities = 27/118 (22%), Positives = 48/118 (40%), Gaps = 11/118 (9%)
Query: 39 QMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVE--HVMELAESSIKNID 96
Q +L KDK +LD+G G+G L+ A G + V GV+ ++E+A+ ++
Sbjct: 32 QNKDLFKDK-----IVLDVGCGTGILSMFAA-KHGAK-HVIGVDMSSIIEMAKELVELNG 84
Query: 97 KGNSELLDQGRVQFVVWNG--KHGYEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMV 152
+ L +G+++ V E + T+ LV GG +
Sbjct: 85 FSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF 142
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} Length = 201 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Score = 38.2 bits (87), Expect = 3e-04
Identities = 13/137 (9%), Positives = 31/137 (22%), Gaps = 20/137 (14%)
Query: 34 PHIHAQMLELLKD-KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSI 92
++ + + + PGAR+L G ++++G V G E E
Sbjct: 3 SEVNKDLQQYWSSLNVVPGARVLVPLCGKSQDM---SWLSGQGYHVVGAELSEAAVERYF 59
Query: 93 KNIDKGNSELLDQGRVQFVVWNGKH--------GYEREAPYDIIHVSPSYF--------T 136
+ + + + +
Sbjct: 60 TERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRER 119
Query: 137 IPQKLLDQLVPGGRMVM 153
Q L + ++
Sbjct: 120 YVQHLEALMPQACSGLL 136
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 38.2 bits (88), Expect = 3e-04
Identities = 16/112 (14%), Positives = 37/112 (33%), Gaps = 13/112 (11%)
Query: 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGR 107
IK ++IL +G+ +G + +A + +G VY +E+ + + + +
Sbjct: 72 IKRDSKILYLGASAGTTPSHVADI-ADKGIVYAIEYAPRIMRELLDACAE------RENI 124
Query: 108 VQFVVWNGKHGYEREAPYDIIHVSPSYFTIPQ------KLLDQLVPGGRMVM 153
+ + K + + Q L GG ++
Sbjct: 125 IPILGDANKPQEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMI 176
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 197 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 37.4 bits (86), Expect = 4e-04
Identities = 21/173 (12%), Positives = 51/173 (29%), Gaps = 19/173 (10%)
Query: 33 SPHIHAQML-ELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGV-EHVMELAES 90
A L E+ D G ++D G+G+G L + + + +E A+
Sbjct: 30 DASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKR 89
Query: 91 SIKNIDKGNSELLD-QGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIPQKLLDQLVPGG 149
+ ++ +++ + G+ + N G + + +D+
Sbjct: 90 NCGGVNFMVADVSEISGKYDTWIMNPPFGSVVK-------------HSDRAFIDKAFETS 136
Query: 150 RMVMPVGEPFKGQNLTIIDKLADGYTIVTTVVRGVRTNPLYRDRFQQKKYYTE 202
+ +G + + + V + T P + E
Sbjct: 137 MWIYSIG---NAKARDFLRREFSARGDVFREEKVYITVPRIYRHHSYDRARIE 186
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 37.3 bits (85), Expect = 5e-04
Identities = 24/149 (16%), Positives = 48/149 (32%), Gaps = 16/149 (10%)
Query: 40 MLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGN 99
++E + + ILD+G G G + LA + + + +NI N
Sbjct: 44 LVENVV--VDKDDDILDLGCGYGVIGIALADE---VKSTTMADINRRAIKLAKENIKLNN 98
Query: 100 SELLDQGRVQFVVWNGKHGYEREAPYDII------HVSPSYFTIPQKLLDQLVPGGRMVM 153
D ++ V + + II I ++ + L G + +
Sbjct: 99 L---DNYDIRVVHSDLYENVKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWV 155
Query: 154 PVGEPFKGQNLTIIDKLADGYTIVTTVVR 182
+ K ++ + D + V TV
Sbjct: 156 VIQ--TKQGAKSLAKYMKDVFGNVETVTI 182
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 37.6 bits (86), Expect = 6e-04
Identities = 24/132 (18%), Positives = 44/132 (33%), Gaps = 15/132 (11%)
Query: 35 HIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKN 94
A +L LL+ R+LD+ G+G + L V + +++ A N
Sbjct: 43 EYKAWLLGLLRQH--GCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWN 100
Query: 95 IDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIPQKLLDQ---------- 144
K + + K + +I + S+ +P DQ
Sbjct: 101 RRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNI 160
Query: 145 ---LVPGGRMVM 153
+ PGG +V+
Sbjct: 161 ASMVRPGGLLVI 172
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 37.1 bits (85), Expect = 0.001
Identities = 22/133 (16%), Positives = 41/133 (30%), Gaps = 18/133 (13%)
Query: 36 IHAQMLE------------LLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEH 83
IH +ML+ + +LD+GSG+G L A AG +V G+E
Sbjct: 7 IHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAA-KAGAR-KVIGIEC 64
Query: 84 VMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIPQKLLD 143
+ ++ + + + + Y ++ +L
Sbjct: 65 SSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLH 124
Query: 144 ----QLVPGGRMV 152
L P G +
Sbjct: 125 ARDKWLAPDGLIF 137
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.5 bits (81), Expect = 0.002
Identities = 21/148 (14%), Positives = 45/148 (30%), Gaps = 8/148 (5%)
Query: 35 HIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEH---VMELAESS 91
+ + DK R +DIG+G+ + L E A+ +
Sbjct: 47 WVEDLIGHQDSDKSTLR-RGIDIGTGASCIYPLLGAT-LNGWYFLATEVDDMCFNYAKKN 104
Query: 92 IKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRM 151
++ + + + + + ++ + E E YD +P +F + R
Sbjct: 105 VEQNNLSDLIKVVKVPQKTLLMDA-LKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRR 163
Query: 152 VMPVGEPFKGQNLTI--IDKLADGYTIV 177
P G + +L I+
Sbjct: 164 PPPSSVNTGGITEIMAEGGELEFVKRII 191
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.3 bits (80), Expect = 0.002
Identities = 22/188 (11%), Positives = 45/188 (23%), Gaps = 35/188 (18%)
Query: 19 RIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRV 78
+ + + + + + + LK K G R+ G + + A V
Sbjct: 16 KWVNGKTAFHQEQGHQLLKKHLDTFLK--GKSGLRVFFPLCGKAV---EMKWFADRGHSV 70
Query: 79 YGVEHV------------MELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYD 126
GVE + +E I I G + +
Sbjct: 71 VGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDLPRTNIGKF 130
Query: 127 --------IIHVSPSYF-TIPQKLLDQLVPGGRMVM---------PVGEPFKGQNLTIID 168
++ ++P + L + ++ G PF + I
Sbjct: 131 DMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYDPTKHPGPPFYVPHAEIER 190
Query: 169 KLADGYTI 176
I
Sbjct: 191 LFGKICNI 198
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Score = 35.5 bits (80), Expect = 0.002
Identities = 23/130 (17%), Positives = 42/130 (32%), Gaps = 15/130 (11%)
Query: 30 DISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAE 89
H + L++ +K R+LD+G G+G + L V V+ E+ E
Sbjct: 22 TPKWKLYHRLIGSFLEEYLKNPCRVLDLGGGTGKWSLFLQER---GFEVVLVDPSKEMLE 78
Query: 90 SSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIPQKLLDQ----L 145
+ + + V+ + + SY K + L
Sbjct: 79 VAREKG--------VKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVL 130
Query: 146 VPGGRMVMPV 155
VP G ++ V
Sbjct: 131 VPDGLLIATV 140
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 204 | |||
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 100.0 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.97 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.97 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.96 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.96 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.83 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.81 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.79 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.79 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.79 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.78 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.78 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.76 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.75 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.74 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.73 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.73 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.73 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.72 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.71 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.71 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.71 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.7 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.7 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.69 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.69 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.68 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.67 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.66 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.65 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.65 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.64 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.64 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.63 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.62 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.62 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.61 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.61 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.6 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.58 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.57 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.57 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 99.53 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.53 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 99.52 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.51 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.5 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.5 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.49 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.49 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.49 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.48 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.48 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.48 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.46 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 99.44 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 99.44 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 99.44 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.43 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.43 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 99.42 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.4 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 99.39 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 99.38 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 99.38 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 99.37 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.36 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 99.35 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.31 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 99.29 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 99.27 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 99.23 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 99.21 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 99.19 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 99.14 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 99.14 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 99.14 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 99.11 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 99.1 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 99.06 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 99.05 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 99.01 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 99.01 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 99.0 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.97 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.96 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 98.94 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.93 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 98.92 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 98.92 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.92 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.9 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.8 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 98.77 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 98.77 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 98.66 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.63 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 98.58 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.4 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 98.26 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 98.26 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 98.07 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 98.06 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 98.03 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 98.01 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 97.99 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 97.92 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 97.9 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 97.86 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 97.86 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 97.85 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 97.83 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.7 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 97.67 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 97.59 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 97.55 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 97.42 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 97.38 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 97.35 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 97.26 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 97.23 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 97.22 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 97.21 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 97.16 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 97.0 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 96.9 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 96.81 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 96.75 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 96.7 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 96.6 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 96.59 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 96.53 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 96.05 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 95.87 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 95.83 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 94.93 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 94.92 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 94.88 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 94.65 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 94.52 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 94.37 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 94.18 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 94.0 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 93.95 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 93.91 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 93.89 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 93.71 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 93.68 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 93.63 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 93.33 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 92.68 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 92.62 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 92.45 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 92.19 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 92.18 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 91.25 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 91.2 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 90.39 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 90.23 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 90.23 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 89.99 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 89.82 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 89.67 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 89.53 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 89.2 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 88.61 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 88.58 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 88.44 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 88.31 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 88.05 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 87.6 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 87.45 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 87.14 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 87.06 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 86.75 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 86.58 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 86.51 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 86.42 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 86.04 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 85.71 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 85.65 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 85.53 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 85.48 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 85.44 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 85.21 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 84.69 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 84.02 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 83.73 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 83.39 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 82.91 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 82.73 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 82.64 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 82.25 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 82.13 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 82.06 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 81.18 | |
| d1snya_ | 248 | Carbonyl reductase sniffer {Fruit fly (Drosophila | 80.95 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 80.73 |
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2e-33 Score=209.60 Aligned_cols=193 Identities=46% Similarity=0.751 Sum_probs=172.5
Q ss_pred CcccccccccccccCCccccccccccCCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEE
Q psy10572 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYG 80 (204)
Q Consensus 1 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~ 80 (204)
|..|||+.|+|+ .+|.|.+++++.+++++.|++.+.+++.+...++++.+|||||||+|+.+..+++..++.++|++
T Consensus 30 ~~~vpRe~Fvp~---~aY~D~~l~i~~~~~is~P~~~a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ 106 (224)
T d1i1na_ 30 MLATDRSHYAKC---NPYMDSPQSIGFQATISAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIG 106 (224)
T ss_dssp HHTSCGGGTCSS---CTTSSSCEEEETTEEECCHHHHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEE
T ss_pred HHhCCHHHcCCc---ccCCCCCccccchhhhhhhHHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEE
Confidence 467999999994 58999999999999999999999999999766899999999999999999999999877889999
Q ss_pred EEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEEecCCCC
Q psy10572 81 VEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPFK 160 (204)
Q Consensus 81 vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~~~~~~ 160 (204)
+|.++.+++.|+++++..........++.+..+|+...+++.++||+|+++...+++++.+.+.|||||++++.+.....
T Consensus 107 ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~~~~fD~I~~~~~~~~ip~~l~~~LkpGG~LV~pv~~~~~ 186 (224)
T d1i1na_ 107 IDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGG 186 (224)
T ss_dssp EESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEEEEECSBBSSCCHHHHHTEEEEEEEEEEESCTTS
T ss_pred EcCCHHHHHHHHHhccccCcccccccceEEEEeecccccchhhhhhhhhhhcchhhcCHHHHhhcCCCcEEEEEEccCCC
Confidence 99999999999999876543333456899999998887777789999999999999999999999999999999987777
Q ss_pred cceEEEEeecCCceEEEeeeeeeeeeeecccchhhhh
Q psy10572 161 GQNLTIIDKLADGYTIVTTVVRGVRTNPLYRDRFQQK 197 (204)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~ 197 (204)
.+.+..+.+...+.+.. ..++++.|.||.+.++++.
T Consensus 187 ~q~l~~~~k~~~~~~~~-~~l~~v~fvPl~~~~~~~~ 222 (224)
T d1i1na_ 187 NQMLEQYDKLQDGSIKM-KPLMGVIYVPLTDKEKQWS 222 (224)
T ss_dssp CEEEEEEEECTTSCEEE-EEEEEECCCBCCCHHHHCC
T ss_pred cEEEEEEEEeCCCeEEE-EEEeeEEEECCCCchhhcc
Confidence 78888888888888888 8999999999999887764
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.97 E-value=1.8e-30 Score=191.57 Aligned_cols=181 Identities=30% Similarity=0.478 Sum_probs=162.9
Q ss_pred Cccccccccccccc-CCccccccccccCCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEE
Q psy10572 1 MLRVDRKNFFTRVV-NEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVY 79 (204)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~ 79 (204)
|..|||+.|+|+.+ ..+|.|.+++++.+++++.|++.+.+++.+. ++++.+|||||||+|+.+..+++..+ ++|+
T Consensus 30 ~~~VpRe~Fvp~~~~~~AY~D~~l~i~~g~~is~P~~~a~ml~~L~--l~~g~~VLeIGsGsGY~taila~l~g--~~V~ 105 (215)
T d1jg1a_ 30 FLKYPRYLSVEDKYKKYAHIDEPLPIPAGQTVSAPHMVAIMLEIAN--LKPGMNILEVGTGSGWNAALISEIVK--TDVY 105 (215)
T ss_dssp HHHSCGGGGSCGGGGGGTTSSSCEECSTTCEECCHHHHHHHHHHHT--CCTTCCEEEECCTTSHHHHHHHHHHC--SCEE
T ss_pred HHcCCchhcCCHHHhhcccccCCcccchhhhhhhhhhHHHHHHhhc--cCccceEEEecCCCChhHHHHHHhhC--ceeE
Confidence 46799999999999 9999999999999999999999999999998 99999999999999999999999874 4799
Q ss_pred EEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEEecCCC
Q psy10572 80 GVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 80 ~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
++|.++.+.+.|++++...+ ..|+.++++|....+...++||.|++.+....+++.+...|+|||++++.+....
T Consensus 106 ~ie~~~~l~~~a~~~l~~~g-----~~nv~~~~gd~~~g~~~~~pfD~Iiv~~a~~~ip~~l~~qL~~gGrLv~pv~~~~ 180 (215)
T d1jg1a_ 106 TIERIPELVEFAKRNLERAG-----VKNVHVILGDGSKGFPPKAPYDVIIVTAGAPKIPEPLIEQLKIGGKLIIPVGSYH 180 (215)
T ss_dssp EEESCHHHHHHHHHHHHHTT-----CCSEEEEESCGGGCCGGGCCEEEEEECSBBSSCCHHHHHTEEEEEEEEEEECSSS
T ss_pred EEeccHHHHHHHHHHHHHcC-----CceeEEEECccccCCcccCcceeEEeecccccCCHHHHHhcCCCCEEEEEEccCC
Confidence 99999999999999998743 5799999999988888789999999999999999999999999999999988776
Q ss_pred CcceEEEEeecCCceEEEeeeeeeeeeeecccc
Q psy10572 160 KGQNLTIIDKLADGYTIVTTVVRGVRTNPLYRD 192 (204)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~ 192 (204)
..+.+..+.+.. +.+.. ..+++++|+||.+.
T Consensus 181 ~~q~l~~~~k~~-~~~~~-~~l~~v~fvPl~g~ 211 (215)
T d1jg1a_ 181 LWQELLEVRKTK-DGIKI-KNHGGVAFVPLIGE 211 (215)
T ss_dssp SCEEEEEEEEET-TEEEE-EEEEEECCCBCBST
T ss_pred ccEEEEEEEEEC-CEEEE-EEEccEEEEcCCCc
Confidence 666677676644 44777 88999999999754
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.97 E-value=7.1e-31 Score=195.17 Aligned_cols=185 Identities=43% Similarity=0.713 Sum_probs=161.9
Q ss_pred CcccccccccccccCCccccccccccCCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCC-----C
Q psy10572 1 MLRVDRKNFFTRVVNEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGP-----E 75 (204)
Q Consensus 1 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~-----~ 75 (204)
|.+|||+.|+|+ .+|.|.+++++.+++++.|++.+.+++.+...++++.+|||||||+|+.+..+++..++ .
T Consensus 34 ~~~vpRe~Fvp~---~aY~D~~lpi~~~~~is~P~~~a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~ 110 (223)
T d1r18a_ 34 MKETDRKHYSPR---NPYMDAPQPIGGGVTISAPHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDAD 110 (223)
T ss_dssp HHTSCGGGTCSS---CTTBSSCEEEETTEEECCHHHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTT
T ss_pred HHhCCHHHcCCc---cccCCCCccccCCceeehhhhHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcc
Confidence 568999999995 49999999999999999999999999999655899999999999999999999988643 2
Q ss_pred ceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 76 GRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 76 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
.+|+++|.++.+++.|++++...........++.++.+|+...+.+.++||.|++.+...++++.+.+.|+|||++++.+
T Consensus 111 ~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~~~~~fD~Iiv~~a~~~~p~~l~~~Lk~gG~lV~pv 190 (223)
T d1r18a_ 111 TRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPNAPYNAIHVGAAAPDTPTELINQLASGGRLIVPV 190 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGGCSEEEEEECSCBSSCCHHHHHTEEEEEEEEEEE
T ss_pred cEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEecccccccccccceeeEEEEeechhchHHHHHhcCCCcEEEEEE
Confidence 48999999999999999987553211122468999999998888778899999999999999999999999999999998
Q ss_pred cCCCCcceEEEEeecCCceEEEeeeeeeeeeeec
Q psy10572 156 GEPFKGQNLTIIDKLADGYTIVTTVVRGVRTNPL 189 (204)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl 189 (204)
......+.+..+.+...+.+.. ..++++.|.||
T Consensus 191 g~~~~~q~l~~i~k~~~g~~~~-~~l~~v~FvPL 223 (223)
T d1r18a_ 191 GPDGGSQYMQQYDKDANGKVEM-TRLMGVMYVPL 223 (223)
T ss_dssp SCSSSCEEEEEEEECTTSCEEE-EEEEEECCCCC
T ss_pred ecCCCcEEEEEEEEeCCCcEEE-EEEeeEEeecC
Confidence 8777778899999988888888 89999999997
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.96 E-value=3.8e-29 Score=185.18 Aligned_cols=184 Identities=25% Similarity=0.389 Sum_probs=153.5
Q ss_pred Cccccccccccccc--CCccccccccc----cCCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCC
Q psy10572 1 MLRVDRKNFFTRVV--NEPYRIKSRQI----GYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGP 74 (204)
Q Consensus 1 ~~~~~~~~~~~~~~--~~~y~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~ 74 (204)
|..|||+.|+++.+ ..+|.|..+.. ..+..++.|.+.+.+++.+. ++++.+|||+|||+|+.+..+++..++
T Consensus 22 ~~~v~Re~Fv~~~~~~~~~~~d~~~~~~~~~~~~~~i~~P~~~a~~l~~l~--l~~g~~VLdiG~GtG~~s~~la~~~~~ 99 (213)
T d1dl5a1 22 FLEIPREEFLTKSYPLSYVYEDIVLVSYDDGEEYSTSSQPSLMALFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGE 99 (213)
T ss_dssp HHHSCGGGGCSSCCCHHHHTSSSCEEEEECSSCEEEECCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCT
T ss_pred HHcCCHHHcCCchhhhhhhccCcccCcccCCccceeeccchhhHHHHHhhh--ccccceEEEecCccchhHHHHHHHhCC
Confidence 46799999999887 56777777653 45577899999999999998 999999999999999999999998877
Q ss_pred CceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 75 EGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 75 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
.+.|+++|+++.+++.|+++++... ..++.++.+|....++..++||+|+++...+++++.+.+.|||||++++.
T Consensus 100 ~g~V~~id~~~~~~~~a~~~~~~~~-----~~n~~~~~~d~~~~~~~~~~fD~I~~~~~~~~~p~~l~~~LkpGG~lv~p 174 (213)
T d1dl5a1 100 KGLVVSVEYSRKICEIAKRNVERLG-----IENVIFVCGDGYYGVPEFSPYDVIFVTVGVDEVPETWFTQLKEGGRVIVP 174 (213)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHTT-----CCSEEEEESCGGGCCGGGCCEEEEEECSBBSCCCHHHHHHEEEEEEEEEE
T ss_pred CCcEEEeecchhhHHHhhhhHhhhc-----ccccccccCchHHccccccchhhhhhhccHHHhHHHHHHhcCCCcEEEEE
Confidence 8899999999999999999998743 56899999998877777788999999999999999999999999999998
Q ss_pred ecCCCCcceEEEEeecCCceEEEeeeeeeeeeeecccc
Q psy10572 155 VGEPFKGQNLTIIDKLADGYTIVTTVVRGVRTNPLYRD 192 (204)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~ 192 (204)
+.............+...+.+.. ..+..++|+|+.+.
T Consensus 175 v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Fvpl~g~ 211 (213)
T d1dl5a1 175 INLKLSRRQPAFLFKKKDPYLVG-NYKLETRFITAGGN 211 (213)
T ss_dssp BCBGGGTBCEEEEEEEETTEEEE-EEEEECCCCBCCGG
T ss_pred ECccCCcEEEEEEEEEeCCeEEE-EEEeeEEEEECCCC
Confidence 76554444444444444555555 78888999999764
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.96 E-value=6.5e-29 Score=184.28 Aligned_cols=176 Identities=26% Similarity=0.378 Sum_probs=153.3
Q ss_pred Cccccccccccccc-CCccccc--cccccCCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCce
Q psy10572 1 MLRVDRKNFFTRVV-NEPYRIK--SRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGR 77 (204)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~y~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~ 77 (204)
|.+|||+.|+|+.+ ..+|.|. +++++.+..++.+++.+.+++.+. ++++.+|||||||+|+++..+++..+ +
T Consensus 20 ~~~VpRe~Fvp~~~~~~AY~d~~~~l~i~~g~~~~~p~~~a~ml~~L~--l~~g~~VLdIG~GsGy~ta~La~l~~---~ 94 (224)
T d1vbfa_ 20 FNKVDRSLFLPENLKDYAYAHTHEALPILPGINTTALNLGIFMLDELD--LHKGQKVLEIGTGIGYYTALIAEIVD---K 94 (224)
T ss_dssp HHHSCHHHHSCGGGGGGSSSSTTCCEEEETTEEECCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHSS---E
T ss_pred HHcCcHHHcCChhhhhcCccCcccCcccCCCCceehhhhHHHHHHHhh--hcccceEEEecCCCCHHHHHHHHHhc---c
Confidence 46799999999998 8889775 477888999999999999999998 89999999999999999999998764 9
Q ss_pred EEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEEecC
Q psy10572 78 VYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 78 v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
|+++|.++.+++.|+++... ..|+.++.+|....+.+.++||.|++.+...++++.+.+.|+|||+|++.+..
T Consensus 95 V~aiE~~~~~~~~A~~~~~~-------~~nv~~~~~d~~~g~~~~~pfD~Iiv~~a~~~ip~~l~~qLk~GGrLV~pvg~ 167 (224)
T d1vbfa_ 95 VVSVEINEKMYNYASKLLSY-------YNNIKLILGDGTLGYEEEKPYDRVVVWATAPTLLCKPYEQLKEGGIMILPIGV 167 (224)
T ss_dssp EEEEESCHHHHHHHHHHHTT-------CSSEEEEESCGGGCCGGGCCEEEEEESSBBSSCCHHHHHTEEEEEEEEEEECS
T ss_pred cccccccHHHHHHHHHHHhc-------ccccccccCchhhcchhhhhHHHHHhhcchhhhhHHHHHhcCCCCEEEEEEcC
Confidence 99999999999999988765 35899999998877777789999999999999999999999999999998765
Q ss_pred CCCcceEEEEeecCCceEEEeeeeeeeeeeeccc
Q psy10572 158 PFKGQNLTIIDKLADGYTIVTTVVRGVRTNPLYR 191 (204)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~ 191 (204)
. ..+.+..+.+. +..+.. ..++++.|.|+.+
T Consensus 168 ~-~~q~l~~i~k~-~~~~~~-~~l~~v~F~pl~g 198 (224)
T d1vbfa_ 168 G-RVQKLYKVIKK-GNSPSL-ENLGEVMFGRIGG 198 (224)
T ss_dssp S-SSEEEEEEECC-TTSCEE-EEEEEECCCBCCS
T ss_pred C-CceEEEEEEEE-CCceEE-EEeeeEEEEECCC
Confidence 4 35666677664 455777 8889999999866
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.83 E-value=3.7e-20 Score=138.39 Aligned_cols=114 Identities=18% Similarity=0.234 Sum_probs=98.2
Q ss_pred hHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe
Q psy10572 34 PHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW 113 (204)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 113 (204)
++....+++.+. ++++.+|||+|||+|.++..+++.. .+++|+|+|+.+++.|+++....+ .+++.++++
T Consensus 2 ~~~~~~l~~~~~--~~~~~rILDiGcGtG~~~~~la~~~---~~v~gvD~S~~~l~~A~~~~~~~~-----~~~~~~~~~ 71 (234)
T d1xxla_ 2 HHSLGLMIKTAE--CRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKG-----VENVRFQQG 71 (234)
T ss_dssp HHHHHHHHHHHT--CCTTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHHT-----CCSEEEEEC
T ss_pred chHHHHHHHHhC--CCCCCEEEEeCCcCcHHHHHHHHhC---CeEEEEeCChhhhhhhhhhhcccc-----ccccccccc
Confidence 345667778887 8999999999999999999999875 389999999999999999987643 468999999
Q ss_pred cCCCCCCCCCCeeEEEECCCccc------hhHHHHHhcCCCcEEEEEecC
Q psy10572 114 NGKHGYEREAPYDIIHVSPSYFT------IPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 114 d~~~~~~~~~~~D~v~~~~~~~~------~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
|..+..+++++||+|++...+++ +++++.++|||||++++....
T Consensus 72 d~~~~~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~~~ 121 (234)
T d1xxla_ 72 TAESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHY 121 (234)
T ss_dssp BTTBCCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ccccccccccccceeeeeceeecccCHHHHHHHHHHeeCCCcEEEEEEcC
Confidence 98887778899999999988876 458999999999999986544
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.81 E-value=1.5e-19 Score=134.51 Aligned_cols=110 Identities=14% Similarity=0.281 Sum_probs=93.9
Q ss_pred HHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCC
Q psy10572 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKH 117 (204)
Q Consensus 38 ~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 117 (204)
..+++.+. ++++.+|||||||+|.++..+++.. ++++|+|+|+.+++.|++++...+ .+++++.++|+..
T Consensus 5 ~~ll~~~~--l~~~~rVLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~i~~A~~~~~~~~-----~~~i~~~~~d~~~ 74 (231)
T d1vl5a_ 5 AKLMQIAA--LKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKVARAFIEGNG-----HQQVEYVQGDAEQ 74 (231)
T ss_dssp HHHHHHHT--CCSCCEEEEETCTTCHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTT-----CCSEEEEECCC-C
T ss_pred HHHHHhcC--CCCcCEEEEecccCcHHHHHHHHhC---CEEEEEECCHHHHhhhhhcccccc-----ccccccccccccc
Confidence 45677776 8999999999999999999998875 389999999999999999987643 5789999999888
Q ss_pred CCCCCCCeeEEEECCCccc------hhHHHHHhcCCCcEEEEEecC
Q psy10572 118 GYEREAPYDIIHVSPSYFT------IPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 118 ~~~~~~~~D~v~~~~~~~~------~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
..++.++||+|++...+++ .++++.++|||||++++..+.
T Consensus 75 l~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~ 120 (231)
T d1vl5a_ 75 MPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNS 120 (231)
T ss_dssp CCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred ccccccccccccccccccccCCHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 7777889999999988876 458899999999999986543
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.79 E-value=9.8e-19 Score=131.87 Aligned_cols=131 Identities=25% Similarity=0.296 Sum_probs=111.7
Q ss_pred cccCCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCcccc
Q psy10572 24 QIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELL 103 (204)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ 103 (204)
...+...+..+.....++..+. ++|+.+|||+|||+|.++..+++..++.++++++|.++.+++.|+++++.... .
T Consensus 72 ~~~r~tqiiypkD~s~Ii~~l~--i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~--~ 147 (264)
T d1i9ga_ 72 SMPRGPQVIYPKDAAQIVHEGD--IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYG--Q 147 (264)
T ss_dssp TSCSCSCCCCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHT--S
T ss_pred hccCCccccchHHHHHHHHHhC--CCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhcc--C
Confidence 4556677778888889999998 99999999999999999999999988899999999999999999999876310 1
Q ss_pred CccceEEEEecCCCCCCCCCCeeEEEECCCccc-hhHHHHHhcCCCcEEEEEecCC
Q psy10572 104 DQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFT-IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 104 ~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~-~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
...++.+..+|+.+..+++++||.|+++.+.++ .+..+.++|||||++++.+++-
T Consensus 148 ~~~nv~~~~~d~~~~~~~~~~fDaV~ldlp~P~~~l~~~~~~LkpGG~lv~~~P~i 203 (264)
T d1i9ga_ 148 PPDNWRLVVSDLADSELPDGSVDRAVLDMLAPWEVLDAVSRLLVAGGVLMVYVATV 203 (264)
T ss_dssp CCTTEEEECSCGGGCCCCTTCEEEEEEESSCGGGGHHHHHHHEEEEEEEEEEESSH
T ss_pred CCceEEEEecccccccccCCCcceEEEecCCHHHHHHHHHhccCCCCEEEEEeCcc
Confidence 246899999998877777889999999877665 6689999999999998866654
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.79 E-value=1.1e-18 Score=129.15 Aligned_cols=111 Identities=18% Similarity=0.279 Sum_probs=91.6
Q ss_pred HHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCC
Q psy10572 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKH 117 (204)
Q Consensus 38 ~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 117 (204)
..+...+.++++++.+|||||||+|.++..+++.. .+++|+|+|+.+++.|+++..... .++.++.+|+..
T Consensus 25 ~~~~~~~~~~l~~~~~ILDiGcG~G~~~~~la~~~---~~v~giD~S~~~i~~ak~~~~~~~------~~~~~~~~d~~~ 95 (226)
T d1ve3a1 25 ETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYG---FEVVGVDISEDMIRKAREYAKSRE------SNVEFIVGDARK 95 (226)
T ss_dssp HHHHHHHHHSCCSCCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTT------CCCEEEECCTTS
T ss_pred HHHHHHHHHhcCCCCEEEEECCCcchhhhhHhhhh---cccccccccccchhhhhhhhcccc------cccccccccccc
Confidence 33444555567888999999999999999999854 499999999999999999876532 467888899888
Q ss_pred CCCCCCCeeEEEECCCccch--------hHHHHHhcCCCcEEEEEecC
Q psy10572 118 GYEREAPYDIIHVSPSYFTI--------PQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 118 ~~~~~~~~D~v~~~~~~~~~--------~~~~~~~Lk~gG~l~~~~~~ 157 (204)
...+.++||+|++..+++++ ++++.++|||||++++.+++
T Consensus 96 l~~~~~~fD~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~~ 143 (226)
T d1ve3a1 96 LSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD 143 (226)
T ss_dssp CCSCTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ccccCcCceEEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence 77778899999999888763 46888999999999988765
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.79 E-value=8e-19 Score=126.65 Aligned_cols=118 Identities=21% Similarity=0.248 Sum_probs=100.0
Q ss_pred cCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEE
Q psy10572 31 ISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQF 110 (204)
Q Consensus 31 ~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 110 (204)
.+..++...++..+. +.++.+|||+|||+|.+++.+++.. ++|+++|+++.+++.|+++++.++ ..+++++
T Consensus 16 ~t~~eir~~il~~l~--~~~g~~VLDiGcGsG~~s~~lA~~~---~~V~avD~~~~~l~~a~~n~~~~g----l~~~v~~ 86 (186)
T d1l3ia_ 16 PTAMEVRCLIMCLAE--PGKNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHG----LGDNVTL 86 (186)
T ss_dssp CCCHHHHHHHHHHHC--CCTTCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTT----CCTTEEE
T ss_pred CChHHHHHHHHHhcC--CCCCCEEEEEECCeEcccccccccc---eEEEEecCCHHHHHHHHHHHHHcC----CCcceEE
Confidence 467778888888887 8999999999999999999998764 399999999999999999998854 2358999
Q ss_pred EEecCCCCCCCCCCeeEEEECCCccc---hhHHHHHhcCCCcEEEEEecC
Q psy10572 111 VVWNGKHGYEREAPYDIIHVSPSYFT---IPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 111 ~~~d~~~~~~~~~~~D~v~~~~~~~~---~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
+++|+.+...+...||.|+++....+ +++.+.+.|||||++++....
T Consensus 87 ~~gda~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 136 (186)
T d1l3ia_ 87 MEGDAPEALCKIPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAIL 136 (186)
T ss_dssp EESCHHHHHTTSCCEEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEECB
T ss_pred EECchhhcccccCCcCEEEEeCccccchHHHHHHHHHhCcCCEEEEEeec
Confidence 99998766666678999999987654 567888999999999887643
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.78 E-value=1e-18 Score=130.95 Aligned_cols=127 Identities=20% Similarity=0.218 Sum_probs=94.3
Q ss_pred ccCCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccC
Q psy10572 25 IGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLD 104 (204)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~ 104 (204)
...+..+..+.-...++..+. ++|+.+|||+|||+|.++..+++..++.++++++|.++.+++.|+++++... .
T Consensus 62 ~~r~~qiiypkD~~~Ii~~l~--i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~----~ 135 (250)
T d1yb2a1 62 IRRNTQIISEIDASYIIMRCG--LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFY----D 135 (250)
T ss_dssp C------------------CC--CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTS----C
T ss_pred CCCCCcccCHHHHHHHHHHcC--CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhc----C
Confidence 344455545555666777776 8999999999999999999999998788899999999999999999998743 3
Q ss_pred ccceEEEEecCCCCCCCCCCeeEEEECCCccc-hhHHHHHhcCCCcEEEEEecCC
Q psy10572 105 QGRVQFVVWNGKHGYEREAPYDIIHVSPSYFT-IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 105 ~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~-~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
..++++..+|+.+. .++.+||.|+++.+.++ .++.+.++|||||++++.+++.
T Consensus 136 ~~nv~~~~~Di~~~-~~~~~fD~V~ld~p~p~~~l~~~~~~LKpGG~lv~~~P~i 189 (250)
T d1yb2a1 136 IGNVRTSRSDIADF-ISDQMYDAVIADIPDPWNHVQKIASMMKPGSVATFYLPNF 189 (250)
T ss_dssp CTTEEEECSCTTTC-CCSCCEEEEEECCSCGGGSHHHHHHTEEEEEEEEEEESSH
T ss_pred CCceEEEEeeeecc-cccceeeeeeecCCchHHHHHHHHHhcCCCceEEEEeCCc
Confidence 56899999998765 44578999999877655 6799999999999999877653
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.78 E-value=2.1e-18 Score=129.62 Aligned_cols=115 Identities=23% Similarity=0.298 Sum_probs=95.5
Q ss_pred ChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEE
Q psy10572 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVV 112 (204)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 112 (204)
.+.....+.+.+. +.|+.+|||||||+|..+..+++.. .++++|+|+|+.+++.|+++....+ ..++++++.
T Consensus 18 ~~~~~~~l~~~~~--l~pg~~VLDiGCG~G~~~~~la~~~--~~~v~GvD~s~~~~~~ar~~~~~~g----l~~~v~~~~ 89 (245)
T d1nkva_ 18 TEEKYATLGRVLR--MKPGTRILDLGSGSGEMLCTWARDH--GITGTGIDMSSLFTAQAKRRAEELG----VSERVHFIH 89 (245)
T ss_dssp CHHHHHHHHHHTC--CCTTCEEEEETCTTCHHHHHHHHHT--CCEEEEEESCHHHHHHHHHHHHHTT----CTTTEEEEE
T ss_pred CHHHHHHHHHHcC--CCCCCEEEEEcCCCCHHHHHHHHhc--CCEEEEEecccchhhHHHHHHHHhh----ccccchhhh
Confidence 5556666777776 8999999999999999999998875 2699999999999999999987754 235799999
Q ss_pred ecCCCCCCCCCCeeEEEECCCccc------hhHHHHHhcCCCcEEEEEec
Q psy10572 113 WNGKHGYEREAPYDIIHVSPSYFT------IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 113 ~d~~~~~~~~~~~D~v~~~~~~~~------~~~~~~~~Lk~gG~l~~~~~ 156 (204)
+|+.+. ...++||+|++...+.+ +++++.++|||||++++..+
T Consensus 90 ~d~~~~-~~~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~~ 138 (245)
T d1nkva_ 90 NDAAGY-VANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEP 138 (245)
T ss_dssp SCCTTC-CCSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred hHHhhc-cccCceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEEec
Confidence 998776 45688999999877765 45789999999999999754
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.76 E-value=6.1e-18 Score=129.56 Aligned_cols=103 Identities=16% Similarity=0.131 Sum_probs=88.9
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
++++.+|||||||+|.++..+++..+ ++|+|+|+|+.+++.|+++....+ ..++++++.+|+...+++.++||+
T Consensus 65 l~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~i~~a~~~~~~~g----l~~~v~~~~~d~~~l~~~~~sfD~ 138 (282)
T d2o57a1 65 LQRQAKGLDLGAGYGGAARFLVRKFG--VSIDCLNIAPVQNKRNEEYNNQAG----LADNITVKYGSFLEIPCEDNSYDF 138 (282)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHHHT----CTTTEEEEECCTTSCSSCTTCEEE
T ss_pred CCCCCEEEEeCCCCcHHHhhhhccCC--cEEEEEeccchhhhhhhccccccc----ccccccccccccccccccccccch
Confidence 57889999999999999999998753 589999999999999999987643 135899999999887777889999
Q ss_pred EEECCCccc------hhHHHHHhcCCCcEEEEEec
Q psy10572 128 IHVSPSYFT------IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 128 v~~~~~~~~------~~~~~~~~Lk~gG~l~~~~~ 156 (204)
|++...+.+ +++++.++|||||++++..+
T Consensus 139 V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~~~~ 173 (282)
T d2o57a1 139 IWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDP 173 (282)
T ss_dssp EEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhccchhhhccCHHHHHHHHHHhcCCCcEEEEEEe
Confidence 999888766 45799999999999998654
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.75 E-value=8.8e-18 Score=121.89 Aligned_cols=114 Identities=18% Similarity=0.198 Sum_probs=92.3
Q ss_pred HHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCC
Q psy10572 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGK 116 (204)
Q Consensus 37 ~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~ 116 (204)
...+++.+. +.++.+|||+|||+|.++..+++... +++++|+|+.+++.+++++..+. +...++++..+|..
T Consensus 41 t~lLi~~l~--~~~~~~VLDiGcG~G~~~~~la~~~~---~v~~iD~s~~~i~~a~~n~~~~~---l~~~~i~~~~~d~~ 112 (194)
T d1dusa_ 41 TKILVENVV--VDKDDDILDLGCGYGVIGIALADEVK---STTMADINRRAIKLAKENIKLNN---LDNYDIRVVHSDLY 112 (194)
T ss_dssp HHHHHHHCC--CCTTCEEEEETCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTT---CTTSCEEEEECSTT
T ss_pred HHHHHHhCC--cCCCCeEEEEeecCChhHHHHHhhcc---ccceeeeccccchhHHHHHHHhC---CccceEEEEEcchh
Confidence 344556555 67889999999999999999988653 89999999999999999988754 23357899999987
Q ss_pred CCCCCCCCeeEEEECCCccc-------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 117 HGYEREAPYDIIHVSPSYFT-------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 117 ~~~~~~~~~D~v~~~~~~~~-------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
+. .++++||+|+++.+++. +++.+.+.|+|||++++.+....
T Consensus 113 ~~-~~~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 161 (194)
T d1dusa_ 113 EN-VKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTKQ 161 (194)
T ss_dssp TT-CTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEESTH
T ss_pred hh-hccCCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEEEEeCcC
Confidence 64 45678999999988754 45778899999999988765553
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.74 E-value=8e-18 Score=127.57 Aligned_cols=140 Identities=17% Similarity=0.252 Sum_probs=114.2
Q ss_pred CCccccccccccCCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHH
Q psy10572 15 NEPYRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKN 94 (204)
Q Consensus 15 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~ 94 (204)
...|+...+....+..++.++....+-..+......+.+|||+|||+|..++.++... +..+++++|+|+.+++.|++|
T Consensus 73 ~~~F~~~~~~v~~~VlIPRpeTE~lv~~~l~~~~~~~~~vlDlGtGSG~I~i~la~~~-p~~~v~avDis~~Al~~A~~N 151 (274)
T d2b3ta1 73 VREFWSLPLFVSPATLIPRPDTECLVEQALARLPEQPCRILDLGTGTGAIALALASER-PDCEIIAVDRMPDAVSLAQRN 151 (274)
T ss_dssp EEEETTEEEECCTTSCCCCTTHHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHC-TTSEEEEECSSHHHHHHHHHH
T ss_pred cEEEeeeEEEEeccccccccchhhhhhhHhhhhcccccceeeeehhhhHHHHHHHhhC-CcceeeeccchhHHHhHHHHH
Confidence 4566777888899999999988766555555444666799999999999999999988 788999999999999999999
Q ss_pred hhhcCccccCccceEEEEecCCCCCCCCCCeeEEEECCCccc-------------------------------hhHHHHH
Q psy10572 95 IDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFT-------------------------------IPQKLLD 143 (204)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~-------------------------------~~~~~~~ 143 (204)
+..++ ..+++++++|+.... +..+||+|++|+++-. +++.+.+
T Consensus 152 a~~~~-----~~~v~~~~~d~~~~~-~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~ 225 (274)
T d2b3ta1 152 AQHLA-----IKNIHILQSDWFSAL-AGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRN 225 (274)
T ss_dssp HHHHT-----CCSEEEECCSTTGGG-TTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGG
T ss_pred HHHhC-----cccceeeeccccccc-CCCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHH
Confidence 98754 457999999987654 3468999999998721 2357778
Q ss_pred hcCCCcEEEEEecCCCCc
Q psy10572 144 QLVPGGRMVMPVGEPFKG 161 (204)
Q Consensus 144 ~Lk~gG~l~~~~~~~~~~ 161 (204)
+|+|||.+++.+...+..
T Consensus 226 ~L~~~G~l~lEig~~q~~ 243 (274)
T d2b3ta1 226 ALVSGGFLLLEHGWQQGE 243 (274)
T ss_dssp GEEEEEEEEEECCSSCHH
T ss_pred hcCCCCEEEEEECchHHH
Confidence 999999999988776543
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.73 E-value=3.8e-17 Score=123.67 Aligned_cols=128 Identities=27% Similarity=0.319 Sum_probs=107.2
Q ss_pred cccCCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCcccc
Q psy10572 24 QIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELL 103 (204)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ 103 (204)
....+..+..+.....++..+. ++|+.+|||+|||+|.++..+++..++.++++++|.++.+++.|+++++..+
T Consensus 79 ~~~r~~qiiypkd~~~Ii~~l~--i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g---- 152 (266)
T d1o54a_ 79 NMKRRTQIVYPKDSSFIAMMLD--VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWG---- 152 (266)
T ss_dssp TCCC-CCCCCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTT----
T ss_pred hccCCccccchHHHHHHHHhhC--CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhc----
Confidence 4455667777788888999898 9999999999999999999999998788899999999999999999998754
Q ss_pred CccceEEEEecCCCCCCCCCCeeEEEECCCccc-hhHHHHHhcCCCcEEEEEecCC
Q psy10572 104 DQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFT-IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 104 ~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~-~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
...++.+...|.... .....+|.|+.+.+.++ .++.+.++|||||++++.+++.
T Consensus 153 ~~~~v~~~~~d~~~~-~~~~~~D~V~~d~p~p~~~l~~~~~~LKpGG~lv~~~P~~ 207 (266)
T d1o54a_ 153 LIERVTIKVRDISEG-FDEKDVDALFLDVPDPWNYIDKCWEALKGGGRFATVCPTT 207 (266)
T ss_dssp CGGGEEEECCCGGGC-CSCCSEEEEEECCSCGGGTHHHHHHHEEEEEEEEEEESSH
T ss_pred cccCcEEEecccccc-ccccceeeeEecCCCHHHHHHHHHhhcCCCCEEEEEeCcc
Confidence 236788888886544 44578999999877665 7799999999999999877653
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.73 E-value=2.6e-17 Score=125.15 Aligned_cols=113 Identities=21% Similarity=0.307 Sum_probs=92.9
Q ss_pred HHHHHHHHhcc-CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecC
Q psy10572 37 HAQMLELLKDK-IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNG 115 (204)
Q Consensus 37 ~~~~~~~l~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~ 115 (204)
...+...+... ..++.+|||+|||+|.++..+++.. ++..++|+|+|+.+++.|+++. +++.+..+|+
T Consensus 70 ~~~~~~~l~~~~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~~giD~s~~~~~~a~~~~----------~~~~~~~~d~ 138 (268)
T d1p91a_ 70 RDAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADAL-PEITTFGLDVSKVAIKAAAKRY----------PQVTFCVASS 138 (268)
T ss_dssp HHHHHHHHHHHSCTTCCEEEEETCTTSTTHHHHHHTC-TTSEEEEEESCHHHHHHHHHHC----------TTSEEEECCT
T ss_pred HHHHHHHHHHhcCCCCCEEEEeCCCCcHHHHHHHHHC-CCCEEEEecchHhhhhhhhccc----------ccccceeeeh
Confidence 34444444433 3567899999999999999999987 6789999999999999998753 4789999999
Q ss_pred CCCCCCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEEecCCCCc
Q psy10572 116 KHGYEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPFKG 161 (204)
Q Consensus 116 ~~~~~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~~~~~~~ 161 (204)
....++.++||+|++.....+ ++++.++|||||++++++++....
T Consensus 139 ~~l~~~~~sfD~v~~~~~~~~-~~e~~rvLkpgG~l~~~~p~~~~l 183 (268)
T d1p91a_ 139 HRLPFSDTSMDAIIRIYAPCK-AEELARVVKPGGWVITATPGPRHL 183 (268)
T ss_dssp TSCSBCTTCEEEEEEESCCCC-HHHHHHHEEEEEEEEEEEECTTTT
T ss_pred hhccCCCCCEEEEeecCCHHH-HHHHHHHhCCCcEEEEEeeCCcch
Confidence 888888899999998877655 578999999999999999876533
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.73 E-value=5.3e-17 Score=120.28 Aligned_cols=116 Identities=15% Similarity=0.198 Sum_probs=90.9
Q ss_pred HHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhC-CCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEec
Q psy10572 36 IHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAG-PEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWN 114 (204)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d 114 (204)
+...+...+..+++++.+|||+|||+|..+..+++... +.++++|+|+|+.|++.|++++.... ...++.+..+|
T Consensus 25 ~~~~i~~~~~~~~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~----~~~~~~~~~~d 100 (225)
T d1im8a_ 25 IITAIGMLAERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH----SEIPVEILCND 100 (225)
T ss_dssp HHHHHHHHHHHHCCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSC----CSSCEEEECSC
T ss_pred HHHHHHHHHHHhcCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhc----ccchhhhccch
Confidence 34445555555678999999999999999999998652 56799999999999999999987633 23467788888
Q ss_pred CCCCCCCCCCeeEEEECCCccc--------hhHHHHHhcCCCcEEEEEecC
Q psy10572 115 GKHGYEREAPYDIIHVSPSYFT--------IPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 115 ~~~~~~~~~~~D~v~~~~~~~~--------~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
..+.. ...+|+|++...+++ +++++.+.|||||.+++....
T Consensus 101 ~~~~~--~~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~ 149 (225)
T d1im8a_ 101 IRHVE--IKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKF 149 (225)
T ss_dssp TTTCC--CCSEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hhccc--cccceeeEEeeeccccChhhHHHHHHHHHHhCCCCceeeccccc
Confidence 66543 357899998877654 468999999999999997544
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=8.2e-17 Score=124.78 Aligned_cols=134 Identities=21% Similarity=0.249 Sum_probs=106.0
Q ss_pred ccccCCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCcc-
Q psy10572 23 RQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSE- 101 (204)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~- 101 (204)
....++..+-.+.-...++..+. +.|+.+|||+|||+|.++..+++..+++++|+++|+++.+++.|+++++.....
T Consensus 73 ~~~~r~tqiiypkD~~~Il~~l~--i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~ 150 (324)
T d2b25a1 73 VLMKRGTAITFPKDINMILSMMD--INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSW 150 (324)
T ss_dssp HHSCCSSCCCCHHHHHHHHHHHT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred hccCCCCcccccccHHHHHHHhC--CCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhh
Confidence 34566677777788888999998 999999999999999999999999888899999999999999999998753210
Q ss_pred -----ccCccceEEEEecCCCCC--CCCCCeeEEEECCCccc-hhHHHHHhcCCCcEEEEEecCC
Q psy10572 102 -----LLDQGRVQFVVWNGKHGY--EREAPYDIIHVSPSYFT-IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 102 -----~~~~~~~~~~~~d~~~~~--~~~~~~D~v~~~~~~~~-~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
.....++.+.++|+.... .+...||.|+++.+.++ .+.++.++|||||++++.+++-
T Consensus 151 ~~~~~~~~~~nv~~~~~di~~~~~~~~~~~fD~V~LD~p~P~~~l~~~~~~LKpGG~lv~~~P~i 215 (324)
T d2b25a1 151 KLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHGGVCAVYVVNI 215 (324)
T ss_dssp TTTCSSCCCCCEEEEESCTTCCC-------EEEEEECSSSTTTTHHHHGGGEEEEEEEEEEESSH
T ss_pred hhhhhhccccceeEEecchhhcccccCCCCcceEeecCcCHHHHHHHHHHhccCCCEEEEEeCCH
Confidence 012368999999976543 34468999999876665 6799999999999999866543
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.71 E-value=4.1e-17 Score=122.43 Aligned_cols=112 Identities=14% Similarity=0.144 Sum_probs=87.0
Q ss_pred HHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecC
Q psy10572 36 IHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNG 115 (204)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~ 115 (204)
....+.+.+.....++.+|||+|||+|.++..+++... +++|+|+|+.|++.|+++....+ .+++++++|+
T Consensus 23 ~~~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~l~~~g~---~v~GvD~S~~ml~~A~~~~~~~~------~~v~~~~~d~ 93 (246)
T d1y8ca_ 23 WSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFK---NTWAVDLSQEMLSEAENKFRSQG------LKPRLACQDI 93 (246)
T ss_dssp HHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSS---EEEEECSCHHHHHHHHHHHHHTT------CCCEEECCCG
T ss_pred HHHHHHHHHHHhCCCCCeEEEEeCcCCHHHHHHHHhCC---ccEeeccchhhhhhccccccccC------ccceeeccch
Confidence 34455555554345567999999999999999998753 89999999999999999886633 3789999998
Q ss_pred CCCCCCCCCeeEEEECC-Cccc---------hhHHHHHhcCCCcEEEEEecC
Q psy10572 116 KHGYEREAPYDIIHVSP-SYFT---------IPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 116 ~~~~~~~~~~D~v~~~~-~~~~---------~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
..... .++||+|++.. .+.+ +++.+.++|+|||.+++.+.+
T Consensus 94 ~~~~~-~~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~ 144 (246)
T d1y8ca_ 94 SNLNI-NRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINS 144 (246)
T ss_dssp GGCCC-SCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred hhhcc-cccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEEeCC
Confidence 76544 46899999853 2222 457899999999999987654
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.71 E-value=1.5e-17 Score=124.95 Aligned_cols=109 Identities=23% Similarity=0.408 Sum_probs=87.2
Q ss_pred HHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecC
Q psy10572 36 IHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNG 115 (204)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~ 115 (204)
..+.+++.+....+++.+|||+|||+|.+++.+++.. ++|+|+|+|+.+++.|+++++.++ -+++++++|.
T Consensus 106 TT~l~l~~l~~~~~~g~~VLDiGcGsG~l~i~aa~~g---~~V~gvDis~~av~~A~~na~~n~------~~~~~~~~d~ 176 (254)
T d2nxca1 106 TTRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKLG---GKALGVDIDPMVLPQAEANAKRNG------VRPRFLEGSL 176 (254)
T ss_dssp HHHHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHTT---CEEEEEESCGGGHHHHHHHHHHTT------CCCEEEESCH
T ss_pred hhhHHHHHHHhhcCccCEEEEcccchhHHHHHHHhcC---CEEEEEECChHHHHHHHHHHHHcC------CceeEEeccc
Confidence 3445666666667899999999999999999888753 489999999999999999998754 2467888886
Q ss_pred CCCCCCCCCeeEEEECCCccc---hhHHHHHhcCCCcEEEEE
Q psy10572 116 KHGYEREAPYDIIHVSPSYFT---IPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 116 ~~~~~~~~~~D~v~~~~~~~~---~~~~~~~~Lk~gG~l~~~ 154 (204)
... .+.++||+|+++..... +.+.+.++|||||+++++
T Consensus 177 ~~~-~~~~~fD~V~ani~~~~l~~l~~~~~~~LkpGG~lilS 217 (254)
T d2nxca1 177 EAA-LPFGPFDLLVANLYAELHAALAPRYREALVPGGRALLT 217 (254)
T ss_dssp HHH-GGGCCEEEEEEECCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccc-ccccccchhhhccccccHHHHHHHHHHhcCCCcEEEEE
Confidence 543 34578999999866543 457888999999999985
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.71 E-value=6.2e-17 Score=121.94 Aligned_cols=106 Identities=21% Similarity=0.253 Sum_probs=86.3
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCC-CCCCe
Q psy10572 47 KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE-REAPY 125 (204)
Q Consensus 47 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~ 125 (204)
..+++.+|||+|||+|..+..+++.. .++|+|+|+|+.+++.|+.+..... ...++.+.++|+..... ..++|
T Consensus 21 ~~~~~~~VLDlGCG~G~~~~~~~~~~--~~~v~GiD~S~~~l~~A~~r~~~~~----~~~~v~f~~~D~~~~~~~~~~~f 94 (252)
T d1ri5a_ 21 YTKRGDSVLDLGCGKGGDLLKYERAG--IGEYYGVDIAEVSINDARVRARNMK----RRFKVFFRAQDSYGRHMDLGKEF 94 (252)
T ss_dssp HCCTTCEEEEETCTTTTTHHHHHHHT--CSEEEEEESCHHHHHHHHHHHHTSC----CSSEEEEEESCTTTSCCCCSSCE
T ss_pred hCCCcCEEEEecccCcHHHHHHHHcC--CCeEEEecCCHHHHHHHHHHHHhcC----CCcceEEEEcchhhhcccccccc
Confidence 36889999999999999998888864 2489999999999999999876532 13479999999865543 45789
Q ss_pred eEEEECCCccch----------hHHHHHhcCCCcEEEEEecCC
Q psy10572 126 DIIHVSPSYFTI----------PQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 126 D~v~~~~~~~~~----------~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
|+|++....+++ ++.+.++|||||++++++++.
T Consensus 95 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~~ 137 (252)
T d1ri5a_ 95 DVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSR 137 (252)
T ss_dssp EEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred eEEEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEecCH
Confidence 999999888763 367789999999999988764
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.70 E-value=9.1e-17 Score=120.65 Aligned_cols=100 Identities=19% Similarity=0.237 Sum_probs=82.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
..+..+|||+|||+|..+..+++.. .+++|+|+|+.+++.|++++.... .++++.++|+....++ ++||+
T Consensus 39 ~~~~~~iLDiGcGtG~~~~~l~~~~---~~v~gvD~s~~mi~~a~~~~~~~~------~~i~~~~~d~~~l~~~-~~fD~ 108 (251)
T d1wzna1 39 KREVRRVLDLACGTGIPTLELAERG---YEVVGLDLHEEMLRVARRKAKERN------LKIEFLQGDVLEIAFK-NEFDA 108 (251)
T ss_dssp SSCCCEEEEETCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTT------CCCEEEESCGGGCCCC-SCEEE
T ss_pred CCCCCEEEEeCCCCCccchhhcccc---eEEEEEeecccccccccccccccc------ccchheehhhhhcccc-cccch
Confidence 3566799999999999999999864 389999999999999999987633 3799999998776555 58999
Q ss_pred EEECC-Cccc--------hhHHHHHhcCCCcEEEEEecC
Q psy10572 128 IHVSP-SYFT--------IPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 128 v~~~~-~~~~--------~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
|++.. ...+ .++++.++|||||++++...+
T Consensus 109 I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~~~ 147 (251)
T d1wzna1 109 VTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPC 147 (251)
T ss_dssp EEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred HhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEecc
Confidence 99864 3322 457899999999999997654
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.70 E-value=5.6e-17 Score=121.23 Aligned_cols=106 Identities=19% Similarity=0.179 Sum_probs=83.4
Q ss_pred HHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC
Q psy10572 39 QMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG 118 (204)
Q Consensus 39 ~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~ 118 (204)
.+...+..+++++.+|||+|||+|.++..+++.. ++|+|+|+|+.+++.|+++... .++.+++.+.
T Consensus 31 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~giD~s~~~l~~a~~~~~~-----------~~~~~~~~~l 96 (246)
T d2avna1 31 LIGSFLEEYLKNPCRVLDLGGGTGKWSLFLQERG---FEVVLVDPSKEMLEVAREKGVK-----------NVVEAKAEDL 96 (246)
T ss_dssp HHHHHHHHHCCSCCEEEEETCTTCHHHHHHHTTT---CEEEEEESCHHHHHHHHHHTCS-----------CEEECCTTSC
T ss_pred HHHHHHHHhcCCCCEEEEECCCCchhcccccccc---eEEEEeeccccccccccccccc-----------cccccccccc
Confidence 3334444556788899999999999999998864 4999999999999999886421 2567887777
Q ss_pred CCCCCCeeEEEECC-Cccc------hhHHHHHhcCCCcEEEEEecCC
Q psy10572 119 YEREAPYDIIHVSP-SYFT------IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 119 ~~~~~~~D~v~~~~-~~~~------~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
.++.++||+|++.. ..++ +++++.++|||||.+++.+++.
T Consensus 97 ~~~~~~fD~ii~~~~~~~~~~d~~~~l~~i~r~Lk~gG~~ii~~~~~ 143 (246)
T d2avna1 97 PFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNF 143 (246)
T ss_dssp CSCTTCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred ccccccccceeeecchhhhhhhHHHHHHHHHhhcCcCcEEEEEECCH
Confidence 67778999999865 4443 4578899999999999988643
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.69 E-value=1.2e-16 Score=122.12 Aligned_cols=115 Identities=17% Similarity=0.207 Sum_probs=91.7
Q ss_pred HHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEec
Q psy10572 35 HIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWN 114 (204)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d 114 (204)
+....++..+. .+.++.+|||+|||+|.++..+++..+.+++++|+|+|+.+++.|++++...+ .++++..+|
T Consensus 13 d~l~~l~~~~~-~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~------~~~~f~~~d 85 (281)
T d2gh1a1 13 DYVSFLVNTVW-KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP------YDSEFLEGD 85 (281)
T ss_dssp HHHHHHHHTTS-CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSS------SEEEEEESC
T ss_pred HHHHHHHHHHh-ccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccc------ccccccccc
Confidence 33444444332 24667899999999999999999987545799999999999999999987632 378999999
Q ss_pred CCCCCCCCCCeeEEEECCCccc------hhHHHHHhcCCCcEEEEEecC
Q psy10572 115 GKHGYEREAPYDIIHVSPSYFT------IPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 115 ~~~~~~~~~~~D~v~~~~~~~~------~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
+....++ ++||+|++...+++ +++++.+.|||||.+++..+.
T Consensus 86 ~~~~~~~-~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~lii~~~~ 133 (281)
T d2gh1a1 86 ATEIELN-DKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPH 133 (281)
T ss_dssp TTTCCCS-SCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred ccccccc-CCceEEEEehhhhcCCCHHHHHHHHHHHcCcCcEEEEEECC
Confidence 8765544 57999999998876 458899999999999987754
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.69 E-value=3.3e-16 Score=113.75 Aligned_cols=100 Identities=16% Similarity=0.106 Sum_probs=83.2
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEE
Q psy10572 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIH 129 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 129 (204)
++.+|||+|||+|..+..++++. .+++|+|+|+.+++.++.+....+ .+++++...|+....+ .++||+|+
T Consensus 30 ~~grvLDiGcG~G~~~~~la~~g---~~v~gvD~s~~~l~~a~~~~~~~~-----~~~~~~~~~d~~~~~~-~~~fD~I~ 100 (198)
T d2i6ga1 30 APGRTLDLGCGNGRNSLYLAANG---YDVTAWDKNPASMANLERIKAAEG-----LDNLQTDLVDLNTLTF-DGEYDFIL 100 (198)
T ss_dssp CSCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTT-----CTTEEEEECCTTTCCC-CCCEEEEE
T ss_pred CCCcEEEECCCCCHHHHHHHHHh---hhhccccCcHHHHHHHHHHhhhcc-----ccchhhhheecccccc-cccccEEE
Confidence 34599999999999999999875 399999999999999998887633 4678999999776554 47899999
Q ss_pred ECCCccc--------hhHHHHHhcCCCcEEEEEecCC
Q psy10572 130 VSPSYFT--------IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 130 ~~~~~~~--------~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
+...+++ +++++.++|+|||++++.+...
T Consensus 101 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 137 (198)
T d2i6ga1 101 STVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAMD 137 (198)
T ss_dssp EESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEEBC
T ss_pred EeeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 9888765 4478889999999999976544
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=1.2e-16 Score=118.10 Aligned_cols=103 Identities=16% Similarity=0.130 Sum_probs=85.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEE
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDII 128 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 128 (204)
.++.+|||+|||+|..+..++.... .+|+|+|+|+.+++.|++++...+ ..++++.++|+.+..++.++||+|
T Consensus 59 ~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~l~~ak~~~~~~~-----~~~~~f~~~d~~~~~~~~~~fD~I 131 (222)
T d2ex4a1 59 TGTSCALDCGAGIGRITKRLLLPLF--REVDMVDITEDFLVQAKTYLGEEG-----KRVRNYFCCGLQDFTPEPDSYDVI 131 (222)
T ss_dssp CCCSEEEEETCTTTHHHHHTTTTTC--SEEEEEESCHHHHHHHHHHTGGGG-----GGEEEEEECCGGGCCCCSSCEEEE
T ss_pred CCCCEEEEeccCCCHhhHHHHHhcC--CEEEEeecCHHHhhcccccccccc-----cccccccccccccccccccccccc
Confidence 5667999999999999998876542 389999999999999999887632 457899999988776677899999
Q ss_pred EECCCccch--------hHHHHHhcCCCcEEEEEecCC
Q psy10572 129 HVSPSYFTI--------PQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 129 ~~~~~~~~~--------~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
++...++++ ++++.+.|+|||.+++..+..
T Consensus 132 ~~~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~ 169 (222)
T d2ex4a1 132 WIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMA 169 (222)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred ccccccccchhhhhhhHHHHHHHhcCCcceEEEEEccc
Confidence 999888764 467889999999999976543
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.67 E-value=2e-16 Score=117.11 Aligned_cols=109 Identities=18% Similarity=0.207 Sum_probs=86.1
Q ss_pred HHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCC
Q psy10572 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGK 116 (204)
Q Consensus 37 ~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~ 116 (204)
...+++.+.+.. .+.+|||||||+|.++..+++.. .+|+|+|+|+.+++.|+++.. .++.++.+++.
T Consensus 8 ~~~~~~~~~~~~-~~~~VLDiGcG~G~~~~~l~~~g---~~v~giD~s~~~i~~a~~~~~---------~~~~~~~~~~~ 74 (225)
T d2p7ia1 8 HPFMVRAFTPFF-RPGNLLELGSFKGDFTSRLQEHF---NDITCVEASEEAISHAQGRLK---------DGITYIHSRFE 74 (225)
T ss_dssp HHHHHHHHGGGC-CSSCEEEESCTTSHHHHHHTTTC---SCEEEEESCHHHHHHHHHHSC---------SCEEEEESCGG
T ss_pred HHHHHHHhhhhC-CCCcEEEEeCCCcHHHHHHHHcC---CeEEEEeCcHHHhhhhhcccc---------ccccccccccc
Confidence 345555565544 45589999999999999988765 389999999999999987743 36889999876
Q ss_pred CCCCCCCCeeEEEECCCccch------hHHHH-HhcCCCcEEEEEecCCC
Q psy10572 117 HGYEREAPYDIIHVSPSYFTI------PQKLL-DQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 117 ~~~~~~~~~D~v~~~~~~~~~------~~~~~-~~Lk~gG~l~~~~~~~~ 159 (204)
...+ +++||+|++...++++ +.++. ++|+|||.+++.+++..
T Consensus 75 ~~~~-~~~fD~I~~~~vleh~~d~~~~l~~i~~~~Lk~gG~l~i~~pn~~ 123 (225)
T d2p7ia1 75 DAQL-PRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNAN 123 (225)
T ss_dssp GCCC-SSCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEECTT
T ss_pred cccc-ccccccccccceeEecCCHHHHHHHHHHHhcCCCceEEEEeCCcc
Confidence 6544 4789999999988773 35666 78999999999987644
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.66 E-value=8.4e-16 Score=117.17 Aligned_cols=99 Identities=18% Similarity=0.201 Sum_probs=81.7
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
++++.+|||||||+|.++..+++..+ ++|+|+|+|+..++.|+++++..+ ...++.+...|.... .++||.
T Consensus 50 l~~g~~VLDiGCG~G~~a~~~a~~~g--~~v~gi~ls~~q~~~a~~~~~~~~----l~~~~~~~~~d~~~~---~~~fD~ 120 (280)
T d2fk8a1 50 LKPGMTLLDIGCGWGTTMRRAVERFD--VNVIGLTLSKNQHARCEQVLASID----TNRSRQVLLQGWEDF---AEPVDR 120 (280)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHTSC----CSSCEEEEESCGGGC---CCCCSE
T ss_pred CCCCCEEEEecCCchHHHHHHHHhCc--eeEEEecchHHHHHHHHHHHHhhc----cccchhhhhhhhhhh---ccchhh
Confidence 68999999999999999999998863 599999999999999999987744 134677777775433 368999
Q ss_pred EEECCCccc--------hhHHHHHhcCCCcEEEEEe
Q psy10572 128 IHVSPSYFT--------IPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 128 v~~~~~~~~--------~~~~~~~~Lk~gG~l~~~~ 155 (204)
|++...+.+ +++++.++|||||++++..
T Consensus 121 i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~ 156 (280)
T d2fk8a1 121 IVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQS 156 (280)
T ss_dssp EEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred hhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEE
Confidence 999888765 3578899999999999854
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.65 E-value=1.2e-15 Score=116.67 Aligned_cols=110 Identities=20% Similarity=0.219 Sum_probs=87.5
Q ss_pred HHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCC
Q psy10572 37 HAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGK 116 (204)
Q Consensus 37 ~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~ 116 (204)
...+++.+. ++++.+|||||||.|.++..+++..+ ++++|+++|+..++.++.+....+ ....+.+...|..
T Consensus 50 ~~~~~~~l~--l~~G~~VLDiGCG~G~~~~~~a~~~g--~~v~git~s~~q~~~a~~~~~~~~----l~~~v~~~~~d~~ 121 (291)
T d1kpia_ 50 RKLALDKLN--LEPGMTLLDIGCGWGSTMRHAVAEYD--VNVIGLTLSENQYAHDKAMFDEVD----SPRRKEVRIQGWE 121 (291)
T ss_dssp HHHHHHTTC--CCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHHSC----CSSCEEEEECCGG
T ss_pred HHHHHHhcC--CCCCCEEEEecCcchHHHHHHHHhcC--cceeeccchHHHHHHHHHHHHhhc----cchhhhhhhhccc
Confidence 334444444 68999999999999999999998874 699999999999999999987744 2346777777743
Q ss_pred CCCCCCCCeeEEEECCCccc---------------hhHHHHHhcCCCcEEEEEecC
Q psy10572 117 HGYEREAPYDIIHVSPSYFT---------------IPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 117 ~~~~~~~~~D~v~~~~~~~~---------------~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
..+++||.|++...+.+ +++++.++|||||++++.+..
T Consensus 122 ---~~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~ 174 (291)
T d1kpia_ 122 ---EFDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTIT 174 (291)
T ss_dssp ---GCCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEE
T ss_pred ---ccccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEe
Confidence 33478999999887765 457899999999999986643
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.65 E-value=1.2e-15 Score=114.96 Aligned_cols=101 Identities=18% Similarity=0.193 Sum_probs=83.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEE
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDII 128 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 128 (204)
.+..+|||+|||+|.++..++.... ..|+++|+++.+++.|+++... .+++++.++|+....++.++||+|
T Consensus 92 ~~~~~vLD~GcG~G~~t~~ll~~~~--~~v~~vD~s~~~l~~a~~~~~~-------~~~~~~~~~d~~~~~~~~~~fD~I 162 (254)
T d1xtpa_ 92 HGTSRALDCGAGIGRITKNLLTKLY--ATTDLLEPVKHMLEEAKRELAG-------MPVGKFILASMETATLPPNTYDLI 162 (254)
T ss_dssp CCCSEEEEETCTTTHHHHHTHHHHC--SEEEEEESCHHHHHHHHHHTTT-------SSEEEEEESCGGGCCCCSSCEEEE
T ss_pred CCCCeEEEecccCChhhHHHHhhcC--ceEEEEcCCHHHHHhhhccccc-------cccceeEEccccccccCCCccceE
Confidence 4667999999999999998876542 2899999999999999988754 346899999987766667899999
Q ss_pred EECCCccch--------hHHHHHhcCCCcEEEEEecCC
Q psy10572 129 HVSPSYFTI--------PQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 129 ~~~~~~~~~--------~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
++..+++++ ++++.+.|+|||.+++.....
T Consensus 163 ~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~ 200 (254)
T d1xtpa_ 163 VIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCS 200 (254)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred EeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCC
Confidence 999988774 468889999999999966433
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.64 E-value=7.9e-16 Score=111.97 Aligned_cols=101 Identities=12% Similarity=0.181 Sum_probs=86.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC--CCCCCee
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY--EREAPYD 126 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D 126 (204)
++...|||||||+|..+..+++.. |+..++|+|+++.++..+.++....+ ..|+.++.+|+.... ++.+++|
T Consensus 28 ~~~PlvLeIGcG~G~~~~~lA~~~-p~~~~iGiD~~~~~i~~a~~~~~~~~-----l~Nv~~~~~Da~~l~~~~~~~~~d 101 (204)
T d2fcaa1 28 NDNPIHIEVGTGKGQFISGMAKQN-PDINYIGIELFKSVIVTAVQKVKDSE-----AQNVKLLNIDADTLTDVFEPGEVK 101 (204)
T ss_dssp SCCCEEEEECCTTSHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHSC-----CSSEEEECCCGGGHHHHCCTTSCC
T ss_pred CCCceEEEEEecCcHHHHHHHHhC-CCCcEEEeecchHHHHHHHHHHHHHh-----ccCchhcccchhhhhcccCchhhh
Confidence 456689999999999999999997 88899999999999999999987744 579999999976432 5668899
Q ss_pred EEEECCCccc--------------hhHHHHHhcCCCcEEEEEe
Q psy10572 127 IIHVSPSYFT--------------IPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 127 ~v~~~~~~~~--------------~~~~~~~~Lk~gG~l~~~~ 155 (204)
.|++..+.++ +++.+.++|||||.|++.+
T Consensus 102 ~v~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T 144 (204)
T d2fcaa1 102 RVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 144 (204)
T ss_dssp EEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred ccccccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 9988876643 5688999999999999876
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.64 E-value=1.7e-15 Score=115.51 Aligned_cols=108 Identities=17% Similarity=0.147 Sum_probs=88.1
Q ss_pred HHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCC
Q psy10572 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKH 117 (204)
Q Consensus 38 ~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 117 (204)
..+++.+. ++++.+|||||||.|.++..+++..+ ++|+|+++|+..++.|++++...+ ...++++..+|...
T Consensus 52 ~~~~~~l~--l~~G~~VLDiGCG~G~~a~~~a~~~g--~~v~git~s~~Q~~~a~~~~~~~g----~~~~v~~~~~d~~~ 123 (285)
T d1kpga_ 52 DLALGKLG--LQPGMTLLDVGCGWGATMMRAVEKYD--VNVVGLTLSKNQANHVQQLVANSE----NLRSKRVLLAGWEQ 123 (285)
T ss_dssp HHHHTTTT--CCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHTCC----CCSCEEEEESCGGG
T ss_pred HHHHHHcC--CCCCCEEEEecCcchHHHHHHHhcCC--cceEEEeccHHHHHHHHHHHHhhh----hhhhhHHHHhhhhc
Confidence 33444443 68999999999999999999999873 799999999999999999987644 35689999998655
Q ss_pred CCCCCCCeeEEEECCCccc--------hhHHHHHhcCCCcEEEEEec
Q psy10572 118 GYEREAPYDIIHVSPSYFT--------IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 118 ~~~~~~~~D~v~~~~~~~~--------~~~~~~~~Lk~gG~l~~~~~ 156 (204)
. +++||.|++...+.+ +++++.++|||||++++.+.
T Consensus 124 ~---~~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i 167 (285)
T d1kpga_ 124 F---DEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTI 167 (285)
T ss_dssp C---CCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred c---cccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEE
Confidence 4 268999999877765 45789999999999998554
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.63 E-value=9.7e-16 Score=110.67 Aligned_cols=119 Identities=13% Similarity=0.001 Sum_probs=88.1
Q ss_pred hHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCcc-------ccCcc
Q psy10572 34 PHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSE-------LLDQG 106 (204)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-------~~~~~ 106 (204)
+.+.+ .+..+. +.++.+|||+|||+|..+..++++. .+|+|+|+|+.+++.|+++....... .....
T Consensus 7 ~~~~~-~~~~l~--~~~~~rvLd~GCG~G~~a~~la~~G---~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~ 80 (201)
T d1pjza_ 7 KDLQQ-YWSSLN--VVPGARVLVPLCGKSQDMSWLSGQG---YHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAP 80 (201)
T ss_dssp HHHHH-HHHHHC--CCTTCEEEETTTCCSHHHHHHHHHC---CEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECS
T ss_pred HHHHH-HHHHcC--CCCCCEEEEecCcCCHHHHHHHHcC---CceEeecccHHHHHHHHHHhccccchhhhhhhhhcccc
Confidence 34443 345555 7899999999999999999999975 49999999999999999987542210 00124
Q ss_pred ceEEEEecCCCCCC-CCCCeeEEEECCCccc--------hhHHHHHhcCCCcEEEEEecCC
Q psy10572 107 RVQFVVWNGKHGYE-REAPYDIIHVSPSYFT--------IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 107 ~~~~~~~d~~~~~~-~~~~~D~v~~~~~~~~--------~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
++.+..+|...... ....||+|++...+.+ ..+.+.++|||||.+++.....
T Consensus 81 ~~~~~~~d~~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~ 141 (201)
T d1pjza_ 81 GIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEY 141 (201)
T ss_dssp SSEEEEECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESS
T ss_pred ccceecccccccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEccc
Confidence 56788888765442 2367999999877765 3478889999999988766443
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.62 E-value=1.5e-15 Score=110.89 Aligned_cols=93 Identities=19% Similarity=0.242 Sum_probs=78.3
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
+.++.+|||||||+|.++..+. +++|+|+|+.+++.++++ ++.++++|+.+...++++||+
T Consensus 34 ~~~~~~vLDiGcG~G~~~~~~~-------~~~giD~s~~~~~~a~~~------------~~~~~~~d~~~l~~~~~~fD~ 94 (208)
T d1vlma_ 34 LLPEGRGVEIGVGTGRFAVPLK-------IKIGVEPSERMAEIARKR------------GVFVLKGTAENLPLKDESFDF 94 (208)
T ss_dssp HCCSSCEEEETCTTSTTHHHHT-------CCEEEESCHHHHHHHHHT------------TCEEEECBTTBCCSCTTCEEE
T ss_pred hCCCCeEEEECCCCcccccccc-------eEEEEeCChhhccccccc------------ccccccccccccccccccccc
Confidence 3567799999999998876542 578999999999998763 578999998877777789999
Q ss_pred EEECCCccc------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 128 IHVSPSYFT------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 128 v~~~~~~~~------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
|++...+++ +++++.++|+|||.+++.+++..
T Consensus 95 I~~~~~l~h~~d~~~~l~~~~~~L~pgG~l~i~~~~~~ 132 (208)
T d1vlma_ 95 ALMVTTICFVDDPERALKEAYRILKKGGYLIVGIVDRE 132 (208)
T ss_dssp EEEESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEECSS
T ss_pred cccccccccccccccchhhhhhcCCCCceEEEEecCCc
Confidence 999988877 45789999999999999887665
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.62 E-value=2.9e-15 Score=109.44 Aligned_cols=101 Identities=19% Similarity=0.259 Sum_probs=81.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCC---CCC
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYER---EAP 124 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~ 124 (204)
++|+.+|||+|||+|..+..+++.. +.++|+|+|+++.+++.++++.+. .+++.++.+|....... ...
T Consensus 54 lkpg~~VLDlGcG~G~~~~~la~~v-~~g~V~gvDis~~~i~~a~~~a~~-------~~ni~~i~~d~~~~~~~~~~~~~ 125 (209)
T d1nt2a_ 54 LRGDERVLYLGAASGTTVSHLADIV-DEGIIYAVEYSAKPFEKLLELVRE-------RNNIIPLLFDASKPWKYSGIVEK 125 (209)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHT-TTSEEEEECCCHHHHHHHHHHHHH-------CSSEEEECSCTTCGGGTTTTCCC
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHhc-cCCeEEEEeCCHHHHHHHHHHhhc-------cCCceEEEeeccCccccccccce
Confidence 6899999999999999999999998 667999999999999999998876 24899999987643322 245
Q ss_pred eeEEEECCCccc----hhHHHHHhcCCCcEEEEEec
Q psy10572 125 YDIIHVSPSYFT----IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 125 ~D~v~~~~~~~~----~~~~~~~~Lk~gG~l~~~~~ 156 (204)
+|+|+.+..... ++.++.+.|||||.+++...
T Consensus 126 vd~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 161 (209)
T d1nt2a_ 126 VDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMVK 161 (209)
T ss_dssp EEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEEEecccChhhHHHHHHHHHHHhccCCeEEEEEE
Confidence 777766644433 56788899999999998763
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=4.1e-15 Score=110.29 Aligned_cols=123 Identities=15% Similarity=0.050 Sum_probs=92.7
Q ss_pred cCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCcc---------
Q psy10572 31 ISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSE--------- 101 (204)
Q Consensus 31 ~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~--------- 101 (204)
-..+.+...+.+.+. +.++.+|||+|||+|..+..+++.. .+|+|+|+|+.+++.|++........
T Consensus 28 ~~~~~l~~~~~~~l~--~~~~~rvLd~GCG~G~~a~~LA~~G---~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~ 102 (229)
T d2bzga1 28 QGHQLLKKHLDTFLK--GKSGLRVFFPLCGKAVEMKWFADRG---HSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGT 102 (229)
T ss_dssp TCCHHHHHHHHHHHT--TCCSCEEEETTCTTCTHHHHHHHTT---CEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTC
T ss_pred CCCHHHHHHHHHhcC--CCCCCEEEEeCCCCcHHHHHHHhCC---CcEEEEeCCHHHHHHHHHHhhccccccchhccccc
Confidence 345656666666665 6788899999999999999999964 49999999999999998876431100
Q ss_pred ---ccCccceEEEEecCCCCC-CCCCCeeEEEECCCccc--------hhHHHHHhcCCCcEEEEEecCC
Q psy10572 102 ---LLDQGRVQFVVWNGKHGY-EREAPYDIIHVSPSYFT--------IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 102 ---~~~~~~~~~~~~d~~~~~-~~~~~~D~v~~~~~~~~--------~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
.....++++.++|+.... ...+.||+|+....+++ ..+.+.++|||||.+++.+...
T Consensus 103 ~~~~~~~~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~ 171 (229)
T d2bzga1 103 KVFKSSSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSY 171 (229)
T ss_dssp EEEEETTSSEEEEESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEEC
T ss_pred ceeeecCCcEEEEEcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEccc
Confidence 012357889999976543 34578999998877765 3478899999999988876543
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.61 E-value=7.5e-15 Score=106.71 Aligned_cols=102 Identities=13% Similarity=0.177 Sum_probs=86.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC--CCCCCCee
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG--YEREAPYD 126 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D 126 (204)
+....|||||||+|..+..+++.. |+..++|+|+++.++..|..++...+ .+|+.++.+|+... .++..++|
T Consensus 30 ~~~plvLdIGcG~G~~~~~lA~~~-p~~~~iGid~~~~~v~~a~~~~~~~~-----l~Ni~~~~~da~~l~~~~~~~~~~ 103 (204)
T d1yzha1 30 NDNPIHVEVGSGKGAFVSGMAKQN-PDINYIGIDIQKSVLSYALDKVLEVG-----VPNIKLLWVDGSDLTDYFEDGEID 103 (204)
T ss_dssp SCCCEEEEESCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHHC-----CSSEEEEECCSSCGGGTSCTTCCS
T ss_pred CCCCeEEEEeccCCHHHHHHHHHC-CCCceEEEeccHHHHHHHHHhhhhhc-----cccceeeecCHHHHhhhccCCcee
Confidence 455689999999999999999998 78899999999999999988887643 57999999997653 35668899
Q ss_pred EEEECCCccc--------------hhHHHHHhcCCCcEEEEEec
Q psy10572 127 IIHVSPSYFT--------------IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 127 ~v~~~~~~~~--------------~~~~~~~~Lk~gG~l~~~~~ 156 (204)
.|+++.+.++ +++.+.+.|||||.|++.+-
T Consensus 104 ~i~i~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD 147 (204)
T d1yzha1 104 RLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTD 147 (204)
T ss_dssp EEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEES
T ss_pred hhcccccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEEC
Confidence 9998877653 56789999999999998763
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.60 E-value=6.5e-15 Score=108.65 Aligned_cols=103 Identities=19% Similarity=0.295 Sum_probs=84.9
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC---CCCCCC
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG---YEREAP 124 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~ 124 (204)
++|+.+|||+|||+|..+..+++..++.+.|+|+|+++.+++.++.+++. ..++..+..|.... ......
T Consensus 71 i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~-------~~~~~~i~~d~~~~~~~~~~~~~ 143 (227)
T d1g8aa_ 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEE-------RRNIVPILGDATKPEEYRALVPK 143 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSS-------CTTEEEEECCTTCGGGGTTTCCC
T ss_pred cCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHh-------cCCceEEEEECCCcccccccccc
Confidence 58999999999999999999999988889999999999999999988765 24677778776532 123367
Q ss_pred eeEEEECCCccc----hhHHHHHhcCCCcEEEEEecC
Q psy10572 125 YDIIHVSPSYFT----IPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 125 ~D~v~~~~~~~~----~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
+|+|+.+..... ++.++.+.|||||++++++..
T Consensus 144 vD~i~~d~~~~~~~~~~l~~~~~~LkpgG~lvi~~ka 180 (227)
T d1g8aa_ 144 VDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIAVKS 180 (227)
T ss_dssp EEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred eEEEEEEccccchHHHHHHHHHHhcccCCeEEEEEEC
Confidence 999998866554 568888999999999997643
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.58 E-value=6.2e-15 Score=109.12 Aligned_cols=101 Identities=15% Similarity=0.183 Sum_probs=78.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC-CCCCCee
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-EREAPYD 126 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D 126 (204)
++|+.+|||+|||+|..+..+++.. +.+.|+|+|+|+.+++.++.++.. .+++..+.+|..... .....+|
T Consensus 72 ikpG~~VLDlGcGsG~~~~~la~~~-~~g~V~aVDiS~~~i~~a~~~a~~-------~~ni~~i~~d~~~~~~~~~~~~~ 143 (230)
T d1g8sa_ 72 IKRDSKILYLGASAGTTPSHVADIA-DKGIVYAIEYAPRIMRELLDACAE-------RENIIPILGDANKPQEYANIVEK 143 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHT-TTSEEEEEESCHHHHHHHHHHTTT-------CTTEEEEECCTTCGGGGTTTCCC
T ss_pred CCCCCEEEEeCEEcCHHHHHHHHhC-CCCEEEEEeCcHHHHHHHHHHHhh-------hcccceEEEeeccCcccccccce
Confidence 5889999999999999999999986 778999999999999999988765 357778888866432 2233455
Q ss_pred EEEECCCccc------hhHHHHHhcCCCcEEEEEec
Q psy10572 127 IIHVSPSYFT------IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 127 ~v~~~~~~~~------~~~~~~~~Lk~gG~l~~~~~ 156 (204)
++++....++ ++.++.+.|||||.+++...
T Consensus 144 v~~i~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~k 179 (230)
T d1g8sa_ 144 VDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIK 179 (230)
T ss_dssp EEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eEEeeccccchHHHHHHHHHHHHhcccCceEEEEee
Confidence 5444333332 45788899999999998764
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.57 E-value=1.9e-14 Score=108.15 Aligned_cols=101 Identities=22% Similarity=0.247 Sum_probs=83.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
..+..+|||||||+|..+..+++.. ++.+++++|+ +.+++.+++++...+ ...+++++.+|+.+..+ .+||+
T Consensus 78 ~~~~~~VLDvGcG~G~~~~~la~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~----~~~rv~~~~~D~~~~~~--~~~D~ 149 (253)
T d1tw3a2 78 WTNVRHVLDVGGGKGGFAAAIARRA-PHVSATVLEM-AGTVDTARSYLKDEG----LSDRVDVVEGDFFEPLP--RKADA 149 (253)
T ss_dssp CTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-TTHHHHHHHHHHHTT----CTTTEEEEECCTTSCCS--SCEEE
T ss_pred CccCCEEEEeCCCCCHHHHHHHHhc-ceeEEEEccC-HHHHHHHHHHHHHhh----cccchhhccccchhhcc--cchhh
Confidence 4566899999999999999999998 7889999997 678999999887643 24689999999765433 46999
Q ss_pred EEECCCccc--------hhHHHHHhcCCCcEEEEEec
Q psy10572 128 IHVSPSYFT--------IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 128 v~~~~~~~~--------~~~~~~~~Lk~gG~l~~~~~ 156 (204)
|++...+++ +++++.++|||||++++...
T Consensus 150 v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~ 186 (253)
T d1tw3a2 150 IILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHER 186 (253)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred eeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEec
Confidence 999988875 35788899999999998654
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=4.7e-15 Score=109.96 Aligned_cols=99 Identities=14% Similarity=0.095 Sum_probs=76.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCC--CCCCCCCCe
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGK--HGYEREAPY 125 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~~ 125 (204)
..++.+|||||||+|..+..+++.. ..+++++|+|+.+++.|+++..... .++.++..++. ....+.++|
T Consensus 51 ~~~g~~VLdIGcG~G~~a~~~a~~~--~~~v~~id~s~~~~~~a~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~f 122 (229)
T d1zx0a1 51 SSKGGRVLEVGFGMAIAASKVQEAP--IDEHWIIECNDGVFQRLRDWAPRQT------HKVIPLKGLWEDVAPTLPDGHF 122 (229)
T ss_dssp TTTCEEEEEECCTTSHHHHHHHTSC--EEEEEEEECCHHHHHHHHHHGGGCS------SEEEEEESCHHHHGGGSCTTCE
T ss_pred ccCCCeEEEeeccchHHHHHHHHcC--CCeEEEeCCCHHHHHHHHHHhhhcc------cccccccccccccccccccccc
Confidence 4678899999999999999998864 2489999999999999999987632 45677776654 223456789
Q ss_pred eEEEECCCcc-----c------hhHHHHHhcCCCcEEEEE
Q psy10572 126 DIIHVSPSYF-----T------IPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 126 D~v~~~~~~~-----~------~~~~~~~~Lk~gG~l~~~ 154 (204)
|.|+.+.... + +++.+.++|||||+|++.
T Consensus 123 D~i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~ 162 (229)
T d1zx0a1 123 DGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC 162 (229)
T ss_dssp EEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred cceeecccccccccccccCHHHHHHHHHHHcCCCcEEEEE
Confidence 9998765432 1 446788999999999773
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=99.53 E-value=2e-14 Score=101.77 Aligned_cols=135 Identities=18% Similarity=0.154 Sum_probs=94.2
Q ss_pred cccccccccCCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhh
Q psy10572 18 YRIKSRQIGYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97 (204)
Q Consensus 18 y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~ 97 (204)
|....+..+.+...+...+.+.+..++...+..+.+|||+|||+|.+++.++.+. ++++++|.++.+++.++++++.
T Consensus 9 ~kg~~l~~~~~~Rpt~~~v~e~lf~~l~~~~~~g~~vLDl~~G~G~~~i~a~~~g---a~vv~vD~~~~a~~~~~~N~~~ 85 (171)
T d1ws6a1 9 ARGVALKVPASARPSPVRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEG---WEAVLVEKDPEAVRLLKENVRR 85 (171)
T ss_dssp GTTCEECCCTTCCCCCHHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTT---CEEEEECCCHHHHHHHHHHHHH
T ss_pred ccCCEeCCCCCCCCCcHHHHHHHHHHhhccccCCCeEEEeccccchhhhhhhhcc---chhhhcccCHHHHhhhhHHHHh
Confidence 3334444444455556666677777777667888999999999999999888864 3899999999999999999987
Q ss_pred cCccccCccceEEEEecCC--CCCCCCCCeeEEEECCCccc----hhHHHH--HhcCCCcEEEEEecCCC
Q psy10572 98 GNSELLDQGRVQFVVWNGK--HGYEREAPYDIIHVSPSYFT----IPQKLL--DQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 98 ~~~~~~~~~~~~~~~~d~~--~~~~~~~~~D~v~~~~~~~~----~~~~~~--~~Lk~gG~l~~~~~~~~ 159 (204)
++. ..++.....|.. .......+||+|++++|+.. .+..+. .+|+|||++++......
T Consensus 86 ~~~----~~~v~~~~~d~~~~~~~~~~~~fD~If~DPPY~~~~~~~l~~l~~~~ll~~~g~ivie~~~~~ 151 (171)
T d1ws6a1 86 TGL----GARVVALPVEVFLPEAKAQGERFTVAFMAPPYAMDLAALFGELLASGLVEAGGLYVLQHPKDL 151 (171)
T ss_dssp HTC----CCEEECSCHHHHHHHHHHTTCCEEEEEECCCTTSCTTHHHHHHHHHTCEEEEEEEEEEEETTS
T ss_pred hcc----ccceeeeehhcccccccccCCccceeEEccccccCHHHHHHHHHHcCCcCCCeEEEEEecCCC
Confidence 541 123333333321 11133467999999998643 333333 46999999999876554
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.53 E-value=3.1e-14 Score=109.11 Aligned_cols=116 Identities=18% Similarity=0.173 Sum_probs=81.3
Q ss_pred HHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecC
Q psy10572 36 IHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNG 115 (204)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~ 115 (204)
....+.+.+. ..++.+|||+|||+|.++..+++.. .+|+|+|+|+.+++.|+++....... .......+...++
T Consensus 44 ~~~~l~~~l~--~~~~~~vLD~GcG~G~~~~~la~~g---~~v~gvD~S~~ml~~A~~~~~~~~~~-~~~~~~~~~~~~~ 117 (292)
T d1xvaa_ 44 YKAWLLGLLR--QHGCHRVLDVACGTGVDSIMLVEEG---FSVTSVDASDKMLKYALKERWNRRKE-PAFDKWVIEEANW 117 (292)
T ss_dssp HHHHHHHHHH--HTTCCEEEESSCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTTS-HHHHTCEEEECCG
T ss_pred HHHHHHHHhh--hcCCCEEEEecCCCcHHHHHHHHcC---CeeeeccCchHHHHHHHHHHHhcccc-cccceeeeeeccc
Confidence 3444555555 3567799999999999999999864 48999999999999999987653211 0112344445554
Q ss_pred CC---CCCCCCCeeEEEECC-Cccc-------------hhHHHHHhcCCCcEEEEEecC
Q psy10572 116 KH---GYEREAPYDIIHVSP-SYFT-------------IPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 116 ~~---~~~~~~~~D~v~~~~-~~~~-------------~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
.. ..+...+||.|++.. .+.+ +++++.++|||||+|++.+.+
T Consensus 118 ~~~~~~~~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 176 (292)
T d1xvaa_ 118 LTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN 176 (292)
T ss_dssp GGHHHHSCCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred cccccccCCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeecC
Confidence 32 123346799998754 3332 568999999999999997653
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=99.52 E-value=1.2e-13 Score=104.06 Aligned_cols=141 Identities=17% Similarity=0.158 Sum_probs=105.5
Q ss_pred CCccccccccccCCcccCChHHHHHHHHHHhcc-CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHH
Q psy10572 15 NEPYRIKSRQIGYGADISSPHIHAQMLELLKDK-IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIK 93 (204)
Q Consensus 15 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~ 93 (204)
...|+...+....+..++.++....+-..+... ..+...++|+|||+|..+..+++. +.++|+++|+|+.+++.|++
T Consensus 74 ~~~F~~~~f~v~~~vlIPRpeTE~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~--~~~~v~a~Dis~~Al~~A~~ 151 (271)
T d1nv8a_ 74 EKEFMGLSFLVEEGVFVPRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKF--SDAIVFATDVSSKAVEIARK 151 (271)
T ss_dssp EEEETTEEEECCTTSCCCCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH--SSCEEEEEESCHHHHHHHHH
T ss_pred cEEEeeeEEEEecCccCchhhhhhhhhhhhhhhccccccEEEEeeeeeehhhhhhhhc--ccceeeechhhhhHHHHHHH
Confidence 456778888888899998888754333222211 134568999999999999988764 67899999999999999999
Q ss_pred HhhhcCccccCccceEEEEecCCCCCCC-CCCeeEEEECCCccc-------------------------hh-HHHHHhcC
Q psy10572 94 NIDKGNSELLDQGRVQFVVWNGKHGYER-EAPYDIIHVSPSYFT-------------------------IP-QKLLDQLV 146 (204)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~v~~~~~~~~-------------------------~~-~~~~~~Lk 146 (204)
|++.++ ...++.+..+++...... .++||+|++|+++-. +. +-+.++|+
T Consensus 152 Na~~~~----~~~~~~i~~~~~~~~~~~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~ 227 (271)
T d1nv8a_ 152 NAERHG----VSDRFFVRKGEFLEPFKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDT 227 (271)
T ss_dssp HHHHTT----CTTSEEEEESSTTGGGGGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCC
T ss_pred HHHHcC----CCceeEEeecccccccccccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcC
Confidence 998865 234678888887765432 368999999998721 11 23457899
Q ss_pred CCcEEEEEecCCCCc
Q psy10572 147 PGGRMVMPVGEPFKG 161 (204)
Q Consensus 147 ~gG~l~~~~~~~~~~ 161 (204)
|||.+++.+...+..
T Consensus 228 ~~G~l~~Eig~~Q~~ 242 (271)
T d1nv8a_ 228 SGKIVLMEIGEDQVE 242 (271)
T ss_dssp TTCEEEEECCTTCHH
T ss_pred CCCEEEEEECHHHHH
Confidence 999999999877644
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.51 E-value=2.3e-14 Score=111.29 Aligned_cols=109 Identities=20% Similarity=0.337 Sum_probs=88.2
Q ss_pred hccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC----C
Q psy10572 45 KDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY----E 120 (204)
Q Consensus 45 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~ 120 (204)
...+.++.+|||+|||+|.+++.+++.. ..+|+++|+++.+++.+++|+..++. ..+++++++|+.+.. .
T Consensus 140 ~~~~~~g~~VLDl~~g~G~~si~~a~~g--a~~V~~vD~s~~al~~a~~N~~~ngl----~~~~~~~~~d~~~~~~~~~~ 213 (324)
T d2as0a2 140 EKWVQPGDRVLDVFTYTGGFAIHAAIAG--ADEVIGIDKSPRAIETAKENAKLNGV----EDRMKFIVGSAFEEMEKLQK 213 (324)
T ss_dssp GGGCCTTCEEEETTCTTTHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHTTC----GGGEEEEESCHHHHHHHHHH
T ss_pred HhhcCCCCeeecccCcccchhhhhhhcC--CcEEEeecCCHHHHHHHHHHHHHcCC----CccceeeechhhhhhHHHHh
Confidence 3446789999999999999999998764 24899999999999999999998762 357899999976421 2
Q ss_pred CCCCeeEEEECCCcc---------------chhHHHHHhcCCCcEEEEEecCCC
Q psy10572 121 REAPYDIIHVSPSYF---------------TIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 121 ~~~~~D~v~~~~~~~---------------~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
...+||+|+++++.. .++..+.++|+|||+|++++++..
T Consensus 214 ~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~ 267 (324)
T d2as0a2 214 KGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQH 267 (324)
T ss_dssp TTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTT
T ss_pred ccCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence 346899999998863 255777899999999999887764
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.50 E-value=6.7e-14 Score=97.15 Aligned_cols=131 Identities=17% Similarity=0.169 Sum_probs=92.9
Q ss_pred HHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC
Q psy10572 39 QMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG 118 (204)
Q Consensus 39 ~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~ 118 (204)
.+...+... -.+.+|||+|||+|.+++.++.+. . .+|+++|.++.+++.+++++...+ ...+++++++|+...
T Consensus 4 ~~fn~l~~~-~~g~~vlDl~~GtG~~~iea~~rg-a-~~v~~ve~~~~a~~~~~~n~~~~~----~~~~~~ii~~D~~~~ 76 (152)
T d2esra1 4 AIFNMIGPY-FNGGRVLDLFAGSGGLAIEAVSRG-M-SAAVLVEKNRKAQAIIQDNIIMTK----AENRFTLLKMEAERA 76 (152)
T ss_dssp HHHHHHCSC-CCSCEEEEETCTTCHHHHHHHHTT-C-CEEEEECCCHHHHHHHHHHHHTTT----CGGGEEEECSCHHHH
T ss_pred HHHHHHHhh-CCCCeEEEcCCccCHHHHHHHHhC-c-ceeeeehhchhhhhhhhhhhhhcc----cccchhhhccccccc
Confidence 344445432 357899999999999999888765 2 499999999999999999998754 235799999997642
Q ss_pred C-CCCCCeeEEEECCCccc-----hhHHHH--HhcCCCcEEEEEecCCCCc----ceEEEEeecCCceEE
Q psy10572 119 Y-EREAPYDIIHVSPSYFT-----IPQKLL--DQLVPGGRMVMPVGEPFKG----QNLTIIDKLADGYTI 176 (204)
Q Consensus 119 ~-~~~~~~D~v~~~~~~~~-----~~~~~~--~~Lk~gG~l~~~~~~~~~~----~~~~~~~~~~~~~~~ 176 (204)
. ....+||+|++++|+.. .++.+. ++|+|+|.+++........ ..+..+....+|...
T Consensus 77 l~~~~~~fDiIf~DPPy~~~~~~~~l~~i~~~~~L~~~g~iiiE~~~~~~~~~~~~~~~i~~~k~yG~t~ 146 (152)
T d2esra1 77 IDCLTGRFDLVFLDPPYAKETIVATIEALAAKNLLSEQVMVVCETDKTVLLPKEIATLGIWKEKIYGISK 146 (152)
T ss_dssp HHHBCSCEEEEEECCSSHHHHHHHHHHHHHHTTCEEEEEEEEEEEETTCCCCSEETTEEEEEEEEETTEE
T ss_pred ccccccccceeEechhhccchHHHHHHHHHHCCCcCCCeEEEEEeCCCCCCcccCCcceEEEEEecCCEE
Confidence 1 23468999999998753 234333 5699999999987654422 124444444455443
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.50 E-value=8.4e-14 Score=104.73 Aligned_cols=101 Identities=18% Similarity=0.134 Sum_probs=84.9
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCee
Q psy10572 47 KIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYD 126 (204)
Q Consensus 47 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D 126 (204)
.+.++.+|||+|||+|.+++.+++.. .++|+++|+++.+++.++++++.++. .++++++++|+.... ..+.||
T Consensus 104 ~~~~g~~VlD~~aG~G~~~l~~a~~~--~~~V~avd~n~~a~~~~~~N~~~n~l----~~~v~~~~~D~~~~~-~~~~~D 176 (260)
T d2frna1 104 VAKPDELVVDMFAGIGHLSLPIAVYG--KAKVIAIEKDPYTFKFLVENIHLNKV----EDRMSAYNMDNRDFP-GENIAD 176 (260)
T ss_dssp HCCTTCEEEETTCTTTTTHHHHHHHT--CCEEEEECCCHHHHHHHHHHHHHTTC----TTTEEEECSCTTTCC-CCSCEE
T ss_pred hcCCccEEEECcceEcHHHHHHHHhC--CcEEEEecCCHHHHHHHHHHHHHhCC----CceEEEEEcchHHhc-cCCCCC
Confidence 36889999999999999999999874 35999999999999999999998662 356999999987654 457899
Q ss_pred EEEECCCc--cchhHHHHHhcCCCcEEEEE
Q psy10572 127 IIHVSPSY--FTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 127 ~v~~~~~~--~~~~~~~~~~Lk~gG~l~~~ 154 (204)
.|+++.+. ..++..+.+.|++||++.+.
T Consensus 177 ~Ii~~~p~~~~~~l~~a~~~l~~gG~lh~~ 206 (260)
T d2frna1 177 RILMGYVVRTHEFIPKALSIAKDGAIIHYH 206 (260)
T ss_dssp EEEECCCSSGGGGHHHHHHHEEEEEEEEEE
T ss_pred EEEECCCCchHHHHHHHHhhcCCCCEEEEE
Confidence 99998654 34678899999999998653
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.49 E-value=1.5e-13 Score=103.36 Aligned_cols=101 Identities=24% Similarity=0.251 Sum_probs=83.0
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
..+..+|||||||+|.++..+++.. |+.+++++|+ +.+++.+++++...+ ..+++.++.+|..... + ..+|+
T Consensus 79 ~~~~~~vlDvG~G~G~~~~~l~~~~-P~~~~~~~Dl-p~~~~~a~~~~~~~~----~~~ri~~~~~d~~~~~-p-~~~D~ 150 (256)
T d1qzza2 79 WSAVRHVLDVGGGNGGMLAAIALRA-PHLRGTLVEL-AGPAERARRRFADAG----LADRVTVAEGDFFKPL-P-VTADV 150 (256)
T ss_dssp CTTCCEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTT----CTTTEEEEECCTTSCC-S-CCEEE
T ss_pred CccCCEEEEECCCCCHHHHHHHHhh-cCcEEEEecC-hHHHHHHHHHHhhcC----Ccceeeeeeeeccccc-c-ccchh
Confidence 3566799999999999999999998 7889999997 788999998887643 2467999999977643 3 45999
Q ss_pred EEECCCccc--------hhHHHHHhcCCCcEEEEEec
Q psy10572 128 IHVSPSYFT--------IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 128 v~~~~~~~~--------~~~~~~~~Lk~gG~l~~~~~ 156 (204)
|++...+++ +++++.+.|||||++++...
T Consensus 151 v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~ 187 (256)
T d1qzza2 151 VLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR 187 (256)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred hhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEe
Confidence 999988875 35788899999999988653
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.49 E-value=5.7e-14 Score=108.53 Aligned_cols=107 Identities=19% Similarity=0.245 Sum_probs=87.0
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC----CCCC
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY----EREA 123 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~ 123 (204)
+.++.+|||++||+|.+++.++... ..+|+++|.++.+++.++++++.++ +...+++++.+|+.+.. ....
T Consensus 142 ~~~g~~VLdlf~~~G~~sl~aa~~g--a~~V~~vD~s~~a~~~a~~N~~~n~---l~~~~~~~i~~d~~~~l~~~~~~~~ 216 (317)
T d2b78a2 142 SAAGKTVLNLFSYTAAFSVAAAMGG--AMATTSVDLAKRSRALSLAHFEANH---LDMANHQLVVMDVFDYFKYARRHHL 216 (317)
T ss_dssp TTBTCEEEEETCTTTHHHHHHHHTT--BSEEEEEESCTTHHHHHHHHHHHTT---CCCTTEEEEESCHHHHHHHHHHTTC
T ss_pred hhCCCceeecCCCCcHHHHHHHhCC--CceEEEecCCHHHHHHHHHHHHHhc---ccCcceEEEEccHHHHHHHHHhhcC
Confidence 5678999999999999999877743 3489999999999999999998876 33468999999976422 2346
Q ss_pred CeeEEEECCCcc---------------chhHHHHHhcCCCcEEEEEecCCC
Q psy10572 124 PYDIIHVSPSYF---------------TIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 124 ~~D~v~~~~~~~---------------~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
+||+|+++++.. .++..+.++|+|||+|++++++..
T Consensus 217 ~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~~ 267 (317)
T d2b78a2 217 TYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAAN 267 (317)
T ss_dssp CEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred CCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc
Confidence 899999998852 255778899999999999888754
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.49 E-value=3.3e-14 Score=110.11 Aligned_cols=103 Identities=20% Similarity=0.224 Sum_probs=84.5
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC----CCCCCC
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG----YEREAP 124 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~ 124 (204)
.++.+|||++||+|.++..++... .+|+++|.|+.+++.++++++.++ ..+++++++|..+. ....++
T Consensus 144 ~~g~rVLDl~~gtG~~s~~~a~g~---~~V~~vD~s~~al~~a~~n~~~ng-----l~~~~~i~~d~~~~~~~~~~~~~~ 215 (318)
T d1wxxa2 144 FRGERALDVFSYAGGFALHLALGF---REVVAVDSSAEALRRAEENARLNG-----LGNVRVLEANAFDLLRRLEKEGER 215 (318)
T ss_dssp CCEEEEEEETCTTTHHHHHHHHHE---EEEEEEESCHHHHHHHHHHHHHTT-----CTTEEEEESCHHHHHHHHHHTTCC
T ss_pred hCCCeeeccCCCCcHHHHHHHhcC---CcEEeecchHHHHHHHHHHHHHcC-----CCCcceeeccHHHHhhhhHhhhcC
Confidence 468899999999999999887643 499999999999999999998865 46799999986542 123468
Q ss_pred eeEEEECCCcc---------------chhHHHHHhcCCCcEEEEEecCCC
Q psy10572 125 YDIIHVSPSYF---------------TIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 125 ~D~v~~~~~~~---------------~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
||+|+++++.. .++..+.++|+|||+|++++++..
T Consensus 216 fD~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~ 265 (318)
T d1wxxa2 216 FDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHH 265 (318)
T ss_dssp EEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred CCEEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc
Confidence 99999998763 245678899999999999887754
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=1.9e-13 Score=103.99 Aligned_cols=107 Identities=18% Similarity=0.132 Sum_probs=78.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHh-----CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEE--EEecCC------
Q psy10572 50 PGARILDIGSGSGYLTACLAYMA-----GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQF--VVWNGK------ 116 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~-----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~d~~------ 116 (204)
+..+|||||||+|.++..+++.+ +....++|+|+|+.+++.+++++.... ...++.+ ...++.
T Consensus 40 ~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 115 (280)
T d1jqea_ 40 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKIS----NLENVKFAWHKETSSEYQSRM 115 (280)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCC----SCTTEEEEEECSCHHHHHHHH
T ss_pred CCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhcc----ccccccccchhhhhhhhcchh
Confidence 34489999999999988887653 123478999999999999999876532 1234443 333321
Q ss_pred CCCCCCCCeeEEEECCCccc------hhHHHHHhcCCCcEEEEEecCCCC
Q psy10572 117 HGYEREAPYDIIHVSPSYFT------IPQKLLDQLVPGGRMVMPVGEPFK 160 (204)
Q Consensus 117 ~~~~~~~~~D~v~~~~~~~~------~~~~~~~~Lk~gG~l~~~~~~~~~ 160 (204)
....+.++||+|++...+++ .++.+.++|+|||.+++.+++...
T Consensus 116 ~~~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~~~~~~ 165 (280)
T d1jqea_ 116 LEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSS 165 (280)
T ss_dssp TTSSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECTTS
T ss_pred cccCCCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEEecCcc
Confidence 12344578999999988876 458899999999999998876653
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=1.1e-13 Score=107.67 Aligned_cols=119 Identities=21% Similarity=0.157 Sum_probs=88.7
Q ss_pred ChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCcc----ccCccce
Q psy10572 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSE----LLDQGRV 108 (204)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~----~~~~~~~ 108 (204)
.......+++.+. ++++.+|||+|||+|.++..+++.. +..+++|+|+++.+++.|+.+.+..... .....++
T Consensus 136 ~~~~~~~~~~~~~--l~~~~~vlD~GcG~G~~~~~~a~~~-~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i 212 (328)
T d1nw3a_ 136 SFDLVAQMIDEIK--MTDDDLFVDLGSGVGQVVLQVAAAT-NCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEY 212 (328)
T ss_dssp CHHHHHHHHHHSC--CCTTCEEEEETCTTSHHHHHHHHHC-CCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCE
T ss_pred HHHHHHHHHHHcC--CCCCCEEEEcCCCCCHHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCce
Confidence 4456667777776 7899999999999999999999886 4558999999999999998876431100 0124589
Q ss_pred EEEEecCCCCCCCCC--CeeEEEECCCccc-----hhHHHHHhcCCCcEEEEE
Q psy10572 109 QFVVWNGKHGYEREA--PYDIIHVSPSYFT-----IPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 109 ~~~~~d~~~~~~~~~--~~D~v~~~~~~~~-----~~~~~~~~Lk~gG~l~~~ 154 (204)
+++++|+......+. ..|+|+++...+. .+.++.+.|||||++++.
T Consensus 213 ~~~~gd~~~~~~~~~~~~advi~~~~~~f~~~~~~~l~e~~r~LKpGg~iv~~ 265 (328)
T d1nw3a_ 213 TLERGDFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSS 265 (328)
T ss_dssp EEEECCTTSHHHHHHHHHCSEEEECCTTTCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred EEEECcccccccccccCcceEEEEcceecchHHHHHHHHHHHhCCCCcEEEEe
Confidence 999999776543322 3578888755432 457888999999999874
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.48 E-value=2.4e-13 Score=105.80 Aligned_cols=98 Identities=18% Similarity=0.167 Sum_probs=77.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
..++.+|||+|||+|.++..+++... .+|+++|.++ +++.|++....++ ...++.+++++..+...+.++||+
T Consensus 36 ~~~~~~VLDlGcGtG~ls~~aa~~Ga--~~V~avd~s~-~~~~a~~~~~~~~----~~~~i~~i~~~~~~l~~~~~~~D~ 108 (328)
T d1g6q1_ 36 LFKDKIVLDVGCGTGILSMFAAKHGA--KHVIGVDMSS-IIEMAKELVELNG----FSDKITLLRGKLEDVHLPFPKVDI 108 (328)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHTCC--SEEEEEESST-HHHHHHHHHHHTT----CTTTEEEEESCTTTSCCSSSCEEE
T ss_pred cCCcCEEEEeCCCCCHHHHHHHHhCC--CEEEEEeCCH-HHHHHHHHHHHhC----ccccceEEEeehhhccCcccceeE
Confidence 35788999999999999998888642 3899999886 6678888777654 246899999998887777789999
Q ss_pred EEECCCccc---------hhHHHHHhcCCCcEEE
Q psy10572 128 IHVSPSYFT---------IPQKLLDQLVPGGRMV 152 (204)
Q Consensus 128 v~~~~~~~~---------~~~~~~~~Lk~gG~l~ 152 (204)
|++...... ++....++|||||+++
T Consensus 109 i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 109 IISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp EEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred EEEEecceeeccchhHHHHHHHHHhccCCCeEEE
Confidence 998654422 3456668999999984
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=4.1e-13 Score=103.69 Aligned_cols=99 Identities=18% Similarity=0.174 Sum_probs=75.7
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
..++++|||||||+|.+++.+++... .+|+++|.++.+.. +++....++ ...++.+++++..+...+..+||+
T Consensus 33 ~~~~~~VLDiGcG~G~lsl~aa~~Ga--~~V~aid~s~~~~~-a~~~~~~~~----~~~~i~~~~~~~~~l~~~~~~~D~ 105 (311)
T d2fyta1 33 IFKDKVVLDVGCGTGILSMFAAKAGA--KKVLGVDQSEILYQ-AMDIIRLNK----LEDTITLIKGKIEEVHLPVEKVDV 105 (311)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHTTC--SEEEEEESSTHHHH-HHHHHHHTT----CTTTEEEEESCTTTSCCSCSCEEE
T ss_pred cCCcCEEEEECCCCCHHHHHHHHcCC--CEEEEEeCHHHHHH-HHHHHHHhC----CCccceEEEeeHHHhcCccccceE
Confidence 45788999999999999999998752 48999999998765 444444432 246899999998887666789999
Q ss_pred EEECCCccc---------hhHHHHHhcCCCcEEEE
Q psy10572 128 IHVSPSYFT---------IPQKLLDQLVPGGRMVM 153 (204)
Q Consensus 128 v~~~~~~~~---------~~~~~~~~Lk~gG~l~~ 153 (204)
|++....+. +.....++|+|||+++-
T Consensus 106 Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 106 IISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp EEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred EEEeeeeeecccccccHHHHHHHHhcCCCCcEEec
Confidence 998654432 23445678999999863
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=99.44 E-value=2.2e-12 Score=91.87 Aligned_cols=136 Identities=15% Similarity=0.232 Sum_probs=99.2
Q ss_pred ccccccccc--cCCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHH
Q psy10572 17 PYRIKSRQI--GYGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKN 94 (204)
Q Consensus 17 ~y~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~ 94 (204)
.|....+.. +.+...+...+.+.+...+.. ...+.+|||++||+|.++..++.+.. .+|+.+|.++.+++.++++
T Consensus 7 ~~kg~~l~~~~~~~~RPt~~~vrealFn~l~~-~~~~~~vLDlfaGsG~~g~ea~srGa--~~v~~ve~~~~a~~~~~~N 83 (182)
T d2fhpa1 7 EYGGRRLKALDGDNTRPTTDKVKESIFNMIGP-YFDGGMALDLYSGSGGLAIEAVSRGM--DKSICIEKNFAALKVIKEN 83 (182)
T ss_dssp TTTTCBCCCCCCCSSCCCCHHHHHHHHHHHCS-CCSSCEEEETTCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHH
T ss_pred ccCCCEecCCCCCCcCcCcHHHHHHHHHHHHH-hcCCCEEEEcccccccccceeeecch--hHHHHHHHHHHHHHHHHHH
Confidence 344444432 334455666677777776653 35688999999999999999998753 3899999999999999999
Q ss_pred hhhcCccccCccceEEEEecCCCCC----CCCCCeeEEEECCCccc-----hhHHHH--HhcCCCcEEEEEecCCC
Q psy10572 95 IDKGNSELLDQGRVQFVVWNGKHGY----EREAPYDIIHVSPSYFT-----IPQKLL--DQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~v~~~~~~~~-----~~~~~~--~~Lk~gG~l~~~~~~~~ 159 (204)
+.... ...++++++.|+.... ....+||+|++++|+.. .++.+. .+|+++|++++.+....
T Consensus 84 ~~~~~----~~~~~~i~~~D~~~~l~~~~~~~~~fDlIflDPPY~~~~~~~~l~~i~~~~~L~~~giIi~E~~~~~ 155 (182)
T d2fhpa1 84 IAITK----EPEKFEVRKMDANRALEQFYEEKLQFDLVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIVCETDKTV 155 (182)
T ss_dssp HHHHT----CGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCGGGCCHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred hhhhh----cccccccccccchhhhhhhcccCCCcceEEechhhhhhHHHHHHHHHHHCCCCCCCEEEEEEcCCCC
Confidence 97643 2357999999975321 23457999999999853 345554 36999999999876543
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=4.6e-13 Score=98.07 Aligned_cols=120 Identities=19% Similarity=0.252 Sum_probs=93.4
Q ss_pred cccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccce
Q psy10572 29 ADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRV 108 (204)
Q Consensus 29 ~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~ 108 (204)
.....+.. ..++..+.. ....++|||+|||+|+.+.+++..++.+++++++|.++...+.|++++...+ ...++
T Consensus 40 ~~~i~~~~-g~lL~~L~~-~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag----~~~~i 113 (219)
T d2avda1 40 DSMMTCEQ-AQLLANLAR-LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAE----AEHKI 113 (219)
T ss_dssp GGSCCHHH-HHHHHHHHH-HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTT----CTTTE
T ss_pred CcccCHHH-HHHHHHHHH-ccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcC----ccceE
Confidence 34445554 444444443 4567799999999999999999988667899999999999999999998754 24579
Q ss_pred EEEEecCCCCC------CCCCCeeEEEECCCccc---hhHHHHHhcCCCcEEEEE
Q psy10572 109 QFVVWNGKHGY------EREAPYDIIHVSPSYFT---IPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 109 ~~~~~d~~~~~------~~~~~~D~v~~~~~~~~---~~~~~~~~Lk~gG~l~~~ 154 (204)
+++.+|+.+.. ...++||+|+.+..-.. ..+.+.+.|+|||.+++.
T Consensus 114 ~~~~Gda~e~l~~~~~~~~~~~fD~ifiD~dk~~y~~~~~~~~~lL~~GGvii~D 168 (219)
T d2avda1 114 DLRLKPALETLDELLAAGEAGTFDVAVVDADKENCSAYYERCLQLLRPGGILAVL 168 (219)
T ss_dssp EEEESCHHHHHHHHHHTTCTTCEEEEEECSCSTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEeehhhcchhhhhhcccCCccEEEEeCCHHHHHHHHHHHHHHhcCCcEEEEe
Confidence 99999865321 22468999999987665 457888999999999984
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.44 E-value=4.3e-13 Score=96.23 Aligned_cols=116 Identities=22% Similarity=0.242 Sum_probs=94.7
Q ss_pred hHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe
Q psy10572 34 PHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW 113 (204)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 113 (204)
|-+...+++.+. +.++..+||++||+|..+..+++.. +.++++|+|.++.+++.|++++.... .++.++++
T Consensus 9 pVll~evi~~l~--~~~~~~~lD~t~G~Gghs~~il~~~-~~~~vi~~D~d~~~l~~a~~~l~~~~------~r~~~~~~ 79 (192)
T d1m6ya2 9 PVMVREVIEFLK--PEDEKIILDCTVGEGGHSRAILEHC-PGCRIIGIDVDSEVLRIAEEKLKEFS------DRVSLFKV 79 (192)
T ss_dssp CTTHHHHHHHHC--CCTTCEEEETTCTTSHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHTGGGT------TTEEEEEC
T ss_pred chHHHHHHHhhC--CCCCCEEEEecCCCcHHHHHHHhcC-CCCeEEEeechHHHHHHHHHhhcccc------ccccchhH
Confidence 446677888887 7899999999999999999999998 67899999999999999999987632 57999999
Q ss_pred cCCCC-----CCCCCCeeEEEECCCccc---------------hhHHHHHhcCCCcEEEEEecCC
Q psy10572 114 NGKHG-----YEREAPYDIIHVSPSYFT---------------IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 114 d~~~~-----~~~~~~~D~v~~~~~~~~---------------~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
++... ....+++|.|+.+.++.. .+..+.++|+|||.+++..+..
T Consensus 80 ~f~~~~~~~~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s 144 (192)
T d1m6ya2 80 SYREADFLLKTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHS 144 (192)
T ss_dssp CGGGHHHHHHHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSH
T ss_pred HHhhHHHHHHHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeecccc
Confidence 86532 133478999999877632 3467779999999999877654
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.43 E-value=5.5e-13 Score=103.21 Aligned_cols=98 Identities=19% Similarity=0.178 Sum_probs=76.6
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
+.++++|||+|||+|.++..+++..+ .+|+++|.++.+ ..++++...++ ...++.+++++..+...+.+++|+
T Consensus 31 ~~~~~~VLDiGcG~G~ls~~aa~~Ga--~~V~avd~s~~~-~~a~~~~~~n~----~~~~v~~~~~~~~~~~~~~~~~D~ 103 (316)
T d1oria_ 31 LFKDKVVLDVGSGTGILCMFAAKAGA--RKVIGIECSSIS-DYAVKIVKANK----LDHVVTIIKGKVEEVELPVEKVDI 103 (316)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHTTC--SEEEEEECSTTH-HHHHHHHHHTT----CTTTEEEEESCTTTCCCSSSCEEE
T ss_pred cCCcCEEEEEecCCcHHHHHHHHhCC--CEEEEEcCcHHH-hhhhhHHHHhC----CccccceEeccHHHcccccceeEE
Confidence 34788999999999999999998652 389999999764 66666665543 246799999998887777789999
Q ss_pred EEECCCccc---------hhHHHHHhcCCCcEEE
Q psy10572 128 IHVSPSYFT---------IPQKLLDQLVPGGRMV 152 (204)
Q Consensus 128 v~~~~~~~~---------~~~~~~~~Lk~gG~l~ 152 (204)
|++...... ++..+.++|+|||.++
T Consensus 104 ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~ii 137 (316)
T d1oria_ 104 IISEWMGYCLFYESMLNTVLHARDKWLAPDGLIF 137 (316)
T ss_dssp EEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred EeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEE
Confidence 988654432 4466779999999986
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.43 E-value=4.1e-13 Score=102.68 Aligned_cols=123 Identities=14% Similarity=0.107 Sum_probs=89.2
Q ss_pred cccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccce
Q psy10572 29 ADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRV 108 (204)
Q Consensus 29 ~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~ 108 (204)
.+.........+.+.+.. ..++.+|||++||+|.++..++... ++|++||.|+.+++.|++|+..++ +...++
T Consensus 112 ~f~dqr~nr~~~~~~~~~-~~~~~rVLdlf~~tG~~sl~aa~~G---A~V~~VD~s~~al~~a~~N~~ln~---~~~~~~ 184 (309)
T d2igta1 112 VFPEQIVHWEWLKNAVET-ADRPLKVLNLFGYTGVASLVAAAAG---AEVTHVDASKKAIGWAKENQVLAG---LEQAPI 184 (309)
T ss_dssp CCGGGHHHHHHHHHHHHH-SSSCCEEEEETCTTCHHHHHHHHTT---CEEEEECSCHHHHHHHHHHHHHHT---CTTSCE
T ss_pred cccchhHHHHHHHHHHhh-ccCCCeEEEecCCCcHHHHHHHhCC---CeEEEEeChHHHHHHHHHhhhhhc---ccCCcE
Confidence 344444444444444442 4567899999999999999988753 489999999999999999998865 233479
Q ss_pred EEEEecCCCCC----CCCCCeeEEEECCCccc----------------hhHHHHHhcCCCcEEEEEecCC
Q psy10572 109 QFVVWNGKHGY----EREAPYDIIHVSPSYFT----------------IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 109 ~~~~~d~~~~~----~~~~~~D~v~~~~~~~~----------------~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
+++++|+.... ....+||+|+++++... +.+.+..+|+|||.+++.+.+.
T Consensus 185 ~~i~~D~~~~l~~~~~~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~s 254 (309)
T d2igta1 185 RWICEDAMKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYS 254 (309)
T ss_dssp EEECSCHHHHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECC
T ss_pred EEEeCCHHHhHHHHhhcCCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecCC
Confidence 99999976432 22468999999988521 3356778899999765554433
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=99.42 E-value=1.4e-12 Score=93.12 Aligned_cols=142 Identities=17% Similarity=0.141 Sum_probs=97.8
Q ss_pred CcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccc
Q psy10572 28 GADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGR 107 (204)
Q Consensus 28 ~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~ 107 (204)
+.+.+...+.+.+...+... -.+.+|||++||+|.++..++.+.. .+|+.||.++.+++.+++++.... ..+
T Consensus 22 ~~RPt~~~vre~lfn~l~~~-~~~~~vLDlfaGsG~~giealsrGa--~~v~~VE~~~~a~~~~k~N~~~~~-----~~~ 93 (183)
T d2fpoa1 22 GLRPTTDRVRETLFNWLAPV-IVDAQCLDCFAGSGALGLEALSRYA--AGATLIEMDRAVSQQLIKNLATLK-----AGN 93 (183)
T ss_dssp -----CHHHHHHHHHHHHHH-HTTCEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTT-----CCS
T ss_pred CcCcCcHHHHHHHHhhhhcc-cchhhhhhhhccccceeeeEEecCc--ceeEEEEEeechhhHHHHHHhhcc-----ccc
Confidence 34556666667777666543 3567999999999999999888753 389999999999999999988633 467
Q ss_pred eEEEEecCCCCC-CCCCCeeEEEECCCccc-----hhHHHH--HhcCCCcEEEEEecCCCC----cceEEEEeecCCceE
Q psy10572 108 VQFVVWNGKHGY-EREAPYDIIHVSPSYFT-----IPQKLL--DQLVPGGRMVMPVGEPFK----GQNLTIIDKLADGYT 175 (204)
Q Consensus 108 ~~~~~~d~~~~~-~~~~~~D~v~~~~~~~~-----~~~~~~--~~Lk~gG~l~~~~~~~~~----~~~~~~~~~~~~~~~ 175 (204)
..++..|..... ....+||+|++++|+.. .+..+. ..|+++|.+++....... ...+..+....+|..
T Consensus 94 ~~ii~~d~~~~l~~~~~~fDlIf~DPPY~~~~~~~~l~~l~~~~~L~~~~iIiiE~~~~~~~~~~~~~~~i~k~k~yG~t 173 (183)
T d2fpoa1 94 ARVVNSNAMSFLAQKGTPHNIVFVDPPFRRGLLEETINLLEDNGWLADEALIYVESEVENGLPTVPANWSLHREKVAGQV 173 (183)
T ss_dssp EEEECSCHHHHHSSCCCCEEEEEECCSSSTTTHHHHHHHHHHTTCEEEEEEEEEEEEGGGCSCCCCTTEEEEEEEEETTE
T ss_pred eeeeeecccccccccccccCEEEEcCccccchHHHHHHHHHHCCCCCCCeEEEEEecCcCCcccCCCCcEEEEEEEeCcE
Confidence 889998866332 23467999999999865 223443 358999999997643221 133455554444544
Q ss_pred EE
Q psy10572 176 IV 177 (204)
Q Consensus 176 ~~ 177 (204)
.+
T Consensus 174 ~i 175 (183)
T d2fpoa1 174 AY 175 (183)
T ss_dssp EE
T ss_pred EE
Confidence 33
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=9.9e-14 Score=104.10 Aligned_cols=110 Identities=17% Similarity=0.065 Sum_probs=75.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccC-----------------------
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLD----------------------- 104 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~----------------------- 104 (204)
..++.+|||+|||+|..+..++... ..+|+|+|+|+.+++.|++++.........
T Consensus 49 ~~~g~~vLDlGcG~G~~~~~~~~~~--~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (257)
T d2a14a1 49 GLQGDTLIDIGSGPTIYQVLAACDS--FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEK 126 (257)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGGT--EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred CCCCCEEEEECCCCCHhHHHHhccc--cCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHH
Confidence 3567799999999999887666543 237999999999999999987653210000
Q ss_pred -ccce-EEEEecC----CCCCCCCCCeeEEEECCCccch----------hHHHHHhcCCCcEEEEEecCCC
Q psy10572 105 -QGRV-QFVVWNG----KHGYEREAPYDIIHVSPSYFTI----------PQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 105 -~~~~-~~~~~d~----~~~~~~~~~~D~v~~~~~~~~~----------~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
...+ .....+. .....+.++||+|++...++++ ++++.++|||||.+++..+...
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~ 197 (257)
T d2a14a1 127 LRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRL 197 (257)
T ss_dssp HHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSC
T ss_pred HhhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEeccc
Confidence 0001 1111111 1223456789999998877653 4788999999999999876553
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.39 E-value=1.1e-12 Score=96.53 Aligned_cols=112 Identities=20% Similarity=0.279 Sum_probs=89.3
Q ss_pred HHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCC
Q psy10572 38 AQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKH 117 (204)
Q Consensus 38 ~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 117 (204)
..++..+.. .....+|||+|++.|+.+.++++.++++++++.+|.++...+.|++++...+ ..++++++.+++.+
T Consensus 48 g~~L~~L~~-~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g----~~~~i~~~~g~a~~ 122 (227)
T d1susa1 48 GQFLSMLLK-LINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAG----VDHKIDFREGPALP 122 (227)
T ss_dssp HHHHHHHHH-HHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTT----CGGGEEEEESCHHH
T ss_pred HHHHHHHHH-hcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhc----cccceeeeehHHHH
Confidence 334444432 4567799999999999999999998667899999999999999999998754 24579999999763
Q ss_pred CCC-------CCCCeeEEEECCCccc---hhHHHHHhcCCCcEEEEE
Q psy10572 118 GYE-------REAPYDIIHVSPSYFT---IPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 118 ~~~-------~~~~~D~v~~~~~~~~---~~~~~~~~Lk~gG~l~~~ 154 (204)
... ..++||+|++++.-.. ..+.+.++|+|||.+++.
T Consensus 123 ~L~~l~~~~~~~~~fD~iFiDa~k~~y~~~~e~~~~ll~~gGiii~D 169 (227)
T d1susa1 123 VLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYD 169 (227)
T ss_dssp HHHHHHHCGGGTTCBSEEEECSCSTTHHHHHHHHHHHBCTTCCEEEE
T ss_pred HHHHHHhccccCCceeEEEeccchhhhHHHHHHHHhhcCCCcEEEEc
Confidence 321 2467999999987655 457888999999999994
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.38 E-value=3.9e-12 Score=92.01 Aligned_cols=98 Identities=18% Similarity=0.227 Sum_probs=74.4
Q ss_pred CcccCChHHHHHHHHHHhcc-CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCcc
Q psy10572 28 GADISSPHIHAQMLELLKDK-IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQG 106 (204)
Q Consensus 28 ~~~~~~~~~~~~~~~~l~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~ 106 (204)
+++.+++.+...++...... --.+.+|||+|||+|.+++.++... ..+|+|+|+++.+++.+++++.... .
T Consensus 23 ~qy~Tp~~~a~~~~~~~~~~~dl~g~~vLDlg~GtG~l~i~a~~~g--~~~v~~vdi~~~~~~~a~~N~~~~~------~ 94 (201)
T d1wy7a1 23 EQYRTPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLG--AKEVICVEVDKEAVDVLIENLGEFK------G 94 (201)
T ss_dssp TCCCCCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHTGGGT------T
T ss_pred ccCCCCHHHHHHHHHHHHhcCCCCCCEEEECcCcchHHHHHHHHcC--CCEEEEEcCcHHHHHHHHHHHHHcC------C
Confidence 45566777766666544421 1357899999999999999887653 3489999999999999999987643 4
Q ss_pred ceEEEEecCCCCCCCCCCeeEEEECCCccc
Q psy10572 107 RVQFVVWNGKHGYEREAPYDIIHVSPSYFT 136 (204)
Q Consensus 107 ~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~ 136 (204)
+..++..|.... ..+||+|++|+++..
T Consensus 95 ~~~~~~~d~~~~---~~~fD~Vi~nPP~~~ 121 (201)
T d1wy7a1 95 KFKVFIGDVSEF---NSRVDIVIMNPPFGS 121 (201)
T ss_dssp SEEEEESCGGGC---CCCCSEEEECCCCSS
T ss_pred CceEEECchhhh---CCcCcEEEEcCcccc
Confidence 678888886553 367999999999743
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=3.9e-12 Score=95.03 Aligned_cols=113 Identities=20% Similarity=0.134 Sum_probs=82.1
Q ss_pred cccccccccCCcccCChHHHHH---HHHHHhccC----CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHH
Q psy10572 18 YRIKSRQIGYGADISSPHIHAQ---MLELLKDKI----KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAES 90 (204)
Q Consensus 18 y~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~----~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~ 90 (204)
|+...+..+.+..++.+..... ++..+.... .+..++||+|||+|..+..+++.. +..+++|+|+++.+++.
T Consensus 22 f~gl~~~v~~~~LiPr~~~r~~~~~~i~~l~~~~~~~~~~~~~~LDiGtGsg~I~~~l~~~~-~~~~~~~~Di~~~al~~ 100 (250)
T d2h00a1 22 DFGLSIDIPLERLIPTVPLRLNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATL-NGWYFLATEVDDMCFNY 100 (250)
T ss_dssp HHCCCCCCCTTSCCCCHHHHHHHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHH-HCCEEEEEESCHHHHHH
T ss_pred HcCceEEeCCCeecCCCCCHHHHHHHHHHHhhhhccCccccceEEEeCCCchHHHHHHHHhC-CCccccceecCHHHHHH
Confidence 3444566677777776554333 333332211 234599999999999999999988 67899999999999999
Q ss_pred HHHHhhhcCccccCccceEEEEecCCCCC------CCCCCeeEEEECCCcc
Q psy10572 91 SIKNIDKGNSELLDQGRVQFVVWNGKHGY------EREAPYDIIHVSPSYF 135 (204)
Q Consensus 91 a~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~~~~~D~v~~~~~~~ 135 (204)
|+++++.+. ...++.+.+.+..... ...++||+|++|+++.
T Consensus 101 A~~N~~~n~----l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ivsNPPY~ 147 (250)
T d2h00a1 101 AKKNVEQNN----LSDLIKVVKVPQKTLLMDALKEESEIIYDFCMCNPPFF 147 (250)
T ss_dssp HHHHHHHTT----CTTTEEEEECCTTCSSTTTSTTCCSCCBSEEEECCCCC
T ss_pred HHHHHHHhC----CCcceeeeeeccHHhhhhhhhhcccCceeEEEecCccc
Confidence 999998865 2457888876644322 2246799999999985
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.37 E-value=3.6e-12 Score=91.52 Aligned_cols=95 Identities=19% Similarity=0.230 Sum_probs=71.4
Q ss_pred cCCcccCChHHHHHHHHHHhcc-CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccC
Q psy10572 26 GYGADISSPHIHAQMLELLKDK-IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLD 104 (204)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~l~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~ 104 (204)
...+..++..+.+.++..+... --.+++|||+|||+|.+++.++... ..+|+++|+++.+++.|++++
T Consensus 23 ~leQy~T~~~~a~~~~~~~~~~~dl~Gk~VLDlGcGtG~l~i~a~~~g--a~~V~~vDid~~a~~~ar~N~--------- 91 (197)
T d1ne2a_ 23 YLEQYPTDASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLLG--AESVTAFDIDPDAIETAKRNC--------- 91 (197)
T ss_dssp ----CCCCHHHHHHHHHHHHHHTSSBTSEEEEETCTTCHHHHHHHHTT--BSEEEEEESCHHHHHHHHHHC---------
T ss_pred ccccCCCCHHHHHHHHHHHHHcCCCCCCEEEEeCCCCcHHHHHHHHcC--CCcccccccCHHHHHHHHHcc---------
Confidence 3456677778877776555522 1357899999999999998877764 248999999999999999875
Q ss_pred ccceEEEEecCCCCCCCCCCeeEEEECCCcc
Q psy10572 105 QGRVQFVVWNGKHGYEREAPYDIIHVSPSYF 135 (204)
Q Consensus 105 ~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~ 135 (204)
.++.++.+|+... .++||+|++|+++.
T Consensus 92 -~~~~~~~~D~~~l---~~~fD~Vi~NPPfg 118 (197)
T d1ne2a_ 92 -GGVNFMVADVSEI---SGKYDTWIMNPPFG 118 (197)
T ss_dssp -TTSEEEECCGGGC---CCCEEEEEECCCC-
T ss_pred -ccccEEEEehhhc---CCcceEEEeCcccc
Confidence 3578899997653 26799999999974
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.36 E-value=1.7e-12 Score=102.79 Aligned_cols=119 Identities=18% Similarity=0.239 Sum_probs=82.7
Q ss_pred ChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCcc----ccCccce
Q psy10572 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSE----LLDQGRV 108 (204)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~----~~~~~~~ 108 (204)
.+.....+++.+. ++++.++||+|||+|..+..++... +..+++|+|+++.+++.|+.+....... ......+
T Consensus 201 ~~~~i~~Il~~l~--Lkpgd~fLDLGCG~G~~vl~aA~~~-g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~ 277 (406)
T d1u2za_ 201 LPNFLSDVYQQCQ--LKKGDTFMDLGSGVGNCVVQAALEC-GCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNV 277 (406)
T ss_dssp CHHHHHHHHHHTT--CCTTCEEEEESCTTSHHHHHHHHHH-CCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCE
T ss_pred CHHHHHHHHHHhC--CCCCCEEEeCCCCCcHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccc
Confidence 4456667777777 8999999999999999999999987 4458999999999999999987542100 0011223
Q ss_pred EE-EEecCCCCCC---CCCCeeEEEECCCcc-----chhHHHHHhcCCCcEEEEE
Q psy10572 109 QF-VVWNGKHGYE---REAPYDIIHVSPSYF-----TIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 109 ~~-~~~d~~~~~~---~~~~~D~v~~~~~~~-----~~~~~~~~~Lk~gG~l~~~ 154 (204)
.+ ..++...... .-..+|+|+++...+ ..+.++.+.|||||++++.
T Consensus 278 ~~~~~~~f~~~~~~d~~~~~adVV~inn~~f~~~l~~~L~ei~r~LKPGGrIVs~ 332 (406)
T d1u2za_ 278 EFSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISL 332 (406)
T ss_dssp EEEESSCSTTCHHHHHHGGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred eeeeeechhhccccccccccceEEEEecccCchHHHHHHHHHHHhcCCCcEEEEe
Confidence 33 2333322110 113578888875432 2457888999999999874
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.35 E-value=2e-12 Score=94.42 Aligned_cols=101 Identities=14% Similarity=0.129 Sum_probs=80.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC------CCC
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY------ERE 122 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~~ 122 (204)
.+..+|||+|||+|+.+.++++.++++++++++|.++...+.|+.++...+ ...+++++.+|..+.. ...
T Consensus 55 ~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~g----l~~~i~l~~Gd~~e~l~~l~~~~~~ 130 (214)
T d2cl5a1 55 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAG----LQDKVTILNGASQDLIPQLKKKYDV 130 (214)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHT----CGGGEEEEESCHHHHGGGHHHHSCC
T ss_pred hCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcC----CCccceeeeccccccccchhhcccc
Confidence 455699999999999999999987667899999999999999999988754 2357999999976432 233
Q ss_pred CCeeEEEECCCccch-----hHHHHHhcCCCcEEEE
Q psy10572 123 APYDIIHVSPSYFTI-----PQKLLDQLVPGGRMVM 153 (204)
Q Consensus 123 ~~~D~v~~~~~~~~~-----~~~~~~~Lk~gG~l~~ 153 (204)
++||+|+++...... +....++|+|||++++
T Consensus 131 ~~~D~ifiD~~~~~~~~~~~l~~~~~lLkpGGvIv~ 166 (214)
T d2cl5a1 131 DTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLA 166 (214)
T ss_dssp CCEEEEEECSCGGGHHHHHHHHHHTTCEEEEEEEEE
T ss_pred cccceeeecccccccccHHHHHHHhCccCCCcEEEE
Confidence 679999998765442 2455678999999887
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=1.4e-12 Score=98.35 Aligned_cols=139 Identities=12% Similarity=0.050 Sum_probs=84.7
Q ss_pred cccccccccCCcccCCh----HHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHH
Q psy10572 18 YRIKSRQIGYGADISSP----HIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIK 93 (204)
Q Consensus 18 y~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~ 93 (204)
|++..+..+.+...... .....+.+.+......+.+|||+|||+|.++...+.... .+|+++|+|+.+++.+++
T Consensus 18 Y~~~~y~~~~~~~~~~~~~~~~~~~~~~~~f~~g~~~g~~vLDiGcG~g~~~~~~~~~~~--~~v~~~D~S~~~i~~~~~ 95 (263)
T d2g72a1 18 YLRNNYAPPRGDLCNPNGVGPWKLRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHF--EDITMTDFLEVNRQELGR 95 (263)
T ss_dssp HHHHHHSTTTTCCSSTTSHHHHHHHHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGGC--SEEEEECSCHHHHHHHHH
T ss_pred HHHHHhCcCcccchhhhhhhhhHHHHHHHHcCCCCCCCcEEEEeccCCCHHHHHHhcccC--CeEEEEeCCHHHHHHHHH
Confidence 44444443334333332 233344444443345678999999999988754444331 289999999999999998
Q ss_pred HhhhcCcc--c-----------------------cCccceEEEEecCCCC------CCCCCCeeEEEECCCccc------
Q psy10572 94 NIDKGNSE--L-----------------------LDQGRVQFVVWNGKHG------YEREAPYDIIHVSPSYFT------ 136 (204)
Q Consensus 94 ~~~~~~~~--~-----------------------~~~~~~~~~~~d~~~~------~~~~~~~D~v~~~~~~~~------ 136 (204)
++...... + .......+...|.... ....++||+|++...+++
T Consensus 96 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~ 175 (263)
T d2g72a1 96 WLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLA 175 (263)
T ss_dssp HHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHH
T ss_pred HHhcCcccccchhhhhhhhhhccccchhhhhHHHhhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHH
Confidence 77542100 0 0001123344454321 123467999999887755
Q ss_pred ----hhHHHHHhcCCCcEEEEEecCC
Q psy10572 137 ----IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 137 ----~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
.++++.++|||||.|++.....
T Consensus 176 ~~~~~l~~~~~~LkPGG~li~~~~~~ 201 (263)
T d2g72a1 176 SFQRALDHITTLLRPGGHLLLIGALE 201 (263)
T ss_dssp HHHHHHHHHHTTEEEEEEEEEEEEES
T ss_pred HHHHHHHHHHHHcCCCCEEEEecccC
Confidence 3467889999999999866533
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=99.29 E-value=6e-11 Score=84.42 Aligned_cols=155 Identities=14% Similarity=0.133 Sum_probs=100.6
Q ss_pred cccccccccc--CCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHH
Q psy10572 17 PYRIKSRQIG--YGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKN 94 (204)
Q Consensus 17 ~y~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~ 94 (204)
.|....+..+ .....+...+.+.+...+... -.+.+|||+.||+|.++.+++.+.. ..++.||.+..+++..+++
T Consensus 9 ~~kg~~l~~~~~~~~RPt~~~vrealFn~l~~~-~~~~~vLDlFaGsG~~glEalSRGA--~~v~fVE~~~~a~~~ik~N 85 (183)
T d2ifta1 9 LWRGRKLPVLNSEGLRPTGDRVKETLFNWLMPY-IHQSECLDGFAGSGSLGFEALSRQA--KKVTFLELDKTVANQLKKN 85 (183)
T ss_dssp TTTTCEEECC---------CHHHHHHHHHHHHH-HTTCEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHH
T ss_pred ccCCCEecCCCCCCcCcCcHHHHHHHHHHhhhh-cccceEeecccCccceeeeeeeecc--eeeEEeecccchhhhHhhH
Confidence 3444444333 334556666777777777643 3567999999999999999998863 4999999999999999999
Q ss_pred hhhcCccccCccceEEEEecCCC---CCCCCCCeeEEEECCCccc-----hhHHHH--HhcCCCcEEEEEecCCCCc---
Q psy10572 95 IDKGNSELLDQGRVQFVVWNGKH---GYEREAPYDIIHVSPSYFT-----IPQKLL--DQLVPGGRMVMPVGEPFKG--- 161 (204)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~~D~v~~~~~~~~-----~~~~~~--~~Lk~gG~l~~~~~~~~~~--- 161 (204)
++..+ .......+...|... ......+||+|++++|+.. +++.+. .+|+++|.+++........
T Consensus 86 i~~l~---~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFlDPPY~~~~~~~~l~~l~~~~~L~~~~liiiE~~~~~~~~~~ 162 (183)
T d2ifta1 86 LQTLK---CSSEQAEVINQSSLDFLKQPQNQPHFDVVFLDPPFHFNLAEQAISLLCENNWLKPNALIYVETEKDKPLITP 162 (183)
T ss_dssp HHHTT---CCTTTEEEECSCHHHHTTSCCSSCCEEEEEECCCSSSCHHHHHHHHHHHTTCEEEEEEEEEEEESSSCCCCC
T ss_pred Hhhhc---ccccccccccccccccccccccCCcccEEEechhHhhhhHHHHHHHHHHhCCcCCCcEEEEEecCCCCCCCC
Confidence 87633 112346666666432 2233457999999999865 334443 4689999999987654322
Q ss_pred ceEEEEeecCCceEEE
Q psy10572 162 QNLTIIDKLADGYTIV 177 (204)
Q Consensus 162 ~~~~~~~~~~~~~~~~ 177 (204)
..+..+....+|...+
T Consensus 163 ~~~~~~k~kkyG~t~i 178 (183)
T d2ifta1 163 ENWTLLKEKTTGIVSY 178 (183)
T ss_dssp TTEEEEEEEEETTEEE
T ss_pred CCcEEEEEEecCCEEE
Confidence 3355555555554433
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=99.27 E-value=1.8e-11 Score=94.89 Aligned_cols=125 Identities=16% Similarity=0.157 Sum_probs=93.9
Q ss_pred CcccCChHHHHHHHHHHhcc--CCCCCEEEEEcCCCcHHHHHHHHHhC----CCceEEEEEcCHHHHHHHHHHhhhcCcc
Q psy10572 28 GADISSPHIHAQMLELLKDK--IKPGARILDIGSGSGYLTACLAYMAG----PEGRVYGVEHVMELAESSIKNIDKGNSE 101 (204)
Q Consensus 28 ~~~~~~~~~~~~~~~~l~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~ 101 (204)
|..++++.+...|+..+... .+++.+|||.|||+|.+...+.+.+. ....++|+|+++.++..|+.+.....
T Consensus 93 g~~~TP~~i~~~m~~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~-- 170 (328)
T d2f8la1 93 NHQMTPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQR-- 170 (328)
T ss_dssp GGCCCCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHT--
T ss_pred CeEECcHHHHHHHHHHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhh--
Confidence 55667777777776655432 35567999999999999988876541 34579999999999999998876533
Q ss_pred ccCccceEEEEecCCCCCCCCCCeeEEEECCCccc------------------------hhHHHHHhcCCCcEEEEEecC
Q psy10572 102 LLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFT------------------------IPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 102 ~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~------------------------~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
.+..+.++|.... ....+||+|++|+|+.. +++.+.+.|+|||++++.+++
T Consensus 171 ----~~~~~~~~d~~~~-~~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~ 245 (328)
T d2f8la1 171 ----QKMTLLHQDGLAN-LLVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPD 245 (328)
T ss_dssp ----CCCEEEESCTTSC-CCCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEG
T ss_pred ----hhhhhhccccccc-cccccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecC
Confidence 3566777775544 33468999999999731 357888999999999998875
Q ss_pred CC
Q psy10572 158 PF 159 (204)
Q Consensus 158 ~~ 159 (204)
..
T Consensus 246 ~~ 247 (328)
T d2f8la1 246 AM 247 (328)
T ss_dssp GG
T ss_pred cc
Confidence 53
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=99.23 E-value=2.1e-11 Score=95.67 Aligned_cols=155 Identities=19% Similarity=0.188 Sum_probs=107.8
Q ss_pred cccCCccc-CChHHHHHHHHHHhcc--CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCc
Q psy10572 24 QIGYGADI-SSPHIHAQMLELLKDK--IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNS 100 (204)
Q Consensus 24 ~~~~~~~~-~~~~~~~~~~~~l~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~ 100 (204)
.++.+.+. .+......+.+.+... ..++.+|||+.||+|.++..+++... +|+|+|.++.+++.|+.+++.++
T Consensus 183 ~i~p~sFfQ~N~~~~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~~~---~V~gvE~~~~ai~~A~~na~~n~- 258 (358)
T d1uwva2 183 TFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAA---SVVGVEGVPALVEKGQQNARLNG- 258 (358)
T ss_dssp ECCSSSCCCSBHHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSS---EEEEEESCHHHHHHHHHHHHHTT-
T ss_pred EECCchhhccchhhhhHHHHHHHHhhccCCCceEEEecccccccchhcccccc---EEEeccCcHHHHHHHHHhHHhcc-
Confidence 34444554 4555566665555543 45778999999999999999998764 99999999999999999998865
Q ss_pred cccCccceEEEEecCCCCCC----CCCCeeEEEECCCccchhH---HHHHhcCCCcEEEEEecCCCCcceEEEEeecCCc
Q psy10572 101 ELLDQGRVQFVVWNGKHGYE----REAPYDIIHVSPSYFTIPQ---KLLDQLVPGGRMVMPVGEPFKGQNLTIIDKLADG 173 (204)
Q Consensus 101 ~~~~~~~~~~~~~d~~~~~~----~~~~~D~v~~~~~~~~~~~---~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~ 173 (204)
..|+.++.++...... ....+|+|+++++-..+.+ .+.+ ++|.-+++++|.+......+. .....
T Consensus 259 ----i~n~~~~~~~~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~l~~-~~~~~ivYVSCnp~TlaRDl~---~l~~~ 330 (358)
T d1uwva2 259 ----LQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIK-LEPIRIVYVSCNPATLARDSE---ALLKA 330 (358)
T ss_dssp ----CCSEEEEECCTTSCCSSSGGGTTCCSEEEECCCTTCCHHHHHHHHH-HCCSEEEEEESCHHHHHHHHH---HHHHT
T ss_pred ----cccceeeecchhhhhhhhhhhhccCceEEeCCCCccHHHHHHHHHH-cCCCEEEEEeCCHHHHHHHHH---HHHHC
Confidence 5789999998765332 2367999999988766433 3333 478888888776443222222 22223
Q ss_pred eEEEeeeeeeeeeeeccc
Q psy10572 174 YTIVTTVVRGVRTNPLYR 191 (204)
Q Consensus 174 ~~~~~~~~~~~~~~pl~~ 191 (204)
.+.+ ..+..+.+.|.+.
T Consensus 331 gy~l-~~i~~~D~FP~T~ 347 (358)
T d1uwva2 331 GYTI-ARLAMLDMFPHTG 347 (358)
T ss_dssp TCEE-EEEEEECCSTTSS
T ss_pred CCeE-eEEEEEecCCCCc
Confidence 4566 6677777777654
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.21 E-value=7.7e-11 Score=90.60 Aligned_cols=129 Identities=20% Similarity=0.178 Sum_probs=100.3
Q ss_pred CcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccc
Q psy10572 28 GADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGR 107 (204)
Q Consensus 28 ~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~ 107 (204)
|..+.++.........+. +.++.+|||++||+|.-+..++......+.++++|.++..++..+.++...+ ..+
T Consensus 96 G~~~vQD~aS~l~~~~l~--~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~-----~~~ 168 (313)
T d1ixka_ 96 GLIYIQEASSMYPPVALD--PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLG-----VLN 168 (313)
T ss_dssp TSEEECCHHHHHHHHHHC--CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHT-----CCS
T ss_pred ceEEEecccccchhhccc--CCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHH-----hhc
Confidence 444445555555555565 6889999999999999999999887667899999999999999999887743 467
Q ss_pred eEEEEecCCCCCCCCCCeeEEEECCCccc----------------------------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 108 VQFVVWNGKHGYEREAPYDIIHVSPSYFT----------------------------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 108 ~~~~~~d~~~~~~~~~~~D~v~~~~~~~~----------------------------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
+.+...|..........||.|++++++.. ++..+.+.|||||+++.++++-.
T Consensus 169 i~~~~~d~~~~~~~~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~ 248 (313)
T d1ixka_ 169 VILFHSSSLHIGELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLE 248 (313)
T ss_dssp EEEESSCGGGGGGGCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCC
T ss_pred cccccccccccccccccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCC
Confidence 77777776544444568999999887632 33677899999999999999887
Q ss_pred Ccce
Q psy10572 160 KGQN 163 (204)
Q Consensus 160 ~~~~ 163 (204)
.++.
T Consensus 249 ~eEN 252 (313)
T d1ixka_ 249 PEEN 252 (313)
T ss_dssp GGGT
T ss_pred hHhH
Confidence 6653
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=99.19 E-value=8.7e-11 Score=86.65 Aligned_cols=95 Identities=18% Similarity=0.141 Sum_probs=76.7
Q ss_pred ccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceE
Q psy10572 30 DISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQ 109 (204)
Q Consensus 30 ~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~ 109 (204)
++..+.+...+++.+. +.++++|||||||+|.+|..+++... +++++|+++.+++.++++... .++++
T Consensus 3 FL~d~~i~~~iv~~~~--~~~~d~VlEIGpG~G~LT~~Ll~~~~---~v~avE~D~~l~~~l~~~~~~-------~~n~~ 70 (235)
T d1qama_ 3 FITSKHNIDKIMTNIR--LNEHDNIFEIGSGKGHFTLELVQRCN---FVTAIEIDHKLCKTTENKLVD-------HDNFQ 70 (235)
T ss_dssp BCCCHHHHHHHHTTCC--CCTTCEEEEECCTTSHHHHHHHHHSS---EEEEECSCHHHHHHHHHHTTT-------CCSEE
T ss_pred CcCCHHHHHHHHHhcC--CCCCCeEEEECCCchHHHHHHHhCcC---ceEEEeeccchHHHHHHHhhc-------ccchh
Confidence 3455666777777666 68899999999999999999998753 899999999999999987754 46899
Q ss_pred EEEecCCCCCCCCCCeeEEEECCCccc
Q psy10572 110 FVVWNGKHGYEREAPYDIIHVSPSYFT 136 (204)
Q Consensus 110 ~~~~d~~~~~~~~~~~D~v~~~~~~~~ 136 (204)
++++|+.....+......|++|.++.-
T Consensus 71 i~~~D~l~~~~~~~~~~~vv~NLPYnI 97 (235)
T d1qama_ 71 VLNKDILQFKFPKNQSYKIFGNIPYNI 97 (235)
T ss_dssp EECCCGGGCCCCSSCCCEEEEECCGGG
T ss_pred hhhhhhhhccccccccceeeeeehhhh
Confidence 999999876555444557889988854
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=99.14 E-value=2.5e-10 Score=91.43 Aligned_cols=126 Identities=16% Similarity=0.197 Sum_probs=98.7
Q ss_pred CCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCC------------CceEEEEEcCHHHHHHHHHH
Q psy10572 27 YGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGP------------EGRVYGVEHVMELAESSIKN 94 (204)
Q Consensus 27 ~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~------------~~~v~~vD~~~~~~~~a~~~ 94 (204)
.|++.+++++...|++.+. +.++.+|+|.+||+|.+...+.++... ...++|+|+++.+...|+.+
T Consensus 141 ~G~f~TP~~Iv~~mv~ll~--~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n 218 (425)
T d2okca1 141 AGQYFTPRPLIQAMVDCIN--PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMN 218 (425)
T ss_dssp CGGGCCCHHHHHHHHHHHC--CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHH
T ss_pred chhhccchhhhHhhheecc--CcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhh
Confidence 4789999999999999887 567889999999999999888776421 12589999999999999988
Q ss_pred hhhcCccccCccceEEEEecCCCCCCCCCCeeEEEECCCccc-----------------------hhHHHHHhcCCCcEE
Q psy10572 95 IDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHVSPSYFT-----------------------IPQKLLDQLVPGGRM 151 (204)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~-----------------------~~~~~~~~Lk~gG~l 151 (204)
...++ ....+..+...|..... ....||+|++|+|+.. +++.+.+.|++||++
T Consensus 219 ~~l~g---~~~~~~~i~~~d~l~~~-~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~ 294 (425)
T d2okca1 219 LYLHG---IGTDRSPIVCEDSLEKE-PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRA 294 (425)
T ss_dssp HHHTT---CCSSCCSEEECCTTTSC-CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEE
T ss_pred hhhcC---CccccceeecCchhhhh-cccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeE
Confidence 76644 12234556777766543 3468999999999831 457888999999999
Q ss_pred EEEecCC
Q psy10572 152 VMPVGEP 158 (204)
Q Consensus 152 ~~~~~~~ 158 (204)
.+.+++.
T Consensus 295 ~iI~p~~ 301 (425)
T d2okca1 295 AVVLPDN 301 (425)
T ss_dssp EEEEEHH
T ss_pred EEEechH
Confidence 9887754
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.14 E-value=7.5e-10 Score=84.26 Aligned_cols=129 Identities=16% Similarity=0.128 Sum_probs=94.8
Q ss_pred CcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccc
Q psy10572 28 GADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGR 107 (204)
Q Consensus 28 ~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~ 107 (204)
|..+.++.........+. ..++.+|||+++|+|+-+..++...++.+.++++|+++..++..+.++...+ ..+
T Consensus 74 G~~~~QD~sS~l~~~~L~--~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g-----~~~ 146 (293)
T d2b9ea1 74 GHLILQDRASCLPAMLLD--PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAG-----VSC 146 (293)
T ss_dssp TSEEECCTGGGHHHHHHC--CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTT-----CCS
T ss_pred cEEEEcCCcccccccccC--CCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcC-----ccc
Confidence 333333333334455555 6889999999999999999999887667899999999999999999998743 578
Q ss_pred eEEEEecCCCCCC---CCCCeeEEEECCCccc------------------------------hhHHHHHhcCCCcEEEEE
Q psy10572 108 VQFVVWNGKHGYE---REAPYDIIHVSPSYFT------------------------------IPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 108 ~~~~~~d~~~~~~---~~~~~D~v~~~~~~~~------------------------------~~~~~~~~Lk~gG~l~~~ 154 (204)
+.+...|...... ..+.||.|++++++.. ++..+. .++|||.|+.+
T Consensus 147 ~~~~~~d~~~~~~~~~~~~~fD~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYs 225 (293)
T d2b9ea1 147 CELAEEDFLAVSPSDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYS 225 (293)
T ss_dssp EEEEECCGGGSCTTCGGGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEE
T ss_pred eeeeehhhhhhcccccccceeeEEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEe
Confidence 8998888664322 1257999999988632 111222 47999999999
Q ss_pred ecCCCCcceE
Q psy10572 155 VGEPFKGQNL 164 (204)
Q Consensus 155 ~~~~~~~~~~ 164 (204)
+++-...+..
T Consensus 226 TCSl~~~ENe 235 (293)
T d2b9ea1 226 TCSLCQEENE 235 (293)
T ss_dssp ESCCCGGGTH
T ss_pred eccCChhHhH
Confidence 9887765443
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=99.14 E-value=7.7e-11 Score=86.11 Aligned_cols=111 Identities=21% Similarity=0.261 Sum_probs=83.8
Q ss_pred CChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEE
Q psy10572 32 SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFV 111 (204)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 111 (204)
+++.+...|++.+. ..++.+|||.|||+|.+...+.+.......++|+|+++..+..+ ....++
T Consensus 3 TP~~i~~~m~~l~~--~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~--------------~~~~~~ 66 (223)
T d2ih2a1 3 TPPEVVDFMVSLAE--APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP--------------PWAEGI 66 (223)
T ss_dssp CCHHHHHHHHHHCC--CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC--------------TTEEEE
T ss_pred CCHHHHHHHHHhcC--CCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc--------------ccceee
Confidence 56677888888776 67788999999999999988887764556899999998643222 245667
Q ss_pred EecCCCCCCCCCCeeEEEECCCccc-----------------------------------hhHHHHHhcCCCcEEEEEec
Q psy10572 112 VWNGKHGYEREAPYDIIHVSPSYFT-----------------------------------IPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 112 ~~d~~~~~~~~~~~D~v~~~~~~~~-----------------------------------~~~~~~~~Lk~gG~l~~~~~ 156 (204)
.+|..... ....||++++++++.. +++.+.+.|++||++.+.++
T Consensus 67 ~~~~~~~~-~~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p 145 (223)
T d2ih2a1 67 LADFLLWE-PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP 145 (223)
T ss_dssp ESCGGGCC-CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eeehhccc-cccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEe
Confidence 77765443 3468999999988621 23577789999999999887
Q ss_pred CCC
Q psy10572 157 EPF 159 (204)
Q Consensus 157 ~~~ 159 (204)
+..
T Consensus 146 ~~~ 148 (223)
T d2ih2a1 146 ATW 148 (223)
T ss_dssp GGG
T ss_pred eee
Confidence 654
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=99.11 E-value=1.1e-10 Score=89.52 Aligned_cols=108 Identities=20% Similarity=0.246 Sum_probs=82.2
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC-CCCCCeeE
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-EREAPYDI 127 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~ 127 (204)
+..++||.+|.|.|..+..+.+.. +..+++++|+++.+++.+++.+..........++++++.+|+.... ..+.+||+
T Consensus 76 ~~pk~VLiiG~G~G~~~~~ll~~~-~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDv 154 (312)
T d1uira_ 76 PEPKRVLIVGGGEGATLREVLKHP-TVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDV 154 (312)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTST-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEE
T ss_pred CCcceEEEeCCCchHHHHHHHhcC-CcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccE
Confidence 456799999999999999998875 5569999999999999999987542111124578999999987432 12367999
Q ss_pred EEECCCcc-------------chhHHHHHhcCCCcEEEEEecC
Q psy10572 128 IHVSPSYF-------------TIPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 128 v~~~~~~~-------------~~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
|+++...+ .+.+.+.+.|+|||++++...+
T Consensus 155 Ii~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s 197 (312)
T d1uira_ 155 VIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGM 197 (312)
T ss_dssp EEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred EEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecCC
Confidence 99865321 1457899999999999986543
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.10 E-value=3e-10 Score=86.11 Aligned_cols=129 Identities=18% Similarity=0.160 Sum_probs=95.4
Q ss_pred CcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccc
Q psy10572 28 GADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGR 107 (204)
Q Consensus 28 ~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~ 107 (204)
|...-+.......+..+. ..++.+|||+++|+|.-+..++... ..+.++++|+++..++..+.+++..+ ..+
T Consensus 82 G~~~vQD~sS~l~~~~L~--~~~g~~vLD~CAaPGgKt~~la~l~-~~~~i~a~d~~~~R~~~l~~~~~r~g-----~~~ 153 (284)
T d1sqga2 82 GWVTVQDASAQGCMTWLA--PQNGEHILDLCAAPGGKTTHILEVA-PEAQVVAVDIDEQRLSRVYDNLKRLG-----MKA 153 (284)
T ss_dssp TSEEECCHHHHTHHHHHC--CCTTCEEEEESCTTCHHHHHHHHHC-TTCEEEEEESSTTTHHHHHHHHHHTT-----CCC
T ss_pred cEEEeccccccccccccC--ccccceeEeccCccccchhhhhhhh-hhhhhhhhhcchhhhhhHhhhhhccc-----ccc
Confidence 334344444555555555 6889999999999999999998876 55799999999999999999988743 445
Q ss_pred eEEEEecCCCC-CCCCCCeeEEEECCCccc----------------------------hhHHHHHhcCCCcEEEEEecCC
Q psy10572 108 VQFVVWNGKHG-YEREAPYDIIHVSPSYFT----------------------------IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 108 ~~~~~~d~~~~-~~~~~~~D~v~~~~~~~~----------------------------~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
+.+...+.... ......||.|++++++.. ++..+.+.|||||+++.++++-
T Consensus 154 ~~~~~~~~~~~~~~~~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~ 233 (284)
T d1sqga2 154 TVKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV 233 (284)
T ss_dssp EEEECCTTCTHHHHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred eeeeccccccchhcccccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecC
Confidence 55555543321 123467999999988732 3357778899999999999988
Q ss_pred CCcceE
Q psy10572 159 FKGQNL 164 (204)
Q Consensus 159 ~~~~~~ 164 (204)
...+..
T Consensus 234 ~~~ENE 239 (284)
T d1sqga2 234 LPEENS 239 (284)
T ss_dssp CGGGTH
T ss_pred chhhCH
Confidence 766443
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=99.06 E-value=1.7e-11 Score=91.05 Aligned_cols=95 Identities=21% Similarity=0.207 Sum_probs=79.5
Q ss_pred ccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceE
Q psy10572 30 DISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQ 109 (204)
Q Consensus 30 ~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~ 109 (204)
++..+.+...+++.+. +.++.+|||||||+|.+|..+++... +++++|+++.+++.++.++.. .++++
T Consensus 11 FL~d~~ii~kIv~~~~--~~~~d~VLEIGpG~G~LT~~L~~~~~---~v~aIE~D~~l~~~l~~~~~~-------~~n~~ 78 (245)
T d1yuba_ 11 FLTSEKVLNQIIKQLN--LKETDTVYEIGTGKGHLTTKLAKISK---QVTSIELDSHLFNLSSEKLKL-------NTRVT 78 (245)
T ss_dssp BCCCTTTHHHHHHHCC--CCSSEEEEECSCCCSSCSHHHHHHSS---EEEESSSSCSSSSSSSCTTTT-------CSEEE
T ss_pred ccCCHHHHHHHHHhcC--CCCCCeEEEECCCccHHHHHHHhhcC---ceeEeeecccchhhhhhhhhh-------ccchh
Confidence 3466777888888887 78899999999999999999999753 999999999998888776543 35899
Q ss_pred EEEecCCCCCCCCCCeeEEEECCCccc
Q psy10572 110 FVVWNGKHGYEREAPYDIIHVSPSYFT 136 (204)
Q Consensus 110 ~~~~d~~~~~~~~~~~D~v~~~~~~~~ 136 (204)
++++|+.....+....+.|++|.++.-
T Consensus 79 ii~~D~l~~~~~~~~~~~vv~NLPY~I 105 (245)
T d1yuba_ 79 LIHQDILQFQFPNKQRYKIVGNIPYHL 105 (245)
T ss_dssp ECCSCCTTTTCCCSSEEEEEEECCSSS
T ss_pred hhhhhhhccccccceeeeEeeeeehhh
Confidence 999999887776677888999999864
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.05 E-value=2.8e-10 Score=85.88 Aligned_cols=110 Identities=18% Similarity=0.141 Sum_probs=82.5
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCc-----cccCccceEEEEecCCCCCCCC
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNS-----ELLDQGRVQFVVWNGKHGYERE 122 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~~d~~~~~~~~ 122 (204)
.....+||.+|+|.|..+..+.+.. ..+++.+|+++.+++.|++.+..... .....++++++.+|+.......
T Consensus 70 ~~~p~~vLiiG~G~G~~~~~~l~~~--~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~ 147 (276)
T d1mjfa_ 70 HPKPKRVLVIGGGDGGTVREVLQHD--VDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNN 147 (276)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTTSC--CSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHC
T ss_pred CCCCceEEEecCCchHHHHHHHHhC--CceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhcc
Confidence 3566799999999999998888753 34899999999999999987643210 0012468999999976443345
Q ss_pred CCeeEEEECCCcc----------chhHHHHHhcCCCcEEEEEecCCC
Q psy10572 123 APYDIIHVSPSYF----------TIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 123 ~~~D~v~~~~~~~----------~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
++||+|+++...+ .+.+.+.+.|+|||++++...+..
T Consensus 148 ~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~s~~ 194 (276)
T d1mjfa_ 148 RGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVY 194 (276)
T ss_dssp CCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEETT
T ss_pred CCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEecCCcc
Confidence 6899999875542 245889999999999998765443
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=99.01 E-value=1.4e-09 Score=81.88 Aligned_cols=109 Identities=21% Similarity=0.204 Sum_probs=84.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC-CCCCCeeE
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-EREAPYDI 127 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~ 127 (204)
....+||-+|.|.|..+..+.++. +..+++.+|+++.+++.|++.+..+.. ....++++++.+|+.... ....+||+
T Consensus 74 ~~p~~vLiiGgG~G~~~~~~l~~~-~~~~i~~VEID~~Vi~~a~~~~~~~~~-~~~d~r~~i~~~D~~~~l~~~~~~yDv 151 (274)
T d1iy9a_ 74 PNPEHVLVVGGGDGGVIREILKHP-SVKKATLVDIDGKVIEYSKKFLPSIAG-KLDDPRVDVQVDDGFMHIAKSENQYDV 151 (274)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCT-TCSEEEEEESCHHHHHHHHHHCHHHHT-TTTSTTEEEEESCSHHHHHTCCSCEEE
T ss_pred CCcceEEecCCCCcHHHHHHHhcC-CcceEEEecCCHHHHHHHHHhChhhcc-cccCCCeEEEechHHHHHhhcCCCCCE
Confidence 556799999999999999999875 456999999999999999998754211 124578999999977432 22467999
Q ss_pred EEECCCcc----------chhHHHHHhcCCCcEEEEEecCCC
Q psy10572 128 IHVSPSYF----------TIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 128 v~~~~~~~----------~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
|+++...+ .+.+.+.+.|+|+|++++...+..
T Consensus 152 Ii~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s~~ 193 (274)
T d1iy9a_ 152 IMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPW 193 (274)
T ss_dssp EEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTT
T ss_pred EEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEecCCcc
Confidence 99986442 245889999999999998776543
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=99.01 E-value=7e-10 Score=84.15 Aligned_cols=123 Identities=19% Similarity=0.183 Sum_probs=88.0
Q ss_pred HHHHHHHHHHhcc-CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe
Q psy10572 35 HIHAQMLELLKDK-IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW 113 (204)
Q Consensus 35 ~~~~~~~~~l~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 113 (204)
..+..++..+.-. .+..++||-||.|.|..+..+.++. +..+++++|+++.+++.+++.+..+.. ....++++++.+
T Consensus 73 ~~YhE~l~h~pl~~~~~pk~VLiiGgG~G~~~r~~l~~~-~~~~i~~VEIDp~Vi~~a~~~~~~~~~-~~~d~rv~v~~~ 150 (295)
T d1inla_ 73 FMYHEMLAHVPMFLHPNPKKVLIIGGGDGGTLREVLKHD-SVEKAILCEVDGLVIEAARKYLKQTSC-GFDDPRAEIVIA 150 (295)
T ss_dssp HHHHHHHHHHHHHHSSSCCEEEEEECTTCHHHHHHTTST-TCSEEEEEESCHHHHHHHHHHCHHHHG-GGGCTTEEEEES
T ss_pred hhhhhhhcchhHhhCCCCceEEEecCCchHHHHHHHhcC-CCceEEEecCCHHHHHHHHHHHHhhcc-cccCCCcEEEhh
Confidence 3444444433211 2455799999999999999998875 456899999999999999998754211 123578999999
Q ss_pred cCCCCCC-CCCCeeEEEECCCcc-----------chhHHHHHhcCCCcEEEEEecCCC
Q psy10572 114 NGKHGYE-REAPYDIIHVSPSYF-----------TIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 114 d~~~~~~-~~~~~D~v~~~~~~~-----------~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
|+..... ..++||+|+++...+ .+.+.+.+.|+|||++++...+..
T Consensus 151 Da~~~l~~~~~~yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~sp~ 208 (295)
T d1inla_ 151 NGAEYVRKFKNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPF 208 (295)
T ss_dssp CHHHHGGGCSSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEECCCTT
T ss_pred hHHHHHhcCCCCCCEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCChh
Confidence 9774332 236799999875432 245789999999999999776653
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=99.00 E-value=9e-10 Score=90.34 Aligned_cols=130 Identities=18% Similarity=0.167 Sum_probs=92.5
Q ss_pred CCcccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCC-----------------CceEEEEEcCHHHHH
Q psy10572 27 YGADISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGP-----------------EGRVYGVEHVMELAE 89 (204)
Q Consensus 27 ~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~-----------------~~~v~~vD~~~~~~~ 89 (204)
.|++++++++...|++.+. ..++.+|+|.+||+|.+...+.+.+.. ...++|+|+++.+..
T Consensus 143 ~GqfyTP~~Iv~~mv~ll~--~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~ 220 (524)
T d2ar0a1 143 AGQYFTPRPLIKTIIHLLK--PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRR 220 (524)
T ss_dssp --CCCCCHHHHHHHHHHHC--CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHH
T ss_pred cchhccccchhHhhhhccc--CccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHH
Confidence 4789999999999999887 677889999999999998877665411 125899999999999
Q ss_pred HHHHHhhhcCccccCccceEEEEecCCCC-CCCCCCeeEEEECCCccc--------------------hhHHHHHhcCCC
Q psy10572 90 SSIKNIDKGNSELLDQGRVQFVVWNGKHG-YEREAPYDIIHVSPSYFT--------------------IPQKLLDQLVPG 148 (204)
Q Consensus 90 ~a~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~v~~~~~~~~--------------------~~~~~~~~Lk~g 148 (204)
.|+.++..++..........+...+.... ......||+|++|+|+.. +++.+.+.|++|
T Consensus 221 la~~nl~l~~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~g 300 (524)
T d2ar0a1 221 LALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPG 300 (524)
T ss_dssp HHHHHHHTTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEE
T ss_pred HHHHHHHhhcccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhcccc
Confidence 99988765431110011122333332221 123357999999999831 568899999999
Q ss_pred cEEEEEecCC
Q psy10572 149 GRMVMPVGEP 158 (204)
Q Consensus 149 G~l~~~~~~~ 158 (204)
|++.+.++.+
T Consensus 301 Gr~aiIlP~~ 310 (524)
T d2ar0a1 301 GRAAVVVPDN 310 (524)
T ss_dssp EEEEEEEEHH
T ss_pred CcEEEEEehH
Confidence 9999987744
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.97 E-value=2e-09 Score=81.53 Aligned_cols=122 Identities=20% Similarity=0.169 Sum_probs=89.5
Q ss_pred HHHHHHHHHhccC-CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEec
Q psy10572 36 IHAQMLELLKDKI-KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWN 114 (204)
Q Consensus 36 ~~~~~~~~l~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d 114 (204)
.+..++..+.... ...++||-+|.|.|..+..+.+.. +..+++.+|+++.+++.+++.+..+.. ....++++++.+|
T Consensus 65 ~Yhe~l~h~~~~~~~~pk~VLiiGgG~G~~~r~~l~~~-~~~~i~~VEiD~~Vi~~~~~~f~~~~~-~~~~~r~~i~~~D 142 (290)
T d1xj5a_ 65 AYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHA-SIEQIDMCEIDKMVVDVSKQFFPDVAI-GYEDPRVNLVIGD 142 (290)
T ss_dssp HHHHHHHHHHHTTSSCCCEEEEETCSSSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHG-GGGSTTEEEEESC
T ss_pred HHHHHHhhHHHhhCCCCcceEEecCCchHHHHHHHhcc-cceeeEEecCCHHHHHHHHHhchhhhc-cccCCCcEEEEcc
Confidence 4444444333222 445799999999999999998875 445899999999999999998753211 1235789999999
Q ss_pred CCCCC--CCCCCeeEEEECCCccc----------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 115 GKHGY--EREAPYDIIHVSPSYFT----------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 115 ~~~~~--~~~~~~D~v~~~~~~~~----------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
+.... ..+++||+|+++...+. +.+.+.+.|+|||++++...+..
T Consensus 143 a~~~l~~~~~~~yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~ 199 (290)
T d1xj5a_ 143 GVAFLKNAAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESLW 199 (290)
T ss_dssp HHHHHHTSCTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCTT
T ss_pred HHHHHhhccccCccEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCCcH
Confidence 76433 23468999998765421 45899999999999999876654
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.96 E-value=1.7e-09 Score=81.79 Aligned_cols=123 Identities=15% Similarity=0.081 Sum_probs=89.1
Q ss_pred HHHHHHHHHHhcc-CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe
Q psy10572 35 HIHAQMLELLKDK-IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW 113 (204)
Q Consensus 35 ~~~~~~~~~l~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 113 (204)
..+..++..+.-. .+..++||-+|.|.|..+..+.+.. +..+++.+|+++.+++.|++.+..+.. ....++++++.+
T Consensus 62 ~~Yhe~l~h~~l~~~~~pk~vLiiGgG~G~~~~~~l~~~-~~~~v~~vEiD~~Vv~~a~~~~~~~~~-~~~d~rv~i~~~ 139 (285)
T d2o07a1 62 FSYQEMIANLPLCSHPNPRKVLIIGGGDGGVLREVVKHP-SVESVVQCEIDEDVIQVSKKFLPGMAI-GYSSSKLTLHVG 139 (285)
T ss_dssp HHHHHHHHHHHHTTSSSCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHG-GGGCTTEEEEES
T ss_pred HHHHHHhccHhhhhCcCcCeEEEeCCCchHHHHHHHHcC-CcceeeeccCCHHHHHHHHhhchhhcc-ccCCCCceEEEc
Confidence 3444544433211 2455799999999999999998875 456999999999999999998754211 123579999999
Q ss_pred cCCCCC-CCCCCeeEEEECCCcc----------chhHHHHHhcCCCcEEEEEecCCC
Q psy10572 114 NGKHGY-EREAPYDIIHVSPSYF----------TIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 114 d~~~~~-~~~~~~D~v~~~~~~~----------~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
|+.... ...++||+|+++...+ .+.+.+.+.|+|||++++...+..
T Consensus 140 Da~~~l~~~~~~yDvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~ 196 (285)
T d2o07a1 140 DGFEFMKQNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQW 196 (285)
T ss_dssp CHHHHHHTCSSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred cHHHHHhcCCCCCCEEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEeccchh
Confidence 976432 1236799999875432 245889999999999999876654
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.94 E-value=2e-09 Score=79.72 Aligned_cols=91 Identities=13% Similarity=0.135 Sum_probs=71.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEE
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDII 128 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 128 (204)
....+|+|||||+|.++..+++.. |+.+++.+|+ |..++.+ ...++++++.+|+.+..+ ..|++
T Consensus 80 ~~~~~vlDiGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~vi~~~-----------~~~~ri~~~~gd~~~~~p---~~D~~ 143 (244)
T d1fp1d2 80 EGISTLVDVGGGSGRNLELIISKY-PLIKGINFDL-PQVIENA-----------PPLSGIEHVGGDMFASVP---QGDAM 143 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTC-----------CCCTTEEEEECCTTTCCC---CEEEE
T ss_pred cCCcEEEEecCCCcHHHHHHHHHC-CCCeEEEecc-hhhhhcc-----------CCCCCeEEecCCcccccc---cceEE
Confidence 445799999999999999999998 8889999997 3333211 124689999999876532 36999
Q ss_pred EECCCccc--------hhHHHHHhcCCCcEEEEEe
Q psy10572 129 HVSPSYFT--------IPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 129 ~~~~~~~~--------~~~~~~~~Lk~gG~l~~~~ 155 (204)
++...+++ +++++.++|+|||++++..
T Consensus 144 ~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e 178 (244)
T d1fp1d2 144 ILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVE 178 (244)
T ss_dssp EEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 99888876 4578889999999998855
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.93 E-value=1.9e-09 Score=82.16 Aligned_cols=109 Identities=16% Similarity=0.104 Sum_probs=83.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC-CCCCCeeE
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-EREAPYDI 127 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~ 127 (204)
....+||-+|.|.|..+..+.+.. +-.+++.+|+++.+++.+++.+..+. .....++++++.+|+.... ....+||+
T Consensus 105 ~~pk~VLIiGgG~G~~~rellk~~-~v~~v~~VEID~~Vv~~a~~~~~~~~-~~~~dprv~i~i~Da~~~l~~~~~~yDv 182 (312)
T d2b2ca1 105 PDPKRVLIIGGGDGGILREVLKHE-SVEKVTMCEIDEMVIDVAKKFLPGMS-CGFSHPKLDLFCGDGFEFLKNHKNEFDV 182 (312)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCT-TCCEEEEECSCHHHHHHHHHHCTTTS-GGGGCTTEEEECSCHHHHHHHCTTCEEE
T ss_pred CCCCeEEEeCCCchHHHHHHHHcC-CcceEEEEcccHHHHHHHHhhchhhc-cccCCCCeEEEEchHHHHHHhCCCCCCE
Confidence 455799999999999999999875 44599999999999999999875422 1134578999999977432 12467999
Q ss_pred EEECCCcc----------chhHHHHHhcCCCcEEEEEecCCC
Q psy10572 128 IHVSPSYF----------TIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 128 v~~~~~~~----------~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
|+++...+ .+.+.+.+.|+|||+++....+..
T Consensus 183 II~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s~~ 224 (312)
T d2b2ca1 183 IITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGESVW 224 (312)
T ss_dssp EEECCC-------------HHHHHHHHEEEEEEEEEECCCTT
T ss_pred EEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCChH
Confidence 99975442 245788999999999999765544
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.92 E-value=9.3e-09 Score=77.20 Aligned_cols=96 Identities=19% Similarity=0.229 Sum_probs=78.4
Q ss_pred ccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceE
Q psy10572 30 DISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQ 109 (204)
Q Consensus 30 ~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~ 109 (204)
++..+.+...+++.+. +.++..|||||+|.|.+|..+++... +++++|+++.+++..++.+.... ...+++
T Consensus 3 FL~d~~i~~kIv~~~~--~~~~d~VlEIGPG~G~LT~~Ll~~~~---~v~aiE~D~~l~~~L~~~~~~~~----~~~~~~ 73 (278)
T d1zq9a1 3 ILKNPLIINSIIDKAA--LRPTDVVLEVGPGTGNMTVKLLEKAK---KVVACELDPRLVAELHKRVQGTP----VASKLQ 73 (278)
T ss_dssp EECCHHHHHHHHHHTC--CCTTCEEEEECCTTSTTHHHHHHHSS---EEEEEESCHHHHHHHHHHHTTST----TGGGEE
T ss_pred CcCCHHHHHHHHHHhC--CCCCCEEEEECCCchHHHHHHHhcCC---cEEEEEEccchhHHHHHHHhhhc----cccchh
Confidence 4456777888888776 77889999999999999999999753 99999999999999998876532 236899
Q ss_pred EEEecCCCCCCCCCCeeEEEECCCccc
Q psy10572 110 FVVWNGKHGYEREAPYDIIHVSPSYFT 136 (204)
Q Consensus 110 ~~~~d~~~~~~~~~~~D~v~~~~~~~~ 136 (204)
++.+|+.....+ .++.|+.|.++.-
T Consensus 74 ~i~~D~l~~~~~--~~~~vV~NLPY~I 98 (278)
T d1zq9a1 74 VLVGDVLKTDLP--FFDTCVANLPYQI 98 (278)
T ss_dssp EEESCTTTSCCC--CCSEEEEECCGGG
T ss_pred hhHHHHhhhhhh--hhhhhhcchHHHH
Confidence 999998876543 3678999988854
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=98.92 E-value=3.9e-09 Score=74.55 Aligned_cols=111 Identities=21% Similarity=0.202 Sum_probs=87.0
Q ss_pred HHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEec
Q psy10572 35 HIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWN 114 (204)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d 114 (204)
-+...+++.+. +.++..++|.++|.|+.+..+++. .++++|+|.++.+++.++... ..++.+++.+
T Consensus 5 Vll~Evl~~l~--~~~g~~~vD~T~G~GGhs~~iL~~---~~~viaiD~D~~ai~~a~~~~---------~~~~~~~~~~ 70 (182)
T d1wg8a2 5 VLYQEALDLLA--VRPGGVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVARAKGLH---------LPGLTVVQGN 70 (182)
T ss_dssp TTHHHHHHHHT--CCTTCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHTC---------CTTEEEEESC
T ss_pred hHHHHHHHhcC--CCCCCEEEEeCCCCcHHHHHHhcc---cCcEEEEhhhhhHHHHHhhcc---------ccceeEeehH
Confidence 35667777777 789999999999999999999885 359999999999999987642 3578999988
Q ss_pred CCCCC-----CCCCCeeEEEECCCccc---------------hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 115 GKHGY-----EREAPYDIIHVSPSYFT---------------IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 115 ~~~~~-----~~~~~~D~v~~~~~~~~---------------~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
+.... ...+.+|.|+++.++.. .++.....|++||.+++..+...
T Consensus 71 f~~~~~~l~~~~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs~ 135 (182)
T d1wg8a2 71 FRHLKRHLAALGVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHSL 135 (182)
T ss_dssp GGGHHHHHHHTTCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSHH
T ss_pred HHHHHHHHHHcCCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecccc
Confidence 65321 23467999999877632 34677889999999998877554
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.92 E-value=6.9e-09 Score=74.66 Aligned_cols=102 Identities=17% Similarity=0.139 Sum_probs=84.0
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEE
Q psy10572 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIH 129 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 129 (204)
++.+|+|+|||.|.-++.++-.. |+.+++.+|.+..-+...+..... ++..|+++++....... ...+||+|+
T Consensus 65 ~~~~ilDiGsGaG~PGi~laI~~-p~~~~~Lves~~KK~~FL~~~~~~-----L~L~nv~v~~~R~E~~~-~~~~fD~V~ 137 (207)
T d1jsxa_ 65 QGERFIDVGTGPGLPGIPLSIVR-PEAHFTLLDSLGKRVRFLRQVQHE-----LKLENIEPVQSRVEEFP-SEPPFDGVI 137 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHH-----TTCSSEEEEECCTTTSC-CCSCEEEEE
T ss_pred cCCceeeeeccCCceeeehhhhc-ccceEEEEecchHHHHHHHHHHHH-----cCCcceeeeccchhhhc-cccccceeh
Confidence 45799999999999999998877 788999999999999888887766 44678999999876543 346899999
Q ss_pred ECCCc--cchhHHHHHhcCCCcEEEEEecCC
Q psy10572 130 VSPSY--FTIPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 130 ~~~~~--~~~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
+.+.. ..+++-+.+.++++|.+++.-...
T Consensus 138 sRA~~~~~~ll~~~~~~l~~~g~~~~~KG~~ 168 (207)
T d1jsxa_ 138 SRAFASLNDMVSWCHHLPGEQGRFYALKGQM 168 (207)
T ss_dssp CSCSSSHHHHHHHHTTSEEEEEEEEEEESSC
T ss_pred hhhhcCHHHHHHHHHHhcCCCcEEEEECCCC
Confidence 87764 457788889999999999976544
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.90 E-value=3.1e-08 Score=70.60 Aligned_cols=116 Identities=18% Similarity=0.204 Sum_probs=73.6
Q ss_pred HHHHHHHhccCCCCCEEEEEcCCCcH----HHHHHHHHhC---CCceEEEEEcCHHHHHHHHHHhhhc------------
Q psy10572 38 AQMLELLKDKIKPGARILDIGSGSGY----LTACLAYMAG---PEGRVYGVEHVMELAESSIKNIDKG------------ 98 (204)
Q Consensus 38 ~~~~~~l~~~~~~~~~vLdiG~G~G~----~~~~l~~~~~---~~~~v~~vD~~~~~~~~a~~~~~~~------------ 98 (204)
..+.+.+.+ -.+..+||++|||+|. +++.+..... ...+++|+|+++..++.|+...-..
T Consensus 13 ~~L~~~~~~-~~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~ 91 (193)
T d1af7a2 13 PILAEHARR-RHGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQ 91 (193)
T ss_dssp HHHHHHHHH-SCSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHH
T ss_pred HHHHHHHhc-cCCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHh
Confidence 344444442 2455699999999997 4444444331 2357999999999999998543110
Q ss_pred ------Ccc-----c---cCccceEEEEecCCCC-CCCCCCeeEEEECCCccc--------hhHHHHHhcCCCcEEEEE
Q psy10572 99 ------NSE-----L---LDQGRVQFVVWNGKHG-YEREAPYDIIHVSPSYFT--------IPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 99 ------~~~-----~---~~~~~~~~~~~d~~~~-~~~~~~~D~v~~~~~~~~--------~~~~~~~~Lk~gG~l~~~ 154 (204)
... . .....+.+...+.... ..+.++||+|+|..++.. +++.+.+.|+|||.|++-
T Consensus 92 ~yf~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG 170 (193)
T d1af7a2 92 RYFMRGTGPHEGLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG 170 (193)
T ss_dssp HHEEECCTTSCSEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred hceeecCCCccceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 000 0 0011244455554432 233578999999988754 567888999999999874
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.80 E-value=1.5e-08 Score=74.96 Aligned_cols=90 Identities=13% Similarity=0.175 Sum_probs=69.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEE
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDII 128 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 128 (204)
....+|+|||||+|..+..+++.. |+.+++..|. +..++.+ ...++++++.+|+.+.. ..+|++
T Consensus 79 ~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~vi~~~-----------~~~~rv~~~~gD~f~~~---p~aD~~ 142 (244)
T d1fp2a2 79 DGLESIVDVGGGTGTTAKIICETF-PKLKCIVFDR-PQVVENL-----------SGSNNLTYVGGDMFTSI---PNADAV 142 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTC-----------CCBTTEEEEECCTTTCC---CCCSEE
T ss_pred cCceEEEEecCCccHHHHHHHHhC-CCCeEEEecC-HHHHHhC-----------cccCceEEEecCcccCC---CCCcEE
Confidence 345689999999999999999998 7889999997 3333322 12468999999987653 247999
Q ss_pred EECCCccc--------hhHHHHHhcCCC---cEEEEE
Q psy10572 129 HVSPSYFT--------IPQKLLDQLVPG---GRMVMP 154 (204)
Q Consensus 129 ~~~~~~~~--------~~~~~~~~Lk~g---G~l~~~ 154 (204)
++...+++ +++++.++|+|| |++++.
T Consensus 143 ~l~~vLHdw~d~~~~~iL~~~~~al~pgg~~~~lli~ 179 (244)
T d1fp2a2 143 LLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTII 179 (244)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEE
T ss_pred EEEeecccCChHHHHHHHHHHHHHcCcccCCcEEEEE
Confidence 99888876 457888999998 666663
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=98.77 E-value=2.6e-08 Score=70.13 Aligned_cols=97 Identities=20% Similarity=0.276 Sum_probs=75.0
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC--------
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-------- 119 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-------- 119 (204)
++++.+|||+||++|.++..+.+..+..+.++++|+.+- . ..+++.++.+|.....
T Consensus 20 ~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~---------~-------~i~~~~~~~~d~~~~~~~~~~~~~ 83 (180)
T d1ej0a_ 20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM---------D-------PIVGVDFLQGDFRDELVMKALLER 83 (180)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC---------C-------CCTTEEEEESCTTSHHHHHHHHHH
T ss_pred cCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc---------c-------ccCCceEeecccccchhhhhhhhh
Confidence 588999999999999999999988766789999997652 0 1357889999976321
Q ss_pred CCCCCeeEEEECCCccc-----------------hhHHHHHhcCCCcEEEEEecCCCC
Q psy10572 120 EREAPYDIIHVSPSYFT-----------------IPQKLLDQLVPGGRMVMPVGEPFK 160 (204)
Q Consensus 120 ~~~~~~D~v~~~~~~~~-----------------~~~~~~~~Lk~gG~l~~~~~~~~~ 160 (204)
....++|+|+++....- .+.-+.+.|++||.+++-++.+..
T Consensus 84 ~~~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~~ 141 (180)
T d1ej0a_ 84 VGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEG 141 (180)
T ss_dssp HTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTT
T ss_pred ccCcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCcc
Confidence 23467999999866421 224666899999999999987653
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=98.77 E-value=8.9e-09 Score=76.34 Aligned_cols=96 Identities=11% Similarity=0.037 Sum_probs=75.2
Q ss_pred ccCChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceE
Q psy10572 30 DISSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQ 109 (204)
Q Consensus 30 ~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~ 109 (204)
++..+.+...+++.+. +.++..|||||||.|.+|..+++... +++++|+++.+++..+..... .++++
T Consensus 3 FL~d~~~~~~Iv~~~~--~~~~d~vlEIGpG~G~LT~~Ll~~~~---~v~aiEiD~~l~~~L~~~~~~-------~~~~~ 70 (252)
T d1qyra_ 3 FLNDQFVIDSIVSAIN--PQKGQAMVEIGPGLAALTEPVGERLD---QLTVIELDRDLAARLQTHPFL-------GPKLT 70 (252)
T ss_dssp EECCHHHHHHHHHHHC--CCTTCCEEEECCTTTTTHHHHHTTCS---CEEEECCCHHHHHHHHTCTTT-------GGGEE
T ss_pred ccCCHHHHHHHHHhcC--CCCCCEEEEECCCchHHHHHHHccCC---ceEEEEeccchhHHHHHHhhh-------ccchh
Confidence 4556778888888887 78899999999999999999998753 899999999999999876543 35899
Q ss_pred EEEecCCCCCCCC-----CCeeEEEECCCccch
Q psy10572 110 FVVWNGKHGYERE-----APYDIIHVSPSYFTI 137 (204)
Q Consensus 110 ~~~~d~~~~~~~~-----~~~D~v~~~~~~~~~ 137 (204)
++.+|+.....+. +.--.|+.|.++.-.
T Consensus 71 ii~~D~l~~~~~~~~~~~~~~~~vvgNlPY~Is 103 (252)
T d1qyra_ 71 IYQQDAMTFNFGELAEKMGQPLRVFGNLPYNIS 103 (252)
T ss_dssp EECSCGGGCCHHHHHHHHTSCEEEEEECCTTTH
T ss_pred HHhhhhhhhcccccccccCCCeEEEecchHHHH
Confidence 9999987643221 223467788888653
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=98.66 E-value=1.3e-07 Score=69.07 Aligned_cols=111 Identities=14% Similarity=0.184 Sum_probs=72.5
Q ss_pred CChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHh---CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccce
Q psy10572 32 SSPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMA---GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRV 108 (204)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~---~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~ 108 (204)
..|.....+.+.+.. ++ +.+|||+|++.|..+..++..+ +..++++++|+++....... ....++
T Consensus 64 k~p~d~~~~~eli~~-~K-Pk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~----------~~~~~I 131 (232)
T d2bm8a1 64 KDPDTQAVYHDMLWE-LR-PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA----------SDMENI 131 (232)
T ss_dssp SCHHHHHHHHHHHHH-HC-CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG----------GGCTTE
T ss_pred cCHHHHHHHHHHHHH-hC-CCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhh----------ccccce
Confidence 345555555555542 33 5599999999998887776543 35679999999875432221 123689
Q ss_pred EEEEecCCCCC----CCCCCeeEEEECCCccc--hhH--HHHHhcCCCcEEEEE
Q psy10572 109 QFVVWNGKHGY----EREAPYDIIHVSPSYFT--IPQ--KLLDQLVPGGRMVMP 154 (204)
Q Consensus 109 ~~~~~d~~~~~----~~~~~~D~v~~~~~~~~--~~~--~~~~~Lk~gG~l~~~ 154 (204)
+++.+|..... .....+|.|+.+..-.. ... .+...|++||++++.
T Consensus 132 ~~i~gDs~~~~~~~~l~~~~~dlIfID~~H~~~~v~~~~~~~~lLk~GG~iIve 185 (232)
T d2bm8a1 132 TLHQGDCSDLTTFEHLREMAHPLIFIDNAHANTFNIMKWAVDHLLEEGDYFIIE 185 (232)
T ss_dssp EEEECCSSCSGGGGGGSSSCSSEEEEESSCSSHHHHHHHHHHHTCCTTCEEEEC
T ss_pred eeeecccccHHHHHHHHhcCCCEEEEcCCcchHHHHHHHHHhcccCcCCEEEEE
Confidence 99999865321 22346888888765322 111 345789999999984
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.63 E-value=1.5e-07 Score=69.38 Aligned_cols=91 Identities=12% Similarity=0.121 Sum_probs=68.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEE
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDII 128 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 128 (204)
....+|+|||||+|.++..+++.. |+.+++++|+.+. ++.+ ...++++++.+|+.+..+ . .|..
T Consensus 80 ~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dlp~v-i~~~-----------~~~~r~~~~~~d~~~~~P-~--ad~~ 143 (243)
T d1kyza2 80 EGLKSLVDVGGGTGAVINTIVSKY-PTIKGINFDLPHV-IEDA-----------PSYPGVEHVGGDMFVSIP-K--ADAV 143 (243)
T ss_dssp SSCSEEEEETCTTSHHHHHHHHHC-TTSEEEEEECTTT-TTTC-----------CCCTTEEEEECCTTTCCC-C--CSCE
T ss_pred cCCcEEEEecCCCcHHHHHHHHHC-CCCeEEEcccHHh-hhhc-----------ccCCceEEecccccccCC-C--cceE
Confidence 335799999999999999999998 8889999997553 2111 124689999999876533 2 4555
Q ss_pred EECCCccc--------hhHHHHHhcCCCcEEEEEe
Q psy10572 129 HVSPSYFT--------IPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 129 ~~~~~~~~--------~~~~~~~~Lk~gG~l~~~~ 155 (204)
++...++. +++++.++|+|||++++..
T Consensus 144 ~l~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d 178 (243)
T d1kyza2 144 FMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAE 178 (243)
T ss_dssp ECSSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEE
T ss_pred EEEEEeecCCHHHHHHHHHHHHHhcCCCceEEEEE
Confidence 66555544 5689999999999998853
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=98.58 E-value=1.7e-07 Score=68.55 Aligned_cols=104 Identities=16% Similarity=0.133 Sum_probs=82.1
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC---CCCCCee
Q psy10572 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY---EREAPYD 126 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D 126 (204)
...+|+|+|+|.|.-++.++-.. |+.+++.+|.+..-+...+..... ++..++.+++..+.... ...++||
T Consensus 70 ~~~~ilDiGSGaGfPGi~laI~~-p~~~v~Lves~~KK~~FL~~v~~~-----L~L~n~~i~~~R~E~~~~~~~~~~~~D 143 (239)
T d1xdza_ 70 QVNTICDVGAGAGFPSLPIKICF-PHLHVTIVDSLNKRITFLEKLSEA-----LQLENTTFCHDRAETFGQRKDVRESYD 143 (239)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHH-----HTCSSEEEEESCHHHHTTCTTTTTCEE
T ss_pred CCCeEEeecCCCchHHHHHHHhC-CCccceeecchHHHHHHHHHHHHH-----hCCCCcEEEeehhhhccccccccccce
Confidence 56799999999999999998877 788999999999988888777666 44678888887654221 1236799
Q ss_pred EEEECCCc--cchhHHHHHhcCCCcEEEEEecCCC
Q psy10572 127 IIHVSPSY--FTIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 127 ~v~~~~~~--~~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
+|++.+.. ..+++.+...++++|.+++.-....
T Consensus 144 ~v~sRAva~l~~ll~~~~~~l~~~g~~i~~KG~~~ 178 (239)
T d1xdza_ 144 IVTARAVARLSVLSELCLPLVKKNGLFVALKAASA 178 (239)
T ss_dssp EEEEECCSCHHHHHHHHGGGEEEEEEEEEEECC-C
T ss_pred EEEEhhhhCHHHHHHHHhhhcccCCEEEEECCCCh
Confidence 99987654 4577889999999999999766554
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.40 E-value=9.1e-07 Score=68.96 Aligned_cols=107 Identities=15% Similarity=0.089 Sum_probs=79.0
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCcccc----------CccceEEEEecCCCCC
Q psy10572 50 PGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELL----------DQGRVQFVVWNGKHGY 119 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~----------~~~~~~~~~~d~~~~~ 119 (204)
.+.+|||..||+|..++..+... +...|+.+|+|+.+++.+++|++.+..... ....+.+.+.|+....
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~-~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~ 123 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALET-PAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLM 123 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHS-SCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhC-CCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhh
Confidence 56799999999999999888876 345899999999999999999987642110 1123555666643222
Q ss_pred -CCCCCeeEEEECCCcc--chhHHHHHhcCCCcEEEEEecC
Q psy10572 120 -EREAPYDIIHVSPSYF--TIPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 120 -~~~~~~D~v~~~~~~~--~~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
.....||+|.+++--. .+++.+.+.++.||.|.++.-.
T Consensus 124 ~~~~~~fDvIDiDPfGs~~pfldsAi~a~~~~Gll~vTaTD 164 (375)
T d2dula1 124 AERHRYFHFIDLDPFGSPMEFLDTALRSAKRRGILGVTATD 164 (375)
T ss_dssp HHSTTCEEEEEECCSSCCHHHHHHHHHHEEEEEEEEEEECC
T ss_pred HhhcCcCCcccCCCCCCcHHHHHHHHHHhccCCEEEEEecC
Confidence 1235799999986332 3679999999999999886543
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=98.26 E-value=5e-06 Score=57.39 Aligned_cols=96 Identities=17% Similarity=0.105 Sum_probs=71.4
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC-------
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY------- 119 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~------- 119 (204)
++++.+|+-+|||. |.++..+++..+ ++++++|.++..++.+++.... ..+...+.....
T Consensus 24 ~~~g~~vlV~G~G~vG~~~~~~ak~~G--a~vi~v~~~~~r~~~a~~~ga~----------~~~~~~~~~~~~~~~~~~~ 91 (170)
T d1e3ja2 24 VQLGTTVLVIGAGPIGLVSVLAAKAYG--AFVVCTARSPRRLEVAKNCGAD----------VTLVVDPAKEEESSIIERI 91 (170)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHTTCS----------EEEECCTTTSCHHHHHHHH
T ss_pred CCCCCEEEEEcccccchhhHhhHhhhc--ccccccchHHHHHHHHHHcCCc----------EEEeccccccccchhhhhh
Confidence 78999999999996 888888888763 6999999999999999875322 122211111100
Q ss_pred --CCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 120 --EREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 120 --~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
.....+|+|+-..+....++.+.+.++++|++++.-
T Consensus 92 ~~~~g~g~D~vid~~g~~~~~~~a~~~~~~~G~iv~~G 129 (170)
T d1e3ja2 92 RSAIGDLPNVTIDCSGNEKCITIGINITRTGGTLMLVG 129 (170)
T ss_dssp HHHSSSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECS
T ss_pred hcccccCCceeeecCCChHHHHHHHHHHhcCCceEEEe
Confidence 112468999998888888899999999999998754
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=98.26 E-value=9.8e-07 Score=64.20 Aligned_cols=114 Identities=11% Similarity=0.058 Sum_probs=73.5
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 48 IKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 48 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
+.++.+|+|+|||+|.++..++... +...+.|+++--..-+ .+.... .....-+++...+-... .+....|+
T Consensus 64 ~~~~~~vvDlG~~pGgws~~~a~~~-~v~~V~g~~iG~d~~e--~P~~~~----~~~~ni~~~~~~~dv~~-l~~~~~D~ 135 (257)
T d2p41a1 64 VTPEGKVVDLGCGRGGWSYYCGGLK-NVREVKGLTKGGPGHE--EPIPMS----TYGWNLVRLQSGVDVFF-IPPERCDT 135 (257)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTST-TEEEEEEECCCSTTSC--CCCCCC----STTGGGEEEECSCCTTT-SCCCCCSE
T ss_pred ccCCCeEEEecCCCChHHHHHHhhc-CCCceeEEEecCcccc--CCcccc----ccccccccchhhhhHHh-cCCCcCCE
Confidence 6888899999999999999998875 4457777776322100 000000 01123345554443322 33478999
Q ss_pred EEECCCcc------------chhHHHHHhcCCCcEEEEEecCCCCcceEEEEee
Q psy10572 128 IHVSPSYF------------TIPQKLLDQLVPGGRMVMPVGEPFKGQNLTIIDK 169 (204)
Q Consensus 128 v~~~~~~~------------~~~~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~ 169 (204)
|+|+..-. .+++.+.+.|+|||-+++-+..+.....++.+++
T Consensus 136 vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~py~~~v~e~le~ 189 (257)
T d2p41a1 136 LLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYMSSVIEKMEA 189 (257)
T ss_dssp EEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCCSHHHHHHHHH
T ss_pred EEeeCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEEEECCCCChHHHHHHHH
Confidence 99986431 1446677899999999999998877666655444
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=98.07 E-value=2e-05 Score=54.88 Aligned_cols=95 Identities=13% Similarity=0.031 Sum_probs=70.2
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCC---------C
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGK---------H 117 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~---------~ 117 (204)
++++.+||-+|+|+ |.++..+++..+ ..+|+++|.++..++.+++.-.. .++...-. .
T Consensus 26 ~~~G~~VlV~GaG~iG~~~~~~ak~~G-a~~Vi~~~~~~~~~~~a~~lGa~-----------~vi~~~~~~~~~~~~~i~ 93 (182)
T d1vj0a2 26 SFAGKTVVIQGAGPLGLFGVVIARSLG-AENVIVIAGSPNRLKLAEEIGAD-----------LTLNRRETSVEERRKAIM 93 (182)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHTT-BSEEEEEESCHHHHHHHHHTTCS-----------EEEETTTSCHHHHHHHHH
T ss_pred CCCCCEEEEECCCccchhheecccccc-cccccccccccccccccccccce-----------EEEeccccchHHHHHHHH
Confidence 57889999999996 888889998874 23899999999999999764221 11111100 0
Q ss_pred CCCCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 118 GYEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 118 ~~~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
.......+|+|+...+.....+.+.+.|+++|++++.
T Consensus 94 ~~~~~~g~Dvvid~vG~~~~~~~a~~~l~~~G~iv~~ 130 (182)
T d1vj0a2 94 DITHGRGADFILEATGDSRALLEGSELLRRGGFYSVA 130 (182)
T ss_dssp HHTTTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEEC
T ss_pred HhhCCCCceEEeecCCchhHHHHHHHHhcCCCEEEEE
Confidence 0122346999998888888889999999999999764
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.06 E-value=2.4e-05 Score=53.95 Aligned_cols=97 Identities=13% Similarity=0.069 Sum_probs=71.2
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC--------
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG-------- 118 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 118 (204)
++++.+|+-+|+|+ |.++..+++..+ ..+++++|.++..++.|++.-.. .++..+-...
T Consensus 24 ~~~gd~VlI~G~G~iG~~~~~~a~~~G-~~~Vi~~d~~~~rl~~a~~~Ga~-----------~~~~~~~~~~~~~~~~~~ 91 (171)
T d1pl8a2 24 VTLGHKVLVCGAGPIGMVTLLVAKAMG-AAQVVVTDLSATRLSKAKEIGAD-----------LVLQISKESPQEIARKVE 91 (171)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHHTTCS-----------EEEECSSCCHHHHHHHHH
T ss_pred CCCCCEEEEECCCccHHHHHHHHHHcC-CceEEeccCCHHHHHHHHHhCCc-----------cccccccccccccccccc
Confidence 78899999999997 777788888763 34899999999999999764221 1111110100
Q ss_pred CCCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEEec
Q psy10572 119 YEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 119 ~~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~~ 156 (204)
......+|+|+...+.....+.+.+.++++|++++.-.
T Consensus 92 ~~~g~g~Dvvid~~G~~~~~~~a~~~~~~gG~iv~~G~ 129 (171)
T d1pl8a2 92 GQLGCKPEVTIECTGAEASIQAGIYATRSGGTLVLVGL 129 (171)
T ss_dssp HHHTSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSC
T ss_pred ccCCCCceEEEeccCCchhHHHHHHHhcCCCEEEEEec
Confidence 00124699999999888899999999999999988543
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=98.03 E-value=2.2e-05 Score=54.43 Aligned_cols=97 Identities=18% Similarity=0.204 Sum_probs=72.1
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEec---CCC---CC
Q psy10572 47 KIKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWN---GKH---GY 119 (204)
Q Consensus 47 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d---~~~---~~ 119 (204)
.++++.+|+-+|||. |..+..+++..+ ..+|+++|.++..++.+++.-.. .++... ..+ ..
T Consensus 24 ~~~~g~~VlI~GaG~vGl~~~q~ak~~G-a~~Vi~~d~~~~r~~~a~~lGa~-----------~~i~~~~~~~~~~v~~~ 91 (174)
T d1jqba2 24 DIEMGSSVVVIGIGAVGLMGIAGAKLRG-AGRIIGVGSRPICVEAAKFYGAT-----------DILNYKNGHIEDQVMKL 91 (174)
T ss_dssp TCCTTCCEEEECCSHHHHHHHHHHHTTT-CSCEEEECCCHHHHHHHHHHTCS-----------EEECGGGSCHHHHHHHH
T ss_pred CCCCCCEEEEEcCCcchhhhhhhhhccc-ccccccccchhhhHHHHHhhCcc-----------ccccccchhHHHHHHHH
Confidence 378999999999997 888888888763 23799999999999999764221 111111 000 11
Q ss_pred CCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 120 EREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 120 ~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
.....+|+|+...+....++.+.+.++|+|++++.=
T Consensus 92 t~g~G~D~vid~~g~~~~~~~a~~~~~~~G~iv~~G 127 (174)
T d1jqba2 92 TNGKGVDRVIMAGGGSETLSQAVKMVKPGGIISNIN 127 (174)
T ss_dssp TTTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEECC
T ss_pred hhccCcceEEEccCCHHHHHHHHHHHhcCCEEEEEe
Confidence 223459999999988888999999999999998853
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=98.01 E-value=6.8e-06 Score=60.15 Aligned_cols=82 Identities=17% Similarity=0.176 Sum_probs=60.7
Q ss_pred CEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCcccc----CccceEEEEecCCCCCCC-CCCee
Q psy10572 52 ARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELL----DQGRVQFVVWNGKHGYER-EAPYD 126 (204)
Q Consensus 52 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~d~~~~~~~-~~~~D 126 (204)
.+|||..||.|..+..++... ++|+++|.++.+....+..+.....+.. ...+++++++|..+.... ...||
T Consensus 90 ~~VlD~TaGlG~Da~vlA~~G---~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~D 166 (250)
T d2oyra1 90 PDVVDATAGLGRDAFVLASVG---CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQ 166 (250)
T ss_dssp CCEEETTCTTCHHHHHHHHHT---CCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCS
T ss_pred CEEEECCCcccHHHHHHHhCC---CEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCCC
Confidence 489999999999999999875 4999999999887776665543210000 134899999997643322 35699
Q ss_pred EEEECCCccc
Q psy10572 127 IIHVSPSYFT 136 (204)
Q Consensus 127 ~v~~~~~~~~ 136 (204)
+|++++++++
T Consensus 167 vIYlDPMFp~ 176 (250)
T d2oyra1 167 VVYLDPMFPH 176 (250)
T ss_dssp EEEECCCCCC
T ss_pred EEEECCCCcc
Confidence 9999999864
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=97.99 E-value=1.7e-05 Score=54.89 Aligned_cols=95 Identities=15% Similarity=0.133 Sum_probs=70.6
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC-----CCC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG-----YER 121 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~ 121 (204)
++++.+|+-+|||. |..+..+++..+ ...++++|.++..++.+++.-.. .++..+-.+. ...
T Consensus 26 ~~~g~~VlI~G~G~iG~~~~~~ak~~g-~~~v~~~~~~~~k~~~a~~~Ga~-----------~~i~~~~~~~~~~i~~~t 93 (174)
T d1f8fa2 26 VTPASSFVTWGAGAVGLSALLAAKVCG-ASIIIAVDIVESRLELAKQLGAT-----------HVINSKTQDPVAAIKEIT 93 (174)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHHT-CSEEEEEESCHHHHHHHHHHTCS-----------EEEETTTSCHHHHHHHHT
T ss_pred CCCCCEEEEeCCCHHHhhhhhcccccc-cceeeeeccHHHHHHHHHHcCCe-----------EEEeCCCcCHHHHHHHHc
Confidence 78999999999997 777888888874 34788899999999998764221 2222221110 012
Q ss_pred CCCeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 122 EAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 122 ~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
++.+|+|+...+.....+.+.++++|+|++++.
T Consensus 94 ~gg~D~vid~~G~~~~~~~~~~~~~~~G~i~~~ 126 (174)
T d1f8fa2 94 DGGVNFALESTGSPEILKQGVDALGILGKIAVV 126 (174)
T ss_dssp TSCEEEEEECSCCHHHHHHHHHTEEEEEEEEEC
T ss_pred CCCCcEEEEcCCcHHHHHHHHhcccCceEEEEE
Confidence 357999999988888899999999999999874
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.92 E-value=2.8e-05 Score=59.20 Aligned_cols=79 Identities=14% Similarity=0.135 Sum_probs=62.0
Q ss_pred cccCChHHHHHHHHHHhcc--C--CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccC
Q psy10572 29 ADISSPHIHAQMLELLKDK--I--KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLD 104 (204)
Q Consensus 29 ~~~~~~~~~~~~~~~l~~~--~--~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~ 104 (204)
.++..+.+...+++.+.-. . ..+..|||||.|.|.+|..+.....+ -+++++|.++...+..+..+..
T Consensus 18 nfL~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~-~~v~~iE~D~~~~~~L~~~~~~------- 89 (322)
T d1i4wa_ 18 KYLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCP-RQYSLLEKRSSLYKFLNAKFEG------- 89 (322)
T ss_dssp CCBCCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCC-SEEEEECCCHHHHHHHHHHTTT-------
T ss_pred cccCCHHHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCC-CEEEEEECCHHHHHHHHHhccC-------
Confidence 3457888888888887511 1 24678999999999999999987532 3899999999999998876542
Q ss_pred ccceEEEEecCC
Q psy10572 105 QGRVQFVVWNGK 116 (204)
Q Consensus 105 ~~~~~~~~~d~~ 116 (204)
.++.++++|+.
T Consensus 90 -~~~~ii~~D~l 100 (322)
T d1i4wa_ 90 -SPLQILKRDPY 100 (322)
T ss_dssp -SSCEEECSCTT
T ss_pred -CCcEEEeCchh
Confidence 57899999875
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.90 E-value=4.4e-06 Score=57.68 Aligned_cols=96 Identities=19% Similarity=0.285 Sum_probs=66.7
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEE-ecCCC-CCCCCC
Q psy10572 47 KIKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVV-WNGKH-GYEREA 123 (204)
Q Consensus 47 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~d~~~-~~~~~~ 123 (204)
.++++.+|+-+|+|. |.++..+++..+ ++++++|.++..++.+++.-.. .++. .+-.+ .....+
T Consensus 24 ~~~~g~~vlI~GaG~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~a~~lGa~-----------~~i~~~~~~~~~~~~~~ 90 (168)
T d1piwa2 24 GCGPGKKVGIVGLGGIGSMGTLISKAMG--AETYVISRSSRKREDAMKMGAD-----------HYIATLEEGDWGEKYFD 90 (168)
T ss_dssp TCSTTCEEEEECCSHHHHHHHHHHHHHT--CEEEEEESSSTTHHHHHHHTCS-----------EEEEGGGTSCHHHHSCS
T ss_pred CcCCCCEEEEECCCCcchhHHHHhhhcc--ccccccccchhHHHHhhccCCc-----------EEeeccchHHHHHhhhc
Confidence 378999999999995 888888888764 6999999999999998775321 1121 11110 001135
Q ss_pred CeeEEEECCCcc--chhHHHHHhcCCCcEEEEEe
Q psy10572 124 PYDIIHVSPSYF--TIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 124 ~~D~v~~~~~~~--~~~~~~~~~Lk~gG~l~~~~ 155 (204)
.+|.++...... ..++.+.+.|+++|++++.-
T Consensus 91 ~~d~vi~~~~~~~~~~~~~~~~~l~~~G~iv~~G 124 (168)
T d1piwa2 91 TFDLIVVCASSLTDIDFNIMPKAMKVGGRIVSIS 124 (168)
T ss_dssp CEEEEEECCSCSTTCCTTTGGGGEEEEEEEEECC
T ss_pred ccceEEEEecCCccchHHHHHHHhhccceEEEec
Confidence 699888754432 24577899999999998753
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=97.86 E-value=5.4e-05 Score=52.36 Aligned_cols=96 Identities=15% Similarity=0.059 Sum_probs=72.5
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC-------
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY------- 119 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~------- 119 (204)
++++.+|+-+|||. |.++..+++..+ ...++.+|.++..++.+++.-.. .++...-.+..
T Consensus 26 v~~G~~VlV~G~G~iGl~a~~~ak~~G-a~~Vi~~d~~~~r~~~a~~~Ga~-----------~~i~~~~~~~~~~~~~~~ 93 (174)
T d1e3ia2 26 VTPGSTCAVFGLGCVGLSAIIGCKIAG-ASRIIAIDINGEKFPKAKALGAT-----------DCLNPRELDKPVQDVITE 93 (174)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHHTTCS-----------EEECGGGCSSCHHHHHHH
T ss_pred CCCCCEEEEECCChHHHHHHHHHHHhC-CceeeeeccchHHHHHHHHhCCC-----------cccCCccchhhhhhhHhh
Confidence 68999999999998 889999999874 45899999999999998875322 11211101100
Q ss_pred CCCCCeeEEEECCCccchhHHHHHhcCCC-cEEEEEe
Q psy10572 120 EREAPYDIIHVSPSYFTIPQKLLDQLVPG-GRMVMPV 155 (204)
Q Consensus 120 ~~~~~~D~v~~~~~~~~~~~~~~~~Lk~g-G~l~~~~ 155 (204)
.....+|+++-..+....++...+.++++ |.+++.-
T Consensus 94 ~~~~G~d~vie~~G~~~~~~~a~~~~~~g~G~~v~vG 130 (174)
T d1e3ia2 94 LTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVG 130 (174)
T ss_dssp HHTSCBSEEEESSCCHHHHHHHHHTBCTTTCEEEECC
T ss_pred hhcCCCcEEEEecccchHHHHHHHHhhcCCeEEEecC
Confidence 12356999999999999999999999996 9998754
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=97.86 E-value=5e-05 Score=52.32 Aligned_cols=96 Identities=15% Similarity=0.072 Sum_probs=70.9
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCC--C---CCCC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGK--H---GYER 121 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~--~---~~~~ 121 (204)
++++..||-+|+|. |..+..+++..+ ...++++|.++..++.+++.... .++..+-. + ....
T Consensus 30 ~~~g~~vli~GaG~vG~~~~~~a~~~g-~~~vv~~~~~~~k~~~~~~~ga~-----------~~i~~~~~~~~~~~~~~~ 97 (172)
T d1h2ba2 30 LYPGAYVAIVGVGGLGHIAVQLLKVMT-PATVIALDVKEEKLKLAERLGAD-----------HVVDARRDPVKQVMELTR 97 (172)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHC-CCEEEEEESSHHHHHHHHHTTCS-----------EEEETTSCHHHHHHHHTT
T ss_pred cCCCCEEEEeCCChHHHHHHHHHHhhc-CcccccccchhHHHHHHhhcccc-----------eeecCcccHHHHHHHhhC
Confidence 68899999999997 777788888763 45899999999998888865322 22221100 0 0112
Q ss_pred CCCeeEEEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 122 EAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 122 ~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
...+|+|+...+....++...+.|+++|++++.-
T Consensus 98 ~~g~d~vid~~g~~~~~~~a~~~l~~~G~iv~~G 131 (172)
T d1h2ba2 98 GRGVNVAMDFVGSQATVDYTPYLLGRMGRLIIVG 131 (172)
T ss_dssp TCCEEEEEESSCCHHHHHHGGGGEEEEEEEEECC
T ss_pred CCCceEEEEecCcchHHHHHHHHHhCCCEEEEEe
Confidence 3469999999988888999999999999998743
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=97.85 E-value=2.3e-05 Score=53.86 Aligned_cols=95 Identities=17% Similarity=0.122 Sum_probs=70.1
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCC-CCCCCCCCe
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGK-HGYEREAPY 125 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~ 125 (204)
++++.+|+-+|+|. |.++..+++..+ ++++++|.++...+.+++.-.. .++...-. ........+
T Consensus 28 ~~~G~~VlI~GaG~vG~~a~qlak~~G--a~~i~~~~~~~~~~~a~~lGad-----------~~i~~~~~~~~~~~~~~~ 94 (168)
T d1uufa2 28 AGPGKKVGVVGIGGLGHMGIKLAHAMG--AHVVAFTTSEAKREAAKALGAD-----------EVVNSRNADEMAAHLKSF 94 (168)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSGGGHHHHHHHTCS-----------EEEETTCHHHHHTTTTCE
T ss_pred CCCCCEEEEeccchHHHHHHHHhhccc--ccchhhccchhHHHHHhccCCc-----------EEEECchhhHHHHhcCCC
Confidence 78999999999997 888888888763 5888999999888887654221 12221101 111223569
Q ss_pred eEEEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 126 DIIHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 126 D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
|.++........++...+.++++|++++.-
T Consensus 95 D~vid~~g~~~~~~~~~~~l~~~G~iv~~G 124 (168)
T d1uufa2 95 DFILNTVAAPHNLDDFTTLLKRDGTMTLVG 124 (168)
T ss_dssp EEEEECCSSCCCHHHHHTTEEEEEEEEECC
T ss_pred ceeeeeeecchhHHHHHHHHhcCCEEEEec
Confidence 999998888888899999999999998853
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=97.83 E-value=9.2e-05 Score=52.13 Aligned_cols=96 Identities=15% Similarity=0.096 Sum_probs=67.6
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe---cCCC---CC
Q psy10572 47 KIKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW---NGKH---GY 119 (204)
Q Consensus 47 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---d~~~---~~ 119 (204)
.++++.+||.+|||. |..+..+++.. ...+++++|.++..++.|++.-.. .++.. +..+ ..
T Consensus 22 ~v~~G~tVlV~GaG~vGl~a~~~ak~~-ga~~Vi~~d~~~~rl~~a~~~Ga~-----------~~~~~~~~~~~~~i~~~ 89 (195)
T d1kola2 22 GVGPGSTVYVAGAGPVGLAAAASARLL-GAAVVIVGDLNPARLAHAKAQGFE-----------IADLSLDTPLHEQIAAL 89 (195)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTTCE-----------EEETTSSSCHHHHHHHH
T ss_pred CCCCCCEEEEECcCHHHHHHHHHHHhh-cccceeeecccchhhHhhhhcccc-----------EEEeCCCcCHHHHHHHH
Confidence 379999999999998 77778888876 445999999999999999875321 11111 1000 01
Q ss_pred CCCCCeeEEEECCCc---------------cchhHHHHHhcCCCcEEEEE
Q psy10572 120 EREAPYDIIHVSPSY---------------FTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 120 ~~~~~~D~v~~~~~~---------------~~~~~~~~~~Lk~gG~l~~~ 154 (204)
.....+|+++-.... ...++.+.+.++|+|++.+.
T Consensus 90 t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~ 139 (195)
T d1kola2 90 LGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP 139 (195)
T ss_dssp HSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred hCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEe
Confidence 123468999866442 23678999999999999875
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.70 E-value=0.00011 Score=50.15 Aligned_cols=94 Identities=15% Similarity=0.052 Sum_probs=66.7
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC---C-CCC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG---Y-ERE 122 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~---~-~~~ 122 (204)
++++.+|+-+|+|. |.++..+++..+ ++++++|.++..++.+++.-.. .++...-.+. . ...
T Consensus 25 ~~~g~~VlV~GaG~vG~~~~~~ak~~G--~~Vi~~~~~~~~~~~a~~~Ga~-----------~~i~~~~~~~~~~~~~~~ 91 (166)
T d1llua2 25 ARPGQWVAISGIGGLGHVAVQYARAMG--LHVAAIDIDDAKLELARKLGAS-----------LTVNARQEDPVEAIQRDI 91 (166)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHTTCS-----------EEEETTTSCHHHHHHHHH
T ss_pred CCCCCEEEEeeccccHHHHHHHHHHcC--CccceecchhhHHHhhhccCcc-----------ccccccchhHHHHHHHhh
Confidence 78999999999997 888888888864 6999999999999988764221 1222111100 0 001
Q ss_pred CCeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 123 APYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 123 ~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
..+|.++........++...+.|+++|++++.
T Consensus 92 ~g~~~~i~~~~~~~~~~~~~~~l~~~G~iv~~ 123 (166)
T d1llua2 92 GGAHGVLVTAVSNSAFGQAIGMARRGGTIALV 123 (166)
T ss_dssp SSEEEEEECCSCHHHHHHHHTTEEEEEEEEEC
T ss_pred cCCcccccccccchHHHHHHHHhcCCcEEEEE
Confidence 33666666666667788999999999999874
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=97.67 E-value=0.00021 Score=49.27 Aligned_cols=97 Identities=15% Similarity=0.109 Sum_probs=69.2
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCC-------C
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHG-------Y 119 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~-------~ 119 (204)
++++.+|+-+|||. |..+..+++..+ ..+|+++|.++..++.+++.-.. .++...-.+. .
T Consensus 25 ~~~G~~VlV~GaGgvGl~a~~~ak~~G-~~~Vi~~d~~~~kl~~a~~lGa~-----------~~i~~~~~d~~~~~~~~~ 92 (174)
T d1p0fa2 25 VTPGSTCAVFGLGGVGFSAIVGCKAAG-ASRIIGVGTHKDKFPKAIELGAT-----------ECLNPKDYDKPIYEVICE 92 (174)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGGHHHHHHTTCS-----------EEECGGGCSSCHHHHHHH
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHcC-CceeeccCChHHHHHHHHHcCCc-----------EEEcCCCchhHHHHHHHH
Confidence 78999999999997 777788888773 45899999999999999875322 1221110111 0
Q ss_pred CCCCCeeEEEECCCccchhHHHHHhcCC-CcEEEEEec
Q psy10572 120 EREAPYDIIHVSPSYFTIPQKLLDQLVP-GGRMVMPVG 156 (204)
Q Consensus 120 ~~~~~~D~v~~~~~~~~~~~~~~~~Lk~-gG~l~~~~~ 156 (204)
.....+|+++.........+.....+++ +|.+++.-.
T Consensus 93 ~~~~G~d~vid~~g~~~~~~~~~~~~~~~~G~~v~vG~ 130 (174)
T d1p0fa2 93 KTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLGL 130 (174)
T ss_dssp HTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECCC
T ss_pred hcCCCCcEEEEcCCCchHHHHHHHHHHHhcCceEEEEE
Confidence 1235699999998888888888877765 588877443
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=97.59 E-value=0.00016 Score=49.45 Aligned_cols=95 Identities=16% Similarity=0.172 Sum_probs=68.5
Q ss_pred CCCCCEEEEEcC-CC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCC------CC
Q psy10572 48 IKPGARILDIGS-GS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKH------GY 119 (204)
Q Consensus 48 ~~~~~~vLdiG~-G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~------~~ 119 (204)
++++.+|+-+|+ |. |.++..+++.. ....|+++|.++..++.+++.-.. .++..+-.+ ..
T Consensus 25 ~~~g~~vlV~G~~G~vG~~~~~~~~~~-g~~~V~~~~~~~~~~~~~~~~Ga~-----------~~i~~~~~~~~~~~~~~ 92 (170)
T d1jvba2 25 LDPTKTLLVVGAGGGLGTMAVQIAKAV-SGATIIGVDVREEAVEAAKRAGAD-----------YVINASMQDPLAEIRRI 92 (170)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHH-TCCEEEEEESSHHHHHHHHHHTCS-----------EEEETTTSCHHHHHHHH
T ss_pred CCCCCEEEEEeccccceeeeeeccccc-ccccccccccchhhHHHHHHcCCc-----------eeeccCCcCHHHHHHHH
Confidence 789999999997 43 67777777776 345899999999999998765221 112211110 00
Q ss_pred CCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 120 EREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 120 ~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
.....+|+++...+.....+.+.+.++|+|++++.
T Consensus 93 ~~~~~~d~vid~~g~~~~~~~a~~~l~~~G~iv~~ 127 (170)
T d1jvba2 93 TESKGVDAVIDLNNSEKTLSVYPKALAKQGKYVMV 127 (170)
T ss_dssp TTTSCEEEEEESCCCHHHHTTGGGGEEEEEEEEEC
T ss_pred hhcccchhhhcccccchHHHhhhhhcccCCEEEEe
Confidence 12356999999888888888999999999999875
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.55 E-value=0.00022 Score=48.58 Aligned_cols=93 Identities=19% Similarity=0.094 Sum_probs=66.1
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCC------
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE------ 120 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------ 120 (204)
++++.+||-.|+|+ |..+..+++..+ +++++++.++..++.+++.-.. .++. . .+...
T Consensus 25 ~~~g~~vlv~G~G~iG~~a~~~a~~~g--~~v~~~~~~~~r~~~~k~~Ga~-----------~~~~-~-~~~~~~~~~~~ 89 (168)
T d1rjwa2 25 AKPGEWVAIYGIGGLGHVAVQYAKAMG--LNVVAVDIGDEKLELAKELGAD-----------LVVN-P-LKEDAAKFMKE 89 (168)
T ss_dssp CCTTCEEEEECCSTTHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHTTCS-----------EEEC-T-TTSCHHHHHHH
T ss_pred CCCCCEEEEeecccchhhhhHHHhcCC--CeEeccCCCHHHhhhhhhcCcc-----------eecc-c-ccchhhhhccc
Confidence 78999999999997 777777888753 5899999999999888764221 1111 1 11100
Q ss_pred CCCCeeEEEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 121 REAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 121 ~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
....+|.++.+.+....++...+.|+++|.+++.-
T Consensus 90 ~~~~~~~~v~~~~~~~~~~~a~~~l~~~G~i~~~g 124 (168)
T d1rjwa2 90 KVGGVHAAVVTAVSKPAFQSAYNSIRRGGACVLVG 124 (168)
T ss_dssp HHSSEEEEEESSCCHHHHHHHHHHEEEEEEEEECC
T ss_pred ccCCCceEEeecCCHHHHHHHHHHhccCCceEecc
Confidence 01335666677777778899999999999998853
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=97.42 E-value=0.0012 Score=44.98 Aligned_cols=99 Identities=15% Similarity=0.124 Sum_probs=70.9
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC-------
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY------- 119 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~------- 119 (204)
++++.+||-.|||. |.++..+++..+ ...|+++|.++...+.+++.-.. .++...-....
T Consensus 26 ~~~G~tVlI~GaGGvG~~aiq~ak~~G-~~~vi~~~~~~~k~~~ak~lGa~-----------~~i~~~~~~~~~~~~~~~ 93 (176)
T d2fzwa2 26 LEPGSVCAVFGLGGVGLAVIMGCKVAG-ASRIIGVDINKDKFARAKEFGAT-----------ECINPQDFSKPIQEVLIE 93 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGGHHHHHHHTCS-----------EEECGGGCSSCHHHHHHH
T ss_pred CCCCCEEEEecchhHHHHHHHHHHHHh-cCceEEEcccHHHHHHHHHhCCc-----------EEEeCCchhhHHHHHHHH
Confidence 78999999999985 667777788773 45899999999999988865322 11211101000
Q ss_pred CCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEEecCC
Q psy10572 120 EREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 120 ~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
.....+|+|+.........+.+..++++||.+++.....
T Consensus 94 ~~~~g~D~vid~~G~~~~~~~~~~~~~~g~~~~~v~~~~ 132 (176)
T d2fzwa2 94 MTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVA 132 (176)
T ss_dssp HTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCC
T ss_pred HcCCCCcEeeecCCCHHHHHHHHHhhcCCceeEEEEeec
Confidence 123569999999888889999999999998877654433
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=97.38 E-value=0.00062 Score=46.87 Aligned_cols=99 Identities=13% Similarity=0.044 Sum_probs=67.5
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCC-C---CCCCC
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGK-H---GYERE 122 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~-~---~~~~~ 122 (204)
++++.+|+-+|||. |..+..+++.. ...+|+++|.++..++.|++.-.... +.....+.. . .....
T Consensus 27 ~~~g~tVlI~G~GgvGl~ai~~ak~~-G~~~Vi~vd~~~~kl~~Ak~~GA~~~--------in~~~~~~~~~~~~~~~~g 97 (176)
T d1d1ta2 27 VKPGSTCVVFGLGGVGLSVIMGCKSA-GASRIIGIDLNKDKFEKAMAVGATEC--------ISPKDSTKPISEVLSEMTG 97 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHHHHTCSEE--------ECGGGCSSCHHHHHHHHHT
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHc-CCceEEEecCcHHHHHHHHhcCCcEE--------ECccccchHHHHHHHHhcc
Confidence 78899999999997 77778888876 34589999999999999988754311 000011110 0 00123
Q ss_pred CCeeEEEECCCccchhHHHHHhc-CCCcEEEEEe
Q psy10572 123 APYDIIHVSPSYFTIPQKLLDQL-VPGGRMVMPV 155 (204)
Q Consensus 123 ~~~D~v~~~~~~~~~~~~~~~~L-k~gG~l~~~~ 155 (204)
..+|+++.........+.....+ +.+|.+++.-
T Consensus 98 ~G~d~vi~~~g~~~~~~~a~~~~~~~~G~~v~vG 131 (176)
T d1d1ta2 98 NNVGYTFEVIGHLETMIDALASCHMNYGTSVVVG 131 (176)
T ss_dssp SCCCEEEECSCCHHHHHHHHTTSCTTTCEEEECS
T ss_pred ccceEEEEeCCchHHHHHHHHHhhcCCeEEEEEE
Confidence 56999998888877776666665 4558887754
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.35 E-value=6.3e-05 Score=51.89 Aligned_cols=93 Identities=25% Similarity=0.251 Sum_probs=65.0
Q ss_pred CCCCCEEEEEcC-C-CcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe---cCCC---CC
Q psy10572 48 IKPGARILDIGS-G-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW---NGKH---GY 119 (204)
Q Consensus 48 ~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---d~~~---~~ 119 (204)
++++.+||-.|+ | .|..+..+++..+ +++++++.++...+.+++.-. . .++.. |..+ ..
T Consensus 26 ~~~g~~VlV~Ga~G~vG~~aiq~a~~~G--~~vi~~~~~~~~~~~~~~~Ga---------~--~vi~~~~~~~~~~i~~~ 92 (174)
T d1yb5a2 26 VKAGESVLVHGASGGVGLAACQIARAYG--LKILGTAGTEEGQKIVLQNGA---------H--EVFNHREVNYIDKIKKY 92 (174)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHTTC---------S--EEEETTSTTHHHHHHHH
T ss_pred CCCCCEEEEEeccccccccccccccccC--cccccccccccccccccccCc---------c--cccccccccHHHHhhhh
Confidence 688999999996 4 3788888888864 699999988888777765321 1 12211 1111 11
Q ss_pred CCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 120 EREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 120 ~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
.....+|+|+.... ....+...+.|+|+|+++..
T Consensus 93 t~~~g~d~v~d~~g-~~~~~~~~~~l~~~G~iv~~ 126 (174)
T d1yb5a2 93 VGEKGIDIIIEMLA-NVNLSKDLSLLSHGGRVIVV 126 (174)
T ss_dssp HCTTCEEEEEESCH-HHHHHHHHHHEEEEEEEEEC
T ss_pred hccCCceEEeeccc-HHHHHHHHhccCCCCEEEEE
Confidence 22356999988766 45678889999999999874
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=97.26 E-value=0.0012 Score=45.14 Aligned_cols=97 Identities=13% Similarity=-0.008 Sum_probs=67.4
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEE-ecCCCC------C
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVV-WNGKHG------Y 119 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~d~~~~------~ 119 (204)
++++.+|+-+|+|. |..+..+++.. ....|+++|.++...+.+++.... .++. .+..+. .
T Consensus 26 vk~GdtVlV~GaGG~G~~~~~~~~~~-g~~~Vi~~~~~~~k~~~a~~~Ga~-----------~~i~~~~~~~~~~~~~~~ 93 (176)
T d2jhfa2 26 VTQGSTCAVFGLGGVGLSVIMGCKAA-GAARIIGVDINKDKFAKAKEVGAT-----------ECVNPQDYKKPIQEVLTE 93 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHHHTTCS-----------EEECGGGCSSCHHHHHHH
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHc-CCceEEeecCcHHHHHHHHHhCCe-----------eEEecCCchhHHHHHHHH
Confidence 78999999999986 45566666665 456999999999999998776432 1111 111110 0
Q ss_pred CCCCCeeEEEECCCccchhHHHHHhcCCCc-EEEEEec
Q psy10572 120 EREAPYDIIHVSPSYFTIPQKLLDQLVPGG-RMVMPVG 156 (204)
Q Consensus 120 ~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG-~l~~~~~ 156 (204)
...+.+|+++...+.....+.+...++++| .+++...
T Consensus 94 ~~~~G~D~vid~~G~~~~~~~a~~~~~~~~g~~~~~~~ 131 (176)
T d2jhfa2 94 MSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGV 131 (176)
T ss_dssp HTTSCBSEEEECSCCHHHHHHHHHHBCTTTCEEEECSC
T ss_pred HhcCCCCEEEecCCchhHHHHHHHHHhcCCcceEEecC
Confidence 123569999999999988899999998875 5444333
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=97.23 E-value=0.0006 Score=49.37 Aligned_cols=57 Identities=14% Similarity=0.181 Sum_probs=46.7
Q ss_pred hHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhh
Q psy10572 34 PHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNID 96 (204)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~ 96 (204)
..+...++... .+++..|||.-||+|..+.++.+... +.+|+|+++..++.|++++.
T Consensus 199 ~~L~~~lI~~~---s~~gd~VlDpF~GSGTT~~aa~~~~R---~~ig~El~~~y~~~a~~Rl~ 255 (256)
T d1g60a_ 199 RDLIERIIRAS---SNPNDLVLDCFMGSGTTAIVAKKLGR---NFIGCDMNAEYVNQANFVLN 255 (256)
T ss_dssp HHHHHHHHHHH---CCTTCEEEESSCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHh---CCCCCEEEECCCCchHHHHHHHHcCC---eEEEEeCCHHHHHHHHHHHc
Confidence 34455555544 48899999999999999988888654 99999999999999999864
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=97.22 E-value=0.00034 Score=47.61 Aligned_cols=92 Identities=20% Similarity=0.182 Sum_probs=65.2
Q ss_pred CCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEE
Q psy10572 50 PGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDII 128 (204)
Q Consensus 50 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 128 (204)
++.+|+-+|+|. |..++..++.++ ++|+.+|.+...++..+..+.. +++....+-......-...|+|
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~lG--A~V~~~D~~~~~l~~l~~~~~~---------~~~~~~~~~~~l~~~~~~aDiv 99 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGLG--AQVQIFDINVERLSYLETLFGS---------RVELLYSNSAEIETAVAEADLL 99 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHGG---------GSEEEECCHHHHHHHHHTCSEE
T ss_pred CCcEEEEECCChHHHHHHHHHhhCC--CEEEEEeCcHHHHHHHHHhhcc---------cceeehhhhhhHHHhhccCcEE
Confidence 456999999997 888888888874 6999999999999888776543 3444333311110111358999
Q ss_pred EECCCccc------hhHHHHHhcCCCcEEE
Q psy10572 129 HVSPSYFT------IPQKLLDQLVPGGRMV 152 (204)
Q Consensus 129 ~~~~~~~~------~~~~~~~~Lk~gG~l~ 152 (204)
|.....+. +.+++.+.+|||..++
T Consensus 100 I~aalipG~~aP~lIt~~mv~~Mk~GSVIV 129 (168)
T d1pjca1 100 IGAVLVPGRRAPILVPASLVEQMRTGSVIV 129 (168)
T ss_dssp EECCCCTTSSCCCCBCHHHHTTSCTTCEEE
T ss_pred EEeeecCCcccCeeecHHHHhhcCCCcEEE
Confidence 88765432 4489999999998775
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=97.21 E-value=0.00017 Score=49.55 Aligned_cols=93 Identities=18% Similarity=0.164 Sum_probs=62.7
Q ss_pred CCCCCEEEEEcC-CC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCe
Q psy10572 48 IKPGARILDIGS-GS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPY 125 (204)
Q Consensus 48 ~~~~~~vLdiG~-G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 125 (204)
++++++||-.|. |. |..+..+++..+ +++++++.++...+.+++.-.. .+ +...+..........+
T Consensus 25 ~~~g~~VlI~ga~G~vG~~aiqlak~~G--~~vi~~~~~~~~~~~~~~lGa~---------~~-i~~~~~~~~~~~~~g~ 92 (171)
T d1iz0a2 25 ARPGEKVLVQAAAGALGTAAVQVARAMG--LRVLAAASRPEKLALPLALGAE---------EA-ATYAEVPERAKAWGGL 92 (171)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHTT--CEEEEEESSGGGSHHHHHTTCS---------EE-EEGGGHHHHHHHTTSE
T ss_pred CCCCCEEEEEeccccchhhhhhhhcccc--cccccccccccccccccccccc---------ee-eehhhhhhhhhccccc
Confidence 789999998884 54 778888888763 6999999998888877653221 11 1111111111123569
Q ss_pred eEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 126 DIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 126 D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
|+|+-..+ ...+...++|+++|+++..
T Consensus 93 D~v~d~~G--~~~~~~~~~l~~~G~~v~~ 119 (171)
T d1iz0a2 93 DLVLEVRG--KEVEESLGLLAHGGRLVYI 119 (171)
T ss_dssp EEEEECSC--TTHHHHHTTEEEEEEEEEC
T ss_pred cccccccc--hhHHHHHHHHhcCCcEEEE
Confidence 99987544 4568888999999999874
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=97.16 E-value=0.00055 Score=51.19 Aligned_cols=59 Identities=15% Similarity=0.139 Sum_probs=49.2
Q ss_pred ChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhh
Q psy10572 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97 (204)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~ 97 (204)
+..+...++... .+++..|||.-||+|..+.++.+... +.+|+|+++..++.|++++..
T Consensus 236 P~~L~~rlI~~~---s~~gdiVlDpF~GSGTT~~AA~~lgR---~~Ig~El~~~y~~~a~~Rl~~ 294 (320)
T d1booa_ 236 PAKLPEFFIRML---TEPDDLVVDIFGGSNTTGLVAERESR---KWISFEMKPEYVAASAFRFLD 294 (320)
T ss_dssp CTHHHHHHHHHH---CCTTCEEEETTCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHGGGSC
T ss_pred chHHHHHhhhhc---ccCCCEEEecCCCCcHHHHHHHHcCC---cEEEEeCCHHHHHHHHHHHHh
Confidence 445666666655 58999999999999999998888654 999999999999999998754
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=97.00 E-value=0.0014 Score=47.97 Aligned_cols=59 Identities=17% Similarity=0.209 Sum_probs=49.0
Q ss_pred ChHHHHHHHHHHhccCCCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhh
Q psy10572 33 SPHIHAQMLELLKDKIKPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDK 97 (204)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~ 97 (204)
+..+...++... ..++..|||.-||+|..+.++.+... +.+|+|+++...+.|++++..
T Consensus 193 P~~L~~~~I~~~---s~~gdiVLDpF~GSGTT~~Aa~~lgR---~~ig~El~~~y~~~a~~Ri~~ 251 (279)
T d1eg2a_ 193 PAAVIERLVRAL---SHPGSTVLDFFAGSGVTARVAIQEGR---NSICTDAAPVFKEYYQKQLTF 251 (279)
T ss_dssp CHHHHHHHHHHH---SCTTCEEEETTCTTCHHHHHHHHHTC---EEEEEESSTHHHHHHHHHHHH
T ss_pred chhHHHHHHHhh---cCCCCEEEecCCCCcHHHHHHHHhCC---eEEEEeCCHHHHHHHHHHHHH
Confidence 344555555544 58999999999999999988888764 999999999999999999875
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=96.90 E-value=0.0048 Score=41.88 Aligned_cols=97 Identities=18% Similarity=0.142 Sum_probs=65.6
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC-------
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY------- 119 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~------- 119 (204)
++++.+|+-+|+|. |..+..+++.. ....|+++|.++..++.+++.-.. .++...-....
T Consensus 26 ~k~g~~VlI~G~Gg~g~~~~~~~~~~-g~~~Vi~~~~~~~rl~~a~~~GAd-----------~~in~~~~~~~~~~~~~~ 93 (175)
T d1cdoa2 26 VEPGSTCAVFGLGAVGLAAVMGCHSA-GAKRIIAVDLNPDKFEKAKVFGAT-----------DFVNPNDHSEPISQVLSK 93 (175)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHHHTTCC-----------EEECGGGCSSCHHHHHHH
T ss_pred CCCCCEEEEEecCCccchHHHHHHHH-hhchheeecchHHHHHHHHHcCCc-----------EEEcCCCcchhHHHHHHh
Confidence 78999999999998 44455556655 456899999999999998875322 12221101111
Q ss_pred CCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEEec
Q psy10572 120 EREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVG 156 (204)
Q Consensus 120 ~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~~ 156 (204)
.....+|+++...........+...++++|..++...
T Consensus 94 ~~~~G~d~vid~~G~~~~~~~a~~~~~~g~~~~~~~g 130 (175)
T d1cdoa2 94 MTNGGVDFSLECVGNVGVMRNALESCLKGWGVSVLVG 130 (175)
T ss_dssp HHTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECS
T ss_pred hccCCcceeeeecCCHHHHHHHHHHhhCCCcceeEEE
Confidence 1124699999999888888888888777755444343
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=96.81 E-value=0.0075 Score=41.00 Aligned_cols=94 Identities=20% Similarity=0.132 Sum_probs=65.7
Q ss_pred CCCCCEEEEEcCCC--cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEE---ecCCCC---C
Q psy10572 48 IKPGARILDIGSGS--GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVV---WNGKHG---Y 119 (204)
Q Consensus 48 ~~~~~~vLdiG~G~--G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~d~~~~---~ 119 (204)
++++++||-.|+|. |..+..+++..+ +++++++.++...+.+++.-.. .++. .|+.+. .
T Consensus 26 l~~g~~Vlv~ga~g~vG~~~iqlak~~G--a~Vi~~~~s~~k~~~~~~lGa~-----------~vi~~~~~d~~~~v~~~ 92 (179)
T d1qora2 26 IKPDEQFLFHAAAGGVGLIACQWAKALG--AKLIGTVGTAQKAQSALKAGAW-----------QVINYREEDLVERLKEI 92 (179)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHHT--CEEEEEESSHHHHHHHHHHTCS-----------EEEETTTSCHHHHHHHH
T ss_pred CCCCCEEEEEccccccchHHHHHHHHhC--CeEeecccchHHHHHHHhcCCe-----------EEEECCCCCHHHHHHHH
Confidence 68899999886665 677888888764 6999999999999888764221 1221 111110 1
Q ss_pred CCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 120 EREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 120 ~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
.....+|+|+.... ..........++++|++++..
T Consensus 93 t~g~g~d~v~d~~g-~~~~~~~~~~l~~~G~~v~~g 127 (179)
T d1qora2 93 TGGKKVRVVYDSVG-RDTWERSLDCLQRRGLMVSFG 127 (179)
T ss_dssp TTTCCEEEEEECSC-GGGHHHHHHTEEEEEEEEECC
T ss_pred hCCCCeEEEEeCcc-HHHHHHHHHHHhcCCeeeecc
Confidence 22356998877665 556789999999999987643
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=96.75 E-value=0.0012 Score=47.82 Aligned_cols=84 Identities=14% Similarity=0.156 Sum_probs=57.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhC---------------------------------------CCceEEEEEcCHHHHH
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAG---------------------------------------PEGRVYGVEHVMELAE 89 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~---------------------------------------~~~~v~~vD~~~~~~~ 89 (204)
..+..++|..||+|.+.++.+-... ....++|.|.++.+++
T Consensus 49 ~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~ 128 (249)
T d1o9ga_ 49 DGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQ 128 (249)
T ss_dssp CSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred CCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHH
Confidence 4456899999999999887765310 0124578888888888
Q ss_pred HHH---HHhhhcCccccCccceEEEEecCCCCC-----CCCCCeeEEEECCCccc
Q psy10572 90 SSI---KNIDKGNSELLDQGRVQFVVWNGKHGY-----EREAPYDIIHVSPSYFT 136 (204)
Q Consensus 90 ~a~---~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~~D~v~~~~~~~~ 136 (204)
.|+ .++...+ ....+.+...|+.+.. .+....++|++|+++-+
T Consensus 129 ~A~~~r~n~~~Ag----l~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGE 179 (249)
T d1o9ga_ 129 AARRLRERLTAEG----GALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGE 179 (249)
T ss_dssp HHHHHHHHHHHTT----SSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGG
T ss_pred HHHHHHHHHHHcC----CCceeeeeecchhccCcchhccCCCCCCEEEeCCCccc
Confidence 774 4554433 2356888889876432 12356899999999843
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.70 E-value=0.0034 Score=42.96 Aligned_cols=94 Identities=22% Similarity=0.206 Sum_probs=63.5
Q ss_pred CCCCCEEEEEcC-C-CcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEec--CCCC---CC
Q psy10572 48 IKPGARILDIGS-G-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWN--GKHG---YE 120 (204)
Q Consensus 48 ~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d--~~~~---~~ 120 (204)
++++.+||-.|. | .|.++..+++..+ ++++++..+++..+.+++.-. ..+ +...+ +.+. ..
T Consensus 23 ~~~g~~VlI~ga~g~vG~~~iqla~~~g--~~vi~~~~~~~~~~~l~~~Ga---------~~v-i~~~~~~~~~~v~~~t 90 (183)
T d1pqwa_ 23 LSPGERVLIHSATGGVGMAAVSIAKMIG--ARIYTTAGSDAKREMLSRLGV---------EYV-GDSRSVDFADEILELT 90 (183)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHHT--CEEEEEESSHHHHHHHHTTCC---------SEE-EETTCSTHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCcccccchhhcccc--ccceeeecccccccccccccc---------ccc-ccCCccCHHHHHHHHh
Confidence 688899998773 4 3788888888864 588988888877777765321 111 11111 1110 12
Q ss_pred CCCCeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 121 REAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 121 ~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
....+|+|+....- ...+.+.++|+++|+++..
T Consensus 91 ~~~g~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~ 123 (183)
T d1pqwa_ 91 DGYGVDVVLNSLAG-EAIQRGVQILAPGGRFIEL 123 (183)
T ss_dssp TTCCEEEEEECCCT-HHHHHHHHTEEEEEEEEEC
T ss_pred CCCCEEEEEecccc-hHHHHHHHHhcCCCEEEEE
Confidence 23569999987764 5678899999999999874
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=96.60 E-value=0.0023 Score=43.97 Aligned_cols=99 Identities=19% Similarity=0.216 Sum_probs=61.7
Q ss_pred CCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEE---ecCCC---CCCC-
Q psy10572 50 PGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVV---WNGKH---GYER- 121 (204)
Q Consensus 50 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~d~~~---~~~~- 121 (204)
++.+|+-+|+|. |..+...+..++ ++|+.+|.++..++..+........ .......... +.... ....
T Consensus 28 ~pa~VvViGaGvaG~~Aa~~A~~lG--A~V~v~D~~~~~~~~l~~l~~~~i~--~~~~~~~~~~~~~gyA~~~s~~~~~~ 103 (183)
T d1l7da1 28 PPARVLVFGVGVAGLQAIATAKRLG--AVVMATDVRAATKEQVESLGGKFIT--VDDEAMKTAETAGGYAKEMGEEFRKK 103 (183)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCSTTHHHHHHTTCEECC--C-----------------------CC
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHcC--CEEEEEeccHHHHHHHHHhhcceEE--EeccccccccccccchhhcCHHHHHH
Confidence 456999999997 888888888864 6999999999999988876543210 0000000000 00000 0000
Q ss_pred --------CCCeeEEEECCCccc------hhHHHHHhcCCCcEEE
Q psy10572 122 --------EAPYDIIHVSPSYFT------IPQKLLDQLVPGGRMV 152 (204)
Q Consensus 122 --------~~~~D~v~~~~~~~~------~~~~~~~~Lk~gG~l~ 152 (204)
-...|+||.....+. +.+++.+.+|||+.++
T Consensus 104 ~~~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIV 148 (183)
T d1l7da1 104 QAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVII 148 (183)
T ss_dssp HHHHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEE
T ss_pred HHHHHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEE
Confidence 135899998765533 4489999999999875
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=96.59 E-value=0.0065 Score=46.51 Aligned_cols=75 Identities=24% Similarity=0.179 Sum_probs=48.4
Q ss_pred cccc-CCcccCChHHHHHHHHHHhcc-------C--CCCCEEEEEcCCCcHHHHHHHHHhC------CCceEEEEEcCHH
Q psy10572 23 RQIG-YGADISSPHIHAQMLELLKDK-------I--KPGARILDIGSGSGYLTACLAYMAG------PEGRVYGVEHVME 86 (204)
Q Consensus 23 ~~~~-~~~~~~~~~~~~~~~~~l~~~-------~--~~~~~vLdiG~G~G~~~~~l~~~~~------~~~~v~~vD~~~~ 86 (204)
..+| .|.+++++.+...+-+.+... + .+..+|+|+|+|+|.++..+.+.+. ...+++-+|.|+.
T Consensus 42 ~~iG~~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~ 121 (365)
T d1zkda1 42 DPLGREGDFTTSPEISQMFGELLGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPV 121 (365)
T ss_dssp --------CCSHHHHCHHHHHHHHHHHHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHH
T ss_pred CCCCCCCCeECCCchHHHHHHHHHHHHHHHHHHhCCCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchh
Confidence 3444 467888888765555444311 1 2345899999999999988877652 2346899999999
Q ss_pred HHHHHHHHhhh
Q psy10572 87 LAESSIKNIDK 97 (204)
Q Consensus 87 ~~~~a~~~~~~ 97 (204)
+.+.-+..+..
T Consensus 122 L~~~Q~~~l~~ 132 (365)
T d1zkda1 122 LRQKQQTLLAG 132 (365)
T ss_dssp HHHHHHHHSTT
T ss_pred HHHHHHHHhcc
Confidence 87777766543
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=96.53 E-value=0.0074 Score=41.29 Aligned_cols=94 Identities=16% Similarity=0.112 Sum_probs=65.2
Q ss_pred CCCCCEEEEEcCCC--cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCC--C---CCC
Q psy10572 48 IKPGARILDIGSGS--GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGK--H---GYE 120 (204)
Q Consensus 48 ~~~~~~vLdiG~G~--G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~--~---~~~ 120 (204)
++++.+||-.|++. |..+..+++..+ ++++++..+++..+.++..-.. .+ +...+.. + ...
T Consensus 27 v~~G~~VlV~ga~ggvG~~aiqlak~~G--a~vi~~~~~~~~~~~~~~~Ga~---------~v-i~~~~~~~~~~~~~~~ 94 (182)
T d1v3va2 27 VKGGETVLVSAAAGAVGSVVGQIAKLKG--CKVVGAAGSDEKIAYLKQIGFD---------AA-FNYKTVNSLEEALKKA 94 (182)
T ss_dssp CCSSCEEEESSTTSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHTTCS---------EE-EETTSCSCHHHHHHHH
T ss_pred CCCCCEEEEEeCCCchhHHHHHHHHccC--CEEEEeCCCHHHHHHHHhhhhh---------hh-cccccccHHHHHHHHh
Confidence 68899999888865 667778888763 6999999998887777664321 11 1111111 0 011
Q ss_pred CCCCeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 121 REAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 121 ~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
....+|+|+-.-+ ....+...++|+++|.+++.
T Consensus 95 ~~~Gvd~v~D~vG-~~~~~~~~~~l~~~G~~v~~ 127 (182)
T d1v3va2 95 SPDGYDCYFDNVG-GEFLNTVLSQMKDFGKIAIC 127 (182)
T ss_dssp CTTCEEEEEESSC-HHHHHHHGGGEEEEEEEEEC
T ss_pred hcCCCceeEEecC-chhhhhhhhhccCCCeEEee
Confidence 2356999987766 46778999999999999874
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=96.05 E-value=0.019 Score=38.50 Aligned_cols=87 Identities=18% Similarity=0.153 Sum_probs=54.2
Q ss_pred EEEEEcCCC-cH-HHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEEE
Q psy10572 53 RILDIGSGS-GY-LTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHV 130 (204)
Q Consensus 53 ~vLdiG~G~-G~-~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 130 (204)
+|+-||||. |. ++..+.+.. ...+++++|.++..++.+++.-. +.....+... ......|+|+.
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g-~~~~I~~~D~~~~~~~~a~~~~~-----------~~~~~~~~~~--~~~~~~dlIil 68 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSG-FKGKIYGYDINPESISKAVDLGI-----------IDEGTTSIAK--VEDFSPDFVML 68 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTT-CCSEEEEECSCHHHHHHHHHTTS-----------CSEEESCGGG--GGGTCCSEEEE
T ss_pred EEEEEccCHHHHHHHHHHHhcC-CCeEEEEEECChHHHHHHHHhhc-----------chhhhhhhhh--hhccccccccc
Confidence 588899986 33 444444433 45689999999999998876421 1111111111 11235899988
Q ss_pred CCCccc---hhHHHHHhcCCCcEEEE
Q psy10572 131 SPSYFT---IPQKLLDQLVPGGRMVM 153 (204)
Q Consensus 131 ~~~~~~---~~~~~~~~Lk~gG~l~~ 153 (204)
..+... +++.+...++++..++-
T Consensus 69 a~p~~~~~~vl~~l~~~~~~~~ii~d 94 (171)
T d2g5ca2 69 SSPVRTFREIAKKLSYILSEDATVTD 94 (171)
T ss_dssp CSCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred cCCchhhhhhhhhhhccccccccccc
Confidence 877654 55677888887765543
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.87 E-value=0.01 Score=40.51 Aligned_cols=99 Identities=10% Similarity=-0.101 Sum_probs=65.0
Q ss_pred CCCCCEEEEEcCCC--cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCC--CCCCCC
Q psy10572 48 IKPGARILDIGSGS--GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKH--GYEREA 123 (204)
Q Consensus 48 ~~~~~~vLdiG~G~--G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~ 123 (204)
.+++.+||--|++. |.++..+++.. +++|+++--++.-.+.++..-... +--...+..+ .....+
T Consensus 29 ~~~g~~VLI~gaaGGVG~~aiQlak~~--Ga~Viat~~s~~k~~~~~~lGa~~---------vi~~~~~~~~~~~~~~~~ 97 (176)
T d1xa0a2 29 TPERGPVLVTGATGGVGSLAVSMLAKR--GYTVEASTGKAAEHDYLRVLGAKE---------VLAREDVMAERIRPLDKQ 97 (176)
T ss_dssp CGGGCCEEESSTTSHHHHHHHHHHHHT--TCCEEEEESCTTCHHHHHHTTCSE---------EEECC---------CCSC
T ss_pred CCCCCEEEEEeccchHHHHHHHHHHHc--CCceEEecCchHHHHHHHhcccce---------eeecchhHHHHHHHhhcc
Confidence 45678899888654 66778888875 369999998888888887653321 1101111111 112346
Q ss_pred CeeEEEECCCccchhHHHHHhcCCCcEEEEEecCC
Q psy10572 124 PYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 124 ~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
.+|+|+-+.. ...++...+.|+++|+++..-...
T Consensus 98 gvD~vid~vg-g~~~~~~l~~l~~~Griv~~G~~~ 131 (176)
T d1xa0a2 98 RWAAAVDPVG-GRTLATVLSRMRYGGAVAVSGLTG 131 (176)
T ss_dssp CEEEEEECST-TTTHHHHHHTEEEEEEEEECSCCS
T ss_pred CcCEEEEcCC-chhHHHHHHHhCCCceEEEeeccc
Confidence 7998877655 456799999999999998865543
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=95.83 E-value=0.046 Score=40.25 Aligned_cols=93 Identities=14% Similarity=0.003 Sum_probs=63.5
Q ss_pred CEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCC-CCCeeEEEE
Q psy10572 52 ARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYER-EAPYDIIHV 130 (204)
Q Consensus 52 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~v~~ 130 (204)
.+|+|+.||.|.+..-+.+.. -. .+.++|+++.+.+.-+.|.. -.++.+|+.+.... -...|+++.
T Consensus 1 mk~~~lF~G~Gg~~~gl~~aG-~~-~~~a~e~d~~a~~~~~~N~~-----------~~~~~~Di~~~~~~~~~~~dll~~ 67 (324)
T d1dcta_ 1 MNLISLFSGAGGLDLGFQKAG-FR-IICANEYDKSIWKTYESNHS-----------AKLIKGDISKISSDEFPKCDGIIG 67 (324)
T ss_dssp CEEEEESCSSCHHHHHHHHHT-CE-EEEEEECCHHHHHHHHHHCC-----------SEEEESCTTTSCGGGSCCCSEEEE
T ss_pred CeEEEeCcCcCHHHHHHHHCC-CE-EEEEEeCCHHHHHHHHHHCC-----------CCCccCChhhCCHhHcccccEEee
Confidence 379999999999988776654 21 46699999998888777642 24567786654322 246999999
Q ss_pred CCCccch-------------------hHHHHHhcCCCcEEEEEecC
Q psy10572 131 SPSYFTI-------------------PQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 131 ~~~~~~~-------------------~~~~~~~Lk~gG~l~~~~~~ 157 (204)
.+++..+ .-++...++|.-.++=.+.+
T Consensus 68 g~PCq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~~Pk~~~lENV~~ 113 (324)
T d1dcta_ 68 GPPCQSWSEGGSLRGIDDPRGKLFYEYIRILKQKKPIFFLAENVKG 113 (324)
T ss_dssp CCCCTTTSSSSCCCCSSSHHHHHHHHHHHHHHHHCCSEEEEEEEGG
T ss_pred cccccccccccccccccccccchHHHHHHHHHhhCCceeecccccc
Confidence 8877431 13456778887666555543
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.93 E-value=0.048 Score=39.59 Aligned_cols=99 Identities=12% Similarity=0.110 Sum_probs=68.8
Q ss_pred CCEEEEEcCCCcHHHHHHHHHhC--CCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC---------
Q psy10572 51 GARILDIGSGSGYLTACLAYMAG--PEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY--------- 119 (204)
Q Consensus 51 ~~~vLdiG~G~G~~~~~l~~~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------- 119 (204)
+++|.=|..|++.++..+++.+. ..++|+..+.+...++.+.+.+.... .++.++..|+.+..
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~------~~~~~~~~Dvs~~~sv~~~~~~~ 75 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG------LSPRFHQLDIDDLQSIRALRDFL 75 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT------CCCEEEECCTTCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC------CcEEEEEEecCCHHHHHHHHHHH
Confidence 56776666667677666665542 24589999999999988888876632 46788899976321
Q ss_pred -CCCCCeeEEEECCCccc-------------------------hhHHHHHhcCCCcEEEEEe
Q psy10572 120 -EREAPYDIIHVSPSYFT-------------------------IPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 120 -~~~~~~D~v~~~~~~~~-------------------------~~~~~~~~Lk~gG~l~~~~ 155 (204)
...++.|+++.|++... +.+.+...|+++|+++...
T Consensus 76 ~~~~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnis 137 (275)
T d1wmaa1 76 RKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVS 137 (275)
T ss_dssp HHHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred HHhcCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence 11267999999987621 2256678889999877643
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.92 E-value=0.019 Score=39.40 Aligned_cols=94 Identities=16% Similarity=0.195 Sum_probs=58.9
Q ss_pred CCCC--CEEEEEc-CC-CcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEec---CC---C
Q psy10572 48 IKPG--ARILDIG-SG-SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWN---GK---H 117 (204)
Q Consensus 48 ~~~~--~~vLdiG-~G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d---~~---~ 117 (204)
++++ ++||-.| +| .|..+..+++..+ ...++++..+++........... + .++... .. .
T Consensus 26 ~~~G~~etVLI~gaaGgVG~~aiQlak~~G-a~~vi~~~~~~e~~~~l~~~~ga--------d--~vi~~~~~~~~~~~~ 94 (187)
T d1vj1a2 26 ISAGSNQTMVVSGAAGACGSLAGQIGHLLG-CSRVVGICGTQEKCLFLTSELGF--------D--AAVNYKTGNVAEQLR 94 (187)
T ss_dssp CCTTSCCEEEESSTTSTTGGGHHHHHHHTT-CSEEEEEESSHHHHHHHHHHSCC--------S--EEEETTSSCHHHHHH
T ss_pred CCCCCCCEEEEECCCchhhHHHHHHHHHcC-CcceecccchHHHHhhhhhcccc--------e--EEeeccchhHHHHHH
Confidence 5555 7899877 34 5999999999874 33677777676655444333211 1 112111 11 0
Q ss_pred CCCCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 118 GYEREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 118 ~~~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
... ...+|+|+-... ....+...+.|+++|+++..
T Consensus 95 ~~~-~~GvDvv~D~vG-g~~~~~~~~~l~~~G~iv~~ 129 (187)
T d1vj1a2 95 EAC-PGGVDVYFDNVG-GDISNTVISQMNENSHIILC 129 (187)
T ss_dssp HHC-TTCEEEEEESSC-HHHHHHHHTTEEEEEEEEEC
T ss_pred HHh-ccCceEEEecCC-chhHHHHhhhccccccEEEe
Confidence 112 246999987665 35678999999999999763
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=94.88 E-value=0.082 Score=40.03 Aligned_cols=82 Identities=17% Similarity=0.056 Sum_probs=47.7
Q ss_pred CEEEEEcCCCcHHHH-------HHHH-H-------hCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccc--eEEEEec
Q psy10572 52 ARILDIGSGSGYLTA-------CLAY-M-------AGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGR--VQFVVWN 114 (204)
Q Consensus 52 ~~vLdiG~G~G~~~~-------~l~~-~-------~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~d 114 (204)
.+|.|+||.+|.-+. ...+ . ..+..+++--|+-..-....-+.+.... -..++ +.-+.+.
T Consensus 53 ~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~---~~~~~~f~~gvpGS 129 (359)
T d1m6ex_ 53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEN---DVDGVCFINGVPGS 129 (359)
T ss_dssp ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSC---SCTTCEEEEEEESC
T ss_pred eEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccc---cCCCCeEEEecCCc
Confidence 579999999997653 2211 1 1244577777855443333333332211 00112 2335566
Q ss_pred CCCCCCCCCCeeEEEECCCccc
Q psy10572 115 GKHGYEREAPYDIIHVSPSYFT 136 (204)
Q Consensus 115 ~~~~~~~~~~~D~v~~~~~~~~ 136 (204)
+....+|.++.+++++...++|
T Consensus 130 FY~rLfP~~Slh~~~Ss~alHW 151 (359)
T d1m6ex_ 130 FYGRLFPRNTLHFIHSSYSLMW 151 (359)
T ss_dssp SSSCCSCTTCBSCEEEESCTTB
T ss_pred hhhhcCCCCceEEeeehhhhhh
Confidence 6677788899999998877665
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=94.65 E-value=0.051 Score=40.29 Aligned_cols=73 Identities=19% Similarity=0.092 Sum_probs=51.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCC-CCCeeE
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYER-EAPYDI 127 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~ 127 (204)
..+.+|+|+.||.|.++.-+.+.. - -.+.++|+++.+++.-+.|.... .++|+.+.... -..+|+
T Consensus 9 ~~~lrv~~lFsG~Gg~~~gl~~aG-~-~~v~a~e~d~~a~~~~~~N~~~~------------~~~Di~~~~~~~~~~~Dl 74 (327)
T d2c7pa1 9 LTGLRFIDLFAGLGGFRLALESCG-A-ECVYSNEWDKYAQEVYEMNFGEK------------PEGDITQVNEKTIPDHDI 74 (327)
T ss_dssp TTTCEEEEETCTTTHHHHHHHHTT-C-EEEEEECCCHHHHHHHHHHHSCC------------CBSCGGGSCGGGSCCCSE
T ss_pred CCCCeEEEECccccHHHHHHHHCC-C-eEEEEEeCCHHHHHHHHHHCCCC------------CcCchhcCchhhcceeee
Confidence 456899999999999988776643 2 14677899999999888876321 13554433211 245899
Q ss_pred EEECCCcc
Q psy10572 128 IHVSPSYF 135 (204)
Q Consensus 128 v~~~~~~~ 135 (204)
++..+++.
T Consensus 75 l~ggpPCq 82 (327)
T d2c7pa1 75 LCAGFPCQ 82 (327)
T ss_dssp EEEECCCT
T ss_pred eecccccc
Confidence 99887763
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.52 E-value=0.026 Score=42.07 Aligned_cols=75 Identities=19% Similarity=0.140 Sum_probs=49.7
Q ss_pred CCEEEEEcCCCcHHHHHHHHHhCCCc-eEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCC---CCCCee
Q psy10572 51 GARILDIGSGSGYLTACLAYMAGPEG-RVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE---REAPYD 126 (204)
Q Consensus 51 ~~~vLdiG~G~G~~~~~l~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~D 126 (204)
..+|+|+.||.|.++.-+.... -.. -+.++|+++.+++..+.+.. +..++.+|+.+... +...+|
T Consensus 2 p~kv~~lF~G~Gg~~~gl~~aG-~~~~~~~a~E~~~~a~~~~~~n~~----------~~~~~~~di~~~~~~~~~~~~~D 70 (343)
T d1g55a_ 2 PLRVLELYSGVGGMHHALRESC-IPAQVVAAIDVNTVANEVYKYNFP----------HTQLLAKTIEGITLEEFDRLSFD 70 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHT-CSEEEEEEECCCHHHHHHHHHHCT----------TSCEECSCGGGCCHHHHHHHCCS
T ss_pred CCEEEEcCcCccHHHHHHHHcC-CCCeEEEEEECCHHHHHHHHHHCC----------CCCcccCchhhCCHhHcCCCCcc
Confidence 4589999999999887765543 323 36789999998888777642 34455666553321 123689
Q ss_pred EEEECCCccc
Q psy10572 127 IIHVSPSYFT 136 (204)
Q Consensus 127 ~v~~~~~~~~ 136 (204)
+++..+++..
T Consensus 71 ll~ggpPCq~ 80 (343)
T d1g55a_ 71 MILMSPPCQP 80 (343)
T ss_dssp EEEECCC---
T ss_pred EEEeeccccc
Confidence 9998887743
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=94.37 E-value=0.062 Score=36.44 Aligned_cols=91 Identities=14% Similarity=0.007 Sum_probs=58.4
Q ss_pred CCCEEEEEcCC--CcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe-cC-CCCCCCCCCe
Q psy10572 50 PGARILDIGSG--SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW-NG-KHGYEREAPY 125 (204)
Q Consensus 50 ~~~~vLdiG~G--~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-d~-~~~~~~~~~~ 125 (204)
++..||-.|.. .|..++.+++..+ ++++++.-++...+.++..-.. .++.- +. .........+
T Consensus 31 ~~~~vlV~gasGGVG~~aiQlAk~~G--a~Via~~~~~~k~~~~~~lGad-----------~vi~~~~~~~~~~l~~~~~ 97 (177)
T d1o89a2 31 QDGEIVVTGASGGVGSTAVALLHKLG--YQVVAVSGRESTHEYLKSLGAS-----------RVLPRDEFAESRPLEKQVW 97 (177)
T ss_dssp GGCEEEESSTTSHHHHHHHHHHHHTT--CCEEEEESCGGGHHHHHHHTEE-----------EEEEGGGSSSCCSSCCCCE
T ss_pred CCCcEEEEEccccchHHHHHHHHHcC--CCeEEEecchhHHHHHHhhccc-----------cccccccHHHHHHHHhhcC
Confidence 34477755533 3667778888764 6999999898888777654222 11221 11 1112234568
Q ss_pred eEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 126 DIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 126 D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
|.++ +...........+.|+++|+++..
T Consensus 98 ~~vv-D~Vgg~~~~~~l~~l~~~Griv~~ 125 (177)
T d1o89a2 98 AGAI-DTVGDKVLAKVLAQMNYGGCVAAC 125 (177)
T ss_dssp EEEE-ESSCHHHHHHHHHTEEEEEEEEEC
T ss_pred CeeE-EEcchHHHHHHHHHhccccceEee
Confidence 8875 455556789999999999999885
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.18 E-value=0.28 Score=34.98 Aligned_cols=80 Identities=14% Similarity=0.046 Sum_probs=53.3
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHh-CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC---------
Q psy10572 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY--------- 119 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------- 119 (204)
+++.+|-.|++.|.- ..+++.+ ..+++|+.++.++..++.+.+.+.... ...++.++..|+....
T Consensus 9 k~Kv~lITGas~GIG-~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~----~~~~~~~~~~Dls~~~~v~~~v~~~ 83 (257)
T d1xg5a_ 9 RDRLALVTGASGGIG-AAVARALVQQGLKVVGCARTVGNIEELAAECKSAG----YPGTLIPYRCDLSNEEDILSMFSAI 83 (257)
T ss_dssp TTCEEEEESTTSHHH-HHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT----CSSEEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHH-HHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC----CCceEEEEEccCCCHHHHHHHHHHH
Confidence 466788888776543 3343333 245699999999998888877766532 1236788889976321
Q ss_pred -CCCCCeeEEEECCCc
Q psy10572 120 -EREAPYDIIHVSPSY 134 (204)
Q Consensus 120 -~~~~~~D~v~~~~~~ 134 (204)
...+..|+++.++..
T Consensus 84 ~~~~g~iD~lVnnAg~ 99 (257)
T d1xg5a_ 84 RSQHSGVDICINNAGL 99 (257)
T ss_dssp HHHHCCCSEEEECCCC
T ss_pred HHhcCCCCEEEecccc
Confidence 112679999988765
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=94.00 E-value=0.13 Score=32.50 Aligned_cols=88 Identities=8% Similarity=-0.075 Sum_probs=59.9
Q ss_pred CCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC----CCCCCeeEEEECCCc
Q psy10572 59 SGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY----EREAPYDIIHVSPSY 134 (204)
Q Consensus 59 ~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~v~~~~~~ 134 (204)
||.|..+..+++.+ .+..++.+|.++...+.++. .++.++.+|..... ..-...+.+++....
T Consensus 6 ~G~g~~g~~l~~~L-~~~~i~vi~~d~~~~~~~~~------------~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~~ 72 (129)
T d2fy8a1 6 CGWSESTLECLREL-RGSEVFVLAEDENVRKKVLR------------SGANFVHGDPTRVSDLEKANVRGARAVIVNLES 72 (129)
T ss_dssp ESCCHHHHHHHHTS-CGGGEEEEESCTTHHHHHHH------------TTCEEEESCTTSHHHHHHTTCTTCSEEEECCSS
T ss_pred ECCCHHHHHHHHHH-cCCCCEEEEcchHHHHHHHh------------cCccccccccCCHHHHHHhhhhcCcEEEEeccc
Confidence 46678888898888 45678999999998776643 25788999976321 122457777776544
Q ss_pred cc---hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 135 FT---IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 135 ~~---~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
.. ......+.+.|...+++.+.+..
T Consensus 73 d~~n~~~~~~~r~~~~~~~iia~~~~~~ 100 (129)
T d2fy8a1 73 DSETIHCILGIRKIDESVRIIAEAERYE 100 (129)
T ss_dssp HHHHHHHHHHHHHHCSSSCEEEECSSGG
T ss_pred hhhhHHHHHHHHHHCCCceEEEEEcCHH
Confidence 33 23455567889988887665553
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=93.95 E-value=0.072 Score=35.71 Aligned_cols=96 Identities=13% Similarity=-0.016 Sum_probs=62.7
Q ss_pred CCCCEEEEEcCC--CcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCC-CC--CCCCC
Q psy10572 49 KPGARILDIGSG--SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGK-HG--YEREA 123 (204)
Q Consensus 49 ~~~~~vLdiG~G--~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~-~~--~~~~~ 123 (204)
+++..||--|++ .|..+..+++..+ ++|+++.-+++-.+.+++.-.. .+ +...+.. +. ....+
T Consensus 22 ~~~~~VLV~gaaGgVG~~avQlAk~~G--a~Viat~~s~~k~~~~~~lGad---------~v-i~~~~~~~~~~~~~~~~ 89 (167)
T d1tt7a2 22 PEKGSVLVTGATGGVGGIAVSMLNKRG--YDVVASTGNREAADYLKQLGAS---------EV-ISREDVYDGTLKALSKQ 89 (167)
T ss_dssp GGGCCEEEESTTSHHHHHHHHHHHHHT--CCEEEEESSSSTHHHHHHHTCS---------EE-EEHHHHCSSCCCSSCCC
T ss_pred CCCCEEEEeCCcchHHHHHHHHHHHcC--CceEEEecCHHHHHHHHhhccc---------ce-EeccchhchhhhcccCC
Confidence 445568866643 3778888888874 6999999888877777664322 11 1122211 11 12235
Q ss_pred CeeEEEECCCccchhHHHHHhcCCCcEEEEEecC
Q psy10572 124 PYDIIHVSPSYFTIPQKLLDQLVPGGRMVMPVGE 157 (204)
Q Consensus 124 ~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~~~ 157 (204)
.+|+|+-... ...+....+.|+++|++++.-..
T Consensus 90 gvd~vid~vg-g~~~~~~~~~l~~~G~iv~~G~~ 122 (167)
T d1tt7a2 90 QWQGAVDPVG-GKQLASLLSKIQYGGSVAVSGLT 122 (167)
T ss_dssp CEEEEEESCC-THHHHHHHTTEEEEEEEEECCCS
T ss_pred CceEEEecCc-HHHHHHHHHHhccCceEEEeecc
Confidence 7999876654 45668999999999999885433
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=93.91 E-value=0.091 Score=40.34 Aligned_cols=50 Identities=16% Similarity=0.092 Sum_probs=41.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHhCC-CceEEEEEcCHHHHHHHHHHhhhc
Q psy10572 49 KPGARILDIGSGSGYLTACLAYMAGP-EGRVYGVEHVMELAESSIKNIDKG 98 (204)
Q Consensus 49 ~~~~~vLdiG~G~G~~~~~l~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~ 98 (204)
+++..++|+|+-.|..+..++..... ..+|+++|+++...+..++++..+
T Consensus 211 ~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n 261 (395)
T d2py6a1 211 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRY 261 (395)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHT
T ss_pred CCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhc
Confidence 56779999999999999888776532 358999999999999999988754
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=93.89 E-value=0.41 Score=30.18 Aligned_cols=85 Identities=9% Similarity=-0.023 Sum_probs=52.8
Q ss_pred EEEEEcCCCcHHHHHHHHHhC-CCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC----CCCCCeeE
Q psy10572 53 RILDIGSGSGYLTACLAYMAG-PEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY----EREAPYDI 127 (204)
Q Consensus 53 ~vLdiG~G~G~~~~~l~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~ 127 (204)
+|+-+|+ |.++..+++.+. .+..|+.+|.++..++.++..+ +..++.+|..... ..-...|.
T Consensus 2 ~IvI~G~--G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~-----------~~~vi~Gd~~~~~~l~~~~i~~a~~ 68 (132)
T d1lssa_ 2 YIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI-----------DALVINGDCTKIKTLEDAGIEDADM 68 (132)
T ss_dssp EEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-----------SSEEEESCTTSHHHHHHTTTTTCSE
T ss_pred EEEEECC--CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhh-----------hhhhccCcccchhhhhhcChhhhhh
Confidence 5666776 556555655442 2358999999999888775532 4678889876421 12246888
Q ss_pred EEECCCccc---hhHHHHHhcCCCcE
Q psy10572 128 IHVSPSYFT---IPQKLLDQLVPGGR 150 (204)
Q Consensus 128 v~~~~~~~~---~~~~~~~~Lk~gG~ 150 (204)
+++...... +.....+.+.+.-.
T Consensus 69 vv~~t~~d~~N~~~~~~~k~~~~~~i 94 (132)
T d1lssa_ 69 YIAVTGKEEVNLMSSLLAKSYGINKT 94 (132)
T ss_dssp EEECCSCHHHHHHHHHHHHHTTCCCE
T ss_pred hcccCCcHHHHHHHHHHHHHcCCceE
Confidence 887655543 22444456777643
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=93.71 E-value=0.14 Score=33.85 Aligned_cols=83 Identities=19% Similarity=0.133 Sum_probs=49.9
Q ss_pred EEEEEcCCC-cH-HHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEEE
Q psy10572 53 RILDIGSGS-GY-LTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHV 130 (204)
Q Consensus 53 ~vLdiG~G~-G~-~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 130 (204)
+|.-||+|. |. ++..+.+. +.+|+++|.++..++.+++.-. +.....+ .+. -...|+|+.
T Consensus 2 kI~iIG~G~mG~~lA~~l~~~---g~~V~~~d~~~~~~~~a~~~~~-----------~~~~~~~-~~~---~~~~DiIil 63 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRRR---GHYLIGVSRQQSTCEKAVERQL-----------VDEAGQD-LSL---LQTAKIIFL 63 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHHT---TCEEEEECSCHHHHHHHHHTTS-----------CSEEESC-GGG---GTTCSEEEE
T ss_pred EEEEEeecHHHHHHHHHHHHC---CCEEEEEECCchHHHHHHHhhc-----------cceeeee-ccc---ccccccccc
Confidence 577788885 33 34444442 3489999999988887765311 1111111 111 145899988
Q ss_pred CCCccc---hhHHHHHhcCCCcEEEE
Q psy10572 131 SPSYFT---IPQKLLDQLVPGGRMVM 153 (204)
Q Consensus 131 ~~~~~~---~~~~~~~~Lk~gG~l~~ 153 (204)
..+... +++++...++++..++-
T Consensus 64 avp~~~~~~vl~~l~~~l~~~~iv~~ 89 (165)
T d2f1ka2 64 CTPIQLILPTLEKLIPHLSPTAIVTD 89 (165)
T ss_dssp CSCHHHHHHHHHHHGGGSCTTCEEEE
T ss_pred cCcHhhhhhhhhhhhhhcccccceee
Confidence 766543 55677777777776643
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=93.68 E-value=0.48 Score=33.58 Aligned_cols=78 Identities=12% Similarity=0.018 Sum_probs=53.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHhC-CCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC---------
Q psy10572 50 PGARILDIGSGSGYLTACLAYMAG-PEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY--------- 119 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------- 119 (204)
.++.+|-.|+ ++.++..+++.+. .+++|+.+|.++..++.+.+.+...+ .++..+..|+.+..
T Consensus 9 enKvalITGa-s~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g------~~~~~~~~Dvt~~~~v~~~~~~~ 81 (251)
T d2c07a1 9 ENKVALVTGA-GRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFG------YESSGYAGDVSKKEEISEVINKI 81 (251)
T ss_dssp SSCEEEEEST-TSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTT------CCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCC-CCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC------CcEEEEEccCCCHHHHHHHHHHH
Confidence 3556665555 4556666666653 34699999999999888887776532 46788888876321
Q ss_pred -CCCCCeeEEEECCCc
Q psy10572 120 -EREAPYDIIHVSPSY 134 (204)
Q Consensus 120 -~~~~~~D~v~~~~~~ 134 (204)
...++.|+++.++..
T Consensus 82 ~~~~g~iDilvnnag~ 97 (251)
T d2c07a1 82 LTEHKNVDILVNNAGI 97 (251)
T ss_dssp HHHCSCCCEEEECCCC
T ss_pred HHhcCCceeeeecccc
Confidence 123679999988765
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=93.63 E-value=0.15 Score=34.62 Aligned_cols=97 Identities=10% Similarity=0.048 Sum_probs=55.3
Q ss_pred CCCCCEEEEEcCC---CcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEe---cCCCCC--
Q psy10572 48 IKPGARILDIGSG---SGYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVW---NGKHGY-- 119 (204)
Q Consensus 48 ~~~~~~vLdiG~G---~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---d~~~~~-- 119 (204)
++++.+|+-+.+| .|..+..+++..+ ++++++-.++...+...+.++..+ .+ .++.. +..+..
T Consensus 26 ~~~g~~vli~~ga~g~vG~~aiqlAk~~G--a~vI~~v~~~~~~~~~~~~~~~lG-----ad--~vi~~~~~~~~~~~~~ 96 (189)
T d1gu7a2 26 LTPGKDWFIQNGGTSAVGKYASQIGKLLN--FNSISVIRDRPNLDEVVASLKELG-----AT--QVITEDQNNSREFGPT 96 (189)
T ss_dssp CCTTTCEEEESCTTSHHHHHHHHHHHHHT--CEEEEEECCCTTHHHHHHHHHHHT-----CS--EEEEHHHHHCGGGHHH
T ss_pred CCCCCEEEEEeCCCchHHHHHHHHHhhcC--CeEEEEEecccccchHHhhhhhcc-----cc--EEEeccccchhHHHHH
Confidence 6788888877333 3667778888864 588887544443333333333211 11 12221 111100
Q ss_pred ------CCCCCeeEEEECCCccchhHHHHHhcCCCcEEEEE
Q psy10572 120 ------EREAPYDIIHVSPSYFTIPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 120 ------~~~~~~D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~ 154 (204)
.....+|+++-... ......+.+.|+++|+++..
T Consensus 97 v~~~~~~~g~~vdvv~D~vg-~~~~~~~~~~l~~~G~~v~~ 136 (189)
T d1gu7a2 97 IKEWIKQSGGEAKLALNCVG-GKSSTGIARKLNNNGLMLTY 136 (189)
T ss_dssp HHHHHHHHTCCEEEEEESSC-HHHHHHHHHTSCTTCEEEEC
T ss_pred HHHHHhhccCCceEEEECCC-cchhhhhhhhhcCCcEEEEE
Confidence 01246898885544 44568888999999998763
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=93.33 E-value=0.076 Score=32.98 Aligned_cols=91 Identities=13% Similarity=-0.008 Sum_probs=57.8
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcC--HHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCe
Q psy10572 49 KPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHV--MELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPY 125 (204)
Q Consensus 49 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 125 (204)
-.+.+||-+|.|. |.--...... .+++++.++.. +.....+. ..++++.......... ..+
T Consensus 10 l~~k~vlVvG~G~va~~ka~~ll~--~ga~v~v~~~~~~~~~~~~~~------------~~~i~~~~~~~~~~dl--~~~ 73 (113)
T d1pjqa1 10 LRDRDCLIVGGGDVAERKARLLLE--AGARLTVNALTFIPQFTVWAN------------EGMLTLVEGPFDETLL--DSC 73 (113)
T ss_dssp CBTCEEEEECCSHHHHHHHHHHHH--TTBEEEEEESSCCHHHHHHHT------------TTSCEEEESSCCGGGG--TTC
T ss_pred eCCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEeccCChHHHHHHh------------cCCceeeccCCCHHHh--CCC
Confidence 3577999999997 3222222222 34577777643 33333221 2357777766554433 458
Q ss_pred eEEEECCCccchhHHHHHhcCCCcEEEEEe
Q psy10572 126 DIIHVSPSYFTIPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 126 D~v~~~~~~~~~~~~~~~~Lk~gG~l~~~~ 155 (204)
++|+.......+-.++....++.|+++=..
T Consensus 74 ~lv~~at~d~~~n~~i~~~a~~~~ilVNv~ 103 (113)
T d1pjqa1 74 WLAIAATDDDTVNQRVSDAAESRRIFCNVV 103 (113)
T ss_dssp SEEEECCSCHHHHHHHHHHHHHTTCEEEET
T ss_pred cEEeecCCCHHHHHHHHHHHHHcCCEEEeC
Confidence 999988888888888888888999886544
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=92.68 E-value=0.45 Score=33.92 Aligned_cols=78 Identities=13% Similarity=0.086 Sum_probs=51.9
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHh-CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC---------
Q psy10572 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY--------- 119 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------- 119 (204)
.++.+|--|.+.| ++..+++.+ ..+++|+.+|.++..++.+.+.+...+ .++..+..|+.+..
T Consensus 4 ~gK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g------~~~~~~~~Dv~~~~~v~~~~~~~ 76 (260)
T d1zema1 4 NGKVCLVTGAGGN-IGLATALRLAEEGTAIALLDMNREALEKAEASVREKG------VEARSYVCDVTSEEAVIGTVDSV 76 (260)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT------SCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC------CcEEEEEccCCCHHHHHHHHHHH
Confidence 4667776666554 444444433 244699999999999988887776532 46788888876321
Q ss_pred -CCCCCeeEEEECCCc
Q psy10572 120 -EREAPYDIIHVSPSY 134 (204)
Q Consensus 120 -~~~~~~D~v~~~~~~ 134 (204)
...+..|+++.+...
T Consensus 77 ~~~~g~iDilVnnaG~ 92 (260)
T d1zema1 77 VRDFGKIDFLFNNAGY 92 (260)
T ss_dssp HHHHSCCCEEEECCCC
T ss_pred HHHhCCCCeehhhhcc
Confidence 112679999988654
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=92.62 E-value=0.45 Score=34.05 Aligned_cols=77 Identities=13% Similarity=0.126 Sum_probs=51.2
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHh-CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC---------
Q psy10572 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY--------- 119 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------- 119 (204)
.++.+|-.|++.| ++..+++.+ ..+++|+.+|.++..++.+.+.+.. ...+.++..|+.+..
T Consensus 5 ~gKvalITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~-------~~~~~~~~~Dv~~~~~v~~~~~~~ 76 (268)
T d2bgka1 5 QDKVAIITGGAGG-IGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGS-------PDVISFVHCDVTKDEDVRNLVDTT 76 (268)
T ss_dssp TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC-------TTTEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcC-------CCceEEEEccCCCHHHHHHHHHHH
Confidence 4667887776665 444444443 2456999999999988877776643 235778888876321
Q ss_pred -CCCCCeeEEEECCCc
Q psy10572 120 -EREAPYDIIHVSPSY 134 (204)
Q Consensus 120 -~~~~~~D~v~~~~~~ 134 (204)
...++.|+++.++..
T Consensus 77 ~~~~g~iD~lVnnAG~ 92 (268)
T d2bgka1 77 IAKHGKLDIMFGNVGV 92 (268)
T ss_dssp HHHHSCCCEEEECCCC
T ss_pred HHHcCCcceecccccc
Confidence 112579999988653
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=92.45 E-value=0.52 Score=33.22 Aligned_cols=75 Identities=13% Similarity=0.067 Sum_probs=47.9
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHh-CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC---------
Q psy10572 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY--------- 119 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------- 119 (204)
+++.+|--|++. .++..+++.+ ..+++|+.+|.++..++...+.+. .+...+..|..+..
T Consensus 3 ~gK~alITGas~-GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~---------~~~~~~~~Dv~~~~~v~~~~~~~ 72 (243)
T d1q7ba_ 3 EGKIALVTGASR-GIGRAIAETLAARGAKVIGTATSENGAQAISDYLG---------ANGKGLMLNVTDPASIESVLEKI 72 (243)
T ss_dssp TTCEEEESSCSS-HHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHG---------GGEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCC-HHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhC---------CCCcEEEEEecCHHHhhhhhhhh
Confidence 355666556554 4455555443 244699999999988877766543 25667788865321
Q ss_pred -CCCCCeeEEEECCCc
Q psy10572 120 -EREAPYDIIHVSPSY 134 (204)
Q Consensus 120 -~~~~~~D~v~~~~~~ 134 (204)
...++.|+++.++..
T Consensus 73 ~~~~g~iDilVnnAg~ 88 (243)
T d1q7ba_ 73 RAEFGEVDILVNNAGI 88 (243)
T ss_dssp HHHTCSCSEEEECCCC
T ss_pred hcccCCcceehhhhhh
Confidence 112679999988755
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=92.19 E-value=1.2 Score=31.47 Aligned_cols=78 Identities=12% Similarity=0.102 Sum_probs=51.7
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHh-CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC---------
Q psy10572 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY--------- 119 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------- 119 (204)
.++.+|--|++.| ++..+++.+ ..+++|+.+|.++..++.+.+.+...+ .++.++..|..+..
T Consensus 7 ~GK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g------~~~~~~~~Dv~~~~~v~~~~~~~ 79 (259)
T d2ae2a_ 7 EGCTALVTGGSRG-IGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKG------FKVEASVCDLSSRSERQELMNTV 79 (259)
T ss_dssp TTCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT------CEEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC------CCceEEEeeCCCHHHHHHHHHHH
Confidence 4667776666654 444444443 234699999999999888877776532 46778888875311
Q ss_pred -CC-CCCeeEEEECCCc
Q psy10572 120 -ER-EAPYDIIHVSPSY 134 (204)
Q Consensus 120 -~~-~~~~D~v~~~~~~ 134 (204)
.. ..+.|+++.++..
T Consensus 80 ~~~~~~~idilvnnAG~ 96 (259)
T d2ae2a_ 80 ANHFHGKLNILVNNAGI 96 (259)
T ss_dssp HHHTTTCCCEEEECCCC
T ss_pred HHHhCCCceEEEECCce
Confidence 11 2369999998765
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=92.18 E-value=0.61 Score=33.02 Aligned_cols=79 Identities=14% Similarity=0.038 Sum_probs=50.3
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHh-CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC---------
Q psy10572 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY--------- 119 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------- 119 (204)
.++.+|--|++.| ++..+++.+ ..+++|+.+|.++..++.+.+.+.... ..++..+..|+.+..
T Consensus 4 ~gK~~lITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~-----g~~~~~~~~Dv~~~~~v~~~~~~~ 77 (251)
T d1vl8a_ 4 RGRVALVTGGSRG-LGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKY-----GVETMAFRCDVSNYEEVKKLLEAV 77 (251)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-----CCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHh-----CCcEEEEEccCCCHHHHHHHHHHH
Confidence 4667777776655 444444433 244699999999988777665553311 246777888876321
Q ss_pred -CCCCCeeEEEECCCc
Q psy10572 120 -EREAPYDIIHVSPSY 134 (204)
Q Consensus 120 -~~~~~~D~v~~~~~~ 134 (204)
...++.|+++.+++.
T Consensus 78 ~~~~g~iDiLVnnAG~ 93 (251)
T d1vl8a_ 78 KEKFGKLDTVVNAAGI 93 (251)
T ss_dssp HHHHSCCCEEEECCCC
T ss_pred HHHcCCCCEEEECCCC
Confidence 112579999998765
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=91.25 E-value=0.63 Score=32.69 Aligned_cols=95 Identities=17% Similarity=0.170 Sum_probs=59.3
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHh-CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC---------
Q psy10572 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY--------- 119 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------- 119 (204)
.++.+|-.|++.|. +..+++.+ ..+++|+..+.+...++...+.+ ..++.+++.|+....
T Consensus 4 ~gK~alItGas~GI-G~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~---------~~~~~~~~~Dls~~~~i~~~~~~i 73 (241)
T d2a4ka1 4 SGKTILVTGAASGI-GRAALDLFAREGASLVAVDREERLLAEAVAAL---------EAEAIAVVADVSDPKAVEAVFAEA 73 (241)
T ss_dssp TTCEEEEESTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHTC---------CSSEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc---------CCceEEEEecCCCHHHHHHHHHHH
Confidence 46778877777654 33343333 34579999999998766554432 246778888876321
Q ss_pred -CCCCCeeEEEECCCccc-------------------------hhHHHHHhcCCCcEEEEE
Q psy10572 120 -EREAPYDIIHVSPSYFT-------------------------IPQKLLDQLVPGGRMVMP 154 (204)
Q Consensus 120 -~~~~~~D~v~~~~~~~~-------------------------~~~~~~~~Lk~gG~l~~~ 154 (204)
...++.|+++.++.... +.+.+...++.++.+++.
T Consensus 74 ~~~~g~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ 134 (241)
T d2a4ka1 74 LEEFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLT 134 (241)
T ss_dssp HHHHSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred HHHhCCccEeccccccccccchhhhhccccccccccccccccccccccccccccccceeec
Confidence 11257999998865422 124556777777776553
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=91.20 E-value=0.051 Score=39.14 Aligned_cols=52 Identities=17% Similarity=0.167 Sum_probs=37.8
Q ss_pred ceEEEEecCCCC--CCCCCCeeEEEECCCccc-----------------hhHHHHHhcCCCcEEEEEecCC
Q psy10572 107 RVQFVVWNGKHG--YEREAPYDIIHVSPSYFT-----------------IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 107 ~~~~~~~d~~~~--~~~~~~~D~v~~~~~~~~-----------------~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
+-.++.+|..+. ..+++++|+|+.++++.- .+.++.++|+|+|.+++.+...
T Consensus 4 ~~~~~~~D~le~l~~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~~~ 74 (279)
T d1eg2a_ 4 RHVYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQ 74 (279)
T ss_dssp EEEEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSC
T ss_pred cceEEechHHHHHhhCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEecCcc
Confidence 345677776642 245689999999998731 3368889999999999866543
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=90.39 E-value=0.52 Score=29.62 Aligned_cols=92 Identities=13% Similarity=0.031 Sum_probs=53.0
Q ss_pred EEEEEcCCCcHHHHHHHHHhC-CCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCC----CCCCeeE
Q psy10572 53 RILDIGSGSGYLTACLAYMAG-PEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYE----REAPYDI 127 (204)
Q Consensus 53 ~vLdiG~G~G~~~~~l~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~D~ 127 (204)
+++-+|+| .++..+++.+. .+..++.+|.++..++.++.. ...++.+|...... .-...|.
T Consensus 2 ~~iIiG~G--~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~------------~~~~~~gd~~~~~~l~~a~i~~a~~ 67 (134)
T d2hmva1 2 QFAVIGLG--RFGGSIVKELHRMGHEVLAVDINEEKVNAYASY------------ATHAVIANATEENELLSLGIRNFEY 67 (134)
T ss_dssp CEEEECCS--HHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTT------------CSEEEECCTTCTTHHHHHTGGGCSE
T ss_pred EEEEECCC--HHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHh------------CCcceeeecccchhhhccCCccccE
Confidence 34555554 55555555441 235899999999988877432 34566788654321 1135787
Q ss_pred EEECCCccc---hhHHHHHhcCCCcEEEEEecCC
Q psy10572 128 IHVSPSYFT---IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 128 v~~~~~~~~---~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
+++..+-.. ..-...+.+.+...++....+.
T Consensus 68 vi~~~~~~~~~~~~~~~~~~~~~~~~iiar~~~~ 101 (134)
T d2hmva1 68 VIVAIGANIQASTLTTLLLKELDIPNIWVKAQNY 101 (134)
T ss_dssp EEECCCSCHHHHHHHHHHHHHTTCSEEEEECCSH
T ss_pred EEEEcCchHHhHHHHHHHHHHcCCCcEEeecccH
Confidence 776655432 2233444455666776654443
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=90.23 E-value=0.49 Score=31.66 Aligned_cols=98 Identities=12% Similarity=0.070 Sum_probs=56.4
Q ss_pred CEEEEEcCCC-cHHHHHHHHHhCCCceEEEE-EcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEE
Q psy10572 52 ARILDIGSGS-GYLTACLAYMAGPEGRVYGV-EHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIH 129 (204)
Q Consensus 52 ~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~v-D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 129 (204)
.+|.-||||. |..-....+.. +..+++++ |.++...+...+.... .....+ ..|..+. ......|+|+
T Consensus 2 iki~iIG~G~~g~~~~~~l~~~-~~~~i~ai~d~~~~~~~~~~~~~~~-------~~~~~~-~~~~~~l-l~~~~iD~v~ 71 (184)
T d1ydwa1 2 IRIGVMGCADIARKVSRAIHLA-PNATISGVASRSLEKAKAFATANNY-------PESTKI-HGSYESL-LEDPEIDALY 71 (184)
T ss_dssp EEEEEESCCTTHHHHHHHHHHC-TTEEEEEEECSSHHHHHHHHHHTTC-------CTTCEE-ESSHHHH-HHCTTCCEEE
T ss_pred eEEEEEcCCHHHHHHHHHHHhC-CCCEEEEEEeCCccccccchhcccc-------ccceee-cCcHHHh-hhccccceee
Confidence 3677899996 55434444444 56788876 8888765554433221 112222 2332222 2234689998
Q ss_pred ECCCccchhHHHHHhcCCCcEEEEEecCCC
Q psy10572 130 VSPSYFTIPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 130 ~~~~~~~~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
+..+...-.+.+..+|+.|=-+++.-|-..
T Consensus 72 I~tp~~~h~~~~~~~l~~g~~v~~EKP~~~ 101 (184)
T d1ydwa1 72 VPLPTSLHVEWAIKAAEKGKHILLEKPVAM 101 (184)
T ss_dssp ECCCGGGHHHHHHHHHTTTCEEEECSSCSS
T ss_pred ecccchhhcchhhhhhhccceeeccccccc
Confidence 887776666667777776666655444433
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.23 E-value=1.4 Score=31.04 Aligned_cols=80 Identities=14% Similarity=0.124 Sum_probs=52.5
Q ss_pred CCEEEEEcCCCcHHHHHHHHHh-CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC----------
Q psy10572 51 GARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY---------- 119 (204)
Q Consensus 51 ~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~---------- 119 (204)
++.+|--|++.| ++..+++.+ ..+++|+.+|.++..++.+...+.... ...++.++..|+.+..
T Consensus 3 GKvalITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~----~~~~~~~~~~Dv~~~~~v~~~~~~~~ 77 (254)
T d2gdza1 3 GKVALVTGAAQG-IGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQF----EPQKTLFIQCDVADQQQLRDTFRKVV 77 (254)
T ss_dssp TCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTS----CGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhc----CCCcEEEEEeecCCHHHHHHHHHHHH
Confidence 566776666554 455555543 245699999999998887776664421 2347888889976421
Q ss_pred CCCCCeeEEEECCCcc
Q psy10572 120 EREAPYDIIHVSPSYF 135 (204)
Q Consensus 120 ~~~~~~D~v~~~~~~~ 135 (204)
...++.|+++.++...
T Consensus 78 ~~~G~iDilVnnAg~~ 93 (254)
T d2gdza1 78 DHFGRLDILVNNAGVN 93 (254)
T ss_dssp HHHSCCCEEEECCCCC
T ss_pred HHcCCcCeeccccccc
Confidence 1125799999987763
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=89.99 E-value=1.2 Score=31.35 Aligned_cols=77 Identities=12% Similarity=0.128 Sum_probs=50.6
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHh-CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC---------
Q psy10572 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY--------- 119 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------- 119 (204)
.++.+|--|+ ++.++..+++.+ ..+++|+.++.+++.++.+.+.+.. ..++.++..|..+..
T Consensus 5 ~gK~alVTGa-s~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~Dv~~~~~v~~~~~~~ 76 (251)
T d1zk4a1 5 DGKVAIITGG-TLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGT-------PDQIQFFQHDSSDEDGWTKLFDAT 76 (251)
T ss_dssp TTCEEEETTT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC-------TTTEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCC-------CCcEEEEEccCCCHHHHHHHHHHH
Confidence 3556665554 445555555443 2456999999999888877766543 247888899976321
Q ss_pred -CCCCCeeEEEECCCc
Q psy10572 120 -EREAPYDIIHVSPSY 134 (204)
Q Consensus 120 -~~~~~~D~v~~~~~~ 134 (204)
...++.|+++.++..
T Consensus 77 ~~~~G~iDiLVnnAg~ 92 (251)
T d1zk4a1 77 EKAFGPVSTLVNNAGI 92 (251)
T ss_dssp HHHHSSCCEEEECCCC
T ss_pred HHHhCCceEEEecccc
Confidence 112679999988765
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.82 E-value=0.88 Score=32.03 Aligned_cols=79 Identities=14% Similarity=0.074 Sum_probs=52.8
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHh-CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC---------
Q psy10572 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY--------- 119 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------- 119 (204)
.|+.+|--|++.|. +..+++.+ ..+++|+.+|.++..++...+.+... ..++..+..|..+..
T Consensus 6 ~Gkv~lITGas~GI-G~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~------~~~~~~~~~Dvs~~~~v~~~~~~i 78 (244)
T d1yb1a_ 6 TGEIVLITGAGHGI-GRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGL------GAKVHTFVVDCSNREDIYSSAKKV 78 (244)
T ss_dssp TTCEEEEETTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT------TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc------CCcEEEEEeeCCCHHHHHHHHHHH
Confidence 45667766666654 34443333 23469999999999988888777653 247888889976421
Q ss_pred -CCCCCeeEEEECCCcc
Q psy10572 120 -EREAPYDIIHVSPSYF 135 (204)
Q Consensus 120 -~~~~~~D~v~~~~~~~ 135 (204)
...+..|+++.|....
T Consensus 79 ~~~~g~idilinnag~~ 95 (244)
T d1yb1a_ 79 KAEIGDVSILVNNAGVV 95 (244)
T ss_dssp HHHTCCCSEEEECCCCC
T ss_pred HHHcCCCceeEeecccc
Confidence 1236799999987763
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=89.67 E-value=0.74 Score=29.67 Aligned_cols=99 Identities=7% Similarity=-0.023 Sum_probs=58.8
Q ss_pred CCEEEEEcCCCcHHHHHHHHHhC-CCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC----CCCCCe
Q psy10572 51 GARILDIGSGSGYLTACLAYMAG-PEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY----EREAPY 125 (204)
Q Consensus 51 ~~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~ 125 (204)
..+|+-+|+| ..+..+++.+. .+..++.+|.++........... ..++.++.+|..+.. ..-...
T Consensus 3 knHiII~G~g--~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~--------~~~~~vi~Gd~~d~~~L~~a~i~~a 72 (153)
T d1id1a_ 3 KDHFIVCGHS--ILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRL--------GDNADVIPGDSNDSSVLKKAGIDRC 72 (153)
T ss_dssp CSCEEEECCS--HHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHH--------CTTCEEEESCTTSHHHHHHHTTTTC
T ss_pred CCEEEEECCC--HHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhh--------cCCcEEEEccCcchHHHHHhccccC
Confidence 3467777775 45444544431 23489999998865443333322 246889999976432 112468
Q ss_pred eEEEECCCccc---hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 126 DIIHVSPSYFT---IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 126 D~v~~~~~~~~---~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
|.+++...... ......+.+.|+-.+++.+....
T Consensus 73 ~~vi~~~~~d~~n~~~~~~~r~~~~~~~iia~~~~~~ 109 (153)
T d1id1a_ 73 RAILALSDNDADNAFVVLSAKDMSSDVKTVLAVSDSK 109 (153)
T ss_dssp SEEEECSSCHHHHHHHHHHHHHHTSSSCEEEECSSGG
T ss_pred CEEEEccccHHHHHHHHHHHHHhCCCCceEEEEcCHH
Confidence 88887665543 22344566788888887665553
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=89.53 E-value=0.091 Score=38.44 Aligned_cols=52 Identities=15% Similarity=0.239 Sum_probs=40.0
Q ss_pred ceEEEEecCCCC--CCCCCCeeEEEECCCccc--------------------hhHHHHHhcCCCcEEEEEecCC
Q psy10572 107 RVQFVVWNGKHG--YEREAPYDIIHVSPSYFT--------------------IPQKLLDQLVPGGRMVMPVGEP 158 (204)
Q Consensus 107 ~~~~~~~d~~~~--~~~~~~~D~v~~~~~~~~--------------------~~~~~~~~Lk~gG~l~~~~~~~ 158 (204)
+-.++++|..+. ..+++++|+|+.++++.. .+..+.++|+++|.+++.+...
T Consensus 12 ~~~l~~GD~le~l~~l~~~sVdli~tDPPY~~~~~~~~~~~~~~~y~~~~~~~l~~~~rvLk~~G~i~i~~~~~ 85 (320)
T d1booa_ 12 NGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGA 85 (320)
T ss_dssp SEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred CCEEEehhHHHHHhhCccCCCCEEEECCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCcccCcccccccch
Confidence 458889997632 245689999999998721 3478889999999999977654
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=89.20 E-value=1.7 Score=30.81 Aligned_cols=99 Identities=20% Similarity=0.179 Sum_probs=60.4
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHh-CCCceEEEEEcC-HHHHHHHHHHhhhcCccccCccceEEEEecCCCCC--------
Q psy10572 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHV-MELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-------- 119 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~vD~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-------- 119 (204)
.++.+|--|++.| ++..+++.+ ..+++|+..+.+ +..++.....+...+ .++.++..|..+..
T Consensus 17 ~gK~~lITGas~G-IG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g------~~~~~~~~D~~~~~~v~~~~~~ 89 (272)
T d1g0oa_ 17 EGKVALVTGAGRG-IGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNG------SDAACVKANVGVVEDIVRMFEE 89 (272)
T ss_dssp TTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT------CCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhC------CceeeEeCCCCCHHHHHHHHHH
Confidence 4567776666554 455454443 234689988876 455666555555432 46788888866321
Q ss_pred --CCCCCeeEEEECCCccc-------------------------hhHHHHHhcCCCcEEEEEe
Q psy10572 120 --EREAPYDIIHVSPSYFT-------------------------IPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 120 --~~~~~~D~v~~~~~~~~-------------------------~~~~~~~~Lk~gG~l~~~~ 155 (204)
...+..|+++.+..... +.+.+...|+.+|.+++..
T Consensus 90 ~~~~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~ 152 (272)
T d1g0oa_ 90 AVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMG 152 (272)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred HHHHhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccccccc
Confidence 11257899988865521 2256667888888776643
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=88.61 E-value=0.67 Score=33.16 Aligned_cols=81 Identities=15% Similarity=0.067 Sum_probs=52.7
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHh-CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC---------
Q psy10572 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY--------- 119 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------- 119 (204)
.++.+|-.|++. .++..+++.+ ..+++|+.+|.++..++.+.+.+...+ ....++..+..|+.+..
T Consensus 4 ~gK~alVTGas~-GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~---~~~~~~~~~~~Dvs~~~~v~~~~~~~ 79 (272)
T d1xkqa_ 4 SNKTVIITGSSN-GIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSG---VSEKQVNSVVADVTTEDGQDQIINST 79 (272)
T ss_dssp TTCEEEETTCSS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT---CCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCEEEEeCcCc-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC---CCCCceEEEEccCCCHHHHHHHHHHH
Confidence 356677666554 4444454443 234699999999999988888776532 12346888999976321
Q ss_pred -CCCCCeeEEEECCCc
Q psy10572 120 -EREAPYDIIHVSPSY 134 (204)
Q Consensus 120 -~~~~~~D~v~~~~~~ 134 (204)
...+..|+++.|+..
T Consensus 80 ~~~~g~iDilvnnAG~ 95 (272)
T d1xkqa_ 80 LKQFGKIDVLVNNAGA 95 (272)
T ss_dssp HHHHSCCCEEEECCCC
T ss_pred HHHhCCceEEEeCCcc
Confidence 112579999988544
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=88.58 E-value=0.83 Score=32.35 Aligned_cols=78 Identities=12% Similarity=0.040 Sum_probs=52.6
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHh-CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC---------
Q psy10572 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY--------- 119 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------- 119 (204)
.++.+|--| |++.++..+++.+ ..+++|+.++.++..++.+.+.+...+ .++.++..|+.+..
T Consensus 10 ~gK~alITG-as~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g------~~~~~~~~Dvs~~~~~~~~~~~~ 82 (255)
T d1fmca_ 10 DGKCAIITG-AGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLG------GQAFACRCDITSEQELSALADFA 82 (255)
T ss_dssp TTCEEEETT-TTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTT------CCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC------CcEEEEEccCCCHHHHHHHHHHH
Confidence 466667444 5555555555554 345799999999998888877776532 46788889976421
Q ss_pred -CCCCCeeEEEECCCc
Q psy10572 120 -EREAPYDIIHVSPSY 134 (204)
Q Consensus 120 -~~~~~~D~v~~~~~~ 134 (204)
...++.|+++.+++.
T Consensus 83 ~~~~g~iDilvnnAG~ 98 (255)
T d1fmca_ 83 ISKLGKVDILVNNAGG 98 (255)
T ss_dssp HHHHSSCCEEEECCCC
T ss_pred HHHcCCCCEeeeCCcC
Confidence 112579999988765
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=88.44 E-value=0.82 Score=32.35 Aligned_cols=99 Identities=15% Similarity=0.128 Sum_probs=62.7
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHhC-CCceEEEE-EcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC--------
Q psy10572 50 PGARILDIGSGSGYLTACLAYMAG-PEGRVYGV-EHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-------- 119 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~v-D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-------- 119 (204)
.++.+|-.| |++.++..+++.+. .+++|+.. ..+...++.+.+.+...+ .++..+..|.....
T Consensus 5 ~GK~alITG-as~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g------~~~~~~~~D~~~~~~v~~~~~~ 77 (259)
T d1ja9a_ 5 AGKVALTTG-AGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLG------AQGVAIQADISKPSEVVALFDK 77 (259)
T ss_dssp TTCEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT------CCEEEEECCTTSHHHHHHHHHH
T ss_pred CCCEEEEeC-CCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcC------CCceEecCCCCCHHHHHHHHHH
Confidence 466777555 55666665655542 34577764 567777777777776533 46888899976321
Q ss_pred --CCCCCeeEEEECCCccc-------------------------hhHHHHHhcCCCcEEEEEe
Q psy10572 120 --EREAPYDIIHVSPSYFT-------------------------IPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 120 --~~~~~~D~v~~~~~~~~-------------------------~~~~~~~~Lk~gG~l~~~~ 155 (204)
...+..|+++.+..... +.+.+...++.+|.+++..
T Consensus 78 ~~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~ 140 (259)
T d1ja9a_ 78 AVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTS 140 (259)
T ss_dssp HHHHHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred HHHHcCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCcccccc
Confidence 11257999998876532 2256667778887776644
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=88.31 E-value=1.4 Score=31.02 Aligned_cols=75 Identities=12% Similarity=0.091 Sum_probs=47.7
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHh-CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC---------
Q psy10572 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY--------- 119 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------- 119 (204)
.++.+|--|++ +.++..+++.+ ..+++|+..|.++..++...+.+. .+..++..|..+..
T Consensus 5 ~gK~alITGas-~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~---------~~~~~~~~Dv~~~~~~~~~~~~~ 74 (253)
T d1hxha_ 5 QGKVALVTGGA-SGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELG---------ERSMFVRHDVSSEADWTLVMAAV 74 (253)
T ss_dssp TTCEEEETTTT-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHC---------TTEEEECCCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC---------CCeEEEEeecCCHHHHHHHHHHH
Confidence 45667755654 44555555543 244699999999988777665442 35667778865321
Q ss_pred -CCCCCeeEEEECCCc
Q psy10572 120 -EREAPYDIIHVSPSY 134 (204)
Q Consensus 120 -~~~~~~D~v~~~~~~ 134 (204)
...+..|+++.++..
T Consensus 75 ~~~~g~iDilVnnAG~ 90 (253)
T d1hxha_ 75 QRRLGTLNVLVNNAGI 90 (253)
T ss_dssp HHHHCSCCEEEECCCC
T ss_pred HHHhCCCCeEEecccc
Confidence 112679999998765
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=88.05 E-value=2.1 Score=27.33 Aligned_cols=90 Identities=14% Similarity=0.135 Sum_probs=54.5
Q ss_pred EEEEEcCCC-cH-HHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEEE
Q psy10572 53 RILDIGSGS-GY-LTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIHV 130 (204)
Q Consensus 53 ~vLdiG~G~-G~-~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 130 (204)
+|.=||||+ |. +..-+.+.. ..+++..|.+++..+...+.. .+.... + .+. -...|+|+.
T Consensus 2 kI~fIG~G~MG~ai~~~l~~~~--~~~i~v~~r~~~~~~~l~~~~-----------~~~~~~-~-~~~---v~~~Div~l 63 (152)
T d1yqga2 2 NVYFLGGGNMAAAVAGGLVKQG--GYRIYIANRGAEKRERLEKEL-----------GVETSA-T-LPE---LHSDDVLIL 63 (152)
T ss_dssp EEEEECCSHHHHHHHHHHHHHC--SCEEEEECSSHHHHHHHHHHT-----------CCEEES-S-CCC---CCTTSEEEE
T ss_pred EEEEEcCcHHHHHHHHHHHHCC--CCcEEEEeCChhHHHHhhhhc-----------cccccc-c-ccc---ccccceEEE
Confidence 567788886 43 333344442 248999999998877765542 222221 1 111 134788886
Q ss_pred CCCccchhHHHHHhcCCCcEEEEEecCCCCc
Q psy10572 131 SPSYFTIPQKLLDQLVPGGRMVMPVGEPFKG 161 (204)
Q Consensus 131 ~~~~~~~~~~~~~~Lk~gG~l~~~~~~~~~~ 161 (204)
.-. +.....+.+.+++.+.+++++..+...
T Consensus 64 avk-P~~~~~v~~~l~~~~~~viS~~ag~~~ 93 (152)
T d1yqga2 64 AVK-PQDMEAACKNIRTNGALVLSVAAGLSV 93 (152)
T ss_dssp CSC-HHHHHHHHTTCCCTTCEEEECCTTCCH
T ss_pred ecC-HHHHHHhHHHHhhcccEEeecccCCCH
Confidence 654 344556666777888888888766543
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.60 E-value=2 Score=30.03 Aligned_cols=74 Identities=18% Similarity=0.205 Sum_probs=47.9
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHh-CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC------CCC
Q psy10572 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY------ERE 122 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~~ 122 (204)
.++++|-.|++.| ++..+++.+ ..+++|+.+|.++..++...+.. .++..+..|..+.. ..-
T Consensus 6 ~GK~~lITGas~G-IG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~----------~~~~~~~~Dv~d~~~v~~~~~~~ 74 (244)
T d1pr9a_ 6 AGRRVLVTGAGKG-IGRGTVQALHATGARVVAVSRTQADLDSLVREC----------PGIEPVCVDLGDWEATERALGSV 74 (244)
T ss_dssp TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS----------TTCEEEECCTTCHHHHHHHHTTC
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhc----------CCCeEEEEeCCCHHHHHHHHHHh
Confidence 5778887776655 444444433 24469999999988777665432 34667777865321 123
Q ss_pred CCeeEEEECCCc
Q psy10572 123 APYDIIHVSPSY 134 (204)
Q Consensus 123 ~~~D~v~~~~~~ 134 (204)
++.|+++.++..
T Consensus 75 g~iDilVnnAg~ 86 (244)
T d1pr9a_ 75 GPVDLLVNNAAV 86 (244)
T ss_dssp CCCCEEEECCCC
T ss_pred CCceEEEecccc
Confidence 679999988765
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=87.45 E-value=0.097 Score=37.05 Aligned_cols=47 Identities=17% Similarity=0.152 Sum_probs=34.2
Q ss_pred EEEEecCCCC--CCCCCCeeEEEECCCccc--------------------hhHHHHHhcCCCcEEEEEe
Q psy10572 109 QFVVWNGKHG--YEREAPYDIIHVSPSYFT--------------------IPQKLLDQLVPGGRMVMPV 155 (204)
Q Consensus 109 ~~~~~d~~~~--~~~~~~~D~v~~~~~~~~--------------------~~~~~~~~Lk~gG~l~~~~ 155 (204)
++.++|..+. ..+++++|+|+.++++.. .++++.++|+|+|.+++..
T Consensus 6 ~i~~gDcle~l~~lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~ 74 (256)
T d1g60a_ 6 KIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFN 74 (256)
T ss_dssp SEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEeccHHHHHhhCcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCccccccc
Confidence 3677776542 245678999999988621 3468889999999988643
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=87.14 E-value=1.5 Score=30.72 Aligned_cols=72 Identities=14% Similarity=0.033 Sum_probs=44.6
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHh-CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC---------
Q psy10572 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY--------- 119 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------- 119 (204)
.++.+|--|++.| ++..+++.+ ..+++|+..|.++...+.++.. +..++..|..+..
T Consensus 4 ~GK~alITGas~G-IG~aia~~la~~G~~V~~~~~~~~~~~~~~~~------------~~~~~~~Dv~~~~~v~~~~~~~ 70 (248)
T d2d1ya1 4 AGKGVLVTGGARG-IGRAIAQAFAREGALVALCDLRPEGKEVAEAI------------GGAFFQVDLEDERERVRFVEEA 70 (248)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESSTTHHHHHHHH------------TCEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHc------------CCeEEEEeCCCHHHHHHHHHHH
Confidence 4667786775554 444454443 2456999999998876654331 3456677865321
Q ss_pred -CCCCCeeEEEECCCc
Q psy10572 120 -EREAPYDIIHVSPSY 134 (204)
Q Consensus 120 -~~~~~~D~v~~~~~~ 134 (204)
...++.|+++.|+..
T Consensus 71 ~~~~G~iDiLVnnAG~ 86 (248)
T d2d1ya1 71 AYALGRVDVLVNNAAI 86 (248)
T ss_dssp HHHHSCCCEEEECCCC
T ss_pred HHhcCCCCeEEEeCcC
Confidence 112679999988765
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=87.06 E-value=1.5 Score=30.82 Aligned_cols=74 Identities=15% Similarity=0.077 Sum_probs=49.0
Q ss_pred EEEEcCCCcHHHHHHHHHh-CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC----------CCC
Q psy10572 54 ILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY----------ERE 122 (204)
Q Consensus 54 vLdiG~G~G~~~~~l~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~----------~~~ 122 (204)
+|--|++ +.++..+++.+ ..+++|+.+|.++..++...+.+...+ .++..+..|..+.. ..-
T Consensus 4 alITGas-~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g------~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 76 (255)
T d1gega_ 4 ALVTGAG-QGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAG------GHAVAVKVDVSDRDQVFAAVEQARKTL 76 (255)
T ss_dssp EEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT------CCEEEEECCTTSHHHHHHHHHHHHHHT
T ss_pred EEEcCCc-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC------CcEEEEEeeCCCHHHHHHHHHHHHHHh
Confidence 3545555 44555555443 245699999999999888877776532 46788888976321 112
Q ss_pred CCeeEEEECCCc
Q psy10572 123 APYDIIHVSPSY 134 (204)
Q Consensus 123 ~~~D~v~~~~~~ 134 (204)
++.|+++.|++.
T Consensus 77 g~iDilVnnAG~ 88 (255)
T d1gega_ 77 GGFDVIVNNAGV 88 (255)
T ss_dssp TCCCEEEECCCC
T ss_pred CCccEEEecccc
Confidence 679999988765
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=86.75 E-value=1.2 Score=31.43 Aligned_cols=80 Identities=19% Similarity=0.082 Sum_probs=50.9
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHh-CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC---------
Q psy10572 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY--------- 119 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------- 119 (204)
.++.+|--|++.|. +..+++.+ ..+++|+.+|.++..++.+...+.... ...++..+..|+.+..
T Consensus 3 ~gK~alITGas~GI-G~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~----~~~~~~~~~~Dvt~~~~v~~~~~~~ 77 (258)
T d1iy8a_ 3 TDRVVLITGGGSGL-GRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETA----PDAEVLTTVADVSDEAQVEAYVTAT 77 (258)
T ss_dssp TTCEEEEETTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHC----TTCCEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhC----CCCeEEEEeccCCCHHHHHHHHHHH
Confidence 35677766766554 33333333 245699999999998888776665422 1246778888876321
Q ss_pred -CCCCCeeEEEECCCc
Q psy10572 120 -EREAPYDIIHVSPSY 134 (204)
Q Consensus 120 -~~~~~~D~v~~~~~~ 134 (204)
...++.|+++.|++.
T Consensus 78 ~~~~G~iDiLVnnAG~ 93 (258)
T d1iy8a_ 78 TERFGRIDGFFNNAGI 93 (258)
T ss_dssp HHHHSCCSEEEECCCC
T ss_pred HHHhCCCCEEEECCcc
Confidence 112679999998764
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=86.58 E-value=2.9 Score=27.23 Aligned_cols=95 Identities=12% Similarity=0.042 Sum_probs=52.9
Q ss_pred CEEEEEcCCC-cHH-HHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCC-CCCCC--CCCee
Q psy10572 52 ARILDIGSGS-GYL-TACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGK-HGYER--EAPYD 126 (204)
Q Consensus 52 ~~vLdiG~G~-G~~-~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~--~~~~D 126 (204)
++|--+|+|. |.. +..|++. +.+|+.+|.++..++..+..-.... ..+.......... ..... -...|
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~---G~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~e~~~~aD 74 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALK---GQSVLAWDIDAQRIKEIQDRGAIIA----EGPGLAGTAHPDLLTSDIGLAVKDAD 74 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT---TCEEEEECSCHHHHHHHHHHTSEEE----ESSSCCEEECCSEEESCHHHHHTTCS
T ss_pred CEEEEECccHHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHHcCCCch----hhhhhhhhhhhhhhhhhhHhHhcCCC
Confidence 4778899997 333 3333443 3599999999988887765421100 0011111111100 00000 14589
Q ss_pred EEEECCCcc---chhHHHHHhcCCCcEEEE
Q psy10572 127 IIHVSPSYF---TIPQKLLDQLVPGGRMVM 153 (204)
Q Consensus 127 ~v~~~~~~~---~~~~~~~~~Lk~gG~l~~ 153 (204)
+|++.-+.. .+++++..+|+++..+++
T Consensus 75 ~iii~v~~~~~~~~~~~i~~~l~~~~~iv~ 104 (184)
T d1bg6a2 75 VILIVVPAIHHASIAANIASYISEGQLIIL 104 (184)
T ss_dssp EEEECSCGGGHHHHHHHHGGGCCTTCEEEE
T ss_pred EEEEEEchhHHHHHHHHhhhccCCCCEEEE
Confidence 998765544 356778889999887654
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=86.51 E-value=0.95 Score=32.06 Aligned_cols=79 Identities=11% Similarity=-0.001 Sum_probs=48.0
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHh-CCCceEEEEEcC-HHHHHHHHHHhhhcCccccCccceEEEEecCCCCC--------
Q psy10572 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHV-MELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-------- 119 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~vD~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-------- 119 (204)
+++.+|--|++ +.++..+++.+ ..+++|+.++.+ +..++.+...+.... ..++.++..|+.+..
T Consensus 3 ~gK~alITGas-~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~-----g~~~~~~~~Dv~~~~~v~~~~~~ 76 (260)
T d1x1ta1 3 KGKVAVVTGST-SGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQH-----GVKVLYDGADLSKGEAVRGLVDN 76 (260)
T ss_dssp TTCEEEETTCS-SHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHH-----TSCEEEECCCTTSHHHHHHHHHH
T ss_pred CcCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhc-----CCcEEEEECCCCCHHHHHHHHHH
Confidence 45667755555 44555555443 244699999986 556666655543311 246788888876321
Q ss_pred --CCCCCeeEEEECCCc
Q psy10572 120 --EREAPYDIIHVSPSY 134 (204)
Q Consensus 120 --~~~~~~D~v~~~~~~ 134 (204)
...++.|+++.|++.
T Consensus 77 ~~~~~G~iDiLVnnAG~ 93 (260)
T d1x1ta1 77 AVRQMGRIDILVNNAGI 93 (260)
T ss_dssp HHHHHSCCSEEEECCCC
T ss_pred HHHHhCCCcEEEeeccc
Confidence 112679999998765
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=86.42 E-value=1.8 Score=30.39 Aligned_cols=75 Identities=15% Similarity=0.075 Sum_probs=50.0
Q ss_pred EEEEEcCCCcHHHHHHHHHh-CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC----------CC
Q psy10572 53 RILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY----------ER 121 (204)
Q Consensus 53 ~vLdiG~G~G~~~~~l~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~----------~~ 121 (204)
.+|--|+ ++.++..+++.+ ..+++|+.++.++..++...+.+...+ .++..+..|+.+.. ..
T Consensus 4 ValITGa-s~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g------~~~~~~~~Dvs~~~~v~~~~~~~~~~ 76 (257)
T d2rhca1 4 VALVTGA-TSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAG------VEADGRTCDVRSVPEIEALVAAVVER 76 (257)
T ss_dssp EEEEESC-SSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT------CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred EEEEeCC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC------CcEEEEEeecCCHHHHHHHHHHHHHH
Confidence 4454454 455555555544 244699999999998888877776532 46888889976321 11
Q ss_pred CCCeeEEEECCCc
Q psy10572 122 EAPYDIIHVSPSY 134 (204)
Q Consensus 122 ~~~~D~v~~~~~~ 134 (204)
.++.|+++.|++.
T Consensus 77 ~g~iDilVnnAG~ 89 (257)
T d2rhca1 77 YGPVDVLVNNAGR 89 (257)
T ss_dssp TCSCSEEEECCCC
T ss_pred hCCCCEEEecccc
Confidence 2679999988765
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=86.04 E-value=0.76 Score=30.10 Aligned_cols=98 Identities=9% Similarity=-0.087 Sum_probs=60.1
Q ss_pred CEEEEEcCCC-cHH-HHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeEEE
Q psy10572 52 ARILDIGSGS-GYL-TACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDIIH 129 (204)
Q Consensus 52 ~~vLdiG~G~-G~~-~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 129 (204)
.+|.-||||. |.. -....... +...+..+|.++...+...+.+.. . ....|..+.. . ..+|+|+
T Consensus 2 irvgiiG~G~~~~~~~~~~l~~~-~~~~~~~~d~~~~~~~~~~~~~~~--------~---~~~~~~~~ll-~-~~iD~V~ 67 (167)
T d1xeaa1 2 LKIAMIGLGDIAQKAYLPVLAQW-PDIELVLCTRNPKVLGTLATRYRV--------S---ATCTDYRDVL-Q-YGVDAVM 67 (167)
T ss_dssp EEEEEECCCHHHHHTHHHHHTTS-TTEEEEEECSCHHHHHHHHHHTTC--------C---CCCSSTTGGG-G-GCCSEEE
T ss_pred eEEEEEcCCHHHHHHHHHHHHhC-CCcEEEEEECCHHHHHHHHHhccc--------c---cccccHHHhc-c-cccceec
Confidence 3677899985 322 23333333 456778889998877766655422 1 1123433332 2 3589998
Q ss_pred ECCCccchhHHHHHhcCCCcEEEEEecCCCCcce
Q psy10572 130 VSPSYFTIPQKLLDQLVPGGRMVMPVGEPFKGQN 163 (204)
Q Consensus 130 ~~~~~~~~~~~~~~~Lk~gG~l~~~~~~~~~~~~ 163 (204)
+..+...-.+.+..+|+.|=.+++.-|-......
T Consensus 68 I~tp~~~H~~~~~~al~~gk~V~~EKP~~~~~~e 101 (167)
T d1xeaa1 68 IHAATDVHSTLAAFFLHLGIPTFVDKPLAASAQE 101 (167)
T ss_dssp ECSCGGGHHHHHHHHHHTTCCEEEESCSCSSHHH
T ss_pred ccccccccccccccccccccccccCCCCcCCHHH
Confidence 8877777777788888877667776665554433
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=85.71 E-value=0.98 Score=31.21 Aligned_cols=102 Identities=9% Similarity=-0.014 Sum_probs=59.2
Q ss_pred CCEEEEEcCCC-cH-HHHHHHHHhCCCceEEEE-EcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 51 GARILDIGSGS-GY-LTACLAYMAGPEGRVYGV-EHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 51 ~~~vLdiG~G~-G~-~~~~l~~~~~~~~~v~~v-D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
..+|--||||. |. ......+.. +..+++++ |.++...+.+.+.+.- ...++ ....|+.+ ......+|+
T Consensus 33 ~iriaiIG~G~~~~~~~~~~~~~~-~~~~ivav~d~~~~~a~~~~~~~~i------~~~~~-~~~~d~~e-ll~~~~iD~ 103 (221)
T d1h6da1 33 RFGYAIVGLGKYALNQILPGFAGC-QHSRIEALVSGNAEKAKIVAAEYGV------DPRKI-YDYSNFDK-IAKDPKIDA 103 (221)
T ss_dssp CEEEEEECCSHHHHHTHHHHTTTC-SSEEEEEEECSCHHHHHHHHHHTTC------CGGGE-ECSSSGGG-GGGCTTCCE
T ss_pred CEEEEEEcCcHHHHHHHHHHHHhC-CCceEEEEecCCHHHHHHHHHhhcc------ccccc-cccCchhh-hccccccee
Confidence 35888899985 22 112222333 45677765 9988877766554321 01111 11233333 233457999
Q ss_pred EEECCCccchhHHHHHhcCCCcEEEEEecCCCCc
Q psy10572 128 IHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPFKG 161 (204)
Q Consensus 128 v~~~~~~~~~~~~~~~~Lk~gG~l~~~~~~~~~~ 161 (204)
|++..+...-.+.+..+|+.|=-+++.-+-....
T Consensus 104 V~I~tp~~~H~~~~~~al~~gk~v~~EKPla~~~ 137 (221)
T d1h6da1 104 VYIILPNSLHAEFAIRAFKAGKHVMCEKPMATSV 137 (221)
T ss_dssp EEECSCGGGHHHHHHHHHHTTCEEEECSSCCSSH
T ss_pred eeeccchhhhhhHHHHhhhcchhhhcCCCccCCH
Confidence 9888777766777888887776676665544433
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=85.65 E-value=0.66 Score=31.26 Aligned_cols=77 Identities=10% Similarity=0.087 Sum_probs=46.7
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHh-CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC---CCCCCe
Q psy10572 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY---EREAPY 125 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~ 125 (204)
.+++||-.|++.|. +..+++.+ ..+++|+.++.+++.++...+.+... .++.+...|..... ..-+..
T Consensus 22 ~gK~vlItGasgGI-G~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~~~~i 93 (191)
T d1luaa1 22 KGKKAVVLAGTGPV-GMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKR-------FKVNVTAAETADDASRAEAVKGA 93 (191)
T ss_dssp TTCEEEEETTTSHH-HHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHH-------HTCCCEEEECCSHHHHHHHTTTC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhccchhhcccchHHHHHHHHHHHhc-------cchhhhhhhcccHHHHHHHhcCc
Confidence 67788877766543 33333322 13469999999999888877776542 23444555543211 011468
Q ss_pred eEEEECCCc
Q psy10572 126 DIIHVSPSY 134 (204)
Q Consensus 126 D~v~~~~~~ 134 (204)
|+++.+.+.
T Consensus 94 Dilin~Ag~ 102 (191)
T d1luaa1 94 HFVFTAGAI 102 (191)
T ss_dssp SEEEECCCT
T ss_pred CeeeecCcc
Confidence 999988654
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=85.53 E-value=2.7 Score=29.23 Aligned_cols=73 Identities=10% Similarity=0.030 Sum_probs=46.7
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHh-CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC---------
Q psy10572 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY--------- 119 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------- 119 (204)
.++.+|--|++.| ++..+++.+ ..+++|+.+|.++..++.+.+.+ +...+..|+....
T Consensus 4 ~gK~~lITGas~G-IG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~~-----------~~~~~~~Dv~~~~~v~~~~~~~ 71 (242)
T d1ulsa_ 4 KDKAVLITGAAHG-IGRATLELFAKEGARLVACDIEEGPLREAAEAV-----------GAHPVVMDVADPASVERGFAEA 71 (242)
T ss_dssp TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT-----------TCEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc-----------CCeEEEEecCCHHHHHHHHHHH
Confidence 4567776676665 444454443 24569999999998877765432 3556778865321
Q ss_pred -CCCCCeeEEEECCCc
Q psy10572 120 -EREAPYDIIHVSPSY 134 (204)
Q Consensus 120 -~~~~~~D~v~~~~~~ 134 (204)
...++.|+++.|+..
T Consensus 72 ~~~~g~iDilVnnAG~ 87 (242)
T d1ulsa_ 72 LAHLGRLDGVVHYAGI 87 (242)
T ss_dssp HHHHSSCCEEEECCCC
T ss_pred HHhcCCceEEEECCcc
Confidence 112579999988665
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=85.48 E-value=1.6 Score=30.46 Aligned_cols=74 Identities=11% Similarity=-0.021 Sum_probs=46.6
Q ss_pred EEEEcCCCcHHHHHHHHHhCC-Cc-------eEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC------
Q psy10572 54 ILDIGSGSGYLTACLAYMAGP-EG-------RVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY------ 119 (204)
Q Consensus 54 vLdiG~G~G~~~~~l~~~~~~-~~-------~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~------ 119 (204)
||--|++. .++..+++.+.. ++ .++..+.++..++.....+...+ .++.++..|..+..
T Consensus 4 vlITGas~-GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g------~~~~~~~~Dvt~~~~v~~~~ 76 (240)
T d2bd0a1 4 LLITGAGK-GIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEG------ALTDTITADISDMADVRRLT 76 (240)
T ss_dssp EEEETTTS-HHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTT------CEEEEEECCTTSHHHHHHHH
T ss_pred EEEccCCC-HHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcC------CcEEEEEecCCCHHHHHHHH
Confidence 34445554 455555544311 12 38889999998888877766532 46778888876321
Q ss_pred ----CCCCCeeEEEECCCc
Q psy10572 120 ----EREAPYDIIHVSPSY 134 (204)
Q Consensus 120 ----~~~~~~D~v~~~~~~ 134 (204)
...+..|+++.|+..
T Consensus 77 ~~~~~~~g~iDilvnnAg~ 95 (240)
T d2bd0a1 77 THIVERYGHIDCLVNNAGV 95 (240)
T ss_dssp HHHHHHTSCCSEEEECCCC
T ss_pred HHHHHHcCCcceeeccccc
Confidence 112679999988765
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=85.44 E-value=2.5 Score=29.78 Aligned_cols=78 Identities=14% Similarity=0.109 Sum_probs=52.0
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHh-CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC---------
Q psy10572 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY--------- 119 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------- 119 (204)
.++++|-.|+..| ++..+++.+ ..+++|+.++.++..++.+.+.+...+ .++.++..|+....
T Consensus 5 ~gK~alITGas~G-IG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~------~~~~~~~~D~s~~~~~~~~~~~~ 77 (258)
T d1ae1a_ 5 KGTTALVTGGSKG-IGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKG------LNVEGSVCDLLSRTERDKLMQTV 77 (258)
T ss_dssp TTCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT------CCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC------CCceEEEeecCCHHHHHHHHHHH
Confidence 5778887777655 444444332 244699999999998888877776532 46778888876321
Q ss_pred --CCCCCeeEEEECCCc
Q psy10572 120 --EREAPYDIIHVSPSY 134 (204)
Q Consensus 120 --~~~~~~D~v~~~~~~ 134 (204)
.-.+..|+++.++..
T Consensus 78 ~~~~~g~idilinnag~ 94 (258)
T d1ae1a_ 78 AHVFDGKLNILVNNAGV 94 (258)
T ss_dssp HHHTTSCCCEEEECCCC
T ss_pred HHHhCCCcEEEeccccc
Confidence 112568999887655
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=85.21 E-value=1.7 Score=31.11 Aligned_cols=79 Identities=11% Similarity=0.158 Sum_probs=50.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHh-CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC---------
Q psy10572 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY--------- 119 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------- 119 (204)
.++.+|--|++.| ++..+++.+ ..+++|+.+|.+...++.+.+.+.... ..++.++..|.....
T Consensus 24 ~gK~alITGas~G-IG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~-----g~~~~~~~~D~~~~~~v~~~~~~~ 97 (294)
T d1w6ua_ 24 QGKVAFITGGGTG-LGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQT-----GNKVHAIQCDVRDPDMVQNTVSEL 97 (294)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-----SSCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhc-----CCceEEEEecccChHHHHHHhhhh
Confidence 3467776666554 555555443 234699999999988877666554321 246778888865321
Q ss_pred -CCCCCeeEEEECCCc
Q psy10572 120 -EREAPYDIIHVSPSY 134 (204)
Q Consensus 120 -~~~~~~D~v~~~~~~ 134 (204)
...+..|+++.+...
T Consensus 98 ~~~~g~iDilvnnAg~ 113 (294)
T d1w6ua_ 98 IKVAGHPNIVINNAAG 113 (294)
T ss_dssp HHHTCSCSEEEECCCC
T ss_pred hhhccccchhhhhhhh
Confidence 123679999988665
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.69 E-value=3.6 Score=28.56 Aligned_cols=74 Identities=18% Similarity=0.126 Sum_probs=47.2
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHh-CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC------CCC
Q psy10572 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY------ERE 122 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~~ 122 (204)
.++++|--|++.| ++..+++.+ ..+++|+.++.++..++...+.. .++..+..|..+.. ..-
T Consensus 4 ~GK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~----------~~~~~~~~Dv~~~~~v~~~~~~~ 72 (242)
T d1cyda_ 4 SGLRALVTGAGKG-IGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC----------PGIEPVCVDLGDWDATEKALGGI 72 (242)
T ss_dssp TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS----------TTCEEEECCTTCHHHHHHHHTTC
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc----------CCCeEEEEeCCCHHHHHHHHHHc
Confidence 4677886776655 444444443 24569999999987766655432 35667777865321 122
Q ss_pred CCeeEEEECCCc
Q psy10572 123 APYDIIHVSPSY 134 (204)
Q Consensus 123 ~~~D~v~~~~~~ 134 (204)
++.|+++.|+..
T Consensus 73 g~iDilVnnAg~ 84 (242)
T d1cyda_ 73 GPVDLLVNNAAL 84 (242)
T ss_dssp CCCSEEEECCCC
T ss_pred CCCeEEEECCcc
Confidence 679999988765
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.02 E-value=3.2 Score=27.18 Aligned_cols=92 Identities=14% Similarity=0.021 Sum_probs=56.1
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCee
Q psy10572 48 IKPGARILDIGSGS-GYLTACLAYMAGPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYD 126 (204)
Q Consensus 48 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D 126 (204)
.-.++++.-+|-|. |.-....++.+ .++|+.+|++|...-.|.. ....+...+ +. ...-|
T Consensus 21 ~l~Gk~v~V~GyG~iG~g~A~~~rg~--G~~V~v~e~dp~~al~A~~------------dG~~v~~~~--~a---~~~ad 81 (163)
T d1li4a1 21 MIAGKVAVVAGYGDVGKGCAQALRGF--GARVIITEIDPINALQAAM------------EGYEVTTMD--EA---CQEGN 81 (163)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHH------------TTCEECCHH--HH---TTTCS
T ss_pred eecCCEEEEeccccccHHHHHHHHhC--CCeeEeeecccchhHHhhc------------CceEeeehh--hh---hhhcc
Confidence 46788898888885 55544445544 4799999999965333322 122222211 11 13478
Q ss_pred EEEECCCccc-hhHHHHHhcCCCcEEEEEecCCC
Q psy10572 127 IIHVSPSYFT-IPQKLLDQLVPGGRMVMPVGEPF 159 (204)
Q Consensus 127 ~v~~~~~~~~-~~~~~~~~Lk~gG~l~~~~~~~~ 159 (204)
+++......+ +-.+-.+.||+|.+|.- +.+.+
T Consensus 82 ivvtaTGn~~vI~~eh~~~MKdgaIL~N-~Ghfd 114 (163)
T d1li4a1 82 IFVTTTGCIDIILGRHFEQMKDDAIVCN-IGHFD 114 (163)
T ss_dssp EEEECSSCSCSBCHHHHTTCCTTEEEEE-CSSST
T ss_pred EEEecCCCccchhHHHHHhccCCeEEEE-ecccc
Confidence 8888888766 44777788887766644 44333
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=83.73 E-value=1.9 Score=30.44 Aligned_cols=75 Identities=16% Similarity=0.140 Sum_probs=48.2
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHh-CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC---------
Q psy10572 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY--------- 119 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------- 119 (204)
.++.+|--|++.| ++..+++.+ ..+++|+.+|.++..++...+.+ ..++.++..|+....
T Consensus 4 ~gK~alVTGas~G-IG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~---------~~~~~~~~~Dv~~~~~v~~~~~~~ 73 (254)
T d1hdca_ 4 SGKTVIITGGARG-LGAEAARQAVAAGARVVLADVLDEEGAATAREL---------GDAARYQHLDVTIEEDWQRVVAYA 73 (254)
T ss_dssp CCSEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT---------GGGEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCcCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---------CCceEEEEcccCCHHHHHHHHHHH
Confidence 4667787777665 444444433 24469999999988776654433 246788889876321
Q ss_pred -CCCCCeeEEEECCCc
Q psy10572 120 -EREAPYDIIHVSPSY 134 (204)
Q Consensus 120 -~~~~~~D~v~~~~~~ 134 (204)
...++.|+++.++..
T Consensus 74 ~~~~g~iDilVnnAg~ 89 (254)
T d1hdca_ 74 REEFGSVDGLVNNAGI 89 (254)
T ss_dssp HHHHSCCCEEEECCCC
T ss_pred HHHcCCccEEEecCcc
Confidence 112579999988765
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=83.39 E-value=4.3 Score=28.54 Aligned_cols=78 Identities=18% Similarity=0.153 Sum_probs=47.6
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHhC-CCceEEEEEcCH-HHHHHHHHHhhhcCccccCccceEEEEecCCCCC--------
Q psy10572 50 PGARILDIGSGSGYLTACLAYMAG-PEGRVYGVEHVM-ELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-------- 119 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~vD~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-------- 119 (204)
.++.+|--|++.| ++..+++.+. .+++|+.++.+. ..++...+.+...+ .++..+..|+.+..
T Consensus 6 ~gK~alITGas~G-IG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~g------~~~~~~~~Dvt~~~~v~~~~~~ 78 (261)
T d1geea_ 6 EGKVVVITGSSTG-LGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVG------GEAIAVKGDVTVESDVINLVQS 78 (261)
T ss_dssp TTCEEEETTCSSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT------CEEEEEECCTTSHHHHHHHHHH
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhcC------CcEEEEEccCCCHHHHHHHHHH
Confidence 3556665555554 5555555442 346999999874 45666555555422 46777888876321
Q ss_pred --CCCCCeeEEEECCCc
Q psy10572 120 --EREAPYDIIHVSPSY 134 (204)
Q Consensus 120 --~~~~~~D~v~~~~~~ 134 (204)
...++.|+++.|+..
T Consensus 79 ~~~~~G~iDiLVnnAG~ 95 (261)
T d1geea_ 79 AIKEFGKLDVMINNAGL 95 (261)
T ss_dssp HHHHHSCCCEEEECCCC
T ss_pred HHHHhCCCCEeecccee
Confidence 112579999998765
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=82.91 E-value=2.9 Score=29.64 Aligned_cols=81 Identities=16% Similarity=0.156 Sum_probs=53.0
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHh-CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC---------
Q psy10572 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY--------- 119 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------- 119 (204)
.++++|--|++.| ++..+++.+ ..+++|+.+|.++..++.+.+.+...+ ....++..+..|+.+..
T Consensus 3 ~gK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~---~~~~~~~~~~~Dv~~~~~v~~~~~~~ 78 (274)
T d1xhla_ 3 SGKSVIITGSSNG-IGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAG---VPAEKINAVVADVTEASGQDDIINTT 78 (274)
T ss_dssp TTCEEEETTCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT---CCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC---CCCcceEEEEeeCCCHHHHHHHHHHH
Confidence 4567776666554 454454443 244699999999998888887776532 12347888999976421
Q ss_pred -CCCCCeeEEEECCCc
Q psy10572 120 -EREAPYDIIHVSPSY 134 (204)
Q Consensus 120 -~~~~~~D~v~~~~~~ 134 (204)
...++.|+++.++..
T Consensus 79 ~~~~G~iDilVnnAG~ 94 (274)
T d1xhla_ 79 LAKFGKIDILVNNAGA 94 (274)
T ss_dssp HHHHSCCCEEEECCCC
T ss_pred HHHcCCceEEEeeccc
Confidence 112579999988653
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=82.73 E-value=2.7 Score=24.78 Aligned_cols=71 Identities=13% Similarity=0.152 Sum_probs=39.6
Q ss_pred CCCCCEEEEEcCC-CcH--HHHHHHHHhCCCceEEEEEcCHH-HHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCC
Q psy10572 48 IKPGARILDIGSG-SGY--LTACLAYMAGPEGRVYGVEHVME-LAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREA 123 (204)
Q Consensus 48 ~~~~~~vLdiG~G-~G~--~~~~l~~~~~~~~~v~~vD~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 123 (204)
+....+|.=+|.| +|- ++..+.... ..|.|.|.... ..+... . ..+.+..+..... . .
T Consensus 5 ~~~~~~ihfiGigG~GMs~LA~~L~~~G---~~VsGSD~~~~~~~~~L~----~--------~Gi~v~~g~~~~~-i--~ 66 (96)
T d1p3da1 5 MRRVQQIHFIGIGGAGMSGIAEILLNEG---YQISGSDIADGVVTQRLA----Q--------AGAKIYIGHAEEH-I--E 66 (96)
T ss_dssp CTTCCEEEEETTTSTTHHHHHHHHHHHT---CEEEEEESCCSHHHHHHH----H--------TTCEEEESCCGGG-G--T
T ss_pred chhCCEEEEEEECHHHHHHHHHHHHhCC---CEEEEEeCCCChhhhHHH----H--------CCCeEEECCcccc-C--C
Confidence 4556678888765 454 344445543 49999997532 222221 1 2455555543333 2 3
Q ss_pred CeeEEEECCCccc
Q psy10572 124 PYDIIHVSPSYFT 136 (204)
Q Consensus 124 ~~D~v~~~~~~~~ 136 (204)
..|+|+.......
T Consensus 67 ~~d~vV~S~AI~~ 79 (96)
T d1p3da1 67 GASVVVVSSAIKD 79 (96)
T ss_dssp TCSEEEECTTSCT
T ss_pred CCCEEEECCCcCC
Confidence 4788888776654
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=82.64 E-value=3.3 Score=28.82 Aligned_cols=78 Identities=14% Similarity=0.061 Sum_probs=47.9
Q ss_pred CCCEEEEEcCCCc-HHHHHHHHHh-CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC--------
Q psy10572 50 PGARILDIGSGSG-YLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-------- 119 (204)
Q Consensus 50 ~~~~vLdiG~G~G-~~~~~l~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-------- 119 (204)
.++.+|--|++++ .++..+++.+ ..+++|+..+.++...+.+.+.... ..+..++..|..+..
T Consensus 7 ~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~-------~~~~~~~~~D~~~~~~v~~~~~~ 79 (256)
T d1ulua_ 7 SGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEA-------LGGALLFRADVTQDEELDALFAG 79 (256)
T ss_dssp TTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHH-------TTCCEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHhhhc-------cCcccccccccCCHHHHHHHHHH
Confidence 5678888886542 2444444333 1346898889988877776655444 235667788865321
Q ss_pred --CCCCCeeEEEECCCc
Q psy10572 120 --EREAPYDIIHVSPSY 134 (204)
Q Consensus 120 --~~~~~~D~v~~~~~~ 134 (204)
...++.|+++.+...
T Consensus 80 ~~~~~g~iDilVnnag~ 96 (256)
T d1ulua_ 80 VKEAFGGLDYLVHAIAF 96 (256)
T ss_dssp HHHHHSSEEEEEECCCC
T ss_pred HHHhcCCceEEEecccc
Confidence 112579999887654
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=82.25 E-value=1.6 Score=30.74 Aligned_cols=79 Identities=8% Similarity=-0.021 Sum_probs=49.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHh-CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC---------
Q psy10572 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY--------- 119 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------- 119 (204)
.++.+|--|++ +.++..+++.+ ..+++|+.++.++..++.+.+.+.... ..++..+..|+.+..
T Consensus 8 ~gK~alITGas-~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~-----g~~~~~~~~Dv~~~~~v~~~~~~~ 81 (260)
T d1h5qa_ 8 VNKTIIVTGGN-RGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEF-----GVKTKAYQCDVSNTDIVTKTIQQI 81 (260)
T ss_dssp TTEEEEEETTT-SHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHH-----TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHh-----CCceEEEEccCCCHHHHHHHHHHH
Confidence 45677766655 45555555543 245699999998877666555443211 246788888876321
Q ss_pred -CCCCCeeEEEECCCc
Q psy10572 120 -EREAPYDIIHVSPSY 134 (204)
Q Consensus 120 -~~~~~~D~v~~~~~~ 134 (204)
...++.|+++.++..
T Consensus 82 ~~~~g~iDilVnnAg~ 97 (260)
T d1h5qa_ 82 DADLGPISGLIANAGV 97 (260)
T ss_dssp HHHSCSEEEEEECCCC
T ss_pred HHHhCCCcEecccccc
Confidence 123689999988764
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=82.13 E-value=1.8 Score=30.41 Aligned_cols=75 Identities=19% Similarity=0.168 Sum_probs=48.3
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHh-CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC---------
Q psy10572 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY--------- 119 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------- 119 (204)
.++++|--|++.| ++..+++.+ ..+++|+.+|.+.+.++...+.+. .++..+..|+.+..
T Consensus 4 ~gK~alVTGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~---------~~~~~~~~Dvt~~~~v~~~~~~~ 73 (256)
T d1k2wa_ 4 DGKTALITGSARG-IGRAFAEAYVREGARVAIADINLEAARATAAEIG---------PAACAIALDVTDQASIDRCVAEL 73 (256)
T ss_dssp TTEEEEEETCSSH-HHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHHC---------TTEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC---------CceEEEEeeCCCHHHHHHHHHHH
Confidence 4567776666554 444444443 245699999999887776655432 36778888876321
Q ss_pred -CCCCCeeEEEECCCc
Q psy10572 120 -EREAPYDIIHVSPSY 134 (204)
Q Consensus 120 -~~~~~~D~v~~~~~~ 134 (204)
...+..|+++.++..
T Consensus 74 ~~~~g~iDilVnnAg~ 89 (256)
T d1k2wa_ 74 LDRWGSIDILVNNAAL 89 (256)
T ss_dssp HHHHSCCCEEEECCCC
T ss_pred HHHhCCccEEEeeccc
Confidence 112579999998765
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=82.06 E-value=0.95 Score=30.46 Aligned_cols=40 Identities=20% Similarity=0.236 Sum_probs=27.6
Q ss_pred EEEEEcCCCcHHHHHHHHHhCCCceEEEEEcCHHHHHHHHHH
Q psy10572 53 RILDIGSGSGYLTACLAYMAGPEGRVYGVEHVMELAESSIKN 94 (204)
Q Consensus 53 ~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~ 94 (204)
+|.-+|. |+.+..++..+..+.+|+|+|+++..++..+..
T Consensus 2 kI~ViGl--G~vGl~~a~~~a~g~~V~g~Din~~~v~~l~~g 41 (196)
T d1dlja2 2 KIAVAGS--GYVGLSLGVLLSLQNEVTIVDILPSKVDKINNG 41 (196)
T ss_dssp EEEEECC--SHHHHHHHHHHTTTSEEEEECSCHHHHHHHHTT
T ss_pred EEEEECC--ChhHHHHHHHHHCCCcEEEEECCHHHHHHHhhc
Confidence 4566665 455555554444456999999999998877643
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=81.18 E-value=1.9 Score=28.45 Aligned_cols=101 Identities=11% Similarity=-0.080 Sum_probs=59.2
Q ss_pred CCEEEEEcCCC-cHH-HHHHHHHhCCCceEEEE-EcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCCCCCCCeeE
Q psy10572 51 GARILDIGSGS-GYL-TACLAYMAGPEGRVYGV-EHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGYEREAPYDI 127 (204)
Q Consensus 51 ~~~vLdiG~G~-G~~-~~~l~~~~~~~~~v~~v-D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 127 (204)
..+|.-||||. |.. -....+......+++++ |.++...+...+.... . ....+..+. ......|+
T Consensus 3 kirigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~--------~---~~~~~~~el-l~~~~id~ 70 (181)
T d1zh8a1 3 KIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGN--------P---AVFDSYEEL-LESGLVDA 70 (181)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSS--------C---EEESCHHHH-HHSSCCSE
T ss_pred CcEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccccc--------c---ceeeeeecc-ccccccce
Confidence 34788899985 321 23333333233467765 8888776655444321 1 122332222 23356899
Q ss_pred EEECCCccchhHHHHHhcCCCcEEEEEecCCCCcce
Q psy10572 128 IHVSPSYFTIPQKLLDQLVPGGRMVMPVGEPFKGQN 163 (204)
Q Consensus 128 v~~~~~~~~~~~~~~~~Lk~gG~l~~~~~~~~~~~~ 163 (204)
|++..+...-.+.+..+|+.|=.+++.-|-.....+
T Consensus 71 v~I~tp~~~h~~~~~~al~~gk~V~~EKPl~~~~~e 106 (181)
T d1zh8a1 71 VDLTLPVELNLPFIEKALRKGVHVICEKPISTDVET 106 (181)
T ss_dssp EEECCCGGGHHHHHHHHHHTTCEEEEESSSSSSHHH
T ss_pred eeccccccccccccccccccchhhhcCCCCcCCHHH
Confidence 988877766677777888877777776665554444
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=80.95 E-value=2.9 Score=29.04 Aligned_cols=75 Identities=11% Similarity=0.084 Sum_probs=48.8
Q ss_pred CEEEEEcCCCcHHHHHHHHHh----CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC--------
Q psy10572 52 ARILDIGSGSGYLTACLAYMA----GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY-------- 119 (204)
Q Consensus 52 ~~vLdiG~G~G~~~~~l~~~~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-------- 119 (204)
++||--|++ +.++..+++.+ ..+.+|+..+.++..++.+++.... ..++.++..|+.+..
T Consensus 3 KtilITGas-~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~Dvs~~~~v~~~~~~ 74 (248)
T d1snya_ 3 NSILITGCN-RGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKN-------HSNIHILEIDLRNFDAYDKLVAD 74 (248)
T ss_dssp SEEEESCCS-SHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHH-------CTTEEEEECCTTCGGGHHHHHHH
T ss_pred CEEEEeCCC-CHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHhc-------CCcEEEEEEEeccHHHHHHHHhh
Confidence 467755554 45666666543 2356899999988877766554433 247888999976421
Q ss_pred ----CCCCCeeEEEECCCc
Q psy10572 120 ----EREAPYDIIHVSPSY 134 (204)
Q Consensus 120 ----~~~~~~D~v~~~~~~ 134 (204)
...+..|+++.|+..
T Consensus 75 i~~~~~~~~iDiLvnNAg~ 93 (248)
T d1snya_ 75 IEGVTKDQGLNVLFNNAGI 93 (248)
T ss_dssp HHHHHGGGCCSEEEECCCC
T ss_pred hHHHhhcCCcceEEeeccc
Confidence 123579999998764
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=80.73 E-value=3.9 Score=28.71 Aligned_cols=81 Identities=15% Similarity=0.053 Sum_probs=51.6
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHh-CCCceEEEEEcCHHHHHHHHHHhhhcCccccCccceEEEEecCCCCC---------
Q psy10572 50 PGARILDIGSGSGYLTACLAYMA-GPEGRVYGVEHVMELAESSIKNIDKGNSELLDQGRVQFVVWNGKHGY--------- 119 (204)
Q Consensus 50 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------- 119 (204)
.++.+|--|++ +.++..+++.+ ..+++|+.++.++..++.+.+.+...+ ....++.++..|+....
T Consensus 4 ~gKvalVTGas-~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~---~~~~~~~~~~~Dvt~~~~v~~~~~~~ 79 (264)
T d1spxa_ 4 AEKVAIITGSS-NGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAG---VSEQNVNSVVADVTTDAGQDEILSTT 79 (264)
T ss_dssp TTCEEEETTTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT---CCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCEEEEeCcC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC---CCcCceEEEEccCCCHHHHHHHHHHH
Confidence 35566655555 44555554443 245699999999999888877776532 12346888999976321
Q ss_pred -CCCCCeeEEEECCCc
Q psy10572 120 -EREAPYDIIHVSPSY 134 (204)
Q Consensus 120 -~~~~~~D~v~~~~~~ 134 (204)
...++.|+++.|+..
T Consensus 80 ~~~~g~iDilvnnAG~ 95 (264)
T d1spxa_ 80 LGKFGKLDILVNNAGA 95 (264)
T ss_dssp HHHHSCCCEEEECCC-
T ss_pred HHHhCCCCEeeccccc
Confidence 112579999988653
|