Psyllid ID: psy10604

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-----
Protein Sequence
MNVYNVDLGAFGTMLEKKEKEEERKEEEEEEEKNISAIGPAVTKLRQEAKIHNAVISLEPCYDCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAITDATSLPCSVILRTLRSS
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHHHHHHHHcHHccccccHHHHHHHccHHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHHHccccccccHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHccccHHHHHHccccccccHccccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHcccccccccccccHHHHcccc
Coil and Loop (DISEMBL)
mnvynvdlGAFGTMLEKKEKEEERKEEEEEEEKNISAIGPAVTKLRQEAKIHNAVislepcydcysdpntsFLRAARAGHLDKLRELLEAGvdintsnasdpntSFLRAARAGHLDKLRELLEAGvdintsnatskklDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKggckvdastkkgnTALHIAALDSLVTDIASsaitdatslpcSVILRTLRSS
Flexible Loop (DISEMBL)
mnvynvdlgafgtmlekkekeeerkeeeeeeeknisaigpavTKLRQEAKIHNAVISLEPCYDCYSDPNTSFLRAARAGHLDKLRELLEAGVdintsnasdpntsfLRAARAGHLDKLRELLEAGvdintsnatskkldnQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAitdatslpcsvilrtlrss
Low Complexity Region (SEG)
MNVYNVDLGAFGTMLekkekeeerkeeeeeeekNISAIGPAVTKLRQEAKIHNAVISLEPCYDCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAITDATSLPCSVILRTLRSS
Disordered region (IsUnstruct)
*****************************************VTKLRQEAKIHNAVISLEPCYDCYSDPNTSFLRAARAGHLDKLRELLEAGVDI************LRAARAGHLDKLRELLEAGVDI*************LNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAITDATSLPCSVILR*****
Disordered Region (DISOPRED)
MNVYNVDLGAFGTMLEKKEKEEERKEEEEEEEKNISAIGPAVTKLRQEAKIHNAVISLEPCYDCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAITDATSLPCSV********
Disordered Region (DISEMBL)
MNVYNVDLGAFGTMLE*******************SAIGPAVTKLRQEAKIHNAVISLEPCYDCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAITDATSLPCSVILRTLRSS
Disordered Region (DISPRO)
*NVYNVDLGAFGTMLEKKEKEEERKEEEEEEEKNISAIGPAVTKLRQEAKIHNAVISLEPCYDCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAITDATSLPCSVILRTLRSS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNVYNVDLGAxxxxxxxxxxxxxxxxxxxxxxxxxxxxGPAVTKLRQEAKIHNAVISLEPCYDCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAITDATSLPCSVILRTLRSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	225	2.2.26 [Sep-21-2011]
Q8C8R3	3898	Ankyrin-2 OS=Mus musculus	yes	N/A	0.346	0.020	0.562	4e-21
Q01484	3957	Ankyrin-2 OS=Homo sapiens	yes	N/A	0.346	0.019	0.562	5e-21
Q12955	4377	Ankyrin-3 OS=Homo sapiens	no	N/A	0.333	0.017	0.526	7e-18
G5E8K5	1961	Ankyrin-3 OS=Mus musculus	yes	N/A	0.346	0.039	0.520	7e-18
Q02357	1862	Ankyrin-1 OS=Mus musculus	no	N/A	0.346	0.041	0.5	4e-15
P16157	1881	Ankyrin-1 OS=Homo sapiens	no	N/A	0.346	0.041	0.5	4e-15
Q7T163	1672	Kinase D-interacting subs	no	N/A	0.582	0.078	0.333	6e-11
Q9EQG6	1762	Kinase D-interacting subs	no	N/A	0.537	0.068	0.306	1e-09
Q495B1	522	Ankyrin repeat and death	no	N/A	0.475	0.204	0.365	1e-09
Q9ULH0	1771	Kinase D-interacting subs	no	N/A	0.528	0.067	0.328	2e-09

>sp|Q8C8R3|ANK2_MOUSE Ankyrin-2 OS=Mus musculus GN=Ank2 PE=1 SV=2

 Score =  101 bits (252), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 54/96 (56%), Positives = 64/96 (66%), Gaps = 18/96 (18%)

Query: 100 SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHL 159
           SD N SFLRAARAG+LDK+ E L+ G+DINT N                   NGLNALHL
Sbjct: 29  SDSNASFLRAARAGNLDKVVEYLKGGIDINTCN------------------QNGLNALHL 70

Query: 160 AAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAAL 195
           AAK+GH  +V+ LL  G  VD++TKKGNTALHIA+L
Sbjct: 71  AAKEGHVGLVQELLGRGSSVDSATKKGNTALHIASL 106

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes (By similarity). Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.
Mus musculus (taxid: 10090)

>sp|Q01484|ANK2_HUMAN Ankyrin-2 OS=Homo sapiens GN=ANK2 PE=1 SV=4

 Score =  101 bits (251), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 54/96 (56%), Positives = 64/96 (66%), Gaps = 18/96 (18%)

Query: 100 SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHL 159
           SD N SFLRAARAG+LDK+ E L+ G+DINT N                   NGLNALHL
Sbjct: 29  SDSNASFLRAARAGNLDKVVEYLKGGIDINTCN------------------QNGLNALHL 70

Query: 160 AAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAAL 195
           AAK+GH  +V+ LL  G  VD++TKKGNTALHIA+L
Sbjct: 71  AAKEGHVGLVQELLGRGSSVDSATKKGNTALHIASL 106

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes. Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.

Homo sapiens (taxid: 9606)

>sp|Q12955|ANK3_HUMAN Ankyrin-3 OS=Homo sapiens GN=ANK3 PE=1 SV=3

 Score = 90.9 bits (224), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 49/93 (52%), Positives = 59/93 (63%), Gaps = 18/93 (19%)

Query: 103 NTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAK 162
           N S+LRAARAGHL+K  + ++ GVDIN  N                   NGLNALHLA+K
Sbjct: 42  NASYLRAARAGHLEKALDYIKNGVDINICN------------------QNGLNALHLASK 83

Query: 163 DGHTTVVKALLKGGCKVDASTKKGNTALHIAAL 195
           +GH  VV  LL+    VDA+TKKGNTALHIA+L
Sbjct: 84  EGHVEVVSELLQREANVDAATKKGNTALHIASL 116

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments.

Homo sapiens (taxid: 9606)

>sp|G5E8K5|ANK3_MOUSE Ankyrin-3 OS=Mus musculus GN=Ank3 PE=1 SV=1

 Score = 90.9 bits (224), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 50/96 (52%), Positives = 61/96 (63%), Gaps = 18/96 (18%)

Query: 100 SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHL 159
           SD N S+LRAARAGHL+K  + ++ GVD+N  N                   NGLNALHL
Sbjct: 22  SDANASYLRAARAGHLEKALDYIKNGVDVNICN------------------QNGLNALHL 63

Query: 160 AAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAAL 195
           A+K+GH  VV  LL+    VDA+TKKGNTALHIA+L
Sbjct: 64  ASKEGHVEVVSELLQREANVDAATKKGNTALHIASL 99

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments (By similarity). In skeletal muscle, required for costamere localization of DMD and betaDAG1.

Mus musculus (taxid: 10090)

>sp|Q02357|ANK1_MOUSE Ankyrin-1 OS=Mus musculus GN=Ank1 PE=1 SV=2

 Score = 81.6 bits (200), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 48/96 (50%), Positives = 58/96 (60%), Gaps = 18/96 (18%)

Query: 100 SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHL 159
           +D  TSFLRAAR+G+LDK  + L  GVDINT N                   NGLN LHL
Sbjct: 6   ADAATSFLRAARSGNLDKALDHLRNGVDINTCN------------------QNGLNGLHL 47

Query: 160 AAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAAL 195
           A+K+GH  +V  LL     ++ +TKKGNTALHIAAL
Sbjct: 48  ASKEGHVKMVVELLHKEIILETTTKKGNTALHIAAL 83

Attaches integral membrane proteins to cytoskeletal elements; binds to the erythrocyte membrane protein band 4.2, to Na-K ATPase, to the lymphocyte membrane protein GP85, and to the cytoskeletal proteins fodrin, tubulin, vimentin and desmin. Erythrocyte ankyrins also link spectrin (beta chain) to the cytoplasmic domain of the erythrocytes anion exchange protein; they retain most or all of these binding functions. In skeletal muscle, isoform Mu7 together with obscurin may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Mus musculus (taxid: 10090)

>sp|P16157|ANK1_HUMAN Ankyrin-1 OS=Homo sapiens GN=ANK1 PE=1 SV=3

 Score = 81.6 bits (200), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 48/96 (50%), Positives = 58/96 (60%), Gaps = 18/96 (18%)

Query: 100 SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHL 159
           +D  TSFLRAAR+G+LDK  + L  GVDINT N                   NGLN LHL
Sbjct: 10  ADAATSFLRAARSGNLDKALDHLRNGVDINTCN------------------QNGLNGLHL 51

Query: 160 AAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAAL 195
           A+K+GH  +V  LL     ++ +TKKGNTALHIAAL
Sbjct: 52  ASKEGHVKMVVELLHKEIILETTTKKGNTALHIAAL 87

Isoform Mu17 together with obscurin in skeletal muscle may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Homo sapiens (taxid: 9606)

>sp|Q7T163|KDIS_DANRE Kinase D-interacting substrate of 220 kDa OS=Danio rerio GN=kidins220 PE=2 SV=2

 Score = 67.8 bits (164), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 77/162 (47%), Gaps = 31/162 (19%)

Query: 41  AVTKLRQEAKIHNAVISLEPCYDCYSDPNTS--------FLRAARAGHLDKLRELLEAGV 92
           A+T    + ++  A + LE      ++PNT+         + AA  GH + ++ LLE G 
Sbjct: 107 ALTWASYKGRVEVATVLLENG----ANPNTTGQQYSVYPIIWAAGRGHAEIVKLLLEHGA 162

Query: 93  DINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNN 152
            +N S+     T  + AAR GH D +  LLE G D++   A                  N
Sbjct: 163 KVNCSDKYG-TTPLIWAARKGHYDCVMHLLENGADVDQEGA------------------N 203

Query: 153 GLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
            + AL +A K G+T VVK LLK    V+ + K GNTAL IAA
Sbjct: 204 SMTALIVAVKGGYTEVVKELLKRNPNVNMTDKDGNTALMIAA 245

Downstream target for both neurotrophin and ephrin receptors.

Danio rerio (taxid: 7955)

>sp|Q9EQG6|KDIS_RAT Kinase D-interacting substrate of 220 kDa OS=Rattus norvegicus GN=Kidins220 PE=1 SV=2

 Score = 63.2 bits (152), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 73/147 (49%), Gaps = 26/147 (17%)

Query: 67  DPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGV 126
           D NT+ + A++ GH++ +++LL+AG  +N  + S  +T  + A R GH++ +R LL+   
Sbjct: 235 DGNTALMIASKEGHIEIVQDLLDAGTYVNIPDRSG-DTVLIGAVRGGHVEIVRALLQKYA 293

Query: 127 DINTSNATSKKLDNQLNIHQKNIKNNGLNA---------LHLAAKDGHTTVVKA------ 171
           DI+      +  DN+  ++    K N               +  KDG T ++KA      
Sbjct: 294 DIDI-----RGQDNKTALYWAVEKGNATMVRDILQCNPDTEICTKDGETPLIKATKMRNI 348

Query: 172 -----LLKGGCKVDASTKKGNTALHIA 193
                LL  G KV A  KKG+T LH+A
Sbjct: 349 EVVELLLDKGAKVSAVDKKGDTPLHVA 375

Promotes a prolonged MAP-kinase signaling by neurotrophins through activation of a Rap1-dependent mechanism. Provides a docking site for the CRKL-C3G complex, resulting in Rap1-dependent sustained ERK activation. May play an important role in regulating postsynaptic signal transduction through the syntrophin-mediated localization of receptor tyrosine kinases such as EPHA4. In cooperation with SNTA1 can enhance EPHA4-induced JAK/STAT activation. May play a role in neurotrophin- and ephrin-mediated neuronal outgrowth and in axon guidance during neural development and in neuronal regeneration.

Rattus norvegicus (taxid: 10116)

>sp|Q495B1|AKD1A_HUMAN Ankyrin repeat and death domain-containing protein 1A OS=Homo sapiens GN=ANKDD1A PE=2 SV=2

 Score = 63.2 bits (152), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/126 (36%), Positives = 63/126 (50%), Gaps = 19/126 (15%)

Query: 70  TSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDIN 129
           T+F RAA  G LD L  L+ +G D N  +  + NT+   AA  GH+  L+ L++ G+D+ 
Sbjct: 161 TAFHRAAEHGQLDALDFLVGSGCDHNVKD-KEGNTALHLAAGRGHMAVLQRLVDIGLDLE 219

Query: 130 TSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTA 189
             NA                   GL ALH AA   H   V+ LL+ G  V+A T+K  + 
Sbjct: 220 EQNA------------------EGLTALHSAAGGSHPDCVQLLLRAGSTVNALTQKNLSC 261

Query: 190 LHIAAL 195
           LH AAL
Sbjct: 262 LHYAAL 267

Homo sapiens (taxid: 9606)

>sp|Q9ULH0|KDIS_HUMAN Kinase D-interacting substrate of 220 kDa OS=Homo sapiens GN=KIDINS220 PE=1 SV=3

 Score = 63.2 bits (152), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 66/143 (46%), Gaps = 24/143 (16%)

Query: 52  HNAVISLEPCYDCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAAR 111
           H A  S+   Y  Y       + AA  GH D +  LL+ G  +N S+     T  + AAR
Sbjct: 126 HGANPSVTGLYSVYP-----IIWAAGRGHADIVHLLLQNGAKVNCSDKYG-TTPLVWAAR 179

Query: 112 AGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKA 171
            GHL+ ++ LL  G D++   A                  N + AL +A K G+T  VK 
Sbjct: 180 KGHLECVKHLLAMGADVDQEGA------------------NSMTALIVAVKGGYTQSVKE 221

Query: 172 LLKGGCKVDASTKKGNTALHIAA 194
           +LK    V+ + K GNTAL IA+
Sbjct: 222 ILKRNPNVNLTDKDGNTALMIAS 244

Promotes a prolonged MAP-kinase signaling by neurotrophins through activation of a Rap1-dependent mechanism. Provides a docking site for the CRKL-C3G complex, resulting in Rap1-dependent sustained ERK activation. May play an important role in regulating postsynaptic signal transduction through the syntrophin-mediated localization of receptor tyrosine kinases such as EPHA4. In cooperation with SNTA1 can enhance EPHA4-induced JAK/STAT activation. May play a role in neurotrophin- and ephrin-mediated neuronal outgrowth and in axon guidance during neural development and in neuronal regeneration (By similarity). Modulates stress-induced apoptosis of melanoma cells via regulation of the MEK/ERK signaling pathway.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	225
328786387	6029	PREDICTED: hypothetical protein LOC40905	0.346	0.012	0.614	2e-22
345488337	7482	PREDICTED: hypothetical protein LOC10012	0.364	0.010	0.59	4e-22
340713436	6672	PREDICTED: hypothetical protein LOC10064	0.346	0.011	0.604	6e-22
350425715	4893	PREDICTED: hypothetical protein LOC10074	0.346	0.015	0.604	8e-22
332022332	7686	Ankyrin-2 [Acromyrmex echinatior]	0.342	0.010	0.6	1e-21
270004596	7005	hypothetical protein TcasGA2_TC003960 [T	0.346	0.011	0.583	2e-21
322778809	1346	hypothetical protein SINV_06859 [Solenop	0.346	0.057	0.604	5e-21
383847150	874	PREDICTED: ankyrin-2 [Megachile rotundat	0.346	0.089	0.604	1e-20
189235752	2692	PREDICTED: similar to ankyrin 2,3/unc44	0.346	0.028	0.581	3e-20
189235951	1719	PREDICTED: similar to ankyrin 2,3/unc44	0.373	0.048	0.549	7e-20

>gi|328786387|ref|XP_392578.4| PREDICTED: hypothetical protein LOC409051 [Apis mellifera]

 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 59/96 (61%), Positives = 68/96 (70%), Gaps = 18/96 (18%)

Query: 100 SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHL 159
           SDP+T+FLRAARAG L+K+ E LE+GVDIN SNA                  NGLNALHL
Sbjct: 76  SDPSTAFLRAARAGQLEKVLEYLESGVDINASNA------------------NGLNALHL 117

Query: 160 AAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAAL 195
           AAKDGH  +V+ LLK G  VDA+TKKGNTALHIA+L
Sbjct: 118 AAKDGHLEIVRELLKRGAVVDAATKKGNTALHIASL 153

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345488337|ref|XP_001606081.2| PREDICTED: hypothetical protein LOC100122475 [Nasonia vitripennis]

 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 59/100 (59%), Positives = 67/100 (67%), Gaps = 18/100 (18%)

Query: 96  TSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLN 155
           T    DP+TSFLRAARAG L+K+ E L+AGVDIN SNA                  NGLN
Sbjct: 35  TGKQGDPSTSFLRAARAGQLEKVLEFLDAGVDINASNA------------------NGLN 76

Query: 156 ALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAAL 195
           ALHLAAKDGH  +V+ LL  G  VDA+TKKGNTALHIA+L
Sbjct: 77  ALHLAAKDGHLEIVRELLARGAIVDAATKKGNTALHIASL 116

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340713436|ref|XP_003395249.1| PREDICTED: hypothetical protein LOC100642686 [Bombus terrestris]

 Score =  110 bits (274), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 58/96 (60%), Positives = 67/96 (69%), Gaps = 18/96 (18%)

Query: 100 SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHL 159
           SDP+T+FLRAARAG L+K+ E LE+GVDIN SNA                  NGLNALHL
Sbjct: 74  SDPSTAFLRAARAGQLEKVLEYLESGVDINASNA------------------NGLNALHL 115

Query: 160 AAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAAL 195
           AAKDGH  +V+ LL  G  VDA+TKKGNTALHIA+L
Sbjct: 116 AAKDGHLEIVRELLNRGAVVDAATKKGNTALHIASL 151

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350425715|ref|XP_003494210.1| PREDICTED: hypothetical protein LOC100742486, partial [Bombus impatiens]

 Score =  109 bits (273), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 58/96 (60%), Positives = 67/96 (69%), Gaps = 18/96 (18%)

Query: 100 SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHL 159
           SDP+T+FLRAARAG L+K+ E LE+GVDIN SNA                  NGLNALHL
Sbjct: 74  SDPSTAFLRAARAGQLEKVLEYLESGVDINASNA------------------NGLNALHL 115

Query: 160 AAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAAL 195
           AAKDGH  +V+ LL  G  VDA+TKKGNTALHIA+L
Sbjct: 116 AAKDGHLEIVRELLNRGAVVDAATKKGNTALHIASL 151

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332022332|gb|EGI62644.1| Ankyrin-2 [Acromyrmex echinatior]

 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 57/95 (60%), Positives = 66/95 (69%), Gaps = 18/95 (18%)

Query: 101 DPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLA 160
           DP+T+FLRAARAG L+K+ E LE+GVDIN SNA                  NGLNALHLA
Sbjct: 1   DPSTAFLRAARAGQLEKVLEYLESGVDINASNA------------------NGLNALHLA 42

Query: 161 AKDGHTTVVKALLKGGCKVDASTKKGNTALHIAAL 195
           AKDGH  +V+ LL  G  VDA+TKKGNTALHIA+L
Sbjct: 43  AKDGHLEIVRELLNRGAIVDAATKKGNTALHIASL 77

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270004596|gb|EFA01044.1| hypothetical protein TcasGA2_TC003960 [Tribolium castaneum]

 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 56/96 (58%), Positives = 66/96 (68%), Gaps = 18/96 (18%)

Query: 100 SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHL 159
           +D NTSFLRAAR G L+K+ E LE+ +DINTSNA                  NGLNALHL
Sbjct: 169 TDGNTSFLRAARNGQLEKVLEHLESNIDINTSNA------------------NGLNALHL 210

Query: 160 AAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAAL 195
           A+KDGH  +VK LLK G  +DA+TKKGNTALHIA+L
Sbjct: 211 ASKDGHVEIVKELLKRGAVIDAATKKGNTALHIASL 246

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322778809|gb|EFZ09225.1| hypothetical protein SINV_06859 [Solenopsis invicta]

 Score =  107 bits (266), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 58/96 (60%), Positives = 67/96 (69%), Gaps = 18/96 (18%)

Query: 100 SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHL 159
           SDP+T+FLRAARAG L+K+ E LE+GVDIN SNA                  NGLNALHL
Sbjct: 2   SDPSTAFLRAARAGQLEKVLEYLESGVDINASNA------------------NGLNALHL 43

Query: 160 AAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAAL 195
           AAKDGH  +V+ LL  G  VDA+TKKGNTALHIA+L
Sbjct: 44  AAKDGHLEIVRKLLNRGAIVDAATKKGNTALHIASL 79

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383847150|ref|XP_003699218.1| PREDICTED: ankyrin-2 [Megachile rotundata]

 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/96 (60%), Positives = 67/96 (69%), Gaps = 18/96 (18%)

Query: 100 SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHL 159
           SDP+T+FLRAARAG L+K+ E LE+GVDIN SNA                  NGLNALHL
Sbjct: 20  SDPSTAFLRAARAGQLEKVLEHLESGVDINASNA------------------NGLNALHL 61

Query: 160 AAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAAL 195
           AAKDGH  +V+ LL  G  VDA+TKKGNTALHIA+L
Sbjct: 62  AAKDGHLEIVRELLNRGAVVDAATKKGNTALHIASL 97

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189235752|ref|XP_001807645.1| PREDICTED: similar to ankyrin 2,3/unc44 [Tribolium castaneum]

 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 57/98 (58%), Positives = 67/98 (68%), Gaps = 20/98 (20%)

Query: 100 SDPNTSFLRAARAGHLDKLRELLEAGV--DINTSNATSKKLDNQLNIHQKNIKNNGLNAL 157
           +DPNT+FLRAARA  LDK++E L++G   DINTSNA                  NGLNAL
Sbjct: 36  TDPNTAFLRAARANQLDKIQEYLDSGTVRDINTSNA------------------NGLNAL 77

Query: 158 HLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAAL 195
           HLAAKDGH  + + LLK G  VDA+TKKGNTALHIA+L
Sbjct: 78  HLAAKDGHVEIARELLKRGAIVDAATKKGNTALHIASL 115

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189235951|ref|XP_001809144.1| PREDICTED: similar to ankyrin 2,3/unc44 [Tribolium castaneum]

 Score =  103 bits (256), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 56/102 (54%), Positives = 68/102 (66%), Gaps = 18/102 (17%)

Query: 94  INTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNG 153
           +  +  +D NTSFLRAAR G L+K+ E LE+ +DINTSNA                  NG
Sbjct: 2   VTENGQTDGNTSFLRAARNGQLEKVLEHLESNIDINTSNA------------------NG 43

Query: 154 LNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAAL 195
           LNALHLA+KDGH  +VK LLK G  +DA+TKKGNTALHIA+L
Sbjct: 44  LNALHLASKDGHVEIVKELLKRGAVIDAATKKGNTALHIASL 85

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	225
UNIPROTKB|F1NG08	3694	Gga.53822 "Uncharacterized pro	0.564	0.034	0.398	6.9e-15
UNIPROTKB|J9NTH2	2063	ANK2 "Uncharacterized protein"	0.568	0.062	0.388	1.6e-14
UNIPROTKB|I6L894	3924	ANK2 "Ankyrin-2" [Homo sapiens	0.564	0.032	0.391	2.7e-14
UNIPROTKB|Q01484	3957	ANK2 "Ankyrin-2" [Homo sapiens	0.564	0.032	0.391	2.7e-14
ZFIN|ZDB-GENE-041010-165	3538	ank2b "ankyrin 2b, neuronal" [	0.564	0.035	0.419	2.8e-14
UNIPROTKB|F1M5N3	3838	Ank2 "Protein Ank2" [Rattus no	0.564	0.033	0.391	5.1e-14
UNIPROTKB|F1S146	3896	ANK2 "Uncharacterized protein"	0.564	0.032	0.391	5.1e-14
MGI|MGI:88025	3898	Ank2 "ankyrin 2, brain" [Mus m	0.564	0.032	0.391	5.1e-14
UNIPROTKB|F1M9N9	3898	Ank2 "Protein Ank2" [Rattus no	0.564	0.032	0.391	5.1e-14
UNIPROTKB|F1LM42	3927	Ank2 "Protein Ank2" [Rattus no	0.564	0.032	0.391	5.2e-14

UNIPROTKB|F1NG08 Gga.53822 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 208 (78.3 bits), Expect = 6.9e-15, P = 6.9e-15
 Identities = 57/143 (39%), Positives = 79/143 (55%)

Query:    66 SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG 125
             SD N SFLRAARAG+LDK+ E L++G+DINT N +  N   L AA+ GH+  ++ELLE G
Sbjct:     5 SDSNASFLRAARAGNLDKVVEYLKSGIDINTCNQNGLNALHL-AAKEGHVGLVQELLERG 63

Query:   126 --VDINTSNATSK----KLDNQLNIHQKNIKN---------NGLNALHLAAKDGHTTVVK 170
               VD  T    +      L  Q  + +  +K          NG   L++AA++ H  VVK
Sbjct:    64 SAVDSATKKGNTALHIASLAGQAEVVKVLVKEGANINAQSQNGFTPLYMAAQENHIEVVK 123

Query:   171 ALLKGGCKVDASTKKGNTALHIA 193
              LL+ G     +T+ G T L +A
Sbjct:   124 YLLENGANQSTATEDGFTPLAVA 146

GO:0003283 "atrial septum development" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0006874 "cellular calcium ion homeostasis" evidence=IEA

GO:0010628 "positive regulation of gene expression" evidence=IEA

GO:0010881 "regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion" evidence=IEA

GO:0014704 "intercalated disc" evidence=IEA

GO:0015459 "potassium channel regulator activity" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0030018 "Z disc" evidence=IEA

GO:0030315 "T-tubule" evidence=IEA

GO:0030507 "spectrin binding" evidence=IEA

GO:0030674 "protein binding, bridging" evidence=IEA

GO:0031430 "M band" evidence=IEA

GO:0033292 "T-tubule organization" evidence=IEA

GO:0034394 "protein localization to cell surface" evidence=IEA

GO:0043034 "costamere" evidence=IEA

GO:0043268 "positive regulation of potassium ion transport" evidence=IEA

GO:0044325 "ion channel binding" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0050821 "protein stabilization" evidence=IEA

GO:0051117 "ATPase binding" evidence=IEA

GO:0051928 "positive regulation of calcium ion transport" evidence=IEA

GO:0060048 "cardiac muscle contraction" evidence=IEA

GO:0060307 "regulation of ventricular cardiac muscle cell membrane repolarization" evidence=IEA

GO:0070972 "protein localization to endoplasmic reticulum" evidence=IEA

GO:0072661 "protein targeting to plasma membrane" evidence=IEA

GO:0086005 "regulation of ventricular cardiac muscle cell action potential" evidence=IEA

GO:0086014 "regulation of atrial cardiac muscle cell action potential" evidence=IEA

GO:0086015 "regulation of SA node cell action potential" evidence=IEA

GO:0086091 "regulation of heart rate by cardiac conduction" evidence=IEA

GO:1901018 "positive regulation of potassium ion transmembrane transporter activity" evidence=IEA

GO:1901021 "positive regulation of calcium ion transmembrane transporter activity" evidence=IEA

GO:2001259 "positive regulation of cation channel activity" evidence=IEA

UNIPROTKB|J9NTH2 ANK2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 202 (76.2 bits), Expect = 1.6e-14, P = 1.6e-14
 Identities = 56/144 (38%), Positives = 78/144 (54%)

Query:    65 YSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEA 124
             +SD N SFLRAARAG+LDK+ E L+ G+DINT N +  N   L AA+ GH+  ++ELL  
Sbjct:    45 WSDSNASFLRAARAGNLDKVVEYLKGGIDINTCNQNGLNALHL-AAKEGHVGLVQELLGR 103

Query:   125 G--VDINTSNATSK----KLDNQLNIHQKNIKN---------NGLNALHLAAKDGHTTVV 169
             G  VD  T    +      L  Q  + +  +K          NG   L++AA++ H  VV
Sbjct:   104 GSSVDSATKKGNTALHIASLAGQAEVVKVLVKEGANINAQSQNGFTPLYMAAQENHIDVV 163

Query:   170 KALLKGGCKVDASTKKGNTALHIA 193
             K LL+ G     +T+ G T L +A
Sbjct:   164 KYLLENGANQSTATEDGFTPLAVA 187

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|I6L894 ANK2 "Ankyrin-2" [Homo sapiens (taxid:9606)]

 Score = 200 (75.5 bits), Expect = 2.7e-14, Sum P(2) = 2.7e-14
 Identities = 56/143 (39%), Positives = 77/143 (53%)

Query:    66 SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG 125
             SD N SFLRAARAG+LDK+ E L+ G+DINT N +  N   L AA+ GH+  ++ELL  G
Sbjct:    29 SDSNASFLRAARAGNLDKVVEYLKGGIDINTCNQNGLNALHL-AAKEGHVGLVQELLGRG 87

Query:   126 --VDINTSNATSK----KLDNQLNIHQKNIKN---------NGLNALHLAAKDGHTTVVK 170
               VD  T    +      L  Q  + +  +K          NG   L++AA++ H  VVK
Sbjct:    88 SSVDSATKKGNTALHIASLAGQAEVVKVLVKEGANINAQSQNGFTPLYMAAQENHIDVVK 147

Query:   171 ALLKGGCKVDASTKKGNTALHIA 193
              LL+ G     +T+ G T L +A
Sbjct:   148 YLLENGANQSTATEDGFTPLAVA 170

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|Q01484 ANK2 "Ankyrin-2" [Homo sapiens (taxid:9606)]

 Score = 200 (75.5 bits), Expect = 2.7e-14, Sum P(2) = 2.7e-14
 Identities = 56/143 (39%), Positives = 77/143 (53%)

Query:    66 SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG 125
             SD N SFLRAARAG+LDK+ E L+ G+DINT N +  N   L AA+ GH+  ++ELL  G
Sbjct:    29 SDSNASFLRAARAGNLDKVVEYLKGGIDINTCNQNGLNALHL-AAKEGHVGLVQELLGRG 87

Query:   126 --VDINTSNATSK----KLDNQLNIHQKNIKN---------NGLNALHLAAKDGHTTVVK 170
               VD  T    +      L  Q  + +  +K          NG   L++AA++ H  VVK
Sbjct:    88 SSVDSATKKGNTALHIASLAGQAEVVKVLVKEGANINAQSQNGFTPLYMAAQENHIDVVK 147

Query:   171 ALLKGGCKVDASTKKGNTALHIA 193
              LL+ G     +T+ G T L +A
Sbjct:   148 YLLENGANQSTATEDGFTPLAVA 170

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0015459 "potassium channel regulator activity" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0060048 "cardiac muscle contraction" evidence=IEA

GO:0072661 "protein targeting to plasma membrane" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0019899 "enzyme binding" evidence=IPI

GO:0005829 "cytosol" evidence=TAS

GO:0007411 "axon guidance" evidence=TAS

GO:0086091 "regulation of heart rate by cardiac conduction" evidence=ISS;IMP

GO:0031672 "A band" evidence=ISS

GO:0055117 "regulation of cardiac muscle contraction" evidence=IMP

GO:0070972 "protein localization to endoplasmic reticulum" evidence=IGI

GO:0051924 "regulation of calcium ion transport" evidence=IGI

GO:0010882 "regulation of cardiac muscle contraction by calcium ion signaling" evidence=IMP

GO:0086070 "SA node cell to atrial cardiac muscle cell communication" evidence=IMP

GO:0033292 "T-tubule organization" evidence=ISS

GO:0034394 "protein localization to cell surface" evidence=ISS

GO:0086066 "atrial cardiac muscle cell to AV node cell communication" evidence=ISS

GO:0030674 "protein binding, bridging" evidence=ISS

GO:0044325 "ion channel binding" evidence=ISS;IPI

GO:0051117 "ATPase binding" evidence=ISS

GO:0014704 "intercalated disc" evidence=ISS

GO:0030315 "T-tubule" evidence=ISS

GO:0031430 "M band" evidence=ISS

GO:0042383 "sarcolemma" evidence=ISS

GO:0043034 "costamere" evidence=ISS

GO:0033365 "protein localization to organelle" evidence=IGI

GO:0086014 "regulation of atrial cardiac muscle cell action potential" evidence=IMP

GO:0010881 "regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion" evidence=IGI;ISS

GO:1901019 "regulation of calcium ion transmembrane transporter activity" evidence=ISS

GO:0072659 "protein localization to plasma membrane" evidence=IGI;ISS

GO:0030018 "Z disc" evidence=ISS

GO:1901018 "positive regulation of potassium ion transmembrane transporter activity" evidence=ISS

GO:0043268 "positive regulation of potassium ion transport" evidence=ISS

GO:2001259 "positive regulation of cation channel activity" evidence=ISS

GO:0086005 "regulation of ventricular cardiac muscle cell action potential" evidence=IMP

GO:0051279 "regulation of release of sequestered calcium ion into cytosol" evidence=IGI

GO:0086004 "regulation of cardiac muscle cell contraction" evidence=IGI

GO:0034613 "cellular protein localization" evidence=IGI

GO:0010628 "positive regulation of gene expression" evidence=IGI

GO:0060307 "regulation of ventricular cardiac muscle cell membrane repolarization" evidence=IMP

GO:0003283 "atrial septum development" evidence=IMP

GO:0002027 "regulation of heart rate" evidence=IMP

GO:0031647 "regulation of protein stability" evidence=IC

GO:1901021 "positive regulation of calcium ion transmembrane transporter activity" evidence=ISS

GO:0006874 "cellular calcium ion homeostasis" evidence=ISS

GO:0051928 "positive regulation of calcium ion transport" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0086015 "regulation of SA node cell action potential" evidence=ISS

GO:0070296 "sarcoplasmic reticulum calcium ion transport" evidence=TAS

GO:0086046 "membrane depolarization involved in regulation of SA node cell action potential" evidence=TAS

GO:0019901 "protein kinase binding" evidence=IPI

GO:0005622 "intracellular" evidence=IGI

GO:0050821 "protein stabilization" evidence=ISS

GO:0030507 "spectrin binding" evidence=IPI

ZFIN|ZDB-GENE-041010-165 ank2b "ankyrin 2b, neuronal" [Danio rerio (taxid:7955)]

 Score = 202 (76.2 bits), Expect = 2.8e-14, P = 2.8e-14
 Identities = 60/143 (41%), Positives = 80/143 (55%)

Query:    66 SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG 125
             SD NTSFLRAARAG++DK+ E L+ GVDI TSN +  N   L AA+ GH+D ++ELL  G
Sbjct:    30 SDSNTSFLRAARAGNIDKVLEYLKGGVDIGTSNQNGLNALHL-AAKEGHVDLVQELLGRG 88

Query:   126 --VDINTSNATSK----KLDNQ---LNIHQK---NIK---NNGLNALHLAAKDGHTTVVK 170
               VD  T    +      L  Q   + I  K   NI     NG   L++A+++ H  VV+
Sbjct:    89 SSVDSATKKGNTALHIASLAGQGDVVKILSKRGANINAQSQNGFTPLYMASQENHLDVVR 148

Query:   171 ALLKGGCKVDASTKKGNTALHIA 193
              LL+ G     +T+ G T L IA
Sbjct:   149 YLLENGGNQSIATEDGFTPLAIA 171

GO:0006508 "proteolysis" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|F1M5N3 Ank2 "Protein Ank2" [Rattus norvegicus (taxid:10116)]

 Score = 200 (75.5 bits), Expect = 5.1e-14, P = 5.1e-14
 Identities = 56/143 (39%), Positives = 77/143 (53%)

Query:    66 SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG 125
             SD N SFLRAARAG+LDK+ E L+ G+DINT N +  N   L AA+ GH+  ++ELL  G
Sbjct:     7 SDSNASFLRAARAGNLDKVVEYLKGGIDINTCNQNGLNALHL-AAKEGHVGLVQELLGRG 65

Query:   126 --VDINTSNATSK----KLDNQLNIHQKNIKN---------NGLNALHLAAKDGHTTVVK 170
               VD  T    +      L  Q  + +  +K          NG   L++AA++ H  VVK
Sbjct:    66 SSVDSATKKGNTALHIASLAGQAEVVKVLVKEGANINAQSQNGFTPLYMAAQENHIDVVK 125

Query:   171 ALLKGGCKVDASTKKGNTALHIA 193
              LL+ G     +T+ G T L +A
Sbjct:   126 YLLENGANQSTATEDGFTPLAVA 148

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F1S146 ANK2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 200 (75.5 bits), Expect = 5.1e-14, P = 5.1e-14
 Identities = 56/143 (39%), Positives = 77/143 (53%)

Query:    66 SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG 125
             SD N SFLRAARAG+LDK+ E L+ G+DINT N +  N   L AA+ GH+  ++ELL  G
Sbjct:     7 SDSNASFLRAARAGNLDKVVEYLKGGIDINTCNQNGLNALHL-AAKEGHVGLVQELLGRG 65

Query:   126 --VDINTSNATSK----KLDNQLNIHQKNIKN---------NGLNALHLAAKDGHTTVVK 170
               VD  T    +      L  Q  + +  +K          NG   L++AA++ H  VVK
Sbjct:    66 SSVDSATKKGNTALHIASLAGQAEVVKVLVKEGANINAQSQNGFTPLYMAAQENHIDVVK 125

Query:   171 ALLKGGCKVDASTKKGNTALHIA 193
              LL+ G     +T+ G T L +A
Sbjct:   126 YLLENGANQSTATEDGFTPLAVA 148

GO:2001259 "positive regulation of cation channel activity" evidence=IEA

GO:1901021 "positive regulation of calcium ion transmembrane transporter activity" evidence=IEA

GO:1901018 "positive regulation of potassium ion transmembrane transporter activity" evidence=IEA

GO:0086091 "regulation of heart rate by cardiac conduction" evidence=IEA

GO:0086015 "regulation of SA node cell action potential" evidence=IEA

GO:0086014 "regulation of atrial cardiac muscle cell action potential" evidence=IEA

GO:0086005 "regulation of ventricular cardiac muscle cell action potential" evidence=IEA

GO:0072661 "protein targeting to plasma membrane" evidence=IEA

GO:0070972 "protein localization to endoplasmic reticulum" evidence=IEA

GO:0060307 "regulation of ventricular cardiac muscle cell membrane repolarization" evidence=IEA

GO:0060048 "cardiac muscle contraction" evidence=IEA

GO:0051928 "positive regulation of calcium ion transport" evidence=IEA

GO:0051117 "ATPase binding" evidence=IEA

GO:0050821 "protein stabilization" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0044325 "ion channel binding" evidence=IEA

GO:0043268 "positive regulation of potassium ion transport" evidence=IEA

GO:0043034 "costamere" evidence=IEA

GO:0034394 "protein localization to cell surface" evidence=IEA

GO:0033292 "T-tubule organization" evidence=IEA

GO:0031430 "M band" evidence=IEA

GO:0030674 "protein binding, bridging" evidence=IEA

GO:0030507 "spectrin binding" evidence=IEA

GO:0030315 "T-tubule" evidence=IEA

GO:0030018 "Z disc" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=IEA

GO:0015459 "potassium channel regulator activity" evidence=IEA

GO:0014704 "intercalated disc" evidence=IEA

GO:0010881 "regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion" evidence=IEA

GO:0010628 "positive regulation of gene expression" evidence=IEA

GO:0006874 "cellular calcium ion homeostasis" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0003283 "atrial septum development" evidence=IEA

MGI|MGI:88025 Ank2 "ankyrin 2, brain" [Mus musculus (taxid:10090)]

 Score = 200 (75.5 bits), Expect = 5.1e-14, P = 5.1e-14
 Identities = 56/143 (39%), Positives = 77/143 (53%)

Query:    66 SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG 125
             SD N SFLRAARAG+LDK+ E L+ G+DINT N +  N   L AA+ GH+  ++ELL  G
Sbjct:    29 SDSNASFLRAARAGNLDKVVEYLKGGIDINTCNQNGLNALHL-AAKEGHVGLVQELLGRG 87

Query:   126 --VDINTSNATSK----KLDNQLNIHQKNIKN---------NGLNALHLAAKDGHTTVVK 170
               VD  T    +      L  Q  + +  +K          NG   L++AA++ H  VVK
Sbjct:    88 SSVDSATKKGNTALHIASLAGQAEVVKVLVKEGANINAQSQNGFTPLYMAAQENHIDVVK 147

Query:   171 ALLKGGCKVDASTKKGNTALHIA 193
              LL+ G     +T+ G T L +A
Sbjct:   148 YLLENGANQSTATEDGFTPLAVA 170

GO:0002027 "regulation of heart rate" evidence=ISO;IMP

GO:0003283 "atrial septum development" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005622 "intracellular" evidence=ISO;IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005886 "plasma membrane" evidence=IMP;IDA

GO:0005887 "integral to plasma membrane" evidence=IDA

GO:0006874 "cellular calcium ion homeostasis" evidence=IMP

GO:0006915 "apoptotic process" evidence=RCA

GO:0007165 "signal transduction" evidence=IEA

GO:0008104 "protein localization" evidence=IMP

GO:0010628 "positive regulation of gene expression" evidence=ISO;IMP

GO:0010881 "regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion" evidence=ISO;IC;IMP

GO:0010882 "regulation of cardiac muscle contraction by calcium ion signaling" evidence=ISO;IMP

GO:0014704 "intercalated disc" evidence=IDA

GO:0015459 "potassium channel regulator activity" evidence=IMP

GO:0016020 "membrane" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=ISO

GO:0019899 "enzyme binding" evidence=ISO

GO:0019901 "protein kinase binding" evidence=ISO

GO:0030018 "Z disc" evidence=IDA

GO:0030054 "cell junction" evidence=IEA

GO:0030315 "T-tubule" evidence=IDA

GO:0030507 "spectrin binding" evidence=ISO

GO:0030674 "protein binding, bridging" evidence=IMP;IDA

GO:0031430 "M band" evidence=IMP;IDA

GO:0031647 "regulation of protein stability" evidence=IC

GO:0031672 "A band" evidence=IDA

GO:0033292 "T-tubule organization" evidence=IMP

GO:0033365 "protein localization to organelle" evidence=ISO

GO:0034394 "protein localization to cell surface" evidence=IMP

GO:0034613 "cellular protein localization" evidence=ISO;IDA;IMP

GO:0042383 "sarcolemma" evidence=IMP;IDA

GO:0042981 "regulation of apoptotic process" evidence=RCA

GO:0043034 "costamere" evidence=IDA

GO:0043268 "positive regulation of potassium ion transport" evidence=IMP

GO:0044325 "ion channel binding" evidence=ISO;IPI

GO:0045202 "synapse" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0050821 "protein stabilization" evidence=IMP

GO:0051117 "ATPase binding" evidence=IPI

GO:0051279 "regulation of release of sequestered calcium ion into cytosol" evidence=ISO

GO:0051924 "regulation of calcium ion transport" evidence=ISO;IMP

GO:0051928 "positive regulation of calcium ion transport" evidence=IMP

GO:0055117 "regulation of cardiac muscle contraction" evidence=ISO;IMP

GO:0060048 "cardiac muscle contraction" evidence=IMP

GO:0060307 "regulation of ventricular cardiac muscle cell membrane repolarization" evidence=ISO

GO:0070972 "protein localization to endoplasmic reticulum" evidence=ISO;IMP

GO:0072659 "protein localization to plasma membrane" evidence=ISO;IMP

GO:0072661 "protein targeting to plasma membrane" evidence=IGI;IMP

GO:0086004 "regulation of cardiac muscle cell contraction" evidence=ISO;IMP

GO:0086005 "regulation of ventricular cardiac muscle cell action potential" evidence=ISO

GO:0086014 "regulation of atrial cardiac muscle cell action potential" evidence=ISO;IMP

GO:0086015 "regulation of SA node cell action potential" evidence=IMP

GO:0086036 "regulation of cardiac muscle cell membrane potential" evidence=IGI;IMP

GO:0086066 "atrial cardiac muscle cell to AV node cell communication" evidence=IMP

GO:0086070 "SA node cell to atrial cardiac muscle cell communication" evidence=ISO;IMP

GO:0086091 "regulation of heart rate by cardiac conduction" evidence=ISO;IMP

GO:1901018 "positive regulation of potassium ion transmembrane transporter activity" evidence=IMP

GO:1901019 "regulation of calcium ion transmembrane transporter activity" evidence=IMP

GO:1901021 "positive regulation of calcium ion transmembrane transporter activity" evidence=IMP

GO:2001257 "regulation of cation channel activity" evidence=IMP

GO:2001259 "positive regulation of cation channel activity" evidence=IMP

UNIPROTKB|F1M9N9 Ank2 "Protein Ank2" [Rattus norvegicus (taxid:10116)]

 Score = 200 (75.5 bits), Expect = 5.1e-14, P = 5.1e-14
 Identities = 56/143 (39%), Positives = 77/143 (53%)

Query:    66 SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG 125
             SD N SFLRAARAG+LDK+ E L+ G+DINT N +  N   L AA+ GH+  ++ELL  G
Sbjct:     2 SDSNASFLRAARAGNLDKVVEYLKGGIDINTCNQNGLNALHL-AAKEGHVGLVQELLGRG 60

Query:   126 --VDINTSNATSK----KLDNQLNIHQKNIKN---------NGLNALHLAAKDGHTTVVK 170
               VD  T    +      L  Q  + +  +K          NG   L++AA++ H  VVK
Sbjct:    61 SSVDSATKKGNTALHIASLAGQAEVVKVLVKEGANINAQSQNGFTPLYMAAQENHIDVVK 120

Query:   171 ALLKGGCKVDASTKKGNTALHIA 193
              LL+ G     +T+ G T L +A
Sbjct:   121 YLLENGANQSTATEDGFTPLAVA 143

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F1LM42 Ank2 "Protein Ank2" [Rattus norvegicus (taxid:10116)]

 Score = 200 (75.5 bits), Expect = 5.2e-14, P = 5.2e-14
 Identities = 56/143 (39%), Positives = 77/143 (53%)

Query:    66 SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG 125
             SD N SFLRAARAG+LDK+ E L+ G+DINT N +  N   L AA+ GH+  ++ELL  G
Sbjct:     2 SDSNASFLRAARAGNLDKVVEYLKGGIDINTCNQNGLNALHL-AAKEGHVGLVQELLGRG 60

Query:   126 --VDINTSNATSK----KLDNQLNIHQKNIKN---------NGLNALHLAAKDGHTTVVK 170
               VD  T    +      L  Q  + +  +K          NG   L++AA++ H  VVK
Sbjct:    61 SSVDSATKKGNTALHIASLAGQAEVVKVLVKEGANINAQSQNGFTPLYMAAQENHIDVVK 120

Query:   171 ALLKGGCKVDASTKKGNTALHIA 193
              LL+ G     +T+ G T L +A
Sbjct:   121 YLLENGANQSTATEDGFTPLAVA 143

GO:0007165 "signal transduction" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IPI

GO:0044325 "ion channel binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	225
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-20
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-14
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-13
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	4e-10
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	6e-08
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	1e-07
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	3e-07
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	6e-07
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	1e-06
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-06
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	4e-06
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	5e-06
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	1e-05
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	2e-05
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	2e-05
pfam00023	33	pfam00023, Ank, Ankyrin repeat	3e-05
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	4e-05
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	1e-04
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	1e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	4e-04
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	5e-04
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	6e-04
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	0.001
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	0.002
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	0.004

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 83.2 bits (206), Expect = 2e-20
 Identities = 47/126 (37%), Positives = 64/126 (50%), Gaps = 19/126 (15%)

Query: 69  NTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDI 128
            T    AA  GHL+ ++ LLE G D+N  +     T    AA+ GHL+ ++ LLE G D+
Sbjct: 8   RTPLHLAASNGHLEVVKLLLENGADVNAKDNDG-RTPLHLAAKNGHLEIVKLLLEKGADV 66

Query: 129 NTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNT 188
           N  +                   +G   LHLAA++G+  VVK LLK G  V+A  K G T
Sbjct: 67  NARD------------------KDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRT 108

Query: 189 ALHIAA 194
            LH+AA
Sbjct: 109 PLHLAA 114

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 65.7 bits (161), Expect = 3e-14
 Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 21/110 (19%)

Query: 72  FLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTS 131
              AA+ G+L+ ++ LLE G D+N  +          AAR G+L+ ++ LLE G D+N  
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTDTA---LHLAARNGNLEIVKLLLEHGADVNAK 57

Query: 132 NATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDA 181
           +                   +G  ALHLAA++G+  +VK LL+ G  ++ 
Sbjct: 58  D------------------KDGNTALHLAARNGNLEIVKLLLEHGADINL 89

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 63.4 bits (155), Expect = 2e-13
 Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 20/89 (22%)

Query: 106 FLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGH 165
              AA+ G+L+ ++ LLE G D+N  +  +                    ALHLAA++G+
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTDT--------------------ALHLAARNGN 40

Query: 166 TTVVKALLKGGCKVDASTKKGNTALHIAA 194
             +VK LL+ G  V+A  K GNTALH+AA
Sbjct: 41  LEIVKLLLEHGADVNAKDKDGNTALHLAA 69

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 55.5 bits (134), Expect = 4e-10
 Identities = 22/44 (50%), Positives = 27/44 (61%)

Query: 151 NNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
            +G   LHLAA +GH  VVK LL+ G  V+A    G T LH+AA
Sbjct: 5   EDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAA 48

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 48.4 bits (116), Expect = 6e-08
 Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 1/58 (1%)

Query: 75  AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSN 132
           AAR G+L+ ++ LLE G D+N  +    NT+   AAR G+L+ ++ LLE G DIN  +
Sbjct: 35  AARNGNLEIVKLLLEHGADVNAKDKDG-NTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 51.4 bits (123), Expect = 1e-07
 Identities = 46/165 (27%), Positives = 71/165 (43%), Gaps = 17/165 (10%)

Query: 67  DPNTSF--LRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEA 124
           DPN +   L  A  G+   L ELL+A +D +  ++    T    AA  G+ D +  LL+ 
Sbjct: 522 DPNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKG-RTPLHIAASKGYEDCVLVLLKH 580

Query: 125 GVDINTS---------NATSKKLDNQLNI--HQKNIKN--NGLNALHLAAKDGHTTVVKA 171
             +++           NA S K      I  H  +I +     + L  AAK    T +K 
Sbjct: 581 ACNVHIRDANGNTALWNAISAKHHKIFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKE 640

Query: 172 LLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAITDATSLPCS 216
           LLK G  VD+   +G TAL +A  +  V D+    I +   +  +
Sbjct: 641 LLKQGLNVDSEDHQGATALQVAMAEDHV-DMVRLLIMNGADVDKA 684

Length = 823

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 45.7 bits (109), Expect = 3e-07
 Identities = 21/43 (48%), Positives = 27/43 (62%)

Query: 153 GLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAAL 195
           G  ALH AA  G   +VK LL+ G  ++ + + GNTALHIAA 
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAE 43

Length = 54

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 48.3 bits (114), Expect = 6e-07
 Identities = 38/140 (27%), Positives = 60/140 (42%), Gaps = 21/140 (15%)

Query: 66  SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHL-----DKLRE 120
            D       AA  G    ++ LL +G D+N  +A D +T    AA  G+      +  + 
Sbjct: 71  LDGRLPLHSAASKGDDKIVKLLLASGADVNAKDA-DGDTPLHLAALNGNPPEGNIEVAKL 129

Query: 121 LLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVD 180
           LLEAG D++ +N   +               +G   LH AA +G   +V+ LL+ G   +
Sbjct: 130 LLEAGADLDVNNLRDE---------------DGNTPLHWAALNGDADIVELLLEAGADPN 174

Query: 181 ASTKKGNTALHIAALDSLVT 200
           +    G TAL  AA +  + 
Sbjct: 175 SRNSYGVTALDPAAKNGRIE 194

Length = 235

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 44.3 bits (105), Expect = 1e-06
 Identities = 19/43 (44%), Positives = 24/43 (55%)

Query: 151 NNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIA 193
            NG   LHLAAK G   +V+ LLK G  ++     G TAL +A
Sbjct: 14  GNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 43.4 bits (103), Expect = 2e-06
 Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 1/54 (1%)

Query: 69  NTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELL 122
            T+  +AA +G L+ ++ LLE GVDIN ++    NT+   AA  G+L+ L+ LL
Sbjct: 2   RTALHKAAISGRLELVKYLLEKGVDINRTDEDG-NTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 42.6 bits (101), Expect = 4e-06
 Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 18/71 (25%)

Query: 103 NTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAK 162
            T+  +AA +G L+ ++ LLE GVDIN ++                   +G  ALH+AA+
Sbjct: 2   RTALHKAAISGRLELVKYLLEKGVDINRTD------------------EDGNTALHIAAE 43

Query: 163 DGHTTVVKALL 173
           +G+  V+K LL
Sbjct: 44  NGNLEVLKLLL 54

Length = 54

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 46.4 bits (110), Expect = 5e-06
 Identities = 30/98 (30%), Positives = 39/98 (39%), Gaps = 20/98 (20%)

Query: 95  NTSNASDPNTSF--LRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNN 152
           N     DPN +   L  A  G+   L ELL+A +D +  ++                   
Sbjct: 516 NGGEHDDPNMASNLLTVASTGNAALLEELLKAKLDPDIGDSK------------------ 557

Query: 153 GLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTAL 190
           G   LH+AA  G+   V  LLK  C V      GNTAL
Sbjct: 558 GRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTAL 595

Length = 823

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 35/119 (29%), Positives = 53/119 (44%), Gaps = 5/119 (4%)

Query: 79  GHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDK--LRELLEAGVDINTSNATSK 136
                +  LL+ G ++N  N SD          +  +D   L+ L++ GVDIN  N  + 
Sbjct: 119 NSYSIVEYLLDNGANVNIKN-SDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRVNY 177

Query: 137 KLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAAL 195
            L   + I+ K++       LH A  + +   VK LL  G   +   K G+T LHIA L
Sbjct: 178 LLSYGVPINIKDVYGF--TPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAIL 234

Length = 422

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 28/111 (25%), Positives = 40/111 (36%), Gaps = 21/111 (18%)

Query: 82  DKLRELLEAGVDINTSNASDPNTSFLRAARAGHLD--KLRELLEAGVDINTSNATSKKLD 139
             +REL+ AG D   ++    NT     A         +  LL AG+ IN  N       
Sbjct: 203 RIVRELIRAGCDPAATDMLG-NTPLHSMATGSSCKRSLVLPLLIAGISINARN------- 254

Query: 140 NQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTAL 190
                        G   LH AA   +    + L+  G  ++A +  GNT L
Sbjct: 255 -----------RYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPL 294

Length = 471

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 44.2 bits (104), Expect = 2e-05
 Identities = 36/129 (27%), Positives = 54/129 (41%), Gaps = 6/129 (4%)

Query: 70  TSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDIN 129
           T  + A R+G    +   ++ G DIN  N   P+   L A + G  D ++ L++ GVD +
Sbjct: 37  TPLIDAIRSGDAKIVELFIKHGADINHINTKIPH-PLLTAIKIGAHDIIKLLIDNGVDTS 95

Query: 130 TSNATSKKLDNQLNIHQKNIKNNGLNA-----LHLAAKDGHTTVVKALLKGGCKVDASTK 184
                  + D    I    I  N  +A     LH A K G    +K L + G  V+    
Sbjct: 96  ILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDD 155

Query: 185 KGNTALHIA 193
            G   +HIA
Sbjct: 156 NGCYPIHIA 164

Length = 434

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 39.8 bits (94), Expect = 3e-05
 Identities = 17/33 (51%), Positives = 22/33 (66%)

Query: 152 NGLNALHLAAKDGHTTVVKALLKGGCKVDASTK 184
           +G   LHLAA++GH  VVK LL+ G  V+A  K
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 33/129 (25%), Positives = 51/129 (39%), Gaps = 20/129 (15%)

Query: 66  SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG 125
             P   +L  +     D +R LLEAG D+N           L    A  LD ++ L++AG
Sbjct: 48  KTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAG 107

Query: 126 VDINTSNATSKKLDNQLNIHQKNIKNNGLNALH--LAAKDGHTTVVKALLKGGCKVDAST 183
            D+N  +                    G   LH  L+  + +  V++ LL+ G  V+A  
Sbjct: 108 ADVNAKD------------------KVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALD 149

Query: 184 KKGNTALHI 192
             G T L +
Sbjct: 150 LYGMTPLAV 158

Length = 471

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 19/116 (16%)

Query: 84  LRELLEAGVDINTSNASD--PNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQ 141
           +R LL  G D+N  +     P    L++  A +++ LR L++AG D+   +    +  + 
Sbjct: 135 IRLLLRKGADVNALDLYGMTPLAVLLKSRNA-NVELLRLLIDAGADVYAVDD---RFRSL 190

Query: 142 LNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDS 197
           L+ H ++ K                 +V+ L++ GC   A+   GNT LH  A  S
Sbjct: 191 LHHHLQSFKPR-------------ARIVRELIRAGCDPAATDMLGNTPLHSMATGS 233

Length = 471

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 41.9 bits (98), Expect = 1e-04
 Identities = 34/134 (25%), Positives = 57/134 (42%), Gaps = 26/134 (19%)

Query: 82  DKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQ 141
           D ++ +L+ G+D+N  +A +  T    A + G L+ ++ L E G D+N      +  +  
Sbjct: 105 DMIKTILDCGIDVNIKDA-ELKTFLHYAIKKGDLESIKMLFEYGADVNI-----EDDNGC 158

Query: 142 LNIH-------------------QKNIKNNGLNA-LHLAAKDGHTTVVKALLKGGCKVDA 181
             IH                     N+K+N   + LH AA+ G    +K L+  G  +  
Sbjct: 159 YPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMN 218

Query: 182 STKKGNTALHIAAL 195
             K G T LH A +
Sbjct: 219 KCKNGFTPLHNAII 232

Length = 434

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 36.9 bits (86), Expect = 4e-04
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 18/74 (24%)

Query: 87  LLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQ 146
           LLE G     +   + NT    AA+ G L+ ++ LL+ GVD+N  +              
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRD-------------- 46

Query: 147 KNIKNNGLNALHLA 160
               ++GL AL LA
Sbjct: 47  ----SDGLTALDLA 56

Length = 56

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 40.4 bits (94), Expect = 5e-04
 Identities = 37/142 (26%), Positives = 61/142 (42%), Gaps = 17/142 (11%)

Query: 69  NTSFLRAARAGHLDKL-RELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVD 127
           NT    A++A  L +L  +LLE G D+N  N       +L A      + +R L+  G D
Sbjct: 274 NTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGAD 333

Query: 128 INTSNATSKKLDNQLNIHQKN------IKNNGLNA----------LHLAAKDGHTTVVKA 171
           +N ++       +Q +   +N      +   G N           +H AA   +  ++  
Sbjct: 334 VNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINT 393

Query: 172 LLKGGCKVDASTKKGNTALHIA 193
           LL  G  ++A ++K  TALH A
Sbjct: 394 LLDYGADIEALSQKIGTALHFA 415

Length = 682

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 39.9 bits (93), Expect = 6e-04
 Identities = 31/110 (28%), Positives = 43/110 (39%), Gaps = 18/110 (16%)

Query: 84  LRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLN 143
            + LL  G DIN  +    NT+   A           LL  G ++N  + T+        
Sbjct: 150 TKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNN------- 202

Query: 144 IHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIA 193
                      + LH A K  +  +V  LL+ G   DA  K GNT LHI+
Sbjct: 203 -----------SPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHIS 241

Length = 477

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 39.3 bits (91), Expect = 0.001
 Identities = 40/126 (31%), Positives = 61/126 (48%), Gaps = 21/126 (16%)

Query: 71  SFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKL-RELLEAGVDIN 129
           S L+A R   L+    L +AG  +N+ +    NT    A++A  L +L  +LLE G D+N
Sbjct: 243 SLLKAIRNEDLETSLLLYDAGFSVNSIDDCK-NTPLHHASQAPSLSRLVPKLLERGADVN 301

Query: 130 TSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTV-VKALLKGGCKVDASTKKGNT 188
                            KNIK  G   L+L AK+G+ T  ++ L+  G  V+A+ +   T
Sbjct: 302 A----------------KNIK--GETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYIT 343

Query: 189 ALHIAA 194
            LH A+
Sbjct: 344 PLHQAS 349

Length = 682

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 37.5 bits (86), Expect = 0.002
 Identities = 35/101 (34%), Positives = 48/101 (47%), Gaps = 20/101 (19%)

Query: 78  AGHLDKLRELLEAGVDINTSNASDP--NTSFLRAARAGHLDKLRELLEAGVDINTSNATS 135
            G+++  + LLEAG D++ +N  D   NT    AA  G  D +  LLEAG D N+ N   
Sbjct: 121 EGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRN--- 177

Query: 136 KKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGG 176
                          + G+ AL  AAK+G   +VK LL  G
Sbjct: 178 ---------------SYGVTALDPAAKNGRIELVKLLLDKG 203

Length = 235

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 37.3 bits (87), Expect = 0.004
 Identities = 29/123 (23%), Positives = 48/123 (39%), Gaps = 22/123 (17%)

Query: 93  DINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIK-- 150
           D+N  +   P      A  A ++D ++ LL+ G DIN+S   +    + L+  + N+   
Sbjct: 26  DLNDYSYKKPVLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDV 85

Query: 151 ------------------NNGLNALHLAA--KDGHTTVVKALLKGGCKVDASTKKGNTAL 190
                             NNG+  L  A   K    ++V+ LL  G  V+     G   L
Sbjct: 86  KEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLL 145

Query: 191 HIA 193
           H+ 
Sbjct: 146 HLY 148

Length = 422

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	225
KOG4412|consensus	226		99.96
KOG4412|consensus	226		99.96
PHA02791	284	ankyrin-like protein; Provisional	99.94
KOG0509|consensus	600		99.93
PHA02791	284	ankyrin-like protein; Provisional	99.92
PHA02859	209	ankyrin repeat protein; Provisional	99.91
PHA02741	169	hypothetical protein; Provisional	99.91
KOG0509|consensus	600		99.91
PHA02875	413	ankyrin repeat protein; Provisional	99.91
PHA02875	413	ankyrin repeat protein; Provisional	99.9
PHA03100	480	ankyrin repeat protein; Provisional	99.9
PHA02743	166	Viral ankyrin protein; Provisional	99.9
PHA02874	434	ankyrin repeat protein; Provisional	99.9
PHA02878	477	ankyrin repeat protein; Provisional	99.9
PHA02874	434	ankyrin repeat protein; Provisional	99.9
PHA02795	437	ankyrin-like protein; Provisional	99.89
PHA02878	477	ankyrin repeat protein; Provisional	99.89
PHA02989	494	ankyrin repeat protein; Provisional	99.89
PHA02884	300	ankyrin repeat protein; Provisional	99.89
PHA02798	489	ankyrin-like protein; Provisional	99.89
PHA02946	446	ankyin-like protein; Provisional	99.88
PHA02736	154	Viral ankyrin protein; Provisional	99.88
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.87
KOG0508|consensus	615		99.87
KOG0502|consensus	296		99.87
PHA03095	471	ankyrin-like protein; Provisional	99.87
PHA03100	480	ankyrin repeat protein; Provisional	99.87
PHA02859	209	ankyrin repeat protein; Provisional	99.87
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.87
PHA03095	471	ankyrin-like protein; Provisional	99.87
KOG0514|consensus	452		99.87
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.87
KOG0512|consensus	228		99.86
PHA02917	661	ankyrin-like protein; Provisional	99.86
KOG0508|consensus	615		99.86
KOG0510|consensus	929		99.86
PHA02946	446	ankyin-like protein; Provisional	99.86
PHA02876	682	ankyrin repeat protein; Provisional	99.85
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.85
KOG0512|consensus	228		99.84
PHA02989	494	ankyrin repeat protein; Provisional	99.84
PHA02876	682	ankyrin repeat protein; Provisional	99.84
PHA02798	489	ankyrin-like protein; Provisional	99.84
PHA02743	166	Viral ankyrin protein; Provisional	99.83
KOG0510|consensus	929		99.83
PHA02730	672	ankyrin-like protein; Provisional	99.82
KOG4177|consensus	1143		99.82
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.81
PHA02730	672	ankyrin-like protein; Provisional	99.81
KOG0195|consensus	448		99.8
KOG0505|consensus	527		99.79
PHA02795	437	ankyrin-like protein; Provisional	99.79
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.79
KOG4177|consensus	1143		99.78
PHA02736	154	Viral ankyrin protein; Provisional	99.77
KOG0502|consensus	296		99.76
PHA02792	631	ankyrin-like protein; Provisional	99.76
KOG0195|consensus	448		99.75
PHA02792	631	ankyrin-like protein; Provisional	99.74
PHA02884	300	ankyrin repeat protein; Provisional	99.74
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.73
PHA02741	169	hypothetical protein; Provisional	99.72
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.72
KOG4214|consensus	117		99.71
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.7
PHA02917	661	ankyrin-like protein; Provisional	99.7
KOG3676|consensus	782		99.69
KOG0514|consensus	452		99.68
KOG0507|consensus	854		99.68
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.67
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.64
KOG0507|consensus	854		99.63
KOG3676|consensus	782		99.63
KOG0505|consensus	527		99.58
KOG1710|consensus	396		99.58
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.56
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.55
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.53
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.53
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.52
KOG0515|consensus	752		99.49
KOG0515|consensus	752		99.49
KOG4214|consensus	117		99.49
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.44
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.42
KOG1710|consensus	396		99.38
KOG4369|consensus	2131		99.22
KOG4369|consensus	2131		99.19
KOG0783|consensus	1267		99.15
KOG0818|consensus	669		99.1
KOG0506|consensus	622		99.05
KOG0818|consensus	669		98.98
PF13606	30	Ank_3: Ankyrin repeat	98.97
KOG0783|consensus	1267		98.96
PF13606	30	Ank_3: Ankyrin repeat	98.96
KOG0522|consensus	560		98.93
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.92
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.87
KOG0705|consensus	749		98.86
KOG0782|consensus	1004		98.8
KOG0506|consensus	622		98.77
KOG0522|consensus	560		98.69
KOG0705|consensus	749		98.59
KOG0782|consensus	1004		98.5
KOG0521|consensus	785		98.47
KOG0520|consensus	975		98.47
KOG0521|consensus	785		98.4
KOG3609|consensus	822		98.3
KOG2384|consensus	223		98.24
KOG0511|consensus	516		98.2
KOG0511|consensus	516		98.06
KOG2384|consensus	223		97.99
KOG3609|consensus	822		97.78
KOG0520|consensus	975		97.72
KOG2505|consensus	591		97.71
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.39
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.35
KOG2505|consensus	591		97.23
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	94.45
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	93.59
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	91.95
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	87.04
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	84.81

>KOG4412|consensus

Probab=99.96  E-value=5.6e-29  Score=180.26  Aligned_cols=131  Identities=29%  Similarity=0.368  Sum_probs=119.4

Q ss_pred             ccCCCCchHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHH
Q psy10604         63 DCYSDPNTSFLRAARAGHLDKLRELLEA-GVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQ  141 (225)
Q Consensus        63 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~  141 (225)
                      +.+..|+||||+|+..|+.++|+.|+.+ |+|+|..+ ..|.||||||+..|+.+|+++|++.|+.++.+|.        
T Consensus        67 dkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~t-n~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~--------  137 (226)
T KOG4412|consen   67 DKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATT-NGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDK--------  137 (226)
T ss_pred             CccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceec-CCCcceehhhhcCChhhHHHHHHhcCCCCccccc--------
Confidence            3478899999999999999999999998 99999988 7899999999999999999999999999998886        


Q ss_pred             hhhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHHhhcCCCC
Q psy10604        142 LNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAITDATSL  213 (225)
Q Consensus       142 ~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~~~~~~  213 (225)
                                .|.||||.|+..|..+++++|+..|+.+|.+|..|+||||.|..-|+ ..++.+|++.|+..
T Consensus       138 ----------~~qtplHRAAavGklkvie~Li~~~a~~n~qDk~G~TpL~~al~e~~-~d~a~lLV~~gAd~  198 (226)
T KOG4412|consen  138 ----------QGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYGFTPLHHALAEGH-PDVAVLLVRAGADT  198 (226)
T ss_pred             ----------ccCchhHHHHhccchhhHHHHHhcCCCCCcccccCccHHHHHHhccC-chHHHHHHHhccce
Confidence                      99999999999999999999999999999999999999999987887 57888888887654

>KOG4412|consensus

Probab=99.96  E-value=7.1e-29  Score=179.72  Aligned_cols=131  Identities=27%  Similarity=0.384  Sum_probs=122.2

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHH-HcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCcchhhHHHHh
Q psy10604         65 YSDPNTSFLRAARAGHLDKLRELL-EAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEA-GVDINTSNATSKKLDNQL  142 (225)
Q Consensus        65 ~~~g~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~-g~~~~~~~~~~~~~~~~~  142 (225)
                      +.+|+|||||||..|+.+++.+|+ ..+..++.+| ..||||||+|+..|+.++|+-|+.+ |++++....         
T Consensus        35 dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkD-daGWtPlhia~s~g~~evVk~Ll~r~~advna~tn---------  104 (226)
T KOG4412|consen   35 DQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKD-DAGWTPLHIAASNGNDEVVKELLNRSGADVNATTN---------  104 (226)
T ss_pred             cccCCceeeeeeecCchhHHHHHHhcCCCCCCCcc-ccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecC---------
Confidence            568999999999999999999999 4788899998 8999999999999999999999999 999999885         


Q ss_pred             hhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHHhhcCCCCch
Q psy10604        143 NIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAITDATSLPC  215 (225)
Q Consensus       143 ~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~~~~~~~~  215 (225)
                               .|.|+||||+..|+.+++.+|+++|+.++.+|..|.||||-|+..|.+ .++.+|+..+++++.
T Consensus       105 ---------~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGkl-kvie~Li~~~a~~n~  167 (226)
T KOG4412|consen  105 ---------GGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKL-KVIEYLISQGAPLNT  167 (226)
T ss_pred             ---------CCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccch-hhHHHHHhcCCCCCc
Confidence                     999999999999999999999999999999999999999999999997 678888888777753

>PHA02791 ankyrin-like protein; Provisional

Probab=99.94  E-value=4.1e-25  Score=177.69  Aligned_cols=148  Identities=13%  Similarity=0.146  Sum_probs=124.1

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchh---------
Q psy10604         66 SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSK---------  136 (225)
Q Consensus        66 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~---------  136 (225)
                      .++.||||+|+..|+.+++++|++.|++++..+ ..|.||||+|+..|+.+++++|++.|++++.++..+.         
T Consensus        59 ~d~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d-~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~  137 (284)
T PHA02791         59 LENEFPLHQAATLEDTKIVKILLFSGMDDSQFD-DKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVM  137 (284)
T ss_pred             CCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCC-CCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHH
Confidence            357899999999999999999999999999998 8999999999999999999999999999987665321         


Q ss_pred             ----hHHHHhhhhh-hccC-CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChH-HHHHHHcCChHHHHHHHhhc
Q psy10604        137 ----KLDNQLNIHQ-KNIK-NNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTA-LHIAALDSLVTDIASSAITD  209 (225)
Q Consensus       137 ----~~~~~~~~~~-~~~d-~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tp-L~~A~~~~~~~~i~~~l~~~  209 (225)
                          ....++...+ ...| ..|+||||+|+..|+.+++++|+++|++++.+|..|.|| ||+|+..|+. .++++|+..
T Consensus       138 ~g~~eivk~LL~~~~~~~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~-e~v~lLl~~  216 (284)
T PHA02791        138 LNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDL-EMLQALFKY  216 (284)
T ss_pred             cCCHHHHHHHHhcCCcccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCH-HHHHHHHHC
Confidence                2233333332 2234 258999999999999999999999999999999999987 9999999996 566777777


Q ss_pred             CCCCch
Q psy10604        210 ATSLPC  215 (225)
Q Consensus       210 ~~~~~~  215 (225)
                      |+.++.
T Consensus       217 Ga~in~  222 (284)
T PHA02791        217 DINIYS  222 (284)
T ss_pred             CCCCcc
Confidence            766643

>KOG0509|consensus

Probab=99.93  E-value=1.2e-25  Score=189.93  Aligned_cols=155  Identities=28%  Similarity=0.287  Sum_probs=129.8

Q ss_pred             cccCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhh
Q psy10604         58 LEPCYDCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKK  137 (225)
Q Consensus        58 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~  137 (225)
                      .......+.+|.|+|||||.+++++++++|+++|+++|......|.||||||+++|+..+|++|+++|++++.+|.++..
T Consensus        68 g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~  147 (600)
T KOG0509|consen   68 GESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQGLT  147 (600)
T ss_pred             CcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCCceecCCCCc
Confidence            33444467799999999999999999999999999999998888999999999999999999999999999999985543


Q ss_pred             ------------HHHHhhhhh---hccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCChHHHHHHHcCChHH
Q psy10604        138 ------------LDNQLNIHQ---KNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDAST-KKGNTALHIAALDSLVTD  201 (225)
Q Consensus       138 ------------~~~~~~~~~---~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d-~~g~tpL~~A~~~~~~~~  201 (225)
                                  +..|+...+   ..+|++|+||||||+.+|....+..|+..|+.+...| .+|.||||+|+..|+...
T Consensus       148 ~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d~~~g~TpLHwa~~~gN~~~  227 (600)
T KOG0509|consen  148 PLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLLLTDDNHGNTPLHWAVVGGNLTA  227 (600)
T ss_pred             HHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhcccccccccccCCchHHHHHhcCCcce
Confidence                        223333333   3346889999999999998887888888999998887 789999999999999877


Q ss_pred             HHHHHhhcCCCC
Q psy10604        202 IASSAITDATSL  213 (225)
Q Consensus       202 i~~~l~~~~~~~  213 (225)
                      +. +++++|...
T Consensus       228 v~-Ll~~g~~~~  238 (600)
T KOG0509|consen  228 VK-LLLEGGADL  238 (600)
T ss_pred             Ee-hhhhcCCcc
Confidence            77 777766554

>PHA02791 ankyrin-like protein; Provisional

Probab=99.92  E-value=6.7e-24  Score=170.70  Aligned_cols=116  Identities=22%  Similarity=0.192  Sum_probs=91.5

Q ss_pred             ccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHh
Q psy10604         63 DCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQL  142 (225)
Q Consensus        63 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~  142 (225)
                      ..+.+|.||||+|+..|+.+++++|++.|++++..+   |.||||+|+..|+.+++++|++.|++++.++.         
T Consensus        25 ~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d---~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~---------   92 (284)
T PHA02791         25 KADVHGHSALYYAIADNNVRLVCTLLNAGALKNLLE---NEFPLHQAATLEDTKIVKILLFSGMDDSQFDD---------   92 (284)
T ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCCC---CCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCC---------
Confidence            357889999999999999999999999999988754   78999999999999999999999999998886         


Q ss_pred             hhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCC-hHHHHHHHcCCh
Q psy10604        143 NIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGN-TALHIAALDSLV  199 (225)
Q Consensus       143 ~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~-tpL~~A~~~~~~  199 (225)
                               .|+||||+|+..|+.+++++|+.+|++++.++..|. ||||+|+..|+.
T Consensus        93 ---------~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~  141 (284)
T PHA02791         93 ---------KGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDV  141 (284)
T ss_pred             ---------CCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCH
Confidence                     566666666666666666666666666655555553 566666665554

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.91  E-value=1.9e-23  Score=161.81  Aligned_cols=133  Identities=19%  Similarity=0.248  Sum_probs=114.9

Q ss_pred             ccCCCCchHHHHHHHcC--CHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHc---CCHHHHHHHHHCCCCCCCCCcchhh
Q psy10604         63 DCYSDPNTSFLRAARAG--HLDKLRELLEAGVDINTSNASDPNTSFLRAARA---GHLDKLRELLEAGVDINTSNATSKK  137 (225)
Q Consensus        63 ~~~~~g~t~L~~A~~~g--~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~---~~~~iv~~Ll~~g~~~~~~~~~~~~  137 (225)
                      ..+..|.||||+|+..+  +.+++++|++.|++++..+...|.||||+|+..   ++.+++++|+++|++++.++.    
T Consensus        46 ~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~----  121 (209)
T PHA02859         46 DCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDE----  121 (209)
T ss_pred             ccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCcCC----
Confidence            35678999999999855  899999999999999998745899999998764   478999999999999999886    


Q ss_pred             HHHHhhhhhhccCCCCCcHHHHHHH--cCCHHHHHHHHHCCCCCCCCCCCCChHHHH-HHHcCChHHHHHHHhhcCCCCc
Q psy10604        138 LDNQLNIHQKNIKNNGLNALHLAAK--DGHTTVVKALLKGGCKVDASTKKGNTALHI-AALDSLVTDIASSAITDATSLP  214 (225)
Q Consensus       138 ~~~~~~~~~~~~d~~g~t~L~~A~~--~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~-A~~~~~~~~i~~~l~~~~~~~~  214 (225)
                                    .|.||||+|+.  .++.+++++|+++|++++.+|..|.||||. |+..++ ..++.+|+..|+.++
T Consensus       122 --------------~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~-~~iv~~Ll~~Gadi~  186 (209)
T PHA02859        122 --------------DGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSD-KKIFDFLTSLGIDIN  186 (209)
T ss_pred             --------------CCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCC-HHHHHHHHHcCCCCC
Confidence                          99999999876  468999999999999999999999999995 556666 567788888776554

>PHA02741 hypothetical protein; Provisional

Probab=99.91  E-value=3.9e-23  Score=155.10  Aligned_cols=125  Identities=22%  Similarity=0.268  Sum_probs=111.6

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHH------cCCCCCCCCCCCCCCHHHHHHHcCC----HHHHHHHHHCCCCCCCCCcc
Q psy10604         65 YSDPNTSFLRAARAGHLDKLRELLE------AGVDINTSNASDPNTSFLRAARAGH----LDKLRELLEAGVDINTSNAT  134 (225)
Q Consensus        65 ~~~g~t~L~~A~~~g~~~~v~~Ll~------~g~~~~~~~~~~g~t~Lh~A~~~~~----~~iv~~Ll~~g~~~~~~~~~  134 (225)
                      +..|.|+||+|++.|+.++++.|+.      .|++++.++ ..|.||||+|+..|+    .+++++|++.|++++.++. 
T Consensus        18 ~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d-~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~-   95 (169)
T PHA02741         18 NSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATD-DAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEM-   95 (169)
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccC-CCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCc-
Confidence            5779999999999999999999864      368888888 889999999999998    5899999999999998763 


Q ss_pred             hhhHHHHhhhhhhccCCCCCcHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCChHHHHHHHcCChHHHHHHHhh
Q psy10604        135 SKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLK-GGCKVDASTKKGNTALHIAALDSLVTDIASSAIT  208 (225)
Q Consensus       135 ~~~~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~-~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~  208 (225)
                                      ..|+||||+|+..++.+++++|+. .|++++..|..|.||||+|+..|+. .++.+|++
T Consensus        96 ----------------~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~-~iv~~L~~  153 (169)
T PHA02741         96 ----------------LEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDV-AMMQILRE  153 (169)
T ss_pred             ----------------CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCH-HHHHHHHH
Confidence                            279999999999999999999997 5999999999999999999999996 55666554

>KOG0509|consensus

Probab=99.91  E-value=4.6e-24  Score=180.42  Aligned_cols=130  Identities=29%  Similarity=0.354  Sum_probs=113.7

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHH----
Q psy10604         66 SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQ----  141 (225)
Q Consensus        66 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~----  141 (225)
                      .-+.||||||++.|++.+|.+|+++|+|++.+| .+|.+|||+|+.+|+..++-+|+..|++++.+|.++...+..    
T Consensus       110 ~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D-~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAayk  188 (600)
T KOG0509|consen  110 VLGSTPLHWAARNGHISVVDLLLQHGADPTLKD-KQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYK  188 (600)
T ss_pred             CCCCCcchHHHHcCcHHHHHHHHHcCCCCceec-CCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHh
Confidence            456899999999999999999999999999999 999999999999999999999999999999999866543322    


Q ss_pred             --------hhhhh---hccC-CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHc
Q psy10604        142 --------LNIHQ---KNIK-NNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALD  196 (225)
Q Consensus       142 --------~~~~~---~~~d-~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~  196 (225)
                              +...+   ..+| ..|.||||||+..|+..++++|++.|++.+.+|.+|.||+++|...
T Consensus       189 g~~~~v~~LL~f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  189 GFALFVRRLLKFGASLLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             cccHHHHHHHHhcccccccccccCCchHHHHHhcCCcceEehhhhcCCcccccccCCCCHHHHHHHh
Confidence                    22222   2234 8999999999999999999977788999999999999999999876

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.91  E-value=3.5e-23  Score=176.10  Aligned_cols=131  Identities=24%  Similarity=0.323  Sum_probs=103.1

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhhh
Q psy10604         65 YSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNI  144 (225)
Q Consensus        65 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~~  144 (225)
                      +.+|.||||+|+..|+.+++++|++.|++++..+ ..|.||||+|+..|+.+++++|++.|++++.++.           
T Consensus        99 ~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~-~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~-----------  166 (413)
T PHA02875         99 YKDGMTPLHLATILKKLDIMKLLIARGADPDIPN-TDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDC-----------  166 (413)
T ss_pred             cCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCC-CCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCC-----------
Confidence            3457777777777777777777777777777776 6777777777777777777777777777777664           


Q ss_pred             hhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC-ChHHHHHHHcCChHHHHHHHhhcCCCCch
Q psy10604        145 HQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKG-NTALHIAALDSLVTDIASSAITDATSLPC  215 (225)
Q Consensus       145 ~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g-~tpL~~A~~~~~~~~i~~~l~~~~~~~~~  215 (225)
                             .|+||||+|+..|+.+++++|+++|++++..+..| .||+|+|+..|+. .++++|+..|+..+.
T Consensus       167 -------~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~-~iv~~Ll~~gad~n~  230 (413)
T PHA02875        167 -------CGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKI-DIVRLFIKRGADCNI  230 (413)
T ss_pred             -------CCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCH-HHHHHHHHCCcCcch
Confidence                   88999999999999999999999999998888876 4788889998885 566777777766643

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.90  E-value=9.1e-23  Score=173.55  Aligned_cols=130  Identities=22%  Similarity=0.277  Sum_probs=95.2

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhhhh
Q psy10604         66 SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIH  145 (225)
Q Consensus        66 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~~~  145 (225)
                      .++.||||+|+..|+.+++++|++.|.+.+......|.||||+|+..|+.+++++|++.|++++.++             
T Consensus        66 ~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~-------------  132 (413)
T PHA02875         66 PDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPN-------------  132 (413)
T ss_pred             CCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCC-------------
Confidence            3455556666655665556655555554433222456666666666666666666666666666555             


Q ss_pred             hhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHHhhcCCCCc
Q psy10604        146 QKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAITDATSLP  214 (225)
Q Consensus       146 ~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~~~~~~~  214 (225)
                           ..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+. .++++|+..|+..+
T Consensus       133 -----~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~-eiv~~Ll~~ga~~n  195 (413)
T PHA02875        133 -----TDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDI-AICKMLLDSGANID  195 (413)
T ss_pred             -----CCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCH-HHHHHHHhCCCCCC
Confidence                 4899999999999999999999999999999999999999999999996 56677777666553

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.90  E-value=9.7e-23  Score=176.47  Aligned_cols=150  Identities=28%  Similarity=0.344  Sum_probs=123.6

Q ss_pred             cCCCCchHHHHHHHcC--CHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcch------
Q psy10604         64 CYSDPNTSFLRAARAG--HLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATS------  135 (225)
Q Consensus        64 ~~~~g~t~L~~A~~~g--~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~------  135 (225)
                      .+..|.||||+|+..|  +.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|++.|++++..+..+      
T Consensus       137 ~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d-~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~  215 (480)
T PHA03100        137 KNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKN-RYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIF  215 (480)
T ss_pred             cCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCccccc-CCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHH
Confidence            5677889999999999  8999999999999998888 689999999999999999999999999888765433      


Q ss_pred             --------------hhHHHHhhhhhhc---cCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCC
Q psy10604        136 --------------KKLDNQLNIHQKN---IKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSL  198 (225)
Q Consensus       136 --------------~~~~~~~~~~~~~---~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~  198 (225)
                                    ......+...+.+   .|..|.||||+|+..|+.+++++|+++|++++.+|..|.||+++|+..++
T Consensus       216 ~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A~~~~~  295 (480)
T PHA03100        216 ETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNN  295 (480)
T ss_pred             HhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhCC
Confidence                          2334444444333   46789999999999999999999999999999999999999999999998


Q ss_pred             hHHHHHHHhhcCCCCch
Q psy10604        199 VTDIASSAITDATSLPC  215 (225)
Q Consensus       199 ~~~i~~~l~~~~~~~~~  215 (225)
                      . .++++|+..|+++..
T Consensus       296 ~-~iv~~Ll~~g~~i~~  311 (480)
T PHA03100        296 K-EIFKLLLNNGPSIKT  311 (480)
T ss_pred             H-HHHHHHHhcCCCHHH
Confidence            5 677777777766543

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.90  E-value=7e-23  Score=153.16  Aligned_cols=130  Identities=20%  Similarity=0.219  Sum_probs=113.6

Q ss_pred             CCCCchHHHHHHHcCCH----HHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHH---HHHHHHCCCCCCCCCcchhh
Q psy10604         65 YSDPNTSFLRAARAGHL----DKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDK---LRELLEAGVDINTSNATSKK  137 (225)
Q Consensus        65 ~~~g~t~L~~A~~~g~~----~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~i---v~~Ll~~g~~~~~~~~~~~~  137 (225)
                      +.++.++||.|++.|+.    +++++|++.|++++..+ ..|+||||+|+.+|+.++   +++|++.|++++.++.    
T Consensus        17 ~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d-~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~----   91 (166)
T PHA02743         17 DEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYD-HHGRQCTHMVAWYDRANAVMKIELLVNMGADINAREL----   91 (166)
T ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccC-CCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCC----
Confidence            45677899999999998    66677888999999888 899999999999988654   8999999999998873    


Q ss_pred             HHHHhhhhhhccCCCCCcHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCChHHHHHHHcCChHHHHHHHhhcCCCC
Q psy10604        138 LDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLK-GGCKVDASTKKGNTALHIAALDSLVTDIASSAITDATSL  213 (225)
Q Consensus       138 ~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~-~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~~~~~~  213 (225)
                                   ..|+||||+|+..++.+++++|+. .|++++.+|..|.||||+|+..++. .++.+|+..++..
T Consensus        92 -------------~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~-~iv~~Ll~~ga~~  154 (166)
T PHA02743         92 -------------GTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDR-RMMEILRANGAVC  154 (166)
T ss_pred             -------------CCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCH-HHHHHHHHcCCCC
Confidence                         279999999999999999999995 7999999999999999999999995 5777777766554

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.90  E-value=1.9e-22  Score=172.66  Aligned_cols=146  Identities=18%  Similarity=0.230  Sum_probs=83.7

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCc-----------
Q psy10604         65 YSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNA-----------  133 (225)
Q Consensus        65 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~-----------  133 (225)
                      +..|.||||+|+..|+.+++++|++.|++++..+ ..|.||||+|+..|+.+++++|++.|++++..+.           
T Consensus       121 ~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d-~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~  199 (434)
T PHA02874        121 DAELKTFLHYAIKKGDLESIKMLFEYGADVNIED-DNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAE  199 (434)
T ss_pred             CCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcC-CCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence            4455566666666666666666666666555555 5555566655555555555555555555554443           


Q ss_pred             ----------------------chhhHHHHhh-------------hhhhccCCCCCcHHHHHHHcC-CHHHHHHHHHCCC
Q psy10604        134 ----------------------TSKKLDNQLN-------------IHQKNIKNNGLNALHLAAKDG-HTTVVKALLKGGC  177 (225)
Q Consensus       134 ----------------------~~~~~~~~~~-------------~~~~~~d~~g~t~L~~A~~~~-~~~~~~~Ll~~ga  177 (225)
                                            .+...+....             ...+..|..|+||||+|+..+ +.+++++|+.+|+
T Consensus       200 ~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~~~i~~Ll~~~~in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~ga  279 (434)
T PHA02874        200 YGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNRSAIELLINNASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKA  279 (434)
T ss_pred             cCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCChHHHHHHHcCCCCCCcCCCCCCHHHHHHhcCCcHHHHHHHHHCcC
Confidence                                  2221111100             111233556777777777654 5677777777777


Q ss_pred             CCCCCCCCCChHHHHHHHcCChHHHHHHHhhcCC
Q psy10604        178 KVDASTKKGNTALHIAALDSLVTDIASSAITDAT  211 (225)
Q Consensus       178 ~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~~~~  211 (225)
                      +++.+|..|.||||+|+..++...+++.++..+.
T Consensus       280 d~n~~d~~g~TpL~~A~~~~~~~~~ik~ll~~~~  313 (434)
T PHA02874        280 DISIKDNKGENPIDTAFKYINKDPVIKDIIANAV  313 (434)
T ss_pred             CCCCCCCCCCCHHHHHHHhCCccHHHHHHHHhcC
Confidence            7777777777777777766644455555555443

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.90  E-value=1.6e-22  Score=175.05  Aligned_cols=128  Identities=21%  Similarity=0.239  Sum_probs=102.1

Q ss_pred             cCCC-CchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHh
Q psy10604         64 CYSD-PNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQL  142 (225)
Q Consensus        64 ~~~~-g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~  142 (225)
                      .+.. |.||||+|+..|+.+++++|++.|++++..+ ..|.||||+|+..|+.+++++|++.|++++.++.         
T Consensus       163 ~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d-~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~---------  232 (477)
T PHA02878        163 KDRHKGNTALHYATENKDQRLTELLLSYGANVNIPD-KTNNSPLHHAVKHYNKPIVHILLENGASTDARDK---------  232 (477)
T ss_pred             cCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcC-CCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCC---------
Confidence            4555 9999999999999999999999999999998 8999999999999999999999999999999886         


Q ss_pred             hhhhhccCCCCCcHHHHHHHc-CCHHHHHHHHHCCCCCCCCCC-CCChHHHHHHHcCChHHHHHHHhhcCCCC
Q psy10604        143 NIHQKNIKNNGLNALHLAAKD-GHTTVVKALLKGGCKVDASTK-KGNTALHIAALDSLVTDIASSAITDATSL  213 (225)
Q Consensus       143 ~~~~~~~d~~g~t~L~~A~~~-~~~~~~~~Ll~~ga~~~~~d~-~g~tpL~~A~~~~~~~~i~~~l~~~~~~~  213 (225)
                               .|+||||+|+.. ++.+++++|+++|++++.++. .|.||||+|+  ++ ..++++|+..|+.+
T Consensus       233 ---------~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A~--~~-~~~v~~Ll~~gadi  293 (477)
T PHA02878        233 ---------CGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSSI--KS-ERKLKLLLEYGADI  293 (477)
T ss_pred             ---------CCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHHc--cC-HHHHHHHHHCCCCC
Confidence                     677777777654 466777777777777766664 5777777773  33 34555555555444

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.90  E-value=2.8e-22  Score=171.62  Aligned_cols=141  Identities=18%  Similarity=0.222  Sum_probs=106.5

Q ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC---------------
Q psy10604         64 CYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDI---------------  128 (225)
Q Consensus        64 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~---------------  128 (225)
                      .+..|.||||+|+..|+.+++++|++.|++++..+ ..|.||||+|+..|+.+++++|++.|+++               
T Consensus       153 ~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~-~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~  231 (434)
T PHA02874        153 EDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKD-NNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAI  231 (434)
T ss_pred             cCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCC-CCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHH
Confidence            46789999999999999999999999999999888 88999999999999999999999988653               


Q ss_pred             ----------------CCCCcchh-------------hHHHHhhhhh---hccCCCCCcHHHHHHHcC-CHHHHHHHHHC
Q psy10604        129 ----------------NTSNATSK-------------KLDNQLNIHQ---KNIKNNGLNALHLAAKDG-HTTVVKALLKG  175 (225)
Q Consensus       129 ----------------~~~~~~~~-------------~~~~~~~~~~---~~~d~~g~t~L~~A~~~~-~~~~~~~Ll~~  175 (225)
                                      +.++..+.             .....+...+   +..|..|.||||+|+..+ ..++++.|+..
T Consensus       232 ~~~~~~i~~Ll~~~~in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~gad~n~~d~~g~TpL~~A~~~~~~~~~ik~ll~~  311 (434)
T PHA02874        232 IHNRSAIELLINNASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADISIKDNKGENPIDTAFKYINKDPVIKDIIAN  311 (434)
T ss_pred             HCChHHHHHHHcCCCCCCcCCCCCCHHHHHHhcCCcHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHhCCccHHHHHHHHh
Confidence                            33333222             2333333333   335689999999999887 67889999999


Q ss_pred             CCCCCCCCCCC-ChHHHHHHHcCChHHHHHHH
Q psy10604        176 GCKVDASTKKG-NTALHIAALDSLVTDIASSA  206 (225)
Q Consensus       176 ga~~~~~d~~g-~tpL~~A~~~~~~~~i~~~l  206 (225)
                      ++.++..+..+ .+++..+...++ ..+..+.
T Consensus       312 ~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~  342 (434)
T PHA02874        312 AVLIKEADKLKDSDFLEHIEIKDN-KEFSDFI  342 (434)
T ss_pred             cCchhhccccchhHHHHHHHHhcc-chHHHHH
Confidence            98886666554 556666665555 2344433

>PHA02795 ankyrin-like protein; Provisional

Probab=99.89  E-value=4e-22  Score=166.89  Aligned_cols=150  Identities=18%  Similarity=0.179  Sum_probs=126.7

Q ss_pred             CCCCchHHHHHHH--cCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCC-c--------
Q psy10604         65 YSDPNTSFLRAAR--AGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSN-A--------  133 (225)
Q Consensus        65 ~~~g~t~L~~A~~--~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~-~--------  133 (225)
                      ...++|+||+++.  .|+.++|++|+++|++++..+   +.||||+|+..++.+++++|+++|++..... .        
T Consensus       113 ~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~~---~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~  189 (437)
T PHA02795        113 CNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKIE---CLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQY  189 (437)
T ss_pred             cccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCCC---CCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhcc
Confidence            4558999999999  899999999999999998754   5899999999999999999999998532221 0        


Q ss_pred             ---------chhhHHHHhhhhhhcc---CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCh--
Q psy10604        134 ---------TSKKLDNQLNIHQKNI---KNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLV--  199 (225)
Q Consensus       134 ---------~~~~~~~~~~~~~~~~---d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~--  199 (225)
                               +..+...++...++++   |..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.  
T Consensus       190 t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~  269 (437)
T PHA02795        190 TRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIA  269 (437)
T ss_pred             chhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCccc
Confidence                     1234556666666554   57899999999999999999999999999999999999999999999852  


Q ss_pred             -----HHHHHHHhhcCCCCchHH
Q psy10604        200 -----TDIASSAITDATSLPCSV  217 (225)
Q Consensus       200 -----~~i~~~l~~~~~~~~~~~  217 (225)
                           ..++++|++.++.+.|..
T Consensus       270 ~~~~~~eIvelLL~~gadI~~~~  292 (437)
T PHA02795        270 RRETHLKILEILLREPLSIDCIK  292 (437)
T ss_pred             ccccHHHHHHHHHhCCCCCCchh
Confidence                 468889999999988865

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.89  E-value=3.6e-22  Score=172.88  Aligned_cols=112  Identities=29%  Similarity=0.334  Sum_probs=100.4

Q ss_pred             HHHHHHHcCCCCCCCCCCC-CCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhhhhhhccCCCCCcHHHHHH
Q psy10604         83 KLRELLEAGVDINTSNASD-PNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAA  161 (225)
Q Consensus        83 ~v~~Ll~~g~~~~~~~~~~-g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~  161 (225)
                      ++++|++.|++++..+ .. |.||||+|+..|+.+++++|++.|++++.++.                  .|+||||+|+
T Consensus       149 iv~~Ll~~gadin~~~-~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~------------------~g~tpLh~A~  209 (477)
T PHA02878        149 ITKLLLSYGADINMKD-RHKGNTALHYATENKDQRLTELLLSYGANVNIPDK------------------TNNSPLHHAV  209 (477)
T ss_pred             HHHHHHHcCCCCCccC-CCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCC------------------CCCCHHHHHH
Confidence            6677777889999888 55 99999999999999999999999999998886                  8999999999


Q ss_pred             HcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHc-CChHHHHHHHhhcCCCCc
Q psy10604        162 KDGHTTVVKALLKGGCKVDASTKKGNTALHIAALD-SLVTDIASSAITDATSLP  214 (225)
Q Consensus       162 ~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~-~~~~~i~~~l~~~~~~~~  214 (225)
                      ..++.+++++|+++|++++.+|..|.||||+|+.. ++ ..++++|+..|+.++
T Consensus       210 ~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~-~~iv~~Ll~~gadvn  262 (477)
T PHA02878        210 KHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKD-YDILKLLLEHGVDVN  262 (477)
T ss_pred             HhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCC-HHHHHHHHHcCCCCC
Confidence            99999999999999999999999999999999976 55 467777887776654

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.89  E-value=3.4e-22  Score=173.68  Aligned_cols=149  Identities=21%  Similarity=0.211  Sum_probs=93.6

Q ss_pred             CCCCchHHHHHHHc--CCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcC----CHHHHHHHHHCCCCCCCCCcchhhH
Q psy10604         65 YSDPNTSFLRAARA--GHLDKLRELLEAGVDINTSNASDPNTSFLRAARAG----HLDKLRELLEAGVDINTSNATSKKL  138 (225)
Q Consensus        65 ~~~g~t~L~~A~~~--g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~----~~~iv~~Ll~~g~~~~~~~~~~~~~  138 (225)
                      +..|.||||+|+..  ++.+++++|++.|++++...+..|.||||+|+..+    +.+++++|++.|++++..+......
T Consensus       142 d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~  221 (494)
T PHA02989        142 NSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESV  221 (494)
T ss_pred             CCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccH
Confidence            34455555554432  34455555555555555422244555555554432    4555555555555555444311111


Q ss_pred             HHH------------------hh--hhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCC
Q psy10604        139 DNQ------------------LN--IHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSL  198 (225)
Q Consensus       139 ~~~------------------~~--~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~  198 (225)
                      +..                  +.  ...+..|..|+||||+|+..++.+++++|+++|++++.+|..|.||||+|+..|+
T Consensus       222 l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~~~~~  301 (494)
T PHA02989        222 LESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIKHGN  301 (494)
T ss_pred             HHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCC
Confidence            111                  11  1123456789999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHhhcCCCCc
Q psy10604        199 VTDIASSAITDATSLP  214 (225)
Q Consensus       199 ~~~i~~~l~~~~~~~~  214 (225)
                      . .+++.|+....+..
T Consensus       302 ~-~iv~~LL~~~p~~~  316 (494)
T PHA02989        302 I-DMLNRILQLKPGKY  316 (494)
T ss_pred             H-HHHHHHHhcCCChH
Confidence            6 55566665554443

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.89  E-value=8.6e-22  Score=158.76  Aligned_cols=119  Identities=15%  Similarity=0.178  Sum_probs=105.9

Q ss_pred             CCCCc-hHHHHHHHcCCHHHHHHHHHcCCCCCCCC---CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHH
Q psy10604         65 YSDPN-TSFLRAARAGHLDKLRELLEAGVDINTSN---ASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDN  140 (225)
Q Consensus        65 ~~~g~-t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~---~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~  140 (225)
                      +..|+ ++||.|+..|+.+++++|+++|++++..+   ...|.||||+|+..++.+++++|+++|++++.++.       
T Consensus        29 d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~-------  101 (300)
T PHA02884         29 NKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAE-------  101 (300)
T ss_pred             CcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccC-------
Confidence            45554 45677788899999999999999999874   25899999999999999999999999999998642       


Q ss_pred             HhhhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChH
Q psy10604        141 QLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVT  200 (225)
Q Consensus       141 ~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~  200 (225)
                                ..|.||||+|+..++.+++++|+.+|++++.+|..|.||||+|+..++..
T Consensus       102 ----------~~g~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~  151 (300)
T PHA02884        102 ----------EAKITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNF  151 (300)
T ss_pred             ----------CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChh
Confidence                      37999999999999999999999999999999999999999999877643

>PHA02798 ankyrin-like protein; Provisional

Probab=99.89  E-value=5.7e-22  Score=172.05  Aligned_cols=150  Identities=24%  Similarity=0.286  Sum_probs=120.3

Q ss_pred             cccCCCCchHHHHHHHcC---CHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCC---HHHHHHHHHCCCCCCCCCcc-
Q psy10604         62 YDCYSDPNTSFLRAARAG---HLDKLRELLEAGVDINTSNASDPNTSFLRAARAGH---LDKLRELLEAGVDINTSNAT-  134 (225)
Q Consensus        62 ~~~~~~g~t~L~~A~~~g---~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~---~~iv~~Ll~~g~~~~~~~~~-  134 (225)
                      ...+.+|.||||+|+..+   +.+++++|+++|++++..+ ..|.||||+|+..++   .+++++|++.|++++.++.. 
T Consensus       103 N~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d-~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~  181 (489)
T PHA02798        103 NKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLD-KDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKE  181 (489)
T ss_pred             CCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccC-CCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcC
Confidence            335778999999999876   6899999999999999998 899999999999988   89999999999998765321 


Q ss_pred             h----------------hhHHHHhhh------------------------------------------hhhccCCCCCcH
Q psy10604        135 S----------------KKLDNQLNI------------------------------------------HQKNIKNNGLNA  156 (225)
Q Consensus       135 ~----------------~~~~~~~~~------------------------------------------~~~~~d~~g~t~  156 (225)
                      +                ....+++..                                          ..+.+|..|+||
T Consensus       182 ~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TP  261 (489)
T PHA02798        182 KYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNP  261 (489)
T ss_pred             CCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccH
Confidence            0                011111111                                          122346789999


Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHHhhcCCCC
Q psy10604        157 LHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAITDATSL  213 (225)
Q Consensus       157 L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~~~~~~  213 (225)
                      ||+|+..++.+++++|+++|++++.+|..|.||||+|+..++.+ ++..++..+...
T Consensus       262 L~~A~~~~~~~~v~~LL~~GAdin~~d~~G~TpL~~A~~~~~~~-iv~~lL~~~~~~  317 (489)
T PHA02798        262 LYYSVSHNNRKIFEYLLQLGGDINIITELGNTCLFTAFENESKF-IFNSILNKKPNK  317 (489)
T ss_pred             HHHHHHcCcHHHHHHHHHcCCcccccCCCCCcHHHHHHHcCcHH-HHHHHHccCCCH
Confidence            99999999999999999999999999999999999999999964 555555554444

>PHA02946 ankyin-like protein; Provisional

Probab=99.88  E-value=2.5e-21  Score=165.69  Aligned_cols=151  Identities=19%  Similarity=0.257  Sum_probs=121.9

Q ss_pred             CcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCC--HHHHHHHHHCCCCCCC-CCcch--
Q psy10604         61 CYDCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGH--LDKLRELLEAGVDINT-SNATS--  135 (225)
Q Consensus        61 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~--~~iv~~Ll~~g~~~~~-~~~~~--  135 (225)
                      ....+.+|.||||+|+..|+.+++++|+++|++++.++ ..|.||||+|+..++  .+++++|++.|++++. .+..+  
T Consensus        65 vn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d-~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~t  143 (446)
T PHA02946         65 PNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACD-KQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCG  143 (446)
T ss_pred             CCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCC-CCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCc
Confidence            33467889999999999999999999999999999998 899999999998764  7899999999999985 33322  


Q ss_pred             ---------hhHHHHhhhhhh---ccCCCCCcHHHHHHHcC--CHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcC--Ch
Q psy10604        136 ---------KKLDNQLNIHQK---NIKNNGLNALHLAAKDG--HTTVVKALLKGGCKVDASTKKGNTALHIAALDS--LV  199 (225)
Q Consensus       136 ---------~~~~~~~~~~~~---~~d~~g~t~L~~A~~~~--~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~--~~  199 (225)
                               ......+...+.   ..|..|+||||+|+..+  ..+++++|+++|++++.+|..|.||||+|+..|  +.
T Consensus       144 pL~aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~  223 (446)
T PHA02946        144 PLLACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNV  223 (446)
T ss_pred             HHHHHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcH
Confidence                     223334444443   34789999999988755  478999999999999999999999999999986  43


Q ss_pred             HHHHHHHhhcCCCCc
Q psy10604        200 TDIASSAITDATSLP  214 (225)
Q Consensus       200 ~~i~~~l~~~~~~~~  214 (225)
                       .++.+|+. ++.++
T Consensus       224 -~iv~lLl~-gadin  236 (446)
T PHA02946        224 -DIINLLLP-STDVN  236 (446)
T ss_pred             -HHHHHHHc-CCCCC
Confidence             46667765 45554

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.88  E-value=7.1e-22  Score=146.05  Aligned_cols=127  Identities=17%  Similarity=0.140  Sum_probs=102.9

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHcCC--C-----CCCCCCCCCCCHHHHHHHcCCH---HHHHHHHHCCCCCCCCCcc
Q psy10604         65 YSDPNTSFLRAARAGHLDKLRELLEAGV--D-----INTSNASDPNTSFLRAARAGHL---DKLRELLEAGVDINTSNAT  134 (225)
Q Consensus        65 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~--~-----~~~~~~~~g~t~Lh~A~~~~~~---~iv~~Ll~~g~~~~~~~~~  134 (225)
                      +.+|.||||+|++.|+.+  ..+...+.  +     +..++ ..|.||||+|+..|+.   +++++|++.|++++.++. 
T Consensus        14 d~~g~tpLh~A~~~g~~~--~l~~~~~~~~~~~~~~~~~~d-~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~-   89 (154)
T PHA02736         14 DIEGENILHYLCRNGGVT--DLLAFKNAISDENRYLVLEYN-RHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKER-   89 (154)
T ss_pred             CCCCCCHHHHHHHhCCHH--HHHHHHHHhcchhHHHHHHhc-CCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCC-
Confidence            577999999999999843  33322222  2     22345 7899999999999987   468899999999998863 


Q ss_pred             hhhHHHHhhhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCChHHHHHHHcCChHHHHHHHhhcCCC
Q psy10604        135 SKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKG-GCKVDASTKKGNTALHIAALDSLVTDIASSAITDATS  212 (225)
Q Consensus       135 ~~~~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~-ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~~~~~  212 (225)
                                      ..|+||||+|+..++.+++++|+.. |++++.+|..|.||||+|+..|+. .++.+|+..++.
T Consensus        90 ----------------~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~-~i~~~Ll~~ga~  151 (154)
T PHA02736         90 ----------------VFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDA-KMMNILRAKGAQ  151 (154)
T ss_pred             ----------------CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCH-HHHHHHHHcCCC
Confidence                            2799999999999999999999984 999999999999999999999996 455666665543

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.87  E-value=2.4e-21  Score=177.21  Aligned_cols=147  Identities=27%  Similarity=0.304  Sum_probs=98.2

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHH-------
Q psy10604         67 DPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLD-------  139 (225)
Q Consensus        67 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~-------  139 (225)
                      ++.++|+.||..|+.++++.|++.|++++..+ ..|.||||+|+..|+.+++++|+++|++++.++..+...+       
T Consensus       524 ~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d-~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~g  602 (823)
T PLN03192        524 NMASNLLTVASTGNAALLEELLKAKLDPDIGD-SKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAK  602 (823)
T ss_pred             cchhHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHhC
Confidence            34455566666666666666666666666555 5566666666666666666666666666555554322211       


Q ss_pred             -----HHhhhhhhcc-CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHHhhcCCCC
Q psy10604        140 -----NQLNIHQKNI-KNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAITDATSL  213 (225)
Q Consensus       140 -----~~~~~~~~~~-d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~~~~~~  213 (225)
                           ..+...+... +..+.++||+|+..|+.++++.|+++|++++.+|.+|.||||+|+..|+. .++++|+.+|+..
T Consensus       603 ~~~iv~~L~~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~-~iv~~Ll~~GAdv  681 (823)
T PLN03192        603 HHKIFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHV-DMVRLLIMNGADV  681 (823)
T ss_pred             CHHHHHHHHhcCcccCcccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcH-HHHHHHHHcCCCC
Confidence                 1111111111 13577899999999999999999999999999999999999999999995 6777777777665


Q ss_pred             ch
Q psy10604        214 PC  215 (225)
Q Consensus       214 ~~  215 (225)
                      +.
T Consensus       682 ~~  683 (823)
T PLN03192        682 DK  683 (823)
T ss_pred             CC
Confidence            43

>KOG0508|consensus

Probab=99.87  E-value=4e-22  Score=163.40  Aligned_cols=152  Identities=28%  Similarity=0.368  Sum_probs=107.6

Q ss_pred             hhHHHHHHHHHHHhhhhhccccCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHH
Q psy10604         39 GPAVTKLRQEAKIHNAVISLEPCYDCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKL  118 (225)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv  118 (225)
                      .+.|.++...|.......-.....-...+|-+||-.|+..||+++|+.|+.+|+++|... ..+.|||--||.-|+.+++
T Consensus        55 ~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT-~TNStPLraACfDG~leiv  133 (615)
T KOG0508|consen   55 ADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASVNDTT-RTNSTPLRAACFDGHLEIV  133 (615)
T ss_pred             HHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCcccccc-ccCCccHHHHHhcchhHHH
Confidence            566777666554211111111111234556677777777888888888888888888776 6677888888888888888


Q ss_pred             HHHHHCCCCCCCCCcchhhHHHHhhhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCC
Q psy10604        119 RELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSL  198 (225)
Q Consensus       119 ~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~  198 (225)
                      ++|+++|++++..+.                  .|.|.||+||.+|+.+++++|++.|+|++.++..|+|+||.++..|+
T Consensus       134 KyLvE~gad~~Ianr------------------hGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~  195 (615)
T KOG0508|consen  134 KYLVEHGADPEIANR------------------HGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGS  195 (615)
T ss_pred             HHHHHcCCCCccccc------------------CCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhhhccc
Confidence            888888888887775                  77888888888888888888888888888888888888888888888


Q ss_pred             hHHHHHHHhhcC
Q psy10604        199 VTDIASSAITDA  210 (225)
Q Consensus       199 ~~~i~~~l~~~~  210 (225)
                      . .|+++|+.++
T Consensus       196 v-divq~Ll~~g  206 (615)
T KOG0508|consen  196 V-DIVQLLLKHG  206 (615)
T ss_pred             H-HHHHHHHhCC
Confidence            6 4555555544

>KOG0502|consensus

Probab=99.87  E-value=1.2e-22  Score=151.80  Aligned_cols=120  Identities=26%  Similarity=0.332  Sum_probs=114.9

Q ss_pred             CcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHH
Q psy10604         61 CYDCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDN  140 (225)
Q Consensus        61 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~  140 (225)
                      ...+++.|.|||+||+..|++++|++||+.|+|++... .+..++|.+|++.|..+||++|+.++.++|..|.       
T Consensus       153 VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lg-k~resALsLAt~ggytdiV~lLL~r~vdVNvyDw-------  224 (296)
T KOG0502|consen  153 VNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALG-KYRESALSLATRGGYTDIVELLLTREVDVNVYDW-------  224 (296)
T ss_pred             ccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhh-hhhhhhHhHHhcCChHHHHHHHHhcCCCcceecc-------
Confidence            44578999999999999999999999999999999998 8889999999999999999999999999999997       


Q ss_pred             HhhhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCh
Q psy10604        141 QLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLV  199 (225)
Q Consensus       141 ~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~  199 (225)
                                 +|.|||-+|++.++.+|++.|+..|++++..+..|+++++.|+..|+-
T Consensus       225 -----------NGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~dsGy~~mdlAValGyr  272 (296)
T KOG0502|consen  225 -----------NGGTPLLYAVRGNHVKCVESLLNSGADVTQEDDSGYWIMDLAVALGYR  272 (296)
T ss_pred             -----------CCCceeeeeecCChHHHHHHHHhcCCCcccccccCCcHHHHHHHhhhH
Confidence                       899999999999999999999999999999999999999999999994

>PHA03095 ankyrin-like protein; Provisional

Probab=99.87  E-value=4e-21  Score=165.98  Aligned_cols=131  Identities=24%  Similarity=0.239  Sum_probs=108.0

Q ss_pred             ccCCCCchHHHHHHHcC---CHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcC-CHHHHHHHHHCCCCCCCCCcchhhH
Q psy10604         63 DCYSDPNTSFLRAARAG---HLDKLRELLEAGVDINTSNASDPNTSFLRAARAG-HLDKLRELLEAGVDINTSNATSKKL  138 (225)
Q Consensus        63 ~~~~~g~t~L~~A~~~g---~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~-~~~iv~~Ll~~g~~~~~~~~~~~~~  138 (225)
                      ..+..|.||||+|+..|   +.+++++|++.|++++..+ ..|.||||+|+..| +.+++++|++.|++++.++.     
T Consensus        42 ~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~-~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~-----  115 (471)
T PHA03095         42 FRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPE-RCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDK-----  115 (471)
T ss_pred             cCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCC-CCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCC-----
Confidence            34677999999999998   9999999999999999999 79999999999999 59999999999999999886     


Q ss_pred             HHHhhhhhhccCCCCCcHHHHHH--HcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCh-HHHHHHHhhcCCC
Q psy10604        139 DNQLNIHQKNIKNNGLNALHLAA--KDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLV-TDIASSAITDATS  212 (225)
Q Consensus       139 ~~~~~~~~~~~d~~g~t~L~~A~--~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~-~~i~~~l~~~~~~  212 (225)
                                   .|+||||+|+  ..++.+++++|+++|++++.+|..|.||||+|+..++. ..++++|+..|+.
T Consensus       116 -------------~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~  179 (471)
T PHA03095        116 -------------VGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGAD  179 (471)
T ss_pred             -------------CCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCC
Confidence                         7888888887  44567888888888888888888888888877766532 2455555555443

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.87  E-value=3e-21  Score=167.20  Aligned_cols=131  Identities=23%  Similarity=0.378  Sum_probs=108.0

Q ss_pred             cCCCCchHHHH-----HHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHH--HcCCHHHHHHHHHCCCCCCCCCcchh
Q psy10604         64 CYSDPNTSFLR-----AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAA--RAGHLDKLRELLEAGVDINTSNATSK  136 (225)
Q Consensus        64 ~~~~g~t~L~~-----A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~--~~~~~~iv~~Ll~~g~~~~~~~~~~~  136 (225)
                      .+..+.||||+     |+..|+.+++++|++.|++++..+ ..|.||||+|+  ..|+.+++++|++.|++++..+.   
T Consensus        64 ~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d-~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~---  139 (480)
T PHA03100         64 STKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPD-NNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNS---  139 (480)
T ss_pred             ccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCC-CCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCC---
Confidence            34556777887     777788888888888887777766 67778888887  77778888888877777777664   


Q ss_pred             hHHHHhhhhhhccCCCCCcHHHHHHHcC--CHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHHhhcCCCCc
Q psy10604        137 KLDNQLNIHQKNIKNNGLNALHLAAKDG--HTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAITDATSLP  214 (225)
Q Consensus       137 ~~~~~~~~~~~~~d~~g~t~L~~A~~~~--~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~~~~~~~  214 (225)
                                     .|.||||+|+..+  +.+++++|+++|++++.++..|.||||+|+..|+. .++++|+..|+..+
T Consensus       140 ---------------~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~-~iv~~Ll~~ga~~~  203 (480)
T PHA03100        140 ---------------DGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNI-DVIKFLLDNGADIN  203 (480)
T ss_pred             ---------------CCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCH-HHHHHHHHcCCCcc
Confidence                           8999999999999  99999999999999999999999999999999995 67777777666554

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.87  E-value=2.6e-21  Score=149.87  Aligned_cols=113  Identities=12%  Similarity=0.188  Sum_probs=102.8

Q ss_pred             CCCchHHHHHHHc---CCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHc--CCHHHHHHHHHCCCCCCCCCcchhhHHH
Q psy10604         66 SDPNTSFLRAARA---GHLDKLRELLEAGVDINTSNASDPNTSFLRAARA--GHLDKLRELLEAGVDINTSNATSKKLDN  140 (225)
Q Consensus        66 ~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~--~~~~iv~~Ll~~g~~~~~~~~~~~~~~~  140 (225)
                      ..|.||||+|+..   ++.+++++|+++|++++.++ ..|.||||+|+..  ++.+++++|++.|++++.++.       
T Consensus        85 ~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d-~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~-------  156 (209)
T PHA02859         85 DNNLSALHHYLSFNKNVEPEILKILIDSGSSITEED-EDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDF-------  156 (209)
T ss_pred             CCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCcC-CCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccC-------
Confidence            4789999998864   47999999999999999998 8999999999874  689999999999999999886       


Q ss_pred             HhhhhhhccCCCCCcHHHH-HHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcC
Q psy10604        141 QLNIHQKNIKNNGLNALHL-AAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDS  197 (225)
Q Consensus       141 ~~~~~~~~~d~~g~t~L~~-A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~  197 (225)
                                 .|.||||. ++..++.+++++|+++|++++.+|..|.||||+|...+
T Consensus       157 -----------~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        157 -----------DNNNILYSYILFHSDKKIFDFLTSLGIDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             -----------CCCcHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhhh
Confidence                       99999995 56788999999999999999999999999999999754

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.87  E-value=3.2e-21  Score=171.42  Aligned_cols=147  Identities=18%  Similarity=0.154  Sum_probs=115.4

Q ss_pred             CCCCchHHHHHHHc--CCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCC--HHHHHHHHHCCCCCCCCCcchhhHH-
Q psy10604         65 YSDPNTSFLRAARA--GHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGH--LDKLRELLEAGVDINTSNATSKKLD-  139 (225)
Q Consensus        65 ~~~g~t~L~~A~~~--g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~--~~iv~~Ll~~g~~~~~~~~~~~~~~-  139 (225)
                      +..|.||||+|+..  ++.+++++|+++|++++..+ ..|.||||+|+..|+  .+++++|++.|++++.++..+...+ 
T Consensus       174 d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD-~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh  252 (764)
T PHA02716        174 KKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQN-NHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIM  252 (764)
T ss_pred             CCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCC-CCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHH
Confidence            67799999987643  57899999999999999988 789999999999985  4899999999999988765332211 


Q ss_pred             ------------------------------------------------HHhhhhhh---ccCCCCCcHHHHHHH--cCCH
Q psy10604        140 ------------------------------------------------NQLNIHQK---NIKNNGLNALHLAAK--DGHT  166 (225)
Q Consensus       140 ------------------------------------------------~~~~~~~~---~~d~~g~t~L~~A~~--~~~~  166 (225)
                                                                      +.+...+.   ..|..|+||||+|+.  .++.
T Consensus       253 ~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~  332 (764)
T PHA02716        253 TYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNIST  332 (764)
T ss_pred             HHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCc
Confidence                                                            11222222   246789999999865  4578


Q ss_pred             HHHHHHHHCCCCCCCCCCCCChHHHHHHHc--------------CChHHHHHHHhhcCCCC
Q psy10604        167 TVVKALLKGGCKVDASTKKGNTALHIAALD--------------SLVTDIASSAITDATSL  213 (225)
Q Consensus       167 ~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~--------------~~~~~i~~~l~~~~~~~  213 (225)
                      +++++|+++|++++.+|..|+||||+|+..              ++ ..++++|+..|+.+
T Consensus       333 eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~-~eVVklLL~~GADI  392 (764)
T PHA02716        333 DIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIR-LDVIQCLISLGADI  392 (764)
T ss_pred             hHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccccccccCh-HHHHHHHHHCCCCC
Confidence            999999999999999999999999998752              45 36777887877665

>PHA03095 ankyrin-like protein; Provisional

Probab=99.87  E-value=7.9e-21  Score=164.16  Aligned_cols=147  Identities=20%  Similarity=0.239  Sum_probs=102.9

Q ss_pred             cCCCCchHHHHHHHcC--CHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHc--CCHHHHHHHHHCCCCCCCCCcchhhHH
Q psy10604         64 CYSDPNTSFLRAARAG--HLDKLRELLEAGVDINTSNASDPNTSFLRAARA--GHLDKLRELLEAGVDINTSNATSKKLD  139 (225)
Q Consensus        64 ~~~~g~t~L~~A~~~g--~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~--~~~~iv~~Ll~~g~~~~~~~~~~~~~~  139 (225)
                      .+..|.||||+|+..+  +.+++++|++.|++++..+ ..|.||||+|+..  +..+++++|++.|++++.++..+...+
T Consensus       148 ~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d-~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpL  226 (471)
T PHA03095        148 LDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVD-DRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPL  226 (471)
T ss_pred             cCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccC-CCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHH
Confidence            3556677777666654  4566777777777766665 6677777766654  456667777777777666655332222


Q ss_pred             H--------------Hhhhhh---hccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHH
Q psy10604        140 N--------------QLNIHQ---KNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDI  202 (225)
Q Consensus       140 ~--------------~~~~~~---~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i  202 (225)
                      .              .+...+   +..|..|+||||+|+..|+.+++++|+.+|++++.+|..|.||||+|+..|+.+. 
T Consensus       227 h~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~~~~g~tpl~~A~~~~~~~~-  305 (471)
T PHA03095        227 HSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVRNNNGRA-  305 (471)
T ss_pred             HHHHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCCHHH-
Confidence            1              111112   2234689999999999999999999999999999999999999999999999654 


Q ss_pred             HHHHhhcCCC
Q psy10604        203 ASSAITDATS  212 (225)
Q Consensus       203 ~~~l~~~~~~  212 (225)
                      +..|+..+..
T Consensus       306 v~~LL~~~~~  315 (471)
T PHA03095        306 VRAALAKNPS  315 (471)
T ss_pred             HHHHHHhCCC
Confidence            4444444433

>KOG0514|consensus

Probab=99.87  E-value=3.6e-22  Score=158.95  Aligned_cols=125  Identities=32%  Similarity=0.481  Sum_probs=92.9

Q ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHHcCC-CCCCCCC-------------------------------------CCCCCH
Q psy10604         64 CYSDPNTSFLRAARAGHLDKLRELLEAGV-DINTSNA-------------------------------------SDPNTS  105 (225)
Q Consensus        64 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~-------------------------------------~~g~t~  105 (225)
                      .+.+|+|+||||+.++|+++|+.||+.|. +++..+.                                     ..|+|+
T Consensus       264 aDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnVNaKAsQ~gQTA  343 (452)
T KOG0514|consen  264 ADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDVNAKASQHGQTA  343 (452)
T ss_pred             hcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCcchhhhhhcchh
Confidence            57999999999999999999999999873 4444441                                     356777


Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhhhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHC-CCCCCCCCC
Q psy10604        106 FLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKG-GCKVDASTK  184 (225)
Q Consensus       106 Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~-ga~~~~~d~  184 (225)
                      |++|+.+|+.++|+.|+..|+++|.+|.                  +|.|+|+.|+++|+.+++++|+.. ++|+...|.
T Consensus       344 LMLAVSHGr~d~vk~LLacgAdVNiQDd------------------DGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~  405 (452)
T KOG0514|consen  344 LMLAVSHGRVDMVKALLACGADVNIQDD------------------DGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDV  405 (452)
T ss_pred             hhhhhhcCcHHHHHHHHHccCCCccccC------------------CccHHHhhhhhhChHHHHHHHhccCcccceeecC
Confidence            7777777777777777777777777775                  777777777777777777777755 677777777


Q ss_pred             CCChHHHHHHHcCChHHHHHHHh
Q psy10604        185 KGNTALHIAALDSLVTDIASSAI  207 (225)
Q Consensus       185 ~g~tpL~~A~~~~~~~~i~~~l~  207 (225)
                      +|.|+|.+|...|+ .+|+..|.
T Consensus       406 DgSTAl~IAleagh-~eIa~mlY  427 (452)
T KOG0514|consen  406 DGSTALSIALEAGH-REIAVMLY  427 (452)
T ss_pred             CCchhhhhHHhcCc-hHHHHHHH
Confidence            77777777777777 34554443

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.87  E-value=4.4e-21  Score=170.50  Aligned_cols=135  Identities=21%  Similarity=0.244  Sum_probs=108.9

Q ss_pred             HcCCHHHHHHHHHcC-CCCCCC-CCCCCCCHHHHHHH--cCCHHHHHHHHHCCCCCCCCCcchh--------------hH
Q psy10604         77 RAGHLDKLRELLEAG-VDINTS-NASDPNTSFLRAAR--AGHLDKLRELLEAGVDINTSNATSK--------------KL  138 (225)
Q Consensus        77 ~~g~~~~v~~Ll~~g-~~~~~~-~~~~g~t~Lh~A~~--~~~~~iv~~Ll~~g~~~~~~~~~~~--------------~~  138 (225)
                      +.++.+++++|++.| ++++.. + ..|.||||+|+.  +++.+++++|++.|++++.++..+.              +.
T Consensus       151 ~~v~leiVk~LLe~G~ADIN~~~d-~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eI  229 (764)
T PHA02716        151 RGIDLDLIKYMVDVGIVNLNYVCK-KTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASV  229 (764)
T ss_pred             cCCCHHHHHHHHHCCCCCcccccC-CCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHH
Confidence            458999999999999 999998 5 889999999865  4678999999999999998876332              23


Q ss_pred             HHHhhhhhhcc---CCCCCcHHHHH-------------------------------------HHcCCHHHHHHHHHCCCC
Q psy10604        139 DNQLNIHQKNI---KNNGLNALHLA-------------------------------------AKDGHTTVVKALLKGGCK  178 (225)
Q Consensus       139 ~~~~~~~~~~~---d~~g~t~L~~A-------------------------------------~~~~~~~~~~~Ll~~ga~  178 (225)
                      ...+...|+++   |..|+||||+|                                     +..|+.+++++|+++|++
T Consensus       230 VklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAd  309 (764)
T PHA02716        230 IKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVK  309 (764)
T ss_pred             HHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCc
Confidence            44455555554   57899999975                                     345778999999999999


Q ss_pred             CCCCCCCCChHHHHHHH--cCChHHHHHHHhhcCCCC
Q psy10604        179 VDASTKKGNTALHIAAL--DSLVTDIASSAITDATSL  213 (225)
Q Consensus       179 ~~~~d~~g~tpL~~A~~--~~~~~~i~~~l~~~~~~~  213 (225)
                      ++.+|..|+||||+|+.  .++. .++++|+..|+.+
T Consensus       310 IN~kD~~G~TPLH~Aaa~~~~~~-eIVklLLe~GADI  345 (764)
T PHA02716        310 LHYKDSAGRTCLHQYILRHNIST-DIIKLLHEYGNDL  345 (764)
T ss_pred             eeccCCCCCCHHHHHHHHhCCCc-hHHHHHHHcCCCC
Confidence            99999999999999864  3453 5777887777665

>KOG0512|consensus

Probab=99.86  E-value=2.4e-21  Score=139.81  Aligned_cols=123  Identities=34%  Similarity=0.422  Sum_probs=101.9

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhhhh
Q psy10604         67 DPNTSFLRAARAGHLDKLRELLEAGVD-INTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIH  145 (225)
Q Consensus        67 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~~~  145 (225)
                      +..-.+.+|+..+.+..|+.||+..++ +|.++ .+|+||||.|+++|+.+|++.|+..|++++.+..            
T Consensus        62 dp~rl~lwaae~nrl~eV~~lL~e~an~vNtrD-~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~------------  128 (228)
T KOG0512|consen   62 DPIRLLLWAAEKNRLTEVQRLLSEKANHVNTRD-EDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTN------------  128 (228)
T ss_pred             CHHHHHHHHHhhccHHHHHHHHHhccccccccc-cccccHHHHHHhcCchHHHHHHHHccCCcccccc------------
Confidence            344557888999999899988887665 56777 8899999999999999999999999999888875            


Q ss_pred             hhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHHhh
Q psy10604        146 QKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAIT  208 (225)
Q Consensus       146 ~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~  208 (225)
                            .||||||.||.-.+.+++..|+.+|+|++.......||||+|+...+.-.-+.+|+.
T Consensus       129 ------~GWTPLhSAckWnN~~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~  185 (228)
T KOG0512|consen  129 ------EGWTPLHSACKWNNFEVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLH  185 (228)
T ss_pred             ------cCccchhhhhcccchhHHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhh
Confidence                  899999999998899999999999999999988889999999888775555555544

>PHA02917 ankyrin-like protein; Provisional

Probab=99.86  E-value=1.2e-20  Score=167.60  Aligned_cols=146  Identities=19%  Similarity=0.188  Sum_probs=98.5

Q ss_pred             cCCCCchHHHHHHHc---CCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcC---------------------------
Q psy10604         64 CYSDPNTSFLRAARA---GHLDKLRELLEAGVDINTSNASDPNTSFLRAARAG---------------------------  113 (225)
Q Consensus        64 ~~~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~---------------------------  113 (225)
                      .+.+|+||||+|+..   |+.++|++|++.|++++..+ ..|.||||+|+.+|                           
T Consensus        28 ~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~-~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~~~~  106 (661)
T PHA02917         28 RNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKN-WRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDFNIF  106 (661)
T ss_pred             cCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccC-CCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCcchH
Confidence            355666777765443   56677777777777766665 66667766665543                           


Q ss_pred             --------CHHHHHHHHHCCCCCCCCCcchh--------------hHHHHhhhhhhccC------CCC-----------C
Q psy10604        114 --------HLDKLRELLEAGVDINTSNATSK--------------KLDNQLNIHQKNIK------NNG-----------L  154 (225)
Q Consensus       114 --------~~~iv~~Ll~~g~~~~~~~~~~~--------------~~~~~~~~~~~~~d------~~g-----------~  154 (225)
                              +.+++++|++.|++++.++..+.              +..+.+...|++++      ..|           .
T Consensus       107 ~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~  186 (661)
T PHA02917        107 SYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCG  186 (661)
T ss_pred             HHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccccccccc
Confidence                    33455666666666666553221              23333444444331      123           5


Q ss_pred             cHHHHHHH-----------cCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChH-HHHHHHhhcC
Q psy10604        155 NALHLAAK-----------DGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVT-DIASSAITDA  210 (225)
Q Consensus       155 t~L~~A~~-----------~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~-~i~~~l~~~~  210 (225)
                      ||||+|+.           .++.+++++|+++|++++.+|..|.||||+|+..|+.+ .++++|+.++
T Consensus       187 t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~g~  254 (661)
T PHA02917        187 TVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMKGI  254 (661)
T ss_pred             cHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHhCC
Confidence            99999976           45889999999999999999999999999999999864 5777777754

>KOG0508|consensus

Probab=99.86  E-value=1.4e-21  Score=160.23  Aligned_cols=128  Identities=33%  Similarity=0.466  Sum_probs=116.3

Q ss_pred             cCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHH
Q psy10604         60 PCYDCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLD  139 (225)
Q Consensus        60 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~  139 (225)
                      ...+.+....|||-.||..|+.++|+||+++|+|++..+ ..|.|.||+||..|+.+|+++|++.|++++.++.      
T Consensus       109 ~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~Ian-rhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~------  181 (615)
T KOG0508|consen  109 SVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIAN-RHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSY------  181 (615)
T ss_pred             ccccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccc-cCCCeeEEeeeccCchHHHHHHHHhCCCcchhcc------
Confidence            344456667799999999999999999999999999998 9999999999999999999999999999999986      


Q ss_pred             HHhhhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHHhh
Q psy10604        140 NQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAIT  208 (225)
Q Consensus       140 ~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~  208 (225)
                                  .|+|+||.|++.|+.+++++|+++|+.+. .|..|.|||..|+..|+. .++..|++
T Consensus       182 ------------kGNTALH~caEsG~vdivq~Ll~~ga~i~-~d~~GmtPL~~Aa~tG~~-~iVe~L~~  236 (615)
T KOG0508|consen  182 ------------KGNTALHDCAESGSVDIVQLLLKHGAKID-VDGHGMTPLLLAAVTGHT-DIVERLLQ  236 (615)
T ss_pred             ------------cCchHHHhhhhcccHHHHHHHHhCCceee-ecCCCCchHHHHhhhcch-HHHHHHhc
Confidence                        99999999999999999999999999986 566699999999999996 55556554

>KOG0510|consensus

Probab=99.86  E-value=3e-21  Score=167.05  Aligned_cols=130  Identities=33%  Similarity=0.444  Sum_probs=114.3

Q ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-CCC-CCCCCCcchhhHHHH
Q psy10604         64 CYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLE-AGV-DINTSNATSKKLDNQ  141 (225)
Q Consensus        64 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~-~g~-~~~~~~~~~~~~~~~  141 (225)
                      .+.+|.||||+|++.|+++.+..|+..|++++.++ .++.||||.|+++|+.+.++.|++ .|. ..+..|         
T Consensus       269 ~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn-~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D---------  338 (929)
T KOG0510|consen  269 EDNDGCTPLHYAARQGGPESVDNLLGFGASINSKN-KDEESPLHFAAIYGRINTVERLLQESDTRLLNESD---------  338 (929)
T ss_pred             ccccCCchHHHHHHcCChhHHHHHHHcCCcccccC-CCCCCchHHHHHcccHHHHHHHHhCcCcccccccc---------
Confidence            57899999999999999999999999999999998 899999999999999999999998 332 233344         


Q ss_pred             hhhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCC---CCCCCCChHHHHHHHcCChHHHHHHHhhcCCCC
Q psy10604        142 LNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVD---ASTKKGNTALHIAALDSLVTDIASSAITDATSL  213 (225)
Q Consensus       142 ~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~---~~d~~g~tpL~~A~~~~~~~~i~~~l~~~~~~~  213 (225)
                               -.|.||||+|+..|+..++++|+..|+...   ..|.+|.||||.|+..|+. ..++.|+.+|+.+
T Consensus       339 ---------~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~-~av~~Li~~Ga~I  403 (929)
T KOG0510|consen  339 ---------LHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNT-SAVQKLISHGADI  403 (929)
T ss_pred             ---------ccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccH-HHHHHHHHcCCce
Confidence                     489999999999999999999999999987   4599999999999999996 5555566666655

>PHA02946 ankyin-like protein; Provisional

Probab=99.86  E-value=1.1e-20  Score=161.73  Aligned_cols=149  Identities=13%  Similarity=0.237  Sum_probs=120.4

Q ss_pred             ccCCCCchHHHHHHHcC--CHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhH--
Q psy10604         63 DCYSDPNTSFLRAARAG--HLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKL--  138 (225)
Q Consensus        63 ~~~~~g~t~L~~A~~~g--~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~--  138 (225)
                      ..+..|.||||+|+..+  ..+++++|++.|++++...+..|.|||| |+..++.+++++|++.|++++.++..+...  
T Consensus       100 ~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh  178 (446)
T PHA02946        100 ACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIH  178 (446)
T ss_pred             CCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHH
Confidence            36788999999998876  4789999999999998643378999997 667799999999999999998887644322  


Q ss_pred             ------------HHHhhhhhh---ccCCCCCcHHHHHHHcC--CHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHH
Q psy10604        139 ------------DNQLNIHQK---NIKNNGLNALHLAAKDG--HTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTD  201 (225)
Q Consensus       139 ------------~~~~~~~~~---~~d~~g~t~L~~A~~~~--~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~  201 (225)
                                  ...+...+.   ..|..|+||||+|+..+  +.+++++|+. |++++.+|..|.||||+|+..++...
T Consensus       179 ~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gadin~~d~~G~TpLh~A~~~~~~~~  257 (446)
T PHA02946        179 RHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-STDVNKQNKFGDSPLTLLIKTLSPAH  257 (446)
T ss_pred             HHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHhCChHH
Confidence                        223333333   34689999999999986  7899999984 89999999999999999999998767


Q ss_pred             HHHHHhhcCCCC
Q psy10604        202 IASSAITDATSL  213 (225)
Q Consensus       202 i~~~l~~~~~~~  213 (225)
                      ++++|+..+...
T Consensus       258 ~~~~Ll~~g~~~  269 (446)
T PHA02946        258 LINKLLSTSNVI  269 (446)
T ss_pred             HHHHHHhCCCCC
Confidence            777777766543

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.85  E-value=2.6e-20  Score=167.66  Aligned_cols=132  Identities=23%  Similarity=0.207  Sum_probs=74.4

Q ss_pred             CCCCchHHHHHHHcC-CHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhh------
Q psy10604         65 YSDPNTSFLRAARAG-HLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKK------  137 (225)
Q Consensus        65 ~~~g~t~L~~A~~~g-~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~------  137 (225)
                      +..|.||||+|+..+ +.++++.|++.|++++.++ ..|.||||+|+..|+.+++++|++.|++++..+..+..      
T Consensus       338 d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d-~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~  416 (682)
T PHA02876        338 DRLYITPLHQASTLDRNKDIVITLLELGANVNARD-YCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFAL  416 (682)
T ss_pred             ccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCC-CCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHH
Confidence            445556666665533 4566666666666666666 66777777777777777777777777776655442111      


Q ss_pred             -------HHHHhhhhh---hccCCCCCcHHHHHHHcC-CHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcC
Q psy10604        138 -------LDNQLNIHQ---KNIKNNGLNALHLAAKDG-HTTVVKALLKGGCKVDASTKKGNTALHIAALDS  197 (225)
Q Consensus       138 -------~~~~~~~~~---~~~d~~g~t~L~~A~~~~-~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~  197 (225)
                             ....+...+   +.+|..|+||||+|+..+ +.+++++|+++|++++.+|..|.|||++|+..+
T Consensus       417 ~~~~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~n~~d~~g~tpl~~a~~~~  487 (682)
T PHA02876        417 CGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINIQNQYPLLIALEYH  487 (682)
T ss_pred             HcCCHHHHHHHHHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhC
Confidence                   111222222   223455556666655544 455556666666666655666666665555443

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.85  E-value=2.4e-20  Score=125.07  Aligned_cols=89  Identities=44%  Similarity=0.633  Sum_probs=81.5

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhhhhhhccCC
Q psy10604         72 FLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKN  151 (225)
Q Consensus        72 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~d~  151 (225)
                      ||+|++.|+.+++++|++.+.+++.     |.||||+|+..|+.+++++|++.|++++.++.                  
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~-----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~------------------   57 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL-----GNTALHYAAENGNLEIVKLLLENGADINSQDK------------------   57 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS-----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BST------------------
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC-----CCCHHHHHHHcCCHHHHHHHHHhcccccccCC------------------
Confidence            7999999999999999999988765     78999999999999999999999999999885                  


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC
Q psy10604        152 NGLNALHLAAKDGHTTVVKALLKGGCKVDAST  183 (225)
Q Consensus       152 ~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d  183 (225)
                      .|+||||+|+..|+.+++++|+++|++++.+|
T Consensus        58 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   58 NGNTALHYAAENGNLEIVKLLLEHGADVNIRN   89 (89)
T ss_dssp             TSSBHHHHHHHTTHHHHHHHHHHTTT-TTSS-
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC
Confidence            99999999999999999999999999999875

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0512|consensus

Probab=99.84  E-value=3.6e-20  Score=133.78  Aligned_cols=121  Identities=27%  Similarity=0.327  Sum_probs=107.4

Q ss_pred             CcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHH
Q psy10604         61 CYDCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDN  140 (225)
Q Consensus        61 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~  140 (225)
                      ....+.+|+||||.|+.+|+.++|+.|+..|++++.+. ..|+||||-||...+.+++.+|+++|++++....       
T Consensus        90 vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T-~~GWTPLhSAckWnN~~va~~LLqhgaDVnA~t~-------  161 (228)
T KOG0512|consen   90 VNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKT-NEGWTPLHSACKWNNFEVAGRLLQHGADVNAQTK-------  161 (228)
T ss_pred             ccccccccccHHHHHHhcCchHHHHHHHHccCCccccc-ccCccchhhhhcccchhHHHHHHhccCccccccc-------
Confidence            44468999999999999999999999999999999998 8999999999999999999999999999999885       


Q ss_pred             HhhhhhhccCCCCCcHHHHHHHcCC-HHHHHHHHH-CCCCCCCCCCCCChHHHHHHHcCChH
Q psy10604        141 QLNIHQKNIKNNGLNALHLAAKDGH-TTVVKALLK-GGCKVDASTKKGNTALHIAALDSLVT  200 (225)
Q Consensus       141 ~~~~~~~~~d~~g~t~L~~A~~~~~-~~~~~~Ll~-~ga~~~~~d~~g~tpL~~A~~~~~~~  200 (225)
                                 ..+||||+|+...+ ...+.+|+. .+.++...+..+.||+.+|-+.+-..
T Consensus       162 -----------g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~~s~  212 (228)
T KOG0512|consen  162 -----------GLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTSMSH  212 (228)
T ss_pred             -----------ccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhhhhH
Confidence                       77899999988765 455666664 48888999999999999999876543

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.84  E-value=9.9e-20  Score=158.27  Aligned_cols=147  Identities=20%  Similarity=0.155  Sum_probs=94.9

Q ss_pred             cCCCCchHHHHHHHc---CCHHHHHHHHHcCCCC-CCCCCCCCCCHHHHHHHc--CCHHHHHHHHHCCCCCCCC-Ccc--
Q psy10604         64 CYSDPNTSFLRAARA---GHLDKLRELLEAGVDI-NTSNASDPNTSFLRAARA--GHLDKLRELLEAGVDINTS-NAT--  134 (225)
Q Consensus        64 ~~~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~-~~~~~~~g~t~Lh~A~~~--~~~~iv~~Ll~~g~~~~~~-~~~--  134 (225)
                      .+..|.||||.|+..   |+.+++++|+++|+++ +..+ ..|.||||+|+..  ++.+++++|++.|++++.. +..  
T Consensus       104 ~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d-~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~  182 (494)
T PHA02989        104 KTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKN-SRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGL  182 (494)
T ss_pred             CCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccC-CCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCC
Confidence            456778888877654   5678888888888888 5666 7788888887654  5778888888888887762 220  


Q ss_pred             --------------hhhHHHHhhhhhhcc---CCCCCcHHHHHHHc------CCHHHHHHHHHCCCCCCCCCCCCChHHH
Q psy10604        135 --------------SKKLDNQLNIHQKNI---KNNGLNALHLAAKD------GHTTVVKALLKGGCKVDASTKKGNTALH  191 (225)
Q Consensus       135 --------------~~~~~~~~~~~~~~~---d~~g~t~L~~A~~~------~~~~~~~~Ll~~ga~~~~~d~~g~tpL~  191 (225)
                                    ..+..+++...|.++   +..+.||||.+...      +..+++++|+ .|++++.+|..|+||||
T Consensus       183 tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~-~~advn~~d~~G~TpL~  261 (494)
T PHA02989        183 TPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFIL-KYIKINKKDKKGFNPLL  261 (494)
T ss_pred             ChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHH-hCCCCCCCCCCCCCHHH
Confidence                          112233333333332   23355555554432      2344445443 34666777888999999


Q ss_pred             HHHHcCChHHHHHHHhhcCCCC
Q psy10604        192 IAALDSLVTDIASSAITDATSL  213 (225)
Q Consensus       192 ~A~~~~~~~~i~~~l~~~~~~~  213 (225)
                      +|+..|+. .++++|+..|+++
T Consensus       262 ~Aa~~~~~-~~v~~LL~~Gadi  282 (494)
T PHA02989        262 ISAKVDNY-EAFNYLLKLGDDI  282 (494)
T ss_pred             HHHHhcCH-HHHHHHHHcCCCc
Confidence            99999996 5666666766655

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.84  E-value=1.3e-19  Score=163.16  Aligned_cols=143  Identities=24%  Similarity=0.276  Sum_probs=78.0

Q ss_pred             CCCCchHHHHHHHcCCH-HHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcC-CHHHHHHHHHCCCCCCCCCcchhhHH---
Q psy10604         65 YSDPNTSFLRAARAGHL-DKLRELLEAGVDINTSNASDPNTSFLRAARAG-HLDKLRELLEAGVDINTSNATSKKLD---  139 (225)
Q Consensus        65 ~~~g~t~L~~A~~~g~~-~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~-~~~iv~~Ll~~g~~~~~~~~~~~~~~---  139 (225)
                      +..|.||||+|+..|+. +++++|++.|++++..+ ..|.||||+|+..| ..+++++|+..|++++..+..+...+   
T Consensus       270 d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d-~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A  348 (682)
T PHA02876        270 DDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKN-IKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQA  348 (682)
T ss_pred             CCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcC-CCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHH
Confidence            44566777777766664 46666666676666666 56667777766666 46666666666666665554222111   


Q ss_pred             ----------HHhhhhh---hccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHH
Q psy10604        140 ----------NQLNIHQ---KNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSA  206 (225)
Q Consensus       140 ----------~~~~~~~---~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l  206 (225)
                                ..+...+   +..|..|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++...++++|
T Consensus       349 ~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~L  428 (682)
T PHA02876        349 STLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTL  428 (682)
T ss_pred             HHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHHHHHHHH
Confidence                      1111111   223455666666666666666555555555555444444444444444433333333333


Q ss_pred             hh
Q psy10604        207 IT  208 (225)
Q Consensus       207 ~~  208 (225)
                      +.
T Consensus       429 l~  430 (682)
T PHA02876        429 ID  430 (682)
T ss_pred             Hh
Confidence            33

>PHA02798 ankyrin-like protein; Provisional

Probab=99.84  E-value=8.7e-20  Score=158.42  Aligned_cols=131  Identities=24%  Similarity=0.331  Sum_probs=114.6

Q ss_pred             cCCCCchHHHHHHHc-----CCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcC---CHHHHHHHHHCCCCCCCCCcch
Q psy10604         64 CYSDPNTSFLRAARA-----GHLDKLRELLEAGVDINTSNASDPNTSFLRAARAG---HLDKLRELLEAGVDINTSNATS  135 (225)
Q Consensus        64 ~~~~g~t~L~~A~~~-----g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~---~~~iv~~Ll~~g~~~~~~~~~~  135 (225)
                      .+..|.||||.|+..     +..+++++|+++|++++..+ ..|.||||+|+..+   +.+++++|++.|++++.++.  
T Consensus        67 ~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d-~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~--  143 (489)
T PHA02798         67 LDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKN-SDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDK--  143 (489)
T ss_pred             CCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCC-CCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCC--
Confidence            568899999998864     67899999999999999998 89999999999975   78999999999999999886  


Q ss_pred             hhHHHHhhhhhhccCCCCCcHHHHHHHcCC---HHHHHHHHHCCCCCCCCC-CCCChHHHHHHHcC----ChHHHHHHHh
Q psy10604        136 KKLDNQLNIHQKNIKNNGLNALHLAAKDGH---TTVVKALLKGGCKVDAST-KKGNTALHIAALDS----LVTDIASSAI  207 (225)
Q Consensus       136 ~~~~~~~~~~~~~~d~~g~t~L~~A~~~~~---~~~~~~Ll~~ga~~~~~d-~~g~tpL~~A~~~~----~~~~i~~~l~  207 (225)
                                      .|.||||+|+..++   .+++++|+++|++++..+ ..|.||||+++..+    + ..++++|+
T Consensus       144 ----------------~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~-~~ivk~Li  206 (489)
T PHA02798        144 ----------------DGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRID-ADILKLFV  206 (489)
T ss_pred             ----------------CCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCC-HHHHHHHH
Confidence                            99999999999987   999999999999999885 57999999987643    4 46788888


Q ss_pred             hcCCCCc
Q psy10604        208 TDATSLP  214 (225)
Q Consensus       208 ~~~~~~~  214 (225)
                      ..|+..+
T Consensus       207 ~~Ga~i~  213 (489)
T PHA02798        207 DNGFIIN  213 (489)
T ss_pred             HCCCCcc
Confidence            8776554

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.83  E-value=9.3e-20  Score=136.29  Aligned_cols=107  Identities=21%  Similarity=0.199  Sum_probs=97.1

Q ss_pred             cCCCCchHHHHHHHcCCHH---HHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCCCcchhhHH
Q psy10604         64 CYSDPNTSFLRAARAGHLD---KLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLE-AGVDINTSNATSKKLD  139 (225)
Q Consensus        64 ~~~~g~t~L~~A~~~g~~~---~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~-~g~~~~~~~~~~~~~~  139 (225)
                      .+..|+||||+|+..|+.+   ++++|++.|++++.++...|.||||+|+..++.+++++|+. .|++++.++.      
T Consensus        53 ~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~------  126 (166)
T PHA02743         53 YDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINY------  126 (166)
T ss_pred             cCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCC------
Confidence            4678999999999998865   48999999999999873479999999999999999999995 7999998885      


Q ss_pred             HHhhhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCh
Q psy10604        140 NQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNT  188 (225)
Q Consensus       140 ~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~t  188 (225)
                                  .|+||||+|+..++.+++++|+.+|++++.++..|..
T Consensus       127 ------------~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~  163 (166)
T PHA02743        127 ------------QHETAYHIAYKMRDRRMMEILRANGAVCDDPLSIGLS  163 (166)
T ss_pred             ------------CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCcc
Confidence                        9999999999999999999999999999999888753

>KOG0510|consensus

Probab=99.83  E-value=1.8e-19  Score=156.17  Aligned_cols=64  Identities=25%  Similarity=0.364  Sum_probs=59.5

Q ss_pred             hhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHHh
Q psy10604        144 IHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAI  207 (225)
Q Consensus       144 ~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~  207 (225)
                      ...++.|++|.||||+|+.+|+.++++.|+..|++++.++.++.||||.|++.|++.++-++|.
T Consensus       264 elv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~  327 (929)
T KOG0510|consen  264 ELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQ  327 (929)
T ss_pred             HHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHh
Confidence            3446668999999999999999999999999999999999999999999999999999888887

>PHA02730 ankyrin-like protein; Provisional

Probab=99.82  E-value=3.4e-19  Score=155.98  Aligned_cols=131  Identities=16%  Similarity=0.167  Sum_probs=112.0

Q ss_pred             CCCCchHHHHHHHcCC----HHHHHHHHHcCC--CCCCCCCCCCCCHHHH---HHHcC---------CHHHHHHHHHCCC
Q psy10604         65 YSDPNTSFLRAARAGH----LDKLRELLEAGV--DINTSNASDPNTSFLR---AARAG---------HLDKLRELLEAGV  126 (225)
Q Consensus        65 ~~~g~t~L~~A~~~g~----~~~v~~Ll~~g~--~~~~~~~~~g~t~Lh~---A~~~~---------~~~iv~~Ll~~g~  126 (225)
                      ...|.||||+|+..++    .+++++|+++|+  +++..+ ..|.||||.   |...+         ..+++++|+.+|+
T Consensus       375 k~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd-~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GA  453 (672)
T PHA02730        375 TTDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVS-NNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYMD  453 (672)
T ss_pred             CCCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccc-cCCCchHhHHHHHHhccccccccchhHHHHHHHHHhccc
Confidence            3679999999998875    899999999997  588887 789999984   33332         2357999999999


Q ss_pred             CCCCCCcchhhHHHHhhhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCC-CCChHHHHHHHc--CChHHHH
Q psy10604        127 DINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTK-KGNTALHIAALD--SLVTDIA  203 (225)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~-~g~tpL~~A~~~--~~~~~i~  203 (225)
                      +++.++.                  .|+||||+|+..++.+++++|+++|++++..|. .|.||||+|+..  ++ ..++
T Consensus       454 DINakD~------------------~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d~~~g~TaL~~Aa~~~~~~-~eIv  514 (672)
T PHA02730        454 DIDMIDN------------------ENKTLLYYAVDVNNIQFARRLLEYGASVNTTSRSIINTAIQKSSYRRENK-TKLV  514 (672)
T ss_pred             chhccCC------------------CCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCCCcCCcCHHHHHHHhhcCc-HHHH
Confidence            9999986                  999999999999999999999999999999997 599999999874  55 5788


Q ss_pred             HHHhhcCCCCch
Q psy10604        204 SSAITDATSLPC  215 (225)
Q Consensus       204 ~~l~~~~~~~~~  215 (225)
                      .+|+..++.+.+
T Consensus       515 ~~LLs~ga~i~~  526 (672)
T PHA02730        515 DLLLSYHPTLET  526 (672)
T ss_pred             HHHHHcCCCHHH
Confidence            888888887743

>KOG4177|consensus

Probab=99.82  E-value=9.4e-20  Score=165.57  Aligned_cols=127  Identities=30%  Similarity=0.401  Sum_probs=106.5

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhhhh
Q psy10604         66 SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIH  145 (225)
Q Consensus        66 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~~~  145 (225)
                      +.+.+++|.|...+....++.+++.|++++.++ ..|.||||.||.+|+.++|++|+++|++++.++.            
T Consensus       505 ~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~-~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~------------  571 (1143)
T KOG4177|consen  505 KKGLTPLHLAADEDTVKVAKILLEHGANVDLRT-GRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDK------------  571 (1143)
T ss_pred             hhccchhhhhhhhhhHHHHHHHhhcCCceehhc-ccccchHHHHHhcCCchHHHHhhhCCccccccCC------------
Confidence            334555555555555555666666677777777 7899999999999999999999999999999885            


Q ss_pred             hhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHHhhcCC
Q psy10604        146 QKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAITDAT  211 (225)
Q Consensus       146 ~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~~~~  211 (225)
                            .|+||||.|+..|+.+|+.+|+++|+++|..|.+|.|||++|+..|+++.+..++..+..
T Consensus       572 ------~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~  631 (1143)
T KOG4177|consen  572 ------LGYTPLHQAAQQGHNDIAELLLKHGASVNAADLDGFTPLHIAVRLGYLSVVKLLKVVTAT  631 (1143)
T ss_pred             ------CCCChhhHHHHcChHHHHHHHHHcCCCCCcccccCcchhHHHHHhcccchhhHHHhccCc
Confidence                  999999999999999999999999999999999999999999999998766666655554

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.81  E-value=2.5e-18  Score=121.39  Aligned_cols=122  Identities=40%  Similarity=0.617  Sum_probs=111.6

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhhh
Q psy10604         65 YSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNI  144 (225)
Q Consensus        65 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~~  144 (225)
                      +..|.||||+|+..|+.+++++|++.+.+.+..+ ..|.||||+|+..+..+++++|+..|+.++..+.           
T Consensus         4 ~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~-~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~-----------   71 (126)
T cd00204           4 DEDGRTPLHLAASNGHLEVVKLLLENGADVNAKD-NDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDK-----------   71 (126)
T ss_pred             CcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccC-CCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCC-----------
Confidence            4679999999999999999999999999988887 8999999999999999999999999988877764           


Q ss_pred             hhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHH
Q psy10604        145 HQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSA  206 (225)
Q Consensus       145 ~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l  206 (225)
                             .|.||+|+|+..++.+++++|+..|.+++..+..|.||+++|...++. .+.++|
T Consensus        72 -------~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~L  125 (126)
T cd00204          72 -------DGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHL-EVVKLL  125 (126)
T ss_pred             -------CCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCH-HHHHHh
Confidence                   889999999999999999999999999999999999999999999885 444443

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PHA02730 ankyrin-like protein; Provisional

Probab=99.81  E-value=6.1e-19  Score=154.44  Aligned_cols=132  Identities=11%  Similarity=0.045  Sum_probs=113.8

Q ss_pred             ccCCCCchHHHHHHHcC---CHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcC--CHHHHHHHHHCCCCC--CCCCcch
Q psy10604         63 DCYSDPNTSFLRAARAG---HLDKLRELLEAGVDINTSNASDPNTSFLRAARAG--HLDKLRELLEAGVDI--NTSNATS  135 (225)
Q Consensus        63 ~~~~~g~t~L~~A~~~g---~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~--~~~iv~~Ll~~g~~~--~~~~~~~  135 (225)
                      ..+.+|+||||+|+..|   +.++|++|+++|++++.++ ..|.||||+|+..+  +.+++++|++.|++.  +..+   
T Consensus        36 ~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD-~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~---  111 (672)
T PHA02730         36 HIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVERLCRN-NEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTS---  111 (672)
T ss_pred             hcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccC-CCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCccccc---
Confidence            45678999999999997   5999999999999999998 89999999999977  799999999997655  5544   


Q ss_pred             hhHHHHhhhhhhccCCCCCcHHHHHHH--cCCHHHHHHHHH-CCCCCCCCCC-----CCChHHHHHHHcCChHHHHHHHh
Q psy10604        136 KKLDNQLNIHQKNIKNNGLNALHLAAK--DGHTTVVKALLK-GGCKVDASTK-----KGNTALHIAALDSLVTDIASSAI  207 (225)
Q Consensus       136 ~~~~~~~~~~~~~~d~~g~t~L~~A~~--~~~~~~~~~Ll~-~ga~~~~~d~-----~g~tpL~~A~~~~~~~~i~~~l~  207 (225)
                                     +.+.+|||.++.  .++.+++++|+. .|++++....     .|.+|++++...++. .|+++|+
T Consensus       112 ---------------~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~-eIvklLi  175 (672)
T PHA02730        112 ---------------NINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRP-EVLLWLL  175 (672)
T ss_pred             ---------------ccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCch-HHHHHHH
Confidence                           368899999888  889999999996 6789876633     799999999999995 7888888


Q ss_pred             hcCCCCc
Q psy10604        208 TDATSLP  214 (225)
Q Consensus       208 ~~~~~~~  214 (225)
                      .+|+..+
T Consensus       176 ~~g~~v~  182 (672)
T PHA02730        176 KSECYST  182 (672)
T ss_pred             HcCCccc
Confidence            8887763

>KOG0195|consensus

Probab=99.80  E-value=1.7e-19  Score=140.19  Aligned_cols=130  Identities=28%  Similarity=0.329  Sum_probs=112.6

Q ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhh
Q psy10604         64 CYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLN  143 (225)
Q Consensus        64 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~  143 (225)
                      .+..|.+||||||..|+..+++.|+..|+.+|..+ -...||||+|+..|+.++|+.|+++.++++..+.          
T Consensus        30 gddhgfsplhwaakegh~aivemll~rgarvn~tn-mgddtplhlaaahghrdivqkll~~kadvnavne----------   98 (448)
T KOG0195|consen   30 GDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTN-MGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNE----------   98 (448)
T ss_pred             ccccCcchhhhhhhcccHHHHHHHHhccccccccc-CCCCcchhhhhhcccHHHHHHHHHHhcccchhhc----------
Confidence            46778999999999999999999999999999987 6778999999999999999999999999999885          


Q ss_pred             hhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHHhhcCCCC
Q psy10604        144 IHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAITDATSL  213 (225)
Q Consensus       144 ~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~~~~~~  213 (225)
                              .|+|||||||.-|.-.+++-|+..|+.++..++.|.|||+-|.-.-. +.+..+.-+.|+..
T Consensus        99 --------hgntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldkakp~l~-~~l~e~aek~gq~~  159 (448)
T KOG0195|consen   99 --------HGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAKPMLK-NTLLEIAEKHGQSP  159 (448)
T ss_pred             --------cCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhhchHHH-HHHHHHHHHhCCCC
Confidence                    89999999999999999999999999999999999999987743211 23444444444443

>KOG0505|consensus

Probab=99.79  E-value=5.3e-19  Score=147.19  Aligned_cols=152  Identities=25%  Similarity=0.329  Sum_probs=127.0

Q ss_pred             cccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchh-----
Q psy10604         62 YDCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSK-----  136 (225)
Q Consensus        62 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~-----  136 (225)
                      ..++.+|.|+||-+|...+.++|++|++.|+++|..+ ..|+||||.|+..|+..++++|++.|+++...+..+-     
T Consensus        67 ~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d-~e~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P~dl  145 (527)
T KOG0505|consen   67 NLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQD-NEGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDL  145 (527)
T ss_pred             cccCCccchhHHHHHhcccHHHHHHHHHhcCCccccc-cccCCcchhhcccccHHHHHHHHHhhhhhhhccCCCCCcccc
Confidence            5578999999999999999999999999999999999 8999999999999999999999999998655443000     


Q ss_pred             ----------------------------h-----HHHHhhhhhhcc---CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCC
Q psy10604        137 ----------------------------K-----LDNQLNIHQKNI---KNNGLNALHLAAKDGHTTVVKALLKGGCKVD  180 (225)
Q Consensus       137 ----------------------------~-----~~~~~~~~~~~~---d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~  180 (225)
                                                  +     -.......+.+.   +..|.|+||.|+..|..+...+|+.+|.+++
T Consensus       146 ~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~  225 (527)
T KOG0505|consen  146 AEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYSVN  225 (527)
T ss_pred             ccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhccCcc
Confidence                                        0     001122233332   3459999999999999999999999999999


Q ss_pred             CCCCCCChHHHHHHHcCChHHHHHHHhhcCCCCch
Q psy10604        181 ASTKKGNTALHIAALDSLVTDIASSAITDATSLPC  215 (225)
Q Consensus       181 ~~d~~g~tpL~~A~~~~~~~~i~~~l~~~~~~~~~  215 (225)
                      .+|.+|+||||.|+..|.. .+..+|+.+++.+..
T Consensus       226 ~~D~dgWtPlHAAA~Wg~~-~~~elL~~~ga~~d~  259 (527)
T KOG0505|consen  226 IKDYDGWTPLHAAAHWGQE-DACELLVEHGADMDA  259 (527)
T ss_pred             cccccCCCcccHHHHhhhH-hHHHHHHHhhcccch
Confidence            9999999999999999995 666699888877643

>PHA02795 ankyrin-like protein; Provisional

Probab=99.79  E-value=3.3e-18  Score=143.47  Aligned_cols=138  Identities=11%  Similarity=0.007  Sum_probs=117.3

Q ss_pred             HHHHcCCHHHHHHHHHcCCCCC------CCCCCCCCCHHHHHHH--cCCHHHHHHHHHCCCCCCCCCc----------ch
Q psy10604         74 RAARAGHLDKLRELLEAGVDIN------TSNASDPNTSFLRAAR--AGHLDKLRELLEAGVDINTSNA----------TS  135 (225)
Q Consensus        74 ~A~~~g~~~~v~~Ll~~g~~~~------~~~~~~g~t~Lh~A~~--~~~~~iv~~Ll~~g~~~~~~~~----------~~  135 (225)
                      +|+..+..+++++|+++|++++      .++ ..++|+||+++.  +|+.+++++|+++|++++..+.          ..
T Consensus        83 ~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~-~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~~~~t~lh~A~~~~~  161 (437)
T PHA02795         83 LFAYITYKDIISALVSKNYMEDIFSIIIKNC-NSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKIECLNAYFRGICKKE  161 (437)
T ss_pred             HHhhcchHHHHHHHHhcccccchhhhhhhcc-ccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHcCc
Confidence            8999999999999999999988      665 679999999999  8999999999999999987654          23


Q ss_pred             hhHHHHhhhhhhccC---------CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHH
Q psy10604        136 KKLDNQLNIHQKNIK---------NNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSA  206 (225)
Q Consensus       136 ~~~~~~~~~~~~~~d---------~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l  206 (225)
                      .+...++...|...+         ..+.|++|.|...+..+++++|+++|++++.+|..|.||||+|+..|+. .++++|
T Consensus       162 ~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~-eiVelL  240 (437)
T PHA02795        162 SSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYI-DLVSWL  240 (437)
T ss_pred             HHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCH-HHHHHH
Confidence            445566666664322         2367889999999999999999999999999999999999999999996 567777


Q ss_pred             hhcCCCC
Q psy10604        207 ITDATSL  213 (225)
Q Consensus       207 ~~~~~~~  213 (225)
                      +..|+.+
T Consensus       241 L~~GAdI  247 (437)
T PHA02795        241 LENGANV  247 (437)
T ss_pred             HHCCCCC
Confidence            7777665

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.79  E-value=2.6e-18  Score=157.30  Aligned_cols=109  Identities=29%  Similarity=0.342  Sum_probs=91.3

Q ss_pred             CHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhhhhhhccCCCCCcHHHH
Q psy10604         80 HLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHL  159 (225)
Q Consensus        80 ~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~  159 (225)
                      ..++-..+.+.+...  .+ ..+.++||.|+..|+.++++.|++.|++++..+.                  .|+||||+
T Consensus       506 ~l~v~~ll~~~~~~~--~~-~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~------------------~G~TpLh~  564 (823)
T PLN03192        506 DLNVGDLLGDNGGEH--DD-PNMASNLLTVASTGNAALLEELLKAKLDPDIGDS------------------KGRTPLHI  564 (823)
T ss_pred             cccHHHHHhhccccc--CC-ccchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCC------------------CCCCHHHH
Confidence            344455555555432  22 4578999999999999999999999999999886                  99999999


Q ss_pred             HHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHHhhcC
Q psy10604        160 AAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAITDA  210 (225)
Q Consensus       160 A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~~~  210 (225)
                      |+..|+.+++++|+++|++++.+|..|+||||+|+..|+. .++++|+..+
T Consensus       565 Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~g~~-~iv~~L~~~~  614 (823)
T PLN03192        565 AASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHH-KIFRILYHFA  614 (823)
T ss_pred             HHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHhCCH-HHHHHHHhcC
Confidence            9999999999999999999999999999999999999995 5555555543

>KOG4177|consensus

Probab=99.78  E-value=1e-18  Score=158.91  Aligned_cols=132  Identities=30%  Similarity=0.389  Sum_probs=89.5

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhhh
Q psy10604         65 YSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNI  144 (225)
Q Consensus        65 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~~  144 (225)
                      ...|.||||.|++.|+.++++.+++.++..+... ..|.+++|.|...+...+++.+++.|+.++.++            
T Consensus       471 s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~-~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~------------  537 (1143)
T KOG4177|consen  471 SKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDA-KKGLTPLHLAADEDTVKVAKILLEHGANVDLRT------------  537 (1143)
T ss_pred             ccccCcchhhhhccCCchHHHHhhhcCCccCccc-hhccchhhhhhhhhhHHHHHHHhhcCCceehhc------------
Confidence            3444444444444444444444444444333333 344444444444444444444444444444444            


Q ss_pred             hhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHHhhcCCCCchH
Q psy10604        145 HQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAITDATSLPCS  216 (225)
Q Consensus       145 ~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~~~~~~~~~  216 (225)
                            ..|+||||.|+..|+.++|++|+++|++++.+++.|+||||.|+..|+ ..|+.+|++.|+..++.
T Consensus       538 ------~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~-~~i~~LLlk~GA~vna~  602 (1143)
T KOG4177|consen  538 ------GRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGH-NDIAELLLKHGASVNAA  602 (1143)
T ss_pred             ------ccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcCh-HHHHHHHHHcCCCCCcc
Confidence                  589999999999999999999999999999999999999999999998 57788888877776554

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.77  E-value=2e-18  Score=127.55  Aligned_cols=99  Identities=18%  Similarity=0.172  Sum_probs=90.6

Q ss_pred             cCCCCchHHHHHHHcCCH---HHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCCCcchhhHH
Q psy10604         64 CYSDPNTSFLRAARAGHL---DKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLE-AGVDINTSNATSKKLD  139 (225)
Q Consensus        64 ~~~~g~t~L~~A~~~g~~---~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~-~g~~~~~~~~~~~~~~  139 (225)
                      .+..|.||||+|+..|+.   +++++|++.|++++.++...|.||||+|+..++.+++++|+. .|++++.++.      
T Consensus        51 ~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~------  124 (154)
T PHA02736         51 YNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNY------  124 (154)
T ss_pred             hcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccC------
Confidence            467899999999999986   568999999999999874589999999999999999999997 4999998885      


Q ss_pred             HHhhhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCC
Q psy10604        140 NQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVD  180 (225)
Q Consensus       140 ~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~  180 (225)
                                  .|+||||+|+..++.+++++|+.+|++.+
T Consensus       125 ------------~g~tpL~~A~~~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736        125 ------------AFKTPYYVACERHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             ------------CCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence                        99999999999999999999999999875

>KOG0502|consensus

Probab=99.76  E-value=3e-18  Score=128.36  Aligned_cols=126  Identities=25%  Similarity=0.276  Sum_probs=105.7

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhhhhh
Q psy10604         67 DPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQ  146 (225)
Q Consensus        67 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~~~~  146 (225)
                      -+.+|+++++...+.+.+..+.++  -+|..| ..|.|||.||+..|+..+|++|++.|++++...+             
T Consensus       128 ~p~s~~slsVhql~L~~~~~~~~n--~VN~~D-e~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk-------------  191 (296)
T KOG0502|consen  128 MPWSPLSLSVHQLHLDVVDLLVNN--KVNACD-EFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGK-------------  191 (296)
T ss_pred             ccCChhhHHHHHHHHHHHHHHhhc--cccCcc-ccCchHhHHHHhcCchHHHHHHHHcCCChhhhhh-------------
Confidence            345666666666655555544443  355666 7899999999999999999999999999998876             


Q ss_pred             hccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHHhhcCCCC
Q psy10604        147 KNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAITDATSL  213 (225)
Q Consensus       147 ~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~~~~~~  213 (225)
                           ...++|.+|+..|..+++++|+..+.|+|..|-+|.|||-||++-|+..++..+|-+++..-
T Consensus       192 -----~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t  253 (296)
T KOG0502|consen  192 -----YRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVT  253 (296)
T ss_pred             -----hhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCChHHHHHHHHhcCCCcc
Confidence                 77899999999999999999999999999999999999999999999887777777766544

>PHA02792 ankyrin-like protein; Provisional

Probab=99.76  E-value=1.8e-17  Score=144.00  Aligned_cols=153  Identities=16%  Similarity=0.109  Sum_probs=120.5

Q ss_pred             ccCcccCCCCchHHHH-HHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHH-cCCHHHHHHHHHCCCCCCCCCcchh
Q psy10604         59 EPCYDCYSDPNTSFLR-AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAAR-AGHLDKLRELLEAGVDINTSNATSK  136 (225)
Q Consensus        59 ~~~~~~~~~g~t~L~~-A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~-~~~~~iv~~Ll~~g~~~~~~~~~~~  136 (225)
                      ......+-+|.+++|+ |...|++|+|++|+++|++++.++ ..|.||+|+|+. .++.+++++|++.|+++...+..+.
T Consensus        62 ~~~~~~n~~~~~~~~~~~s~n~~lElvk~LI~~GAdvN~~~-n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~  140 (631)
T PHA02792         62 SSVDYKNINDFDIFEYLCSDNIDIELLKLLISKGLEINSIK-NGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGY  140 (631)
T ss_pred             hCCCcCccCCccHHHHHHHhcccHHHHHHHHHcCCCccccc-CCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCc
Confidence            3334456777889986 556789999999999999999998 568999999966 6999999999999998654433222


Q ss_pred             h-------------HHHHhh-----hhhhccCCCCCcHHHHHHHcC-------CHHHHHHHHHCCCCCCCCCCCCChHHH
Q psy10604        137 K-------------LDNQLN-----IHQKNIKNNGLNALHLAAKDG-------HTTVVKALLKGGCKVDASTKKGNTALH  191 (225)
Q Consensus       137 ~-------------~~~~~~-----~~~~~~d~~g~t~L~~A~~~~-------~~~~~~~Ll~~ga~~~~~d~~g~tpL~  191 (225)
                      .             ..+...     ...+..|..|+||||+|+..+       +.+++++|+++|++++..|..|.||||
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~  220 (631)
T PHA02792        141 KIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLY  220 (631)
T ss_pred             chhhhhcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHH
Confidence            2             111111     122345678999999999999       899999999999999999999999999


Q ss_pred             HHHHcC--ChHHHHHHHhhcCCCC
Q psy10604        192 IAALDS--LVTDIASSAITDATSL  213 (225)
Q Consensus       192 ~A~~~~--~~~~i~~~l~~~~~~~  213 (225)
                      +|+...  . ..++++|+.+....
T Consensus       221 ~~~~~~~i~-~ei~~~L~~~~~~~  243 (631)
T PHA02792        221 YYVDKCDIK-REIFDALFDSNYSG  243 (631)
T ss_pred             HHHHcccch-HHHHHHHHhccccc
Confidence            999988  4 35888888865433

>KOG0195|consensus

Probab=99.75  E-value=4e-18  Score=132.56  Aligned_cols=121  Identities=30%  Similarity=0.428  Sum_probs=104.7

Q ss_pred             HHHcCCHHHHHHHHHc-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhhhhhhccCCCC
Q psy10604         75 AARAGHLDKLRELLEA-GVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNG  153 (225)
Q Consensus        75 A~~~g~~~~v~~Ll~~-g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~g  153 (225)
                      =|+.|+.--|+..|+. --|.|..+ ..|.+|||||++.|+..+++.|+.+|+.++..+.                  ..
T Consensus         7 wcregna~qvrlwld~tehdln~gd-dhgfsplhwaakegh~aivemll~rgarvn~tnm------------------gd   67 (448)
T KOG0195|consen    7 WCREGNAFQVRLWLDDTEHDLNVGD-DHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNM------------------GD   67 (448)
T ss_pred             hhhcCCeEEEEEEecCccccccccc-ccCcchhhhhhhcccHHHHHHHHhcccccccccC------------------CC
Confidence            3556665555555553 45667777 7899999999999999999999999999998875                  66


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHHhhcCCCCch
Q psy10604        154 LNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAITDATSLPC  215 (225)
Q Consensus       154 ~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~~~~~~~~  215 (225)
                      .||||+|+..|+.+++..|++..+|+|..+.+|.|||||||..|+ +.|++-|+..|+.++.
T Consensus        68 dtplhlaaahghrdivqkll~~kadvnavnehgntplhyacfwgy-dqiaedli~~ga~v~i  128 (448)
T KOG0195|consen   68 DTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHGNTPLHYACFWGY-DQIAEDLISCGAAVNI  128 (448)
T ss_pred             CcchhhhhhcccHHHHHHHHHHhcccchhhccCCCchhhhhhhcH-HHHHHHHHhccceeee
Confidence            799999999999999999999999999999999999999999999 7899999988877653

>PHA02792 ankyrin-like protein; Provisional

Probab=99.74  E-value=2.6e-17  Score=142.99  Aligned_cols=129  Identities=13%  Similarity=0.187  Sum_probs=109.5

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC--CCCHHHHHHHcCCH---HHHHHHHHCCCCCCCCCcchhhHHHH
Q psy10604         67 DPNTSFLRAARAGHLDKLRELLEAGVDINTSNASD--PNTSFLRAARAGHL---DKLRELLEAGVDINTSNATSKKLDNQ  141 (225)
Q Consensus        67 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~--g~t~Lh~A~~~~~~---~iv~~Ll~~g~~~~~~~~~~~~~~~~  141 (225)
                      .+..+++.|+..|+.++|++|+++|++++..+ ..  |.||||+|+.....   +++++|++.|++++.++.        
T Consensus       338 ~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD-~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~--------  408 (631)
T PHA02792        338 KHINKYFQKFDNRDPKVVEYILKNGNVVVEDD-DNIINIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDK--------  408 (631)
T ss_pred             CcchHHHHHHHcCCHHHHHHHHHcCCchhhhc-CCCCChhHHHHHHHhccHhHHHHHHHHHhcCCccccccc--------
Confidence            45677899999999999999999999999887 44  46999998877654   468899999999999886        


Q ss_pred             hhhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHH--cCC-------hHHHHHHHhhcCCC
Q psy10604        142 LNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAAL--DSL-------VTDIASSAITDATS  212 (225)
Q Consensus       142 ~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~--~~~-------~~~i~~~l~~~~~~  212 (225)
                                .|+||||+|+..++.+++++|+++|++++.+|..|.|||++|+.  .+.       ...+.++++..+..
T Consensus       409 ----------~G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~p~  478 (631)
T PHA02792        409 ----------HGRSILYYCIESHSVSLVEWLIDNGADINITTKYGSTCIGICVILAHACIPEIAELYIKILEIILSKLPT  478 (631)
T ss_pred             ----------cCcchHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCCC
Confidence                      99999999999999999999999999999999999999999975  222       12356777777666


Q ss_pred             Cc
Q psy10604        213 LP  214 (225)
Q Consensus       213 ~~  214 (225)
                      +.
T Consensus       479 i~  480 (631)
T PHA02792        479 IE  480 (631)
T ss_pred             hh
Confidence            54

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.74  E-value=3.1e-17  Score=132.40  Aligned_cols=120  Identities=18%  Similarity=0.156  Sum_probs=100.0

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhhh
Q psy10604         65 YSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNI  144 (225)
Q Consensus        65 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~~  144 (225)
                      +..|.||||+|+..|+.+++++|+++|++++..++..|.||||+|+..++.+++++|+..|++++.++.           
T Consensus        67 d~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~Aa~~~~~eivklLL~~GAdin~kd~-----------  135 (300)
T PHA02884         67 ENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVLHGCLKCLEILLSYGADINIQTN-----------  135 (300)
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCC-----------
Confidence            357999999999999999999999999999987546799999999999999999999999999999886           


Q ss_pred             hhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHHhhcCC
Q psy10604        145 HQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAITDAT  211 (225)
Q Consensus       145 ~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~~~~  211 (225)
                             .|+||||+|+..++..++.++.  |..   .+..+.+|++++.   +. .+.++|+.++.
T Consensus       136 -------~G~TpL~~A~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~---n~-ei~~~Lish~v  186 (300)
T PHA02884        136 -------DMVTPIELALMICNNFLAFMIC--DNE---ISNFYKHPKKILI---NF-DILKILVSHFI  186 (300)
T ss_pred             -------CCCCHHHHHHHhCChhHHHHhc--CCc---ccccccChhhhhc---cH-HHHHHHHHHHH
Confidence                   8999999999999888876654  332   4566678888653   33 45566666544

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.73  E-value=4.8e-17  Score=108.97  Aligned_cols=87  Identities=39%  Similarity=0.581  Sum_probs=77.3

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhhhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC
Q psy10604        106 FLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKK  185 (225)
Q Consensus       106 Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~  185 (225)
                      ||+|+..|+.+++++|++.+.+++.                      |+||||+|+..|+.+++++|+++|++++.+|..
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----------------------~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~   58 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----------------------GNTALHYAAENGNLEIVKLLLENGADINSQDKN   58 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----------------------SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTT
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----------------------CCCHHHHHHHcCCHHHHHHHHHhcccccccCCC
Confidence            7999999999999999999877763                      568999999999999999999999999999999


Q ss_pred             CChHHHHHHHcCChHHHHHHHhhcCCCCch
Q psy10604        186 GNTALHIAALDSLVTDIASSAITDATSLPC  215 (225)
Q Consensus       186 g~tpL~~A~~~~~~~~i~~~l~~~~~~~~~  215 (225)
                      |+||||+|+..|+. .++++|+..|..++.
T Consensus        59 g~t~L~~A~~~~~~-~~~~~Ll~~g~~~~~   87 (89)
T PF12796_consen   59 GNTALHYAAENGNL-EIVKLLLEHGADVNI   87 (89)
T ss_dssp             SSBHHHHHHHTTHH-HHHHHHHHTTT-TTS
T ss_pred             CCCHHHHHHHcCCH-HHHHHHHHcCCCCCC
Confidence            99999999999996 577888888877654

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PHA02741 hypothetical protein; Provisional

Probab=99.72  E-value=6.6e-17  Score=121.25  Aligned_cols=99  Identities=20%  Similarity=0.216  Sum_probs=89.4

Q ss_pred             ccCCCCchHHHHHHHcCC----HHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCCCcchhh
Q psy10604         63 DCYSDPNTSFLRAARAGH----LDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLE-AGVDINTSNATSKK  137 (225)
Q Consensus        63 ~~~~~g~t~L~~A~~~g~----~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~-~g~~~~~~~~~~~~  137 (225)
                      ..+..|.||||+|+..|+    .+++++|++.|++++.++...|.||||+|+..++.+++++|+. .|++++..+.    
T Consensus        55 ~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~----  130 (169)
T PHA02741         55 ATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNA----  130 (169)
T ss_pred             ccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCC----
Confidence            356789999999999998    5899999999999999873389999999999999999999997 5999998875    


Q ss_pred             HHHHhhhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCC
Q psy10604        138 LDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKV  179 (225)
Q Consensus       138 ~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~  179 (225)
                                    .|+||||+|+..++.+++++|++.++..
T Consensus       131 --------------~g~tpL~~A~~~~~~~iv~~L~~~~~~~  158 (169)
T PHA02741        131 --------------DNKSPFELAIDNEDVAMMQILREIVATS  158 (169)
T ss_pred             --------------CCCCHHHHHHHCCCHHHHHHHHHHHHHh
Confidence                          9999999999999999999999887654

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.72  E-value=2.6e-17  Score=149.64  Aligned_cols=125  Identities=21%  Similarity=0.202  Sum_probs=106.2

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCC-------------CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC
Q psy10604         65 YSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNA-------------SDPNTSFLRAARAGHLDKLRELLEAGVDINTS  131 (225)
Q Consensus        65 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~-------------~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~  131 (225)
                      ...|.||||+|+..|+.++|++|+++|++++.+..             ..|.||||+|+..|+.+++++|++.|++++.+
T Consensus       125 ~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~  204 (743)
T TIGR00870       125 FTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTA  204 (743)
T ss_pred             cCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhH
Confidence            35699999999999999999999999999986531             35899999999999999999999999999988


Q ss_pred             CcchhhHHHHhhhhhhccCCCCCcHHHHHHHcC---------CHHHHHHHHHCCCCC-------CCCCCCCChHHHHHHH
Q psy10604        132 NATSKKLDNQLNIHQKNIKNNGLNALHLAAKDG---------HTTVVKALLKGGCKV-------DASTKKGNTALHIAAL  195 (225)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~~---------~~~~~~~Ll~~ga~~-------~~~d~~g~tpL~~A~~  195 (225)
                      +.                  .|+||||+|+..+         ...+.++++..++..       +..|..|.||||+|+.
T Consensus       205 d~------------------~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~  266 (743)
T TIGR00870       205 DS------------------LGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAK  266 (743)
T ss_pred             hh------------------hhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhh
Confidence            86                  8999999999986         334667777766654       6679999999999999


Q ss_pred             cCChHHHHHHHhh
Q psy10604        196 DSLVTDIASSAIT  208 (225)
Q Consensus       196 ~~~~~~i~~~l~~  208 (225)
                      .|+.+ +.++++.
T Consensus       267 ~g~~~-l~~lLL~  278 (743)
T TIGR00870       267 EGRIV-LFRLKLA  278 (743)
T ss_pred             cCCcc-HHHHHHH
Confidence            99965 4445444

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG4214|consensus

Probab=99.71  E-value=9.6e-17  Score=104.30  Aligned_cols=112  Identities=24%  Similarity=0.381  Sum_probs=99.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhhhhhhccC
Q psy10604         71 SFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIK  150 (225)
Q Consensus        71 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~d  150 (225)
                      -+.|++.+|.++-|+.....|.+++..  ..|++|||+|+-+|+.+++++|+..|++++.+|+                 
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~nVn~~--~ggR~plhyAAD~GQl~ilefli~iGA~i~~kDK-----------------   65 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGLNVNEI--YGGRTPLHYAADYGQLSILEFLISIGANIQDKDK-----------------   65 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHccccHHHH--hCCcccchHhhhcchHHHHHHHHHhccccCCccc-----------------
Confidence            478999999999999999999777765  4799999999999999999999999999999987                 


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHH
Q psy10604        151 NNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSA  206 (225)
Q Consensus       151 ~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l  206 (225)
                       .|.|||..|+-.|+.+||++|++.|++......+|.+.+..+-.    +.|..+|
T Consensus        66 -ygITPLLsAvwEGH~~cVklLL~~GAdrt~~~PdG~~~~eate~----edIr~LL  116 (117)
T KOG4214|consen   66 -YGITPLLSAVWEGHRDCVKLLLQNGADRTIHAPDGTALIEATEE----EDIRELL  116 (117)
T ss_pred             -cCCcHHHHHHHHhhHHHHHHHHHcCcccceeCCCchhHHhhccH----HHHHHHh
Confidence             99999999999999999999999999999999999888765432    4555544

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.70  E-value=3.9e-16  Score=121.13  Aligned_cols=125  Identities=29%  Similarity=0.385  Sum_probs=112.6

Q ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCC-----HHHHHHHHHCCC---CCCCCCcch
Q psy10604         64 CYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGH-----LDKLRELLEAGV---DINTSNATS  135 (225)
Q Consensus        64 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~-----~~iv~~Ll~~g~---~~~~~~~~~  135 (225)
                      .+..+.++++.++..+...++++++..|++++..+ ..|.||||+|+..++     .+++++|++.|+   ..+.++.  
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~--  145 (235)
T COG0666          69 RDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKD-ADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDE--  145 (235)
T ss_pred             CCccccCHHHHHHHcCcHHHHHHHHHcCCCccccc-CCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCC--
Confidence            45558899999999999999999999999998888 999999999999999     999999999999   4444464  


Q ss_pred             hhHHHHhhhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHHhh
Q psy10604        136 KKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAIT  208 (225)
Q Consensus       136 ~~~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~  208 (225)
                                      .|+||||+|+..|+.+++.+|+..|++++..+..|.||+++|+..++.+ +...++.
T Consensus       146 ----------------~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~-~~~~l~~  201 (235)
T COG0666         146 ----------------DGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIE-LVKLLLD  201 (235)
T ss_pred             ----------------CCCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHH-HHHHHHh
Confidence                            9999999999999999999999999999999999999999999999964 4444444

>PHA02917 ankyrin-like protein; Provisional

Probab=99.70  E-value=5.9e-16  Score=137.91  Aligned_cols=127  Identities=19%  Similarity=0.178  Sum_probs=105.0

Q ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCCCHHHHHHHcC-----------------------CHHHHH
Q psy10604         64 CYSDPNTSFLRAARAGHLDKLRELLE-AGVDINTSNASDPNTSFLRAARAG-----------------------HLDKLR  119 (225)
Q Consensus        64 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~~g~t~Lh~A~~~~-----------------------~~~iv~  119 (225)
                      .+..|.++    ....+.+++++||. .|++++..+ ..|.||||.|++.+                       ..++++
T Consensus       362 ~~~~g~~~----~~~~~~~~i~~LL~~~ga~~~~~~-~~G~TpL~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  436 (661)
T PHA02917        362 EAIHGYFR----NINIDSYTMKYLLKKEGGDAVNHL-DDGEIPIGHLCKSNYGCYNFYTYTYKKGLCDMSYACPILSTIN  436 (661)
T ss_pred             CCccccch----hhcCCHHHHHHHHHhcCCCccccC-CCCCChhHHHHHhcccchhhhhhhhhhccchhhhhhhhHHHHH
Confidence            34455543    34667788888887 688877777 57999999987543                       256789


Q ss_pred             HHHHCCCCCCCCCcchhhHHHHhhhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHH-cCC
Q psy10604        120 ELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAAL-DSL  198 (225)
Q Consensus       120 ~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~-~~~  198 (225)
                      +|+++|++++.++.                  .|+||||+|+..++.+++++|+++|++++.+|..|.||||+|+. .++
T Consensus       437 ~Ll~~GAdIN~kd~------------------~G~TpLh~Aa~~~~~~~v~~Ll~~GAdin~~d~~G~T~L~~A~~~~~~  498 (661)
T PHA02917        437 ICLPYLKDINMIDK------------------RGETLLHKAVRYNKQSLVSLLLESGSDVNIRSNNGYTCIAIAINESRN  498 (661)
T ss_pred             HHHHCCCCCCCCCC------------------CCcCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHhCCC
Confidence            99999999999886                  99999999999999999999999999999999999999999996 556


Q ss_pred             hHHHHHHHhhcCCCCc
Q psy10604        199 VTDIASSAITDATSLP  214 (225)
Q Consensus       199 ~~~i~~~l~~~~~~~~  214 (225)
                       ..++.+++..+..+.
T Consensus       499 -~~iv~~LL~~ga~i~  513 (661)
T PHA02917        499 -IELLKMLLCHKPTLD  513 (661)
T ss_pred             -HHHHHHHHHcCCChh
Confidence             577888888777664

>KOG3676|consensus

Probab=99.69  E-value=3.8e-16  Score=135.96  Aligned_cols=130  Identities=21%  Similarity=0.138  Sum_probs=116.6

Q ss_pred             CcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCC----------------------CCCCCCHHHHHHHcCCHHHH
Q psy10604         61 CYDCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSN----------------------ASDPNTSFLRAARAGHLDKL  118 (225)
Q Consensus        61 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~----------------------~~~g~t~Lh~A~~~~~~~iv  118 (225)
                      +......|.||||.|..+.+.++|++|++.|+|++.+-                      .+.|..||-.|+--++.+|+
T Consensus       177 ~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eiv  256 (782)
T KOG3676|consen  177 YTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIV  256 (782)
T ss_pred             hhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHH
Confidence            33456779999999999999999999999999987752                      14678999999999999999


Q ss_pred             HHHHHCCCCCCCCCcchhhHHHHhhhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCC--CCCCCCCCChHHHHHHHc
Q psy10604        119 RELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCK--VDASTKKGNTALHIAALD  196 (225)
Q Consensus       119 ~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~--~~~~d~~g~tpL~~A~~~  196 (225)
                      ++|+++|++++.+|.                  +|+|.||..+..-..++.++++++|++  ...+|..|.|||.+|+..
T Consensus       257 rlLl~~gAd~~aqDS------------------~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAakl  318 (782)
T KOG3676|consen  257 RLLLAHGADPNAQDS------------------NGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKL  318 (782)
T ss_pred             HHHHhcCCCCCcccc------------------CCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHh
Confidence            999999999999997                  999999999999999999999999999  899999999999999999


Q ss_pred             CChHHHHHHHhh
Q psy10604        197 SLVTDIASSAIT  208 (225)
Q Consensus       197 ~~~~~i~~~l~~  208 (225)
                      |..+....++-+
T Consensus       319 Gk~emf~~ile~  330 (782)
T KOG3676|consen  319 GKKEMFQHILER  330 (782)
T ss_pred             hhHHHHHHHHHh
Confidence            997655555544

>KOG0514|consensus

Probab=99.68  E-value=7.4e-17  Score=128.91  Aligned_cols=118  Identities=26%  Similarity=0.322  Sum_probs=94.4

Q ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCCCcchhh-----------------HHHHhhhhhhc---cCCC
Q psy10604         94 INTSNASDPNTSFLRAARAGHLDKLRELLEAG-VDINTSNATSKK-----------------LDNQLNIHQKN---IKNN  152 (225)
Q Consensus        94 ~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g-~~~~~~~~~~~~-----------------~~~~~~~~~~~---~d~~  152 (225)
                      +|..| ..|.|+||||+.+++.++|+.|++.| ++++.++..+..                 ....+..+++.   ..+.
T Consensus       261 VNlaD-sNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnVNaKAsQ~  339 (452)
T KOG0514|consen  261 VNLAD-SNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDVNAKASQH  339 (452)
T ss_pred             hhhhc-CCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCcchhhhhh
Confidence            56677 88999999999999999999999986 688888764432                 22223333322   1367


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHHhhcCCC
Q psy10604        153 GLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAITDATS  212 (225)
Q Consensus       153 g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~~~~~  212 (225)
                      |.|+|++|+.+|+.++++.|+..|+|+|.+|.+|.|+|++|+.+||.+.+..+|....++
T Consensus       340 gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd  399 (452)
T KOG0514|consen  340 GQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCD  399 (452)
T ss_pred             cchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCccc
Confidence            999999999999999999999999999999999999999999999976555555444433

>KOG0507|consensus

Probab=99.68  E-value=9.3e-17  Score=138.57  Aligned_cols=126  Identities=22%  Similarity=0.150  Sum_probs=116.6

Q ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhh
Q psy10604         64 CYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLN  143 (225)
Q Consensus        64 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~  143 (225)
                      ++.+|.|+||.|+.+|+.++++.|++.-+-++..+ ..|.+|||+|++.|+.+++++++..+..++....          
T Consensus        45 qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d-~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~----------  113 (854)
T KOG0507|consen   45 QDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCD-TKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNI----------  113 (854)
T ss_pred             cCccchhHHHHHHhcCchHHHHHHhcchhhhhhhh-ccCcceEEehhhcCcchHHHHHHhcccCCCcccc----------
Confidence            56689999999999999999999999999889998 8999999999999999999999999988888775          


Q ss_pred             hhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHHhh
Q psy10604        144 IHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAIT  208 (225)
Q Consensus       144 ~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~  208 (225)
                              .|.||||.|+++|+.+.+.+|+.+|++.-.+|..+.|+|+.|++.|..+.|..++-.
T Consensus       114 --------e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~  170 (854)
T KOG0507|consen  114 --------ENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQK  170 (854)
T ss_pred             --------cCcCccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhh
Confidence                    899999999999999999999999999999999999999999999998666555443

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.67  E-value=1.2e-15  Score=138.73  Aligned_cols=63  Identities=32%  Similarity=0.391  Sum_probs=54.0

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC--------------CCCChHHHHHHHcCChHHHHHHHhhcCCCCc
Q psy10604        151 NNGLNALHLAAKDGHTTVVKALLKGGCKVDAST--------------KKGNTALHIAALDSLVTDIASSAITDATSLP  214 (225)
Q Consensus       151 ~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d--------------~~g~tpL~~A~~~~~~~~i~~~l~~~~~~~~  214 (225)
                      ..|.||||+|+.+|+.+++++|+++|++++.++              ..|.||||+|+..|+. .++++|+.++++++
T Consensus       126 ~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~-~iv~lLl~~gadin  202 (743)
T TIGR00870       126 TPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSP-SIVALLSEDPADIL  202 (743)
T ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCH-HHHHHHhcCCcchh
Confidence            469999999999999999999999999998653              3589999999999995 67777777776553

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.64  E-value=2e-15  Score=135.09  Aligned_cols=106  Identities=27%  Similarity=0.366  Sum_probs=98.8

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhhhhhhcc
Q psy10604         70 TSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNI  149 (225)
Q Consensus        70 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~  149 (225)
                      ..|+.|+..|+.+.++.|++.|++++..+ ..|.||||+|+..|+.+++++|++.|++++.++.                
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadin~~d-~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~----------------  146 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADPNCRD-YDGRTPLHIACANGHVQVVRVLLEFGADPTLLDK----------------  146 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcC-CCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCC----------------
Confidence            35889999999999999999999999998 8999999999999999999999999999999886                


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHC-------CCCCCCCCCCCChHHHHHH
Q psy10604        150 KNNGLNALHLAAKDGHTTVVKALLKG-------GCKVDASTKKGNTALHIAA  194 (225)
Q Consensus       150 d~~g~t~L~~A~~~~~~~~~~~Ll~~-------ga~~~~~d~~g~tpL~~A~  194 (225)
                        .|+||||+|+..++.+++++|+.+       |++.+..+..|.+|+..+.
T Consensus       147 --~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        147 --DGKTPLELAEENGFREVVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             --CCCCHHHHHHHCCcHHHHHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence              999999999999999999999998       9999988888888876544

>KOG0507|consensus

Probab=99.63  E-value=1.1e-15  Score=132.01  Aligned_cols=176  Identities=25%  Similarity=0.269  Sum_probs=133.8

Q ss_pred             HHHHHHhhhhhccccCcc-cCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC
Q psy10604         46 RQEAKIHNAVISLEPCYD-CYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEA  124 (225)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~  124 (225)
                      .....+..++++-+.-.+ ++..|.+|||+|++.|+.++++.++..+..+|..+ ..|.||||.|+..|+.+++.+|+++
T Consensus        59 ng~~~is~llle~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~-~e~~tplhlaaqhgh~dvv~~Ll~~  137 (854)
T KOG0507|consen   59 NGQNQISKLLLDYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVN-IENETPLHLAAQHGHLEVVFYLLKK  137 (854)
T ss_pred             cCchHHHHHHhcchhhhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCccc-ccCcCccchhhhhcchHHHHHHHhc
Confidence            334444455555444333 45778999999999999999999999998888888 8999999999999999999999999


Q ss_pred             CCCCCCCCcchhhHHHH----------------------hhhhh-hccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCC
Q psy10604        125 GVDINTSNATSKKLDNQ----------------------LNIHQ-KNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDA  181 (225)
Q Consensus       125 g~~~~~~~~~~~~~~~~----------------------~~~~~-~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~  181 (225)
                      |+++-.++.+....+..                      +...+ ...+..+-+|+|+|+.+|+.++++.|+.+|.++|.
T Consensus       138 ~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~din~  217 (854)
T KOG0507|consen  138 NADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDINY  217 (854)
T ss_pred             CCCccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCccc
Confidence            99987776533321111                      11111 12246788999999999999999999999999999


Q ss_pred             CCCCCChHHHHHHHcCChHHHHHHHhh----cCCCCchHHHHhhhh
Q psy10604        182 STKKGNTALHIAALDSLVTDIASSAIT----DATSLPCSVILRTLR  223 (225)
Q Consensus       182 ~d~~g~tpL~~A~~~~~~~~i~~~l~~----~~~~~~~~~~~~~~~  223 (225)
                      ....| |+||-|+..|..++|..+|..    +...-+|.+.++.|.
T Consensus       218 ~t~~g-talheaalcgk~evvr~ll~~gin~h~~n~~~qtaldil~  262 (854)
T KOG0507|consen  218 TTEDG-TALHEAALCGKAEVVRFLLEIGINTHIKNQHGQTALDIII  262 (854)
T ss_pred             ccccc-hhhhhHhhcCcchhhhHHHhhccccccccccchHHHHHHH
Confidence            98887 999999999997666655543    234446666666654

>KOG3676|consensus

Probab=99.63  E-value=2.2e-15  Score=131.28  Aligned_cols=158  Identities=23%  Similarity=0.235  Sum_probs=114.9

Q ss_pred             CCCCchHHHHHHHc---CCHHHHHHHHHcCC----CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhh
Q psy10604         65 YSDPNTSFLRAARA---GHLDKLRELLEAGV----DINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKK  137 (225)
Q Consensus        65 ~~~g~t~L~~A~~~---g~~~~v~~Ll~~g~----~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~  137 (225)
                      ...|.|+||.|..+   ++.++++.|++--.    |+-..+.+.|+||||+|+.+.+.++|.+|++.||||+.+....-=
T Consensus       140 Ga~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF  219 (782)
T KOG3676|consen  140 GATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFF  219 (782)
T ss_pred             cchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhcccc
Confidence            57799999999974   34588999988432    333334479999999999999999999999999999976531000


Q ss_pred             HHHHhhhhhhccC-----CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHH--------
Q psy10604        138 LDNQLNIHQKNIK-----NNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIAS--------  204 (225)
Q Consensus       138 ~~~~~~~~~~~~d-----~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~--------  204 (225)
                      ....-......+|     ..|..||.+|++.++.+++++|+.+|||++.+|..|+|.||..+.+-..+..-.        
T Consensus       220 ~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~  299 (782)
T KOG3676|consen  220 CPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANA  299 (782)
T ss_pred             CcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            0000000001111     478899999999999999999999999999999999999998887743322222        


Q ss_pred             -HHhhcCCCCchHHHHhhh
Q psy10604        205 -SAITDATSLPCSVILRTL  222 (225)
Q Consensus       205 -~l~~~~~~~~~~~~~~~~  222 (225)
                       ..+.|.+++++.+|..++
T Consensus       300 l~~v~N~qgLTPLtLAakl  318 (782)
T KOG3676|consen  300 LEHVRNNQGLTPLTLAAKL  318 (782)
T ss_pred             cccccccCCCChHHHHHHh
Confidence             234455678888887665

>KOG0505|consensus

Probab=99.58  E-value=2.6e-15  Score=125.36  Aligned_cols=118  Identities=28%  Similarity=0.353  Sum_probs=107.2

Q ss_pred             cCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCC----------------------------------------
Q psy10604         60 PCYDCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNA----------------------------------------   99 (225)
Q Consensus        60 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~----------------------------------------   99 (225)
                      +...++.+|+||||.|+..|++.++++|+..|+++...+.                                        
T Consensus        98 ~Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~m  177 (527)
T KOG0505|consen   98 NVNAQDNEGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTM  177 (527)
T ss_pred             CccccccccCCcchhhcccccHHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHH
Confidence            3444688899999999999999999999999877655442                                        


Q ss_pred             ------------------CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhhhhhhccCCCCCcHHHHHH
Q psy10604        100 ------------------SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAA  161 (225)
Q Consensus       100 ------------------~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~  161 (225)
                                        ..|.|.||.|+..|..++.++|++.|.+++.+|.                  +||||||.|+
T Consensus       178 l~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~------------------dgWtPlHAAA  239 (527)
T KOG0505|consen  178 LDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYSVNIKDY------------------DGWTPLHAAA  239 (527)
T ss_pred             HHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhccCcccccc------------------cCCCcccHHH
Confidence                              3589999999999999999999999999999997                  9999999999


Q ss_pred             HcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHH
Q psy10604        162 KDGHTTVVKALLKGGCKVDASTKKGNTALHIAAL  195 (225)
Q Consensus       162 ~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~  195 (225)
                      .=|..+++++|+.+|++.+.....|.||+..|..
T Consensus       240 ~Wg~~~~~elL~~~ga~~d~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  240 HWGQEDACELLVEHGADMDAKTKMGETPLDVADE  273 (527)
T ss_pred             HhhhHhHHHHHHHhhcccchhhhcCCCCccchhh
Confidence            9999999999999999999999999999998864

>KOG1710|consensus

Probab=99.58  E-value=2.7e-14  Score=111.20  Aligned_cols=121  Identities=25%  Similarity=0.322  Sum_probs=110.9

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhhhh
Q psy10604         66 SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIH  145 (225)
Q Consensus        66 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~~~  145 (225)
                      .....+|.-+.-.|..+-...||+.-.++|.+| ..|.++|..|+..|+.+++++|++.|+++|....            
T Consensus        10 d~~~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D-~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qh------------   76 (396)
T KOG1710|consen   10 DAPKSPLLEAIDKNDTEAALALLSTVRQVNQRD-PSGMSVLAHAAYKGNLTLVELLLELGADVNDKQH------------   76 (396)
T ss_pred             cchhhHHHHHHccCcHHHHHHHHHHhhhhhccC-CCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccc------------
Confidence            345688999999999999999999877799999 8999999999999999999999999999987543            


Q ss_pred             hhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHH
Q psy10604        146 QKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIAS  204 (225)
Q Consensus       146 ~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~  204 (225)
                           ..+.||||+|+-.|+.++.++|++.|+.....|.-|+|+-..|+..|+.++|.-
T Consensus        77 -----g~~YTpLmFAALSGn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~i  130 (396)
T KOG1710|consen   77 -----GTLYTPLMFAALSGNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAI  130 (396)
T ss_pred             -----cccccHHHHHHHcCCchHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHH
Confidence                 378999999999999999999999999999999999999999999999887663

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.56  E-value=1.1e-14  Score=88.12  Aligned_cols=54  Identities=39%  Similarity=0.566  Sum_probs=46.4

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Q psy10604         68 PNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELL  122 (225)
Q Consensus        68 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll  122 (225)
                      |.||||+|+..|+.+++++|++.|.+++..+ ..|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d-~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQD-EDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B--TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCC-CCCCCHHHHHHHccCHHHHHHHC
Confidence            6899999999999999999999999999998 89999999999999999999986

...

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.55  E-value=6e-15  Score=89.84  Aligned_cols=55  Identities=45%  Similarity=0.709  Sum_probs=32.5

Q ss_pred             HHHCC-CCCCCCCcchhhHHHHhhhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHH
Q psy10604        121 LLEAG-VDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIA  193 (225)
Q Consensus       121 Ll~~g-~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A  193 (225)
                      |++.| .+++.++.                  .|.||||+|+..|+.+++++|+..|++++.+|..|+||||+|
T Consensus         1 LL~~~~~~~n~~d~------------------~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDK------------------YGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---T------------------TS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCC------------------CCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            45666 66777665                  999999999999999999999999999999999999999987

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.53  E-value=1.1e-14  Score=88.64  Aligned_cols=55  Identities=42%  Similarity=0.609  Sum_probs=31.4

Q ss_pred             HHHcC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhhhhhhccCCCCCcHHHHH
Q psy10604         87 LLEAG-VDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLA  160 (225)
Q Consensus        87 Ll~~g-~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A  160 (225)
                      ||++| .+++..+ ..|.||||+|+.+|+.+++++|++.|++++.++.                  .|+||||+|
T Consensus         1 LL~~~~~~~n~~d-~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~------------------~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQD-KYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDK------------------DGQTPLHYA   56 (56)
T ss_dssp             -----T--TT----TTS--HHHHHHHHT-HHHHHHHHHCT--TT---T------------------TS--HHHH-
T ss_pred             CCccCcCCCcCcC-CCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcC------------------CCCCHHHhC
Confidence            56777 8888888 8899999999999999999999999999999886                  899999987

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.53  E-value=3.5e-14  Score=85.86  Aligned_cols=54  Identities=44%  Similarity=0.667  Sum_probs=46.0

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhhhhhhccCCCCCcHHHHHHHcCCHHHHHHHH
Q psy10604        102 PNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALL  173 (225)
Q Consensus       102 g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll  173 (225)
                      |.||||+|++.|+.+++++|++.|.+++.++.                  .|+||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~------------------~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDE------------------DGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-T------------------TS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCC------------------CCCCHHHHHHHccCHHHHHHHC
Confidence            78999999999999999999999999999885                  9999999999999999999986

...

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.52  E-value=3.5e-13  Score=94.81  Aligned_cols=92  Identities=41%  Similarity=0.642  Sum_probs=83.5

Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhhhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCC
Q psy10604        100 SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKV  179 (225)
Q Consensus       100 ~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~  179 (225)
                      ..|.||||+|+..++.+++++|++.+...+..+.                  .|.||+|+|+..+..+++++|+..|+++
T Consensus         5 ~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~------------------~g~~~l~~a~~~~~~~~~~~ll~~~~~~   66 (126)
T cd00204           5 EDGRTPLHLAASNGHLEVVKLLLENGADVNAKDN------------------DGRTPLHLAAKNGHLEIVKLLLEKGADV   66 (126)
T ss_pred             cCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCC------------------CCCcHHHHHHHcCCHHHHHHHHHcCCCc
Confidence            6799999999999999999999999998876665                  8999999999999999999999999999


Q ss_pred             CCCCCCCChHHHHHHHcCChHHHHHHHhhcC
Q psy10604        180 DASTKKGNTALHIAALDSLVTDIASSAITDA  210 (225)
Q Consensus       180 ~~~d~~g~tpL~~A~~~~~~~~i~~~l~~~~  210 (225)
                      +..+..|.||+|+|+..++. .++++|+..+
T Consensus        67 ~~~~~~~~~~l~~a~~~~~~-~~~~~L~~~~   96 (126)
T cd00204          67 NARDKDGNTPLHLAARNGNL-DVVKLLLKHG   96 (126)
T ss_pred             cccCCCCCCHHHHHHHcCcH-HHHHHHHHcC
Confidence            99999999999999999995 6666766653

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG0515|consensus

Probab=99.49  E-value=1.1e-13  Score=115.59  Aligned_cols=110  Identities=27%  Similarity=0.371  Sum_probs=94.6

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhhh
Q psy10604         65 YSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNI  144 (225)
Q Consensus        65 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~~  144 (225)
                      ..+..-.|.-|+..|-+++|+..+..-.|+..-+ ..|-|+||-|+-.||.+||+||++.|+++|..|.           
T Consensus       547 rfnPLaLLLDaaLeGEldlVq~~i~ev~DpSqpN-dEGITaLHNAiCaghyeIVkFLi~~ganVNa~DS-----------  614 (752)
T KOG0515|consen  547 RFNPLALLLDAALEGELDLVQRIIYEVTDPSQPN-DEGITALHNAICAGHYEIVKFLIEFGANVNAADS-----------  614 (752)
T ss_pred             ecchHHHHHhhhhcchHHHHHHHHHhhcCCCCCC-ccchhHHhhhhhcchhHHHHHHHhcCCcccCccC-----------
Confidence            3445556778999999999999999988888777 8899999999999999999999999999999986           


Q ss_pred             hhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCC-CCCCCChHHHHH
Q psy10604        145 HQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDA-STKKGNTALHIA  193 (225)
Q Consensus       145 ~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~-~d~~g~tpL~~A  193 (225)
                             +||||||+|+..++..+++.|++.|+-+-. .=.++.||..-+
T Consensus       615 -------dGWTPLHCAASCNnv~~ckqLVe~GaavfAsTlSDmeTa~eKC  657 (752)
T KOG0515|consen  615 -------DGWTPLHCAASCNNVPMCKQLVESGAAVFASTLSDMETAAEKC  657 (752)
T ss_pred             -------CCCchhhhhhhcCchHHHHHHHhccceEEeeecccccchhhhc
Confidence                   999999999999999999999999887743 334577777643

>KOG0515|consensus

Probab=99.49  E-value=6.4e-14  Score=116.93  Aligned_cols=94  Identities=31%  Similarity=0.410  Sum_probs=83.6

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhhhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC
Q psy10604        106 FLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKK  185 (225)
Q Consensus       106 Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~  185 (225)
                      |.-|+..|-.++|+.++..--++...+.                  .|.||||-|++.|+.+||++|+..|+++|..|.+
T Consensus       554 LLDaaLeGEldlVq~~i~ev~DpSqpNd------------------EGITaLHNAiCaghyeIVkFLi~~ganVNa~DSd  615 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTDPSQPND------------------EGITALHNAICAGHYEIVKFLIEFGANVNAADSD  615 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcCCCCCCc------------------cchhHHhhhhhcchhHHHHHHHhcCCcccCccCC
Confidence            4458899999999999988777777665                  8999999999999999999999999999999999


Q ss_pred             CChHHHHHHHcCChHHHHHHHhhcCCCCchHHH
Q psy10604        186 GNTALHIAALDSLVTDIASSAITDATSLPCSVI  218 (225)
Q Consensus       186 g~tpL~~A~~~~~~~~i~~~l~~~~~~~~~~~~  218 (225)
                      |+||||||+..++. .+.+.|+.+|+.+...++
T Consensus       616 GWTPLHCAASCNnv-~~ckqLVe~GaavfAsTl  647 (752)
T KOG0515|consen  616 GWTPLHCAASCNNV-PMCKQLVESGAAVFASTL  647 (752)
T ss_pred             CCchhhhhhhcCch-HHHHHHHhccceEEeeec
Confidence            99999999999995 788888888888765554

>KOG4214|consensus

Probab=99.49  E-value=1.5e-13  Score=89.52  Aligned_cols=90  Identities=20%  Similarity=0.339  Sum_probs=79.1

Q ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhhhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC
Q psy10604        104 TSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDAST  183 (225)
Q Consensus       104 t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d  183 (225)
                      --+.|++++|..+-|+..+..|.+++..-                   .|++|||+|+-.|+.++.++|+..|++++.+|
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~nVn~~~-------------------ggR~plhyAAD~GQl~ilefli~iGA~i~~kD   64 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGLNVNEIY-------------------GGRTPLHYAADYGQLSILEFLISIGANIQDKD   64 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHccccHHHHh-------------------CCcccchHhhhcchHHHHHHHHHhccccCCcc
Confidence            34689999999999999999998877543                   79999999999999999999999999999999


Q ss_pred             CCCChHHHHHHHcCChHHHHHHHhhcCCCC
Q psy10604        184 KKGNTALHIAALDSLVTDIASSAITDATSL  213 (225)
Q Consensus       184 ~~g~tpL~~A~~~~~~~~i~~~l~~~~~~~  213 (225)
                      +.|-|||-.|++.||.. .+++|+++|++.
T Consensus        65 KygITPLLsAvwEGH~~-cVklLL~~GAdr   93 (117)
T KOG4214|consen   65 KYGITPLLSAVWEGHRD-CVKLLLQNGADR   93 (117)
T ss_pred             ccCCcHHHHHHHHhhHH-HHHHHHHcCccc
Confidence            99999999999999964 556666666655

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.44  E-value=8.7e-13  Score=118.26  Aligned_cols=87  Identities=28%  Similarity=0.403  Sum_probs=79.9

Q ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhhhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC
Q psy10604        104 TSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDAST  183 (225)
Q Consensus       104 t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d  183 (225)
                      +.|+.|+..|+.+++++|++.|++++.++.                  .|+||||+|+..|+.+++++|+++|++++.+|
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadin~~d~------------------~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d  145 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADPNCRDY------------------DGRTPLHIACANGHVQVVRVLLEFGADPTLLD  145 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCC------------------CCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCC
Confidence            358899999999999999999999999886                  99999999999999999999999999999999


Q ss_pred             CCCChHHHHHHHcCChHHHHHHHhhc
Q psy10604        184 KKGNTALHIAALDSLVTDIASSAITD  209 (225)
Q Consensus       184 ~~g~tpL~~A~~~~~~~~i~~~l~~~  209 (225)
                      ..|.||||+|+..|+. .++++|+..
T Consensus       146 ~~G~TpLh~A~~~g~~-~iv~~Ll~~  170 (664)
T PTZ00322        146 KDGKTPLELAEENGFR-EVVQLLSRH  170 (664)
T ss_pred             CCCCCHHHHHHHCCcH-HHHHHHHhC
Confidence            9999999999999996 555666554

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.42  E-value=1.7e-12  Score=100.53  Aligned_cols=99  Identities=39%  Similarity=0.485  Sum_probs=89.6

Q ss_pred             cCcccCCCCchHHHHHHHcCC-----HHHHHHHHHcCC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCC
Q psy10604         60 PCYDCYSDPNTSFLRAARAGH-----LDKLRELLEAGV--DINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSN  132 (225)
Q Consensus        60 ~~~~~~~~g~t~L~~A~~~g~-----~~~v~~Ll~~g~--~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~  132 (225)
                      +....+.+|.||||+|+..|+     .++++.|++.|+  +.....+..|.||||+|+..|+.+++++|++.|++++..+
T Consensus        98 ~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~  177 (235)
T COG0666          98 DVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRN  177 (235)
T ss_pred             CcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCchhHHHHHcCchHHHHHHHhcCCCCcccc
Confidence            335578999999999999999     999999999999  4555533999999999999999999999999999999887


Q ss_pred             cchhhHHHHhhhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCC
Q psy10604        133 ATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGG  176 (225)
Q Consensus       133 ~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g  176 (225)
                      .                  .|.|++++|+..++.++++.++..+
T Consensus       178 ~------------------~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         178 S------------------YGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             c------------------CCCcchhhhcccchHHHHHHHHhcC
Confidence            5                  9999999999999999999999976

>KOG1710|consensus

Probab=99.38  E-value=4.9e-12  Score=98.74  Aligned_cols=95  Identities=29%  Similarity=0.328  Sum_probs=87.7

Q ss_pred             cccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHH
Q psy10604         62 YDCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQ  141 (225)
Q Consensus        62 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~  141 (225)
                      ...+..|.++|..|+..|+.+.|+.||+.|+|+|......++||||.|+.+|+.++.++|++.|+.+...+.        
T Consensus        39 n~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~dvcrllldaGa~~~~vNs--------  110 (396)
T KOG1710|consen   39 NQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQDVCRLLLDAGARMYLVNS--------  110 (396)
T ss_pred             hccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCchHHHHHHhccCccccccc--------
Confidence            345789999999999999999999999999999998878899999999999999999999999999998876        


Q ss_pred             hhhhhhccCCCCCcHHHHHHHcCCHHHHHHHHH
Q psy10604        142 LNIHQKNIKNNGLNALHLAAKDGHTTVVKALLK  174 (225)
Q Consensus       142 ~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~  174 (225)
                                -|+|+-..|+..|+.+||.++-.
T Consensus       111 ----------vgrTAaqmAAFVG~H~CV~iINN  133 (396)
T KOG1710|consen  111 ----------VGRTAAQMAAFVGHHECVAIINN  133 (396)
T ss_pred             ----------hhhhHHHHHHHhcchHHHHHHhc
Confidence                      89999999999999999887653

>KOG4369|consensus

Probab=99.22  E-value=6.7e-12  Score=112.86  Aligned_cols=148  Identities=22%  Similarity=0.353  Sum_probs=98.6

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcch---------
Q psy10604         65 YSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATS---------  135 (225)
Q Consensus        65 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~---------  135 (225)
                      ..+..|+|-.||..|+-|+|++|+..|+++..++ ..|.+||.+|+..||..+|+.|++..+++..+...+         
T Consensus       754 e~n~~t~LT~acaggh~e~vellv~rganiehrd-kkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlac  832 (2131)
T KOG4369|consen  754 EPNIKTNLTSACAGGHREEVELLVVRGANIEHRD-KKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLAC  832 (2131)
T ss_pred             CccccccccccccCccHHHHHHHHHhcccccccc-cccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEec
Confidence            3456789999999999999999999999999999 899999999999999999999999999888765411         


Q ss_pred             ----hhHHHHhhhhhhc---cCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCC--CCCCChHHHHHHHcCChHHHHHHH
Q psy10604        136 ----KKLDNQLNIHQKN---IKNNGLNALHLAAKDGHTTVVKALLKGGCKVDAS--TKKGNTALHIAALDSLVTDIASSA  206 (225)
Q Consensus       136 ----~~~~~~~~~~~~~---~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~--d~~g~tpL~~A~~~~~~~~i~~~l  206 (225)
                          +.+...+...+..   ++-...|||.+|..-|..+++..|+.+|+.++.+  .+.|-.||++|..+|+. .....|
T Consensus       833 sggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~-~at~~l  911 (2131)
T KOG4369|consen  833 SGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQ-AATLSL  911 (2131)
T ss_pred             CCCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhcccc-HHHHHH
Confidence                1122222222221   1234456666666666666666666666555444  33455666666666663 333334


Q ss_pred             hhcCCCCc
Q psy10604        207 ITDATSLP  214 (225)
Q Consensus       207 ~~~~~~~~  214 (225)
                      +..|..++
T Consensus       912 l~~gsdiN  919 (2131)
T KOG4369|consen  912 LQPGSDIN  919 (2131)
T ss_pred             hcccchhc
Confidence            44444443

>KOG4369|consensus

Probab=99.19  E-value=3e-11  Score=108.78  Aligned_cols=150  Identities=23%  Similarity=0.303  Sum_probs=116.3

Q ss_pred             cCcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcc-----
Q psy10604         60 PCYDCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNAT-----  134 (225)
Q Consensus        60 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~-----  134 (225)
                      +....++.|.+||..|+-.||..+|+.|+++.++++...+..+.|+|.+||..|+.++|++|+..|++-..++..     
T Consensus       782 niehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsggr~~vvelLl~~gankehrnvsDytPl  861 (2131)
T KOG4369|consen  782 NIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSGGRTRVVELLLNAGANKEHRNVSDYTPL  861 (2131)
T ss_pred             cccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCCCcchHHHHHHHhhccccccchhhcCch
Confidence            334456778888888888889888998888888888877678888888888888888888888888765544331     


Q ss_pred             -------hhhHHHHhhhhhhccC-----CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCC-CCCCChHHHHHHHcCChHH
Q psy10604        135 -------SKKLDNQLNIHQKNIK-----NNGLNALHLAAKDGHTTVVKALLKGGCKVDAS-TKKGNTALHIAALDSLVTD  201 (225)
Q Consensus       135 -------~~~~~~~~~~~~~~~d-----~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~-d~~g~tpL~~A~~~~~~~~  201 (225)
                             ...+.+.+...+..+.     .-|..||++|..+|+...++.|++.|.|+|.. .-+-+|+|.+|+..|+.+.
T Consensus       862 sla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~ev  941 (2131)
T KOG4369|consen  862 SLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEV  941 (2131)
T ss_pred             hhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeeccccCcchH
Confidence                   1234444555554443     45889999999999999999999999999876 4456899999999999877


Q ss_pred             HHHHHhhc
Q psy10604        202 IASSAITD  209 (225)
Q Consensus       202 i~~~l~~~  209 (225)
                      +..+|-.+
T Consensus       942 v~lLLa~~  949 (2131)
T KOG4369|consen  942 VFLLLAAQ  949 (2131)
T ss_pred             HHHHHHHh
Confidence            66666554

>KOG0783|consensus

Probab=99.15  E-value=1.9e-11  Score=107.09  Aligned_cols=79  Identities=25%  Similarity=0.308  Sum_probs=46.7

Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhhhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCC
Q psy10604        100 SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKV  179 (225)
Q Consensus       100 ~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~  179 (225)
                      ..|+|+||+|+..+...++++|+++|+++..+|.                 ..|+||||-|...|+++|+.+|+++|+..
T Consensus        50 ~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~-----------------ESG~taLHRaiyyG~idca~lLL~~g~SL  112 (1267)
T KOG0783|consen   50 RYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDE-----------------ESGYTALHRAIYYGNIDCASLLLSKGRSL  112 (1267)
T ss_pred             hhccceeeeeeccchhHHHHHHHhcCceeeeccc-----------------cccchHhhHhhhhchHHHHHHHHhcCCce
Confidence            4556666666666666666666666666655555                 35666666666666666666666666555


Q ss_pred             CCCCCCCChHHHHHHH
Q psy10604        180 DASTKKGNTALHIAAL  195 (225)
Q Consensus       180 ~~~d~~g~tpL~~A~~  195 (225)
                      ..+|.+|..||+..++
T Consensus       113 ~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  113 RIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             EEecccCCCHHHHHhh
Confidence            5566666666655544

>KOG0818|consensus

Probab=99.10  E-value=5.5e-10  Score=93.05  Aligned_cols=86  Identities=24%  Similarity=0.392  Sum_probs=80.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhhhhhhccC
Q psy10604         71 SFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIK  150 (225)
Q Consensus        71 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~d  150 (225)
                      -||.+++.|+.+++-.||..|+++|......|.||||.|++.|+..-+++|+-+|++++.++.                 
T Consensus       136 QLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~-----------------  198 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDS-----------------  198 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCC-----------------
Confidence            389999999999999999999999999988999999999999999999999999999999997                 


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHH
Q psy10604        151 NNGLNALHLAAKDGHTTVVKALLK  174 (225)
Q Consensus       151 ~~g~t~L~~A~~~~~~~~~~~Ll~  174 (225)
                       +|.||+.+|-..|+-++.+-|++
T Consensus       199 -~GmtP~~~AR~~gH~~laeRl~e  221 (669)
T KOG0818|consen  199 -SGMTPVDYARQGGHHELAERLVE  221 (669)
T ss_pred             -CCCcHHHHHHhcCchHHHHHHHH
Confidence             99999999999999887776664

>KOG0506|consensus

Probab=99.05  E-value=3.9e-10  Score=93.49  Aligned_cols=95  Identities=31%  Similarity=0.373  Sum_probs=87.0

Q ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCcchhhHHHHh
Q psy10604         64 CYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEA-GVDINTSNATSKKLDNQL  142 (225)
Q Consensus        64 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~-g~~~~~~~~~~~~~~~~~  142 (225)
                      ...++...+++|+..|++..++.+.-.|.|+...| ++.+|+||.|+..|+.+++++|++. +.+++.+|.         
T Consensus       502 ~~~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~D-yD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDR---------  571 (622)
T KOG0506|consen  502 RENDTVINVMYAAKNGDLSALRRFALQGMDLETKD-YDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDR---------  571 (622)
T ss_pred             ccccchhhhhhhhhcCCHHHHHHHHHhcccccccc-cccchhheeecccCceeHHHHHHHHHcCCCChhhc---------
Confidence            34556778999999999999999999999999999 9999999999999999999999976 889998886         


Q ss_pred             hhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCC
Q psy10604        143 NIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGC  177 (225)
Q Consensus       143 ~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga  177 (225)
                               +|+|||.-|...++.+++++|-+.-.
T Consensus       572 ---------w~rtPlDdA~~F~h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  572 ---------WGRTPLDDAKHFKHKEVVKLLEEAQY  597 (622)
T ss_pred             ---------cCCCcchHhHhcCcHHHHHHHHHHhc
Confidence                     99999999999999999999987633

>KOG0818|consensus

Probab=98.98  E-value=3.4e-09  Score=88.42  Aligned_cols=83  Identities=25%  Similarity=0.322  Sum_probs=76.0

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhhhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC
Q psy10604        106 FLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKK  185 (225)
Q Consensus       106 Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~  185 (225)
                      ||-+++.|+.+..--|+..|+++|+..-                 ..|.||||.|+..|+.--+++|+-+|||+..+|.+
T Consensus       137 LhasvRt~nlet~LRll~lGA~~N~~hp-----------------ekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~  199 (669)
T KOG0818|consen  137 LHSSVRTGNLETCLRLLSLGAQANFFHP-----------------EKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSS  199 (669)
T ss_pred             HHHHhhcccHHHHHHHHHcccccCCCCc-----------------ccCCchhHHHHhccchhhhhHHhhccCCCCCCCCC
Confidence            8999999999999999999999998875                 47999999999999999999999999999999999


Q ss_pred             CChHHHHHHHcCChHHHHHHH
Q psy10604        186 GNTALHIAALDSLVTDIASSA  206 (225)
Q Consensus       186 g~tpL~~A~~~~~~~~i~~~l  206 (225)
                      |.||+.+|-..||- .++..|
T Consensus       200 GmtP~~~AR~~gH~-~laeRl  219 (669)
T KOG0818|consen  200 GMTPVDYARQGGHH-ELAERL  219 (669)
T ss_pred             CCcHHHHHHhcCch-HHHHHH
Confidence            99999999999994 555444

>PF13606 Ank_3: Ankyrin repeat

Probab=98.97  E-value=1.1e-09  Score=57.39  Aligned_cols=28  Identities=39%  Similarity=0.589  Sum_probs=19.1

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCCC
Q psy10604        102 PNTSFLRAARAGHLDKLRELLEAGVDIN  129 (225)
Q Consensus       102 g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~  129 (225)
                      |+||||+||..|+.+++++|++.|++++
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            6667777777777777777776666665

>KOG0783|consensus

Probab=98.96  E-value=4.2e-10  Score=98.91  Aligned_cols=81  Identities=23%  Similarity=0.293  Sum_probs=76.4

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhhh
Q psy10604         65 YSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNI  144 (225)
Q Consensus        65 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~~  144 (225)
                      +.-|+|+||.|+..|..+++++||.+|+|++..|...|+||||.|+.+|+.+++-+|+.+|.....+|.           
T Consensus        49 D~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dk-----------  117 (1267)
T KOG0783|consen   49 DRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDK-----------  117 (1267)
T ss_pred             HhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecc-----------
Confidence            567999999999999999999999999999999989999999999999999999999999999999886           


Q ss_pred             hhhccCCCCCcHHHHHHHc
Q psy10604        145 HQKNIKNNGLNALHLAAKD  163 (225)
Q Consensus       145 ~~~~~d~~g~t~L~~A~~~  163 (225)
                             .|.+||.+-++-
T Consensus       118 -------eglsplq~~~r~  129 (1267)
T KOG0783|consen  118 -------EGLSPLQFLSRV  129 (1267)
T ss_pred             -------cCCCHHHHHhhc
Confidence                   999999987763

>PF13606 Ank_3: Ankyrin repeat

Probab=98.96  E-value=1.2e-09  Score=57.19  Aligned_cols=30  Identities=50%  Similarity=0.748  Sum_probs=27.9

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCCCCC
Q psy10604        152 NGLNALHLAAKDGHTTVVKALLKGGCKVDA  181 (225)
Q Consensus       152 ~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~  181 (225)
                      +|+||||+|+..|+.+++++|+++|+|++.
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~   30 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA   30 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence            589999999999999999999999999873

>KOG0522|consensus

Probab=98.93  E-value=2.7e-09  Score=89.72  Aligned_cols=101  Identities=24%  Similarity=0.313  Sum_probs=80.8

Q ss_pred             CHHHHHHHcCCHHHHHH-HHHC-CCCCCCCCcchhhHHHHhhhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCC
Q psy10604        104 TSFLRAARAGHLDKLRE-LLEA-GVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDA  181 (225)
Q Consensus       104 t~Lh~A~~~~~~~iv~~-Ll~~-g~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~  181 (225)
                      .|||+++.....+-... |... +..++..|.                  .|.||||+|+..|+...++.|+.+|+++..
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~------------------~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~   83 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDP------------------PGRTPLHLAVRLGHVEAARILLSAGADVSI   83 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccC------------------CCCccHHHHHHhcCHHHHHHHHhcCCCccc
Confidence            45999998876655444 3322 445555554                  899999999999999999999999999999


Q ss_pred             CCCCCChHHHHHHHcCChHHHHHHHhhcCCCCchHHHHhhhh
Q psy10604        182 STKKGNTALHIAALDSLVTDIASSAITDATSLPCSVILRTLR  223 (225)
Q Consensus       182 ~d~~g~tpL~~A~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~  223 (225)
                      +|..|++|||-|+..|+ +.++..++++....+...++++..
T Consensus        84 kN~~gWs~L~EAv~~g~-~q~i~~vlr~~~~q~~~~~~~~~p  124 (560)
T KOG0522|consen   84 KNNEGWSPLHEAVSTGN-EQIITEVLRHLKYQAWEKWERRLP  124 (560)
T ss_pred             cccccccHHHHHHHcCC-HHHHHHHHHHhHHHHHHHHHhcch
Confidence            99999999999999999 567777777777777777776543

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.92  E-value=2.7e-09  Score=57.35  Aligned_cols=33  Identities=42%  Similarity=0.702  Sum_probs=30.9

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCC
Q psy10604        152 NGLNALHLAAKDGHTTVVKALLKGGCKVDASTK  184 (225)
Q Consensus       152 ~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~  184 (225)
                      +|.||||+|+..|+.+++++|+++|++++.+|.
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence            589999999999999999999999999998874

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.87  E-value=3.7e-09  Score=56.83  Aligned_cols=31  Identities=42%  Similarity=0.580  Sum_probs=23.0

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCCCCCC
Q psy10604        102 PNTSFLRAARAGHLDKLRELLEAGVDINTSN  132 (225)
Q Consensus       102 g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~  132 (225)
                      |.||||+|+.+|+.+++++|++.|++++.++
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            6777777777777777777777777777654

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0705|consensus

Probab=98.86  E-value=1e-08  Score=87.01  Aligned_cols=91  Identities=32%  Similarity=0.413  Sum_probs=78.4

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCC---CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhhhhhhc
Q psy10604         72 FLRAARAGHLDKLRELLEAGVDIN---TSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKN  148 (225)
Q Consensus        72 L~~A~~~g~~~~v~~Ll~~g~~~~---~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~  148 (225)
                      |.-|+...++..+-.||.+|....   .....+|.|+||+||+.|++.+.++|+-+|+++..+|.               
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda---------------  692 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDA---------------  692 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceeccc---------------
Confidence            566777778888999999875322   22236789999999999999999999999999999996               


Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCC
Q psy10604        149 IKNNGLNALHLAAKDGHTTVVKALLKGGCKVD  180 (225)
Q Consensus       149 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~  180 (225)
                         .|+|||.||-..|..+|+++|+.+|+..+
T Consensus       693 ---~g~t~l~yar~a~sqec~d~llq~gcp~e  721 (749)
T KOG0705|consen  693 ---HGRTALFYARQAGSQECIDVLLQYGCPDE  721 (749)
T ss_pred             ---CCchhhhhHhhcccHHHHHHHHHcCCCcc
Confidence               99999999999999999999999998654

>KOG0782|consensus

Probab=98.80  E-value=2.6e-08  Score=84.62  Aligned_cols=113  Identities=25%  Similarity=0.297  Sum_probs=96.6

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC--CCCCCcchhhHHHHhhhhhhcc
Q psy10604         72 FLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVD--INTSNATSKKLDNQLNIHQKNI  149 (225)
Q Consensus        72 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~--~~~~~~~~~~~~~~~~~~~~~~  149 (225)
                      |..|+..+++--++..-.+|.++..++ .+-.+.||+|+..|+-+||++++++|..  .+..+                 
T Consensus       870 il~av~~~D~~klqE~h~~gg~ll~~~-~~~~sllh~a~~tg~~eivkyildh~p~elld~~d-----------------  931 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSLLIQG-PDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMAD-----------------  931 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCceEeeC-cchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHh-----------------
Confidence            566777777766777777898988887 7889999999999999999999999864  23223                 


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHH
Q psy10604        150 KNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIA  203 (225)
Q Consensus       150 d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~  203 (225)
                       ..|.|+||-|+..++..++.+|++.|+.....|..|.||-.-|-..|..+..+
T Consensus       932 -e~get~lhkaa~~~~r~vc~~lvdagasl~ktd~kg~tp~eraqqa~d~dlaa  984 (1004)
T KOG0782|consen  932 -ETGETALHKAACQRNRAVCQLLVDAGASLRKTDSKGKTPQERAQQAGDPDLAA  984 (1004)
T ss_pred             -hhhhHHHHHHHHhcchHHHHHHHhcchhheecccCCCChHHHHHhcCCchHHH
Confidence             58999999999999999999999999999999999999999999999864433

>KOG0506|consensus

Probab=98.77  E-value=8.9e-09  Score=85.60  Aligned_cols=90  Identities=30%  Similarity=0.390  Sum_probs=81.0

Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhhhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHC-CCC
Q psy10604        100 SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKG-GCK  178 (225)
Q Consensus       100 ~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~-ga~  178 (225)
                      .++..++++|++.|....++-+.-.|.++..+|.                  +.+|+||.|+..|+.+++++|+.. +.+
T Consensus       504 ~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~Dy------------------D~RTaLHvAAaEG~v~v~kfl~~~~kv~  565 (622)
T KOG0506|consen  504 NDTVINVMYAAKNGDLSALRRFALQGMDLETKDY------------------DDRTALHVAAAEGHVEVVKFLLNACKVD  565 (622)
T ss_pred             ccchhhhhhhhhcCCHHHHHHHHHhccccccccc------------------ccchhheeecccCceeHHHHHHHHHcCC
Confidence            3556789999999999999999989999999986                  899999999999999999999987 999


Q ss_pred             CCCCCCCCChHHHHHHHcCChHHHHHHHhh
Q psy10604        179 VDASTKKGNTALHIAALDSLVTDIASSAIT  208 (225)
Q Consensus       179 ~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~  208 (225)
                      ++.+|..|+|||+-|...+|. .++++|.+
T Consensus       566 ~~~kDRw~rtPlDdA~~F~h~-~v~k~L~~  594 (622)
T KOG0506|consen  566 PDPKDRWGRTPLDDAKHFKHK-EVVKLLEE  594 (622)
T ss_pred             CChhhccCCCcchHhHhcCcH-HHHHHHHH
Confidence            999999999999999999995 56666543

>KOG0522|consensus

Probab=98.69  E-value=6e-08  Score=81.81  Aligned_cols=87  Identities=28%  Similarity=0.439  Sum_probs=72.5

Q ss_pred             hHHHHHHHcCCHHHHHH-HHH-cCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhhhhhh
Q psy10604         70 TSFLRAARAGHLDKLRE-LLE-AGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQK  147 (225)
Q Consensus        70 t~L~~A~~~g~~~~v~~-Ll~-~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~  147 (225)
                      .|+|+++.....+-... |.. .+..++.++ ..|.||||+|+..|+.+.++.|+..|+++..++.              
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D-~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~--------------   86 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRD-PPGRTPLHLAVRLGHVEAARILLSAGADVSIKNN--------------   86 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceecccc-CCCCccHHHHHHhcCHHHHHHHHhcCCCcccccc--------------
Confidence            46899998887655444 333 345677777 8899999999999999999999999999998885              


Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHC
Q psy10604        148 NIKNNGLNALHLAAKDGHTTVVKALLKG  175 (225)
Q Consensus       148 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~  175 (225)
                          .||+|||-|+..|+..++..++.+
T Consensus        87 ----~gWs~L~EAv~~g~~q~i~~vlr~  110 (560)
T KOG0522|consen   87 ----EGWSPLHEAVSTGNEQIITEVLRH  110 (560)
T ss_pred             ----ccccHHHHHHHcCCHHHHHHHHHH
Confidence                999999999999999888777754

>KOG0705|consensus

Probab=98.59  E-value=1.5e-07  Score=80.16  Aligned_cols=101  Identities=27%  Similarity=0.309  Sum_probs=78.4

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhhhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC
Q psy10604        106 FLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKK  185 (225)
Q Consensus       106 Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~  185 (225)
                      |..|+.......+-+|+.+|........              ..+..|.|+||+|++.|+..+.++|+=+|+|+..+|.+
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t--------------~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~  693 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNET--------------CGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAH  693 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhcc--------------ccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccC
Confidence            4446666666677788888765432211              11247899999999999999999999999999999999


Q ss_pred             CChHHHHHHHcCChHHHHHHHhhcCCCCchHHHHhh
Q psy10604        186 GNTALHIAALDSLVTDIASSAITDATSLPCSVILRT  221 (225)
Q Consensus       186 g~tpL~~A~~~~~~~~i~~~l~~~~~~~~~~~~~~~  221 (225)
                      |+|||.||-..|. .+++..|++.|++=-|......
T Consensus       694 g~t~l~yar~a~s-qec~d~llq~gcp~e~~~~~~~  728 (749)
T KOG0705|consen  694 GRTALFYARQAGS-QECIDVLLQYGCPDECGLPAET  728 (749)
T ss_pred             CchhhhhHhhccc-HHHHHHHHHcCCCccccccCCC
Confidence            9999999999999 5677788888877666555443

>KOG0782|consensus

Probab=98.50  E-value=3.7e-07  Score=77.80  Aligned_cols=96  Identities=17%  Similarity=0.225  Sum_probs=83.9

Q ss_pred             CcccCCCCchHHHHHHHcCCHHHHHHHHHcCCC--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhH
Q psy10604         61 CYDCYSDPNTSFLRAARAGHLDKLRELLEAGVD--INTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKL  138 (225)
Q Consensus        61 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~  138 (225)
                      -..++.+..+.||+|+..|+-++|+|+|++|..  ++..+ ..|.|+||.|+-.++..+.++|++.|+.....|.     
T Consensus       892 ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~d-e~get~lhkaa~~~~r~vc~~lvdagasl~ktd~-----  965 (1004)
T KOG0782|consen  892 LLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMAD-ETGETALHKAACQRNRAVCQLLVDAGASLRKTDS-----  965 (1004)
T ss_pred             eEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHh-hhhhHHHHHHHHhcchHHHHHHHhcchhheeccc-----
Confidence            334677889999999999999999999999864  33444 6799999999999999999999999999988775     


Q ss_pred             HHHhhhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHC
Q psy10604        139 DNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKG  175 (225)
Q Consensus       139 ~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~  175 (225)
                                   .|.||-.-|-..|..++.-+|-..
T Consensus       966 -------------kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  966 -------------KGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             -------------CCCChHHHHHhcCCchHHHHHhhh
Confidence                         899999999999999999888643

>KOG0521|consensus

Probab=98.47  E-value=1.8e-07  Score=84.62  Aligned_cols=91  Identities=25%  Similarity=0.313  Sum_probs=81.5

Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhhhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCC
Q psy10604        100 SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKV  179 (225)
Q Consensus       100 ~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~  179 (225)
                      ..|.|+||.|+.++..-++++|++.|++++..+.                  .|++|+|.+...|+...+..|+++|++.
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~------------------~g~~plh~~~~~g~~~~~~~ll~~~a~~  715 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGADVNALDS------------------KGRTPLHHATASGHTSIACLLLKRGADP  715 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCcchhhhc------------------cCCCcchhhhhhcccchhhhhccccccc
Confidence            4679999999999999999999999999999986                  8999999999999999999999999999


Q ss_pred             CCCCCCCChHHHHHHHcCChHHHHHHHhh
Q psy10604        180 DASTKKGNTALHIAALDSLVTDIASSAIT  208 (225)
Q Consensus       180 ~~~d~~g~tpL~~A~~~~~~~~i~~~l~~  208 (225)
                      +..+.+|.+|+++|....+.+.+..+.+.
T Consensus       716 ~a~~~~~~~~l~~a~~~~~~d~~~l~~l~  744 (785)
T KOG0521|consen  716 NAFDPDGKLPLDIAMEAANADIVLLLRLA  744 (785)
T ss_pred             cccCccCcchhhHHhhhccccHHHHHhhh
Confidence            99999999999999877665544444443

>KOG0520|consensus

Probab=98.47  E-value=2e-07  Score=84.33  Aligned_cols=123  Identities=21%  Similarity=0.154  Sum_probs=99.1

Q ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHh
Q psy10604         64 CYSDPNTSFLRAARAGHLDKLRELLEA-GVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQL  142 (225)
Q Consensus        64 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~  142 (225)
                      ....|++.+|.++..+..-+++.+++. |......+ .+|+..+|.|+..|..-.+......|..++.+|.         
T Consensus       570 ~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld-~d~qgV~hfca~lg~ewA~ll~~~~~~ai~i~D~---------  639 (975)
T KOG0520|consen  570 VNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELD-RDGQGVIHFCAALGYEWAFLPISADGVAIDIRDR---------  639 (975)
T ss_pred             CCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhc-ccCCChhhHhhhcCCceeEEEEeecccccccccC---------
Confidence            466789999999999999999999997 77777777 7899999996655555444444456888888886         


Q ss_pred             hhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCC------CCCCCCCChHHHHHHHcCChHHHHHHH
Q psy10604        143 NIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKV------DASTKKGNTALHIAALDSLVTDIASSA  206 (225)
Q Consensus       143 ~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~------~~~d~~g~tpL~~A~~~~~~~~i~~~l  206 (225)
                               .||||||||..+|+..++..|+..|++.      ......|.|+-.+|..+|+ .-+..+|
T Consensus       640 ---------~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~-~gia~~l  699 (975)
T KOG0520|consen  640 ---------NGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGH-KGIAGYL  699 (975)
T ss_pred             ---------CCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccc-cchHHHH
Confidence                     9999999999999999999999887764      3345568999999999998 4555444

>KOG0521|consensus

Probab=98.40  E-value=4.1e-07  Score=82.35  Aligned_cols=92  Identities=24%  Similarity=0.284  Sum_probs=82.7

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhhh
Q psy10604         65 YSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNI  144 (225)
Q Consensus        65 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~~  144 (225)
                      ...|.++||.|+..|..-+++.|+++|+++|.++ ..|.||||.+...|+...+..++++|++.+..+.           
T Consensus       653 ~~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d-~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~-----------  720 (785)
T KOG0521|consen  653 LCIGCSLLHVAVGTGDSGAVELLLQNGADVNALD-SKGRTPLHHATASGHTSIACLLLKRGADPNAFDP-----------  720 (785)
T ss_pred             hhcccchhhhhhccchHHHHHHHHhcCCcchhhh-ccCCCcchhhhhhcccchhhhhccccccccccCc-----------
Confidence            3456899999999999999999999999999999 9999999999999999999999999999999886           


Q ss_pred             hhhccCCCCCcHHHHHHHcCCHHHHHHHHHC
Q psy10604        145 HQKNIKNNGLNALHLAAKDGHTTVVKALLKG  175 (225)
Q Consensus       145 ~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~  175 (225)
                             .|.+|+++|....+.+.+-++...
T Consensus       721 -------~~~~~l~~a~~~~~~d~~~l~~l~  744 (785)
T KOG0521|consen  721 -------DGKLPLDIAMEAANADIVLLLRLA  744 (785)
T ss_pred             -------cCcchhhHHhhhccccHHHHHhhh
Confidence                   999999999888777766555433

>KOG3609|consensus

Probab=98.30  E-value=4.1e-06  Score=74.69  Aligned_cols=117  Identities=21%  Similarity=0.162  Sum_probs=86.9

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHcC----CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhh
Q psy10604         68 PNTSFLRAARAGHLDKLRELLEAG----VDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLN  143 (225)
Q Consensus        68 g~t~L~~A~~~g~~~~v~~Ll~~g----~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~  143 (225)
                      +......|+..|+...|+..++..    .++|+.| .-|+++|++|+.+.+.++.++|++.+..+  .            
T Consensus        25 ~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d-~lGr~al~iai~nenle~~eLLl~~~~~~--g------------   89 (822)
T KOG3609|consen   25 GEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRD-PLGRLALHIAIDNENLELQELLLDTSSEE--G------------   89 (822)
T ss_pred             hhHHHHHHHHcCChHHHHHHHHhccccccchhccC-hHhhhceecccccccHHHHHHHhcCcccc--c------------
Confidence            445577899999999999888843    4577888 88999999999999999999999876544  2            


Q ss_pred             hhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCC----------CCCCCCCChHHHHHHHcCChHHHHHHHhhcC
Q psy10604        144 IHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKV----------DASTKKGNTALHIAALDSLVTDIASSAITDA  210 (225)
Q Consensus       144 ~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~----------~~~d~~g~tpL~~A~~~~~~~~i~~~l~~~~  210 (225)
                                 .+|-+|+..|..+++++++.+-...          ...-..+-||+.+|++.+++|.+..+|.+++
T Consensus        90 -----------dALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~  155 (822)
T KOG3609|consen   90 -----------DALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGH  155 (822)
T ss_pred             -----------hHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCC
Confidence                       4788888888888888888763332          1223346788888888888854444444433

>KOG2384|consensus

Probab=98.24  E-value=3.9e-06  Score=62.32  Aligned_cols=64  Identities=27%  Similarity=0.380  Sum_probs=33.2

Q ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCCCcchhhHHHHhhhhhhccCCCCCcHHHHHHHcCCHHHHHH
Q psy10604         93 DINTSNASDPNTSFLRAARAGHLDKLRELLEAG-VDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKA  171 (225)
Q Consensus        93 ~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g-~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~  171 (225)
                      ++|.+| ..|+|+|+.|+..|+.+.+.+|+.+| +.+...+.                  .|.+++.+|-..|..++++.
T Consensus         4 ~in~rD-~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~------------------ssldaaqlaek~g~~~fvh~   64 (223)
T KOG2384|consen    4 NINARD-AFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDE------------------SSLDAAQLAEKGGAQAFVHS   64 (223)
T ss_pred             Cccchh-hhcchHHHHHhhhcchhHHHHHhccCccccccccc------------------ccchHHHHHHhcChHHHHHH
Confidence            444454 45555555555555555555555555 44444443                  45555555555555555555


Q ss_pred             HHHC
Q psy10604        172 LLKG  175 (225)
Q Consensus       172 Ll~~  175 (225)
                      |.+.
T Consensus        65 lfe~   68 (223)
T KOG2384|consen   65 LFEN   68 (223)
T ss_pred             HHHH
Confidence            5544

>KOG0511|consensus

Probab=98.20  E-value=8.9e-06  Score=66.45  Aligned_cols=62  Identities=32%  Similarity=0.499  Sum_probs=57.3

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC
Q psy10604         68 PNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINT  130 (225)
Q Consensus        68 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~  130 (225)
                      ...-|..||+.|..+.|++|++.|.++|.++ .....||.+|+..||.++|++|+++|+-...
T Consensus        36 ~f~elceacR~GD~d~v~~LVetgvnVN~vD-~fD~spL~lAsLcGHe~vvklLLenGAiC~r   97 (516)
T KOG0511|consen   36 PFGELCEACRAGDVDRVRYLVETGVNVNAVD-RFDSSPLYLASLCGHEDVVKLLLENGAICSR   97 (516)
T ss_pred             chHHHHHHhhcccHHHHHHHHHhCCCcchhh-cccccHHHHHHHcCcHHHHHHHHHcCCcccc
Confidence            3556899999999999999999999999999 8889999999999999999999999987653

>KOG0511|consensus

Probab=98.06  E-value=1.7e-05  Score=64.83  Aligned_cols=75  Identities=35%  Similarity=0.485  Sum_probs=64.7

Q ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhhhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCC
Q psy10604        103 NTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDAS  182 (225)
Q Consensus       103 ~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~  182 (225)
                      .--|..||+.|..+.|+.|++.|.++|..|.                  +.++||.+|+-.|+.+.+++|+++||--..-
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnVN~vD~------------------fD~spL~lAsLcGHe~vvklLLenGAiC~rd   98 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNVNAVDR------------------FDSSPLYLASLCGHEDVVKLLLENGAICSRD   98 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCcchhhc------------------ccccHHHHHHHcCcHHHHHHHHHcCCccccc
Confidence            4568899999999999999999999999986                  8999999999999999999999999987665


Q ss_pred             CCCCChHHHHHHHc
Q psy10604        183 TKKGNTALHIAALD  196 (225)
Q Consensus       183 d~~g~tpL~~A~~~  196 (225)
                      ...|..++ |++.+
T Consensus        99 tf~G~RC~-YgaLn  111 (516)
T KOG0511|consen   99 TFDGDRCH-YGALN  111 (516)
T ss_pred             ccCcchhh-hhhhh
Confidence            66676665 44444

>KOG2384|consensus

Probab=97.99  E-value=2e-05  Score=58.59  Aligned_cols=56  Identities=25%  Similarity=0.239  Sum_probs=50.5

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCChHHHHHHHcCChHHHHHHH
Q psy10604        150 KNNGLNALHLAAKDGHTTVVKALLKGG-CKVDASTKKGNTALHIAALDSLVTDIASSA  206 (225)
Q Consensus       150 d~~g~t~L~~A~~~~~~~~~~~Ll~~g-a~~~~~d~~g~tpL~~A~~~~~~~~i~~~l  206 (225)
                      |..||||++.|++.|..+.+.+|+.+| +++...|..|.+++.+|-..|.. .++..|
T Consensus         9 D~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~-~fvh~l   65 (223)
T KOG2384|consen    9 DAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQ-AFVHSL   65 (223)
T ss_pred             hhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChH-HHHHHH
Confidence            349999999999999999999999999 89999999999999999999995 455444

>KOG3609|consensus

Probab=97.78  E-value=6.5e-05  Score=67.25  Aligned_cols=104  Identities=17%  Similarity=0.136  Sum_probs=78.4

Q ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhh
Q psy10604         64 CYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLN  143 (225)
Q Consensus        64 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~  143 (225)
                      .+.-|.++|+.|..+-+.+++++|++.+...        ..+|.+|+..|...+|+.++.+-..........       .
T Consensus        58 ~d~lGr~al~iai~nenle~~eLLl~~~~~~--------gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~-------d  122 (822)
T KOG3609|consen   58 RDPLGRLALHIAIDNENLELQELLLDTSSEE--------GDALLLAIAVGSVPLVELLLVHFVDAPYLERSG-------D  122 (822)
T ss_pred             cChHhhhceecccccccHHHHHHHhcCcccc--------chHHHHHHHHHHHHHHHHHHhcccccchhcccc-------c
Confidence            4677999999999999999999999987543        458999999999999999998743322111100       0


Q ss_pred             hhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC
Q psy10604        144 IHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDAST  183 (225)
Q Consensus       144 ~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d  183 (225)
                      ...+ .=.-+.|||.+|+..++++|+++|+.+|+.+..+-
T Consensus       123 ~~~~-~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~PH  161 (822)
T KOG3609|consen  123 ANSP-HFTPDITPLMLAAHLNNFEILQCLLTRGHCIPIPH  161 (822)
T ss_pred             cCcc-cCCCCccHHHHHHHhcchHHHHHHHHcCCCCCCCc
Confidence            0000 00256799999999999999999999999986543

>KOG0520|consensus

Probab=97.72  E-value=2e-05  Score=71.79  Aligned_cols=89  Identities=17%  Similarity=0.109  Sum_probs=71.5

Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCcchhhHHHHhhhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHC-CC
Q psy10604        100 SDPNTSFLRAARAGHLDKLRELLEA-GVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKG-GC  177 (225)
Q Consensus       100 ~~g~t~Lh~A~~~~~~~iv~~Ll~~-g~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~-ga  177 (225)
                      ..|+|.+|+++..+....++.+++. |......+.                  .|...+|+ |..++.+++-+|+.. |.
T Consensus       572 ~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~------------------d~qgV~hf-ca~lg~ewA~ll~~~~~~  632 (975)
T KOG0520|consen  572 FRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDR------------------DGQGVIHF-CAALGYEWAFLPISADGV  632 (975)
T ss_pred             CcchHHHHHHHHHhHHHHHHHHhcccccCchhhcc------------------cCCChhhH-hhhcCCceeEEEEeeccc
Confidence            6789999999999999999999986 555554553                  67778888 667777877777654 89


Q ss_pred             CCCCCCCCCChHHHHHHHcCChHHHHHHHhh
Q psy10604        178 KVDASTKKGNTALHIAALDSLVTDIASSAIT  208 (225)
Q Consensus       178 ~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~  208 (225)
                      .++.+|..|+||||||+..|+. .++..|++
T Consensus       633 ai~i~D~~G~tpL~wAa~~G~e-~l~a~l~~  662 (975)
T KOG0520|consen  633 AIDIRDRNGWTPLHWAAFRGRE-KLVASLIE  662 (975)
T ss_pred             ccccccCCCCcccchHhhcCHH-HHHHHHHH
Confidence            9999999999999999999995 44444444

>KOG2505|consensus

Probab=97.71  E-value=7.9e-05  Score=62.98  Aligned_cols=91  Identities=22%  Similarity=0.221  Sum_probs=65.5

Q ss_pred             HHHHHHHHHCCCCCCCCCcchhhHHHHhhhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHH
Q psy10604        115 LDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA  194 (225)
Q Consensus       115 ~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~  194 (225)
                      ...+++|.+.+.+.|..-.            .-..+.-..|+||+|+.+|..+++.+|++.|+|+...|..|+||..++.
T Consensus       404 p~~ie~lken~lsgnf~~~------------pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVT------------PEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhcCCccccccc------------ccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            5677888888777654332            0011234679999999999999999999999999999999999998877


Q ss_pred             HcCChHHHH-HHHhhcCCCCchHHHHhh
Q psy10604        195 LDSLVTDIA-SSAITDATSLPCSVILRT  221 (225)
Q Consensus       195 ~~~~~~~i~-~~l~~~~~~~~~~~~~~~  221 (225)
                       +   ..|. .++.+..-+.+++.|.++
T Consensus       472 -n---kdVk~~F~a~~~l~es~~nW~~t  495 (591)
T KOG2505|consen  472 -N---KDVKSIFIARRVLNESFGNWART  495 (591)
T ss_pred             -c---HHHHHHHHHHHHhcccccchhhh
Confidence             2   2333 333445555666666654

>smart00248 ANK ankyrin repeats

Probab=97.39  E-value=0.00043  Score=34.39  Aligned_cols=27  Identities=37%  Similarity=0.551  Sum_probs=16.5

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCC
Q psy10604        102 PNTSFLRAARAGHLDKLRELLEAGVDI  128 (225)
Q Consensus       102 g~t~Lh~A~~~~~~~iv~~Ll~~g~~~  128 (225)
                      |.||+|+|+..++.++++.|++.+.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            456666666666666666666655543

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=97.35  E-value=0.00051  Score=34.12  Aligned_cols=29  Identities=45%  Similarity=0.748  Sum_probs=24.9

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCCCC
Q psy10604        152 NGLNALHLAAKDGHTTVVKALLKGGCKVD  180 (225)
Q Consensus       152 ~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~  180 (225)
                      .|.||+|+|+..++.++++.|+..|.+++
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~~   29 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGADIN   29 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            36799999999999999999999888664

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505|consensus

Probab=97.23  E-value=0.00051  Score=58.25  Aligned_cols=44  Identities=25%  Similarity=0.274  Sum_probs=40.7

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHc
Q psy10604         68 PNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARA  112 (225)
Q Consensus        68 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~  112 (225)
                      ..|+||+|+..|.-.+|.+||++|+|+...+ ..|.||..++...
T Consensus       430 tsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd-~~Grtpy~ls~nk  473 (591)
T KOG2505|consen  430 TSTFLHYAAAQGARKCVKYFLEEGCDPSTKD-GAGRTPYSLSANK  473 (591)
T ss_pred             cchHHHHHHhcchHHHHHHHHHhcCCchhcc-cCCCCcccccccH
Confidence            5799999999999999999999999999999 8999999998733

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=94.45  E-value=0.32  Score=37.76  Aligned_cols=29  Identities=31%  Similarity=0.292  Sum_probs=26.3

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHCCCCC
Q psy10604        151 NNGLNALHLAAKDGHTTVVKALLKGGCKV  179 (225)
Q Consensus       151 ~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~  179 (225)
                      +.|.|-|.-|+..++.+++.+|+++||-.
T Consensus       252 NSGdtMLDNA~Ky~~~emi~~Llk~GA~~  280 (284)
T PF06128_consen  252 NSGDTMLDNAMKYKNSEMIAFLLKYGAIS  280 (284)
T ss_pred             CCcchHHHhHHhcCcHHHHHHHHHcCccc
Confidence            58999999999999999999999999843

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=93.59  E-value=0.16  Score=32.43  Aligned_cols=48  Identities=15%  Similarity=0.138  Sum_probs=40.6

Q ss_pred             chHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC
Q psy10604         69 NTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEA  124 (225)
Q Consensus        69 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~  124 (225)
                      ...+..|...|+.++++.+++.+ .+       ....+..|+.+.+.+++++|++.
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~-~~-------~~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKN-KP-------DNDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHh-cc-------HHHHHHHHHHHhhHHHHHHHHHh
Confidence            45689999999999999999765 11       14579999999999999999986

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=91.95  E-value=1.4  Score=33.07  Aligned_cols=126  Identities=19%  Similarity=0.059  Sum_probs=73.3

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCc-------chhhHHHH---
Q psy10604         72 FLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNA-------TSKKLDNQ---  141 (225)
Q Consensus        72 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~-------~~~~~~~~---  141 (225)
                      +.-|+..+-.+++++.-+...+-   - ..+++.+-.||+..+.++|+|+-+.-.-.+..+.       ...++.+.   
T Consensus        50 l~HAVk~nmL~ILqkyke~L~~~---~-~~~q~LFElAC~~qkydiV~WI~qnL~i~~~~~iFdIA~~~kDlsLyslGY~  125 (192)
T PF03158_consen   50 LYHAVKYNMLSILQKYKEDLENE---R-YLNQELFELACEEQKYDIVKWIGQNLHIYNPEDIFDIAFAKKDLSLYSLGYK  125 (192)
T ss_pred             HHHHHHcCcHHHHHHHHHHhhcc---h-hHHHHHHHHHHHHccccHHHHHhhccCCCCchhhhhhhhhccchhHHHHHHH
Confidence            44577778888888776643321   1 3567778889999999999999554221111110       00000000   


Q ss_pred             --hhhhhhc--cC--CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHHhh
Q psy10604        142 --LNIHQKN--IK--NNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAIT  208 (225)
Q Consensus       142 --~~~~~~~--~d--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~  208 (225)
                        +....+.  .|  .--..-|.+|+..|....+.-.+++|.+++.      +.|..|+..++ -.|...+++
T Consensus       126 l~~~~~~~~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~~------~vls~Av~ynh-RkIL~yfi~  191 (192)
T PF03158_consen  126 LLFNRMMSEHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVDI------IVLSQAVKYNH-RKILDYFIR  191 (192)
T ss_pred             HHHhhcccccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCcccH------HHHHHHHHhhH-HHHHHHhhc
Confidence              0000000  00  0011346678888988888888888888764      78888888877 355555544

These proteins may be involved in promoting survival of infected macrophages [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=87.04  E-value=1.6  Score=27.76  Aligned_cols=48  Identities=15%  Similarity=0.225  Sum_probs=39.9

Q ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhhhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHC
Q psy10604        103 NTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKG  175 (225)
Q Consensus       103 ~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~  175 (225)
                      ...+..|+..|+.+|++.+++.+ .++                        ...+..|+..-+.+++++|++.
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~-~~~------------------------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKN-KPD------------------------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHh-ccH------------------------HHHHHHHHHHhhHHHHHHHHHh
Confidence            45689999999999999998765 221                        3579999999999999999976

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=84.81  E-value=2.7  Score=32.80  Aligned_cols=60  Identities=17%  Similarity=0.173  Sum_probs=45.1

Q ss_pred             hHHHHHHHc--CCHHHHHHHHHcC-CCCCCC--CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Q psy10604         70 TSFLRAARA--GHLDKLRELLEAG-VDINTS--NASDPNTSFLRAARAGHLDKLRELLEAGVDIN  129 (225)
Q Consensus        70 t~L~~A~~~--g~~~~v~~Ll~~g-~~~~~~--~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~  129 (225)
                      .-+-++...  .+..++++++++| +++|..  ....|.|-|--|++++..+++.+|+++|+-.+
T Consensus       217 ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~~~  281 (284)
T PF06128_consen  217 YDIEYLLSEHSASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAISG  281 (284)
T ss_pred             hhHHHHHhhcCCcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCcccc
Confidence            345555543  3568899999988 455442  12579999999999999999999999998543

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	225
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		1e-15
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		8e-06
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		2e-15
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		4e-15
2xee_A	157	Structural Determinants For Improved Thermal Stabil		5e-15
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		2e-13
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		3e-13
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		1e-12
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		3e-12
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		7e-12
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		8e-12
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		9e-12
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		9e-12
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		9e-12
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		1e-11
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		1e-11
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		1e-11
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		2e-11
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		3e-11
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-11
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		4e-11
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		8e-06
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		6e-11
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		8e-11
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		1e-10
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		1e-10
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		1e-10
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-10
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		5e-10
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		7e-10
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		9e-10
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		1e-09
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		1e-09
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		5e-09
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		1e-08
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		1e-08
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		3e-08
2xen_A	91	Structural Determinants For Improved Thermal Stabil		4e-08
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		5e-08
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		7e-08
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		9e-08
1uoh_A	226	Human Gankyrin Length = 226		1e-07
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		1e-07
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		2e-07
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		3e-07
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		3e-06
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		3e-05
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		4e-05
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		7e-05
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		9e-05
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		9e-05
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		9e-05
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		1e-04
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		1e-04
3deo_A	183	Structural Basis For Specific Substrate Recognition		4e-04
3ui2_A	244	Crystal Structure Of The Cpsrp54 Tail Bound To Cpsr		4e-04

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/125 (41%), Positives = 68/125 (54%), Gaps = 19/125 (15%)
Query: 70  TSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDIN 129
           T    AAR GHL+ ++ LLEAG D+N  +  +  T    AAR GHL+ ++ LLEAG D+N
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNAKD-KNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 130 TSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTA 189
             +                   NG   LHLAA++GH  VVK LL+ G  V+A  K G T 
Sbjct: 63  AKD------------------KNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTP 104
Query: 190 LHIAA 194
           LH+AA
Sbjct: 105 LHLAA 109

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 24/43 (55%), Positives = 29/43 (67%)
Query: 152 NGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
           NG   LHLAA++GH  VVK LL+ G  V+A  K G T LH+AA
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA 43

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/129 (38%), Positives = 67/129 (51%), Gaps = 19/129 (14%)
Query: 66  SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG 125
           SD     L AARAG  D++R L+  G D+N  +  D  T    AAR GHL+ +  LL+AG
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNAKD-KDGYTPLHLAAREGHLEIVEVLLKAG 70
Query: 126 VDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKK 185
            D+N  +                   +G   LHLAA++GH  +V+ LLK G  V+A  K 
Sbjct: 71  ADVNAKD------------------KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKD 112
Query: 186 GNTALHIAA 194
           G T LH+AA
Sbjct: 113 GYTPLHLAA 121

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 49/128 (38%), Positives = 66/128 (51%), Gaps = 19/128 (14%)
Query: 67  DPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGV 126
           D     L AARAG  D++R L+  G D+N  +  D  T    AAR GHL+ +  LL+AG 
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGADVNAKD-KDGYTPLHLAAREGHLEIVEVLLKAGA 59
Query: 127 DINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKG 186
           D+N  +                   +G   LHLAA++GH  +V+ LLK G  V+A  K G
Sbjct: 60  DVNAKD------------------KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 101
Query: 187 NTALHIAA 194
            T LH+AA
Sbjct: 102 YTPLHLAA 109

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/139 (36%), Positives = 70/139 (50%), Gaps = 20/139 (14%)
Query: 66  SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG 125
            D  T    AAR GHL+ +  LL+AG D+N  +  D  T    AAR GHL+ +  LL+AG
Sbjct: 33  KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD-KDGYTPLHLAAREGHLEIVEVLLKAG 91
Query: 126 VDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKK 185
            D+N  +                   +G   LHLAA++GH  +V+ LLK G  V+A  K 
Sbjct: 92  ADVNAKD------------------KDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKF 133
Query: 186 GNTALHIAALDSLVTDIAS 204
           G T   + A+D+   DIA 
Sbjct: 134 GKTPFDL-AIDNGNEDIAE 151

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/132 (36%), Positives = 67/132 (50%), Gaps = 19/132 (14%)
Query: 66  SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG 125
           SD     L AARAG  D++R L+  G D+N ++    +T    AA+ GHL+ +  LL+ G
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNATDWL-GHTPLHLAAKTGHLEIVEVLLKYG 70
Query: 126 VDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKK 185
            D+N  +                  N G   LHLAA +GH  +V+ LLK G  V+A   +
Sbjct: 71  ADVNAWD------------------NYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYE 112
Query: 186 GNTALHIAALDS 197
           G T LH+AA D 
Sbjct: 113 GFTPLHLAAYDG 124

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/129 (37%), Positives = 67/129 (51%), Gaps = 19/129 (14%)
Query: 66  SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG 125
           SD     L AARAG  D++R L+  G D+N ++ +D  T    AA  GHL+ +  LL+ G
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNATD-NDGYTPLHLAASNGHLEIVEVLLKNG 70
Query: 126 VDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKK 185
            D+N S+ T                  G+  LHLAA  GH  +V+ LLK G  V+A    
Sbjct: 71  ADVNASDLT------------------GITPLHLAAATGHLEIVEVLLKHGADVNAYDND 112
Query: 186 GNTALHIAA 194
           G+T LH+AA
Sbjct: 113 GHTPLHLAA 121

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/129 (37%), Positives = 65/129 (50%), Gaps = 19/129 (14%)
Query: 66  SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG 125
           SD     L AARAG  D++R L+  G D+N  +    +T    AAR GHL+ +  LL+ G
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNAEDTY-GDTPLHLAARVGHLEIVEVLLKNG 70
Query: 126 VDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKK 185
            D+N                   +  +G   LHLAAK GH  +V+ LLK G  V+A    
Sbjct: 71  ADVNA------------------LDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTI 112
Query: 186 GNTALHIAA 194
           G+T LH+AA
Sbjct: 113 GSTPLHLAA 121

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/129 (36%), Positives = 65/129 (50%), Gaps = 19/129 (14%)
Query: 66  SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG 125
           SD     L AARAG  D++R L+  G D+N  + +   T    AA  GHL+ +  LL+ G
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNARDFTGW-TPLHLAAHFGHLEIVEVLLKNG 70
Query: 126 VDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKK 185
            D+N  ++                   G+  LHLAA+ GH  +V+ LLK G  V+AS   
Sbjct: 71  ADVNAKDSL------------------GVTPLHLAARRGHLEIVEVLLKNGADVNASDSH 112
Query: 186 GNTALHIAA 194
           G T LH+AA
Sbjct: 113 GFTPLHLAA 121

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 67.4 bits (163), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 48/129 (37%), Positives = 64/129 (49%), Gaps = 19/129 (14%)
Query: 66  SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG 125
           SD     L AARAG  D++R L+  G D+N S+     T    AA  GHL+ +  LL+ G
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNASDHVGW-TPLHLAAYFGHLEIVEVLLKNG 70
Query: 126 VDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKK 185
            D+N  ++                   G+  LHLAA  GH  VV+ LLK G  V+A+   
Sbjct: 71  ADVNADDSL------------------GVTPLHLAADRGHLEVVEVLLKNGADVNANDHN 112
Query: 186 GNTALHIAA 194
           G T LH+AA
Sbjct: 113 GFTPLHLAA 121

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 67.0 bits (162), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 49/130 (37%), Positives = 65/130 (50%), Gaps = 19/130 (14%)
Query: 66  SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG 125
           SD     L AARAG  D++R L+  G D+N ++AS   T    AA  GHL+ +  LL+ G
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNATDASGL-TPLHLAATYGHLEIVEVLLKHG 70
Query: 126 VDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKK 185
            D+N                   I   G   LHLAA  GH  +V+ LLK G  V+A    
Sbjct: 71  ADVNA------------------IDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTW 112
Query: 186 GNTALHIAAL 195
           G+T LH+AA+
Sbjct: 113 GDTPLHLAAI 122

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 67.0 bits (162), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 49/130 (37%), Positives = 65/130 (50%), Gaps = 19/130 (14%)
Query: 66  SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG 125
           SD     L AARAG  D++R L+  G D+N ++AS   T    AA  GHL+ +  LL+ G
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNATDASGL-TPLHLAATYGHLEIVEVLLKHG 70
Query: 126 VDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKK 185
            D+N                   I   G   LHLAA  GH  +V+ LLK G  V+A    
Sbjct: 71  ADVNA------------------IDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTW 112
Query: 186 GNTALHIAAL 195
           G+T LH+AA+
Sbjct: 113 GDTPLHLAAI 122

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 66.6 bits (161), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 65/129 (50%), Gaps = 19/129 (14%)
Query: 66  SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG 125
           S+     + AA  G+ D++++L+E G D+N S+ SD  T    AA+ GH + ++ L+  G
Sbjct: 2   SELGKRLIEAAENGNKDRVKDLIENGADVNASD-SDGRTPLHYAAKEGHKEIVKLLISKG 60
Query: 126 VDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKK 185
            D+N  ++                  +G   LH AAK+GH  +VK L+  G  V+A    
Sbjct: 61  ADVNAKDS------------------DGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSD 102
Query: 186 GNTALHIAA 194
           G T LH AA
Sbjct: 103 GRTPLHYAA 111

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 66.6 bits (161), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 49/132 (37%), Positives = 66/132 (50%), Gaps = 23/132 (17%)
Query: 66  SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPN--TSFLRAARAGHLDKLRELLE 123
            D     L AA AG  D++R L+  G D+N   A+D N  T    AA  G L+ +  LL+
Sbjct: 4   QDLGKKLLEAAAAGQDDEVRILMANGADVN---ATDDNGLTPLHLAAANGQLEIVEVLLK 60
Query: 124 AGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDAST 183
            G D+N S++                   G+  LHLAA DGH  +V+ LLK G  V+A  
Sbjct: 61  NGADVNASDSA------------------GITPLHLAAYDGHLEIVEVLLKHGADVNAYD 102
Query: 184 KKGNTALHIAAL 195
           + G T LH+AAL
Sbjct: 103 RAGWTPLHLAAL 114

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/130 (36%), Positives = 67/130 (51%), Gaps = 19/130 (14%)
Query: 66  SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG 125
           SD     L AARAG  D++R L+  G D+N  +AS   T    AA  GHL+ +  LL+ G
Sbjct: 12  SDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGW-TPLHLAAFNGHLEIVEVLLKNG 70
Query: 126 VDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKK 185
            D+N                   + + G+  L LAA  GH  +V+ LLK G  V+A+  +
Sbjct: 71  ADVNA------------------VDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDME 112
Query: 186 GNTALHIAAL 195
           G+T LH+AA+
Sbjct: 113 GHTPLHLAAM 122

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/128 (36%), Positives = 63/128 (49%), Gaps = 19/128 (14%)
Query: 66  SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG 125
           SD     L AARAG  D++R L+  G D+N  +  D  T    AA+ GHL+ +  LL+ G
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNALD-EDGLTPLHLAAQLGHLEIVEVLLKYG 70
Query: 126 VDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKK 185
            D+N  +                  N G+  LHLAA  GH  +V+ LLK G  V+A  K 
Sbjct: 71  ADVNAED------------------NFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKF 112
Query: 186 GNTALHIA 193
           G TA  I+
Sbjct: 113 GKTAFDIS 120

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/129 (35%), Positives = 64/129 (49%), Gaps = 19/129 (14%)
Query: 66  SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG 125
           SD     L AARAG  D++R L+  G D+N ++ +   T    AA +GHL+ +  LL+ G
Sbjct: 12  SDLGRKLLEAARAGQDDEVRILMANGADVNAADNT-GTTPLHLAAYSGHLEIVEVLLKHG 70
Query: 126 VDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKK 185
            D++ S+                    G   LHLAA  GH  +V+ LLK G  V+A    
Sbjct: 71  ADVDASDVF------------------GYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSD 112
Query: 186 GNTALHIAA 194
           G T LH+AA
Sbjct: 113 GMTPLHLAA 121

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/143 (35%), Positives = 68/143 (47%), Gaps = 16/143 (11%)
Query: 66  SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG 125
           SD     L AARAG  D++R L+  G D+N  + S   T    AA  GHL+ +  LL+ G
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNAEDDS-GKTPLHLAAIKGHLEIVEVLLKHG 70
Query: 126 VDINTSNATSKK------LDNQLNIHQKNIKNN---------GLNALHLAAKDGHTTVVK 170
            D+N ++           L   L I +  +KN          G   LHLAA  GH  +V+
Sbjct: 71  ADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVE 130
Query: 171 ALLKGGCKVDASTKKGNTALHIA 193
            LLK G  V+A  K G TA  I+
Sbjct: 131 VLLKYGADVNAQDKFGKTAFDIS 153

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/143 (37%), Positives = 71/143 (49%), Gaps = 16/143 (11%)
Query: 66  SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG 125
           SD     L AARAG  D++R L+  G D+N ++     T    AA  GHL+ +  LL+ G
Sbjct: 12  SDLGKKLLEAARAGRDDEVRILMANGADVNAADVVGW-TPLHLAAYWGHLEIVEVLLKNG 70
Query: 126 VDIN---TSNATSKKLD---NQLNIHQKNIKN---------NGLNALHLAAKDGHTTVVK 170
            D+N   T  +T   L      L I +  +KN         NG+  LHLAA  GH  +V+
Sbjct: 71  ADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVE 130
Query: 171 ALLKGGCKVDASTKKGNTALHIA 193
            LLK G  V+A  K G TA  I+
Sbjct: 131 VLLKYGADVNAQDKFGKTAFDIS 153

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 62/123 (50%), Gaps = 19/123 (15%)
Query: 72  FLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTS 131
            + AA  G+ D++++LLE G D+N S+ SD  T    AA  GH + ++ LL  G D N  
Sbjct: 8   LIEAAENGNKDRVKDLLENGADVNASD-SDGKTPLHLAAENGHKEVVKLLLSQGADPNAK 66
Query: 132 NATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALH 191
           ++                  +G   LHLAA++GH  VVK LL  G   +A    G T LH
Sbjct: 67  DS------------------DGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLH 108
Query: 192 IAA 194
           +AA
Sbjct: 109 LAA 111

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 43/108 (39%), Positives = 57/108 (52%), Gaps = 19/108 (17%)
Query: 70  TSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDIN 129
           T    AAR GHL+ ++ LLEAG D+N  +  +  T    AAR GHL+ ++ LLEAG D+N
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNAKD-KNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 130 TSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGC 177
             +                   NG   LHLAA++GH  VVK LL+ G 
Sbjct: 63  AKD------------------KNGRTPLHLAARNGHLEVVKLLLEAGA 92

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 24/43 (55%), Positives = 29/43 (67%)
Query: 152 NGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
           NG   LHLAA++GH  VVK LL+ G  V+A  K G T LH+AA
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA 43

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 62/132 (46%), Gaps = 19/132 (14%)
Query: 66  SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG 125
           SD     L AARAG  D++R L+  G D+N ++     T        GHL+ +  LL+  
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNANDWFGI-TPLHLVVNNGHLEIIEVLLKYA 70
Query: 126 VDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKK 185
            D+N S+ +                  G   LHLAA  GH  +V+ LLK G  V+A   +
Sbjct: 71  ADVNASDKS------------------GWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQ 112
Query: 186 GNTALHIAALDS 197
           G T LH+AA D 
Sbjct: 113 GYTPLHLAAEDG 124

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 63.5 bits (153), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 45/129 (34%), Positives = 62/129 (48%), Gaps = 19/129 (14%)
Query: 66  SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG 125
           SD     L AARAG  D++R L+  G D+N  +    +T    AA  GH + +  LL+ G
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNAHD-DQGSTPLHLAAWIGHPEIVEVLLKHG 70
Query: 126 VDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKK 185
            D+N  +                   +G   LHLAA +GH  +V+ LLK G  V+A    
Sbjct: 71  ADVNARD------------------TDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAY 112
Query: 186 GNTALHIAA 194
           G T LH+AA
Sbjct: 113 GLTPLHLAA 121

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/129 (34%), Positives = 64/129 (49%), Gaps = 19/129 (14%)
Query: 66  SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG 125
           SD     L AARAG  D++R L+  G D+N  + +   T    AA +GHL+ +  LL+ G
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILIANGADVNAVDNTGL-TPLHLAAVSGHLEIVEVLLKHG 70
Query: 126 VDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKK 185
            D++ ++                    G   LHLAA  GH  +V+ LLK G  V+A    
Sbjct: 71  ADVDAADVY------------------GFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMT 112
Query: 186 GNTALHIAA 194
           G+T LH+AA
Sbjct: 113 GSTPLHLAA 121

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/128 (36%), Positives = 62/128 (48%), Gaps = 19/128 (14%)
Query: 66  SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG 125
           SD     L AARAG  D++R L+  G D+N +N    NT    AA   HL+ +  LL+ G
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVN-ANDRKGNTPLHLAADYDHLEIVEVLLKHG 70
Query: 126 VDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKK 185
            D+N  +                  N+G   LHLAA  GH  +V+ LLK G  V+A  K 
Sbjct: 71  ADVNAHD------------------NDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKF 112
Query: 186 GNTALHIA 193
           G TA  I+
Sbjct: 113 GKTAFDIS 120

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/133 (34%), Positives = 63/133 (47%), Gaps = 21/133 (15%)
Query: 61  CYDCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRE 120
            YD Y    T    AA  GHL+ +  LL  G D+N  + ++  T    AA  GHL+ +  
Sbjct: 30  AYDHYG--RTPLHMAAAVGHLEIVEVLLRNGADVNAVD-TNGTTPLHLAASLGHLEIVEV 86
Query: 121 LLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVD 180
           LL+ G D+N  +AT                  G+  L+LAA  GH  +V+ LLK G  V+
Sbjct: 87  LLKYGADVNAKDAT------------------GITPLYLAAYWGHLEIVEVLLKHGADVN 128
Query: 181 ASTKKGNTALHIA 193
           A  K G TA  I+
Sbjct: 129 AQDKFGKTAFDIS 141

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 62/123 (50%), Gaps = 19/123 (15%)
Query: 72  FLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTS 131
            + AA  G+ D++++L+E G D+N S+ SD  T    AA  GH + ++ L+  G D+N  
Sbjct: 8   LIEAAENGNKDRVKDLIENGADVNASD-SDGRTPLHHAAENGHKEVVKLLISKGADVNAK 66
Query: 132 NATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALH 191
           ++                  +G   LH AA++GH  VVK L+  G  V+A    G T LH
Sbjct: 67  DS------------------DGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLH 108
Query: 192 IAA 194
            AA
Sbjct: 109 HAA 111

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 44/128 (34%), Positives = 59/128 (46%), Gaps = 19/128 (14%)
Query: 66  SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG 125
           SD     L AARAG  D++R L+  G D+N  +       +L  A  GHL+ +  LL+ G
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAH-GHLEIVEVLLKNG 70
Query: 126 VDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKK 185
            D+N  +A                   G   LHLAA  GH  + + LLK G  V+A  K 
Sbjct: 71  ADVNAVDAI------------------GFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKF 112
Query: 186 GNTALHIA 193
           G TA  I+
Sbjct: 113 GKTAFDIS 120

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 44/128 (34%), Positives = 62/128 (48%), Gaps = 19/128 (14%)
Query: 66  SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG 125
           SD     L A RAG  D++R L+  G D+N  + +   T    AA+ GHL+ +  LL+ G
Sbjct: 12  SDLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGV-TPLHLAAKRGHLEIVEVLLKHG 70
Query: 126 VDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKK 185
            D+N S++                   G   LHLAA  GH  +V+ LL+ G  V+A  K 
Sbjct: 71  ADVNASDSW------------------GRTPLHLAATVGHLEIVEVLLEYGADVNAQDKF 112
Query: 186 GNTALHIA 193
           G TA  I+
Sbjct: 113 GKTAFDIS 120

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 60.1 bits (144), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 42/123 (34%), Positives = 59/123 (47%), Gaps = 19/123 (15%)
Query: 72  FLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTS 131
            + AA  G+ D++++LLE G D N S+ SD  T    AA  GH + ++ LL  G D N  
Sbjct: 8   LIEAAENGNKDRVKDLLENGADPNASD-SDGRTPLHYAAENGHKEIVKLLLSKGADPNAK 66
Query: 132 NATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALH 191
           ++                  +G   LH AA++GH  +VK LL  G   +A    G T LH
Sbjct: 67  DS------------------DGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLH 108
Query: 192 IAA 194
            AA
Sbjct: 109 YAA 111

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/128 (34%), Positives = 61/128 (47%), Gaps = 19/128 (14%)
Query: 66  SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG 125
           SD     L A RAG  D++R L+  G D+N  + +   T    AA+ GHL+ +  LL+ G
Sbjct: 12  SDLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGV-TPLHLAAKRGHLEIVEVLLKHG 70
Query: 126 VDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKK 185
            D+N S+                    G   LHLAA  GH  +V+ LL+ G  V+A  K 
Sbjct: 71  ADVNASDIW------------------GRTPLHLAATVGHLEIVEVLLEYGADVNAQDKF 112
Query: 186 GNTALHIA 193
           G TA  I+
Sbjct: 113 GKTAFDIS 120

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/128 (35%), Positives = 60/128 (46%), Gaps = 19/128 (14%)
Query: 66  SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG 125
           SD     L AARAG  D++R L   G D+N +N    +T    AA  GHL+ +  LL+ G
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILTANGADVN-ANDYWGHTPLHLAAMLGHLEIVEVLLKNG 70
Query: 126 VDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKK 185
            D+N +                   N G   LHLAA   H  +V+ LLK G  V+A  K 
Sbjct: 71  ADVNATG------------------NTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKF 112
Query: 186 GNTALHIA 193
           G TA  I+
Sbjct: 113 GKTAFDIS 120

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 43/128 (33%), Positives = 60/128 (46%), Gaps = 19/128 (14%)
Query: 66  SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG 125
           SD     L A RAG  D++R L+  G D+N  + +   T    AA+ GHL+ +  LL+ G
Sbjct: 12  SDLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGV-TPLHLAAKRGHLEIVEVLLKHG 70
Query: 126 VDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKK 185
            D+N  +                    G   LHLAA  GH  +V+ LL+ G  V+A  K 
Sbjct: 71  ADVNARDIW------------------GRTPLHLAATVGHLEIVEVLLEYGADVNAQDKF 112
Query: 186 GNTALHIA 193
           G TA  I+
Sbjct: 113 GKTAFDIS 120

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/128 (34%), Positives = 58/128 (45%), Gaps = 19/128 (14%)
Query: 66  SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG 125
           SD     L AARAG  D++R L+  G D+N  +     T    AA   HL+ +  LL+ G
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNAEDKVGL-TPLHLAAMNDHLEIVEVLLKNG 70
Query: 126 VDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKK 185
            D+N  +A                   G   LHL A  GH  +V+ LLK G  V+A  K 
Sbjct: 71  ADVNAIDAI------------------GETPLHLVAMYGHLEIVEVLLKHGADVNAQDKF 112
Query: 186 GNTALHIA 193
           G TA  I+
Sbjct: 113 GKTAFDIS 120

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 51/95 (53%), Gaps = 18/95 (18%)
Query: 99  ASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALH 158
           + D NT    AA+ GH +++++LL  G D+N   A SK               +G   LH
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLSKGADVN---ARSK---------------DGNTPLH 47
Query: 159 LAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIA 193
           LAAK+GH  +VK LL  G  V+A +K GNT  H+A
Sbjct: 48  LAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLA 82

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 62/133 (46%), Gaps = 19/133 (14%)
Query: 70  TSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDIN 129
           T    A+  GHL  ++ LL+ G   N SN     T    AARAGH +  + LL+     N
Sbjct: 16  TPLHVASFMGHLPIVKNLLQRGASPNVSNVKV-ETPLHMAARAGHTEVAKYLLQ-----N 69
Query: 130 TSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTA 189
            +   +K  D+Q               LH AA+ GHT +VK LL+     + +T  G+T 
Sbjct: 70  KAKVNAKAKDDQ-------------TPLHCAARIGHTNMVKLLLENNANPNLATTAGHTP 116
Query: 190 LHIAALDSLVTDI 202
           LHIAA +  V  +
Sbjct: 117 LHIAAREGHVETV 129

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 45/93 (48%), Gaps = 18/93 (19%)
Query: 101 DPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLA 160
           D     L AARAG  D++R L+  G D+N  +                   +G   LHLA
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGADVNAKD------------------KDGYTPLHLA 42
Query: 161 AKDGHTTVVKALLKGGCKVDASTKKGNTALHIA 193
           A++GH  +V+ LLK G  V+A  K G TA  I+
Sbjct: 43  AREGHLEIVEVLLKAGADVNAQDKFGKTAFDIS 75

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 71/147 (48%), Gaps = 17/147 (11%)
Query: 64  CYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLE 123
           C  D  T  + AA   HL+ ++ L++AG  ++  +A + +T    AA+ GH + ++ LL 
Sbjct: 40  CSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDA-EGSTCLHLAAKKGHYEVVQYLLS 98
Query: 124 AG-VDINTSN---------ATSKKLDNQLNI-----HQKNIKNNGLN-ALHLAAKDGHTT 167
            G +D+N  +         AT  K  + + +        NI++N  N  LH AA  G   
Sbjct: 99  NGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVD 158
Query: 168 VVKALLKGGCKVDASTKKGNTALHIAA 194
           + + LL   C + A    G++ LHIAA
Sbjct: 159 IAEILLAAKCDLHAVNIHGDSPLHIAA 185

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 53.9 bits (128), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 56/119 (47%), Gaps = 18/119 (15%)
Query: 76  ARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATS 135
           A +G LD+L+E + A   + T    D  T+   A  AGH + +  LL+ GV +N  +   
Sbjct: 14  AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKD--- 70
Query: 136 KKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
                          + G + LH+AA  G   +VKALL  G  V+A  + G T LH AA
Sbjct: 71  ---------------DAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAA 114

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 53.5 bits (127), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 56/119 (47%), Gaps = 18/119 (15%)
Query: 76  ARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATS 135
           A +G LD+L+E + A   + T    D  T+   A  AGH + +  LL+ GV +N  +   
Sbjct: 14  AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKD--- 70
Query: 136 KKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
                          + G + LH+AA  G   +VKALL  G  V+A  + G T LH AA
Sbjct: 71  ---------------DAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAA 114

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 57/119 (47%), Gaps = 18/119 (15%)
Query: 76  ARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATS 135
           A +G L++L+E + A   + T    D  T+   A  AGH + +  LL+ GV +N  +   
Sbjct: 14  AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKD--- 70
Query: 136 KKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
                          + G + LH+AA  G   +VKALL  G +V+A  + G T LH AA
Sbjct: 71  ---------------DAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAA 114

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 57/119 (47%), Gaps = 18/119 (15%)
Query: 76  ARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATS 135
           A +G L++L+E + A   + T    D  T+   A  AGH + +  LL+ GV +N  +   
Sbjct: 15  AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKD--- 71
Query: 136 KKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
                          + G + LH+AA  G   +VKALL  G +V+A  + G T LH AA
Sbjct: 72  ---------------DAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAA 115

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 45/95 (47%), Gaps = 18/95 (18%)
Query: 99  ASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALH 158
            SD     L AARAG  D++R L+  G D+   +                   NG   LH
Sbjct: 3   GSDLGKKLLEAARAGQDDEVRILMANGADVAAKD------------------KNGSTPLH 44
Query: 159 LAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIA 193
           LAA++GH  VVK LL+ G  V+A  K G TA  I+
Sbjct: 45  LAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDIS 79

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 44/95 (46%), Gaps = 18/95 (18%)
Query: 99  ASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALH 158
            SD     L AARAG  D++R L+  G D+   +                   NG   LH
Sbjct: 21  GSDLGKKLLEAARAGQDDEVRILMANGADVAAKD------------------KNGSTPLH 62
Query: 159 LAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIA 193
           LAA++GH  VVK LL+ G  V A  K G TA  I+
Sbjct: 63  LAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDIS 97

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/128 (35%), Positives = 55/128 (42%), Gaps = 22/128 (17%)
Query: 67  DPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLR-AARAGHLDKLRELLEAG 125
           D     L AARAG  D++R L+  G    T       TS L  AA+ GH      LL AG
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFTTDWLG---TSPLHLAAQYGHFSTTEVLLRAG 57
Query: 126 VDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKK 185
           V    S     K+D                 LH+AA +GH  +V+ LLK G  V+A    
Sbjct: 58  V----SRDARTKVDR--------------TPLHMAASEGHANIVEVLLKHGADVNAKDML 99
Query: 186 GNTALHIA 193
             TALH A
Sbjct: 100 KMTALHWA 107

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 57/126 (45%), Gaps = 19/126 (15%)
Query: 67  DPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGV 126
           D    FL A  +G  +++  LLE G DIN +N  D  T+  +A    ++D ++ L+E G 
Sbjct: 39  DDGAVFLAACSSGDTEEVLRLLERGADINYANV-DGLTALHQACIDDNVDMVKFLVENGA 97
Query: 127 DINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKG 186
           +IN  +                  N G   LH AA  G+  + + L+  G  V A   +G
Sbjct: 98  NINQPD------------------NEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEG 139
Query: 187 NTALHI 192
           +T L I
Sbjct: 140 DTPLDI 145

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 61/156 (39%), Gaps = 51/156 (32%)
Query: 72  FLRAARAGHLDKLRELLEAGVDINTSN--------------------------------A 99
            ++A + G  ++ REL+EAG D+   +                                 
Sbjct: 13  IVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLG 72
Query: 100 SDPNTSFLRAA-RAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALH 158
            D N++ L  A R GHL  + +L++ G D +                   I   G + +H
Sbjct: 73  GDLNSTPLHWATRQGHLSMVVQLMKYGADPSL------------------IDGEGCSCIH 114
Query: 159 LAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
           LAA+ GHT++V  L+  G  VD   + G T L  AA
Sbjct: 115 LAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAA 150

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 55/109 (50%), Gaps = 22/109 (20%)
Query: 109 AARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTV 168
           AARAG LD L+ LLE   D+N         DN+ N+            LHLAAK+GH  V
Sbjct: 77  AARAGQLDTLQTLLEFQADVNIE-------DNEGNL-----------PLHLAAKEGHLRV 118
Query: 169 VKALLK-GGCKVDASTKKGNTALHIAAL---DSLVTDIASSAITDATSL 213
           V+ L+K     V     KG+TA  +A L   + +V+ + ++    AT+L
Sbjct: 119 VEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAGGATNL 167

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 43.5 bits (101), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 55/109 (50%), Gaps = 22/109 (20%)
Query: 109 AARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTV 168
           AARAG LD L+ LLE   D+N         DN+ N+            LHLAAK+GH  V
Sbjct: 77  AARAGFLDTLQTLLEFQADVNIE-------DNEGNL-----------PLHLAAKEGHLRV 118
Query: 169 VKALLK-GGCKVDASTKKGNTALHIAAL---DSLVTDIASSAITDATSL 213
           V+ L+K     V     KG+TA  +A L   + +V+ + ++    AT+L
Sbjct: 119 VEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAGGATNL 167

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 43.5 bits (101), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 55/109 (50%), Gaps = 22/109 (20%)
Query: 109 AARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTV 168
           AARAG LD L+ LLE   D+N         DN+ N+            LHLAAK+GH  V
Sbjct: 77  AARAGFLDTLQTLLEFQADVNIE-------DNEGNL-----------PLHLAAKEGHLRV 118
Query: 169 VKALLK-GGCKVDASTKKGNTALHIAAL---DSLVTDIASSAITDATSL 213
           V+ L+K     V     KG+TA  +A L   + +V+ + ++    AT+L
Sbjct: 119 VEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAGGATNL 167

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 43.5 bits (101), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 55/128 (42%), Gaps = 19/128 (14%)
Query: 75  AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNAT 134
           A + GH   ++ LL++    N  + S  NT  + A   GH + +  LL+ G  IN SN  
Sbjct: 126 ACQQGHFQVVKCLLDSNAKPNKKDLSG-NTPLIYACSGGHHELVALLLQHGASINASN-- 182
Query: 135 SKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
                           N G  ALH A  + H  VV+ LL  G  V    K+  TA+  A 
Sbjct: 183 ----------------NKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAE 226
Query: 195 LDSLVTDI 202
            +S + ++
Sbjct: 227 QNSKIMEL 234

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 55/109 (50%), Gaps = 22/109 (20%)
Query: 109 AARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTV 168
           AARAG LD L+ LLE   D+N         DN+ N+            LHLAAK+GH  V
Sbjct: 77  AARAGFLDTLQTLLENQADVNIE-------DNEGNL-----------PLHLAAKEGHLRV 118
Query: 169 VKALLK-GGCKVDASTKKGNTALHIAAL---DSLVTDIASSAITDATSL 213
           V+ L+K     V     KG+TA  +A L   + +V+ + ++    AT+L
Sbjct: 119 VEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAGGATNL 167

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 44/88 (50%), Gaps = 19/88 (21%)
Query: 109 AARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTV 168
           AARAG LD L+ LLE   D+N         DN+ N+            LHLAAK+GH  V
Sbjct: 77  AARAGFLDTLQTLLEFQADVNIE-------DNEGNL-----------PLHLAAKEGHLRV 118
Query: 169 VKALLK-GGCKVDASTKKGNTALHIAAL 195
           V+ L+K     V     KG+TA  +A L
Sbjct: 119 VEFLVKHTASNVGHRNHKGDTACDLARL 146

>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The Chloroplast Signal Recognition Particle Protein Cpsrp43 Length = 183

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 58/133 (43%), Gaps = 23/133 (17%)
Query: 63  DCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPN--TSFLRAARAGHLDKLRE 120
           D  S+  T +  AAR      L +LLE        +A D N  T+ L  A  G    +R 
Sbjct: 39  DVVSEYETPWWTAARKADEQALSQLLED----RDVDAVDENGRTALLFVAGLGSDKCVRL 94
Query: 121 LLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVD 180
           L EAG D++  +                    GL ALH+AA      VV+AL++ G  ++
Sbjct: 95  LAEAGADLDHRDM-----------------RGGLTALHMAAGYVRPEVVEALVELGADIE 137
Query: 181 ASTKKGNTALHIA 193
              ++G TAL +A
Sbjct: 138 VEDERGLTALELA 150

>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43 Length = 244

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 58/133 (43%), Gaps = 23/133 (17%)
Query: 63  DCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPN--TSFLRAARAGHLDKLRE 120
           D  S+  T +  AAR      L +LLE        +A D N  T+ L  A  G    +R 
Sbjct: 40  DVVSEYETPWWTAARKADEQALSQLLED----RDVDAVDENGRTALLFVAGLGSDKCVRL 95
Query: 121 LLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVD 180
           L EAG D++  +                    GL ALH+AA      VV+AL++ G  ++
Sbjct: 96  LAEAGADLDHRDM-----------------RGGLTALHMAAGYVRPEVVEALVELGADIE 138
Query: 181 ASTKKGNTALHIA 193
              ++G TAL +A
Sbjct: 139 VEDERGLTALELA 151

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	225
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-25
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-16
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	4e-10
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-24
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-23
3v30_A	172	DNA-binding protein rfxank; structural genomics co	5e-19
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-23
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	8e-12
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-22
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	6e-16
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-07
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	5e-07
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	5e-22
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	4e-13
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-10
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-21
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-21
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-20
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-20
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-20
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-16
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-14
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-21
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	6e-13
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-11
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	9e-06
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-21
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-19
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	8e-10
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	5e-21
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	4e-16
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-15
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-09
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-20
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	9e-19
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-16
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	9e-14
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	5e-10
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-20
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-19
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-07
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-20
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-19
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-12
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	9e-10
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-20
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-19
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-19
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	8e-13
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	8e-12
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-10
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-04
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-20
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-19
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	7e-17
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-15
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-13
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-20
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-19
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-16
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-14
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	6e-11
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-07
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-04
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	5e-20
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-16
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	9e-20
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-19
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-16
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-15
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-19
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-07
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-19
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	8e-14
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	4e-13
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	4e-04
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-19
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-17
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-15
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-15
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-14
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-12
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-12
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-19
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-16
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-06
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	6e-06
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	5e-19
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-16
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	6e-15
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-14
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-07
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	7e-19
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	9e-15
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-14
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	6e-14
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-06
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	7e-04
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	9e-19
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	5e-09
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-18
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	7e-10
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-09
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-18
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-17
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-09
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-09
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-18
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-17
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-16
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	7e-13
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-08
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-18
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-14
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	6e-14
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-12
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-18
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	7e-18
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	6e-12
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-10
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-04
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-18
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-16
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	8e-15
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	4e-18
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-16
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	4e-18
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	7e-18
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	6e-13
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-09
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	5e-18
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	8e-18
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-17
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-14
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-10
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	5e-18
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-17
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-16
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-15
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	7e-13
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	6e-18
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	6e-15
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-17
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-15
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-14
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-17
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-14
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-10
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-17
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-14
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	7e-13
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-07
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-17
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-16
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	8e-15
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	5e-10
2rfa_A	232	Transient receptor potential cation channel subfa	4e-17
2rfa_A	232	Transient receptor potential cation channel subfa	2e-13
2rfa_A	232	Transient receptor potential cation channel subfa	2e-10
2rfa_A	232	Transient receptor potential cation channel subfa	3e-10
2rfa_A	232	Transient receptor potential cation channel subfa	1e-06
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	5e-17
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-08
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-06
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	6e-17
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-09
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-08
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	7e-16
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	4e-14
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	7e-12
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-15
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-15
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-14
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-13
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	7e-11
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-08
2etb_A	256	Transient receptor potential cation channel subfam	2e-15
2etb_A	256	Transient receptor potential cation channel subfam	2e-13
2etb_A	256	Transient receptor potential cation channel subfam	6e-11
2etb_A	256	Transient receptor potential cation channel subfam	9e-11
2etb_A	256	Transient receptor potential cation channel subfam	1e-05
2pnn_A	273	Transient receptor potential cation channel subfa	4e-13
2pnn_A	273	Transient receptor potential cation channel subfa	8e-13
2pnn_A	273	Transient receptor potential cation channel subfa	3e-12
2pnn_A	273	Transient receptor potential cation channel subfa	7e-09
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	8e-13
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-10
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	1e-11
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-10
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-10
3jxi_A	260	Vanilloid receptor-related osmotically activated p	7e-07
3jxi_A	260	Vanilloid receptor-related osmotically activated p	4e-05
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-09
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-04
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-09
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-09
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-08
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	8e-09
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	9e-05
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	1e-06
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	4e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 95.9 bits (240), Expect = 3e-25
 Identities = 31/126 (24%), Positives = 45/126 (35%), Gaps = 19/126 (15%)

Query: 69  NTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDI 128
           + S  + A  G +  L   +E    IN ++     T  + AA  G +  +  LL+ G D 
Sbjct: 4   SLSVHQLAAQGEMLYLATRIEQENVINHTDEEG-FTPLMWAAAHGQIAVVEFLLQNGADP 62

Query: 129 NTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNT 188
                                     +AL LA   G+T +VK LL  G  V+     G T
Sbjct: 63  QLLG------------------KGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGT 104

Query: 189 ALHIAA 194
            L  A 
Sbjct: 105 PLLYAV 110

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 73.6 bits (182), Expect = 1e-16
 Identities = 26/117 (22%), Positives = 50/117 (42%), Gaps = 19/117 (16%)

Query: 69  NTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDI 128
            ++   A   G+ D ++ LL+ GVD+N  +  +  T  L A    H+  ++ LLE+G D 
Sbjct: 70  ESALSLACSKGYTDIVKMLLDCGVDVNEYD-WNGGTPLLYAVHGNHVKCVKMLLESGADP 128

Query: 129 NTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKK 185
                                 ++G N++ LA   G+ +V + +     K+  + K+
Sbjct: 129 TIET------------------DSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIKE 167

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 55.9 bits (136), Expect = 4e-10
 Identities = 8/43 (18%), Positives = 18/43 (41%)

Query: 152 NGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
               ++H  A  G    +   ++    ++ + ++G T L  AA
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAA 44

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 94.0 bits (235), Expect = 2e-24
 Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 20/127 (15%)

Query: 69  NTSFLRAARAGHLDKLRELLEAGVD-INTSNASDPNTSFLRAARAGHLDKLRELLEAGVD 127
           + S  + A  G LD+L+E L  G + +N  +     T  + A+  G ++ +R LLE G D
Sbjct: 3   SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERG-FTPLIWASAFGEIETVRFLLEWGAD 61

Query: 128 INTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGN 187
            +                         +AL LA+  G+T +V  LL+    ++     G 
Sbjct: 62  PHILA------------------KERESALSLASTGGYTDIVGLLLERDVDINIYDWNGG 103

Query: 188 TALHIAA 194
           T L  A 
Sbjct: 104 TPLLYAV 110

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 92.1 bits (230), Expect = 1e-23
 Identities = 31/120 (25%), Positives = 48/120 (40%), Gaps = 19/120 (15%)

Query: 75  AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNAT 134
           A+  G ++ +R LLE G D +     +  ++   A+  G+ D +  LLE  VDIN  +  
Sbjct: 43  ASAFGEIETVRFLLEWGADPHILA-KERESALSLASTGGYTDIVGLLLERDVDINIYD-- 99

Query: 135 SKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
                            NG   L  A +  H   V+ALL  G  +      G T + +A 
Sbjct: 100 ----------------WNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAV 143

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 79.8 bits (198), Expect = 5e-19
 Identities = 27/120 (22%), Positives = 44/120 (36%), Gaps = 19/120 (15%)

Query: 69  NTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDI 128
            ++   A+  G+ D +  LLE  VDIN  +  +  T  L A R  H+  +  LL  G D+
Sbjct: 70  ESALSLASTGGYTDIVGLLLERDVDINIYD-WNGGTPLLYAVRGNHVKCVEALLARGADL 128

Query: 129 NTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNT 188
            T                    ++G   + LA   G+  V + +     K+  S      
Sbjct: 129 TTEA------------------DSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPAD 170

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 90.5 bits (226), Expect = 1e-23
 Identities = 32/129 (24%), Positives = 48/129 (37%), Gaps = 19/129 (14%)

Query: 66  SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG 125
           S  +  F+ A + G LD++++ +  G D+N +           AA  G L+ L  LL  G
Sbjct: 5   SMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTL-EGGRKPLHYAADCGQLEILEFLLLKG 63

Query: 126 VDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKK 185
            DIN  +                   + +  L  A  +GH + VK LL  G         
Sbjct: 64  ADINAPD------------------KHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPD 105

Query: 186 GNTALHIAA 194
           G TA     
Sbjct: 106 GLTAFEATD 114

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 59.3 bits (145), Expect = 8e-12
 Identities = 23/96 (23%), Positives = 32/96 (33%), Gaps = 19/96 (19%)

Query: 75  AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNAT 134
           AA  G L+ L  LL  G DIN  +     T  L A   GH+  ++ LL  G D       
Sbjct: 47  AADCGQLEILEFLLLKGADINAPD-KHHITPLLSAVYEGHVSCVKLLLSKGADKTVKG-- 103

Query: 135 SKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVK 170
                            +GL A           +++
Sbjct: 104 ----------------PDGLTAFEATDNQAIKALLQ 123

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 90.0 bits (224), Expect = 3e-22
 Identities = 30/126 (23%), Positives = 48/126 (38%), Gaps = 20/126 (15%)

Query: 69  NTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDI 128
             S     R        E +  G+ +  +    P    L ++  G  D ++ ++    D 
Sbjct: 6   QVSLPPGKRTNLRKTGSERIAHGMRVKFNP--LPLALLLDSSLEGEFDLVQRIIYEVDDP 63

Query: 129 NTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNT 188
           +  N                  + G+ ALH A   GHT +VK L++ G  V+A+   G T
Sbjct: 64  SLPN------------------DEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWT 105

Query: 189 ALHIAA 194
            LH AA
Sbjct: 106 PLHCAA 111

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 73.0 bits (180), Expect = 6e-16
 Identities = 23/143 (16%), Positives = 50/143 (34%), Gaps = 19/143 (13%)

Query: 70  TSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDIN 129
              L ++  G  D ++ ++    D +  N  +  T+   A  AGH + ++ L++ GV++N
Sbjct: 39  ALLLDSSLEGEFDLVQRIIYEVDDPSLPN-DEGITALHNAVCAGHTEIVKFLVQFGVNVN 97

Query: 130 TSN---------ATSKK--------LDNQLNIHQKNIK-NNGLNALHLAAKDGHTTVVKA 171
            ++         A S          +++   +                  ++G+T   + 
Sbjct: 98  AADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQF 157

Query: 172 LLKGGCKVDASTKKGNTALHIAA 194
           L     K+    K    AL    
Sbjct: 158 LYGVQEKMGIMNKGVIYALWDYE 180

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 49.5 bits (119), Expect = 1e-07
 Identities = 6/45 (13%), Positives = 12/45 (26%), Gaps = 1/45 (2%)

Query: 151 NNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAAL 195
             G  +L    +          +  G +V          L  ++L
Sbjct: 3   ITGQVSLPPGKRTNLRKTGSERIAHGMRVKF-NPLPLALLLDSSL 46

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 48.0 bits (115), Expect = 5e-07
 Identities = 17/125 (13%), Positives = 33/125 (26%), Gaps = 25/125 (20%)

Query: 75  AARAGHLDKLRELLEAGVDINTSNASDPNTSFL--RAARAGHLDKLRELLEAGVDINTSN 132
           AA   ++   + L+E+G  +     SD  T+         G+    + L      +   N
Sbjct: 110 AASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMN 169

Query: 133 ATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGN--TAL 190
                                + AL          +    +K G  +    ++       
Sbjct: 170 ------------------KGVIYALWDYEPQNDDEL---PMKEGDCMTIIHREDEDEIEW 208

Query: 191 HIAAL 195
             A L
Sbjct: 209 WWARL 213

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 86.2 bits (215), Expect = 5e-22
 Identities = 52/126 (41%), Positives = 68/126 (53%), Gaps = 19/126 (15%)

Query: 69  NTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDI 128
            T    AAR GHL+ ++ LLEAG D+N  +  +  T    AAR GHL+ ++ LLEAG D+
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEAGADVNAKD-KNGRTPLHLAARNGHLEVVKLLLEAGADV 61

Query: 129 NTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNT 188
           N  +                   NG   LHLAA++GH  VVK LL+ G  V+A  K G T
Sbjct: 62  NAKD------------------KNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRT 103

Query: 189 ALHIAA 194
            LH+AA
Sbjct: 104 PLHLAA 109

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 62.7 bits (154), Expect = 4e-13
 Identities = 42/102 (41%), Positives = 56/102 (54%), Gaps = 19/102 (18%)

Query: 75  AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNAT 134
           AAR GHL+ ++ LLEAG D+N  +  +  T    AAR GHL+ ++ LLEAG D+N  +  
Sbjct: 42  AARNGHLEVVKLLLEAGADVNAKD-KNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD-- 98

Query: 135 SKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGG 176
                            NG   LHLAA++GH  VVK LL+ G
Sbjct: 99  ----------------KNGRTPLHLAARNGHLEVVKLLLEAG 124

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 55.8 bits (136), Expect = 2e-10
 Identities = 24/43 (55%), Positives = 29/43 (67%)

Query: 152 NGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
           NG   LHLAA++GH  VVK LL+ G  V+A  K G T LH+AA
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA 43

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 91.0 bits (227), Expect = 1e-21
 Identities = 45/143 (31%), Positives = 60/143 (41%), Gaps = 20/143 (13%)

Query: 69  NTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDI 128
            T    A+  GHL  ++ LL+ G   N SN     T    AARAGH +  + LL+    +
Sbjct: 15  LTPLHVASFMGHLPIVKNLLQRGASPNVSN-VKVETPLHMAARAGHTEVAKYLLQNKAKV 73

Query: 129 NTSN---------ATSKK--------LDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKA 171
           N            A            L+N  N +       G   LH+AA++GH   V A
Sbjct: 74  NAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLAT--TAGHTPLHIAAREGHVETVLA 131

Query: 172 LLKGGCKVDASTKKGNTALHIAA 194
           LL+        TKKG T LH+AA
Sbjct: 132 LLEKEASQACMTKKGFTPLHVAA 154

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 90.6 bits (226), Expect = 2e-21
 Identities = 41/143 (28%), Positives = 62/143 (43%), Gaps = 20/143 (13%)

Query: 69  NTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDI 128
            T    A    +LD ++ LL  G   ++    +  T    AA+   ++  R LL+ G   
Sbjct: 180 LTPLHVAVHHNNLDIVKLLLPRGGSPHSPA-WNGYTPLHIAAKQNQVEVARSLLQYGGSA 238

Query: 129 NTSN---------ATSKK--------LDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKA 171
           N  +         A  +         L  Q N +  N   +GL  LHL A++GH  V   
Sbjct: 239 NAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGN--KSGLTPLHLVAQEGHVPVADV 296

Query: 172 LLKGGCKVDASTKKGNTALHIAA 194
           L+K G  VDA+T+ G T LH+A+
Sbjct: 297 LIKHGVMVDATTRMGYTPLHVAS 319

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 87.9 bits (219), Expect = 1e-20
 Identities = 38/142 (26%), Positives = 53/142 (37%), Gaps = 20/142 (14%)

Query: 70  TSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDIN 129
           T    AAR GH++ +  LLE              T    AA+ G +     LLE     N
Sbjct: 115 TPLHIAAREGHVETVLALLEKEASQACMTKKG-FTPLHVAAKYGKVRVAELLLERDAHPN 173

Query: 130 TSN---------ATSKK--------LDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKAL 172
            +          A            L    + H      NG   LH+AAK     V ++L
Sbjct: 174 AAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPA--WNGYTPLHIAAKQNQVEVARSL 231

Query: 173 LKGGCKVDASTKKGNTALHIAA 194
           L+ G   +A + +G T LH+AA
Sbjct: 232 LQYGGSANAESVQGVTPLHLAA 253

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 87.2 bits (217), Expect = 3e-20
 Identities = 34/137 (24%), Positives = 55/137 (40%), Gaps = 20/137 (14%)

Query: 75  AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSN-- 132
           AA+   ++  R LL+ G   N  +     T    AA+ GH + +  LL    + N  N  
Sbjct: 219 AAKQNQVEVARSLLQYGGSANAESVQG-VTPLHLAAQEGHAEMVALLLSKQANGNLGNKS 277

Query: 133 -------ATSKK--------LDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGC 177
                     +         + + + +        G   LH+A+  G+  +VK LL+   
Sbjct: 278 GLTPLHLVAQEGHVPVADVLIKHGVMVDATT--RMGYTPLHVASHYGNIKLVKFLLQHQA 335

Query: 178 KVDASTKKGNTALHIAA 194
            V+A TK G + LH AA
Sbjct: 336 DVNAKTKLGYSPLHQAA 352

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 86.4 bits (215), Expect = 6e-20
 Identities = 39/143 (27%), Positives = 60/143 (41%), Gaps = 20/143 (13%)

Query: 69  NTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDI 128
            T    AA+ GH + +  LL    + N  N S   T     A+ GH+     L++ GV +
Sbjct: 246 VTPLHLAAQEGHAEMVALLLSKQANGNLGNKSG-LTPLHLVAQEGHVPVADVLIKHGVMV 304

Query: 129 NTSN---------ATSKK--------LDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKA 171
           + +          A+           L +Q +++ K     G + LH AA+ GHT +V  
Sbjct: 305 DATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKT--KLGYSPLHQAAQQGHTDIVTL 362

Query: 172 LLKGGCKVDASTKKGNTALHIAA 194
           LLK G   +  +  G T L IA 
Sbjct: 363 LLKNGASPNEVSSDGTTPLAIAK 385

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 76.8 bits (190), Expect = 1e-16
 Identities = 33/104 (31%), Positives = 42/104 (40%), Gaps = 19/104 (18%)

Query: 91  GVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIK 150
           G+       S   T    A+  GHL  ++ LL+ G   N SN                  
Sbjct: 4   GISGGGGGESG-LTPLHVASFMGHLPIVKNLLQRGASPNVSN------------------ 44

Query: 151 NNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
                 LH+AA+ GHT V K LL+   KV+A  K   T LH AA
Sbjct: 45  VKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAA 88

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 69.4 bits (171), Expect = 5e-14
 Identities = 25/141 (17%), Positives = 51/141 (36%), Gaps = 23/141 (16%)

Query: 75  AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSN-- 132
            A+ GH+     L++ GV ++ +      T    A+  G++  ++ LL+   D+N     
Sbjct: 285 VAQEGHVPVADVLIKHGVMVDATT-RMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKL 343

Query: 133 -------ATSKK--------LDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKAL---LK 174
                  A  +         L N  + ++ +  ++G   L +A + G+ +V   L     
Sbjct: 344 GYSPLHQAAQQGHTDIVTLLLKNGASPNEVS--SDGTTPLAIAKRLGYISVTDVLKVVTD 401

Query: 175 GGCKVDASTKKGNTALHIAAL 195
               V  S K   +       
Sbjct: 402 ETSFVLVSDKHRMSFPETVDE 422

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 84.8 bits (211), Expect = 2e-21
 Identities = 26/125 (20%), Positives = 42/125 (33%), Gaps = 19/125 (15%)

Query: 70  TSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDIN 129
                AA  G ++ +R+LLEAG D N  N              G       LL  G + N
Sbjct: 14  AGLATAAARGQVETVRQLLEAGADPNALNRFG-RRPIQVMMM-GSAQVAELLLLHGAEPN 71

Query: 130 TSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTA 189
            ++                        +H AA++G    +  L + G ++D     G   
Sbjct: 72  CAD-----------------PATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLP 114

Query: 190 LHIAA 194
           + +A 
Sbjct: 115 VDLAE 119

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 62.8 bits (154), Expect = 6e-13
 Identities = 22/105 (20%), Positives = 35/105 (33%), Gaps = 20/105 (19%)

Query: 73  LRAARAGHLDKLRELLEAGVDINTSNASDPNTSFL-RAARAGHLDKLRELLEAGVDINTS 131
           ++    G       LL  G + N ++     T  +  AAR G LD L  L  AG  ++  
Sbjct: 49  IQVMMMGSAQVAELLLLHGAEPNCAD-PATLTRPVHDAAREGFLDTLVVLHRAGARLDVC 107

Query: 132 NATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGG 176
           +                    G   + LA + GH  + + L    
Sbjct: 108 D------------------AWGRLPVDLAEEQGHRDIARYLHAAT 134

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 58.6 bits (143), Expect = 2e-11
 Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 2/52 (3%)

Query: 143 NIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
            IH      +    L  AA  G    V+ LL+ G   +A  + G   + +  
Sbjct: 4   GIHMLG--GSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMM 53

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 43.2 bits (103), Expect = 9e-06
 Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 75  AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVD 127
           AAR G LD L  L  AG  ++  + +        A   GH D  R L  A  D
Sbjct: 85  AAREGFLDTLVVLHRAGARLDVCD-AWGRLPVDLAEEQGHRDIARYLHAATGD 136

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 85.9 bits (214), Expect = 3e-21
 Identities = 45/129 (34%), Positives = 65/129 (50%), Gaps = 19/129 (14%)

Query: 66  SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG 125
           SD     L AARAG  D++R L+  G D+N  + +   T    AA  GHL+ +  LL+ G
Sbjct: 12  SDLGKKLLEAARAGRDDEVRILMANGADVNAED-ASGWTPLHLAAFNGHLEIVEVLLKNG 70

Query: 126 VDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKK 185
            D+N  +                  + G+  L LAA  GH  +V+ LLK G  V+A+  +
Sbjct: 71  ADVNAVD------------------HAGMTPLRLAALFGHLEIVEVLLKNGADVNANDME 112

Query: 186 GNTALHIAA 194
           G+T LH+AA
Sbjct: 113 GHTPLHLAA 121

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 80.5 bits (200), Expect = 3e-19
 Identities = 35/104 (33%), Positives = 48/104 (46%), Gaps = 18/104 (17%)

Query: 91  GVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIK 150
           G   +  + SD     L AARAG  D++R L+  G D+N  +                  
Sbjct: 3   GSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAED------------------ 44

Query: 151 NNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
            +G   LHLAA +GH  +V+ LLK G  V+A    G T L +AA
Sbjct: 45  ASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAA 88

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 55.1 bits (134), Expect = 8e-10
 Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 19/106 (17%)

Query: 69  NTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDI 128
            T    AA  GHL+ +  LL+ G D+N ++  + +T    AA  GHL+ +  LL+ G D+
Sbjct: 81  MTPLRLAALFGHLEIVEVLLKNGADVNAND-MEGHTPLHLAAMFGHLEIVEVLLKNGADV 139

Query: 129 NTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLK 174
           N  +                    G  A  ++  +G+  + + L K
Sbjct: 140 NAQD------------------KFGKTAFDISIDNGNEDLAEILQK 167

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 84.5 bits (210), Expect = 5e-21
 Identities = 25/128 (19%), Positives = 43/128 (33%), Gaps = 19/128 (14%)

Query: 67  DPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGV 126
                   AA  G ++++R LLEAG + N  N+             G       LL  G 
Sbjct: 11  PSADWLATAAARGRVEEVRALLEAGANPNAPNSYG-RRPIQVMMM-GSARVAELLLLHGA 68

Query: 127 DINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKG 186
           + N ++                        +H AA++G    +  L + G ++D     G
Sbjct: 69  EPNCAD-----------------PATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWG 111

Query: 187 NTALHIAA 194
              + +A 
Sbjct: 112 RLPVDLAE 119

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 71.7 bits (177), Expect = 4e-16
 Identities = 24/119 (20%), Positives = 36/119 (30%), Gaps = 18/119 (15%)

Query: 73  LRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSN 132
           ++    G       LL  G + N ++ +        AAR G LD L  L  AG  ++  +
Sbjct: 49  IQVMMMGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRD 108

Query: 133 ATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALH 191
                               G   + LA + GH  V + L         S      A  
Sbjct: 109 ------------------AWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAE 149

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 70.2 bits (173), Expect = 2e-15
 Identities = 23/108 (21%), Positives = 40/108 (37%), Gaps = 23/108 (21%)

Query: 88  LEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQK 147
           +E     +   ++D       AA  G ++++R LLEAG + N  N               
Sbjct: 1   MEPAAGSSMEPSADW---LATAAARGRVEEVRALLEAGANPNAPN--------------- 42

Query: 148 NIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNT-ALHIAA 194
              + G   + +    G   V + LL  G + + +     T  +H AA
Sbjct: 43  ---SYGRRPIQVMMM-GSARVAELLLLHGAEPNCADPATLTRPVHDAA 86

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 53.2 bits (129), Expect = 3e-09
 Identities = 22/95 (23%), Positives = 29/95 (30%), Gaps = 24/95 (25%)

Query: 75  AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNAT 134
           AAR G LD L  L  AG  ++  +A         A   GH D  R L  A          
Sbjct: 85  AAREGFLDTLVVLHRAGARLDVRDAWG-RLPVDLAEELGHRDVARYLRAAAGGTR----- 138

Query: 135 SKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVV 169
                             G N   + A +G + + 
Sbjct: 139 ------------------GSNHARIDAAEGPSDIP 155

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 86.8 bits (216), Expect = 1e-20
 Identities = 30/126 (23%), Positives = 44/126 (34%), Gaps = 18/126 (14%)

Query: 69  NTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDI 128
           N   ++A +   +D +++LLE G ++N        T    A +    D +  LL  G D 
Sbjct: 6   NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP 65

Query: 129 NTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNT 188
                                  NG     LAA  G   ++K  L  G  V+     G T
Sbjct: 66  VLRK------------------KNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFT 107

Query: 189 ALHIAA 194
           A   AA
Sbjct: 108 AFMEAA 113

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 81.4 bits (202), Expect = 9e-19
 Identities = 41/128 (32%), Positives = 59/128 (46%), Gaps = 10/128 (7%)

Query: 69  NTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDI 128
            T FL AA AG +  L+  L  G D+N  +     T+F+ AA  G +  L+ L + G ++
Sbjct: 73  ATPFLLAAIAGSVKLLKLFLSKGADVNECD-FYGFTAFMEAAVYGKVKALKFLYKRGANV 131

Query: 129 NTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALL-KGGCKVDASTKKGN 187
           N    T +  +          +  G  AL  AA+ GH  V+K LL + G  V+A    G 
Sbjct: 132 NLRRKTKEDQERL--------RKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGR 183

Query: 188 TALHIAAL 195
            AL  A L
Sbjct: 184 NALIHALL 191

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 74.8 bits (185), Expect = 2e-16
 Identities = 35/158 (22%), Positives = 65/158 (41%), Gaps = 34/158 (21%)

Query: 69  NTSFLRAARAGHLDKLRELLEAGVDINTSNASDPN---------TSFLRAARAGHLDKLR 119
            T+F+ AA  G +  L+ L + G ++N    +  +         T+ + AA  GH++ L+
Sbjct: 106 FTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLK 165

Query: 120 ELL-EAGVDINTSN----------ATSKKLDNQL-----------NIHQKNIKNNGLNAL 157
            LL E G D+N  +            S    +             +++ +     G   L
Sbjct: 166 ILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRG--ERGKTPL 223

Query: 158 HLAAKDGHTTVVKALL-KGGCKVDASTKKGNTALHIAA 194
            LA +  H  +V+ LL +   +++ +   G TAL +A 
Sbjct: 224 ILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAV 261

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 67.5 bits (166), Expect = 9e-14
 Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 17/96 (17%)

Query: 99  ASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALH 158
           A + N   ++A +   +D +++LLE G ++N                    +  G   LH
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQE-----------------EEGGWTPLH 44

Query: 159 LAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
            A +     +V+ LL+ G       K G T   +AA
Sbjct: 45  NAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAA 80

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 56.7 bits (138), Expect = 5e-10
 Identities = 24/118 (20%), Positives = 42/118 (35%), Gaps = 24/118 (20%)

Query: 69  NTSFLRAARAGHLDKLRE----LLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLE- 123
             + + A  +     +      LL+ G D+N        T  + A    HL  ++ LLE 
Sbjct: 183 RNALIHALLSSDDSDVEAITHLLLDHGADVNVRG-ERGKTPLILAVEKKHLGLVQRLLEQ 241

Query: 124 AGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDA 181
             ++IN ++                  ++G  AL LA +     + + L K G   D 
Sbjct: 242 EHIEINDTD------------------SDGKTALLLAVELKLKKIAELLCKRGASTDC 281

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 83.6 bits (208), Expect = 1e-20
 Identities = 28/127 (22%), Positives = 46/127 (36%), Gaps = 21/127 (16%)

Query: 69  NTSFLRAARAGHLDKLRELLEA-GVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVD 127
                 AA  G + ++R LL    V  +  N     T+ L+    G      ELL+ G  
Sbjct: 3   GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFG-KTA-LQVMMFGSTAIALELLKQGAS 60

Query: 128 INTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGN 187
            N  +                   +G + +H AA+ G    +K L++ G  V+     G 
Sbjct: 61  PNVQD------------------TSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGA 102

Query: 188 TALHIAA 194
             +H+A 
Sbjct: 103 LPIHLAV 109

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 79.8 bits (198), Expect = 4e-19
 Identities = 33/122 (27%), Positives = 48/122 (39%), Gaps = 20/122 (16%)

Query: 73  LRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSN 132
           L+    G      ELL+ G   N  + +   +    AAR G LD L+ L+E G D+N  +
Sbjct: 40  LQVMMFGSTAIALELLKQGASPNVQD-TSGTSPVHDAARTGFLDTLKVLVEHGADVNVPD 98

Query: 133 ATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHI 192
                               G   +HLA ++GHT VV  L      +     +G T L +
Sbjct: 99  ------------------GTGALPIHLAVQEGHTAVVSFLAAES-DLHRRDARGLTPLEL 139

Query: 193 AA 194
           A 
Sbjct: 140 AL 141

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 48.9 bits (118), Expect = 1e-07
 Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 1/47 (2%)

Query: 153 GLNALHLAAKDGHTTVVKALL-KGGCKVDASTKKGNTALHIAALDSL 198
             + L  AA  G    V+ LL +     DA  + G TAL +    S 
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGST 48

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 85.2 bits (212), Expect = 2e-20
 Identities = 27/126 (21%), Positives = 51/126 (40%), Gaps = 18/126 (14%)

Query: 69  NTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDI 128
               ++A + G  ++ REL+EAG D+   +  +  T    AA    +D ++  +  G  +
Sbjct: 10  TWDIVKATQYGIYERCRELVEAGYDVRQPD-KENVTLLHWAAINNRIDLVKYYISKGAIV 68

Query: 129 NTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNT 188
           +                     +     LH A + GH ++V  L+K G        +G +
Sbjct: 69  DQLG-----------------GDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCS 111

Query: 189 ALHIAA 194
            +H+AA
Sbjct: 112 CIHLAA 117

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 82.9 bits (206), Expect = 1e-19
 Identities = 37/138 (26%), Positives = 63/138 (45%), Gaps = 20/138 (14%)

Query: 75  AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSN-- 132
           A R GHL  + +L++ G D +  +  +  +    AA+ GH   +  L+  G D++  +  
Sbjct: 83  ATRQGHLSMVVQLMKYGADPSLID-GEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQN 141

Query: 133 -------ATSKK---------LDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGG 176
                  A  +          L   ++++  + K +   ALH A   G+TTV+  LL+ G
Sbjct: 142 GMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGD-KYHKNTALHWAVLAGNTTVISLLLEAG 200

Query: 177 CKVDASTKKGNTALHIAA 194
             VDA   KG +AL +A 
Sbjct: 201 ANVDAQNIKGESALDLAK 218

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 82.9 bits (206), Expect = 2e-19
 Identities = 33/134 (24%), Positives = 54/134 (40%), Gaps = 18/134 (13%)

Query: 70  TSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDIN 129
           T    AA    +D ++  +  G  ++       +T    A R GHL  + +L++ G D +
Sbjct: 44  TLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPS 103

Query: 130 TSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTA 189
             +                    G + +HLAA+ GHT++V  L+  G  VD   + G T 
Sbjct: 104 LID------------------GEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTP 145

Query: 190 LHIAALDSLVTDIA 203
           L  AA  +   D  
Sbjct: 146 LMWAAYRTHSVDPT 159

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 64.4 bits (158), Expect = 8e-13
 Identities = 22/102 (21%), Positives = 37/102 (36%), Gaps = 20/102 (19%)

Query: 94  INTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNG 153
           +   +        ++A + G  ++ REL+EAG D+   +                     
Sbjct: 2   MTHID-DYSTWDIVKATQYGIYERCRELVEAGYDVRQPD------------------KEN 42

Query: 154 LNALHLAAKDGHTTVVKALLKGGCKVDASTKK-GNTALHIAA 194
           +  LH AA +    +VK  +  G  VD       +T LH A 
Sbjct: 43  VTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWAT 84

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 61.7 bits (151), Expect = 8e-12
 Identities = 27/114 (23%), Positives = 43/114 (37%), Gaps = 19/114 (16%)

Query: 69  NTSFLRAARAGH-LDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVD 127
            T  + AA   H +D  R LL   V +N  +    NT+   A  AG+   +  LLEAG +
Sbjct: 143 MTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGAN 202

Query: 128 INTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDA 181
           ++  N                    G +AL LA +  +  ++  L +       
Sbjct: 203 VDAQN------------------IKGESALDLAKQRKNVWMINHLQEARQAKGY 238

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 58.2 bits (142), Expect = 2e-10
 Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 143 NIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
           ++   +  +     +  A + G     + L++ G  V    K+  T LH AA
Sbjct: 1   HMTHID--DYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAA 50

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 40.9 bits (97), Expect = 1e-04
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 69  NTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDI 128
           NT+   A  AG+   +  LLEAG +++  N     ++   A +  ++  +  L EA    
Sbjct: 178 NTALHWAVLAGNTTVISLLLEAGANVDAQNIKG-ESALDLAKQRKNVWMINHLQEARQAK 236

Query: 129 NTSN 132
              N
Sbjct: 237 GYDN 240

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 86.4 bits (215), Expect = 3e-20
 Identities = 37/127 (29%), Positives = 53/127 (41%), Gaps = 20/127 (15%)

Query: 69  NTSFLRAARAGHLDKLRELL-EAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVD 127
               L AAR+G+ +KL  LL    V+ + S+    +T    AA    +  ++ LL+ G D
Sbjct: 25  KDELLEAARSGNEEKLMALLTPLNVNCHASDGRK-STPLHLAAGYNRVRIVQLLLQHGAD 83

Query: 128 INTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGN 187
           ++  +                    GL  LH A   GH  V + LLK G  V+A      
Sbjct: 84  VHAKD------------------KGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQF 125

Query: 188 TALHIAA 194
           T LH AA
Sbjct: 126 TPLHEAA 132

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 83.3 bits (207), Expect = 4e-19
 Identities = 28/111 (25%), Positives = 40/111 (36%), Gaps = 20/111 (18%)

Query: 85  RELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELL-EAGVDINTSNATSKKLDNQLN 143
            +L +       +         L AAR+G+ +KL  LL    V+ + S+           
Sbjct: 8   LDLADPSAKAVLTGEYK-KDELLEAARSGNEEKLMALLTPLNVNCHASD----------- 55

Query: 144 IHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
                        LHLAA      +V+ LL+ G  V A  K G   LH A 
Sbjct: 56  -------GRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNAC 99

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 77.1 bits (191), Expect = 7e-17
 Identities = 35/129 (27%), Positives = 53/129 (41%), Gaps = 22/129 (17%)

Query: 69  NTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKL---RELLEAG 125
             S L+AAR   L K+++ L   +       S   T+   A  + H  +      LL  G
Sbjct: 179 GHSLLQAAREADLAKVKKTLALEIINFKQPQSH-ETALHCAVASLHPKRKQVAELLLRKG 237

Query: 126 VDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKK 185
            ++N  N                   + +  LH+AA+  H  V++ L K G K++A    
Sbjct: 238 ANVNEKN------------------KDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSL 279

Query: 186 GNTALHIAA 194
           G TALH AA
Sbjct: 280 GQTALHRAA 288

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 72.9 bits (180), Expect = 2e-15
 Identities = 30/132 (22%), Positives = 46/132 (34%), Gaps = 7/132 (5%)

Query: 69  NTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDI 128
            T    AA    ++    LL  G D    N     ++   A      ++L    +    +
Sbjct: 125 FTPLHEAASKNRVEVCSLLLSHGADPTLVN-CHGKSAVDMAPTPELRERLTYEFKGHSLL 183

Query: 129 NTS-NATSKKLDNQLNIHQKNI--KNNGLNALHLAAKDGHTT---VVKALLKGGCKVDAS 182
             +  A   K+   L +   N     +   ALH A    H     V + LL+ G  V+  
Sbjct: 184 QAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEK 243

Query: 183 TKKGNTALHIAA 194
            K   T LH+AA
Sbjct: 244 NKDFMTPLHVAA 255

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 67.5 bits (166), Expect = 1e-13
 Identities = 25/141 (17%), Positives = 37/141 (26%), Gaps = 40/141 (28%)

Query: 75  AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNAT 134
           A   GH +    LL+ G  +N  +     T    AA    ++    LL  G D    N  
Sbjct: 98  ACSYGHYEVTELLLKHGACVNAMD-LWQFTPLHEAASKNRVEVCSLLLSHGADPTLVN-- 154

Query: 135 SKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGC----------------- 177
                            +G +A+ +A        +    KG                   
Sbjct: 155 ----------------CHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTL 198

Query: 178 ----KVDASTKKGNTALHIAA 194
                     +   TALH A 
Sbjct: 199 ALEIINFKQPQSHETALHCAV 219

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 85.2 bits (212), Expect = 4e-20
 Identities = 31/120 (25%), Positives = 45/120 (37%), Gaps = 20/120 (16%)

Query: 75  AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNAT 134
               G    L   +            D    FL A  +G  +++  LLE G DIN +N  
Sbjct: 15  KRWIGSETDLEPPVVKRKKTKVKF--DDGAVFLAACSSGDTEEVLRLLERGADINYAN-- 70

Query: 135 SKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
                            +GL ALH A  D +  +VK L++ G  ++    +G   LH AA
Sbjct: 71  ----------------VDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAA 114

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 82.9 bits (206), Expect = 3e-19
 Identities = 38/128 (29%), Positives = 58/128 (45%), Gaps = 19/128 (14%)

Query: 67  DPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGV 126
           D    FL A  +G  +++  LLE G DIN +N  D  T+  +A    ++D ++ L+E G 
Sbjct: 39  DDGAVFLAACSSGDTEEVLRLLERGADINYAN-VDGLTALHQACIDDNVDMVKFLVENGA 97

Query: 127 DINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKG 186
           +IN  +                  N G   LH AA  G+  + + L+  G  V A   +G
Sbjct: 98  NINQPD------------------NEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEG 139

Query: 187 NTALHIAA 194
           +T L IA 
Sbjct: 140 DTPLDIAE 147

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 74.5 bits (184), Expect = 4e-16
 Identities = 28/130 (21%), Positives = 47/130 (36%), Gaps = 19/130 (14%)

Query: 67  DPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGV 126
           D   +     R    D  + L    ++          T+   AA  G+ + L+ L++A  
Sbjct: 165 DIEAARKEEERIMLRDARQWLNSGHINDVRHA-KSGGTALHVAAAKGYTEVLKLLIQARY 223

Query: 127 DINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKG 186
           D+N  +                   +G   LH AA  G     + L++  C ++A  K G
Sbjct: 224 DVNIKD------------------YDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVG 265

Query: 187 NTALHIAALD 196
            TA  +A  D
Sbjct: 266 QTAFDVADED 275

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 68.7 bits (169), Expect = 5e-14
 Identities = 29/132 (21%), Positives = 49/132 (37%), Gaps = 16/132 (12%)

Query: 75  AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSN-- 132
           A    ++D ++ L+E G +IN  + ++       AA  G+LD    L+  G  +   N  
Sbjct: 80  ACIDDNVDMVKFLVENGANINQPD-NEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSE 138

Query: 133 -------ATSKKLDNQLNIHQKNIKNNGLN---ALHLAAKDGHTTVVKALLKGGCKVDAS 182
                  A  +       + Q  +   G++   A     +       + L  G       
Sbjct: 139 GDTPLDIAEEE---AMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRH 195

Query: 183 TKKGNTALHIAA 194
            K G TALH+AA
Sbjct: 196 AKSGGTALHVAA 207

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 59.8 bits (146), Expect = 6e-11
 Identities = 17/88 (19%), Positives = 25/88 (28%), Gaps = 19/88 (21%)

Query: 109 AARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTV 168
               G    L   +                          +K +       A   G T  
Sbjct: 15  KRWIGSETDLEPPVVKRKKTK-------------------VKFDDGAVFLAACSSGDTEE 55

Query: 169 VKALLKGGCKVDASTKKGNTALHIAALD 196
           V  LL+ G  ++ +   G TALH A +D
Sbjct: 56  VLRLLERGADINYANVDGLTALHQACID 83

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 50.2 bits (121), Expect = 1e-07
 Identities = 24/113 (21%), Positives = 40/113 (35%), Gaps = 19/113 (16%)

Query: 75  AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNAT 134
           AA  G+ + L+ L++A  D+N  +  D  T    AA  G  +  R L+E   D+   N  
Sbjct: 206 AAAKGYTEVLKLLIQARYDVNIKD-YDGWTPLHAAAHWGKEEACRILVENLCDMEAVN-- 262

Query: 135 SKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGN 187
                             G  A  +A +D    + +   K         +K +
Sbjct: 263 ----------------KVGQTAFDVADEDILGYLEELQKKQNLLHSEKREKKS 299

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 40.9 bits (97), Expect = 1e-04
 Identities = 6/48 (12%), Positives = 12/48 (25%), Gaps = 1/48 (2%)

Query: 148 NIKNN-GLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
            + +        L    G  T ++  +    K       G   L   +
Sbjct: 2   KMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACS 49

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 81.3 bits (202), Expect = 5e-20
 Identities = 30/120 (25%), Positives = 45/120 (37%), Gaps = 19/120 (15%)

Query: 75  AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNAT 134
           A+  G +  +  LL+ G D N  + +   T    A   GHL  +  LL+    +NT+   
Sbjct: 17  ASIKGDIPSVEYLLQNGSDPNVKDHAG-WTPLHEACNHGHLKVVELLLQHKALVNTTG-- 73

Query: 135 SKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
                               + LH AAK+GH  +VK LL  G   +A    G   +    
Sbjct: 74  ----------------YQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTD 117

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 72.8 bits (180), Expect = 1e-16
 Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 20/104 (19%)

Query: 91  GVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIK 150
           G+D  T++     T    A+  G +  +  LL+ G D N  +                  
Sbjct: 1   GIDPFTNH--RGETLLHIASIKGDIPSVEYLLQNGSDPNVKD------------------ 40

Query: 151 NNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
           + G   LH A   GH  VV+ LL+    V+ +  + ++ LH AA
Sbjct: 41  HAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAA 84

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 84.1 bits (209), Expect = 9e-20
 Identities = 32/137 (23%), Positives = 54/137 (39%), Gaps = 21/137 (15%)

Query: 75  AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSN-- 132
           AA  GH   LR L+  G  +N    +D  +    A   GHL  ++ LL+ G  +N     
Sbjct: 66  AAIHGHQLSLRNLISQGWAVNIIT-ADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTAD 124

Query: 133 -------ATSKK--------LDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGC 177
                  A            L +  ++     +++  + +H AA+ GH   V +L+  G 
Sbjct: 125 WHTPLFNACVSGSWDCVNLLLQHGASV---QPESDLASPIHEAARRGHVECVNSLIAYGG 181

Query: 178 KVDASTKKGNTALHIAA 194
            +D       T L++A 
Sbjct: 182 NIDHKISHLGTPLYLAC 198

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 82.9 bits (206), Expect = 3e-19
 Identities = 24/123 (19%), Positives = 43/123 (34%), Gaps = 20/123 (16%)

Query: 75  AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNAT 134
           AAR GH++ +  L+  G +I+    S   T    A        +++LLE+G D+N     
Sbjct: 164 AARRGHVECVNSLIAYGGNIDHKI-SHLGTPLYLACENQQRACVKKLLESGADVNQ---- 218

Query: 135 SKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
                               + LH   +     +   L+  G    A   +G   + +  
Sbjct: 219 ---------------GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVP 263

Query: 195 LDS 197
            +S
Sbjct: 264 PES 266

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 75.6 bits (187), Expect = 1e-16
 Identities = 28/150 (18%), Positives = 43/150 (28%), Gaps = 48/150 (32%)

Query: 75  AARAGHLDKLRELLEAGVDINTSNASDPN------------------------------T 104
            +   H      L+  G  + + +                                   +
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWS 61

Query: 105 SFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDG 164
               AA  GH   LR L+  G  +N                      + ++ LH A   G
Sbjct: 62  PMHEAAIHGHQLSLRNLISQGWAVNIIT------------------ADHVSPLHEACLGG 103

Query: 165 HTTVVKALLKGGCKVDASTKKGNTALHIAA 194
           H + VK LLK G +V+  T   +T L  A 
Sbjct: 104 HLSCVKILLKHGAQVNGVTADWHTPLFNAC 133

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 71.8 bits (177), Expect = 4e-15
 Identities = 17/100 (17%), Positives = 34/100 (34%), Gaps = 13/100 (13%)

Query: 109 AARAGHLDKLRELLEAGVDINTSNATSKKLD-----------NQLNIHQKNIKN--NGLN 155
            +   H      L+  G  + + +     +D               +    + +  +  +
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWS 61

Query: 156 ALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAAL 195
            +H AA  GH   ++ L+  G  V+  T    + LH A L
Sbjct: 62  PMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACL 101

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 80.1 bits (199), Expect = 2e-19
 Identities = 39/128 (30%), Positives = 50/128 (39%), Gaps = 20/128 (15%)

Query: 67  DPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGV 126
           D     L AARAG  D++R L+  G    T       +    AA+ GH      LL AGV
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFTTDW--LGTSPLHLAAQYGHFSTTEVLLRAGV 58

Query: 127 DINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKG 186
             +                           LH+AA +GH  +V+ LLK G  V+A     
Sbjct: 59  SRDART------------------KVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLK 100

Query: 187 NTALHIAA 194
            TALH A 
Sbjct: 101 MTALHWAT 108

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 48.5 bits (117), Expect = 1e-07
 Identities = 19/98 (19%), Positives = 38/98 (38%), Gaps = 19/98 (19%)

Query: 75  AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNAT 134
           AA  GH + +  LL+ G D+N  +     T+   A    H + +  L++ G D++T +  
Sbjct: 74  AASEGHANIVEVLLKHGADVNAKD-MLKMTALHWATEHNHQEVVELLIKYGADVHTQS-- 130

Query: 135 SKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKAL 172
                                A  ++  +G+  + + L
Sbjct: 131 ----------------KFCKTAFDISIDNGNEDLAEIL 152

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 80.6 bits (200), Expect = 3e-19
 Identities = 30/142 (21%), Positives = 53/142 (37%), Gaps = 23/142 (16%)

Query: 70  TSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDIN 129
             +L   + GH            D+ +       T +  AAR      L +LLE   D++
Sbjct: 16  MEYLIEWKDGHSPSWVPSSYIAADVVSEY----ETPWWTAARKADEQALSQLLE-DRDVD 70

Query: 130 TSN---------ATSKK--------LDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKAL 172
             +                       +   ++  ++    GL ALH+AA      VV+AL
Sbjct: 71  AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRD-MRGGLTALHMAAGYVRPEVVEAL 129

Query: 173 LKGGCKVDASTKKGNTALHIAA 194
           ++ G  ++   ++G TAL +A 
Sbjct: 130 VELGADIEVEDERGLTALELAR 151

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 66.4 bits (163), Expect = 8e-14
 Identities = 20/106 (18%), Positives = 30/106 (28%), Gaps = 22/106 (20%)

Query: 89  EAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKN 148
           E    I +  A +    +L   + GH            D+ +   T              
Sbjct: 1   EVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYET-------------- 46

Query: 149 IKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
                      AA+      +  LL+    VDA  + G TAL   A
Sbjct: 47  -------PWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVA 84

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 64.1 bits (157), Expect = 4e-13
 Identities = 25/107 (23%), Positives = 39/107 (36%), Gaps = 18/107 (16%)

Query: 75  AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNAT 134
            A  G    +R L EAG D++  +     T+   AA     + +  L+E G DI   +  
Sbjct: 83  VAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVED-- 140

Query: 135 SKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDA 181
                             GL AL LA +   TT     ++ G ++  
Sbjct: 141 ----------------ERGLTALELAREILKTTPKGNPMQFGRRIGL 171

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 38.6 bits (91), Expect = 4e-04
 Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 1/60 (1%)

Query: 70  TSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDIN 129
           T+   AA     + +  L+E G DI   +     T+   A            ++ G  I 
Sbjct: 112 TALHMAAGYVRPEVVEALVELGADIEVED-ERGLTALELAREILKTTPKGNPMQFGRRIG 170

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 83.8 bits (208), Expect = 3e-19
 Identities = 21/126 (16%), Positives = 39/126 (30%), Gaps = 6/126 (4%)

Query: 69  NTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDI 128
           N+    A      D     +E G+D+N  + ++       + RA  +   +ELL+     
Sbjct: 212 NSHLHWAILINWEDVAMRFVEMGIDVNMED-NEHTVPLYLSVRAAMVLLTKELLQKTDVF 270

Query: 129 NTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNT 188
                      N   +         L+ +  AA      V++ L +   +V  S   G  
Sbjct: 271 LIQAC---PYHNGTTVLPDR--VVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAG 325

Query: 189 ALHIAA 194
                 
Sbjct: 326 GAVKRK 331

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 78.4 bits (194), Expect = 3e-17
 Identities = 27/133 (20%), Positives = 44/133 (33%), Gaps = 12/133 (9%)

Query: 69  NTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDI 128
            T+   A + G +D  + L   G   +             A  A   D +  L+E   + 
Sbjct: 54  CTALHLACKFGCVDTAKYLASVGEVHS---LWHGQKPIHLAVMANKTDLVVALVEGAKER 110

Query: 129 NTS---NATSK--KLDNQLNIHQKNIKNNGLNALHLAAKDG--HTTVVKALLKGGCKVDA 181
                        +  N++  H K+    G  ALH     G  +  ++K L++ G    A
Sbjct: 111 GQMPESLLNECDEREVNEIGSHVKH--CKGQTALHWCVGLGPEYLEMIKILVQLGASPTA 168

Query: 182 STKKGNTALHIAA 194
             K   T L  A 
Sbjct: 169 KDKADETPLMRAM 181

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 73.7 bits (182), Expect = 1e-15
 Identities = 20/128 (15%), Positives = 45/128 (35%), Gaps = 16/128 (12%)

Query: 69  NTSFLRAARAG--HLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGV 126
            T+       G  +L+ ++ L++ G      + +D  T  +RA    + + L  +++   
Sbjct: 139 QTALHWCVGLGPEYLEMIKILVQLGASPTAKDKAD-ETPLMRAMEFRNREALDLMMDTVP 197

Query: 127 DINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKG 186
                        + L +   N    G + LH A       V    ++ G  V+    + 
Sbjct: 198 S-----------KSSLRLDYAN--KQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEH 244

Query: 187 NTALHIAA 194
              L+++ 
Sbjct: 245 TVPLYLSV 252

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 73.7 bits (182), Expect = 1e-15
 Identities = 18/137 (13%), Positives = 32/137 (23%), Gaps = 30/137 (21%)

Query: 69  NTSFLRAARAGHLDKLRELLEAGVDINTSNASDPN------------TSFLRAARAGHLD 116
                 + RA  +   +ELL+             N                 AA     +
Sbjct: 245 TVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQE 304

Query: 117 KLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGG 176
            L+ L E   ++  S                   N G        K     V +  L   
Sbjct: 305 VLQLLQEKLDEVVRSL------------------NTGAGGAVKRKKKAAPAVKRMKLAPS 346

Query: 177 CKVDASTKKGNTALHIA 193
             V   ++    +  ++
Sbjct: 347 APVRTRSRSRARSSAVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 71.1 bits (175), Expect = 1e-14
 Identities = 27/120 (22%), Positives = 43/120 (35%), Gaps = 27/120 (22%)

Query: 75  AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNAT 134
           AAR G  D++R L+E GV     N     T+   A + G +D  + L   G   +     
Sbjct: 27  AARKGQTDEVRRLIETGVSPTIQN-RFGCTALHLACKFGCVDTAKYLASVGEVHSL---- 81

Query: 135 SKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
                            +G   +HLA     T +V AL++G        ++G     +  
Sbjct: 82  ----------------WHGQKPIHLAVMANKTDLVVALVEGA------KERGQMPESLLN 119

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 63.7 bits (156), Expect = 3e-12
 Identities = 22/144 (15%), Positives = 43/144 (29%), Gaps = 37/144 (25%)

Query: 69  NTSFLRAARAGHLDKLRELLE-----AGVDINTSNASDPNTSFLRAARAGHLDKLRELLE 123
            T  +RA    + + L  +++     + + ++ +N    N+    A      D     +E
Sbjct: 174 ETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQG-NSHLHWAILINWEDVAMRFVE 232

Query: 124 AGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALL---------- 173
            G+D+N  +                  N     L+L+ +     + K LL          
Sbjct: 233 MGIDVNMED------------------NEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQA 274

Query: 174 ---KGGCKVDASTKKGNTALHIAA 194
                G  V          +  AA
Sbjct: 275 CPYHNGTTVLPDRVVWLDFVPAAA 298

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 63.7 bits (156), Expect = 4e-12
 Identities = 26/105 (24%), Positives = 35/105 (33%), Gaps = 21/105 (20%)

Query: 90  AGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNI 149
             ++   S+  +       AAR G  D++R L+E GV     N                 
Sbjct: 9   PKLNRIKSD-DENMEKIHVAARKGQTDEVRRLIETGVSPTIQN----------------- 50

Query: 150 KNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
              G  ALHLA K G     K L   G         G   +H+A 
Sbjct: 51  -RFGCTALHLACKFGCVDTAKYLASVGEVHSL--WHGQKPIHLAV 92

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 81.1 bits (201), Expect = 4e-19
 Identities = 34/146 (23%), Positives = 55/146 (37%), Gaps = 20/146 (13%)

Query: 50  KIHNAVISLEPCYDCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRA 109
           K    +I      +     +     AA+ G+L  LRE L+  V +N  +    +T+   A
Sbjct: 55  KGRTGLIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLD-KAGSTALYWA 113

Query: 110 ARAGHLDKLRELL-EAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTV 168
              GH D +  L  +  +++N  N                    G  ALH AA  G+  +
Sbjct: 114 CHGGHKDIVEMLFTQPNIELNQQN------------------KLGDTALHAAAWKGYADI 155

Query: 169 VKALLKGGCKVDASTKKGNTALHIAA 194
           V+ LL  G + D    +   A  +A 
Sbjct: 156 VQLLLAKGARTDLRNIEKKLAFDMAT 181

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 74.2 bits (183), Expect = 2e-16
 Identities = 24/126 (19%), Positives = 39/126 (30%), Gaps = 24/126 (19%)

Query: 69  NTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDI 128
                RA          EL     DI        +T++ +    G               
Sbjct: 13  QVKVFRALYTFEPRTPDELYIEEGDIIYITD-MSDTNWWKGTSKGRTG------------ 59

Query: 129 NTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNT 188
                    L     + ++    +  N LH AAK G+ + ++  L     V+   K G+T
Sbjct: 60  ---------LIPSNYVAEQA--ESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGST 108

Query: 189 ALHIAA 194
           AL+ A 
Sbjct: 109 ALYWAC 114

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 15/91 (16%), Positives = 25/91 (27%), Gaps = 19/91 (20%)

Query: 75  AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNAT 134
           AA  G+ D ++ LL  G   +  N  +   +F  A  A     L++          SN  
Sbjct: 147 AAWKGYADIVQLLLAKGARTDLRN-IEKKLAFDMATNAACASLLKKKQGTDAVRTLSN-- 203

Query: 135 SKKLDNQLNIHQKNIKNNGLNALHLAAKDGH 165
                                    +  + H
Sbjct: 204 ----------------AEDYLDDEDSDLEHH 218

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 44.5 bits (106), Expect = 6e-06
 Identities = 5/44 (11%), Positives = 8/44 (18%)

Query: 151 NNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
             G   +  A           L      +   T   +T      
Sbjct: 10  KPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGT 53

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 81.3 bits (202), Expect = 5e-19
 Identities = 26/125 (20%), Positives = 48/125 (38%), Gaps = 18/125 (14%)

Query: 70  TSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDIN 129
           T+   A      + ++ LLE G DI+  +     +  + A     L  ++ LL+ G ++N
Sbjct: 118 TALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVN 177

Query: 130 TSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTA 189
                                 +G +ALH A+  G   +V+ L++ G          +T 
Sbjct: 178 AQM------------------YSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTP 219

Query: 190 LHIAA 194
           L +A 
Sbjct: 220 LMVAR 224

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 73.6 bits (182), Expect = 3e-16
 Identities = 30/124 (24%), Positives = 52/124 (41%), Gaps = 22/124 (17%)

Query: 75  AARAGHLDKLRELLEAG----VDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINT 130
           A        LR LL++     +D+   N  D  T+   A      + ++ LLE G DI+ 
Sbjct: 86  ACEHRSPTCLRALLDSAAPGTLDLEARN-YDGLTALHVAVNTECQETVQLLLERGADIDA 144

Query: 131 SNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTAL 190
            +                   +G + L  A ++   ++V+ LL+ G  V+A    G++AL
Sbjct: 145 VD-----------------IKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSAL 187

Query: 191 HIAA 194
           H A+
Sbjct: 188 HSAS 191

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 70.2 bits (173), Expect = 6e-15
 Identities = 29/126 (23%), Positives = 44/126 (34%), Gaps = 16/126 (12%)

Query: 70  TSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDIN 129
           T    A        +R L+ AG      +     T+   A        LR LL++     
Sbjct: 48  TPLHLAVITTLPSVVRLLVTAGASPMALD-RHGQTAAHLACEHRSPTCLRALLDSAAPGT 106

Query: 130 TSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDAS-TKKGNT 188
                        ++  +N   +GL ALH+A        V+ LL+ G  +DA   K G +
Sbjct: 107 L------------DLEARN--YDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRS 152

Query: 189 ALHIAA 194
            L  A 
Sbjct: 153 PLIHAV 158

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 69.4 bits (171), Expect = 1e-14
 Identities = 28/128 (21%), Positives = 45/128 (35%), Gaps = 27/128 (21%)

Query: 75  AARAGHLDKLRELLE----AGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINT 130
           A   G+L  +  L+      G +++  N +   T    A        +R L+ AG     
Sbjct: 16  AVVQGNLPAVHRLVNLFQQGGRELDIYN-NLRQTPLHLAVITTLPSVVRLLVTAGASPMA 74

Query: 131 SNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCK----VDASTKKG 186
            +                   +G  A HLA +    T ++ALL         ++A    G
Sbjct: 75  LD------------------RHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDG 116

Query: 187 NTALHIAA 194
            TALH+A 
Sbjct: 117 LTALHVAV 124

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 49.4 bits (119), Expect = 2e-07
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 151 NNGLNALHLAAKDGHTTVVKALL----KGGCKVDASTKKGNTALHIAA 194
            +G   LH+A   G+   V  L+    +GG ++D       T LH+A 
Sbjct: 7   EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAV 54

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 83.1 bits (205), Expect = 7e-19
 Identities = 30/133 (22%), Positives = 42/133 (31%), Gaps = 22/133 (16%)

Query: 67  DPNTSFLRAARAGH---LDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLE 123
                   AA  G    LD L  LL +   +    A +   +F  AA  GHL  L  L E
Sbjct: 91  KSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAEN-YQAFRLAAENGHLHVLNRLCE 149

Query: 124 AGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDAST 183
                                    I+    +A  LAA++GH  V+  L +       + 
Sbjct: 150 LAPTEI----------------MAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAM 193

Query: 184 --KKGNTALHIAA 194
              +   A   AA
Sbjct: 194 IQAENYYAFRWAA 206

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 71.1 bits (174), Expect = 9e-15
 Identities = 30/170 (17%), Positives = 46/170 (27%), Gaps = 38/170 (22%)

Query: 63  DCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPN-TSFLRAA-RAGHLDKLRE 120
              ++   +F  AA  GHL  L  L E      T+     N  +F  AA   GH + +  
Sbjct: 158 MIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINF 217

Query: 121 LLEAGVDINTSNATSKKLD----NQLNIHQKNIKNNGLNALHLAAKDGHTTVVKA----- 171
           LL+  V +  +     +      N       N      +A  L+  DG   +V       
Sbjct: 218 LLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQ 277

Query: 172 ---------------------------LLKGGCKVDASTKKGNTALHIAA 194
                                       +K            N  L +A 
Sbjct: 278 GFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLAL 327

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 71.1 bits (174), Expect = 1e-14
 Identities = 28/137 (20%), Positives = 38/137 (27%), Gaps = 18/137 (13%)

Query: 69  NTSFLRAARAGHLDKLRELLEAGVDINTSNAS-DPNTSFLRAARAGHLDKLRELLEAGVD 127
             +F  AA  GHL  L  L E       +    +   +F  AA  GHL  L  L E    
Sbjct: 129 YQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPT 188

Query: 128 INTSNATSKKLDNQLNIHQKNIKNNGLNALHLAA-KDGHTTVVKALLKGGCKVDASTKKG 186
             T                  I+     A   AA   GH  V+  LL     +  +    
Sbjct: 189 EAT----------------AMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHE 232

Query: 187 NTALHIAALDSLVTDIA 203
                      +   + 
Sbjct: 233 FEYGEKYVNPFIARHVN 249

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 68.8 bits (168), Expect = 6e-14
 Identities = 24/182 (13%), Positives = 49/182 (26%), Gaps = 21/182 (11%)

Query: 15  LEKKEKEEERKEEEEEEEKNISAIGPAVTKLRQEAKIHNAVISLEPCYDCYSDPNTSFLR 74
           +E  E + + +       +N+     +  +L      +   I +        +     L 
Sbjct: 9   IENYENDPQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLC 68

Query: 75  AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNAT 134
              A +    ++L          +             +  LD L  LL +   +      
Sbjct: 69  LYYAHYNRNAKQLWSDAHKKGIKS-EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQ-- 125

Query: 135 SKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTK--KGNTALHI 192
                                A  LAA++GH  V+  L +       +    +   A  +
Sbjct: 126 ----------------AENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRL 169

Query: 193 AA 194
           AA
Sbjct: 170 AA 171

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 46.9 bits (111), Expect = 2e-06
 Identities = 25/178 (14%), Positives = 48/178 (26%), Gaps = 44/178 (24%)

Query: 63  DCYSDPNTSFLRAA-RAGHLDKLRELLEAGVDINTSNA---------------------S 100
              ++   +F  AA   GH + +  LL+  V +  +                        
Sbjct: 193 MIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLK 252

Query: 101 DPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQL-----NIHQKNIK----- 150
           + + +F  +   G  D + +           N   +  +  L      +    IK     
Sbjct: 253 EMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPT 312

Query: 151 ----NNGLNALHLAAKDGHTTVVKALLKGGCKVDASTK--------KGNTALHIAALD 196
                +    L LA + G+      LL     +  +           G   L   AL+
Sbjct: 313 ATIPGDANELLRLALRLGNQGACALLLSIPSVLALTKANNYYINETGGRLDLRAVALE 370

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 39.2 bits (91), Expect = 7e-04
 Identities = 19/132 (14%), Positives = 35/132 (26%), Gaps = 28/132 (21%)

Query: 50  KIHNAVISLEPCYDCYSDPNTSFLRAARAGHLDKLREL-----LEAGVDINTSNASDPNT 104
                +++   C   +     + +R      LD +R L     ++A     T    D N 
Sbjct: 264 DGVFDLVTKSECLQGFY-MLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIP-GDANE 321

Query: 105 SFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDG 164
               A R G+      LL     +  + A                     N  ++    G
Sbjct: 322 LLRLALRLGNQGACALLLSIPSVLALTKA---------------------NNYYINETGG 360

Query: 165 HTTVVKALLKGG 176
              +    L+  
Sbjct: 361 RLDLRAVALEHH 372

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 77.6 bits (192), Expect = 9e-19
 Identities = 38/120 (31%), Positives = 50/120 (41%), Gaps = 22/120 (18%)

Query: 75  AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNAT 134
            +   H      L+  G  +     SD     L AARAG  D++R L+  G D+   +  
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMG----SDLGKKLLEAARAGQDDEVRILMANGADVAAKD-- 54

Query: 135 SKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
                            NG   LHLAA++GH  VVK LL+ G  V A  K G TA  I+ 
Sbjct: 55  ----------------KNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISI 98

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 51.4 bits (124), Expect = 5e-09
 Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 19/107 (17%)

Query: 66  SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG 125
           SD     L AARAG  D++R L+  G D+   +  + +T    AAR GHL+ ++ LLEAG
Sbjct: 22  SDLGKKLLEAARAGQDDEVRILMANGADVAAKD-KNGSTPLHLAARNGHLEVVKLLLEAG 80

Query: 126 VDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKAL 172
            D+   +                    G  A  ++  +G+  + + L
Sbjct: 81  ADVXAQD------------------KFGKTAFDISIDNGNEDLAEIL 109

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 78.2 bits (194), Expect = 1e-18
 Identities = 31/126 (24%), Positives = 52/126 (41%), Gaps = 20/126 (15%)

Query: 69  NTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDI 128
                 AA  G L++L  LL+  V++N  N     T+ L+  + G+ +  R LL  G + 
Sbjct: 6   GNELASAAARGDLEQLTSLLQNNVNVNAQN-GFGRTA-LQVMKLGNPEIARRLLLRGANP 63

Query: 129 NTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNT 188
           +  +                    G   +H AA+ G    ++ LL+    V+    +GN 
Sbjct: 64  DLKD------------------RTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNL 105

Query: 189 ALHIAA 194
            LH+AA
Sbjct: 106 PLHLAA 111

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 55.1 bits (134), Expect = 7e-10
 Identities = 14/50 (28%), Positives = 21/50 (42%)

Query: 149 IKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSL 198
           +     N L  AA  G    + +LL+    V+A    G TAL +  L + 
Sbjct: 1   MAEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNP 50

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 53.9 bits (131), Expect = 1e-09
 Identities = 31/122 (25%), Positives = 45/122 (36%), Gaps = 21/122 (17%)

Query: 73  LRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSN 132
           L+  + G+ +  R LL  G + +  +          AARAG LD L+ LLE   D+N  +
Sbjct: 42  LQVMKLGNPEIARRLLLRGANPDLKD-RTGFAVIHDAARAGFLDTLQTLLEFQADVNIED 100

Query: 133 ----------ATSKKLD--------NQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLK 174
                     A    L            N+  +N  + G  A  LA   G   VV  +  
Sbjct: 101 NEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRN--HKGDTACDLARLYGRNEVVSLMQA 158

Query: 175 GG 176
            G
Sbjct: 159 NG 160

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 79.0 bits (196), Expect = 2e-18
 Identities = 20/127 (15%), Positives = 40/127 (31%), Gaps = 20/127 (15%)

Query: 69  NTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDI 128
                 A +         L +    ++  + ++ NT    A     ++  + L++ G DI
Sbjct: 7   GALLEAANQRDTKKVKEILQDTTYQVDEVD-TEGNTPLNIAVHNNDIEIAKALIDRGADI 65

Query: 129 NTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALL-KGGCKVDASTKKGN 187
           N  N                  +   +    A   G T ++  +L      ++   + G 
Sbjct: 66  NLQN------------------SISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGG 107

Query: 188 TALHIAA 194
            AL  AA
Sbjct: 108 NALIPAA 114

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 76.7 bits (190), Expect = 2e-17
 Identities = 37/129 (28%), Positives = 51/129 (39%), Gaps = 21/129 (16%)

Query: 69  NTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG-VD 127
           NT    A     ++  + L++ G DIN  N S  ++ +L A   G  + L  +L+    D
Sbjct: 40  NTPLNIAVHNNDIEIAKALIDRGADINLQN-SISDSPYLYAGAQGRTEILAYMLKHATPD 98

Query: 128 INTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALL-KGGCKVDASTKKG 186
           +N  N                    G NAL  AA+ GH   VK LL  G   +D     G
Sbjct: 99  LNKHN------------------RYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFG 140

Query: 187 NTALHIAAL 195
            TAL  A  
Sbjct: 141 YTALIEAVG 149

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 55.1 bits (134), Expect = 1e-09
 Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 1/47 (2%)

Query: 149 IKNN-GLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
           +K       L  A +     V + L     +VD    +GNT L+IA 
Sbjct: 1   MKTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAV 47

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 53.6 bits (130), Expect = 4e-09
 Identities = 32/128 (25%), Positives = 55/128 (42%), Gaps = 23/128 (17%)

Query: 69  NTSFLRAARAGHLDKLRELLEAG-VDINTSNASDPNTSFLRAARAGHLDKLRELLEAG-V 126
           ++ +L A   G  + L  +L+    D+N  N      + + AA  GH+D ++ LLE G  
Sbjct: 73  DSPYLYAGAQGRTEILAYMLKHATPDLNKHN-RYGGNALIPAAEKGHIDNVKLLLEDGRE 131

Query: 127 DINTSNATSK-------KLDNQLNIHQ------------KNIKNN-GLNALHLAAKDGHT 166
           DI+  N            L     ++Q            ++IK+N G  A+  A + G+T
Sbjct: 132 DIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYT 191

Query: 167 TVVKALLK 174
            + K L +
Sbjct: 192 EISKILAQ 199

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 80.7 bits (200), Expect = 2e-18
 Identities = 21/120 (17%), Positives = 32/120 (26%), Gaps = 18/120 (15%)

Query: 75  AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNAT 134
           A      + +R L +AG D+N    +   T    A  A     L  LL+AG D       
Sbjct: 165 AVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARM-- 222

Query: 135 SKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
                             G   L  A    +  + + L   G           +    + 
Sbjct: 223 ----------------YGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSG 266

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 77.2 bits (191), Expect = 3e-17
 Identities = 26/130 (20%), Positives = 43/130 (33%), Gaps = 19/130 (14%)

Query: 67  DPNTSFLRAARAGHLDKLRELL-EAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG 125
             +      ++    ++      +  + +   N  D +T    A      + +R L +AG
Sbjct: 123 TSHAPAAVDSQPNPENEEEPRDEDWRLQLEAEN-YDGHTPLHVAVIHKDAEMVRLLRDAG 181

Query: 126 VDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKK 185
            D+N                       G   LHLA +    +V++ LLK G    A    
Sbjct: 182 ADLNKPE-----------------PTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYG 224

Query: 186 GNTALHIAAL 195
           G T L  A L
Sbjct: 225 GRTPLGSALL 234

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 74.1 bits (183), Expect = 5e-16
 Identities = 18/120 (15%), Positives = 35/120 (29%), Gaps = 5/120 (4%)

Query: 75  AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNAT 134
           AA  G    + +L  AG  +  +     +T+   A R         LL+         + 
Sbjct: 52  AAILGEASTVEKLYAAGAGVLVAE-RGGHTALHLACRVRAHTCACVLLQPRPSHPRDASD 110

Query: 135 SKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
           +                +   A   +  +              +++A    G+T LH+A 
Sbjct: 111 T----YLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAV 166

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 65.3 bits (160), Expect = 7e-13
 Identities = 21/122 (17%), Positives = 30/122 (24%), Gaps = 20/122 (16%)

Query: 75  AARAGHLDKLRELLEAGVDINTSNASDPN--TSFLRAARAGHLDKLRELLEAGVDINTSN 132
           A    H   L  LL         +  +    T+   AA  G    + +L  AG  +  + 
Sbjct: 16  AVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAE 75

Query: 133 ATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHI 192
                               G  ALHLA +    T    LL+                  
Sbjct: 76  ------------------RGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQ 117

Query: 193 AA 194
             
Sbjct: 118 DC 119

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 52.5 bits (127), Expect = 1e-08
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 3/47 (6%)

Query: 151 NNGLNALHLAAKDGHTTVVKALLKGG---CKVDASTKKGNTALHIAA 194
            +G  ALHLA    H   +  LL        +D     G TALH+AA
Sbjct: 7   EDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAA 53

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 79.6 bits (197), Expect = 3e-18
 Identities = 32/142 (22%), Positives = 55/142 (38%), Gaps = 23/142 (16%)

Query: 70  TSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDIN 129
             +L   + GH            D+ +       T +  AAR      L +LLE   D++
Sbjct: 17  MEYLIEWKDGHSPSWVPSSYIAADVVSEY----ETPWWTAARKADEQALSQLLE-DRDVD 71

Query: 130 TSNAT------------SKK-----LDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKAL 172
             +              S K      +   ++  ++    GL ALH+AA      VV+AL
Sbjct: 72  AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRD-MRGGLTALHMAAGYVRPEVVEAL 130

Query: 173 LKGGCKVDASTKKGNTALHIAA 194
           ++ G  ++   ++G TAL +A 
Sbjct: 131 VELGADIEVEDERGLTALELAR 152

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 68.4 bits (168), Expect = 4e-14
 Identities = 20/134 (14%), Positives = 36/134 (26%), Gaps = 7/134 (5%)

Query: 70  TSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDIN 129
           T+   AA     + +  L+E G DI   +     T+   A            ++ G  I 
Sbjct: 113 TALHMAAGYVRPEVVEALVELGADIEVED-ERGLTALELAREILKTTPKGNPMQFGRRIG 171

Query: 130 TSNATSKKLDNQLNIHQK---NIKNN-GLNALHLAAKDGHTTVVKALLKGGCKVDASTKK 185
                +          +      K   G +  +L                  +  A  K 
Sbjct: 172 LEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVA--KD 229

Query: 186 GNTALHIAALDSLV 199
               L  A  +S++
Sbjct: 230 YEDGLEYAVAESVI 243

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 67.6 bits (166), Expect = 6e-14
 Identities = 25/121 (20%), Positives = 42/121 (34%), Gaps = 21/121 (17%)

Query: 75  AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNAT 134
            A  G    +R L EAG D++  +     T+   AA     + +  L+E G DI   +  
Sbjct: 84  VAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVED-- 141

Query: 135 SKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
                             GL AL LA +   TT     ++ G ++     +    +    
Sbjct: 142 ----------------ERGLTALELAREILKTTPKGNPMQFGRRIGL---EKVINVLEGQ 182

Query: 195 L 195
           +
Sbjct: 183 V 183

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 62.6 bits (153), Expect = 4e-12
 Identities = 19/101 (18%), Positives = 29/101 (28%), Gaps = 22/101 (21%)

Query: 94  INTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNG 153
           I +  A +    +L   + GH            D+ +   T                   
Sbjct: 7   IGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYET------------------- 47

Query: 154 LNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
                 AA+      +  LL+    VDA  + G TAL   A
Sbjct: 48  --PWWTAARKADEQALSQLLEDRD-VDAVDENGRTALLFVA 85

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 78.2 bits (194), Expect = 3e-18
 Identities = 30/129 (23%), Positives = 45/129 (34%), Gaps = 20/129 (15%)

Query: 67  DPNTSFLRAARAGHLDKLRELLEAG-VDINTSNASDPNTSFLRAARAGHLDKLRELLEAG 125
           +         R G+   +R  L+    D+N  +     +    A R G    +  L+  G
Sbjct: 4   EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHG-FSPLHWACREGRSAVVEMLIMRG 62

Query: 126 VDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKK 185
             IN  N                        LHLAA  GH  +V+ LL+    ++A  + 
Sbjct: 63  ARINVMN------------------RGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEH 104

Query: 186 GNTALHIAA 194
           GN  LH A 
Sbjct: 105 GNVPLHYAC 113

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 77.1 bits (191), Expect = 7e-18
 Identities = 33/120 (27%), Positives = 44/120 (36%), Gaps = 19/120 (15%)

Query: 75  AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNAT 134
           A R G    +  L+  G  IN  N  D +T    AA  GH D +++LL+   DIN  N  
Sbjct: 46  ACREGRSAVVEMLIMRGARINVMNRGD-DTPLHLAASHGHRDIVQKLLQYKADINAVN-- 102

Query: 135 SKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
                            +G   LH A   G   V + L+  G  V    K G   +  A 
Sbjct: 103 ----------------EHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAK 146

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 60.9 bits (149), Expect = 6e-12
 Identities = 21/120 (17%), Positives = 34/120 (28%), Gaps = 25/120 (20%)

Query: 75  AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNAT 134
           AA  GH D +++LL+   DIN  N    N     A   G      +L+  G  ++  N  
Sbjct: 79  AASHGHRDIVQKLLQYKADINAVN-EHGNVPLHYACFWGQDQVAEDLVANGALVSICN-- 135

Query: 135 SKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
                             G   +  A       + +   K G  ++              
Sbjct: 136 ----------------KYGEMPVDKAKAPLRELLRERAEKMGQNLNR------IPYKDTF 173

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 56.3 bits (137), Expect = 3e-10
 Identities = 7/45 (15%), Positives = 17/45 (37%), Gaps = 1/45 (2%)

Query: 151 NNGLNALHLAAKDGHTTVVKALL-KGGCKVDASTKKGNTALHIAA 194
              ++ +    ++G+   V+  L      ++     G + LH A 
Sbjct: 3   PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWAC 47

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 39.3 bits (93), Expect = 3e-04
 Identities = 11/98 (11%), Positives = 19/98 (19%), Gaps = 25/98 (25%)

Query: 69  NTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDI 128
           N     A   G      +L+  G  ++  N         +A             + G ++
Sbjct: 106 NVPLHYACFWGQDQVAEDLVANGALVSICN-KYGEMPVDKAKAPLRELLRERAEKMGQNL 164

Query: 129 NTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHT 166
           N                                  G T
Sbjct: 165 NRIP------------------------YKDTFWKGTT 178

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 79.0 bits (196), Expect = 3e-18
 Identities = 27/124 (21%), Positives = 43/124 (34%), Gaps = 22/124 (17%)

Query: 75  AARAGHLDKLRELLEAGVDINTSNASDPN--TSFLRAARAGHLDKLRELLE--AGVDINT 130
           +      +    LL    ++N  +  D +  T F  A   G+L+ ++ L +     D+N 
Sbjct: 43  SVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNK 102

Query: 131 SNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTAL 190
                               N G+  LHLA       V + L++ G  V    K     L
Sbjct: 103 IT------------------NQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPL 144

Query: 191 HIAA 194
           H AA
Sbjct: 145 HRAA 148

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 73.6 bits (182), Expect = 3e-16
 Identities = 26/129 (20%), Positives = 44/129 (34%), Gaps = 19/129 (14%)

Query: 69  NTSFLRAARAGHLDKLRELLEA-GVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVD 127
           N    +A       K++ELL +    +   +  D       +      +    LL    +
Sbjct: 3   NYPLHQACMENEFFKVQELLHSKPSLLLQKD-QDGRIPLHWSVSFQAHEITSFLLSKMEN 61

Query: 128 INTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVD--ASTKK 185
           +N  +                  ++G    H+A   G+  VVK+L     K D    T +
Sbjct: 62  VNLDDYPD---------------DSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQ 106

Query: 186 GNTALHIAA 194
           G T LH+A 
Sbjct: 107 GVTCLHLAV 115

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 69.8 bits (172), Expect = 8e-15
 Identities = 25/122 (20%), Positives = 37/122 (30%), Gaps = 21/122 (17%)

Query: 75  AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGV-DINTSNA 133
           A      +  + L+E G  +   +         RAA  G L  +  L   G   +N  + 
Sbjct: 114 AVGKKWFEVSQFLIENGASVRIKD-KFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQD- 171

Query: 134 TSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALL-KGGCKVDASTKKGNTALHI 192
                              G   L  A  +GH      L+ K G + D    KG  A  +
Sbjct: 172 -----------------KQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDV 214

Query: 193 AA 194
           A 
Sbjct: 215 AL 216

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 76.3 bits (189), Expect = 4e-18
 Identities = 43/129 (33%), Positives = 57/129 (44%), Gaps = 19/129 (14%)

Query: 66  SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG 125
           SD     L AARAG  D++R L+  G D+N  +     T    A   GHL+ +  LL+ G
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNAKD-EYGLTPLYLATAHGHLEIVEVLLKNG 70

Query: 126 VDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKK 185
            D+N  +                    G   LHLAA  GH  + + LLK G  V+A  K 
Sbjct: 71  ADVNAVD------------------AIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKF 112

Query: 186 GNTALHIAA 194
           G TA  I+ 
Sbjct: 113 GKTAFDISI 121

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 72.8 bits (180), Expect = 1e-16
 Identities = 35/104 (33%), Positives = 47/104 (45%), Gaps = 18/104 (17%)

Query: 91  GVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIK 150
           G   +  + SD     L AARAG  D++R L+  G D+N  +                  
Sbjct: 3   GSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKD------------------ 44

Query: 151 NNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
             GL  L+LA   GH  +V+ LLK G  V+A    G T LH+AA
Sbjct: 45  EYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAA 88

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 78.8 bits (195), Expect = 4e-18
 Identities = 28/129 (21%), Positives = 52/129 (40%), Gaps = 20/129 (15%)

Query: 67  DPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGV 126
           +P    L AA  G L+ +++ ++   D +  N  +  T+   A    +   +  L+ AG 
Sbjct: 20  NPLVLLLDAALTGELEVVQQAVKEMNDPSQPN-EEGITALHNAICGANYSIVDFLITAGA 78

Query: 127 DINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKK- 185
           ++N+ +                  ++G   LH AA    T +  AL++ G  + A+T   
Sbjct: 79  NVNSPD------------------SHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSD 120

Query: 186 GNTALHIAA 194
           G TA     
Sbjct: 121 GATAFEKCD 129

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 78.1 bits (193), Expect = 7e-18
 Identities = 25/112 (22%), Positives = 42/112 (37%), Gaps = 20/112 (17%)

Query: 85  RELLEAGVDINTSN--ASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQL 142
           R +L        +     +P    L AA  G L+ +++ ++   D +  N          
Sbjct: 2   RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPN---------- 51

Query: 143 NIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
                     G+ ALH A    + ++V  L+  G  V++    G T LH AA
Sbjct: 52  --------EEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAA 95

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 64.6 bits (158), Expect = 6e-13
 Identities = 22/132 (16%), Positives = 34/132 (25%), Gaps = 21/132 (15%)

Query: 66  SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARA--GHLDKLRELLE 123
           S   T    AA          L++ G  I  +  SD  T+F +      G+ D    L +
Sbjct: 85  SHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLAD 144

Query: 124 AGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDAST 183
               +   N                  +  + AL   +       +         V    
Sbjct: 145 VEQSMGLMN------------------SGAVYALWDYSA-EFGDELSFREGESVTVLRRD 185

Query: 184 KKGNTALHIAAL 195
               T    AAL
Sbjct: 186 GPEETDWWWAAL 197

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 55.3 bits (134), Expect = 1e-09
 Identities = 17/78 (21%), Positives = 24/78 (30%), Gaps = 15/78 (19%)

Query: 119 RELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCK 178
           R +L        +                  + N L  L  AA  G   VV+  +K    
Sbjct: 2   RSVLRKAGSPRKAR---------------RARLNPLVLLLDAALTGELEVVQQAVKEMND 46

Query: 179 VDASTKKGNTALHIAALD 196
                ++G TALH A   
Sbjct: 47  PSQPNEEGITALHNAICG 64

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 78.6 bits (195), Expect = 5e-18
 Identities = 33/125 (26%), Positives = 50/125 (40%), Gaps = 19/125 (15%)

Query: 70  TSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDIN 129
           T  + A    H+D ++ LL  G DIN  +  + N     AA +G +D    LL A  D++
Sbjct: 113 TPMIWATEYKHVDLVKLLLSKGSDINIRDNEE-NICLHWAAFSGCVDIAEILLAAKCDLH 171

Query: 130 TSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTA 189
             N                   +G + LH+AA++     V   L     V    K+G T 
Sbjct: 172 AVN------------------IHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETP 213

Query: 190 LHIAA 194
           L  A+
Sbjct: 214 LQCAS 218

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 78.2 bits (194), Expect = 8e-18
 Identities = 38/121 (31%), Positives = 56/121 (46%), Gaps = 20/121 (16%)

Query: 75  AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNAT 134
           AA AGH+D    L++AG +I+T +  D  T  + AA   HL+ ++ L++AG  ++  +  
Sbjct: 18  AAEAGHVDICHMLVQAGANIDTCS-EDQRTPLMEAAENNHLEAVKYLIKAGALVDPKD-- 74

Query: 135 SKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALL-KGGCKVDASTKKGNTALHIA 193
                             G   LHLAAK GH  VV+ LL  G   V+     G T +  A
Sbjct: 75  ----------------AEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWA 118

Query: 194 A 194
            
Sbjct: 119 T 119

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 76.7 bits (190), Expect = 3e-17
 Identities = 39/143 (27%), Positives = 67/143 (46%), Gaps = 21/143 (14%)

Query: 70  TSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG-VDI 128
           T  + AA   HL+ ++ L++AG  ++  + ++ +T    AA+ GH + ++ LL  G +D+
Sbjct: 46  TPLMEAAENNHLEAVKYLIKAGALVDPKD-AEGSTCLHLAAKKGHYEVVQYLLSNGQMDV 104

Query: 129 NTSN---------ATSKK--------LDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKA 171
           N  +         AT  K        L    +I+ ++  N     LH AA  G   + + 
Sbjct: 105 NCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRD--NEENICLHWAAFSGCVDIAEI 162

Query: 172 LLKGGCKVDASTKKGNTALHIAA 194
           LL   C + A    G++ LHIAA
Sbjct: 163 LLAAKCDLHAVNIHGDSPLHIAA 185

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 69.4 bits (171), Expect = 1e-14
 Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 19/103 (18%)

Query: 92  VDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKN 151
           ++    +  +  +    AA AGH+D    L++AG +I+T +                   
Sbjct: 2   MNFKMEH-QNKRSPLHAAAEAGHVDICHMLVQAGANIDTCS------------------E 42

Query: 152 NGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
           +    L  AA++ H   VK L+K G  VD    +G+T LH+AA
Sbjct: 43  DQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAA 85

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 58.6 bits (143), Expect = 1e-10
 Identities = 21/108 (19%), Positives = 32/108 (29%), Gaps = 19/108 (17%)

Query: 69  NTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDI 128
           N     AA +G +D    LL A  D++  N    ++    AAR    D +   L    D+
Sbjct: 145 NICLHWAAFSGCVDIAEILLAAKCDLHAVN-IHGDSPLHIAARENRYDCVVLFLSRDSDV 203

Query: 129 NTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGG 176
              N                    G   L  A+ +        + K  
Sbjct: 204 TLKN------------------KEGETPLQCASLNSQVWSALQMSKAL 233

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 79.5 bits (197), Expect = 5e-18
 Identities = 15/121 (12%), Positives = 36/121 (29%), Gaps = 20/121 (16%)

Query: 75  AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNAT 134
           A  +G++  ++  ++    +     +   TSF  A     +  +   L            
Sbjct: 102 AVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD---- 157

Query: 135 SKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNT-ALHIA 193
                              L+ +H+  K+GH  ++  LL      + +        + +A
Sbjct: 158 ---------------LAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLA 202

Query: 194 A 194
            
Sbjct: 203 I 203

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 78.3 bits (194), Expect = 1e-17
 Identities = 24/127 (18%), Positives = 46/127 (36%), Gaps = 22/127 (17%)

Query: 69  NTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDI 128
           +++   A    ++  +  LL AG   N     +      +AA       ++ LL +G+D 
Sbjct: 32  HSASYYAIADNNVRLVCTLLNAGALKN---LLENEFPLHQAATLEDTKIVKILLFSGLDD 88

Query: 129 NTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKG-N 187
           +  +                  + G  AL+ A   G+   VK  +K   ++    K G  
Sbjct: 89  SQFD------------------DKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWK 130

Query: 188 TALHIAA 194
           T+ + A 
Sbjct: 131 TSFYHAV 137

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 74.5 bits (184), Expect = 3e-16
 Identities = 27/122 (22%), Positives = 40/122 (32%), Gaps = 22/122 (18%)

Query: 73  LRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSN 132
           L         +L+  L +  D   ++    +++   A    ++  +  LL AG   N   
Sbjct: 4   LSRINTWKSKQLKSFL-SSKDTFKADVHG-HSASYYAIADNNVRLVCTLLNAGALKNLLE 61

Query: 133 ATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHI 192
                                   LH AA    T +VK LL  G        KGNTAL+ 
Sbjct: 62  --------------------NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYY 101

Query: 193 AA 194
           A 
Sbjct: 102 AV 103

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 71.8 bits (177), Expect = 3e-15
 Identities = 16/128 (12%), Positives = 39/128 (30%), Gaps = 19/128 (14%)

Query: 67  DPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGV 126
           +      +AA       ++ LL +G+D +  +    NT+   A  +G++  ++  ++   
Sbjct: 61  ENEFPLHQAATLEDTKIVKILLFSGLDDSQFD-DKGNTALYYAVDSGNMQTVKLFVKKNW 119

Query: 127 DINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKG 186
            +                     K     + + A      ++V   L             
Sbjct: 120 RLMFYG-----------------KTGWKTSFYHAVMLNDVSIVSYFLSEIP-STFDLAIL 161

Query: 187 NTALHIAA 194
            + +HI  
Sbjct: 162 LSCIHITI 169

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 65.2 bits (160), Expect = 7e-13
 Identities = 14/120 (11%), Positives = 36/120 (30%), Gaps = 25/120 (20%)

Query: 75  AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNAT 134
             + GH+D +  LL+     NT+N+         A     ++ L+ L +  ++I +    
Sbjct: 168 TIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYS---- 223

Query: 135 SKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
                                A           + K +++   +  + +   +  +    
Sbjct: 224 ---------------------ANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIVKNN 262

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 75.5 bits (187), Expect = 6e-18
 Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 19/117 (16%)

Query: 75  AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNAT 134
           AA+ GH +++++LL  G D+N  +  D NT    AA+ GH + ++ LL  G D+N  +  
Sbjct: 16  AAKNGHAEEVKKLLSKGADVNARS-KDGNTPLHLAAKNGHAEIVKLLLAKGADVNARS-- 72

Query: 135 SKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALH 191
                            +G    HLA K+GH  +VK L   G  V+A +   +   H
Sbjct: 73  ----------------KDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 67.4 bits (166), Expect = 6e-15
 Identities = 34/97 (35%), Positives = 49/97 (50%), Gaps = 18/97 (18%)

Query: 98  NASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNAL 157
            + D NT    AA+ GH +++++LL  G D+N  +                   +G   L
Sbjct: 5   GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARS------------------KDGNTPL 46

Query: 158 HLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
           HLAAK+GH  +VK LL  G  V+A +K GNT  H+A 
Sbjct: 47  HLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAK 83

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 77.5 bits (192), Expect = 1e-17
 Identities = 27/126 (21%), Positives = 43/126 (34%), Gaps = 19/126 (15%)

Query: 69  NTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDI 128
            T  + AAR      L +L+ +  D+N  +     ++   AA   ++D    LL+ G + 
Sbjct: 93  TTPLILAARLAVEGMLEDLINSHADVNAVD-DLGKSALHWAAAVNNVDAAVVLLKNGANK 151

Query: 129 NTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNT 188
           +  N                  N     L LAA++G     K LL      D +      
Sbjct: 152 DMQN------------------NREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRL 193

Query: 189 ALHIAA 194
              IA 
Sbjct: 194 PRDIAQ 199

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 71.3 bits (176), Expect = 2e-15
 Identities = 29/126 (23%), Positives = 47/126 (37%), Gaps = 18/126 (14%)

Query: 69  NTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDI 128
            T+   AAR    D  + LLEA  D N  + +   T    A  A      + L+      
Sbjct: 26  ETALHLAARYSRSDAAKRLLEASADANIQD-NMGRTPLHAAVSADAQGVFQILIRNRAT- 83

Query: 129 NTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNT 188
                         ++  +   ++G   L LAA+     +++ L+     V+A    G +
Sbjct: 84  --------------DLDARM--HDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKS 127

Query: 189 ALHIAA 194
           ALH AA
Sbjct: 128 ALHWAA 133

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 68.6 bits (169), Expect = 2e-14
 Identities = 26/118 (22%), Positives = 38/118 (32%), Gaps = 19/118 (16%)

Query: 78  AGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKK 137
                 + + +  G  ++        T+   AAR    D  + LLEA  D N  +     
Sbjct: 1   GDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQD----- 55

Query: 138 LDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALL-KGGCKVDASTKKGNTALHIAA 194
                        N G   LH A       V + L+      +DA    G T L +AA
Sbjct: 56  -------------NMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAA 100

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 76.6 bits (189), Expect = 1e-17
 Identities = 19/133 (14%), Positives = 29/133 (21%), Gaps = 26/133 (19%)

Query: 70  TSFLRAARAGHLDKLRELLEAGVDINTSNASDPN--TSFLRAARAGHLDKLRELLEAGVD 127
            +   AA  G  +   EL E G +   S                         L+  G D
Sbjct: 8   RTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGAD 67

Query: 128 INTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTV------VKALLKGGCKVDA 181
           I +                      G        + G   +       K  L+ G  + A
Sbjct: 68  IKSRT------------------KEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITA 109

Query: 182 STKKGNTALHIAA 194
             K     +    
Sbjct: 110 LYKPYKIVVFKNI 122

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 67.8 bits (166), Expect = 3e-14
 Identities = 20/98 (20%), Positives = 30/98 (30%), Gaps = 15/98 (15%)

Query: 97  SNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNA 156
           SNA     +   AA  G  +   EL E G +   S   S               N   + 
Sbjct: 1   SNAMSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKS---------------NILYDV 45

Query: 157 LHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
           L     +    +   L+  G  + + TK+G T      
Sbjct: 46  LRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLF 83

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 57.4 bits (139), Expect = 1e-10
 Identities = 17/126 (13%), Positives = 30/126 (23%), Gaps = 32/126 (25%)

Query: 69  NTSFLRAARAGHLDKLRE------LLEAGVDINTSNASDPNTSFLRAARAGHLDKLRE-- 120
            T F    + G  D           LE G DI             +      +D+     
Sbjct: 76  TTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPY-KIVVFKNIFNYFVDENEMIP 134

Query: 121 -----LLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKG 175
                  ++G+ +   +                    GL AL    +      +K +   
Sbjct: 135 LYKLIFSQSGLQLLIKD------------------KWGLTALEFVKRCQKPIALKMMEDY 176

Query: 176 GCKVDA 181
             K + 
Sbjct: 177 IKKYNL 182

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 77.2 bits (191), Expect = 2e-17
 Identities = 29/125 (23%), Positives = 46/125 (36%), Gaps = 22/125 (17%)

Query: 75  AARAGHLDKLRELLEAGVDINTS---NASDPN--TSFLRAARAGHLDKLRELLEAGVDIN 129
           A   G L  +  L ++    +      A++ N  T    A+  G+L  +  L+  G D+N
Sbjct: 85  ACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVN 144

Query: 130 TSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTA 189
                                 NG  ALHLA    +  +V  LLK G  V+  T +G + 
Sbjct: 145 AQE-----------------PCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSP 187

Query: 190 LHIAA 194
             +  
Sbjct: 188 YQLTW 192

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 69.1 bits (170), Expect = 1e-14
 Identities = 19/122 (15%), Positives = 36/122 (29%), Gaps = 18/122 (14%)

Query: 75  AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNAT 134
           A+  G+L  +  L+  G D+N     +  T+   A    + D +  LL+ G D+N     
Sbjct: 124 ASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVT-- 181

Query: 135 SKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
                             G +   L      T + + L +   +      +         
Sbjct: 182 ----------------YQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDT 225

Query: 195 LD 196
             
Sbjct: 226 ES 227

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 64.5 bits (158), Expect = 7e-13
 Identities = 25/131 (19%), Positives = 38/131 (29%), Gaps = 29/131 (22%)

Query: 75  AARAGHLDKLRE----LLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINT 130
           A          E    +      +N  N +   T    A      +    LL AG D   
Sbjct: 15  AIIHEEKALTMEVIRQVKGDLAFLNFQN-NLQQTPLHLAVITNQPEIAEALLGAGCDPEL 73

Query: 131 SNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGG------CKVDASTK 184
            +                    G   LHLA + G    V  L +          + A+  
Sbjct: 74  RD------------------FRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNY 115

Query: 185 KGNTALHIAAL 195
            G+T LH+A++
Sbjct: 116 NGHTCLHLASI 126

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 49.9 bits (120), Expect = 1e-07
 Identities = 11/55 (20%), Positives = 20/55 (36%), Gaps = 6/55 (10%)

Query: 145 HQKNIKNNGLNALHLAAKDGHTT----VVKALLKGGCKVDASTKKGNTALHIAAL 195
            Q     +G + LHLA           V++ +      ++       T LH+A +
Sbjct: 2   QQLT--EDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVI 54

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 77.1 bits (191), Expect = 2e-17
 Identities = 26/120 (21%), Positives = 41/120 (34%), Gaps = 19/120 (15%)

Query: 75  AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNAT 134
           AAR      L +L+ +  D+N  +     ++   AA   ++D    LL+ G + +  N  
Sbjct: 131 AARLAVEGMLEDLINSHADVNAVD-DLGKSALHWAAAVNNVDAAVVLLKNGANKDMQN-- 187

Query: 135 SKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
                           N     L LAA++G     K LL      D +         IA 
Sbjct: 188 ----------------NREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQ 231

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 73.7 bits (182), Expect = 4e-16
 Identities = 28/121 (23%), Positives = 43/121 (35%), Gaps = 20/121 (16%)

Query: 75  AARAGHLDKLRELLEAG-VDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNA 133
           A  A      + L+     D++     D  T  + AAR      L +L+ +  D+N  + 
Sbjct: 97  AVSADAQGVFQILIRNRATDLDARM-HDGTTPLILAARLAVEGMLEDLINSHADVNAVD- 154

Query: 134 TSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIA 193
                            + G +ALH AA   +      LLK G   D    +  T L +A
Sbjct: 155 -----------------DLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLA 197

Query: 194 A 194
           A
Sbjct: 198 A 198

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 70.2 bits (173), Expect = 8e-15
 Identities = 27/132 (20%), Positives = 40/132 (30%), Gaps = 19/132 (14%)

Query: 64  CYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLE 123
           C      +            + + +  G  ++        T+   AAR    D  + LLE
Sbjct: 19  CSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLE 78

Query: 124 AGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALL-KGGCKVDAS 182
           A  D N  +                  N G   LH A       V + L+      +DA 
Sbjct: 79  ASADANIQD------------------NMGRTPLHAAVSADAQGVFQILIRNRATDLDAR 120

Query: 183 TKKGNTALHIAA 194
              G T L +AA
Sbjct: 121 MHDGTTPLILAA 132

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 56.7 bits (138), Expect = 5e-10
 Identities = 21/116 (18%), Positives = 33/116 (28%), Gaps = 31/116 (26%)

Query: 92  VDINTSN---------AS---DPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLD 139
           +D+N            AS       +            + + +  G  ++          
Sbjct: 1   MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLH---------- 50

Query: 140 NQLNIHQKNIK-NNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
                   N     G  ALHLAA+   +   K LL+     +     G T LH A 
Sbjct: 51  --------NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAV 98

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 76.1 bits (188), Expect = 4e-17
 Identities = 29/125 (23%), Positives = 53/125 (42%), Gaps = 9/125 (7%)

Query: 75  AARAGHLDKLRELLEAGVDINTS--NASDPN--TSFLRAARAGHLDKLRELLEAGVDINT 130
           AA   +L+    L+EA  ++      +      T+   A    +++ +R LL  G  ++ 
Sbjct: 44  AALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVS- 102

Query: 131 SNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTAL 190
               ++   +  +    N+   G + L  AA  G   +V+ L++ G  + A    GNT L
Sbjct: 103 ----ARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVL 158

Query: 191 HIAAL 195
           HI  L
Sbjct: 159 HILIL 163

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 66.1 bits (162), Expect = 2e-13
 Identities = 33/139 (23%), Positives = 53/139 (38%), Gaps = 28/139 (20%)

Query: 70  TSFLRAARAGHLDKLRELLEA-GVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDI 128
           +  L AA+   +  L +LL+  G +++   A    T+   AA   +L+    L+EA  ++
Sbjct: 5   SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMG-ETALHIAALYDNLEAAMVLMEAAPEL 63

Query: 129 NTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKK--- 185
                TS+                G  ALH+A  + +  +V+ALL  G  V A       
Sbjct: 64  VFEPMTSEL-------------YEGQTALHIAVINQNVNLVRALLARGASVSARATGSVF 110

Query: 186 ----------GNTALHIAA 194
                     G   L  AA
Sbjct: 111 HYRPHNLIYYGEHPLSFAA 129

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 57.6 bits (140), Expect = 2e-10
 Identities = 22/142 (15%), Positives = 38/142 (26%), Gaps = 40/142 (28%)

Query: 75  AARAGHLDKLRELLEAGVDINTSNASDPNTSFLR------------AARAGHLDKLRELL 122
           A    +++ +R LL  G  ++                         AA  G  + +R L+
Sbjct: 82  AVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLI 141

Query: 123 EAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDA- 181
           E G DI   +                  + G   LH+     + T    +       D  
Sbjct: 142 EHGADIRAQD------------------SLGNTVLHILILQPNKTFACQMYNLLLSYDGG 183

Query: 182 ---------STKKGNTALHIAA 194
                       +G T   +A 
Sbjct: 184 DHLKSLELVPNNQGLTPFKLAG 205

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 46.4 bits (111), Expect = 1e-06
 Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 153 GLNALHLAAKDGHT-TVVKALLKGGCKVDASTKKGNTALHIAAL 195
             + L LAAK+     + K L   GC+V      G TALHIAAL
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAAL 46

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 74.3 bits (184), Expect = 5e-17
 Identities = 32/130 (24%), Positives = 52/130 (40%), Gaps = 20/130 (15%)

Query: 66  SDPNTSFLRAARAGHLDKLRELLEA-GVDINTSNASDPNTSFLRAARAGHLDKLRELLEA 124
           S+ +   L AA+AG ++ +++L     V+         +T    AA    +  +  LL+ 
Sbjct: 6   SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIE-GRQSTPLHFAAGYNRVSVVEYLLQH 64

Query: 125 GVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTK 184
           G D++  +                    GL  LH A   GH  V + L+K G  V+ +  
Sbjct: 65  GADVHAKD------------------KGGLVPLHNACSYGHYEVAELLVKHGAVVNVADL 106

Query: 185 KGNTALHIAA 194
              T LH AA
Sbjct: 107 WKFTPLHEAA 116

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 50.5 bits (122), Expect = 3e-08
 Identities = 13/48 (27%), Positives = 16/48 (33%), Gaps = 1/48 (2%)

Query: 148 NIKNNGLNALHLAAKDGHTTVVKALL-KGGCKVDASTKKGNTALHIAA 194
              +     L  AAK G    VK L             + +T LH AA
Sbjct: 3   MGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAA 50

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 45.5 bits (109), Expect = 2e-06
 Identities = 21/102 (20%), Positives = 32/102 (31%), Gaps = 20/102 (19%)

Query: 75  AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNAT 134
           A   GH +    L++ G  +N ++     T    AA  G  +  + LL+ G D    N  
Sbjct: 82  ACSYGHYEVAELLVKHGAVVNVAD-LWKFTPLHEAAAKGKYEICKLLLQHGADPTKKN-- 138

Query: 135 SKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGG 176
                            +G   L L    G T +   L    
Sbjct: 139 ----------------RDGNTPLDLVKD-GDTDIQDLLRGDA 163

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 74.7 bits (185), Expect = 6e-17
 Identities = 24/126 (19%), Positives = 50/126 (39%), Gaps = 19/126 (15%)

Query: 69  NTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDI 128
            T  + A   G  + + +L+E    +   +  + +T+ + A +   L    +LL  G ++
Sbjct: 36  RTPLMVACMLGMENAIDKLVENFDKLEDKD-IEGSTALIWAVKNNRLGIAEKLLSKGSNV 94

Query: 129 NTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNT 188
           NT +                   +G   L  +   G++ +   LL+ G  V+    +G T
Sbjct: 95  NTKD------------------FSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGET 136

Query: 189 ALHIAA 194
            L +A+
Sbjct: 137 PLIVAS 142

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 54.3 bits (132), Expect = 2e-09
 Identities = 15/76 (19%), Positives = 36/76 (47%), Gaps = 6/76 (7%)

Query: 125 GVDINTSNATSKKLDNQLNIHQ-----KNIKNN-GLNALHLAAKDGHTTVVKALLKGGCK 178
           G  ++ +    +K+ ++ +I+Q     +N +++     L +A   G    +  L++   K
Sbjct: 1   GSHMDKNGEIVEKIKDEKSINQNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDK 60

Query: 179 VDASTKKGNTALHIAA 194
           ++    +G+TAL  A 
Sbjct: 61  LEDKDIEGSTALIWAV 76

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 50.9 bits (123), Expect = 3e-08
 Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 19/105 (18%)

Query: 69  NTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDI 128
            T  + +   G+ +    LLE G ++N  N  +  T  + A++ G  + +++LLE G DI
Sbjct: 102 KTPLMWSIIFGYSEMSYFLLEHGANVNDRN-LEGETPLIVASKYGRSEIVKKLLELGADI 160

Query: 129 NTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALL 173
           +  +                    GL A   A   G   V+K   
Sbjct: 161 SARD------------------LTGLTAEASARIFGRQEVIKIFT 187

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 69.3 bits (171), Expect = 7e-16
 Identities = 37/86 (43%), Positives = 47/86 (54%), Gaps = 18/86 (20%)

Query: 109 AARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTV 168
           AAR GHL+ ++ LLEAG D+N  +                   NG   LHLAA++GH  V
Sbjct: 9   AARNGHLEVVKLLLEAGADVNAKD------------------KNGRTPLHLAARNGHLEV 50

Query: 169 VKALLKGGCKVDASTKKGNTALHIAA 194
           VK LL+ G  V+A  K G T LH+AA
Sbjct: 51  VKLLLEAGADVNAKDKNGRTPLHLAA 76

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 64.7 bits (159), Expect = 4e-14
 Identities = 42/102 (41%), Positives = 56/102 (54%), Gaps = 19/102 (18%)

Query: 75  AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNAT 134
           AAR GHL+ ++ LLEAG D+N  +  +  T    AAR GHL+ ++ LLEAG D+N  +  
Sbjct: 9   AARNGHLEVVKLLLEAGADVNAKD-KNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD-- 65

Query: 135 SKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGG 176
                            NG   LHLAA++GH  VVK LL+ G
Sbjct: 66  ----------------KNGRTPLHLAARNGHLEVVKLLLEAG 91

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 58.5 bits (143), Expect = 7e-12
 Identities = 24/43 (55%), Positives = 29/43 (67%)

Query: 152 NGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
           NG   LHLAA++GH  VVK LL+ G  V+A  K G T LH+AA
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA 43

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 73.8 bits (182), Expect = 1e-15
 Identities = 22/122 (18%), Positives = 38/122 (31%), Gaps = 12/122 (9%)

Query: 73  LRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSN 132
           L    AG       +    V+I         T     A     +K  +L+         +
Sbjct: 98  LHTEAAGSYAITEPITRESVNIIDPR--HNRTVLHWIASNSSAEKSEDLI--------VH 147

Query: 133 ATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHI 192
              + +    +++  +   +    L LA       +V  L+K G       K   +ALH 
Sbjct: 148 EAKECIAAGADVNAMD--CDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQ 205

Query: 193 AA 194
           AA
Sbjct: 206 AA 207

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 72.7 bits (179), Expect = 3e-15
 Identities = 27/137 (19%), Positives = 56/137 (40%), Gaps = 29/137 (21%)

Query: 69  NTSFLRAARAGHLDKL---RELLEAGVDINTSNASDPN-------TSFLRAARAGHLDKL 118
            T+ +  A     D++   + L+E G  ++   A+  +       T+   AA+  ++  +
Sbjct: 236 MTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIV 295

Query: 119 RELL-EAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGC 177
           + L+ E G + +  +                   +G   + LAA++G   VV  L++ G 
Sbjct: 296 KYLVGEKGSNKDKQD------------------EDGKTPIMLAAQEGRIEVVMYLIQQGA 337

Query: 178 KVDASTKKGNTALHIAA 194
            V+A     +TA  +A 
Sbjct: 338 SVEAVDATDHTARQLAQ 354

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 69.2 bits (170), Expect = 4e-14
 Identities = 30/137 (21%), Positives = 49/137 (35%), Gaps = 30/137 (21%)

Query: 69  NTSFLRAARAGHLD--------KLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRE 120
            T     A     +        + +E + AG D+N  +  D NT  + A  A     +  
Sbjct: 126 RTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMD-CDENTPLMLAVLARRRRLVAY 184

Query: 121 LLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALL---KGGC 177
           L++AG D    N                   +  +ALH AA +    ++  +L   K   
Sbjct: 185 LMKAGADPTIYN------------------KSERSALHQAAANRDFGMMVYMLNSTKLKG 226

Query: 178 KVDASTKKGNTALHIAA 194
            ++   + G TAL I A
Sbjct: 227 DIEELDRNGMTALMIVA 243

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 66.9 bits (164), Expect = 3e-13
 Identities = 17/136 (12%), Positives = 27/136 (19%), Gaps = 29/136 (21%)

Query: 67  DPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGV 126
                  +    G+                    +     L    AG       +    V
Sbjct: 60  YSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPE-PESPIK-LHTEAAGSYAITEPITRESV 117

Query: 127 DINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVV--------KALLKGGCK 178
           +I                       +    LH  A +              K  +  G  
Sbjct: 118 NIID-------------------PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGAD 158

Query: 179 VDASTKKGNTALHIAA 194
           V+A     NT L +A 
Sbjct: 159 VNAMDCDENTPLMLAV 174

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 60.0 bits (146), Expect = 7e-11
 Identities = 33/140 (23%), Positives = 49/140 (35%), Gaps = 33/140 (23%)

Query: 69  NTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLE---AG 125
           NT  + A  A     +  L++AG D    N     ++  +AA       +  +L      
Sbjct: 167 NTPLMLAVLARRRRLVAYLMKAGADPTIYN-KSERSALHQAAANRDFGMMVYMLNSTKLK 225

Query: 126 VDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHT---TVVKALLKGGCKV--- 179
            DI   +                   NG+ AL + A +         K L++ G KV   
Sbjct: 226 GDIEELD------------------RNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYD 267

Query: 180 -----DASTKKGNTALHIAA 194
                D+   KG TALH AA
Sbjct: 268 GAARKDSEKYKGRTALHYAA 287

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 53.0 bits (128), Expect = 2e-08
 Identities = 7/61 (11%), Positives = 16/61 (26%)

Query: 138 LDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDS 197
            D  +   +  +++  L        +G+  +                +    LH  A  S
Sbjct: 46  YDGYIKRQRNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTEAAGS 105

Query: 198 L 198
            
Sbjct: 106 Y 106

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 72.1 bits (177), Expect = 2e-15
 Identities = 27/133 (20%), Positives = 43/133 (32%), Gaps = 13/133 (9%)

Query: 75  AARAGHLDKLRELLEAGVDINTSNASDPNTSFLR------------AARAGHLDKLRELL 122
           A     L  ++ L+E G D++                         AA     D +  LL
Sbjct: 97  AIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLL 156

Query: 123 EAGVDINTSNATSKKLDNQLNIHQKNIKNN-GLNALHLAAKDGHTTVVKALLKGGCKVDA 181
           E      +  AT    +  L+       N+   +AL +   DG   +   L       + 
Sbjct: 157 ENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEI 216

Query: 182 STKKGNTALHIAA 194
           S  +G T L +AA
Sbjct: 217 SNHQGLTPLKLAA 229

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 66.7 bits (163), Expect = 2e-13
 Identities = 28/134 (20%), Positives = 45/134 (33%), Gaps = 18/134 (13%)

Query: 76  ARAGHLDKLRELLEAGVDINTSNA---SDPNTSFLR-------AARAGHLDKLRELLEAG 125
            + G    +  LL+   D         +     F +       A     L  ++ L+E G
Sbjct: 54  LQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENG 113

Query: 126 VDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCK---VDAS 182
            D++      +        HQ      G   L LAA      VV  LL+   +   ++A+
Sbjct: 114 ADVHL-----RACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEAT 168

Query: 183 TKKGNTALHIAALD 196
              GNT LH   + 
Sbjct: 169 DSLGNTVLHALVMI 182

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 59.4 bits (144), Expect = 6e-11
 Identities = 24/131 (18%), Positives = 38/131 (29%), Gaps = 36/131 (27%)

Query: 75  AARAGHLDKLRELLEAGVDINTSNASD------------------PNTSFLRAARAGHLD 116
           AA     D +  LLE      +  A+D                   N++ +     G L 
Sbjct: 143 AACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQ 202

Query: 117 KLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGG 176
               L         SN                  + GL  L LAAK+G   + + +L+  
Sbjct: 203 MGARLCPTVQLEEISN------------------HQGLTPLKLAAKEGKIEIFRHILQRE 244

Query: 177 CKVDASTKKGN 187
               A+    +
Sbjct: 245 FSGAAAHHHHH 255

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 59.0 bits (143), Expect = 9e-11
 Identities = 27/149 (18%), Positives = 44/149 (29%), Gaps = 32/149 (21%)

Query: 70  TSFLRAARAGHLDKLRELLE--------AGVDINTSNASDPNTSFLRAA---RAGHLDKL 118
                    G  ++L  LLE              T  ++   T  ++A    + G    +
Sbjct: 4   DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTG-KTCLMKAVLNLQDGVNACI 62

Query: 119 RELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCK 178
             LL+   D       + K         +     G +ALH+A +      VK L++ G  
Sbjct: 63  MPLLQIDKDSG-----NPKPLVNAQCTDEF--YQGHSALHIAIEKRSLQCVKLLVENGAD 115

Query: 179 VDA-------------STKKGNTALHIAA 194
           V                   G   L +AA
Sbjct: 116 VHLRACGRFFQKHQGTCFYFGELPLSLAA 144

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 44.0 bits (104), Expect = 1e-05
 Identities = 15/83 (18%), Positives = 26/83 (31%), Gaps = 6/83 (7%)

Query: 52  HNAVISLEPCYDCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAAR 111
           H  V+         S  N++ +     G L     L         SN     T    AA+
Sbjct: 177 HALVM-----IADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISN-HQGLTPLKLAAK 230

Query: 112 AGHLDKLRELLEAGVDINTSNAT 134
            G ++  R +L+       ++  
Sbjct: 231 EGKIEIFRHILQREFSGAAAHHH 253

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 65.6 bits (160), Expect = 4e-13
 Identities = 30/149 (20%), Positives = 48/149 (32%), Gaps = 31/149 (20%)

Query: 70  TSFLRAARAGHLDKLRELLEA-------GVDINTSNASDPNTSFLRA---ARAGHLDKLR 119
            S   A    +  +L  LL           D    +     T  L+A      G  D + 
Sbjct: 15  RSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIA 74

Query: 120 ELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKV 179
            LL+     ++       L   +N    +    G  ALH+A +  + T+V  L++ G  V
Sbjct: 75  LLLDVARKTDS-------LKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADV 127

Query: 180 DASTKK--------------GNTALHIAA 194
            A+                 G   L +AA
Sbjct: 128 QAAANGDFFKKTKGRPGFYFGELPLSLAA 156

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 64.8 bits (158), Expect = 8e-13
 Identities = 27/133 (20%), Positives = 43/133 (32%), Gaps = 17/133 (12%)

Query: 76  ARAGHLDKLRELLEAGVDIN----------TSNASDPNTSFLRAARAGHLDKLRELLEAG 125
              G  D +  LL+     +          T +     T+   A    ++  +  L+E G
Sbjct: 65  LHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENG 124

Query: 126 VDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCK---VDAS 182
            D+  +       D       +     G   L LAA      +VK LL+   +   + A 
Sbjct: 125 ADVQAAA----NGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISAR 180

Query: 183 TKKGNTALHIAAL 195
              GNT LH    
Sbjct: 181 DSVGNTVLHALVE 193

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 63.3 bits (154), Expect = 3e-12
 Identities = 26/159 (16%), Positives = 44/159 (27%), Gaps = 31/159 (19%)

Query: 48  EAKIHNAVISLEPCYDCYSDPNTSFLRAARAGHLDKLRELLEAG---VDINTSNASDPNT 104
           +A  +            +         AA    L  ++ LL+      DI+  + S  NT
Sbjct: 128 QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARD-SVGNT 186

Query: 105 SFLRAARAGHLDK---------LRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLN 155
                                   E+L  G  ++ +    +  + +           GL 
Sbjct: 187 VLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRK-----------GLT 235

Query: 156 ALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
            L LAA  G   V+  +L+                H AA
Sbjct: 236 PLALAASSGKIGVLAYILQRE-------IHEPECRHAAA 267

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 53.6 bits (129), Expect = 7e-09
 Identities = 27/165 (16%), Positives = 47/165 (28%), Gaps = 44/165 (26%)

Query: 59  EPCYDCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSN------ASDPNTSFLR---- 108
               D Y    T+   A    ++  +  L+E G D+  +        +     F      
Sbjct: 92  ASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELP 151

Query: 109 ---AARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGH 165
              AA    L  ++ LL+                   +I  ++  + G   LH   +   
Sbjct: 152 LSLAACTNQLAIVKFLLQNSWQPA-------------DISARD--SVGNTVLHALVEVAD 196

Query: 166 TTV----------------VKALLKGGCKVDASTKKGNTALHIAA 194
            TV                   L       + + +KG T L +AA
Sbjct: 197 NTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAA 241

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 64.5 bits (157), Expect = 8e-13
 Identities = 39/132 (29%), Positives = 58/132 (43%), Gaps = 20/132 (15%)

Query: 67  DPNTSFLRAARAGHLDKLRE-LLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG 125
             N      A +G LD+L+E +L        ++  D  T+   A  AGH + +  LL+ G
Sbjct: 5   VSNIMICNLAYSGKLDELKERILADKSLATRTD-QDSRTALHWACSAGHTEIVEFLLQLG 63

Query: 126 VDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKK 185
           V +N  +                  + G + LH+AA  G   +VKALL  G  V+A  + 
Sbjct: 64  VPVNDKD------------------DAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQN 105

Query: 186 GNTALHIAALDS 197
           G T LH AA  +
Sbjct: 106 GCTPLHYAASKN 117

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 56.8 bits (137), Expect = 4e-10
 Identities = 28/129 (21%), Positives = 42/129 (32%), Gaps = 19/129 (14%)

Query: 66  SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG 125
            +  T    AA     +    LLE G + +  +     T+  RAA  G+L  +  LL   
Sbjct: 104 QNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD-HYDATAMHRAAAKGNLKMVHILLFYK 162

Query: 126 VDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKK 185
              N  +                    G   LHLA  +      K L+  G  +    K+
Sbjct: 163 ASTNIQD------------------TEGNTPLHLACDEERVEEAKFLVTQGASIYIENKE 204

Query: 186 GNTALHIAA 194
             T L +A 
Sbjct: 205 EKTPLQVAK 213

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 62.5 bits (151), Expect = 1e-11
 Identities = 34/178 (19%), Positives = 56/178 (31%), Gaps = 19/178 (10%)

Query: 17  KKEKEEERKEEEEEEEKNISAIGPAVTKLRQEAKIHNAVISLEPCYDCYSDPNTSFLRAA 76
            K  E   +       +    + P  +   +   + +                  F  + 
Sbjct: 149 TKLPEIRGRRGGRGRPRGQPPVPPKPSIRPRPGSLRSKPEPPSEDLGSLHPGALLFRASG 208

Query: 77  RAGHLDKLRELLEAGVDINTSNASDPNTSFL-RAARAGHLDKLRELLEAGVDINTSNATS 135
               L  + + L  G D+N  N    N + L +A  A  L     LL+ G ++N +++  
Sbjct: 209 HPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADS-- 266

Query: 136 KKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIA 193
                            G   LH A   GHT +    LK G  + A   +G   L IA
Sbjct: 267 ----------------AGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIA 308

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 58.6 bits (142), Expect = 1e-10
 Identities = 28/149 (18%), Positives = 47/149 (31%), Gaps = 31/149 (20%)

Query: 70  TSFLRAARAGHLDKLRELLE----AGVDINTSNASDPN---TSFLRAA---RAGHLDKLR 119
                    G  D L  LL         +      +P+   T   +A     AG  D + 
Sbjct: 7   PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIP 66

Query: 120 ELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKV 179
            LL+           +  +   +N   +++   G  ALH+A +      V+ L++ G  V
Sbjct: 67  ILLDIA-------EKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADV 119

Query: 180 DASTKK--------------GNTALHIAA 194
            A  +               G   L +AA
Sbjct: 120 HAQARGRFFQPKDEGGYFYFGELPLSLAA 148

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 57.9 bits (140), Expect = 2e-10
 Identities = 27/132 (20%), Positives = 41/132 (31%), Gaps = 17/132 (12%)

Query: 76  ARAGHLDKLRELLEAGVD-------INTSNASDPN---TSFLRAARAGHLDKLRELLEAG 125
             AG  D +  LL+           IN+          T+   A        +  L+E G
Sbjct: 57  LSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKG 116

Query: 126 VDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCK---VDAS 182
            D++       +        +      G   L LAA      +V  L + G K   +   
Sbjct: 117 ADVHAQA----RGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQ 172

Query: 183 TKKGNTALHIAA 194
             +GNT LH   
Sbjct: 173 DSRGNTVLHALV 184

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 47.9 bits (114), Expect = 7e-07
 Identities = 22/151 (14%), Positives = 41/151 (27%), Gaps = 24/151 (15%)

Query: 49  AKIHNAVISLEPCYDCYSDPNTSFLRAARAGHLDKLRELLEAG---VDINTSNASDPNTS 105
           A+        +     +         AA       +  L E G    D+   + S  NT 
Sbjct: 121 AQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQD-SRGNTV 179

Query: 106 FLRAARAGHLDK---------LRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNA 156
                      +            LL     +         L+N           +GL+ 
Sbjct: 180 LHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNN-----------DGLSP 228

Query: 157 LHLAAKDGHTTVVKALLKGGCKVDASTKKGN 187
           L +AAK G   + + +++      A+    +
Sbjct: 229 LMMAAKTGKIGIFQHIIRREIADAAAHHHHH 259

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 42.5 bits (100), Expect = 4e-05
 Identities = 27/165 (16%), Positives = 43/165 (26%), Gaps = 44/165 (26%)

Query: 59  EPCYDCYSDPNTSFLRAARAGHLDKLRELLEAGVDIN-------------TSNASDPNTS 105
            P  D Y    T+   A        +  L+E G D++                       
Sbjct: 84  SPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELP 143

Query: 106 FLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGH 165
              AA       +  L E G               Q ++ +++  + G   LH       
Sbjct: 144 LSLAACTNQPHIVHYLTENG-------------HKQADLRRQD--SRGNTVLHALVAIAD 188

Query: 166 ---------TTVVKALLKGGCKVDAST-------KKGNTALHIAA 194
                    T +   LL    K+   T         G + L +AA
Sbjct: 189 NTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAA 233

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 55.4 bits (133), Expect = 2e-09
 Identities = 26/144 (18%), Positives = 49/144 (34%), Gaps = 26/144 (18%)

Query: 59  EPCYDCYSDPNTSFLRAARAGHLDKLRELLEAGVD----INTSNASDPNTSFL----RAA 110
              +   +    S   A +   +  L +    GVD    I  +N  +P+ + L    R+ 
Sbjct: 121 RKKHADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSV 180

Query: 111 RAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVK 170
               L  +  L++   +++                       G  ALH      +   +K
Sbjct: 181 DRTSLHIVDFLVQNSGNLDKQTG------------------KGSTALHYCCLTDNAECLK 222

Query: 171 ALLKGGCKVDASTKKGNTALHIAA 194
            LL+G   ++ + + G T L IA 
Sbjct: 223 LLLRGKASIEIANESGETPLDIAK 246

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 40.7 bits (95), Expect = 1e-04
 Identities = 25/107 (23%), Positives = 38/107 (35%), Gaps = 15/107 (14%)

Query: 92  VDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKN 151
                ++ +    S   A +   +  L +    GVD+               I   N   
Sbjct: 120 ARKKHADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTE------------KIPLANGHE 167

Query: 152 NGLNALHLAAKDGHTT---VVKALLKGGCKVDASTKKGNTALHIAAL 195
               ALHLA +    T   +V  L++    +D  T KG+TALH   L
Sbjct: 168 PDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCL 214

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 55.0 bits (132), Expect = 3e-09
 Identities = 20/122 (16%), Positives = 41/122 (33%), Gaps = 7/122 (5%)

Query: 73  LRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSN 132
           + +   G     +  L+  +       + P  S      +   D            +   
Sbjct: 210 ITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPND-----KNGERKDSILE 264

Query: 133 ATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHI 192
               K      ++ ++  +NG   L++AA+ G+ ++V ALL  G     + K G   +  
Sbjct: 265 NLDLKWIIANMLNAQD--SNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDF 322

Query: 193 AA 194
            A
Sbjct: 323 GA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 55.0 bits (132), Expect = 3e-09
 Identities = 21/147 (14%), Positives = 44/147 (29%), Gaps = 23/147 (15%)

Query: 66  SDPNTSFLRAARAGHLDKLRELL-EAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEA 124
              N      +    L ++ +      +++N       NT         +L+ ++ L++ 
Sbjct: 94  GSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKH 153

Query: 125 GVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHT----TVVKALLKGGCKVD 180
           G +    +                  N G + L  A K  +     T    L      + 
Sbjct: 154 GSNRLYGD------------------NMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLI 195

Query: 181 ASTKKGNTALHIAALDSLVTDIASSAI 207
                  T LH   + S +T  +++A 
Sbjct: 196 LEDSMNRTILHHIIITSGMTGCSAAAK 222

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 53.5 bits (128), Expect = 1e-08
 Identities = 24/152 (15%), Positives = 44/152 (28%), Gaps = 18/152 (11%)

Query: 45  LRQEAKIHNAVISLEPCYDCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNT 104
           L    KI  A+ S     +       +FL+      + ++   L        S     N 
Sbjct: 39  LSSPLKIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQ 98

Query: 105 SFLRAARAGHLDKLRELL-EAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKD 163
                +    L ++ +      +++N        +D            +G   LH     
Sbjct: 99  QQQHVSFDSLLQEVNDAFPNTQLNLNI------PVDE-----------HGNTPLHWLTSI 141

Query: 164 GHTTVVKALLKGGCKVDASTKKGNTALHIAAL 195
            +  +VK L+K G         G + L  A  
Sbjct: 142 ANLELVKHLVKHGSNRLYGDNMGESCLVKAVK 173

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 53.8 bits (129), Expect = 8e-09
 Identities = 27/136 (19%), Positives = 40/136 (29%), Gaps = 26/136 (19%)

Query: 66  SDPNTSFLRAARAGHLDKLRELLEAGVDINTS-----NASDPNTSFLRAARAGHLDKL-- 118
           +        A     L  + E    G D           +        A +  +   L  
Sbjct: 149 TPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPL 208

Query: 119 -RELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGC 177
              +++ G  ++   A                  +G  ALH AA       +K LLKG  
Sbjct: 209 VDFIIQNGGHLDAKAA------------------DGNTALHYAALYNQPDCLKLLLKGRA 250

Query: 178 KVDASTKKGNTALHIA 193
            V    + G TAL IA
Sbjct: 251 LVGTVNEAGETALDIA 266

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 41.5 bits (97), Expect = 9e-05
 Identities = 23/102 (22%), Positives = 33/102 (32%), Gaps = 15/102 (14%)

Query: 97  SNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNA 156
              +        A     L  + E    G D                    + +      
Sbjct: 146 RRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPL------------PGPDAQAPEELV 193

Query: 157 LHLAAKDGHTT---VVKALLKGGCKVDASTKKGNTALHIAAL 195
           LHLA K  +     +V  +++ G  +DA    GNTALH AAL
Sbjct: 194 LHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAAL 235

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 47.6 bits (113), Expect = 1e-06
 Identities = 23/99 (23%), Positives = 34/99 (34%), Gaps = 15/99 (15%)

Query: 100 SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHL 159
           +        A     L  + E    G D                +   + +      LHL
Sbjct: 130 TPEPQRLWTAICNRDLLSVLEAFANGQDFGQP------------LPGPDAQAPEELVLHL 177

Query: 160 AAKDGHTT---VVKALLKGGCKVDASTKKGNTALHIAAL 195
           A K  +     +V  +++ G  +DA    GNTALH AAL
Sbjct: 178 AVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAAL 216

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 43.0 bits (101), Expect = 4e-05
 Identities = 30/136 (22%), Positives = 43/136 (31%), Gaps = 26/136 (19%)

Query: 66  SDPNTSFLRAARAGHLDKLRELLEAGVDIN----TSNASDPNTSFL----RAARAGHLDK 117
           +        A     L  + E    G D        +A  P    L    + A    L  
Sbjct: 130 TPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPL 189

Query: 118 LRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGC 177
           +  +++ G  ++   A                  +G  ALH AA       +K LLKG  
Sbjct: 190 VDFIIQNGGHLDAKAA------------------DGNTALHYAALYNQPDCLKLLLKGRA 231

Query: 178 KVDASTKKGNTALHIA 193
            V    + G TAL IA
Sbjct: 232 LVGTVNEAGETALDIA 247

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 8e-06
 Identities = 39/232 (16%), Positives = 83/232 (35%), Gaps = 48/232 (20%)

Query: 11  FGTMLEKKEKEEERKEEEEEEEKNISAIGPAVTKLRQEAKIHNAVISLEPCYDCYSDP-- 68
           F T+L K+E+  ++  EE     N   +   ++ ++ E +  + +  +   Y    D   
Sbjct: 68  FWTLLSKQEEMVQKFVEEVLR-INYKFL---MSPIKTEQRQPSMMTRM---YIEQRDRLY 120

Query: 69  --NTSF--LRAARAGHLDKLRELL-----EAGVDIN-------TSNASDPNTSFLRAARA 112
             N  F     +R     KLR+ L        V I+       T  A D          +
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALD-------VCLS 173

Query: 113 GHLDKLRELLEAGV---DINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVV 169
               K++  ++  +   ++   N+    L+    +  +   N    + H +        +
Sbjct: 174 ---YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230

Query: 170 KALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAITDATSLPCSVILRT 221
           +A L+   K    +K     L +  L     ++ ++   +A +L C ++L T
Sbjct: 231 QAELRRLLK----SKPYENCLLV--LL----NVQNAKAWNAFNLSCKILLTT 272

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 2e-04
 Identities = 22/165 (13%), Positives = 49/165 (29%), Gaps = 42/165 (25%)

Query: 21  EEERKEEEEEEEKNISA--IGPAVTKLRQEA-KIHNAVISL-------EPC-YDCYSDPN 69
           +        +E K++    +      L +E    +   +S+           +D +   N
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVN 351

Query: 70  TSFLRAARAGHLDKL-----RELLEA------GVDINTS------NASDPNTSFLRAARA 112
              L       L+ L     R++ +          I T            +   +     
Sbjct: 352 CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV---- 407

Query: 113 GHLDKL--RELLEAGVDINTSN------ATSKKLDNQLNIHQKNI 149
             ++KL    L+E     +T +          KL+N+  +H+  +
Sbjct: 408 --VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV 450

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 2e-04
 Identities = 41/221 (18%), Positives = 82/221 (37%), Gaps = 53/221 (23%)

Query: 16  EKKEKEEERKEEEEEEEK--NISAIGPA--VTKLRQEAKIHNAVISLEPCYDCYSDPNT- 70
           E+++     +   E+ ++  N + +     V++L+   K+  A++ L P        N  
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP------AKNVL 154

Query: 71  ---------SFLRAARAGHLDKLRELLEAGVD-INTSNASDPNTSFLRAARAGHLDKLRE 120
                    +++ A       K++  ++  +  +N  N + P T          L+ L++
Sbjct: 155 IDGVLGSGKTWV-ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV---------LEMLQK 204

Query: 121 LLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGL-------NALHLAAKD-GHTTVVKAL 172
           LL   +D N ++ +    + +L IH    +   L       N L L   +  +     A 
Sbjct: 205 LL-YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL-LVLLNVQNAKAWNA- 261

Query: 173 LKGGCKVDASTKKGNTALHIAALDSLVTDIASSAITDATSL 213
               CK+  +T+              VTD  S+A T   SL
Sbjct: 262 FNLSCKILLTTR-----------FKQVTDFLSAATTTHISL 291

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	225
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.97
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.96
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.96
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.96
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.96
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.95
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.95
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.95
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.95
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.95
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.95
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.95
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.95
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.95
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.95
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.95
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.95
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.95
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.94
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.94
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.94
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.94
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.94
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.94
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.94
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.94
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.94
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.94
2etb_A	256	Transient receptor potential cation channel subfam	99.94
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.94
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.94
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.94
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.93
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.93
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.93
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.93
2rfa_A	232	Transient receptor potential cation channel subfa	99.93
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.93
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.93
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.93
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.93
2rfa_A	232	Transient receptor potential cation channel subfa	99.93
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.93
2pnn_A	273	Transient receptor potential cation channel subfa	99.93
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.93
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.93
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.93
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.93
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.93
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.93
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.93
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.93
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.93
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.93
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.93
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.93
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.93
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.93
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.93
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.93
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.92
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.92
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.92
2etb_A	256	Transient receptor potential cation channel subfam	99.92
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.92
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.92
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.92
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.92
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.92
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.92
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.92
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.92
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.92
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.92
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.92
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.92
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.91
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.91
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.91
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.91
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.91
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.91
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.91
2pnn_A	273	Transient receptor potential cation channel subfa	99.91
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.91
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.91
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.9
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.9
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.9
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.9
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.9
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.89
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.89
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.88
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.88
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.87
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.87
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.87
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.86
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.85
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.85
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.85
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.84
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.83
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.83
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.83
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.83
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.83
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.82
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.8
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.8
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.79
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.79
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.75

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.97  E-value=1.6e-30  Score=194.19  Aligned_cols=132  Identities=31%  Similarity=0.474  Sum_probs=121.6

Q ss_pred             cccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHH
Q psy10604         62 YDCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQ  141 (225)
Q Consensus        62 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~  141 (225)
                      ...+..|.||||+|+..++.+++++|++.|++++.++ ..|+||||+|+..|+.+++++|++.|++++.++.        
T Consensus        31 n~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d-~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~--------  101 (169)
T 4gpm_A           31 NASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKD-SDGRTPLHHAAENGHKEVVKLLISKGADVNAKDS--------  101 (169)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT--------
T ss_pred             CCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhc-cCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCC--------
Confidence            3457889999999999999999999999999999998 8999999999999999999999999999999886        


Q ss_pred             hhhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHHhhcCCCC
Q psy10604        142 LNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAITDATSL  213 (225)
Q Consensus       142 ~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~~~~~~  213 (225)
                                .|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+. .++++|++.|+.+
T Consensus       102 ----------~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~-~iv~~Ll~~GA~i  162 (169)
T 4gpm_A          102 ----------DGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNE-EVVKLLEKQGGWL  162 (169)
T ss_dssp             ----------TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH-HHHHHHHTC----
T ss_pred             ----------CCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCH-HHHHHHHHCCCCc
Confidence                      999999999999999999999999999999999999999999999995 6778888887765

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.96  E-value=2.8e-28  Score=181.98  Aligned_cols=124  Identities=34%  Similarity=0.586  Sum_probs=115.9

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhhhhhhcc
Q psy10604         70 TSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNI  149 (225)
Q Consensus        70 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~  149 (225)
                      ++|+.||..|+.++|++|++.|++++.++ ..|.||||+|+..++.+++++|++.|++++.++.                
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d-~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~----------------   68 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADVNASD-SDGRTPLHHAAENGHKEVVKLLISKGADVNAKDS----------------   68 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----------------
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcC-CCCCCHHHHHHHcCCHHHHHHHHhcccchhhhcc----------------
Confidence            57999999999999999999999999999 8999999999999999999999999999999886                


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHHhhcCCCC
Q psy10604        150 KNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAITDATSL  213 (225)
Q Consensus       150 d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~~~~~~  213 (225)
                        .|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+. .++++|+..++.+
T Consensus        69 --~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~-~~v~~Ll~~gad~  129 (169)
T 4gpm_A           69 --DGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHK-EVVKLLISKGADV  129 (169)
T ss_dssp             --TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH-HHHHHHHHTTCCT
T ss_pred             --CCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCH-HHHHHHHHcCCCc
Confidence              999999999999999999999999999999999999999999999996 5666666666554

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.96  E-value=1.8e-28  Score=176.28  Aligned_cols=127  Identities=23%  Similarity=0.278  Sum_probs=118.1

Q ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhh
Q psy10604         64 CYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLN  143 (225)
Q Consensus        64 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~  143 (225)
                      .+..|.||||+|+..|+.+++++|++.|++++..+ ..|.||||+|+. |+.+++++|++.|++++.++.          
T Consensus         8 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~----------   75 (136)
T 1d9s_A            8 LGGSSDAGLATAAARGQVETVRQLLEAGADPNALN-RFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADP----------   75 (136)
T ss_dssp             CCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBT----------
T ss_pred             CCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcC-CCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCC----------
Confidence            46789999999999999999999999999999998 899999999999 999999999999999999886          


Q ss_pred             hhhhccCCC-CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHHhhcCC
Q psy10604        144 IHQKNIKNN-GLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAITDAT  211 (225)
Q Consensus       144 ~~~~~~d~~-g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~~~~  211 (225)
                              . |+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+. .++++|+..|+
T Consensus        76 --------~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~-~~~~~Ll~~Ga  135 (136)
T 1d9s_A           76 --------ATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHR-DIARYLHAATG  135 (136)
T ss_dssp             --------TTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCH-HHHHHHHHHHC
T ss_pred             --------CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCH-HHHHHHHHcCC
Confidence                    7 99999999999999999999999999999999999999999999996 55666665543

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.96  E-value=5.3e-28  Score=173.83  Aligned_cols=125  Identities=37%  Similarity=0.480  Sum_probs=116.8

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhhh
Q psy10604         65 YSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNI  144 (225)
Q Consensus        65 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~~  144 (225)
                      ...+.||||+|+..|+.+++++|++.|++++..+ ..|.||||+|+..|+.+++++|++.|++++.++.           
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~-----------   78 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMANGADVNAKD-EYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDA-----------   78 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT-----------
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcC-CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCC-----------
Confidence            5668999999999999999999999999999998 8999999999999999999999999999998886           


Q ss_pred             hhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHHhhc
Q psy10604        145 HQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAITD  209 (225)
Q Consensus       145 ~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~~  209 (225)
                             .|+||||+|+..++.+++++|+++|++++.+|..|.||||+|+..|+. .++++|+..
T Consensus        79 -------~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~-~~~~~Ll~~  135 (136)
T 2jab_A           79 -------IGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNE-DLAEILQKL  135 (136)
T ss_dssp             -------TCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH-HHHHHHHHC
T ss_pred             -------CCCCHHHHHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCH-HHHHHHHHc
Confidence                   899999999999999999999999999999999999999999999996 566666654

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.96  E-value=2.4e-27  Score=167.24  Aligned_cols=125  Identities=42%  Similarity=0.657  Sum_probs=117.2

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhhhhh
Q psy10604         67 DPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQ  146 (225)
Q Consensus        67 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~~~~  146 (225)
                      +|.||||+|+..|+.+++++|++.|++++..+ ..|.||||+|+..++.+++++|++.|++++.++.             
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~-------------   66 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKD-KNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK-------------   66 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCC-TTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT-------------
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcC-CCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCC-------------
Confidence            58999999999999999999999999999998 8999999999999999999999999999998885             


Q ss_pred             hccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHHhhcCC
Q psy10604        147 KNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAITDAT  211 (225)
Q Consensus       147 ~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~~~~  211 (225)
                           .|+||||+|+..++.+++++|+++|++++.+|..|.||||+|+..|+. .++++|+..|+
T Consensus        67 -----~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~-~~~~~Ll~~Ga  125 (126)
T 1n0r_A           67 -----NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL-EVVKLLLEAGA  125 (126)
T ss_dssp             -----TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH-HHHHHHHHHTC
T ss_pred             -----CCCcHHHHHHHcChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcH-HHHHHHHHcCC
Confidence                 899999999999999999999999999999999999999999999996 56666666654

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.95  E-value=5.4e-27  Score=171.69  Aligned_cols=123  Identities=29%  Similarity=0.352  Sum_probs=115.4

Q ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhh
Q psy10604         64 CYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLN  143 (225)
Q Consensus        64 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~  143 (225)
                      .+..|.||||+|+..|+.+++++|++.|++++..+ ..|.||||+|+..|+.+++++|++.|++++.++.          
T Consensus        30 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~----------   98 (153)
T 1awc_B           30 TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDART-KVDRTPLHMAASEGHANIVEVLLKHGADVNAKDM----------   98 (153)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCC-TTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCT----------
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCC----------
Confidence            46789999999999999999999999999999998 8999999999999999999999999999998886          


Q ss_pred             hhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHH
Q psy10604        144 IHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSA  206 (225)
Q Consensus       144 ~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l  206 (225)
                              .|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+. .++++|
T Consensus        99 --------~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~-~i~~~L  152 (153)
T 1awc_B           99 --------LKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNE-DLAEIL  152 (153)
T ss_dssp             --------TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH-HHHHHH
T ss_pred             --------CCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCH-HHHHHh
Confidence                    899999999999999999999999999999999999999999999996 455544

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.95  E-value=1.3e-26  Score=172.46  Aligned_cols=127  Identities=35%  Similarity=0.428  Sum_probs=114.8

Q ss_pred             ccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHh
Q psy10604         63 DCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQL  142 (225)
Q Consensus        63 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~  142 (225)
                      ..+..|.||||+|+..|+.+++++|++.|++++..+ ..|.||||+|+..|+.+++++|++.|++++.++.         
T Consensus        42 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~---------  111 (169)
T 2y1l_E           42 AEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVD-HAGMTPLRLAALFGHLEIVEVLLKNGADVNANDM---------  111 (169)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT---------
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccC-CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCC---------
Confidence            346788999999999999999999999999999988 8899999999999999999999999999988875         


Q ss_pred             hhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHHhhc
Q psy10604        143 NIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAITD  209 (225)
Q Consensus       143 ~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~~  209 (225)
                               .|+||||+|+..++.+++++|+++|++++.+|..|.||||+|+..|+. .++++|++.
T Consensus       112 ---------~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~-~~~~~L~~~  168 (169)
T 2y1l_E          112 ---------EGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNE-DLAEILQKL  168 (169)
T ss_dssp             ---------TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH-HHHHHHHTC
T ss_pred             ---------CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCH-HHHHHHHHc
Confidence                     899999999999999999999999999999999999999999999995 566666654

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.95  E-value=5e-27  Score=174.94  Aligned_cols=128  Identities=25%  Similarity=0.301  Sum_probs=119.1

Q ss_pred             ccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHh
Q psy10604         63 DCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQL  142 (225)
Q Consensus        63 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~  142 (225)
                      ..+..|.||||+|+..|+.+++++|++.|++++..+ ..|.||||+|+..|+.+++++|++.|++++.++.         
T Consensus        31 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~---------  100 (172)
T 3v30_A           31 KPDERGFTPLIWASAFGEIETVRFLLEWGADPHILA-KERESALSLASTGGYTDIVGLLLERDVDINIYDW---------  100 (172)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCC-TTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCT---------
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhc-ccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCC---------
Confidence            346789999999999999999999999999999998 8999999999999999999999999999998886         


Q ss_pred             hhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHHhhcC
Q psy10604        143 NIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAITDA  210 (225)
Q Consensus       143 ~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~~~  210 (225)
                               .|+||||+|+..++.+++++|+++|++++.+|..|.||||+|+..|+. .++++|+..+
T Consensus       101 ---------~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~-~~~~~L~~~~  158 (172)
T 3v30_A          101 ---------NGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYR-KVQQVIENHI  158 (172)
T ss_dssp             ---------TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH-HHHHHHHHHH
T ss_pred             ---------CCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcH-HHHHHHHHHH
Confidence                     899999999999999999999999999999999999999999999996 5666665544

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.95  E-value=7.5e-27  Score=177.09  Aligned_cols=125  Identities=25%  Similarity=0.289  Sum_probs=99.5

Q ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhh
Q psy10604         64 CYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLN  143 (225)
Q Consensus        64 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~  143 (225)
                      .+..|.||||+|+..|+.+++++|++.|++++..+ ..|.||||+|+..|+.+++++|++.|++++.++.          
T Consensus        64 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~----------  132 (192)
T 2rfm_A           64 KDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKD-FSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNL----------  132 (192)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCC-TTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCT----------
T ss_pred             ccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCC----------
Confidence            45667788888888888888888888888887777 6788888888888888888888888888777764          


Q ss_pred             hhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHHhh
Q psy10604        144 IHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAIT  208 (225)
Q Consensus       144 ~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~  208 (225)
                              .|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+. .++++|+.
T Consensus       133 --------~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~-~~v~~Ll~  188 (192)
T 2rfm_A          133 --------EGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQ-EVIKIFTE  188 (192)
T ss_dssp             --------TCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCH-HHHHHHHH
T ss_pred             --------CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcH-HHHHHHHh
Confidence                    788888888888888888888888888888888888888888888885 45555544

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.95  E-value=9.3e-28  Score=176.49  Aligned_cols=130  Identities=23%  Similarity=0.272  Sum_probs=117.5

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhhh
Q psy10604         65 YSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNI  144 (225)
Q Consensus        65 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~~  144 (225)
                      +..|.||||+|+..|+.+++++|++.|++++..+ ..|.||||+|+ .|+.+++++|++.|++++.++.           
T Consensus         9 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~-----------   75 (156)
T 1bi7_B            9 MEPSADWLATAAARGRVEEVRALLEAGANPNAPN-SYGRRPIQVMM-MGSARVAELLLLHGAEPNCADP-----------   75 (156)
T ss_dssp             -CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCC-SSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCT-----------
T ss_pred             CccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCC-----------
Confidence            5778999999999999999999999999999998 89999999996 9999999999999999999886           


Q ss_pred             hhhccCCCCCc-HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHHhhcCCCCch
Q psy10604        145 HQKNIKNNGLN-ALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAITDATSLPC  215 (225)
Q Consensus       145 ~~~~~d~~g~t-~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~~~~~~~~  215 (225)
                             .|+| |||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+. .++++|+..|+..+.
T Consensus        76 -------~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~-~~v~~Ll~~ga~~~~  139 (156)
T 1bi7_B           76 -------ATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHR-DVARYLRAAAGGTRG  139 (156)
T ss_dssp             -------TTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCH-HHHHHHSSCC-----
T ss_pred             -------CCCcHHHHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHH-HHHHHHHHcCCCCCc
Confidence                   8998 99999999999999999999999999999999999999999995 677778877776644

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.95  E-value=3.2e-27  Score=174.87  Aligned_cols=130  Identities=25%  Similarity=0.328  Sum_probs=118.7

Q ss_pred             CcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHH
Q psy10604         61 CYDCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDN  140 (225)
Q Consensus        61 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~  140 (225)
                      ....+..|.||||+|+..|+.+++++|++.|++++..+ ..|.||||+|+..|+.+++++|++.|++++.++.       
T Consensus        35 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-------  106 (165)
T 3twr_A           35 CRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKD-KGGLVPLHNACSYGHYEVAELLVKHGAVVNVADL-------  106 (165)
T ss_dssp             CCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-------
T ss_pred             ccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccC-CCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCC-------
Confidence            33456778899999999999999999999999999998 8999999999999999999999999999999886       


Q ss_pred             HhhhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHHhhcCC
Q psy10604        141 QLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAITDAT  211 (225)
Q Consensus       141 ~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~~~~  211 (225)
                                 .|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+. |+. .++++|+..|+
T Consensus       107 -----------~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~-~i~~~L~~~gA  164 (165)
T 3twr_A          107 -----------WKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDT-DIQDLLRGDAA  164 (165)
T ss_dssp             -----------TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCH-HHHHHHHTC--
T ss_pred             -----------CCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CCh-HHHHHHhhccc
Confidence                       89999999999999999999999999999999999999999877 775 78888877664

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.95  E-value=5.7e-27  Score=172.76  Aligned_cols=129  Identities=31%  Similarity=0.359  Sum_probs=118.3

Q ss_pred             cccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHH
Q psy10604         62 YDCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQ  141 (225)
Q Consensus        62 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~  141 (225)
                      ...+..|.||||+|+. |+.+++++|++.|++++..+ ..|.||||+|+..|+.+++++|++.|++++.++.        
T Consensus        32 ~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~--------  101 (162)
T 1ihb_A           32 NAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKD-RTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDN--------  101 (162)
T ss_dssp             TCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT--------
T ss_pred             cccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCC-CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC--------
Confidence            3356789999999999 99999999999999999998 8999999999999999999999999999998886        


Q ss_pred             hhhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCChHHHHHHHcCChHHHHHHHhhcCC
Q psy10604        142 LNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCK-VDASTKKGNTALHIAALDSLVTDIASSAITDAT  211 (225)
Q Consensus       142 ~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~-~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~~~~  211 (225)
                                .|+||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+. .++++|+..|+
T Consensus       102 ----------~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~-~~~~~Ll~~GA  161 (162)
T 1ihb_A          102 ----------EGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRN-EVVSLMQANGA  161 (162)
T ss_dssp             ----------TSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCH-HHHHHHHHTC-
T ss_pred             ----------CCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCH-HHHHHHHHhCC
Confidence                      899999999999999999999999998 599999999999999999995 67777777665

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.95  E-value=6.1e-27  Score=187.21  Aligned_cols=131  Identities=28%  Similarity=0.404  Sum_probs=114.5

Q ss_pred             ccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHh
Q psy10604         63 DCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQL  142 (225)
Q Consensus        63 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~  142 (225)
                      ..+.+|.||||+|+..|+.+++++|++.|++++..+ ..|.||+|+|+..++.+++++|++.|++++.++.         
T Consensus        81 ~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~-~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~---------  150 (269)
T 4b93_B           81 VTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARN-ADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDL---------  150 (269)
T ss_dssp             CCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCC-TTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCT---------
T ss_pred             CcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccC-CCCCCccccccccChHHHHHHHHHCCCCCCCCCC---------
Confidence            357889999999999999999999999999999988 8899999999999999999999999999998886         


Q ss_pred             hhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHHhhcCCCC
Q psy10604        143 NIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAITDATSL  213 (225)
Q Consensus       143 ~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~~~~~~  213 (225)
                               .|+||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+. .++++|+..|+.+
T Consensus       151 ---------~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~-~~v~~Ll~~Gad~  211 (269)
T 4b93_B          151 ---------SGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHV-FVVELLLLHGASV  211 (269)
T ss_dssp             ---------TCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCH-HHHHHHHHTTCCS
T ss_pred             ---------CCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCH-HHHHHHHHCCCCC
Confidence                     888888888888888888888888888888888888888888888885 4556666666554

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.95  E-value=5.2e-27  Score=176.16  Aligned_cols=133  Identities=26%  Similarity=0.269  Sum_probs=123.7

Q ss_pred             cccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHH
Q psy10604         62 YDCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQ  141 (225)
Q Consensus        62 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~  141 (225)
                      ...+..|.||||+|+..|+.+++++|++.|++++..+ ..|.||||+|+..|+.+++++|++.|++++.++.        
T Consensus        33 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~--------  103 (179)
T 3f6q_A           33 NQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMN-RGDDTPLHLAASHGHRDIVQKLLQYKADINAVNE--------  103 (179)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT--------
T ss_pred             cccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcC-CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCC--------
Confidence            3457789999999999999999999999999999998 8999999999999999999999999999999886        


Q ss_pred             hhhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHHhhcCCCCc
Q psy10604        142 LNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAITDATSLP  214 (225)
Q Consensus       142 ~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~~~~~~~  214 (225)
                                .|+||||+|+..++.+++++|+++|++++.+|..|.|||++|+..++ ..++++|++.++.++
T Consensus       104 ----------~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~-~~~~~~L~~~g~~~~  165 (179)
T 3f6q_A          104 ----------HGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLR-ELLRERAEKMGQNLN  165 (179)
T ss_dssp             ----------TSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHH-HHHHHHHHHTTCCCS
T ss_pred             ----------CCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHH-HHHHHHHHHhhcCcc
Confidence                      99999999999999999999999999999999999999999999888 577788888777664

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.95  E-value=5.3e-27  Score=177.93  Aligned_cols=130  Identities=20%  Similarity=0.257  Sum_probs=120.6

Q ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhh
Q psy10604         64 CYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLN  143 (225)
Q Consensus        64 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~  143 (225)
                      .+..|.||||+|+..|+.+++++|++.|++++..+ ..|.||||+|+..|+.+++++|++.|++++.++.          
T Consensus        31 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~----------   99 (192)
T 2rfm_A           31 RDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKD-IEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDF----------   99 (192)
T ss_dssp             CCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCC-TTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCT----------
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHhcccccccc-ccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCC----------
Confidence            36789999999999999999999999999999998 8899999999999999999999999999998885          


Q ss_pred             hhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHHhhcCCCC
Q psy10604        144 IHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAITDATSL  213 (225)
Q Consensus       144 ~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~~~~~~  213 (225)
                              .|+||||+|+..++.+++++|+++|++++.+|..|.||||+|+..|+. .++++|+..++.+
T Consensus       100 --------~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~-~~v~~Ll~~ga~~  160 (192)
T 2rfm_A          100 --------SGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRS-EIVKKLLELGADI  160 (192)
T ss_dssp             --------TSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCH-HHHHHHHHTTCCT
T ss_pred             --------CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCH-HHHHHHHHCCCCC
Confidence                    899999999999999999999999999999999999999999999996 5666666666554

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.95  E-value=1.4e-26  Score=171.73  Aligned_cols=128  Identities=23%  Similarity=0.310  Sum_probs=117.4

Q ss_pred             cccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHH
Q psy10604         62 YDCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQ  141 (225)
Q Consensus        62 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~  141 (225)
                      ...+..|.||||+|+..|+.+++++|++.|++++..+ ..|.||||+|+..|+.+++++|++.|++++.++.        
T Consensus        30 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~--------  100 (167)
T 3v31_A           30 NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG-KGRESALSLACSKGYTDIVKMLLDCGVDVNEYDW--------  100 (167)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCT--------
T ss_pred             CCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcC-CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCC--------
Confidence            3356789999999999999999999999999999998 8999999999999999999999999999998885        


Q ss_pred             hhhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHHhhc
Q psy10604        142 LNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAITD  209 (225)
Q Consensus       142 ~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~~  209 (225)
                                .|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+. .++++|+..
T Consensus       101 ----------~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~-~~~~~L~~~  157 (167)
T 3v31_A          101 ----------NGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYR-SVQQVIESH  157 (167)
T ss_dssp             ----------TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH-HHHHHHHHH
T ss_pred             ----------CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcH-HHHHHHHHH
Confidence                      899999999999999999999999999999999999999999999996 566666553

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.95  E-value=8.9e-28  Score=172.70  Aligned_cols=126  Identities=25%  Similarity=0.278  Sum_probs=114.8

Q ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhh
Q psy10604         64 CYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLN  143 (225)
Q Consensus        64 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~  143 (225)
                      .+..|.||||+|+..|+.+++++|++.|++++..+ ..|.||||+|+..|+.+++++|++.|++++.++.          
T Consensus         6 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~----------   74 (137)
T 3c5r_A            6 TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKD-HAGWTPLHEACNHGHLKVVELLLQHKALVNTTGY----------   74 (137)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCC-TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCG----------
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCC-CCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCC----------
Confidence            46789999999999999999999999999999998 8999999999999999999999999999999886          


Q ss_pred             hhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHHhhc
Q psy10604        144 IHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAITD  209 (225)
Q Consensus       144 ~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~~  209 (225)
                              .|+||||+|+..++.+++++|+++|++++.+|..|.||||+|+..+.. .+..++.++
T Consensus        75 --------~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~-~~l~~l~~~  131 (137)
T 3c5r_A           75 --------QNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMK-SLLLLPEKN  131 (137)
T ss_dssp             --------GGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHH-HHHSCC---
T ss_pred             --------CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHH-HHHhhcccc
Confidence                    899999999999999999999999999999999999999999987763 455555444

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.95  E-value=1.5e-26  Score=171.58  Aligned_cols=127  Identities=25%  Similarity=0.271  Sum_probs=117.9

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhhhhh
Q psy10604         67 DPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQ  146 (225)
Q Consensus        67 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~~~~  146 (225)
                      .|.||||.|+..|+.+++++|++.|.+++..+ ..|.||||+|+..|+.+++++|++.|++++..+.             
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-------------   67 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTD-EEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGK-------------   67 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCC-TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-------------
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCC-CCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCC-------------
Confidence            57899999999999999999999999999998 8999999999999999999999999999998885             


Q ss_pred             hccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHHhhcCCCC
Q psy10604        147 KNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAITDATSL  213 (225)
Q Consensus       147 ~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~~~~~~  213 (225)
                           .|.||||+|+..++.+++++|+++|++++.+|..|.||||+|+..|+. .++++|+..+...
T Consensus        68 -----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~-~~v~~Ll~~g~~~  128 (167)
T 3v31_A           68 -----GRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHV-KCVKMLLESGADP  128 (167)
T ss_dssp             -----TCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCH-HHHHHHHHTTCCT
T ss_pred             -----CCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCH-HHHHHHHHcCCCC
Confidence                 899999999999999999999999999999999999999999999996 5666666655544

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.94  E-value=4.1e-26  Score=169.74  Aligned_cols=129  Identities=36%  Similarity=0.538  Sum_probs=118.3

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhhh
Q psy10604         65 YSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNI  144 (225)
Q Consensus        65 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~~  144 (225)
                      ...+.++|++|+..|+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|++.|++++..+.           
T Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-----------   78 (169)
T 2y1l_E           11 GSDLGKKLLEAARAGRDDEVRILMANGADVNAED-ASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDH-----------   78 (169)
T ss_dssp             --CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-----------
T ss_pred             CCcccchHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCC-----------
Confidence            4567899999999999999999999999999998 8999999999999999999999999999998885           


Q ss_pred             hhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHHhhcCCCC
Q psy10604        145 HQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAITDATSL  213 (225)
Q Consensus       145 ~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~~~~~~  213 (225)
                             .|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+. .++++|+..+..+
T Consensus        79 -------~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~-~~v~~Ll~~g~~~  139 (169)
T 2y1l_E           79 -------AGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHL-EIVEVLLKNGADV  139 (169)
T ss_dssp             -------TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH-HHHHHHHHTTCCT
T ss_pred             -------CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCH-HHHHHHHHcCCCC
Confidence                   899999999999999999999999999999999999999999999996 5666666666544

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.94  E-value=8.1e-27  Score=164.68  Aligned_cols=112  Identities=29%  Similarity=0.401  Sum_probs=105.3

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhhh
Q psy10604         65 YSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNI  144 (225)
Q Consensus        65 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~~  144 (225)
                      +..|.||||+|+..|+.+++++|++.|++++..+ ..|.||||+|+..|+.+++++|++.|++++.++.           
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~-----------   71 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTL-EGGRKPLHYAADCGQLEILEFLLLKGADINAPDK-----------   71 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCC-TTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCT-----------
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccC-CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCC-----------
Confidence            4568899999999999999999999999999998 8999999999999999999999999999999886           


Q ss_pred             hhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHH
Q psy10604        145 HQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAAL  195 (225)
Q Consensus       145 ~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~  195 (225)
                             .|+||||+|+..++.+++++|+++|++++.+|..|.||||+|..
T Consensus        72 -------~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~  115 (123)
T 3aaa_C           72 -------HHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDN  115 (123)
T ss_dssp             -------TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCC
T ss_pred             -------CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCC
Confidence                   99999999999999999999999999999999999999999954

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.94  E-value=8.2e-26  Score=182.26  Aligned_cols=149  Identities=23%  Similarity=0.261  Sum_probs=125.5

Q ss_pred             ccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHH-
Q psy10604         63 DCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQ-  141 (225)
Q Consensus        63 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~-  141 (225)
                      ..+..|.||||+|+..|+.+++++|++.|++++..+ ..|.||||+|+..|+.+++++|++.|++++..+..+...+.+ 
T Consensus        68 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~-~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A  146 (299)
T 1s70_B           68 YANVDGLTALHQACIDDNVDMVKFLVENGANINQPD-NEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIA  146 (299)
T ss_dssp             CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHC
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHH
Confidence            356789999999999999999999999999999998 899999999999999999999999999998877633221111 


Q ss_pred             -----------hh-hhh-----------------------------hccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCC
Q psy10604        142 -----------LN-IHQ-----------------------------KNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVD  180 (225)
Q Consensus       142 -----------~~-~~~-----------------------------~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~  180 (225)
                                 +. ..+                             ...+..|.||||+|+..|+.+++++|+++|++++
T Consensus       147 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~  226 (299)
T 1s70_B          147 EEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVN  226 (299)
T ss_dssp             CSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT
T ss_pred             HhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCC
Confidence                       10 000                             1134679999999999999999999999999999


Q ss_pred             CCCCCCChHHHHHHHcCChHHHHHHHhhcCCCC
Q psy10604        181 ASTKKGNTALHIAALDSLVTDIASSAITDATSL  213 (225)
Q Consensus       181 ~~d~~g~tpL~~A~~~~~~~~i~~~l~~~~~~~  213 (225)
                      .+|..|.||||+|+..|+. .++++|+..|+.+
T Consensus       227 ~~d~~g~tpL~~A~~~~~~-~~v~~Ll~~gad~  258 (299)
T 1s70_B          227 IKDYDGWTPLHAAAHWGKE-EACRILVENLCDM  258 (299)
T ss_dssp             CCCTTCCCHHHHHHHTTCH-HHHHHHHHTTCCT
T ss_pred             CcCCCCCcHHHHHHhcCCH-HHHHHHHHcCCCC
Confidence            9999999999999999996 5667777766654

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.94  E-value=6.5e-26  Score=165.90  Aligned_cols=125  Identities=30%  Similarity=0.409  Sum_probs=114.8

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhhhhhh
Q psy10604         68 PNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQK  147 (225)
Q Consensus        68 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~  147 (225)
                      ..++||.|+..|+.+++++|++.|.+++ .+ ..|.||||+|+..|+.+++++|++.|++++.++.              
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~--------------   65 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPFT-TD-WLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTK--------------   65 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCCC-CC-TTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCT--------------
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCCC-cC-CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--------------
Confidence            5689999999999999999999999886 34 7899999999999999999999999999998885              


Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHHhhcCCCC
Q psy10604        148 NIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAITDATSL  213 (225)
Q Consensus       148 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~~~~~~  213 (225)
                          .|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+. .++++|+..|..+
T Consensus        66 ----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~-~~v~~Ll~~ga~~  126 (153)
T 1awc_B           66 ----VDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQ-EVVELLIKYGADV  126 (153)
T ss_dssp             ----TCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCH-HHHHHHHHTTCCT
T ss_pred             ----CCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCH-HHHHHHHHcCCCc
Confidence                899999999999999999999999999999999999999999999996 5666777666554

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.94  E-value=6.2e-26  Score=166.29  Aligned_cols=125  Identities=27%  Similarity=0.351  Sum_probs=115.7

Q ss_pred             cccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHH
Q psy10604         62 YDCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQ  141 (225)
Q Consensus        62 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~  141 (225)
                      ...+..|.||||+ +..|+.+++++|++.|++++..+ ..|.||||+|+..|+.+++++|++.|++++.++.        
T Consensus        30 ~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~--------   99 (156)
T 1bd8_A           30 DALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQD-TSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDG--------   99 (156)
T ss_dssp             TCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCT--------
T ss_pred             cccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcC-CCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCC--------
Confidence            3456789999999 99999999999999999999998 8999999999999999999999999999999886        


Q ss_pred             hhhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHHhh
Q psy10604        142 LNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAIT  208 (225)
Q Consensus       142 ~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~  208 (225)
                                .|+||||+|+..|+.+++++|+++ ++++.+|..|.||||+|+..|+. .++++|++
T Consensus       100 ----------~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~-~~v~~Ll~  154 (156)
T 1bd8_A          100 ----------TGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQ-DLVDILQG  154 (156)
T ss_dssp             ----------TSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCH-HHHHHHHT
T ss_pred             ----------CCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcH-HHHHHHHh
Confidence                      899999999999999999999999 99999999999999999999996 55666554

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.94  E-value=1.6e-25  Score=178.71  Aligned_cols=150  Identities=21%  Similarity=0.184  Sum_probs=115.0

Q ss_pred             ccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC--------------
Q psy10604         63 DCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDI--------------  128 (225)
Q Consensus        63 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~--------------  128 (225)
                      ..+..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|++.|++.              
T Consensus        40 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~-~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~  118 (282)
T 1oy3_D           40 LQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAE-RGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQD  118 (282)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCC-TTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC----------
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccc
Confidence            346789999999999999999999999999999888 78999999999999999999999887652              


Q ss_pred             ---------------------------------CCCCcch------------hhHHHHhhhhhhcc---C-CCCCcHHHH
Q psy10604        129 ---------------------------------NTSNATS------------KKLDNQLNIHQKNI---K-NNGLNALHL  159 (225)
Q Consensus       129 ---------------------------------~~~~~~~------------~~~~~~~~~~~~~~---d-~~g~t~L~~  159 (225)
                                                       +.++..+            .....++...+..+   + ..|+||||+
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~  198 (282)
T 1oy3_D          119 CTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHL  198 (282)
T ss_dssp             -------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHH
T ss_pred             cCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHH
Confidence                                             2222211            12334444444433   2 238888888


Q ss_pred             HHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHHhhcCCCCc
Q psy10604        160 AAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAITDATSLP  214 (225)
Q Consensus       160 A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~~~~~~~  214 (225)
                      |+..|+.+++++|+++|++++.+|..|+||||+|+..|+. .++++|+..|+.++
T Consensus       199 A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~-~~v~~Ll~~ga~~~  252 (282)
T 1oy3_D          199 AVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNP-ILARLLRAHGAPEP  252 (282)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCH-HHHHHHHHTTCCCC
T ss_pred             HHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCc-HHHHHHHHcCCCcC
Confidence            8888888888888888888888888888888888888885 56666666666553

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.94  E-value=9e-26  Score=180.16  Aligned_cols=149  Identities=19%  Similarity=0.203  Sum_probs=125.4

Q ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHHcCCC---CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhh---
Q psy10604         64 CYSDPNTSFLRAARAGHLDKLRELLEAGVD---INTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKK---  137 (225)
Q Consensus        64 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~---  137 (225)
                      .+.+|.||||+|+..|+.+++++|++.|++   ++..+ ..|.||||+|+..|+.+++++|++.|++++.++..+..   
T Consensus         5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~   83 (282)
T 1oy3_D            5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQN-DLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALH   83 (282)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCC-TTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHH
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccC-CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHH
Confidence            468899999999999999999999999998   77787 89999999999999999999999999999988753322   


Q ss_pred             ---------HHHHhhhh--------------------------------------------------hhccCCCCCcHHH
Q psy10604        138 ---------LDNQLNIH--------------------------------------------------QKNIKNNGLNALH  158 (225)
Q Consensus       138 ---------~~~~~~~~--------------------------------------------------~~~~d~~g~t~L~  158 (225)
                               ...++...                                                  ....+..|+||||
T Consensus        84 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~  163 (282)
T 1oy3_D           84 LACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLH  163 (282)
T ss_dssp             HHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHH
T ss_pred             HHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHH
Confidence                     22222221                                                  2335678999999


Q ss_pred             HHHHcCCHHHHHHHHHCCCCCCCCCCC-CChHHHHHHHcCChHHHHHHHhhcCCCCc
Q psy10604        159 LAAKDGHTTVVKALLKGGCKVDASTKK-GNTALHIAALDSLVTDIASSAITDATSLP  214 (225)
Q Consensus       159 ~A~~~~~~~~~~~Ll~~ga~~~~~d~~-g~tpL~~A~~~~~~~~i~~~l~~~~~~~~  214 (225)
                      +|+..|+.+++++|+++|++++.++.. |+||||+|+..|+. .++++|+..|+.++
T Consensus       164 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~-~~v~~Ll~~gad~~  219 (282)
T 1oy3_D          164 VAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAA-SVLELLLKAGADPT  219 (282)
T ss_dssp             HHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCH-HHHHHHHHTTCCTT
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCH-HHHHHHHHcCCCCc
Confidence            999999999999999999999999865 99999999999996 56667776666553

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.94  E-value=2e-25  Score=176.38  Aligned_cols=148  Identities=22%  Similarity=0.249  Sum_probs=124.1

Q ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC-CCCCCCcchh------
Q psy10604         64 CYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGV-DINTSNATSK------  136 (225)
Q Consensus        64 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~-~~~~~~~~~~------  136 (225)
                      .+..|.||||+|+..|+.+++++|++.|++++..+ ..|.||||+|+..|+.+++++|++.|+ +++..+..+.      
T Consensus        53 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A  131 (253)
T 1yyh_A           53 TDRTGETALHLAARYSRSDAAKRLLEASADANIQD-NMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILA  131 (253)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHH
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHH
Confidence            36789999999999999999999999999999998 889999999999999999999999987 7777665332      


Q ss_pred             ------hHHHHhhhhh---hccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHHh
Q psy10604        137 ------KLDNQLNIHQ---KNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAI  207 (225)
Q Consensus       137 ------~~~~~~~~~~---~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~  207 (225)
                            ....++...+   +..|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+. .++++|+
T Consensus       132 ~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~-~~v~~Ll  210 (253)
T 1yyh_A          132 ARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSY-ETAKVLL  210 (253)
T ss_dssp             HHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH-HHHHHHH
T ss_pred             HHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCH-HHHHHHH
Confidence                  2334444433   33467899999999999999999999999999999999999999999999996 5666666


Q ss_pred             hcCCCC
Q psy10604        208 TDATSL  213 (225)
Q Consensus       208 ~~~~~~  213 (225)
                      ..|+..
T Consensus       211 ~~ga~~  216 (253)
T 1yyh_A          211 DHFANR  216 (253)
T ss_dssp             HTTCCT
T ss_pred             HcCCCc
Confidence            666554

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.94  E-value=1.1e-26  Score=185.83  Aligned_cols=126  Identities=29%  Similarity=0.384  Sum_probs=115.0

Q ss_pred             ccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHh
Q psy10604         63 DCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQL  142 (225)
Q Consensus        63 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~  142 (225)
                      ..+.+|.||+|+|+..++.+++++|++.|++++..+ ..|.||||+|+..|+.+++++|++.|++++.++.         
T Consensus       114 ~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d-~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~---------  183 (269)
T 4b93_B          114 ARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKD-LSGNTPLIYACSGGHHELVALLLQHGASINASNN---------  183 (269)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCC-TTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCT---------
T ss_pred             ccCCCCCCccccccccChHHHHHHHHHCCCCCCCCC-CCCCCHHHHHHHCCCHHHHHHHHHCCCCCCcccc---------
Confidence            357789999999999999999999999999999998 8999999999999999999999999999999886         


Q ss_pred             hhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHHh
Q psy10604        143 NIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAI  207 (225)
Q Consensus       143 ~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~  207 (225)
                               .|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.++++-.+.+.+.
T Consensus       184 ---------~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~~i~~lL~~l~  239 (269)
T 4b93_B          184 ---------KGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSKIMELLQVVP  239 (269)
T ss_dssp             ---------TSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTCHHHHHTTC--
T ss_pred             ---------CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCCcHHHHHHHHH
Confidence                     99999999999999999999999999999999999999999998876433333333

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.94  E-value=3.5e-25  Score=172.18  Aligned_cols=147  Identities=27%  Similarity=0.316  Sum_probs=100.9

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchh--------
Q psy10604         65 YSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSK--------  136 (225)
Q Consensus        65 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~--------  136 (225)
                      +..|.||||+|+..|+.+++++|++.|++++..+ ..|.||||+|+..|+.+++++|++.|++++.++..+.        
T Consensus        37 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~  115 (231)
T 3aji_A           37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKD-DAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAAS  115 (231)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCC-TTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcC-CCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence            4556666666666666666666666666666665 5566666666666666666666666666655543221        


Q ss_pred             ----hHHHHhhhhhh---ccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHHhhc
Q psy10604        137 ----KLDNQLNIHQK---NIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAITD  209 (225)
Q Consensus       137 ----~~~~~~~~~~~---~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~~  209 (225)
                          ....++...+.   ..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+. .++++|+..
T Consensus       116 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~-~~v~~Ll~~  194 (231)
T 3aji_A          116 KNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERV-EEAKFLVTQ  194 (231)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCH-HHHHHHHHT
T ss_pred             cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCH-HHHHHHHHC
Confidence                12222322222   2345899999999999999999999999999999999999999999999996 566666666


Q ss_pred             CCCC
Q psy10604        210 ATSL  213 (225)
Q Consensus       210 ~~~~  213 (225)
                      |+.+
T Consensus       195 ga~~  198 (231)
T 3aji_A          195 GASI  198 (231)
T ss_dssp             TCCS
T ss_pred             CCCC
Confidence            6554

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.94  E-value=3.5e-26  Score=180.81  Aligned_cols=127  Identities=20%  Similarity=0.298  Sum_probs=116.3

Q ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC-------------CCCHHHHHHHcCCHHHHHHHHH---CCCC
Q psy10604         64 CYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASD-------------PNTSFLRAARAGHLDKLRELLE---AGVD  127 (225)
Q Consensus        64 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~-------------g~t~Lh~A~~~~~~~iv~~Ll~---~g~~  127 (225)
                      .+..|.||||+|+..|+.+++++|++.|++++..+ ..             |.||||+|+..|+.+++++|++   .|++
T Consensus        86 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~-~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~  164 (256)
T 2etb_A           86 EFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRA-CGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPAS  164 (256)
T ss_dssp             TTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-CSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCC
T ss_pred             ccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCccc-ccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCC
Confidence            34679999999999999999999999999999988 44             9999999999999999999999   9999


Q ss_pred             CCCCCcchhhHHHHhhhhhhccCCCCCcHHHHHHH--cCCHH-------HHHHHHHCCCCC-------CCCCCCCChHHH
Q psy10604        128 INTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAK--DGHTT-------VVKALLKGGCKV-------DASTKKGNTALH  191 (225)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~--~~~~~-------~~~~Ll~~ga~~-------~~~d~~g~tpL~  191 (225)
                      ++.++.                  .|+||||+|+.  .++.+       ++++|+++|+++       +.+|..|.||||
T Consensus       165 ~n~~d~------------------~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~  226 (256)
T 2etb_A          165 LEATDS------------------LGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLK  226 (256)
T ss_dssp             TTCCCT------------------TSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHH
T ss_pred             cCccCC------------------CCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHH
Confidence            999886                  99999999999  78888       999999999999       899999999999


Q ss_pred             HHHHcCChHHHHHHHhhcC
Q psy10604        192 IAALDSLVTDIASSAITDA  210 (225)
Q Consensus       192 ~A~~~~~~~~i~~~l~~~~  210 (225)
                      +|+..|+. .++++|++.+
T Consensus       227 ~A~~~g~~-~~v~~Ll~~g  244 (256)
T 2etb_A          227 LAAKEGKI-EIFRHILQRE  244 (256)
T ss_dssp             HHHHTTCH-HHHHHHHHHH
T ss_pred             HHHHhCCH-HHHHHHHhCC
Confidence            99999996 5666666554

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.94  E-value=4e-25  Score=170.92  Aligned_cols=129  Identities=23%  Similarity=0.226  Sum_probs=82.5

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhhh
Q psy10604         65 YSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNI  144 (225)
Q Consensus        65 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~~  144 (225)
                      +..|.||||+|+..|+.+++++|++.|++++..+ ..|.||||+|+..|+.+++++|++.|++++.++            
T Consensus        89 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~------------  155 (223)
T 2f8y_A           89 MHDGTTPLILAARLAVEGMLEDLINSHADVNAVD-DLGKSALHWAAAVNNVDAAVVLLKNGANKDMQN------------  155 (223)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBC-TTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCC------------
T ss_pred             CCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcC-CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcC------------
Confidence            3445555555555555555555555555555554 445555555555555555555555555555444            


Q ss_pred             hhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHHhhcCCCC
Q psy10604        145 HQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAITDATSL  213 (225)
Q Consensus       145 ~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~~~~~~  213 (225)
                            ..|.||||+|+..++.+++++|+++|++++.+|..|.|||++|+..|+. .++++|++.+...
T Consensus       156 ------~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~-~i~~~L~~~g~~~  217 (223)
T 2f8y_A          156 ------NREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHH-DIVRLLDEYNLVR  217 (223)
T ss_dssp             ------TTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCH-HHHHHHHHTTCSS
T ss_pred             ------CCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcch-HHHHHHHHcCCCc
Confidence                  3788888888888888888888888888888888888888888888884 5566666655443

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.94  E-value=9.1e-26  Score=166.29  Aligned_cols=125  Identities=24%  Similarity=0.363  Sum_probs=113.9

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhhhh
Q psy10604         66 SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIH  145 (225)
Q Consensus        66 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~~~  145 (225)
                      +...||||+|+..|+.+++++|++.|++++..+ ..|.||||+|+. |+.+++++|++.|++++.++.            
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~------------   68 (162)
T 1ihb_A            3 EPWGNELASAAARGDLEQLTSLLQNNVNVNAQN-GFGRTALQVMKL-GNPEIARRLLLRGANPDLKDR------------   68 (162)
T ss_dssp             --CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCC-TTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCT------------
T ss_pred             chHhhHHHHHHHcCCHHHHHHHHhCCCCccccC-ccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCC------------
Confidence            346799999999999999999999999999998 899999999999 999999999999999998885            


Q ss_pred             hhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHHhhcCC
Q psy10604        146 QKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAITDAT  211 (225)
Q Consensus       146 ~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~~~~  211 (225)
                            .|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+ ++++|+..+.
T Consensus        69 ------~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~-~v~~Ll~~g~  127 (162)
T 1ihb_A           69 ------TGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLR-VVEFLVKHTA  127 (162)
T ss_dssp             ------TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH-HHHHHHHHSC
T ss_pred             ------CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHH-HHHHHHHccC
Confidence                  8999999999999999999999999999999999999999999999975 5555555443

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.94  E-value=2.3e-25  Score=167.15  Aligned_cols=128  Identities=24%  Similarity=0.355  Sum_probs=115.0

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhhh
Q psy10604         66 SDPNTSFLRAARAGHLDKLRELLEA-GVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNI  144 (225)
Q Consensus        66 ~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~~  144 (225)
                      .++.++||.|+..|+.+++++|++. +.+++..+ ..|.||||+|+..|+.+++++|++.|++++.++.           
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-----------   70 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGD-DHGFSPLHWACREGRSAVVEMLIMRGARINVMNR-----------   70 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCC-TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-----------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccC-CCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCC-----------
Confidence            4578899999999999999999998 66788888 8999999999999999999999999999999886           


Q ss_pred             hhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHHhhcCCCC
Q psy10604        145 HQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAITDATSL  213 (225)
Q Consensus       145 ~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~~~~~~  213 (225)
                             .|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+. .++++|+..++.+
T Consensus        71 -------~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~-~~v~~Ll~~ga~~  131 (179)
T 3f6q_A           71 -------GDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQD-QVAEDLVANGALV  131 (179)
T ss_dssp             -------TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH-HHHHHHHHTTCCS
T ss_pred             -------CCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCH-HHHHHHHHCCCCc
Confidence                   899999999999999999999999999999999999999999999996 5666776666554

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.93  E-value=1.8e-25  Score=165.43  Aligned_cols=129  Identities=26%  Similarity=0.350  Sum_probs=115.7

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhh
Q psy10604         65 YSDPNTSFLRAARAGHLDKLRELLE-AGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLN  143 (225)
Q Consensus        65 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~  143 (225)
                      +.+|.++||.|+..|+.+++++|++ .+.+++..+ ..|.||||+|+..|+.+++++|++.|++++.++.          
T Consensus         5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~----------   73 (165)
T 3twr_A            5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIE-GRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDK----------   73 (165)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTT-TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----------
T ss_pred             cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccc-cCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCC----------
Confidence            4668899999999999999999998 455666666 7899999999999999999999999999998886          


Q ss_pred             hhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHHhhcCCCC
Q psy10604        144 IHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAITDATSL  213 (225)
Q Consensus       144 ~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~~~~~~  213 (225)
                              .|+||||+|+..++.+++++|+++|++++.+|..|.||||+|+..|+. .++++|+..+...
T Consensus        74 --------~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~-~~v~~Ll~~ga~~  134 (165)
T 3twr_A           74 --------GGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKY-EICKLLLQHGADP  134 (165)
T ss_dssp             --------TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCH-HHHHHHHHTTCCT
T ss_pred             --------CCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCH-HHHHHHHHcCCCC
Confidence                    899999999999999999999999999999999999999999999996 5666666665544

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.93  E-value=7.6e-25  Score=170.25  Aligned_cols=146  Identities=26%  Similarity=0.354  Sum_probs=115.6

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchh--------
Q psy10604         66 SDPNTSFLRAARAGHLDKLRELLEAGVD-INTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSK--------  136 (225)
Q Consensus        66 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~--------  136 (225)
                      ..+.+|||.|+..|+.+.+++|+..+.. ++..+ ..|.||||+|+..|+.+++++|++.|++++.++..+.        
T Consensus         4 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   82 (231)
T 3aji_A            4 CVSNIMICNLAYSGKLDELKERILADKSLATRTD-QDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAAS   82 (231)
T ss_dssp             CCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCC-TTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHH
T ss_pred             ccccchHHHHHHhCCHHHHHHHHHhchhhhhcCC-CCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHH
Confidence            3478999999999999999999998765 45555 8899999999999999999999999999998776322        


Q ss_pred             ----hHHHHhhhhhhc---cCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHHhhc
Q psy10604        137 ----KLDNQLNIHQKN---IKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAITD  209 (225)
Q Consensus       137 ----~~~~~~~~~~~~---~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~~  209 (225)
                          +...++...+..   .|..|.||||+|+..++.+++++|+++|++++.++..|.||||+|+..|+.+ ++++|+..
T Consensus        83 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~-~v~~Ll~~  161 (231)
T 3aji_A           83 AGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLK-MVHILLFY  161 (231)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH-HHHHHHHT
T ss_pred             cCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHH-HHHHHHhc
Confidence                233344433333   3567888888888888888888888888888888888888888888888864 55555555


Q ss_pred             CCCC
Q psy10604        210 ATSL  213 (225)
Q Consensus       210 ~~~~  213 (225)
                      +..+
T Consensus       162 g~~~  165 (231)
T 3aji_A          162 KAST  165 (231)
T ss_dssp             TCCS
T ss_pred             CCCc
Confidence            4433

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.93  E-value=2.8e-26  Score=179.17  Aligned_cols=131  Identities=24%  Similarity=0.308  Sum_probs=119.3

Q ss_pred             ccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHh
Q psy10604         63 DCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQL  142 (225)
Q Consensus        63 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~  142 (225)
                      ..+.+|.||||+|+..|+.+++++|++.|++++..+ ..|.||||+|+..|+.+++++|++.|++++.++.         
T Consensus        16 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d-~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~---------   85 (229)
T 2vge_A           16 RARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPN-EEGITALHNAICGANYSIVDFLITAGANVNSPDS---------   85 (229)
T ss_dssp             CTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCC-TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT---------
T ss_pred             ccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCC-CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCC---------
Confidence            456778999999999999999999999999999998 8999999999999999999999999999999886         


Q ss_pred             hhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCChHHHHH--HHcCChHHHHHHHhhcCCCC
Q psy10604        143 NIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDAST-KKGNTALHIA--ALDSLVTDIASSAITDATSL  213 (225)
Q Consensus       143 ~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d-~~g~tpL~~A--~~~~~~~~i~~~l~~~~~~~  213 (225)
                               .|+||||+|+..|+.+++++|+++|++++.++ ..|.||||+|  +..|+. .++++|+..|+.+
T Consensus        86 ---------~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~-~~v~~Ll~~ga~~  149 (229)
T 2vge_A           86 ---------HGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYA-DCATYLADVEQSM  149 (229)
T ss_dssp             ---------TCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHH-HHHHHHHHHHHHT
T ss_pred             ---------CCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChH-HHHHHHHHcCCCc
Confidence                     99999999999999999999999999999986 6999999999  888885 5666666654433

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.93  E-value=1.5e-24  Score=169.42  Aligned_cols=150  Identities=21%  Similarity=0.212  Sum_probs=122.9

Q ss_pred             cccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC----CCCCCCcch--
Q psy10604         62 YDCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGV----DINTSNATS--  135 (225)
Q Consensus        62 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~----~~~~~~~~~--  135 (225)
                      ...+..|.||||+|+..|+.+++++|++.|++++..+ ..|.||||+|+..|+.+++++|++.++    +++..+..+  
T Consensus        40 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t  118 (241)
T 1k1a_A           40 DIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALD-RHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLT  118 (241)
T ss_dssp             CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCC
T ss_pred             CcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccC-CCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCc
Confidence            3356778999999999999999999999999999888 789999999999999999999999887    666555422  


Q ss_pred             ----------hhHHHHhhhhhhcc---C-CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHH
Q psy10604        136 ----------KKLDNQLNIHQKNI---K-NNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTD  201 (225)
Q Consensus       136 ----------~~~~~~~~~~~~~~---d-~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~  201 (225)
                                .+...++...+..+   + ..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+. .
T Consensus       119 ~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~-~  197 (241)
T 1k1a_A          119 ALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLL-P  197 (241)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCH-H
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCH-H
Confidence                      23444444444443   3 5799999999999999999999999999999999999999999999996 5


Q ss_pred             HHHHHhhcCCCC
Q psy10604        202 IASSAITDATSL  213 (225)
Q Consensus       202 i~~~l~~~~~~~  213 (225)
                      ++++|+..|+..
T Consensus       198 ~v~~Ll~~ga~~  209 (241)
T 1k1a_A          198 LVRTLVRSGADS  209 (241)
T ss_dssp             HHHHHHHTTCCT
T ss_pred             HHHHHHhcCCCC
Confidence            666666666554

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.93  E-value=5e-25  Score=171.49  Aligned_cols=145  Identities=22%  Similarity=0.243  Sum_probs=121.7

Q ss_pred             cccCCCCchHHHHHHHcCCHHHHHHHHHcCCCC-----CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchh
Q psy10604         62 YDCYSDPNTSFLRAARAGHLDKLRELLEAGVDI-----NTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSK  136 (225)
Q Consensus        62 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-----~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~  136 (225)
                      ...+..|.||||+|+..|+.+++++|++.|+++     +..+ ..|.||||+|+..|+.+++++|++.|++++..+... 
T Consensus        31 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~-  108 (232)
T 2rfa_A           31 HQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSEL-YEGQTALHIAVINQNVNLVRALLARGASVSARATGS-  108 (232)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTT-TTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSG-
T ss_pred             ccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccC-CCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCc-
Confidence            345788999999999999999999999999887     5555 789999999999999999999999999998876421 


Q ss_pred             hHHHHhhhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHH---HHHHhhcCCC
Q psy10604        137 KLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDI---ASSAITDATS  212 (225)
Q Consensus       137 ~~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i---~~~l~~~~~~  212 (225)
                          .+.......|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+.+   .++|+..++.
T Consensus       109 ----~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~  183 (232)
T 2rfa_A          109 ----VFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGG  183 (232)
T ss_dssp             ----GGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCS
T ss_pred             ----ceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCc
Confidence                11112233445799999999999999999999999999999999999999999999997544   2666665553

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.93  E-value=2.2e-25  Score=166.05  Aligned_cols=126  Identities=27%  Similarity=0.353  Sum_probs=114.4

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhhhhh
Q psy10604         68 PNTSFLRAARAGHLDKLRELLEAGVD-INTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQ  146 (225)
Q Consensus        68 g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~~~~  146 (225)
                      +.+|||.|+..|+.+++++|++.+.+ ++..+ ..|.||||+|+..|+.+++++|++.|++++.++.             
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-------------   67 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPD-ERGFTPLIWASAFGEIETVRFLLEWGADPHILAK-------------   67 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCC-TTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCT-------------
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCC-CCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcc-------------
Confidence            46899999999999999999999987 67777 8999999999999999999999999999998886             


Q ss_pred             hccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHHhhcCCCC
Q psy10604        147 KNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAITDATSL  213 (225)
Q Consensus       147 ~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~~~~~~  213 (225)
                           .|+||||+|+..++.+++++|+++|++++.+|..|.||||+|+..|+. .++++|+..++.+
T Consensus        68 -----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~-~~v~~Ll~~ga~~  128 (172)
T 3v30_A           68 -----ERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHV-KCVEALLARGADL  128 (172)
T ss_dssp             -----TCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCH-HHHHHHHHTTCCT
T ss_pred             -----cCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCH-HHHHHHHHcCCCc
Confidence                 899999999999999999999999999999999999999999999996 5666666666554

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.93  E-value=6.7e-25  Score=167.05  Aligned_cols=145  Identities=23%  Similarity=0.268  Sum_probs=103.8

Q ss_pred             cccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH-HCCCCCCCCCcchh----
Q psy10604         62 YDCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELL-EAGVDINTSNATSK----  136 (225)
Q Consensus        62 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll-~~g~~~~~~~~~~~----  136 (225)
                      ...+..|.||||+|+..|+.+++++|++.|++++..+ ..|.||||+|+..|+.+++++|+ ..+++++..+..+.    
T Consensus        33 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~  111 (201)
T 3hra_A           33 DEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQN-SISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALI  111 (201)
T ss_dssp             TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHH
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHH
Confidence            3356788999999999999999999999999999988 88999999999999999999999 55778877765211    


Q ss_pred             --------hHHHHhhhhh----hccCCCCCcHHHHHHHcCC-----HHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCh
Q psy10604        137 --------KLDNQLNIHQ----KNIKNNGLNALHLAAKDGH-----TTVVKALLKGGCKVDASTKKGNTALHIAALDSLV  199 (225)
Q Consensus       137 --------~~~~~~~~~~----~~~d~~g~t~L~~A~~~~~-----~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~  199 (225)
                              ....++...+    +..|..|+||||+|+..+.     .+++++|+++|++++.+|..|.||||+|+..|+.
T Consensus       112 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~  191 (201)
T 3hra_A          112 PAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYT  191 (201)
T ss_dssp             HHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred             HHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCH
Confidence                    2223333222    2234566677777666665     6666777666777666666677777777666664


Q ss_pred             HHHHHHHhh
Q psy10604        200 TDIASSAIT  208 (225)
Q Consensus       200 ~~i~~~l~~  208 (225)
                       .++++|++
T Consensus       192 -~~~~~Ll~  199 (201)
T 3hra_A          192 -EISKILAQ  199 (201)
T ss_dssp             -HHHHHHHT
T ss_pred             -hHHHHHHh
Confidence             44444444

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.93  E-value=4.6e-26  Score=180.40  Aligned_cols=128  Identities=20%  Similarity=0.181  Sum_probs=115.6

Q ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCC-------------CCCCCHHHHHHHcCCHHHHHHHHH---CCCC
Q psy10604         64 CYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNA-------------SDPNTSFLRAARAGHLDKLRELLE---AGVD  127 (225)
Q Consensus        64 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~-------------~~g~t~Lh~A~~~~~~~iv~~Ll~---~g~~  127 (225)
                      .+..|.||||+|+..|+.+++++|++.|++++..+.             ..|.||||+|+..|+.+++++|++   .|++
T Consensus        89 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~  168 (260)
T 3jxi_A           89 VYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQAD  168 (260)
T ss_dssp             SSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCC
T ss_pred             cccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCC
Confidence            345899999999999999999999999999998873             479999999999999999999999   9999


Q ss_pred             CCCCCcchhhHHHHhhhhhhccCCCCCcHHHHHHHcCC---------HHHHHHHHHCCCCC-------CCCCCCCChHHH
Q psy10604        128 INTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGH---------TTVVKALLKGGCKV-------DASTKKGNTALH  191 (225)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~~~---------~~~~~~Ll~~ga~~-------~~~d~~g~tpL~  191 (225)
                      ++.++.                  .|+||||+|+..++         .+++++|+++|+++       +.+|..|.||||
T Consensus       169 ~~~~d~------------------~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~  230 (260)
T 3jxi_A          169 LRRQDS------------------RGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLM  230 (260)
T ss_dssp             TTCCCT------------------TSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHH
T ss_pred             CcccCC------------------CCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHH
Confidence            999886                  99999999999887         79999999999999       679999999999


Q ss_pred             HHHHcCChHHHHHHHhhcC
Q psy10604        192 IAALDSLVTDIASSAITDA  210 (225)
Q Consensus       192 ~A~~~~~~~~i~~~l~~~~  210 (225)
                      +|+..|+. .++++|++++
T Consensus       231 ~A~~~g~~-~~v~~Ll~~g  248 (260)
T 3jxi_A          231 MAAKTGKI-GIFQHIIRRE  248 (260)
T ss_dssp             HHHHTTCH-HHHHHHHHHH
T ss_pred             HHHHcCCH-HHHHHHHHhC
Confidence            99999996 4555555543

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.93  E-value=6.5e-25  Score=170.83  Aligned_cols=129  Identities=19%  Similarity=0.232  Sum_probs=116.0

Q ss_pred             ccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCC------------CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC
Q psy10604         63 DCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNA------------SDPNTSFLRAARAGHLDKLRELLEAGVDINT  130 (225)
Q Consensus        63 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~------------~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~  130 (225)
                      ..+..|.||||+|+..|+.+++++|++.|++++..+.            ..|.||||+|+..|+.+++++|++.|++++.
T Consensus        70 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~  149 (232)
T 2rfa_A           70 SELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRA  149 (232)
T ss_dssp             STTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred             ccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence            3467899999999999999999999999999998762            2699999999999999999999999999999


Q ss_pred             CCcchhhHHHHhhhhhhccCCCCCcHHHHHHHcCCHHHH----HHHHHCCCCC------CCCCCCCChHHHHHHHcCChH
Q psy10604        131 SNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVV----KALLKGGCKV------DASTKKGNTALHIAALDSLVT  200 (225)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~----~~Ll~~ga~~------~~~d~~g~tpL~~A~~~~~~~  200 (225)
                      ++.                  .|+||||+|+..++.+++    ++|+++|++.      +.+|..|.||||+|+..|+.+
T Consensus       150 ~d~------------------~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~  211 (232)
T 2rfa_A          150 QDS------------------LGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIV  211 (232)
T ss_dssp             CCT------------------TSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHH
T ss_pred             CCC------------------CCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHH
Confidence            886                  999999999999999988    9999999998      589999999999999999965


Q ss_pred             HHHHHHhhcC
Q psy10604        201 DIASSAITDA  210 (225)
Q Consensus       201 ~i~~~l~~~~  210 (225)
                       ++++|++.+
T Consensus       212 -~v~~Ll~~g  220 (232)
T 2rfa_A          212 -MFQHLMQKR  220 (232)
T ss_dssp             -HHHHHHHHH
T ss_pred             -HHHHHHhcC
Confidence             555555543

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.93  E-value=5.5e-25  Score=170.58  Aligned_cols=129  Identities=21%  Similarity=0.202  Sum_probs=98.3

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHcC--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHh
Q psy10604         65 YSDPNTSFLRAARAGHLDKLRELLEAG--VDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQL  142 (225)
Q Consensus        65 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~  142 (225)
                      +..|.||||+|+..|+.+++++|++.|  ++++..+ ..|.||||+|+..|+.+++++|++.|++++.++.         
T Consensus        69 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~---------  138 (228)
T 2dzn_A           69 DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKIT-NQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDK---------  138 (228)
T ss_dssp             CTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCC-TTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCT---------
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCC-cCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCC---------
Confidence            455666666666666666666666666  6666665 5666666666666666666666666666666654         


Q ss_pred             hhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCChHHHHHHHcCChHHHHHHHh-hcCCCC
Q psy10604        143 NIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGG-CKVDASTKKGNTALHIAALDSLVTDIASSAI-TDATSL  213 (225)
Q Consensus       143 ~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g-a~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~-~~~~~~  213 (225)
                               .|+||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..|+.+ ++++|+ ..|+..
T Consensus       139 ---------~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~-~v~~Ll~~~ga~~  201 (228)
T 2dzn_A          139 ---------FNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGD-AAVLLVEKYGAEY  201 (228)
T ss_dssp             ---------TSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHH-HHHHHHHHHCCCS
T ss_pred             ---------CCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHH-HHHHHHHhcCCCC
Confidence                     8999999999999999999999999 999999999999999999999965 555555 555544

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.93  E-value=1.3e-25  Score=179.29  Aligned_cols=129  Identities=22%  Similarity=0.256  Sum_probs=115.7

Q ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCC-------------CCCCCHHHHHHHcCCHHHHHHHHH---CCCC
Q psy10604         64 CYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNA-------------SDPNTSFLRAARAGHLDKLRELLE---AGVD  127 (225)
Q Consensus        64 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~-------------~~g~t~Lh~A~~~~~~~iv~~Ll~---~g~~  127 (225)
                      .+..|.||||+|+..|+.+++++|++.|++++..+.             ..|.||||+|+..|+.+++++|++   .|++
T Consensus        97 ~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad  176 (273)
T 2pnn_A           97 SYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPAD  176 (273)
T ss_dssp             TTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCC
T ss_pred             ccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCC
Confidence            456899999999999999999999999999999883             179999999999999999999999   9999


Q ss_pred             CCCCCcchhhHHHHhhhhhhccCCCCCcHHHHHHHcCC---------HHHHHHHHHCCCCCC-------CCCCCCChHHH
Q psy10604        128 INTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGH---------TTVVKALLKGGCKVD-------ASTKKGNTALH  191 (225)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~~~---------~~~~~~Ll~~ga~~~-------~~d~~g~tpL~  191 (225)
                      ++.++.                  .|+||||+|+..++         .+++++|+++|++++       .+|..|+||||
T Consensus       177 ~~~~d~------------------~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~  238 (273)
T 2pnn_A          177 ISARDS------------------VGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLA  238 (273)
T ss_dssp             TTCCCT------------------TSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHH
T ss_pred             ceeeCC------------------CCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHH
Confidence            999886                  99999999999988         899999999999997       48999999999


Q ss_pred             HHHHcCChHHHHHHHhhcC
Q psy10604        192 IAALDSLVTDIASSAITDA  210 (225)
Q Consensus       192 ~A~~~~~~~~i~~~l~~~~  210 (225)
                      +|+..|+.+.+..++-.++
T Consensus       239 ~A~~~g~~~iv~~Ll~~ga  257 (273)
T 2pnn_A          239 LAASSGKIGVLAYILQREI  257 (273)
T ss_dssp             HHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHhChHHHHHHHHHCCC
Confidence            9999999754444444444

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.93  E-value=1.7e-24  Score=177.58  Aligned_cols=147  Identities=24%  Similarity=0.273  Sum_probs=99.6

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcch---------
Q psy10604         65 YSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATS---------  135 (225)
Q Consensus        65 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~---------  135 (225)
                      +..|.||||+|+..|+.+++++|++.|++++..+ ..|.||||+|+..|+.+++++|++.|++++..+..+         
T Consensus        88 ~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~  166 (351)
T 3utm_A           88 DKGGLVPLHNACSYGHYEVTELLLKHGACVNAMD-LWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPT  166 (351)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSS
T ss_pred             CCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCC-CCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhh
Confidence            4455666666666666666666666666666555 556666666666666666666666666555433110         


Q ss_pred             ------------------------------------------------------------hhHHHHhhhhh---hccCCC
Q psy10604        136 ------------------------------------------------------------KKLDNQLNIHQ---KNIKNN  152 (225)
Q Consensus       136 ------------------------------------------------------------~~~~~~~~~~~---~~~d~~  152 (225)
                                                                                  ..+...+...+   +..|..
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~  246 (351)
T 3utm_A          167 PELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKD  246 (351)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTT
T ss_pred             hhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCC
Confidence                                                                        11222233222   234678


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHHhhcCCCC
Q psy10604        153 GLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAITDATSL  213 (225)
Q Consensus       153 g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~~~~~~  213 (225)
                      |+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+. .++++|+..|+..
T Consensus       247 g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~-~~v~~Ll~~gad~  306 (351)
T 3utm_A          247 FMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHL-QTCRLLLSYGSDP  306 (351)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH-HHHHHHHHTTCCT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcH-HHHHHHHHcCCCC
Confidence            99999999999999999999999999999999999999999999996 5666666666554

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.93  E-value=1.4e-24  Score=167.79  Aligned_cols=146  Identities=23%  Similarity=0.257  Sum_probs=91.0

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC-CCCCCCcchh--------
Q psy10604         66 SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGV-DINTSNATSK--------  136 (225)
Q Consensus        66 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~-~~~~~~~~~~--------  136 (225)
                      ..|.||||+|+..|+.+++++|++.|++++..+ ..|.||||+|+..|+.+++++|++.+. +++..+..+.        
T Consensus        23 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~  101 (223)
T 2f8y_A           23 RTGETALHLAARYSRSDAAKRLLEASADANIQD-NMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAAR  101 (223)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHH
T ss_pred             CCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcC-CCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHH
Confidence            444555555555555555555555555555444 445555555555555555555554443 3333322111        


Q ss_pred             ----hHHHHhhhhhh---ccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHHhhc
Q psy10604        137 ----KLDNQLNIHQK---NIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAITD  209 (225)
Q Consensus       137 ----~~~~~~~~~~~---~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~~  209 (225)
                          ....++...+.   ..|..|+||||+|+..++.+++++|+++|++++.+|..|.||||+|+..|+. .++++|+..
T Consensus       102 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~-~~v~~Ll~~  180 (223)
T 2f8y_A          102 LAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSY-ETAKVLLDH  180 (223)
T ss_dssp             HTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCH-HHHHHHHHT
T ss_pred             hCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCH-HHHHHHHHc
Confidence                12222222221   1235899999999999999999999999999999999999999999999996 556666665


Q ss_pred             CCCC
Q psy10604        210 ATSL  213 (225)
Q Consensus       210 ~~~~  213 (225)
                      ++..
T Consensus       181 ga~~  184 (223)
T 2f8y_A          181 FANR  184 (223)
T ss_dssp             TCCT
T ss_pred             CCCC
Confidence            5544

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.93  E-value=2e-26  Score=173.79  Aligned_cols=115  Identities=32%  Similarity=0.413  Sum_probs=108.4

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhhh
Q psy10604         65 YSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNI  144 (225)
Q Consensus        65 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~~  144 (225)
                      +..|.||||+|+..|+.+++++|++ |++++..+ ..|.||||+|+..|+.+++++|++.|++++.++.           
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d-~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~-----------  107 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVD-ENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDM-----------  107 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCC-TTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCS-----------
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcC-CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCC-----------
Confidence            4568899999999999999999999 99999998 8999999999999999999999999999998873           


Q ss_pred             hhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCC
Q psy10604        145 HQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSL  198 (225)
Q Consensus       145 ~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~  198 (225)
                            ..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++
T Consensus       108 ------~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~  155 (183)
T 3deo_A          108 ------RGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILK  155 (183)
T ss_dssp             ------SSSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHH
T ss_pred             ------CCCCCHHHHHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhcc
Confidence                  389999999999999999999999999999999999999999998755

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.93  E-value=2.1e-25  Score=174.23  Aligned_cols=145  Identities=21%  Similarity=0.175  Sum_probs=87.0

Q ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC------CCCcc---
Q psy10604         64 CYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDIN------TSNAT---  134 (225)
Q Consensus        64 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~------~~~~~---  134 (225)
                      .+..|.||||+|+..|+.+++++|++.|++++..+ ..|.||||+|+..|+.+++++|++.|+++.      ..+..   
T Consensus        41 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t  119 (236)
T 1ikn_D           41 QNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRD-FRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHT  119 (236)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCC-TTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCC
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC-CCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCC
Confidence            45667788888888888888888888888887777 778888888888888888888888776532      22210   


Q ss_pred             ---------hhhHHHHhhhhhhcc---CC-CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHH
Q psy10604        135 ---------SKKLDNQLNIHQKNI---KN-NGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTD  201 (225)
Q Consensus       135 ---------~~~~~~~~~~~~~~~---d~-~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~  201 (225)
                               ......++...+..+   +. .|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+. .
T Consensus       120 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~-~  198 (236)
T 1ikn_D          120 CLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPST-R  198 (236)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCH-H
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCch-H
Confidence                     011222222222221   12 455555555555555555555555555555555555555555555553 3


Q ss_pred             HHHHHhhcC
Q psy10604        202 IASSAITDA  210 (225)
Q Consensus       202 i~~~l~~~~  210 (225)
                      ++++|+..|
T Consensus       199 ~~~~Ll~~g  207 (236)
T 1ikn_D          199 IQQQLGQLT  207 (236)
T ss_dssp             HHHHHHTTS
T ss_pred             HHHHHHHcc
Confidence            344444433

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.93  E-value=3.5e-25  Score=175.02  Aligned_cols=143  Identities=22%  Similarity=0.180  Sum_probs=101.8

Q ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHHcCC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchh------
Q psy10604         64 CYSDPNTSFLRAARAGHLDKLRELLEAGV-DINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSK------  136 (225)
Q Consensus        64 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~------  136 (225)
                      .+..|.||||+|+..|+.+++++|++.|. +++..+ ..|.||||+|+..|+.+++++|++.|++++.++..+.      
T Consensus        86 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A  164 (253)
T 1yyh_A           86 QDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARM-HDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWA  164 (253)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCC-TTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccC-CCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHH
Confidence            34556666666666666666666666665 555555 5666666666666666666666666666665554222      


Q ss_pred             ------hHHHHhhhhhhc---cCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHHh
Q psy10604        137 ------KLDNQLNIHQKN---IKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAI  207 (225)
Q Consensus       137 ------~~~~~~~~~~~~---~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~  207 (225)
                            ....++...+.+   .|..|+||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..|+. .|+.+|.
T Consensus       165 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~-~i~~~l~  243 (253)
T 1yyh_A          165 AAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHH-DIVRLLD  243 (253)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCH-HHHHHHH
T ss_pred             HHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHHHHHHcCCH-HHHHHHH
Confidence                  122333333322   346899999999999999999999999999999999999999999999996 5555554


Q ss_pred             h
Q psy10604        208 T  208 (225)
Q Consensus       208 ~  208 (225)
                      .
T Consensus       244 ~  244 (253)
T 1yyh_A          244 L  244 (253)
T ss_dssp             C
T ss_pred             H
Confidence            4

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.93  E-value=4.6e-26  Score=172.53  Aligned_cols=122  Identities=16%  Similarity=0.093  Sum_probs=109.6

Q ss_pred             CCCchHHHHHHHcCCH----HHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCC------HHHHHHHHHCCCCCCCCCcch
Q psy10604         66 SDPNTSFLRAARAGHL----DKLRELLEAGVDINTSNASDPNTSFLRAARAGH------LDKLRELLEAGVDINTSNATS  135 (225)
Q Consensus        66 ~~g~t~L~~A~~~g~~----~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~------~~iv~~Ll~~g~~~~~~~~~~  135 (225)
                      ..|.||||+|+..|+.    +++++|++.|++++.++ ..|+||||+|+..++      .+++++|++.|++++.++.  
T Consensus        36 ~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d-~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~--  112 (186)
T 3t8k_A           36 VLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRT-KEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYK--  112 (186)
T ss_dssp             HHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCC-TTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBG--
T ss_pred             cCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCC-CCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCC--
Confidence            5689999999999985    59999999999999999 899999999999987      5789999999999999986  


Q ss_pred             hhHHHHhhhhhhccCCCCC-cHHHHHHHcC-----CHHHHHHHHH-CCCCCCCCCCCCChHHHHHHHcCChHHHHHHHh
Q psy10604        136 KKLDNQLNIHQKNIKNNGL-NALHLAAKDG-----HTTVVKALLK-GGCKVDASTKKGNTALHIAALDSLVTDIASSAI  207 (225)
Q Consensus       136 ~~~~~~~~~~~~~~d~~g~-t~L~~A~~~~-----~~~~~~~Ll~-~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~  207 (225)
                                      .|+ ||||+|+..+     ..+++++|+. +|++++.+|..|+||||+|+..|+.+ ++++|.
T Consensus       113 ----------------~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~-~v~~L~  174 (186)
T 3t8k_A          113 ----------------PYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPI-ALKMME  174 (186)
T ss_dssp             ----------------GGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHH-HHHHHH
T ss_pred             ----------------CcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHH-HHHHHH
Confidence                            899 9999999844     4569999999 99999999999999999999999964 444443

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.93  E-value=8.1e-25  Score=175.39  Aligned_cols=124  Identities=27%  Similarity=0.442  Sum_probs=84.6

Q ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHHcCC-CCCCCCCCC--------------------------------------CCC
Q psy10604         64 CYSDPNTSFLRAARAGHLDKLRELLEAGV-DINTSNASD--------------------------------------PNT  104 (225)
Q Consensus        64 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~~--------------------------------------g~t  104 (225)
                      .+..|.||||+|+..|+.+++++|++.|+ +++..+ ..                                      |.|
T Consensus       107 ~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~-~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~t  185 (276)
T 4hbd_A          107 ADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQN-RAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQT  185 (276)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCC-TTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCC
T ss_pred             CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCC-CCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCC
Confidence            46789999999999999999999999998 777665 44                                      455


Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhhhhhhccCCCCCcHHHHHHHcCCHHHHHHHHH-CCCCCCCCC
Q psy10604        105 SFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLK-GGCKVDAST  183 (225)
Q Consensus       105 ~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~-~ga~~~~~d  183 (225)
                      |||+|+..|+.+++++|++.|++++.++.                  .|+||||+|+..|+.+++++|++ .|++++.+|
T Consensus       186 pLh~A~~~g~~~~v~~Ll~~gad~n~~d~------------------~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d  247 (276)
T 4hbd_A          186 ALMLAVSHGRVDVVKALLACEADVNVQDD------------------DGSTALMCACEHGHKEIAGLLLAVPSCDISLTD  247 (276)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCT------------------TSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCC
T ss_pred             HHHHHHHcCCHHHHHHHHhCCCCCCCCCC------------------CCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcC
Confidence            55555555555555555555555555543                  66666666666666666666666 566666666


Q ss_pred             CCCChHHHHHHHcCChHHHHHHHh
Q psy10604        184 KKGNTALHIAALDSLVTDIASSAI  207 (225)
Q Consensus       184 ~~g~tpL~~A~~~~~~~~i~~~l~  207 (225)
                      ..|.||||+|+..|+. .++++|+
T Consensus       248 ~~g~TpL~~A~~~g~~-~iv~~Ll  270 (276)
T 4hbd_A          248 RDGSTALMVALDAGQS-EIASMLY  270 (276)
T ss_dssp             TTSCCHHHHHHHHTCH-HHHHHHH
T ss_pred             CCCCCHHHHHHHcCCH-HHHHHHH
Confidence            6666666666666664 3344433

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.93  E-value=4e-26  Score=176.96  Aligned_cols=127  Identities=25%  Similarity=0.350  Sum_probs=113.3

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCcchhhHHHHhh
Q psy10604         65 YSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEA-GVDINTSNATSKKLDNQLN  143 (225)
Q Consensus        65 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~-g~~~~~~~~~~~~~~~~~~  143 (225)
                      +..|.||||+|+..|+.+++++|++.|++++..+ ..|.||||+|+..|+.+++++|++. |++++.++.          
T Consensus        70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~----------  138 (222)
T 3ehr_A           70 AESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLD-KAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNK----------  138 (222)
T ss_dssp             EEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCT----------
T ss_pred             ccccccccccccccCcHHHHHHHHhCCCCccccC-CCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCC----------
Confidence            4568899999999999999999999999999998 8999999999999999999999999 999999886          


Q ss_pred             hhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHHhhcCC
Q psy10604        144 IHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAITDAT  211 (225)
Q Consensus       144 ~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~~~~  211 (225)
                              .|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+ +++.+...++
T Consensus       139 --------~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~-~l~~l~~~~~  197 (222)
T 3ehr_A          139 --------LGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACAS-LLKKKQGTDA  197 (222)
T ss_dssp             --------TSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHH-HHC-------
T ss_pred             --------CCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHH-HHHHHhccch
Confidence                    9999999999999999999999999999999999999999999988864 4444444443

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.93  E-value=1.9e-24  Score=164.59  Aligned_cols=112  Identities=28%  Similarity=0.372  Sum_probs=84.8

Q ss_pred             cCCCCchHHHHHHHcCCHHHHHHHH-HcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCCCcch------
Q psy10604         64 CYSDPNTSFLRAARAGHLDKLRELL-EAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG-VDINTSNATS------  135 (225)
Q Consensus        64 ~~~~g~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g-~~~~~~~~~~------  135 (225)
                      .+..|.||||+|+..|+.+++++|+ ..+.+++..+ ..|.||||+|+..|+.+++++|++.| ++++.++..+      
T Consensus        68 ~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~  146 (201)
T 3hra_A           68 QNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHN-RYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIE  146 (201)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCC-TTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccc-CCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHH
Confidence            4566788888888888888888888 4556777777 77888888888888888888888887 7777666522      


Q ss_pred             -----------hhHHHHhhhhhhc---cCCCCCcHHHHHHHcCCHHHHHHHHHCC
Q psy10604        136 -----------KKLDNQLNIHQKN---IKNNGLNALHLAAKDGHTTVVKALLKGG  176 (225)
Q Consensus       136 -----------~~~~~~~~~~~~~---~d~~g~t~L~~A~~~~~~~~~~~Ll~~g  176 (225)
                                 .+....+...+.+   .|..|+||||+|+..|+.+++++|+++|
T Consensus       147 A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          147 AVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             HHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             HHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence                       2233444433333   4578999999999999999999999887

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.93  E-value=3.2e-24  Score=166.24  Aligned_cols=130  Identities=20%  Similarity=0.222  Sum_probs=116.2

Q ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHHcC--CCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHCC--CCCCCCCcchhhH
Q psy10604         64 CYSDPNTSFLRAARAGHLDKLRELLEAG--VDINT-SNASDPNTSFLRAARAGHLDKLRELLEAG--VDINTSNATSKKL  138 (225)
Q Consensus        64 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~-~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g--~~~~~~~~~~~~~  138 (225)
                      .+..|.||||+|+..|+.+++++|++.|  .+++. .+ ..|.||||+|+..|+.+++++|++.|  ++++..+.     
T Consensus        32 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~-----  105 (228)
T 2dzn_A           32 KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPD-DSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITN-----  105 (228)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCC-TTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCT-----
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCC-CCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCc-----
Confidence            4688999999999999999999999999  56655 55 78999999999999999999999998  77777775     


Q ss_pred             HHHhhhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHHhhcC-CCC
Q psy10604        139 DNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAITDA-TSL  213 (225)
Q Consensus       139 ~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~~~-~~~  213 (225)
                                   .|.||||+|+..++.+++++|+++|++++.+|..|.||||+|+..|+. .++++|+..+ ..+
T Consensus       106 -------------~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~-~~v~~Ll~~g~~~~  167 (228)
T 2dzn_A          106 -------------QGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSL-KLIELLCGLGKSAV  167 (228)
T ss_dssp             -------------TCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCH-HHHHHHHTTTCCCS
T ss_pred             -------------CCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCH-HHHHHHHhcCcccc
Confidence                         899999999999999999999999999999999999999999999996 5666666655 443

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.93  E-value=1.5e-25  Score=180.45  Aligned_cols=148  Identities=14%  Similarity=0.161  Sum_probs=127.5

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcch-hh--------
Q psy10604         67 DPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATS-KK--------  137 (225)
Q Consensus        67 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~-~~--------  137 (225)
                      +|.||||+|+..|+.+++++|++.|++++..+ ..|.||||+|+..|+.+++++|++.|++++.++..+ ..        
T Consensus        61 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d-~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~  139 (285)
T 3kea_A           61 ENEFPLHQAATLEDTKIVKILLFSGLDDSQFD-DKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVML  139 (285)
T ss_dssp             TTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcC-CCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHc
Confidence            58999999999999999999999999999998 899999999999999999999999999999887654 22        


Q ss_pred             ----HHHHhhhhhhcc-CC-CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChH-HHHHHHcCChHHHHHHHhhcC
Q psy10604        138 ----LDNQLNIHQKNI-KN-NGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTA-LHIAALDSLVTDIASSAITDA  210 (225)
Q Consensus       138 ----~~~~~~~~~~~~-d~-~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tp-L~~A~~~~~~~~i~~~l~~~~  210 (225)
                          ...++...+... +. .|+||||+|+..|+.+++++|+++|++++.+|..|+|| ||+|+..|+. .++++|+..|
T Consensus       140 ~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~-~~v~~Ll~~g  218 (285)
T 3kea_A          140 NDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDI-EMLQALFKYD  218 (285)
T ss_dssp             TCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCH-HHHHHHTTSC
T ss_pred             CCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCH-HHHHHHHHcC
Confidence                333344333333 33 78999999999999999999999999999999999998 9999999995 6778888888


Q ss_pred             CCCchH
Q psy10604        211 TSLPCS  216 (225)
Q Consensus       211 ~~~~~~  216 (225)
                      +..+..
T Consensus       219 ad~~~~  224 (285)
T 3kea_A          219 INIYSA  224 (285)
T ss_dssp             BCSTTT
T ss_pred             CCCCCC
Confidence            777554

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.93  E-value=3.2e-25  Score=178.51  Aligned_cols=127  Identities=21%  Similarity=0.211  Sum_probs=105.4

Q ss_pred             cccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHH
Q psy10604         62 YDCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQ  141 (225)
Q Consensus        62 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~  141 (225)
                      ...+..|.||||+|+..|+.+++++|++.|++++..+   |.||||+|+..|+.+++++|++.|++++.++.        
T Consensus        25 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~---g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~--------   93 (285)
T 3kea_A           25 FKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE---NEFPLHQAATLEDTKIVKILLFSGLDDSQFDD--------   93 (285)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCT---TCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCT--------
T ss_pred             CccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC---CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCC--------
Confidence            4457889999999999999999999999999998874   89999999999999999999999999998886        


Q ss_pred             hhhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC-ChHHHHHHHcCChHHHHHHHhhcC
Q psy10604        142 LNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKG-NTALHIAALDSLVTDIASSAITDA  210 (225)
Q Consensus       142 ~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g-~tpL~~A~~~~~~~~i~~~l~~~~  210 (225)
                                .|+||||+|+..|+.+++++|+++|++++.++..| .||||+|+..|+. .++++|+..+
T Consensus        94 ----------~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~-~~v~~Ll~~g  152 (285)
T 3kea_A           94 ----------KGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDV-SIVSYFLSEI  152 (285)
T ss_dssp             ----------TSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCH-HHHHHHHTTS
T ss_pred             ----------CCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCH-HHHHHHHhCC
Confidence                      77777777777777777777777777777777777 6777777777775 3444444444

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.93  E-value=3.6e-25  Score=183.56  Aligned_cols=128  Identities=15%  Similarity=0.222  Sum_probs=118.2

Q ss_pred             cCCCCchHHHHHHHcC--CHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-----CCCCCcchh
Q psy10604         64 CYSDPNTSFLRAARAG--HLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVD-----INTSNATSK  136 (225)
Q Consensus        64 ~~~~g~t~L~~A~~~g--~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~-----~~~~~~~~~  136 (225)
                      .+..|.||||+|+..|  +.+++++|++.|++++..+ ..|.||||+|+..|+.+++++|++.|++     ++..+.   
T Consensus       134 ~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~---  209 (364)
T 3ljn_A          134 KHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKD-KADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANK---  209 (364)
T ss_dssp             EEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCC-TTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCT---
T ss_pred             CCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccC-CCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCC---
Confidence            4567999999999999  9999999999999999998 8999999999999999999999999998     887775   


Q ss_pred             hHHHHhhhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHHhhcCC
Q psy10604        137 KLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAITDAT  211 (225)
Q Consensus       137 ~~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~~~~  211 (225)
                                     .|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+. .++++|+..++
T Consensus       210 ---------------~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~-~~v~~Ll~~~~  268 (364)
T 3ljn_A          210 ---------------QGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMV-LLTKELLQKTD  268 (364)
T ss_dssp             ---------------TCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCH-HHHHHHHHHSC
T ss_pred             ---------------CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChH-HHHHHHHHcCC
Confidence                           999999999999999999999999999999999999999999999996 56666666543

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.93  E-value=1.2e-25  Score=176.37  Aligned_cols=128  Identities=23%  Similarity=0.264  Sum_probs=114.7

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhhh
Q psy10604         65 YSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNI  144 (225)
Q Consensus        65 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~~  144 (225)
                      +..|.||||+|+..|+.+++++|++.|++++..+ ..|.||||+|+..|+.+++++|++.|++++.++.           
T Consensus        34 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d-~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~-----------  101 (239)
T 1ycs_B           34 NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPN-DEGITALHNAVCAGHTEIVKFLVQFGVNVNAADS-----------  101 (239)
T ss_dssp             ---CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCC-TTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCT-----------
T ss_pred             CchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcC-CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCC-----------
Confidence            4668999999999999999999999999999998 8999999999999999999999999999999886           


Q ss_pred             hhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCC-hHHHHH--HHcCChHHHHHHHhhcCCC
Q psy10604        145 HQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGN-TALHIA--ALDSLVTDIASSAITDATS  212 (225)
Q Consensus       145 ~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~-tpL~~A--~~~~~~~~i~~~l~~~~~~  212 (225)
                             .|+||||+|+..|+.+++++|+++|++++.++..|. ||||+|  +..|+. .++++|+..++.
T Consensus       102 -------~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~-~~~~~Ll~~~a~  164 (239)
T 1ycs_B          102 -------DGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYT-QCSQFLYGVQEK  164 (239)
T ss_dssp             -------TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCC-CHHHHHHHHHHH
T ss_pred             -------CCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccH-HHHHHHHHhhhc
Confidence                   999999999999999999999999999999998887 999999  778886 455566554433

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.93  E-value=2.6e-24  Score=173.17  Aligned_cols=147  Identities=22%  Similarity=0.273  Sum_probs=96.9

Q ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcc---------
Q psy10604         64 CYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNAT---------  134 (225)
Q Consensus        64 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~---------  134 (225)
                      .+.+|.||||+|+..|+.+++++|++.|++++..+ ..|.||||+|+..|+.+++++|++.|++++..+..         
T Consensus        88 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~  166 (285)
T 3d9h_A           88 ITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVT-ADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAAR  166 (285)
T ss_dssp             ECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCC-TTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSCTTSCHHHHHHH
T ss_pred             cCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCC-CCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
Confidence            45667777777777777777777777777777776 67777777777777777777777777776644321         


Q ss_pred             --hhhHHHHhhhhhhc---cCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHHhhc
Q psy10604        135 --SKKLDNQLNIHQKN---IKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAITD  209 (225)
Q Consensus       135 --~~~~~~~~~~~~~~---~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~~  209 (225)
                        ......++...+.+   .|..|+||||+|+..|+.+++++|+++|++++. +..|.||||+|+..|+. .++++|+..
T Consensus       167 ~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~-~~v~~Ll~~  244 (285)
T 3d9h_A          167 RGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTASE-ELACLLMDF  244 (285)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBTTBCHHHHHHHTTCH-HHHHHHHHT
T ss_pred             cCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCCH-HHHHHHHHC
Confidence              11233333333322   345677777777777777777777777777763 66677777777777774 455555555


Q ss_pred             CCCC
Q psy10604        210 ATSL  213 (225)
Q Consensus       210 ~~~~  213 (225)
                      |+.+
T Consensus       245 gad~  248 (285)
T 3d9h_A          245 GADT  248 (285)
T ss_dssp             TCCT
T ss_pred             CCCC
Confidence            5443

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.92  E-value=2.4e-24  Score=176.85  Aligned_cols=148  Identities=22%  Similarity=0.219  Sum_probs=120.1

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHH------
Q psy10604         66 SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLD------  139 (225)
Q Consensus        66 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~------  139 (225)
                      .+|.|+||.|+..|++++|++||++|++++.++...|+||||+|+..|+.+++++|+++|++++.++.......      
T Consensus        23 ~~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~  102 (337)
T 4g8k_A           23 VEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIA  102 (337)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             CCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhc
Confidence            34789999999999999999999999999998856799999999999999999999999999998876332211      


Q ss_pred             ------HHhh---hhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCC----------CCCCChHHHHHHHcCChH
Q psy10604        140 ------NQLN---IHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDAS----------TKKGNTALHIAALDSLVT  200 (225)
Q Consensus       140 ------~~~~---~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~----------d~~g~tpL~~A~~~~~~~  200 (225)
                            ..+.   ...+..|..|+||||+|+..|+.+++++|+.+|++++..          +..|.||||+|+..|+.+
T Consensus       103 ~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~  182 (337)
T 4g8k_A          103 GSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVE  182 (337)
T ss_dssp             TCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHH
T ss_pred             ccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHH
Confidence                  1111   122445789999999999999999999999999998754          456899999999999975


Q ss_pred             HHHHHHhhcCCCC
Q psy10604        201 DIASSAITDATSL  213 (225)
Q Consensus       201 ~i~~~l~~~~~~~  213 (225)
                      .+..+|-+.++.+
T Consensus       183 ~v~~LL~~~gad~  195 (337)
T 4g8k_A          183 VLKILLDEMGADV  195 (337)
T ss_dssp             HHHHHHHHSCCCT
T ss_pred             HHHHHHhccCCCc
Confidence            5444443445443

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.92  E-value=3.3e-24  Score=167.23  Aligned_cols=149  Identities=27%  Similarity=0.401  Sum_probs=113.5

Q ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchh-------
Q psy10604         64 CYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSK-------  136 (225)
Q Consensus        64 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~-------  136 (225)
                      .+..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|++.|++++.++..+.       
T Consensus         7 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   85 (237)
T 3b7b_A            7 EHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCS-EDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAA   85 (237)
T ss_dssp             SSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCC-TTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHH
T ss_pred             ccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccC-CCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHH
Confidence            35667777777777777777777777777777776 6777777777777777777777777777766554222       


Q ss_pred             -----hHHHHhhhhh----hccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHHh
Q psy10604        137 -----KLDNQLNIHQ----KNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAI  207 (225)
Q Consensus       137 -----~~~~~~~~~~----~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~  207 (225)
                           +...++...+    ...+..|+||||+|+..++.+++++|+++|++++.++..|.||||+|+..|+. .++++|+
T Consensus        86 ~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~-~~~~~Ll  164 (237)
T 3b7b_A           86 KKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCV-DIAEILL  164 (237)
T ss_dssp             HTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCH-HHHHHHH
T ss_pred             HcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCH-HHHHHHH
Confidence                 2223333222    22456899999999999999999999999999999999999999999999995 5777777


Q ss_pred             hcCCCCc
Q psy10604        208 TDATSLP  214 (225)
Q Consensus       208 ~~~~~~~  214 (225)
                      ..+..++
T Consensus       165 ~~g~~~~  171 (237)
T 3b7b_A          165 AAKCDLH  171 (237)
T ss_dssp             TTTCCTT
T ss_pred             HcCCCCC
Confidence            7776654

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.92  E-value=4.5e-24  Score=166.46  Aligned_cols=147  Identities=26%  Similarity=0.398  Sum_probs=102.3

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCCCcchh-------
Q psy10604         65 YSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG-VDINTSNATSK-------  136 (225)
Q Consensus        65 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g-~~~~~~~~~~~-------  136 (225)
                      +..|.||||+|+..|+.+++++|++.|++++..+ ..|.||||+|+..|+.+++++|++.| .+++..+..+.       
T Consensus        41 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~  119 (237)
T 3b7b_A           41 SEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKD-AEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWAT  119 (237)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCC-TTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHH
T ss_pred             CCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCC-CCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHH
Confidence            4556666666666666666666666666666665 56666666666666666666666665 55554443211       


Q ss_pred             -----hHHHHhhhhhhc---cCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHHhh
Q psy10604        137 -----KLDNQLNIHQKN---IKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAIT  208 (225)
Q Consensus       137 -----~~~~~~~~~~~~---~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~  208 (225)
                           ....++...+..   .+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+. .++++|+.
T Consensus       120 ~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~-~~v~~Ll~  198 (237)
T 3b7b_A          120 EYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRY-DCVVLFLS  198 (237)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCH-HHHHHHHT
T ss_pred             HcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCH-hHHHHHHH
Confidence                 223333333322   345899999999999999999999999999999999999999999999996 45566666


Q ss_pred             cCCCC
Q psy10604        209 DATSL  213 (225)
Q Consensus       209 ~~~~~  213 (225)
                      .|+.+
T Consensus       199 ~gad~  203 (237)
T 3b7b_A          199 RDSDV  203 (237)
T ss_dssp             TTCCT
T ss_pred             cCCCC
Confidence            55544

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.92  E-value=4e-25  Score=174.70  Aligned_cols=142  Identities=22%  Similarity=0.207  Sum_probs=115.5

Q ss_pred             cCCCCchHHHHHHHc---CCHHHHHHHHHcCCCCCCCC----------CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC
Q psy10604         64 CYSDPNTSFLRAARA---GHLDKLRELLEAGVDINTSN----------ASDPNTSFLRAARAGHLDKLRELLEAGVDINT  130 (225)
Q Consensus        64 ~~~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~~~~~----------~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~  130 (225)
                      .+..|.||||+|+..   |+.+++++|++.|++++..+          +..|.||||+|+..|+.+++++|++.|++++.
T Consensus        39 ~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~  118 (256)
T 2etb_A           39 EGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHL  118 (256)
T ss_dssp             BTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             CCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCc
Confidence            478899999999999   99999999999988776322          15799999999999999999999999999998


Q ss_pred             CCcchhhHHHHhhhhhhccCCCCCcHHHHHHHcCCHHHHHHHHH---CCCCCCCCCCCCChHHHHHHH--cCChH-----
Q psy10604        131 SNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLK---GGCKVDASTKKGNTALHIAAL--DSLVT-----  200 (225)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~---~ga~~~~~d~~g~tpL~~A~~--~~~~~-----  200 (225)
                      ++....     +.......|..|+||||+|+..|+.+++++|++   +|++++.+|..|+||||+|+.  .++.+     
T Consensus       119 ~~~~~~-----~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~  193 (256)
T 2etb_A          119 RACGRF-----FQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALV  193 (256)
T ss_dssp             CCCSGG-----GSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHH
T ss_pred             cccccc-----ccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHH
Confidence            875110     000000111239999999999999999999999   999999999999999999998  77754     


Q ss_pred             -HHHHHHhhcC
Q psy10604        201 -DIASSAITDA  210 (225)
Q Consensus       201 -~i~~~l~~~~  210 (225)
                       .++++|+..|
T Consensus       194 ~~iv~~Ll~~g  204 (256)
T 2etb_A          194 IHMYDGLLQMG  204 (256)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHcC
Confidence             2666666543

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.92  E-value=1.6e-24  Score=158.74  Aligned_cols=121  Identities=23%  Similarity=0.318  Sum_probs=111.7

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhhhhh
Q psy10604         68 PNTSFLRAARAGHLDKLRELLEA-GVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQ  146 (225)
Q Consensus        68 g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~~~~  146 (225)
                      +.|+||+|+..|+.+++++|++. +.+++..+ ..|.||||+ +..|+.+++++|++.|++++.++.             
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~-~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~-------------   66 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALN-RFGKTALQV-MMFGSTAIALELLKQGASPNVQDT-------------   66 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCC-TTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCT-------------
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccC-CCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCC-------------
Confidence            56899999999999999999998 44888888 899999999 999999999999999999998886             


Q ss_pred             hccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHHhhc
Q psy10604        147 KNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAITD  209 (225)
Q Consensus       147 ~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~~  209 (225)
                           .|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+. .++++|+..
T Consensus        67 -----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~-~~v~~Ll~~  123 (156)
T 1bd8_A           67 -----SGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHT-AVVSFLAAE  123 (156)
T ss_dssp             -----TSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCH-HHHHHHHTT
T ss_pred             -----CCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChH-HHHHHHHhc
Confidence                 899999999999999999999999999999999999999999999996 556666654

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.92  E-value=7.1e-25  Score=171.26  Aligned_cols=115  Identities=17%  Similarity=0.163  Sum_probs=87.4

Q ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhh
Q psy10604         64 CYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLN  143 (225)
Q Consensus        64 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~  143 (225)
                      .+..|.||||+|+..|+.+++++|++.|++++..+...|.||||+|+..|+.+++++|++.|++++.++.          
T Consensus       113 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~----------  182 (236)
T 1ikn_D          113 TNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTY----------  182 (236)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCT----------
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccC----------
Confidence            3455677777777777777777777777777766622677777777777777777777777777776664          


Q ss_pred             hhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCC--CCCCCCChHHHHHHHc
Q psy10604        144 IHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVD--ASTKKGNTALHIAALD  196 (225)
Q Consensus       144 ~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~--~~d~~g~tpL~~A~~~  196 (225)
                              .|+||||+|+..++.+++++|+++|++..  .++..|.||.+.+...
T Consensus       183 --------~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~  229 (236)
T 1ikn_D          183 --------QGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEF  229 (236)
T ss_dssp             --------TCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCCCC---
T ss_pred             --------CCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchHHHHhhhccc
Confidence                    89999999999999999999999999875  8899999998765543

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.92  E-value=6.6e-25  Score=172.89  Aligned_cols=112  Identities=33%  Similarity=0.448  Sum_probs=105.8

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhhh
Q psy10604         65 YSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNI  144 (225)
Q Consensus        65 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~~  144 (225)
                      +..|.||||+|+..|+.+++++|++ |++++..+ ..|.||||+|+..|+.+++++|++.|++++.++.           
T Consensus        42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d-~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~-----------  108 (244)
T 3ui2_A           42 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVD-ENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDM-----------  108 (244)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBC-TTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCS-----------
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcC-CCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCC-----------
Confidence            3468999999999999999999999 99999998 8999999999999999999999999999998873           


Q ss_pred             hhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHH
Q psy10604        145 HQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAAL  195 (225)
Q Consensus       145 ~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~  195 (225)
                            ..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.
T Consensus       109 ------~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~  153 (244)
T 3ui2_A          109 ------RGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELARE  153 (244)
T ss_dssp             ------SSCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             ------CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Confidence                  389999999999999999999999999999999999999999984

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.92  E-value=4.3e-24  Score=171.86  Aligned_cols=152  Identities=22%  Similarity=0.275  Sum_probs=129.8

Q ss_pred             CcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchh----
Q psy10604         61 CYDCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSK----  136 (225)
Q Consensus        61 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~----  136 (225)
                      ....+..|.||||+|+..|+.+++++|++.|++++..+ ..|.||||+|+..|+.+++++|++.|++++.++..+.    
T Consensus        52 ~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~  130 (285)
T 3d9h_A           52 LMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIIT-ADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLF  130 (285)
T ss_dssp             TCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEEC-TTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHH
T ss_pred             ccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcC-CCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHH
Confidence            34467889999999999999999999999999999998 8999999999999999999999999999998876332    


Q ss_pred             --------hHHHHhhhhhhcc--CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHH
Q psy10604        137 --------KLDNQLNIHQKNI--KNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSA  206 (225)
Q Consensus       137 --------~~~~~~~~~~~~~--d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l  206 (225)
                              .....+...+..+  +..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+. .++++|
T Consensus       131 ~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~-~~v~~L  209 (285)
T 3d9h_A          131 NACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQR-ACVKKL  209 (285)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCSSCSCTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCH-HHHHHH
T ss_pred             HHHHcCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcH-HHHHHH
Confidence                    2344444444443  45699999999999999999999999999999999999999999999996 566666


Q ss_pred             hhcCCCCc
Q psy10604        207 ITDATSLP  214 (225)
Q Consensus       207 ~~~~~~~~  214 (225)
                      +..+..++
T Consensus       210 l~~ga~~~  217 (285)
T 3d9h_A          210 LESGADVN  217 (285)
T ss_dssp             HHTTCCTT
T ss_pred             HHCCCCCC
Confidence            66665553

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.92  E-value=7.9e-25  Score=176.46  Aligned_cols=131  Identities=28%  Similarity=0.413  Sum_probs=120.0

Q ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhh
Q psy10604         64 CYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLN  143 (225)
Q Consensus        64 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~  143 (225)
                      .+.+|.||||.|+..|+.+++++|++.|++++..+ ..|.||||+|+..|+.+++++|++.|++++.++.          
T Consensus        36 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~----------  104 (299)
T 1s70_B           36 VKFDDGAVFLAACSSGDTEEVLRLLERGADINYAN-VDGLTALHQACIDDNVDMVKFLVENGANINQPDN----------  104 (299)
T ss_dssp             CEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBC-TTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----------
T ss_pred             cccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccC-CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCC----------
Confidence            45678899999999999999999999999999998 8999999999999999999999999999998886          


Q ss_pred             hhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHHhhcCCCC
Q psy10604        144 IHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAITDATSL  213 (225)
Q Consensus       144 ~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~~~~~~  213 (225)
                              .|+||||+|+..|+.+++++|+++|++++..|..|.||||+|+..++.+.+..++...+...
T Consensus       105 --------~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~  166 (299)
T 1s70_B          105 --------EGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDI  166 (299)
T ss_dssp             --------TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCH
T ss_pred             --------CCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCc
Confidence                    89999999999999999999999999999999999999999999998766666665555443

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.92  E-value=2.5e-24  Score=182.55  Aligned_cols=128  Identities=34%  Similarity=0.433  Sum_probs=75.4

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhhh
Q psy10604         65 YSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNI  144 (225)
Q Consensus        65 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~~  144 (225)
                      +..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|++.|++++..+.           
T Consensus        44 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~-----------  111 (437)
T 1n11_A           44 NVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKA-KDDQTPLHCAARIGHTNMVKLLLENNANPNLATT-----------  111 (437)
T ss_dssp             SSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCC-TTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCT-----------
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC-CCCCCHHHHHHHCCCHHHHHHHHhCCCCCCCCCC-----------
Confidence            3344455555555555555555555555555444 4455555555555555555555555555544443           


Q ss_pred             hhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHHhhcCCC
Q psy10604        145 HQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAITDATS  212 (225)
Q Consensus       145 ~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~~~~~  212 (225)
                             .|.||||+|+..|+.+++++|+++|++.+..+..|.||||+|+..|+. .++++|+..+..
T Consensus       112 -------~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~-~~v~~Ll~~g~~  171 (437)
T 1n11_A          112 -------AGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKV-RVAELLLERDAH  171 (437)
T ss_dssp             -------TCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCH-HHHHHHHHTTCC
T ss_pred             -------CCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCH-HHHHHHHhCCCC
Confidence                   677777777777777777777777777777777777777777777775 445555554443

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.92  E-value=7.6e-24  Score=165.34  Aligned_cols=149  Identities=21%  Similarity=0.254  Sum_probs=125.3

Q ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHH----cCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchh---
Q psy10604         64 CYSDPNTSFLRAARAGHLDKLRELLE----AGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSK---  136 (225)
Q Consensus        64 ~~~~g~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~---  136 (225)
                      .+.+|.||||+|+..|+.+++++|++    .|.+++..+ ..|.||||+|+..|+.+++++|++.|++++.++..+.   
T Consensus         5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l   83 (241)
T 1k1a_A            5 ADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYN-NLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAA   83 (241)
T ss_dssp             --CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCC-TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccc-ccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHH
Confidence            46889999999999999999999997    799999998 8999999999999999999999999999988775332   


Q ss_pred             ---------hHHHHhhhhh-------hccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCChHHHHHHHcCCh
Q psy10604        137 ---------KLDNQLNIHQ-------KNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDAST-KKGNTALHIAALDSLV  199 (225)
Q Consensus       137 ---------~~~~~~~~~~-------~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d-~~g~tpL~~A~~~~~~  199 (225)
                               .....+...+       ...+..|+||||+|+..++.+++++|+++|++++..+ ..|.||||+|+..|+.
T Consensus        84 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~  163 (241)
T 1k1a_A           84 HLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSL  163 (241)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCH
Confidence                     2333333332       3346789999999999999999999999999999998 7899999999999996


Q ss_pred             HHHHHHHhhcCCCCc
Q psy10604        200 TDIASSAITDATSLP  214 (225)
Q Consensus       200 ~~i~~~l~~~~~~~~  214 (225)
                       .++++|+..+..++
T Consensus       164 -~~v~~Ll~~g~~~~  177 (241)
T 1k1a_A          164 -SMVQLLLQHGANVN  177 (241)
T ss_dssp             -HHHHHHHHTTCCTT
T ss_pred             -HHHHHHHHcCCCCC
Confidence             56667777666654

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.92  E-value=6.5e-24  Score=179.97  Aligned_cols=148  Identities=27%  Similarity=0.302  Sum_probs=113.6

Q ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchh-------
Q psy10604         64 CYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSK-------  136 (225)
Q Consensus        64 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~-------  136 (225)
                      .+..|.||||+|+..|+.+++++|++.|++++..+ ..|.||||+|+..|+.+++++|++.|++++..+..+.       
T Consensus       208 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~  286 (437)
T 1n11_A          208 PAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAES-VQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVA  286 (437)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHH
Confidence            45667888888888888888888888888888777 7788888888888888888888888888777665322       


Q ss_pred             -----hHHHHhhhhhh---ccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHHhh
Q psy10604        137 -----KLDNQLNIHQK---NIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAIT  208 (225)
Q Consensus       137 -----~~~~~~~~~~~---~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~  208 (225)
                           .....+...+.   ..|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+. .++++|+.
T Consensus       287 ~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~-~iv~~Ll~  365 (437)
T 1n11_A          287 QEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHT-DIVTLLLK  365 (437)
T ss_dssp             HHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH-HHHHHHHH
T ss_pred             HcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChH-HHHHHHHH
Confidence                 23333433333   3356789999999999999999999999999999999999999999999985 56666666


Q ss_pred             cCCCC
Q psy10604        209 DATSL  213 (225)
Q Consensus       209 ~~~~~  213 (225)
                      .|+..
T Consensus       366 ~ga~~  370 (437)
T 1n11_A          366 NGASP  370 (437)
T ss_dssp             TTCCS
T ss_pred             CcCCC
Confidence            65544

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.92  E-value=9.7e-24  Score=168.15  Aligned_cols=132  Identities=27%  Similarity=0.391  Sum_probs=123.2

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCCHHHHHHHcCC----HHHHHHHHHCCCCCCCCCcchhhHH
Q psy10604         65 YSDPNTSFLRAARAGHLDKLRELLEA-GVDINTSNASDPNTSFLRAARAGH----LDKLRELLEAGVDINTSNATSKKLD  139 (225)
Q Consensus        65 ~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~g~t~Lh~A~~~~~----~~iv~~Ll~~g~~~~~~~~~~~~~~  139 (225)
                      +..|.||||+|+..|+.+++++|++. |++++..+ ..|.||||+|+..++    .+++++|++.|++++.++.      
T Consensus       145 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~------  217 (285)
T 1wdy_A          145 RKGGATALMDAAEKGHVEVLKILLDEMGADVNACD-NMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGE------  217 (285)
T ss_dssp             TCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCC-TTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCT------
T ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccC-CCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCC------
Confidence            57789999999999999999999997 99999998 899999999999999    9999999999999999886      


Q ss_pred             HHhhhhhhccCCCCCcHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCChHHHHHHHcCChHHHHHHHhhcCCCCchH
Q psy10604        140 NQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLK-GGCKVDASTKKGNTALHIAALDSLVTDIASSAITDATSLPCS  216 (225)
Q Consensus       140 ~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~-~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~~~~~~~~~  216 (225)
                                  .|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..|+. .++++|+..|+..++.
T Consensus       218 ------------~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~-~i~~~Ll~~Ga~~~~~  282 (285)
T 1wdy_A          218 ------------RGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLK-KIAELLCKRGASTDCG  282 (285)
T ss_dssp             ------------TSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCH-HHHHHHHHHSSCSCCS
T ss_pred             ------------CCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcH-HHHHHHHHcCCCCCcc
Confidence                        89999999999999999999999 7999999999999999999999995 6788888888877653

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.92  E-value=2.1e-23  Score=162.30  Aligned_cols=148  Identities=25%  Similarity=0.301  Sum_probs=122.2

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhh-------
Q psy10604         65 YSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKK-------  137 (225)
Q Consensus        65 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~-------  137 (225)
                      +..|.||||+|+..|+.+++++|++.|++++..+ ..|.||||+|+..|+.+++++|++.|++++..+..+..       
T Consensus        73 ~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~  151 (240)
T 3eu9_A           73 GDLNSTPLHWATRQGHLSMVVQLMKYGADPSLID-GEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAY  151 (240)
T ss_dssp             TTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCcCCChhHHHHHcCCHHHHHHHHHcCCCCcccC-CCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHH
Confidence            4558999999999999999999999999999988 88999999999999999999999999999887764332       


Q ss_pred             ------HHHHhhhhhhcc---CC-CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHHh
Q psy10604        138 ------LDNQLNIHQKNI---KN-NGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAI  207 (225)
Q Consensus       138 ------~~~~~~~~~~~~---d~-~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~  207 (225)
                            ....+...+..+   +. .|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..|+. .++++|+
T Consensus       152 ~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~-~~v~~L~  230 (240)
T 3eu9_A          152 RTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNV-WMINHLQ  230 (240)
T ss_dssp             HCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCH-HHHHHHH
T ss_pred             hCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcH-HHHHHHH
Confidence                  222333333332   33 788999999999999999999999999999999999999999999995 6777777


Q ss_pred             hcCCCCc
Q psy10604        208 TDATSLP  214 (225)
Q Consensus       208 ~~~~~~~  214 (225)
                      ..++...
T Consensus       231 ~~~~~~~  237 (240)
T 3eu9_A          231 EARQAKG  237 (240)
T ss_dssp             HHC----
T ss_pred             HhhhccC
Confidence            7665544

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.92  E-value=2.8e-23  Score=170.35  Aligned_cols=151  Identities=21%  Similarity=0.230  Sum_probs=126.1

Q ss_pred             cccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchh-----
Q psy10604         62 YDCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSK-----  136 (225)
Q Consensus        62 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~-----  136 (225)
                      ...+..|.||||+|+..|+.+++++|++.|++++..+ ..|.||||+|+..|+.+++++|++.|++++..+..+.     
T Consensus        52 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~  130 (351)
T 3utm_A           52 HASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKD-KGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHE  130 (351)
T ss_dssp             CCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred             ccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccC-CCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence            3457789999999999999999999999999999998 8999999999999999999999999999998875332     


Q ss_pred             -------hHHHHhhhhhhc---------------------------------------------------------cCCC
Q psy10604        137 -------KLDNQLNIHQKN---------------------------------------------------------IKNN  152 (225)
Q Consensus       137 -------~~~~~~~~~~~~---------------------------------------------------------~d~~  152 (225)
                             +...++...+..                                                         .+..
T Consensus       131 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  210 (351)
T 3utm_A          131 AASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQS  210 (351)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTT
T ss_pred             HHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCC
Confidence                   233333333322                                                         2356


Q ss_pred             CCcHHHHHHHc---CCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHHhhcCCCCc
Q psy10604        153 GLNALHLAAKD---GHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAITDATSLP  214 (225)
Q Consensus       153 g~t~L~~A~~~---~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~~~~~~~  214 (225)
                      |.||||+|+..   +..+++++|+++|++++.+|..|+||||+|+..|+. .++++|+..+..++
T Consensus       211 ~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~-~~v~~Ll~~ga~~n  274 (351)
T 3utm_A          211 HETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHN-DVMEVLHKHGAKMN  274 (351)
T ss_dssp             CCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCH-HHHHHHHHTTCCTT
T ss_pred             CCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCH-HHHHHHHHCCCCCC
Confidence            78999999998   558999999999999999999999999999999996 56777777666553

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.92  E-value=3.3e-24  Score=177.81  Aligned_cols=142  Identities=23%  Similarity=0.183  Sum_probs=87.4

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcch---------
Q psy10604         65 YSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATS---------  135 (225)
Q Consensus        65 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~---------  135 (225)
                      +.+|.||||+|+..|+.++|++|++.|++++..+ ..|.||||+|+..|+.+++++|++.|++++..+...         
T Consensus        17 d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g   95 (364)
T 3ljn_A           17 DDENMEKIHVAARKGQTDEVRRLIETGVSPTIQN-RFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMAN   95 (364)
T ss_dssp             CHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCC-TTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccC-CCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHHHHHcC
Confidence            4556777777777777777777777777777766 667777777777777777777777776655432211         


Q ss_pred             -hhHHHHhhhh----hhc--------------------cCCCCCcHHHHHHHcC--CHHHHHHHHHCCCCCCCCCCCCCh
Q psy10604        136 -KKLDNQLNIH----QKN--------------------IKNNGLNALHLAAKDG--HTTVVKALLKGGCKVDASTKKGNT  188 (225)
Q Consensus       136 -~~~~~~~~~~----~~~--------------------~d~~g~t~L~~A~~~~--~~~~~~~Ll~~ga~~~~~d~~g~t  188 (225)
                       ......+...    +..                    .|..|.||||+|+..|  +.+++++|+++|++++.+|..|.|
T Consensus        96 ~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t  175 (364)
T 3ljn_A           96 KTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADET  175 (364)
T ss_dssp             CHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCC
T ss_pred             CHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCC
Confidence             1122222222    110                    3445666777776666  666777776666666666666667


Q ss_pred             HHHHHHHcCChHHHHHHHhh
Q psy10604        189 ALHIAALDSLVTDIASSAIT  208 (225)
Q Consensus       189 pL~~A~~~~~~~~i~~~l~~  208 (225)
                      |||+|+..|+. .++++|+.
T Consensus       176 ~L~~A~~~g~~-~~v~~Ll~  194 (364)
T 3ljn_A          176 PLMRAMEFRNR-EALDLMMD  194 (364)
T ss_dssp             HHHHHHHTTCH-HHHHHHHH
T ss_pred             HHHHHHHcCCH-HHHHHHHh
Confidence            77766666664 34444443

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.91  E-value=1.1e-23  Score=167.83  Aligned_cols=128  Identities=24%  Similarity=0.304  Sum_probs=117.7

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhhhhh
Q psy10604         67 DPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQ  146 (225)
Q Consensus        67 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~~~~  146 (225)
                      +|.|+||+|+..|+.+++++|++.|++++...+..|.||||+|+..|+.+++++|++.|++++.++.             
T Consensus         4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~-------------   70 (285)
T 1wdy_A            4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKK-------------   70 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-------------
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCC-------------
Confidence            4789999999999999999999999999988548899999999999999999999999999998885             


Q ss_pred             hccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHHhhcCCCC
Q psy10604        147 KNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAITDATSL  213 (225)
Q Consensus       147 ~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~~~~~~  213 (225)
                           .|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+. .++++|+..+...
T Consensus        71 -----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~-~~~~~Ll~~g~~~  131 (285)
T 1wdy_A           71 -----NGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKV-KALKFLYKRGANV  131 (285)
T ss_dssp             -----TCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCH-HHHHHHHHTTCCT
T ss_pred             -----CCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCH-HHHHHHHHhCCCc
Confidence                 899999999999999999999999999999999999999999999996 5666666655443

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.91  E-value=8.9e-24  Score=176.18  Aligned_cols=151  Identities=22%  Similarity=0.257  Sum_probs=124.5

Q ss_pred             cccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC---CCCCCCCcc----
Q psy10604         62 YDCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG---VDINTSNAT----  134 (225)
Q Consensus        62 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g---~~~~~~~~~----  134 (225)
                      ...+..|.||||+|+..|+.+++++|++.|++++..+ ..|.||||+|+..|+.+++++|++.+   ++++..+..    
T Consensus       160 n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~  238 (373)
T 2fo1_E          160 NAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYN-KSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTA  238 (373)
T ss_dssp             TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCC-TTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCH
T ss_pred             cCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccC-CCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCH
Confidence            3457789999999999999999999999999999998 89999999999999999999999887   677766552    


Q ss_pred             -----------hhhHHHHhhhhhhcc-----------CCCCCcHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCChHHH
Q psy10604        135 -----------SKKLDNQLNIHQKNI-----------KNNGLNALHLAAKDGHTTVVKALLKGG-CKVDASTKKGNTALH  191 (225)
Q Consensus       135 -----------~~~~~~~~~~~~~~~-----------d~~g~t~L~~A~~~~~~~~~~~Ll~~g-a~~~~~d~~g~tpL~  191 (225)
                                 ......++...+..+           |..|+||||+|+..|+.+++++|+++| ++++.+|..|.||||
T Consensus       239 L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~  318 (373)
T 2fo1_E          239 LMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIM  318 (373)
T ss_dssp             HHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHH
T ss_pred             HHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHH
Confidence                       233444555555443           347899999999999999999999775 999999999999999


Q ss_pred             HHHHcCChHHHHHHHhhcCCCCc
Q psy10604        192 IAALDSLVTDIASSAITDATSLP  214 (225)
Q Consensus       192 ~A~~~~~~~~i~~~l~~~~~~~~  214 (225)
                      +|+..|+. .++++|+..|+.++
T Consensus       319 ~A~~~g~~-~iv~~Ll~~gad~~  340 (373)
T 2fo1_E          319 LAAQEGRI-EVVMYLIQQGASVE  340 (373)
T ss_dssp             HHHHHTCH-HHHHHHHHTTCCSS
T ss_pred             HHHHcCCH-HHHHHHHHcCCCcc
Confidence            99999996 56666766666553

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.91  E-value=6.6e-24  Score=142.46  Aligned_cols=93  Identities=46%  Similarity=0.709  Sum_probs=88.3

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhhhhh
Q psy10604         67 DPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQ  146 (225)
Q Consensus        67 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~~~~  146 (225)
                      +|.||||+|+..|+.+++++|++.|++++.++ ..|.||||+|+..|+.+++++|++.|++++.++.             
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d-~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~-------------   66 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKD-KNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK-------------   66 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-------------
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccC-CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCC-------------
Confidence            48899999999999999999999999999998 8999999999999999999999999999999886             


Q ss_pred             hccCCCCCcHHHHHHHcCCHHHHHHHHHCCCC
Q psy10604        147 KNIKNNGLNALHLAAKDGHTTVVKALLKGGCK  178 (225)
Q Consensus       147 ~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~  178 (225)
                           .|+||||+|+..|+.+++++|+++|++
T Consensus        67 -----~g~t~l~~A~~~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           67 -----NGRTPLHLAARNGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             -----TSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             -----CCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence                 899999999999999999999999985

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.91  E-value=9.9e-25  Score=171.22  Aligned_cols=127  Identities=24%  Similarity=0.310  Sum_probs=86.2

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhhhh
Q psy10604         66 SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIH  145 (225)
Q Consensus        66 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~~~  145 (225)
                      ..|.||||.|+..|+.+.++.|+++|++++..  ..|.||||+|+..|+.+++++|++.|++++.++.            
T Consensus         3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~--~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~------------   68 (239)
T 1ycs_B            3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN--PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPND------------   68 (239)
T ss_dssp             ------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCT------------
T ss_pred             ccccccCchhhhhhhHHHHHHHhccCCCcccC--chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCC------------
Confidence            45899999999999999999999999999864  5789999999999999999999999999999886            


Q ss_pred             hhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHHhhcCCCC
Q psy10604        146 QKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAITDATSL  213 (225)
Q Consensus       146 ~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~~~~~~  213 (225)
                            .|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+. .++++|+..++.+
T Consensus        69 ------~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~-~~v~~Ll~~ga~~  129 (239)
T 1ycs_B           69 ------EGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNV-QVCKFLVESGAAV  129 (239)
T ss_dssp             ------TSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCH-HHHHHHHHTTCCT
T ss_pred             ------CCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCH-HHHHHHHHcCCCc
Confidence                  899999999999999999999999999999999999999999999996 5666776666554

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.91  E-value=2.9e-24  Score=169.99  Aligned_cols=141  Identities=19%  Similarity=0.142  Sum_probs=111.3

Q ss_pred             CCCCchHHHHHH---HcCCHHHHHHHHHcCCC-----------CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC
Q psy10604         65 YSDPNTSFLRAA---RAGHLDKLRELLEAGVD-----------INTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINT  130 (225)
Q Consensus        65 ~~~g~t~L~~A~---~~g~~~~v~~Ll~~g~~-----------~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~  130 (225)
                      +..|.||||+|+   ..|+.+++++|++.|++           ++..+ ..|.||||+|+..|+.+++++|++.|++++.
T Consensus        43 ~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d-~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~  121 (260)
T 3jxi_A           43 PSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVY-YRGQTALHIAIERRCKHYVELLVEKGADVHA  121 (260)
T ss_dssp             TTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSS-EESBCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             cCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccc-cCCCCHHHHHHHcCCHHHHHHHHhCCCCcCc
Confidence            477999999999   67999999999998754           33333 4899999999999999999999999999998


Q ss_pred             CCcchhhHHHHhhhhhhccCCCCCcHHHHHHHcCCHHHHHHHHH---CCCCCCCCCCCCChHHHHHHHcCCh--------
Q psy10604        131 SNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLK---GGCKVDASTKKGNTALHIAALDSLV--------  199 (225)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~---~ga~~~~~d~~g~tpL~~A~~~~~~--------  199 (225)
                      .+.....    ........+..|+||||+|+..|+.+++++|++   +|++++.+|..|+||||+|+..|+.        
T Consensus       122 ~~~~~~~----~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~  197 (260)
T 3jxi_A          122 QARGRFF----QPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFV  197 (260)
T ss_dssp             CCEECCC----SSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHH
T ss_pred             ccccccc----CcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHH
Confidence            8720000    000000001279999999999999999999999   9999999999999999999987772        


Q ss_pred             HHHHHHHhhcC
Q psy10604        200 TDIASSAITDA  210 (225)
Q Consensus       200 ~~i~~~l~~~~  210 (225)
                      ..++++|+..|
T Consensus       198 ~~~v~~Ll~~g  208 (260)
T 3jxi_A          198 TKMYDLLLIKC  208 (260)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhC
Confidence            24556665543

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.91  E-value=1.5e-24  Score=177.87  Aligned_cols=131  Identities=16%  Similarity=0.159  Sum_probs=111.9

Q ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCC---HHHHHHHHHCC-CCCCCCCcchhhHH
Q psy10604         64 CYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGH---LDKLRELLEAG-VDINTSNATSKKLD  139 (225)
Q Consensus        64 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~---~~iv~~Ll~~g-~~~~~~~~~~~~~~  139 (225)
                      .+..|.||||+|+..|+.++|++|+++|++++..+ ..|.||||+|+..|+   .++++.|++.+ ++++.++.      
T Consensus       127 ~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d-~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~------  199 (327)
T 1sw6_A          127 VDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGD-NMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDS------  199 (327)
T ss_dssp             CSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCC-TTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECT------
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcC-CCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCC------
Confidence            57889999999999999999999999999999998 899999999999998   67888888875 66776664      


Q ss_pred             HHhhhhhhccCCCCCcHHHHHHH----cCCHHHHHHHHHCCC--------------------------------------
Q psy10604        140 NQLNIHQKNIKNNGLNALHLAAK----DGHTTVVKALLKGGC--------------------------------------  177 (225)
Q Consensus       140 ~~~~~~~~~~d~~g~t~L~~A~~----~~~~~~~~~Ll~~ga--------------------------------------  177 (225)
                                  .|+||||+|+.    .|+.+++++|++.++                                      
T Consensus       200 ------------~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~  267 (327)
T 1sw6_A          200 ------------MNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD  267 (327)
T ss_dssp             ------------TCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS
T ss_pred             ------------CCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH
Confidence                        89999999998    889999999887643                                      


Q ss_pred             -------CCCCCCCCCChHHHHHHHcCChHHHHHHHhhcCCCCc
Q psy10604        178 -------KVDASTKKGNTALHIAALDSLVTDIASSAITDATSLP  214 (225)
Q Consensus       178 -------~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~~~~~~~  214 (225)
                             +++.+|..|+||||+|+..|+. .++++|+..|+.++
T Consensus       268 ~~~Ll~~~~n~~d~~G~TpLh~A~~~g~~-~~v~~Ll~~Gad~~  310 (327)
T 1sw6_A          268 LKWIIANMLNAQDSNGDTCLNIAARLGNI-SIVDALLDYGADPF  310 (327)
T ss_dssp             HHHHHHHTTTCCCTTSCCHHHHHHHHCCH-HHHHHHHHTTCCTT
T ss_pred             HHHHHHhCCCCCCCCCCCHHHHHHHcCCH-HHHHHHHHcCCCCc
Confidence                   5788888999999999999996 56666666666553

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.91  E-value=5.8e-24  Score=169.65  Aligned_cols=141  Identities=22%  Similarity=0.183  Sum_probs=113.1

Q ss_pred             cCCCCchHHHHHHHc---CCHHHHHHHHHcCCCC-------CC----CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Q psy10604         64 CYSDPNTSFLRAARA---GHLDKLRELLEAGVDI-------NT----SNASDPNTSFLRAARAGHLDKLRELLEAGVDIN  129 (225)
Q Consensus        64 ~~~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~-------~~----~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~  129 (225)
                      .+..|.||||+|+..   |+.+++++|++.|+++       +.    .+ ..|.||||+|+..|+.+++++|++.|++++
T Consensus        50 ~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d-~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~  128 (273)
T 2pnn_A           50 DPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSY-YKGQTALHIAIERRNMTLVTLLVENGADVQ  128 (273)
T ss_dssp             CTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTT-TTTCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             cCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhccccccc-CCCCCHHHHHHHcCCHHHHHHHHHCCCCcC
Confidence            367899999999987   9999999999998653       22    34 689999999999999999999999999999


Q ss_pred             CCCcchhhHHHHhhhhhhccCCCCCcHHHHHHHcCCHHHHHHHHH---CCCCCCCCCCCCChHHHHHHHcCCh-------
Q psy10604        130 TSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLK---GGCKVDASTKKGNTALHIAALDSLV-------  199 (225)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~---~ga~~~~~d~~g~tpL~~A~~~~~~-------  199 (225)
                      .++....    .........+..|+||||+|+..|+.+++++|++   +|++++.+|..|+||||+|+..|+.       
T Consensus       129 ~~~~~~~----~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~  204 (273)
T 2pnn_A          129 AAANGDF----FKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKF  204 (273)
T ss_dssp             CCBCSGG----GSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHH
T ss_pred             ccccccc----cccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHH
Confidence            8774110    0000001112369999999999999999999999   9999999999999999999998872       


Q ss_pred             -HHHHHHHhhc
Q psy10604        200 -TDIASSAITD  209 (225)
Q Consensus       200 -~~i~~~l~~~  209 (225)
                       ..++++|+..
T Consensus       205 ~~~~v~~Ll~~  215 (273)
T 2pnn_A          205 VTSMYNEILIL  215 (273)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence             2455566543

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.91  E-value=3.8e-23  Score=165.97  Aligned_cols=125  Identities=19%  Similarity=0.264  Sum_probs=112.8

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHcCCCCCC------CCCCCCCCHHHHHHHc---CCHHHHHHHHHCCCCCCCCCcchhhH
Q psy10604         68 PNTSFLRAARAGHLDKLRELLEAGVDINT------SNASDPNTSFLRAARA---GHLDKLRELLEAGVDINTSNATSKKL  138 (225)
Q Consensus        68 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~------~~~~~g~t~Lh~A~~~---~~~~iv~~Ll~~g~~~~~~~~~~~~~  138 (225)
                      ..++|+.|+..|+.+.++.++..|.+++.      .+ ..|.||||+|+..   |+.+++++|++.|++++.++.     
T Consensus       130 ~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~-~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~-----  203 (278)
T 1dcq_A          130 KLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGH-EPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTG-----  203 (278)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCS-STTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCT-----
T ss_pred             hhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccc-cCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCC-----
Confidence            35789999999999999999999999543      35 7899999999999   899999999999999999886     


Q ss_pred             HHHhhhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHHhhcCCC
Q psy10604        139 DNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAITDATS  212 (225)
Q Consensus       139 ~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~~~~~  212 (225)
                                   .|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+. .++++|+..++.
T Consensus       204 -------------~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~-~~v~~Ll~~ga~  263 (278)
T 1dcq_A          204 -------------KGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHE-HCEELLTQALSG  263 (278)
T ss_dssp             -------------TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH-HHHHHHHHHHTT
T ss_pred             -------------CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCH-HHHHHHHHcCCC
Confidence                         999999999999999999999999999999999999999999999996 556666665544

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.91  E-value=5.2e-23  Score=160.09  Aligned_cols=150  Identities=22%  Similarity=0.250  Sum_probs=107.1

Q ss_pred             ccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchh------
Q psy10604         63 DCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSK------  136 (225)
Q Consensus        63 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~------  136 (225)
                      ..+..|.||||+|+..|+.+++++|++.|.+++......|.||||+|+..|+.+++++|++.|++++.++..+.      
T Consensus        37 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A  116 (240)
T 3eu9_A           37 QPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLA  116 (240)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHH
Confidence            34678999999999999999999999999999877756699999999999999999999999999988765221      


Q ss_pred             ------hHHHHhhhhhh---ccCCCCCcHHHHHHHcCC-HHHHHHHHHCCCCCCCCCC-CCChHHHHHHHcCChHHHHHH
Q psy10604        137 ------KLDNQLNIHQK---NIKNNGLNALHLAAKDGH-TTVVKALLKGGCKVDASTK-KGNTALHIAALDSLVTDIASS  205 (225)
Q Consensus       137 ------~~~~~~~~~~~---~~d~~g~t~L~~A~~~~~-~~~~~~Ll~~ga~~~~~d~-~g~tpL~~A~~~~~~~~i~~~  205 (225)
                            +....+...+.   ..+..|.||||+|+..++ .+++++|+..|++++..+. .|.||||+|+..|+. .++++
T Consensus       117 ~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~-~~v~~  195 (240)
T 3eu9_A          117 AQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNT-TVISL  195 (240)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCH-HHHHH
T ss_pred             HHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCH-HHHHH
Confidence                  22233333222   234566666666665544 5666666666666666665 666777777666664 34445


Q ss_pred             HhhcCCCC
Q psy10604        206 AITDATSL  213 (225)
Q Consensus       206 l~~~~~~~  213 (225)
                      |+..|...
T Consensus       196 Ll~~g~~~  203 (240)
T 3eu9_A          196 LLEAGANV  203 (240)
T ss_dssp             HHHHTCCT
T ss_pred             HHHcCCCC
Confidence            55544444

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.90  E-value=1.7e-23  Score=169.75  Aligned_cols=126  Identities=21%  Similarity=0.244  Sum_probs=114.4

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHHcCCCCCC------CCCCCCCCHHHHHHHc---CCHHHHHHHHHCCCCCCCCCcchh
Q psy10604         66 SDPNTSFLRAARAGHLDKLRELLEAGVDINT------SNASDPNTSFLRAARA---GHLDKLRELLEAGVDINTSNATSK  136 (225)
Q Consensus        66 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~------~~~~~g~t~Lh~A~~~---~~~~iv~~Ll~~g~~~~~~~~~~~  136 (225)
                      ....++|+.|+..|+.+.+++|++.|++++.      .+ ..|.||||+|+..   ++.+++++|++.|++++.++.   
T Consensus       149 ~~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~-~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~---  224 (301)
T 2b0o_E          149 TPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQ-APEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAA---  224 (301)
T ss_dssp             C-CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSC-SCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCT---
T ss_pred             CchHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccC-CCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCC---
Confidence            3456789999999999999999999999988      45 8899999999998   899999999999999999886   


Q ss_pred             hHHHHhhhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHHhhcCC
Q psy10604        137 KLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAITDAT  211 (225)
Q Consensus       137 ~~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~~~~  211 (225)
                                     .|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+. .++++|+..++
T Consensus       225 ---------------~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~-~iv~~Ll~~ga  283 (301)
T 2b0o_E          225 ---------------DGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHK-ECEELLEQAQA  283 (301)
T ss_dssp             ---------------TCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCH-HHHHHHHHHHH
T ss_pred             ---------------CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCH-HHHHHHHHhcC
Confidence                           999999999999999999999999999999999999999999999996 56666665543

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.90  E-value=2e-23  Score=174.08  Aligned_cols=146  Identities=18%  Similarity=0.232  Sum_probs=108.8

Q ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHHcC---CCCCCCCCCCCCCHHHHHHHcC---CHHHHHHHHHCCCCCCCCC-----
Q psy10604         64 CYSDPNTSFLRAARAGHLDKLRELLEAG---VDINTSNASDPNTSFLRAARAG---HLDKLRELLEAGVDINTSN-----  132 (225)
Q Consensus        64 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g---~~~~~~~~~~g~t~Lh~A~~~~---~~~iv~~Ll~~g~~~~~~~-----  132 (225)
                      .+..|.||||+|+..|+.+++++|++.+   ++++..+ ..|.||||+|+..+   +.+++++|++.|++++..+     
T Consensus       195 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d-~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~  273 (373)
T 2fo1_E          195 YNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELD-RNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKD  273 (373)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCC-TTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTS
T ss_pred             cCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcC-CCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccC
Confidence            4566777777777777777777777766   6777776 67777777777776   6777777777777766421     


Q ss_pred             ---c------------chhhHHHHhhhh----hhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHH
Q psy10604        133 ---A------------TSKKLDNQLNIH----QKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIA  193 (225)
Q Consensus       133 ---~------------~~~~~~~~~~~~----~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A  193 (225)
                         .            .......++...    .+..|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|
T Consensus       274 ~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A  353 (373)
T 2fo1_E          274 SEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLA  353 (373)
T ss_dssp             SSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHH
T ss_pred             cccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHH
Confidence               1            111233333322    233457999999999999999999999999999999999999999999


Q ss_pred             HHcCChHHHHHHHhhcCC
Q psy10604        194 ALDSLVTDIASSAITDAT  211 (225)
Q Consensus       194 ~~~~~~~~i~~~l~~~~~  211 (225)
                      +..|+. .++++|++.++
T Consensus       354 ~~~g~~-~iv~~Ll~~~a  370 (373)
T 2fo1_E          354 QANNHH-NIVDIFDRCRP  370 (373)
T ss_dssp             HHTTCH-HHHHHHHTTC-
T ss_pred             HHcCCH-HHHHHHHhcCc
Confidence            999995 67777776654

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.90  E-value=4.7e-23  Score=169.11  Aligned_cols=130  Identities=26%  Similarity=0.362  Sum_probs=91.0

Q ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCCCHHHHHHHcCC----HHHHHHHHHCCCCCCCCCcchhhH
Q psy10604         64 CYSDPNTSFLRAARAGHLDKLRELLE-AGVDINTSNASDPNTSFLRAARAGH----LDKLRELLEAGVDINTSNATSKKL  138 (225)
Q Consensus        64 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~~g~t~Lh~A~~~~~----~~iv~~Ll~~g~~~~~~~~~~~~~  138 (225)
                      .+..|.||||+|+..|+.+++++|++ .|++++..+ ..|.|+||+++..+.    ..++++|++.|++++.++.     
T Consensus       164 ~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d-~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~-----  237 (337)
T 4g8k_A          164 LRKGGATALMDAAEKGHVEVLKILLDEMGADVNACD-NMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGE-----  237 (337)
T ss_dssp             CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCC-TTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCG-----
T ss_pred             ccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccC-CCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCC-----
Confidence            45678999999999999999999996 599999998 899999999887654    4688999999999999886     


Q ss_pred             HHHhhhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCChHHHHHHHcCChHHHHHHHhhcCCCC
Q psy10604        139 DNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKG-GCKVDASTKKGNTALHIAALDSLVTDIASSAITDATSL  213 (225)
Q Consensus       139 ~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~-ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~~~~~~  213 (225)
                                   .|+||||+|+..|+.++++.|+.. |++++.+|..|+||||+|+..|+. .++++|+..|+..
T Consensus       238 -------------~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~-~iv~~Ll~~GAd~  299 (337)
T 4g8k_A          238 -------------RGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLK-KIAELLCKRGAST  299 (337)
T ss_dssp             -------------GGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCH-HHHHHHHTTSCSS
T ss_pred             -------------CCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCH-HHHHHHHHCCCCC
Confidence                         455555555555555555555543 455555555555555555555553 3344444444433

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.90  E-value=3.8e-23  Score=171.87  Aligned_cols=122  Identities=27%  Similarity=0.373  Sum_probs=112.6

Q ss_pred             CCchHHHHHHHc-CCHHHHHHHHHcCCCCCCCCC-CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhhh
Q psy10604         67 DPNTSFLRAARA-GHLDKLRELLEAGVDINTSNA-SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNI  144 (225)
Q Consensus        67 ~g~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~~~-~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~~  144 (225)
                      .+.|+||+|+.. |+.+++++|++.|++++..+. ..|.||||+|+..|+.+++++|++.|++++.++.           
T Consensus       198 ~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~-----------  266 (368)
T 3jue_A          198 HPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADS-----------  266 (368)
T ss_dssp             CHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-----------
T ss_pred             CCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCC-----------
Confidence            346799999999 999999999999999998762 6899999999999999999999999999999886           


Q ss_pred             hhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHH
Q psy10604        145 HQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSA  206 (225)
Q Consensus       145 ~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l  206 (225)
                             .|+||||+|+..|+.+++++|+.+|++++.+|..|.||||+|+..|+.+.+..++
T Consensus       267 -------~G~TpLh~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl  321 (368)
T 3jue_A          267 -------AGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLR  321 (368)
T ss_dssp             -------TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             -------CCCCHHHHHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHH
Confidence                   9999999999999999999999999999999999999999999999976554444

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.90  E-value=5.1e-24  Score=148.41  Aligned_cols=108  Identities=34%  Similarity=0.521  Sum_probs=100.8

Q ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhh
Q psy10604         64 CYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLN  143 (225)
Q Consensus        64 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~  143 (225)
                      .+.+|.||||+|+..|+.+++++|++.|++++..+ ..|.||||+|+..++.+++++|++.|++++.++.          
T Consensus         5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d-~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~----------   73 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARS-KDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSK----------   73 (115)
T ss_dssp             CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCC-SSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCT----------
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC-CCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCC----------
Confidence            36789999999999999999999999999999998 8999999999999999999999999999998886          


Q ss_pred             hhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHH
Q psy10604        144 IHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTAL  190 (225)
Q Consensus       144 ~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL  190 (225)
                              .|+||||+|+..++.+++++|+++|++++.++..|.+|-
T Consensus        74 --------~g~tpl~~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           74 --------DGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             --------TCCCTTHHHHTTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred             --------CCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence                    899999999999999999999999999999999999884

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.89  E-value=1.3e-22  Score=136.08  Aligned_cols=92  Identities=41%  Similarity=0.656  Sum_probs=84.1

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhhhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCC
Q psy10604        101 DPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVD  180 (225)
Q Consensus       101 ~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~  180 (225)
                      .|+||||+|+..|+.+++++|++.|++++.++.                  .|+||||+|+..++.+++++|+++|++++
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~------------------~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~   62 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK------------------NGRTPLHLAARNGHLEVVKLLLEAGADVN   62 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT------------------TSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCC------------------CCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            489999999999999999999999999999886                  99999999999999999999999999999


Q ss_pred             CCCCCCChHHHHHHHcCChHHHHHHHhhcCC
Q psy10604        181 ASTKKGNTALHIAALDSLVTDIASSAITDAT  211 (225)
Q Consensus       181 ~~d~~g~tpL~~A~~~~~~~~i~~~l~~~~~  211 (225)
                      .+|..|.||||+|+..|+. .++++|+..|+
T Consensus        63 ~~d~~g~t~l~~A~~~~~~-~~~~~Ll~~ga   92 (93)
T 1n0q_A           63 AKDKNGRTPLHLAARNGHL-EVVKLLLEAGA   92 (93)
T ss_dssp             CCCTTSCCHHHHHHHTTCH-HHHHHHHHTTC
T ss_pred             ccCCCCCCHHHHHHHcCCH-HHHHHHHHcCC
Confidence            9999999999999999996 56667776654

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.89  E-value=1.2e-24  Score=169.95  Aligned_cols=130  Identities=16%  Similarity=0.120  Sum_probs=110.8

Q ss_pred             ccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHh
Q psy10604         63 DCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQL  142 (225)
Q Consensus        63 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~  142 (225)
                      ..+..|.||||+|+..|+.+++++|++.|++++..+ ..|.||||+|+..|+.+++++|++.|++++.++.         
T Consensus        49 ~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d-~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~---------  118 (229)
T 2vge_A           49 QPNEEGITALHNAICGANYSIVDFLITAGANVNSPD-SHGWTPLHCAASCNDTVICMALVQHGAAIFATTL---------  118 (229)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCS---------
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccC---------
Confidence            357889999999999999999999999999999998 8999999999999999999999999999998763         


Q ss_pred             hhhhhccCCCCCcHHHHH--HHcCCHHHHHHHHHCCCCCCC--------------------------------CCCCCCh
Q psy10604        143 NIHQKNIKNNGLNALHLA--AKDGHTTVVKALLKGGCKVDA--------------------------------STKKGNT  188 (225)
Q Consensus       143 ~~~~~~~d~~g~t~L~~A--~~~~~~~~~~~Ll~~ga~~~~--------------------------------~d~~g~t  188 (225)
                              ..|+||||+|  +..|+.+++++|+++|++++.                                +|..|+|
T Consensus       119 --------~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~ll~~ga~~~~~~~d~~G~T  190 (229)
T 2vge_A          119 --------SDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDELSFREGESVTVLRRDGPEET  190 (229)
T ss_dssp             --------STTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSCBCCSSTTBCCBCTTCEEEEEESSCTTCS
T ss_pred             --------CCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHHHhhccccccCccccccccccccCCCccc
Confidence                    3899999999  999999999999997766543                                4566777


Q ss_pred             HHHHHHHcCChHHHHHHHhhcC
Q psy10604        189 ALHIAALDSLVTDIASSAITDA  210 (225)
Q Consensus       189 pL~~A~~~~~~~~i~~~l~~~~  210 (225)
                      |||+|+..|+.+.|...++...
T Consensus       191 pL~~A~~~g~~~~v~~~~l~~~  212 (229)
T 2vge_A          191 DWWWAALHGQEGYVPRNYFGLF  212 (229)
T ss_dssp             SEEEEEETTEEEEEEGGGEESS
T ss_pred             HHHHHHHcCCcceeehhhhhhC
Confidence            7777777777655555444433

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.88  E-value=6.1e-23  Score=150.64  Aligned_cols=111  Identities=24%  Similarity=0.200  Sum_probs=89.2

Q ss_pred             ccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCC-HHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHH
Q psy10604         63 DCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNT-SFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQ  141 (225)
Q Consensus        63 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t-~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~  141 (225)
                      ..+..|.||||+|+ .|+.+++++|++.|++++..+ ..|.| |||+|+..|+.+++++|++.|++++.++.        
T Consensus        40 ~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d-~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~--------  109 (156)
T 1bi7_B           40 APNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCAD-PATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDA--------  109 (156)
T ss_dssp             CCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCC-TTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCT--------
T ss_pred             CCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcC-CCCCcHHHHHHHHCCCHHHHHHHHHcCCCCcccCC--------
Confidence            35678999999986 999999999999999999998 88998 99999999999999999999999999886        


Q ss_pred             hhhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHH
Q psy10604        142 LNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIA  193 (225)
Q Consensus       142 ~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A  193 (225)
                                .|+||||+|+..|+.+++++|+++|++++.++..|.||.+-+
T Consensus       110 ----------~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B          110 ----------WGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             ----------TCCCHHHHHHHHTCHHHHHHHSSCC-----------------
T ss_pred             ----------CCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccccC
Confidence                      899999999999999999999999999999999999998743

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.88  E-value=7.6e-23  Score=165.97  Aligned_cols=111  Identities=21%  Similarity=0.197  Sum_probs=97.9

Q ss_pred             cCCCCchHHHHHHHc---CCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHH
Q psy10604         64 CYSDPNTSFLRAARA---GHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDN  140 (225)
Q Consensus        64 ~~~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~  140 (225)
                      .+..|.||||+|+..   |+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|++.|++++.++.       
T Consensus       186 ~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d-~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~-------  257 (301)
T 2b0o_E          186 AQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKA-ADGNTALHYAALYNQPDCLKLLLKGRALVGTVNE-------  257 (301)
T ss_dssp             SCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCC-TTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCT-------
T ss_pred             cCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCC-CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC-------
Confidence            467899999999997   89999999999999999998 8999999999999999999999999999999886       


Q ss_pred             HhhhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCh
Q psy10604        141 QLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLV  199 (225)
Q Consensus       141 ~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~  199 (225)
                                 .|.||||+|+..++.+++++|+++|++      .|.||||+|+..|+.
T Consensus       258 -----------~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          258 -----------AGETALDIARKKHHKECEELLEQAQAG------TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             -----------TSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC--------
T ss_pred             -----------CCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhHHHHhcCCc
Confidence                       999999999999999999999999887      588999999998873

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.87  E-value=2.1e-22  Score=161.30  Aligned_cols=144  Identities=24%  Similarity=0.286  Sum_probs=118.3

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHcCCC--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC-CCCCCCcchhh-------
Q psy10604         68 PNTSFLRAARAGHLDKLRELLEAGVD--INTSNASDPNTSFLRAARAGHLDKLRELLEAGV-DINTSNATSKK-------  137 (225)
Q Consensus        68 g~t~L~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~-~~~~~~~~~~~-------  137 (225)
                      +.+++|.|+..|+.+.++.++..+.+  ++..+ ..|.||||+|+..|+.+++++|++.|+ +++..+..+..       
T Consensus        76 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d-~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~  154 (276)
T 4hbd_A           76 CRSDAHPELVRRHLVTFRAMSARLLDYVVNIAD-SNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTAL  154 (276)
T ss_dssp             HSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCC-TTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGG
T ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCC-CCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHH
Confidence            35678999999999999999987766  78888 899999999999999999999999998 88877764332       


Q ss_pred             ----------HHHHhhhhhhc---cCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHH
Q psy10604        138 ----------LDNQLNIHQKN---IKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIAS  204 (225)
Q Consensus       138 ----------~~~~~~~~~~~---~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~  204 (225)
                                ....+...+..   .+..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+. .+++
T Consensus       155 ~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~-~iv~  233 (276)
T 4hbd_A          155 ATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHK-EIAG  233 (276)
T ss_dssp             CCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH-HHHH
T ss_pred             HHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCH-HHHH
Confidence                      22223333322   356799999999999999999999999999999999999999999999996 5566


Q ss_pred             HHhh-cCCCC
Q psy10604        205 SAIT-DATSL  213 (225)
Q Consensus       205 ~l~~-~~~~~  213 (225)
                      +|+. .++.+
T Consensus       234 ~Ll~~~gad~  243 (276)
T 4hbd_A          234 LLLAVPSCDI  243 (276)
T ss_dssp             HHHTSTTCCT
T ss_pred             HHHhcCCCCC
Confidence            6665 55544

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.87  E-value=6.9e-23  Score=167.94  Aligned_cols=134  Identities=18%  Similarity=0.132  Sum_probs=104.5

Q ss_pred             ccCCCCchHHHHHHHcCC---HHHHHHHHHcC-CCCCCCCCCCCCCHHHHHHH----cCCHHHHHHHHHC----------
Q psy10604         63 DCYSDPNTSFLRAARAGH---LDKLRELLEAG-VDINTSNASDPNTSFLRAAR----AGHLDKLRELLEA----------  124 (225)
Q Consensus        63 ~~~~~g~t~L~~A~~~g~---~~~v~~Ll~~g-~~~~~~~~~~g~t~Lh~A~~----~~~~~iv~~Ll~~----------  124 (225)
                      ..+..|.||||+|+..|+   .++++.|++.+ ++++..+ ..|.||||+|+.    .|+.+++++|++.          
T Consensus       159 ~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d-~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~  237 (327)
T 1sw6_A          159 YGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILED-SMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQN  237 (327)
T ss_dssp             BCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEEC-TTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGG
T ss_pred             CcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCC-CCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccc
Confidence            357889999999999998   68888888876 6788888 899999999999    8999999999987          


Q ss_pred             ----------CCCCCCCCcchhhHHHH-------hhhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCC
Q psy10604        125 ----------GVDINTSNATSKKLDNQ-------LNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGN  187 (225)
Q Consensus       125 ----------g~~~~~~~~~~~~~~~~-------~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~  187 (225)
                                |++++.++..+...+..       +....+..|..|+||||+|+..|+.+++++|+++|++++.+|..|+
T Consensus       238 ~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~  317 (327)
T 1sw6_A          238 RPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGL  317 (327)
T ss_dssp             CCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             hHHHhhhhcccCCcccccccCCChhHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCC
Confidence                      77777776644332211       1224666788999999999999999999999999999999999999


Q ss_pred             hHHHHHHHcC
Q psy10604        188 TALHIAALDS  197 (225)
Q Consensus       188 tpL~~A~~~~  197 (225)
                      ||||+|+..|
T Consensus       318 TpL~~A~~~g  327 (327)
T 1sw6_A          318 RPVDFGAGLE  327 (327)
T ss_dssp             CGGGGTCC--
T ss_pred             CHHHHHHhcC
Confidence            9999998764

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.87  E-value=8e-23  Score=154.66  Aligned_cols=126  Identities=17%  Similarity=0.170  Sum_probs=107.5

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCH----HHHHHHHHCCCCCCCCCcchhhHHHHhh
Q psy10604         68 PNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHL----DKLRELLEAGVDINTSNATSKKLDNQLN  143 (225)
Q Consensus        68 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~----~iv~~Ll~~g~~~~~~~~~~~~~~~~~~  143 (225)
                      +.++|+.|+..|+.+.++.++..+.+  ..+...|+||||+|+..++.    +++++|++.|++++.++.          
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~--~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~----------   73 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGYE--DKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTK----------   73 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSSS--CHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCT----------
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCcc--cccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCC----------
Confidence            45789999999999999999998754  33325699999999999975    599999999999999986          


Q ss_pred             hhhhccCCCCCcHHHHHHHcCC------HHHHHHHHHCCCCCCCCCCCCC-hHHHHHHHcCChH----HHHHHHhh-cCC
Q psy10604        144 IHQKNIKNNGLNALHLAAKDGH------TTVVKALLKGGCKVDASTKKGN-TALHIAALDSLVT----DIASSAIT-DAT  211 (225)
Q Consensus       144 ~~~~~~d~~g~t~L~~A~~~~~------~~~~~~Ll~~ga~~~~~d~~g~-tpL~~A~~~~~~~----~i~~~l~~-~~~  211 (225)
                              .|+||||+|+..++      .+++++|+++|++++.+|..|+ ||||+|+..+..+    .++++|+. .|+
T Consensus        74 --------~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~ga  145 (186)
T 3t8k_A           74 --------EGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGL  145 (186)
T ss_dssp             --------TCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTC
T ss_pred             --------CCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCC
Confidence                    99999999999886      6889999999999999999999 9999999966532    36777777 665


Q ss_pred             CC
Q psy10604        212 SL  213 (225)
Q Consensus       212 ~~  213 (225)
                      .+
T Consensus       146 d~  147 (186)
T 3t8k_A          146 QL  147 (186)
T ss_dssp             CT
T ss_pred             CC
Confidence            55

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.86  E-value=4.5e-21  Score=137.47  Aligned_cols=102  Identities=29%  Similarity=0.382  Sum_probs=90.2

Q ss_pred             CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhhhhhhccCCCCCcHHHHHHHcCCHHHHH
Q psy10604         91 GVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVK  170 (225)
Q Consensus        91 g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~  170 (225)
                      |+|+ .++ ..|.||||+|+..|+.+++++|++.|++++.++.                  .|+||||+|+..++.++++
T Consensus         1 G~d~-~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~------------------~g~t~L~~A~~~~~~~~~~   60 (137)
T 3c5r_A            1 GIDP-FTN-HRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDH------------------AGWTPLHEACNHGHLKVVE   60 (137)
T ss_dssp             ---C-CCC-TTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCT------------------TSCCHHHHHHHTTCHHHHH
T ss_pred             CCCC-CcC-CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCC------------------CCCCHHHHHHHcCCHHHHH
Confidence            5666 555 8899999999999999999999999999998885                  8999999999999999999


Q ss_pred             HHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHHhhcCCCC
Q psy10604        171 ALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAITDATSL  213 (225)
Q Consensus       171 ~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~~~~~~  213 (225)
                      +|+++|++++.+|..|.||||+|+..|+. .++++|+..++..
T Consensus        61 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~-~~v~~Ll~~ga~~  102 (137)
T 3c5r_A           61 LLLQHKALVNTTGYQNDSPLHDAAKNGHV-DIVKLLLSYGASR  102 (137)
T ss_dssp             HHHHTTCCTTCCCGGGCCHHHHHHHTTCH-HHHHHHHHTTCCT
T ss_pred             HHHHcCCcccCcCCCCCCHHHHHHHcCCH-HHHHHHHHcCCCC
Confidence            99999999999999999999999999996 5666666666554

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.85  E-value=1.7e-20  Score=134.34  Aligned_cols=95  Identities=27%  Similarity=0.346  Sum_probs=89.6

Q ss_pred             ccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHh
Q psy10604         63 DCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQL  142 (225)
Q Consensus        63 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~  142 (225)
                      ..+..|.||||+|+..|+.+++++|++.|++++..+ ..|.||||+|+..|+.+++++|++.|++++.++.         
T Consensus        42 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~---------  111 (136)
T 2jab_A           42 AKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVD-AIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDK---------  111 (136)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCC-TTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT---------
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCC-CCCCCHHHHHHHcCCHHHHHHHHHcCCCCcCcCC---------
Confidence            356789999999999999999999999999999998 8999999999999999999999999999998885         


Q ss_pred             hhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCC
Q psy10604        143 NIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGG  176 (225)
Q Consensus       143 ~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g  176 (225)
                               .|+||||+|+..++.+++++|+++|
T Consensus       112 ---------~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A          112 ---------FGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             ---------TSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             ---------CCCCHHHHHHHCCCHHHHHHHHHcC
Confidence                     8999999999999999999999876

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.85  E-value=1.9e-21  Score=139.37  Aligned_cols=96  Identities=23%  Similarity=0.247  Sum_probs=91.1

Q ss_pred             ccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC-CCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHH
Q psy10604         63 DCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASD-PNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQ  141 (225)
Q Consensus        63 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~-g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~  141 (225)
                      ..+..|.||||+|+. |+.+++++|++.|++++..+ .. |.||||+|+..|+.+++++|++.|++++.++.        
T Consensus        40 ~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~--------  109 (136)
T 1d9s_A           40 ALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCAD-PATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDA--------  109 (136)
T ss_dssp             CCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCB-TTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSS--------
T ss_pred             CcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCC--------
Confidence            346789999999999 99999999999999999998 77 99999999999999999999999999999886        


Q ss_pred             hhhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCC
Q psy10604        142 LNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCK  178 (225)
Q Consensus       142 ~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~  178 (225)
                                .|+||||+|+..++.+++++|+++|+|
T Consensus       110 ----------~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A          110 ----------WGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             ----------SSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             ----------CCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence                      999999999999999999999999986

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.85  E-value=3.2e-20  Score=130.34  Aligned_cols=96  Identities=45%  Similarity=0.668  Sum_probs=91.7

Q ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhh
Q psy10604         64 CYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLN  143 (225)
Q Consensus        64 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~  143 (225)
                      .+..|.||||+|+..|+.+++++|++.|++++..+ ..|.||||+|+..++.+++++|++.|++++.++.          
T Consensus        31 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~-~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~----------   99 (126)
T 1n0r_A           31 KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD-KNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK----------   99 (126)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----------
T ss_pred             cCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccC-CCCCcHHHHHHHcChHHHHHHHHHcCCCCcccCC----------
Confidence            46789999999999999999999999999999998 8999999999999999999999999999998885          


Q ss_pred             hhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCC
Q psy10604        144 IHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCK  178 (225)
Q Consensus       144 ~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~  178 (225)
                              .|.||||+|+..++.+++++|+++|++
T Consensus       100 --------~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A          100 --------NGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             --------TSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             --------CCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence                    899999999999999999999999986

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.84  E-value=2.3e-22  Score=167.64  Aligned_cols=129  Identities=19%  Similarity=0.118  Sum_probs=101.7

Q ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHHcCCCCC---CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHH
Q psy10604         64 CYSDPNTSFLRAARAGHLDKLRELLEAGVDIN---TSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDN  140 (225)
Q Consensus        64 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~---~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~  140 (225)
                      .+.++.||||+|+..|+.++|++|++.|+...   ..+ ..|.||||+|+..|+.+++++|++.|+++...+..      
T Consensus        88 ~g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~-~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~------  160 (376)
T 2aja_A           88 KGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQ-AENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQ------  160 (376)
T ss_dssp             HTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--C-HHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHS------
T ss_pred             cCCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhc-cCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccC------
Confidence            35667899999999999999999999988332   223 46789999999999999999999999864221110      


Q ss_pred             HhhhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCC--CCCCCChHHHHHH-HcCChHHHHHHHhhcC
Q psy10604        141 QLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDA--STKKGNTALHIAA-LDSLVTDIASSAITDA  210 (225)
Q Consensus       141 ~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~--~d~~g~tpL~~A~-~~~~~~~i~~~l~~~~  210 (225)
                                ..++||||+|+..|+.+++++|+++|++++.  .|..|.||||+|+ ..|+. .++++|+..+
T Consensus       161 ----------~~~~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~-eiv~~Ll~~g  222 (376)
T 2aja_A          161 ----------AENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHH-NVINFLLDCP  222 (376)
T ss_dssp             ----------HHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCH-HHHHHHTTSH
T ss_pred             ----------CCCCCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCH-HHHHHHHhCC
Confidence                      0127999999999999999999999999887  8888999999999 99996 5666666543

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.83  E-value=5e-20  Score=127.34  Aligned_cols=90  Identities=33%  Similarity=0.534  Sum_probs=85.0

Q ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhh
Q psy10604         64 CYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLN  143 (225)
Q Consensus        64 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~  143 (225)
                      .+.+|.|+||+|+..|+.+++++|++.|++++..+ ..|.||||+|+..|+.+++++|++.|++++.++.          
T Consensus        20 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d-~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~----------   88 (110)
T 2zgd_A           20 MGSDLGKKLLEAARAGQDDEVRILMANGADVAAKD-KNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDK----------   88 (110)
T ss_dssp             --CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCC-TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----------
T ss_pred             cCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccC-CCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccc----------
Confidence            47889999999999999999999999999999998 8999999999999999999999999999999886          


Q ss_pred             hhhhccCCCCCcHHHHHHHcCCHHHHHHH
Q psy10604        144 IHQKNIKNNGLNALHLAAKDGHTTVVKAL  172 (225)
Q Consensus       144 ~~~~~~d~~g~t~L~~A~~~~~~~~~~~L  172 (225)
                              .|+||||+|+..|+.+++++|
T Consensus        89 --------~g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           89 --------FGKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             --------TSCCHHHHHHHHTCHHHHHHH
T ss_pred             --------CCCcHHHHHHHcCCHHHHHHh
Confidence                    899999999999999999987

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.83  E-value=6.5e-20  Score=129.01  Aligned_cols=95  Identities=25%  Similarity=0.386  Sum_probs=85.7

Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhhhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCC
Q psy10604        100 SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKV  179 (225)
Q Consensus       100 ~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~  179 (225)
                      ..|.||||+|+..|+.+++++|++.|++++.++.                  .|+||||+|+..++.+++++|+++|+++
T Consensus         5 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~------------------~g~t~L~~A~~~~~~~~v~~Ll~~g~~~   66 (123)
T 3aaa_C            5 SMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLE------------------GGRKPLHYAADCGQLEILEFLLLKGADI   66 (123)
T ss_dssp             --CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCT------------------TSSCHHHHHHHTTCHHHHHHHHTTTCCT
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHcCCCcCccCC------------------CCCcHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            5688999999999999999999999999998885                  8999999999999999999999999999


Q ss_pred             CCCCCCCChHHHHHHHcCChHHHHHHHhhcCCCC
Q psy10604        180 DASTKKGNTALHIAALDSLVTDIASSAITDATSL  213 (225)
Q Consensus       180 ~~~d~~g~tpL~~A~~~~~~~~i~~~l~~~~~~~  213 (225)
                      +.+|..|+||||+|+..|+. .++++|+..+...
T Consensus        67 ~~~d~~g~tpL~~A~~~~~~-~~v~~Ll~~ga~~   99 (123)
T 3aaa_C           67 NAPDKHHITPLLSAVYEGHV-SCVKLLLSKGADK   99 (123)
T ss_dssp             TCCCTTSCCHHHHHHHHTCH-HHHHHHHHTTCCT
T ss_pred             CcCCCCCCCHHHHHHHcCCH-HHHHHHHHcCCCC
Confidence            99999999999999999996 5666666666554

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.83  E-value=6.5e-20  Score=147.09  Aligned_cols=96  Identities=17%  Similarity=0.191  Sum_probs=91.8

Q ss_pred             CCCCchHHHHHHHc---CCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHH
Q psy10604         65 YSDPNTSFLRAARA---GHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQ  141 (225)
Q Consensus        65 ~~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~  141 (225)
                      +..|.||||+|+..   |+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|++.|++++.++.        
T Consensus       166 ~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d-~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~--------  236 (278)
T 1dcq_A          166 HEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQT-GKGSTALHYCCLTDNAECLKLLLRGKASIEIANE--------  236 (278)
T ss_dssp             SSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCC-TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT--------
T ss_pred             ccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccC-CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccC--------
Confidence            67799999999999   89999999999999999998 8999999999999999999999999999999986        


Q ss_pred             hhhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCC
Q psy10604        142 LNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKV  179 (225)
Q Consensus       142 ~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~  179 (225)
                                .|.||||+|+..|+.+++++|+++|++.
T Consensus       237 ----------~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          237 ----------SGETPLDIAKRLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             ----------TSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             ----------CCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence                      9999999999999999999999998864

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.83  E-value=2.1e-20  Score=129.94  Aligned_cols=99  Identities=35%  Similarity=0.566  Sum_probs=90.9

Q ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhhhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCC
Q psy10604         97 SNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGG  176 (225)
Q Consensus        97 ~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g  176 (225)
                      ++ ..|.||||+|+..|+.+++++|++.|++++.++.                  .|+||||+|+..++.+++++|+++|
T Consensus         5 ~d-~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~------------------~g~t~L~~A~~~~~~~~~~~Ll~~g   65 (115)
T 2l6b_A            5 GS-KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSK------------------DGNTPLHLAAKNGHAEIVKLLLAKG   65 (115)
T ss_dssp             CS-CSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCS------------------SSCCTTHHHHTTTCHHHHHHHTTTT
T ss_pred             cC-CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC------------------CCCCHHHHHHHcCcHHHHHHHHHcC
Confidence            44 7899999999999999999999999999998885                  8999999999999999999999999


Q ss_pred             CCCCCCCCCCChHHHHHHHcCChHHHHHHHhhcCCCCch
Q psy10604        177 CKVDASTKKGNTALHIAALDSLVTDIASSAITDATSLPC  215 (225)
Q Consensus       177 a~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~~~~~~~~  215 (225)
                      ++++.+|..|.||||+|+..|+. .++++|+..|+.++.
T Consensus        66 ~~~~~~d~~g~tpl~~A~~~~~~-~~~~~Ll~~ga~~n~  103 (115)
T 2l6b_A           66 ADVNARSKDGNTPEHLAKKNGHH-EIVKLLDAKGADVNA  103 (115)
T ss_dssp             CCTTCCCTTCCCTTHHHHTTTCH-HHHHHHHTTSSSHHH
T ss_pred             CCCcccCCCCCCHHHHHHHCCCH-HHHHHHHHcCCCCCc
Confidence            99999999999999999999995 677788887776644

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.82  E-value=1.1e-19  Score=136.63  Aligned_cols=112  Identities=23%  Similarity=0.230  Sum_probs=98.3

Q ss_pred             CcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHH
Q psy10604         61 CYDCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDN  140 (225)
Q Consensus        61 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~  140 (225)
                      ....+..|.||||+|+..|+.+++++|++.|++++..++..|.||||+|+..|+.+++++|++.|++++.++.       
T Consensus        69 ~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~-------  141 (183)
T 3deo_A           69 VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDE-------  141 (183)
T ss_dssp             TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCT-------
T ss_pred             CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcCCCC-------
Confidence            3445788999999999999999999999999999988767899999999999999999999999999999886       


Q ss_pred             HhhhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHHhh
Q psy10604        141 QLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAIT  208 (225)
Q Consensus       141 ~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~  208 (225)
                                 .|+||||+|+..++.                 ..+.+||++|+..|+ ..++++|..
T Consensus       142 -----------~g~tpl~~A~~~~~~-----------------~~~~~~l~~a~~~~~-~~i~~~L~~  180 (183)
T 3deo_A          142 -----------RGLTALELAREILKT-----------------TPKGNPMQFGRRIGL-EKVINVLEG  180 (183)
T ss_dssp             -----------TSCCHHHHHHHHHHT-----------------CCCCSHHHHHHHHHH-HHHHHHHHT
T ss_pred             -----------CCCCHHHHHHHhccC-----------------cccccHHHHHHHcCH-HHHHHHHHH
Confidence                       999999999875422                 456799999999998 466666654

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.80  E-value=2.1e-19  Score=124.13  Aligned_cols=88  Identities=41%  Similarity=0.576  Sum_probs=82.1

Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhhhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCC
Q psy10604        100 SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKV  179 (225)
Q Consensus       100 ~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~  179 (225)
                      ..|.||||+|+..|+.+++++|++.|++++.++.                  .|+||||+|+..|+.+++++|+++|+++
T Consensus        22 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~------------------~g~tpLh~A~~~~~~~~v~~Ll~~ga~~   83 (110)
T 2zgd_A           22 SDLGKKLLEAARAGQDDEVRILMANGADVAAKDK------------------NGSTPLHLAARNGHLEVVKLLLEAGADV   83 (110)
T ss_dssp             CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCT------------------TCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             CccchHHHHHHHcCCHHHHHHHHHcCCCCCccCC------------------CCCCHHHHHHHcCCHHHHHHHHHcCCCc
Confidence            6899999999999999999999999999998885                  9999999999999999999999999999


Q ss_pred             CCCCCCCChHHHHHHHcCChHHHHHHH
Q psy10604        180 DASTKKGNTALHIAALDSLVTDIASSA  206 (225)
Q Consensus       180 ~~~d~~g~tpL~~A~~~~~~~~i~~~l  206 (225)
                      +.+|..|.||||+|+..|+.+ ++++|
T Consensus        84 ~~~d~~g~tpl~~A~~~~~~~-~~~~L  109 (110)
T 2zgd_A           84 XAQDKFGKTAFDISIDNGNED-LAEIL  109 (110)
T ss_dssp             TCCCTTSCCHHHHHHHHTCHH-HHHHH
T ss_pred             cccccCCCcHHHHHHHcCCHH-HHHHh
Confidence            999999999999999999964 44443

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.80  E-value=5.3e-22  Score=165.51  Aligned_cols=122  Identities=25%  Similarity=0.182  Sum_probs=103.7

Q ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHHcCCCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC--CCcchhhH
Q psy10604         64 CYSDPNTSFLRAARAGHLDKLRELLEAGVDI---NTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINT--SNATSKKL  138 (225)
Q Consensus        64 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~--~~~~~~~~  138 (225)
                      .+..|.||||+|+..|+.++|++|+++|+++   +... .. .||||+|+..|+.+++++|++.|++++.  .+.     
T Consensus       124 ~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~-~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~-----  196 (376)
T 2aja_A          124 IQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQA-EN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQA-----  196 (376)
T ss_dssp             -CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSH-HH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHH-----
T ss_pred             hccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCC-CC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCC-----
Confidence            3456789999999999999999999999762   3332 22 8999999999999999999999998765  554     


Q ss_pred             HHHhhhhhhccCCCCCcHHHHHH-HcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHHhhcCCCC
Q psy10604        139 DNQLNIHQKNIKNNGLNALHLAA-KDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAITDATSL  213 (225)
Q Consensus       139 ~~~~~~~~~~~d~~g~t~L~~A~-~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~~~~~~  213 (225)
                                   .|+||||+|+ ..|+.+++++|+++|++       |.|||++|+..|+.+ ++++|+.+++.+
T Consensus       197 -------------~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~-------~~taL~~Aa~~g~~e-vv~lL~~~ga~~  251 (376)
T 2aja_A          197 -------------ENYYAFRWAAVGRGHHNVINFLLDCPVM-------LAYAEIHEFEYGEKY-VNPFIARHVNRL  251 (376)
T ss_dssp             -------------HHHHHHHHHHSTTCCHHHHHHHTTSHHH-------HHHHHHCTTTTTTTT-HHHHHHHHHHHH
T ss_pred             -------------CCCCHHHHHHHHCCCHHHHHHHHhCCCc-------cchHHHHHHHCCCHH-HHHHHHhcCccc
Confidence                         7899999999 99999999999998753       899999999999976 888887766544

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.79  E-value=8.2e-19  Score=145.78  Aligned_cols=114  Identities=23%  Similarity=0.287  Sum_probs=88.7

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhhhh
Q psy10604         66 SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIH  145 (225)
Q Consensus        66 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~~~  145 (225)
                      ..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|++.|++++.++.            
T Consensus       233 ~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d-~~G~TpLh~A~~~g~~~~v~~LL~~Gad~~~~d~------------  299 (368)
T 3jue_A          233 QDNATPLIQATAANSLLACEFLLQNGANVNQAD-SAGRGPLHHATILGHTGLACLFLKRGADLGARDS------------  299 (368)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT------------
T ss_pred             cCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCC-CCCCCHHHHHHHcCcHHHHHHHHHCcCCCCCcCC------------
Confidence            789999999999999999999999999999998 8999999999999999999999999999999886            


Q ss_pred             hhccCCCCCcHHHHHHHcCCHHHHHHHHHCC---CCCCCCCCCCChHHHHHHHcCC
Q psy10604        146 QKNIKNNGLNALHLAAKDGHTTVVKALLKGG---CKVDASTKKGNTALHIAALDSL  198 (225)
Q Consensus       146 ~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g---a~~~~~d~~g~tpL~~A~~~~~  198 (225)
                            .|.||||+|+..++.+++++|+..|   ++....+..+.|+++++.....
T Consensus       300 ------~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~~~  349 (368)
T 3jue_A          300 ------EGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFSL  349 (368)
T ss_dssp             ------TSCCHHHHHHHTTCHHHHHHHHHHHC------------------------
T ss_pred             ------CCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHHHh
Confidence                  9999999999999999999999876   3345567778899988776544

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.79  E-value=1.5e-19  Score=139.81  Aligned_cols=107  Identities=20%  Similarity=0.216  Sum_probs=85.5

Q ss_pred             cccCCCCchHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHH
Q psy10604         62 YDCYSDPNTSFLRAARAGHLDKLRELLEA-GVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDN  140 (225)
Q Consensus        62 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~  140 (225)
                      ...+..|.||||+|+..|+.+++++|++. |++++..+ ..|.||||+|+..|+.+++++|++.|++++.++.       
T Consensus       100 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d-~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~-------  171 (222)
T 3ehr_A          100 NGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQN-KLGDTALHAAAWKGYADIVQLLLAKGARTDLRNI-------  171 (222)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCC-TTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCT-------
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccC-CCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccC-------
Confidence            33568899999999999999999999998 99999998 8999999999999999999999999999999886       


Q ss_pred             HhhhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCC
Q psy10604        141 QLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGN  187 (225)
Q Consensus       141 ~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~  187 (225)
                                 .|.||||+|+..+..++++.|+..|+.....+..+.
T Consensus       172 -----------~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~~  207 (222)
T 3ehr_A          172 -----------EKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDY  207 (222)
T ss_dssp             -----------TSCCHHHHCCSHHHHHHHC-----------------
T ss_pred             -----------CCCCHHHHhcchhHHHHHHHHhccchhhhccchhhh
Confidence                       999999999999999999999999999887776553

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.75  E-value=5.4e-18  Score=133.24  Aligned_cols=112  Identities=23%  Similarity=0.224  Sum_probs=98.3

Q ss_pred             CcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHH
Q psy10604         61 CYDCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDN  140 (225)
Q Consensus        61 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~  140 (225)
                      ....+..|.||||+|+..|+.+++++|++.|++++..++..|.||||+|+..|+.+++++|++.|++++.++.       
T Consensus        70 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~-------  142 (244)
T 3ui2_A           70 VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDE-------  142 (244)
T ss_dssp             TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-------
T ss_pred             CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCC-------
Confidence            3445788999999999999999999999999999998867899999999999999999999999999999886       


Q ss_pred             HhhhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHHhh
Q psy10604        141 QLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAIT  208 (225)
Q Consensus       141 ~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~  208 (225)
                                 .|+||||+|+..+.                 ...+.|||++|+..|+. .++++|..
T Consensus       143 -----------~g~t~l~~A~~~~~-----------------~~~~~~~l~~a~~~g~~-~iv~~L~~  181 (244)
T 3ui2_A          143 -----------RGLTALELAREILK-----------------TTPKGNPMQFGRRIGLE-KVINVLEG  181 (244)
T ss_dssp             -----------TCCCHHHHHHHHHT-----------------TCCCSSHHHHHHHHHHH-HHHHHHHH
T ss_pred             -----------CCCcHHHHHHHHHh-----------------ccCCCCHHHHHHHcChH-HHHHHHHH
Confidence                       99999999986322                 25688999999999995 46666655

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	225
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-16
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-14
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-14
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-13
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	7e-11
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-09
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-06
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-13
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-08
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	5e-08
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-05
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	4e-04
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-12
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-10
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-06
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	8e-11
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-09
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	8e-08
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	4e-07
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	4e-10
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-08
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-06
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	4e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	6e-04
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	0.002
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	8e-10
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	0.004
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	9e-10
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-06
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-05
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	3e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	4e-09
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-08
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-08
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-05
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-09
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-05
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-05
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-04
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	7e-09
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	7e-07
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	4e-06
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	8e-05
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-08
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-08
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	8e-07
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-06
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	5e-08
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	1e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-07
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-05
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	0.001
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	3e-07
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	3e-04
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	4e-04
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	4e-04
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	3e-06
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	1e-04
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	1e-05
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	6e-05
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	1e-04
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	5e-04
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	0.002
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-04
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-04
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	3e-04
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	0.001
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	0.002
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	6e-04
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	0.002

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.9 bits (180), Expect = 4e-16
 Identities = 31/91 (34%), Positives = 39/91 (42%), Gaps = 18/91 (19%)

Query: 104 TSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKD 163
           T    A+  GHL  ++ LL+ G   N SN                        LH+AA+ 
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASPNVSN------------------VKVETPLHMAARA 43

Query: 164 GHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
           GHT V K LL+   KV+A  K   T LH AA
Sbjct: 44  GHTEVAKYLLQNKAKVNAKAKDDQTPLHCAA 74

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.2 bits (168), Expect = 2e-14
 Identities = 38/141 (26%), Positives = 54/141 (38%), Gaps = 16/141 (11%)

Query: 69  NTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDI 128
            T    AARAGH +  + LL+    +N     D  T    AAR GH + ++ LLE   + 
Sbjct: 34  ETPLHMAARAGHTEVAKYLLQNKAKVNAKA-KDDQTPLHCAARIGHTNMVKLLLENNANP 92

Query: 129 NTSNATSKKLDNQLNIHQKNIK---------------NNGLNALHLAAKDGHTTVVKALL 173
           N +        +                           G   LH+AAK G   V + LL
Sbjct: 93  NLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLL 152

Query: 174 KGGCKVDASTKKGNTALHIAA 194
           +     +A+ K G T LH+A 
Sbjct: 153 ERDAHPNAAGKNGLTPLHVAV 173

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.8 bits (167), Expect = 2e-14
 Identities = 39/124 (31%), Positives = 54/124 (43%), Gaps = 19/124 (15%)

Query: 70  TSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDIN 129
           T    A+  GHL  ++ LL+ G   N SN     T    AARAGH +  + LL+    +N
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASPNVSN-VKVETPLHMAARAGHTEVAKYLLQNKAKVN 60

Query: 130 TSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTA 189
                                 +    LH AA+ GHT +VK LL+     + +T  G+T 
Sbjct: 61  AKA------------------KDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTP 102

Query: 190 LHIA 193
           LHIA
Sbjct: 103 LHIA 106

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.2 bits (160), Expect = 2e-13
 Identities = 36/150 (24%), Positives = 52/150 (34%), Gaps = 16/150 (10%)

Query: 60  PCYDCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLR 119
                     T    AA+ GH + +  LL    + N  N     T     A+ GH+    
Sbjct: 223 SANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGN-KSGLTPLHLVAQEGHVPVAD 281

Query: 120 ELLEAGVDINTSNATSK---------------KLDNQLNIHQKNIKNNGLNALHLAAKDG 164
            L++ GV ++ +                    K   Q           G + LH AA+ G
Sbjct: 282 VLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQG 341

Query: 165 HTTVVKALLKGGCKVDASTKKGNTALHIAA 194
           HT +V  LLK G   +  +  G T L IA 
Sbjct: 342 HTDIVTLLLKNGASPNEVSSDGTTPLAIAK 371

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.8 bits (141), Expect = 7e-11
 Identities = 31/134 (23%), Positives = 47/134 (35%), Gaps = 16/134 (11%)

Query: 75  AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNAT 134
           AA+ G +     LLE     N +   +  T    A    +LD ++ LL  G   ++    
Sbjct: 139 AAKYGKVRVAELLLERDAHPNAAG-KNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWN 197

Query: 135 SK---------------KLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKV 179
                            +   Q           G+  LHLAA++GH  +V  LL      
Sbjct: 198 GYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG 257

Query: 180 DASTKKGNTALHIA 193
           +   K G T LH+ 
Sbjct: 258 NLGNKSGLTPLHLV 271

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (128), Expect = 3e-09
 Identities = 18/41 (43%), Positives = 24/41 (58%)

Query: 154 LNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
           L  LH+A+  GH  +VK LL+ G   + S  K  T LH+AA
Sbjct: 1   LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAA 41

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (107), Expect = 2e-06
 Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 19/109 (17%)

Query: 64  CYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLE 123
                 T    A+  G++  ++ LL+   D+N        +   +AA+ GH D +  LL+
Sbjct: 293 TTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKT-KLGYSPLHQAAQQGHTDIVTLLLK 351

Query: 124 AGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKAL 172
            G   N  +                  ++G   L +A + G+ +V   L
Sbjct: 352 NGASPNEVS------------------SDGTTPLAIAKRLGYISVTDVL 382

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.8 bits (159), Expect = 2e-13
 Identities = 33/155 (21%), Positives = 59/155 (38%), Gaps = 23/155 (14%)

Query: 45  LRQEAKIHNAVISLEPCYDCYSDPNTSFLRAARAGHLDKLRELL-EAGVDINTSNAS--- 100
            ++ A ++    + E          T+ + AA  GH++ L+ LL E G D+N  +     
Sbjct: 125 YKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRN 184

Query: 101 DPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLA 160
               + L +  +        LL+ G D+N                       G   L LA
Sbjct: 185 ALIHALLSSDDSDVEAITHLLLDHGADVNVRG------------------ERGKTPLILA 226

Query: 161 AKDGHTTVVKALL-KGGCKVDASTKKGNTALHIAA 194
            +  H  +V+ LL +   +++ +   G TAL +A 
Sbjct: 227 VEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAV 261

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.1 bits (121), Expect = 2e-08
 Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 17/96 (17%)

Query: 99  ASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALH 158
           A + N   ++A +   +D +++LLE G ++N                    +  G   LH
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQE-----------------EEGGWTPLH 44

Query: 159 LAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
            A +     +V+ LL+ G       K G T   +AA
Sbjct: 45  NAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAA 80

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (118), Expect = 5e-08
 Identities = 32/153 (20%), Positives = 47/153 (30%), Gaps = 25/153 (16%)

Query: 67  DPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGV 126
           + N   ++A +   +D +++LLE G ++N        T    A +    D +  LL  G 
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63

Query: 127 D---------------INTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKA 171
           D                   +    KL              G  A   AA  G    +K 
Sbjct: 64  DPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKF 123

Query: 172 LLK----------GGCKVDASTKKGNTALHIAA 194
           L K               +   K G TAL  AA
Sbjct: 124 LYKRGANVNLRRKTKEDQERLRKGGATALMDAA 156

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (100), Expect = 1e-05
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 2/65 (3%)

Query: 69  NTSFLRAARAGHLDKLRELLE-AGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVD 127
            T  + A    HL  ++ LLE   ++IN ++ SD  T+ L A           L + G  
Sbjct: 220 KTPLILAVEKKHLGLVQRLLEQEHIEINDTD-SDGKTALLLAVELKLKKIAELLCKRGAS 278

Query: 128 INTSN 132
            +  +
Sbjct: 279 TDCGD 283

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 4e-04
 Identities = 37/129 (28%), Positives = 57/129 (44%), Gaps = 10/129 (7%)

Query: 60  PCYDCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLR 119
                  +  T FL AA AG +  L+  L  G D+N  +     T+F+ AA  G +  L+
Sbjct: 64  DPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYG-FTAFMEAAVYGKVKALK 122

Query: 120 ELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALL-KGGCK 178
            L + G ++N           +    Q+ ++  G  AL  AA+ GH  V+K LL + G  
Sbjct: 123 FLYKRGANVNLRR--------KTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGAD 174

Query: 179 VDASTKKGN 187
           V+A    G 
Sbjct: 175 VNACDNMGR 183

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.8 bits (146), Expect = 5e-12
 Identities = 38/144 (26%), Positives = 55/144 (38%), Gaps = 17/144 (11%)

Query: 64  CYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLE 123
           C S  N      A +G L++L+E + A   + T    D  T+   A  AGH + +  LL+
Sbjct: 1   CVS--NLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ 58

Query: 124 AGVDINTSNATSKKLDNQLNIHQK--------------NIKN-NGLNALHLAAKDGHTTV 168
            GV +N  +       +      +              N  N NG   LH AA      +
Sbjct: 59  LGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEI 118

Query: 169 VKALLKGGCKVDASTKKGNTALHI 192
              LL+GG   DA      TA+H 
Sbjct: 119 AVMLLEGGANPDAKDHYEATAMHR 142

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.7 bits (133), Expect = 3e-10
 Identities = 26/123 (21%), Positives = 42/123 (34%), Gaps = 16/123 (13%)

Query: 87  LLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSK---------- 136
           LL  G  +N  N  +  T    AA     +    LLE G + +  +              
Sbjct: 89  LLGKGAQVNAVN-QNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKG 147

Query: 137 --KLDNQLNIHQKNIK---NNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALH 191
             K+ + L  ++ +       G   LHLA  +      K L+  G  +    K+  T L 
Sbjct: 148 NLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQ 207

Query: 192 IAA 194
           +A 
Sbjct: 208 VAK 210

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (107), Expect = 1e-06
 Identities = 19/139 (13%), Positives = 36/139 (25%), Gaps = 51/139 (36%)

Query: 69  NTSFLRAARAGHLDKLRELLEAGVDINTSNA----------------------------- 99
            T    AA     +    LLE G + +  +                              
Sbjct: 104 CTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTN 163

Query: 100 ---SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNA 156
              ++ NT    A     +++ + L+  G  I   N                        
Sbjct: 164 IQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIEN------------------KEEKTP 205

Query: 157 LHLAAKDGHTTVVKALLKG 175
           L +A   G   ++K +++G
Sbjct: 206 LQVAKG-GLGLILKRMVEG 223

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 58.2 bits (139), Expect = 8e-11
 Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 18/138 (13%)

Query: 59  EPCYDCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKL 118
           +   +       +  +      L   R+ L +G   +  +A    T+   AA  G+ + L
Sbjct: 156 QNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVL 215

Query: 119 RELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCK 178
           + L++A  D+N  +                   +G   LH AA  G     + L++  C 
Sbjct: 216 KLLIQARYDVNIKD------------------YDGWTPLHAAAHWGKEEACRILVENLCD 257

Query: 179 VDASTKKGNTALHIAALD 196
           ++A  K G TA  +A  D
Sbjct: 258 MEAVNKVGQTAFDVADED 275

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 53.6 bits (127), Expect = 3e-09
 Identities = 19/88 (21%), Positives = 33/88 (37%), Gaps = 9/88 (10%)

Query: 107 LRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHT 166
           +  A+    ++L+  + +  D+       KK           +K +       A   G T
Sbjct: 3   MADAKQKRNEQLKRWIGSETDLEPPVVKRKK---------TKVKFDDGAVFLAACSSGDT 53

Query: 167 TVVKALLKGGCKVDASTKKGNTALHIAA 194
             V  LL+ G  ++ +   G TALH A 
Sbjct: 54  EEVLRLLERGADINYANVDGLTALHQAC 81

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 49.3 bits (116), Expect = 8e-08
 Identities = 23/104 (22%), Positives = 39/104 (37%), Gaps = 26/104 (25%)

Query: 73  LRAARAGHLDKLRELLEAGVDINTSNAS--------DPNTSFLRAARAGHLDKLRELLEA 124
           +  A+    ++L+  + +  D+              D    FL A  +G  +++  LLE 
Sbjct: 3   MADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLER 62

Query: 125 GVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTV 168
           G DIN +N                   +GL ALH A  D +  +
Sbjct: 63  GADINYAN------------------VDGLTALHQACIDDNVDM 88

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 47.0 bits (110), Expect = 4e-07
 Identities = 21/99 (21%), Positives = 38/99 (38%), Gaps = 20/99 (20%)

Query: 17  KKEKEEERKEEEEEEEKNISAIGPAVTKLRQEAKIHNAVISLEPCYDCYSDPNTSFLRAA 76
           +K  E+ ++    E +             R++ K+               D    FL A 
Sbjct: 8   QKRNEQLKRWIGSETDLEPP------VVKRKKTKVKF-------------DDGAVFLAAC 48

Query: 77  RAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHL 115
            +G  +++  LLE G DIN +N  D  T+  +A    ++
Sbjct: 49  SSGDTEEVLRLLERGADINYAN-VDGLTALHQACIDDNV 86

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 55.9 bits (133), Expect = 4e-10
 Identities = 14/44 (31%), Positives = 23/44 (52%)

Query: 151 NNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
            +G   + LAA++G   VV  L++ G  V+A     +TA  +A 
Sbjct: 219 EDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQ 262

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 50.9 bits (120), Expect = 3e-08
 Identities = 12/75 (16%), Positives = 24/75 (32%), Gaps = 18/75 (24%)

Query: 100 SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHL 159
            D  T  + AA+ G ++ +  L++ G  +   +                       A  L
Sbjct: 219 EDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVD------------------ATDHTARQL 260

Query: 160 AAKDGHTTVVKALLK 174
           A  + H  +V    +
Sbjct: 261 AQANNHHNIVDIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 45.9 bits (107), Expect = 1e-06
 Identities = 15/93 (16%), Positives = 22/93 (23%), Gaps = 27/93 (29%)

Query: 107 LRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHT 166
           L    AG       +    V+I                       +    LH  A +   
Sbjct: 6   LHTEAAGSYAITEPITRESVNIIDPR-------------------HNRTVLHWIASNSSA 46

Query: 167 TVVKALL--------KGGCKVDASTKKGNTALH 191
              + L+          G  V+A     NT L 
Sbjct: 47  EKSEDLIVHEAKECIAAGADVNAMDCDENTPLM 79

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 41.3 bits (95), Expect = 4e-05
 Identities = 12/65 (18%), Positives = 26/65 (40%), Gaps = 1/65 (1%)

Query: 60  PCYDCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLR 119
                  D  T  + AA+ G ++ +  L++ G  +   +A+D +T+   A    H + + 
Sbjct: 213 NKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATD-HTARQLAQANNHHNIVD 271

Query: 120 ELLEA 124
                
Sbjct: 272 IFDRC 276

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 37.8 bits (86), Expect = 6e-04
 Identities = 13/68 (19%), Positives = 20/68 (29%), Gaps = 10/68 (14%)

Query: 73  LRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELL--------EA 124
           L    AG       +    V+I         T     A     +K  +L+         A
Sbjct: 6   LHTEAAGSYAITEPITRESVNIIDPR--HNRTVLHWIASNSSAEKSEDLIVHEAKECIAA 63

Query: 125 GVDINTSN 132
           G D+N  +
Sbjct: 64  GADVNAMD 71

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 36.3 bits (82), Expect = 0.002
 Identities = 8/38 (21%), Positives = 14/38 (36%), Gaps = 2/38 (5%)

Query: 157 LHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
           LH  A  G   + + + +    +    +   T LH  A
Sbjct: 6   LHTEAA-GSYAITEPITRESVNI-IDPRHNRTVLHWIA 41

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.7 bits (127), Expect = 8e-10
 Identities = 30/141 (21%), Positives = 42/141 (29%), Gaps = 13/141 (9%)

Query: 67  DPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGV 126
           D     L AARAG  D++R L+  G    T                    ++        
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR 60

Query: 127 DINTSNATSKKLDNQLNIH-------------QKNIKNNGLNALHLAAKDGHTTVVKALL 173
           D  T    +         H                     + ALH A +  H  VV+ L+
Sbjct: 61  DARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLI 120

Query: 174 KGGCKVDASTKKGNTALHIAA 194
           K G  V   +K   TA  I+ 
Sbjct: 121 KYGADVHTQSKFCKTAFDISI 141

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.4 bits (77), Expect = 0.004
 Identities = 4/30 (13%), Positives = 14/30 (46%), Gaps = 2/30 (6%)

Query: 143 NIHQKNIKNNGLNALHLAAKDGHTTVVKAL 172
           ++H ++       A  ++  +G+  + + L
Sbjct: 125 DVHTQS--KFCKTAFDISIDNGNEDLAEIL 152

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.1 bits (131), Expect = 9e-10
 Identities = 23/133 (17%), Positives = 43/133 (32%), Gaps = 15/133 (11%)

Query: 62  YDCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLREL 121
           +   +   T    AA+      +  +++       S  ++  +             L  L
Sbjct: 183 HIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENL 242

Query: 122 LEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDA 181
               +  N  NA                 +NG   L++AA+ G+ ++V ALL  G     
Sbjct: 243 DLKWIIANMLNAQD---------------SNGDTCLNIAARLGNISIVDALLDYGADPFI 287

Query: 182 STKKGNTALHIAA 194
           + K G   +   A
Sbjct: 288 ANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.4 bits (106), Expect = 2e-06
 Identities = 16/124 (12%), Positives = 31/124 (25%), Gaps = 17/124 (13%)

Query: 70  TSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDIN 129
               R       +    L     + N+   S        +  +   +         +++N
Sbjct: 41  AFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLN 100

Query: 130 TSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTA 189
                              +  +G   LH      +  +VK L+K G         G + 
Sbjct: 101 IP-----------------VDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESC 143

Query: 190 LHIA 193
           L  A
Sbjct: 144 LVKA 147

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.1 bits (100), Expect = 1e-05
 Identities = 26/215 (12%), Positives = 62/215 (28%), Gaps = 36/215 (16%)

Query: 15  LEKKEKEEERKEEEEEEEKNISAIGPAVTKLRQEAKIHNAVISLEPCYDCYSDPNTSFLR 74
           +      +      E    N      +   L QE         L          NT    
Sbjct: 54  MPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHW 113

Query: 75  AARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHL-------DKLRELLEAGVD 127
                +L+ ++ L++ G +    + +   +  ++A ++ +          L  L    + 
Sbjct: 114 LTSIANLELVKHLVKHGSNRLYGD-NMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLIL 172

Query: 128 INTSNAT-------------------------SKKLDNQLNIHQKNIKNNGLNALHLAAK 162
            ++ N T                            +  + N   ++  N   +  +    
Sbjct: 173 EDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNG 232

Query: 163 DGHTTVVKALLKG---GCKVDASTKKGNTALHIAA 194
           +   ++++ L         ++A    G+T L+IAA
Sbjct: 233 ERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAA 267

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.6 bits (96), Expect = 3e-05
 Identities = 18/169 (10%), Positives = 45/169 (26%), Gaps = 14/169 (8%)

Query: 27  EEEEEEKNISAIGPAVTKLRQEAKIHNAVISLEPCYDCYSDPNTSFLRAARAGHLDKLRE 86
           + E++ K  + +   +    QE        S     +  S        +  +   +    
Sbjct: 32  DNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDA 91

Query: 87  LLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQ 146
                +++N       NT         +L+ ++ L++ G +    +              
Sbjct: 92  FPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGD-------------- 137

Query: 147 KNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAAL 195
              ++  + A+         T    L      +        T LH   +
Sbjct: 138 NMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIII 186

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (124), Expect = 4e-09
 Identities = 14/58 (24%), Positives = 25/58 (43%)

Query: 137 KLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
           +L  Q   +      +G +ALH A+  G   +V+ L++ G          +T L +A 
Sbjct: 161 QLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVAR 218

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.8 bits (122), Expect = 1e-08
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 4/46 (8%)

Query: 152 NGLNALHLAAKDGHTTVVKALLK----GGCKVDASTKKGNTALHIA 193
           +G   LH+A   G+   V  L+     GG ++D       T LH+A
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLA 47

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (118), Expect = 3e-08
 Identities = 15/110 (13%), Positives = 32/110 (29%), Gaps = 18/110 (16%)

Query: 61  CYDCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRE 120
                     S L  A   +   + +LL        +     +++   A+  G L  +R 
Sbjct: 136 IDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRT 195

Query: 121 LLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVK 170
           L+ +G D +  N                   +    L +A       +++
Sbjct: 196 LVRSGADSSLKN------------------CHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (99), Expect = 1e-05
 Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 1/60 (1%)

Query: 60  PCYDCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLR 119
                    +++   A+  G L  +R L+ +G D +  N    +T  + A     +D LR
Sbjct: 169 NVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKN-CHNDTPLMVARSRRVIDILR 227

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.1 bits (123), Expect = 6e-09
 Identities = 9/40 (22%), Positives = 14/40 (35%), Gaps = 1/40 (2%)

Query: 156 ALHLAAKDGHTTVVKALLK-GGCKVDASTKKGNTALHIAA 194
            LH A  +     V+ LL      +    + G   LH + 
Sbjct: 3   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSV 42

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.7 bits (96), Expect = 2e-05
 Identities = 11/76 (14%), Positives = 20/76 (26%), Gaps = 19/76 (25%)

Query: 103 NTSFLRAARAGHLDKLRELLEA-GVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAA 161
           N    +A       K++ELL +    +   +                   +G   LH + 
Sbjct: 1   NYPLHQACMENEFFKVQELLHSKPSLLLQKD------------------QDGRIPLHWSV 42

Query: 162 KDGHTTVVKALLKGGC 177
                 +   LL    
Sbjct: 43  SFQAHEITSFLLSKME 58

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.7 bits (96), Expect = 3e-05
 Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 1/45 (2%)

Query: 151 NNGLNALHLAAKDGHTTVVKALL-KGGCKVDASTKKGNTALHIAA 194
             G   L  A  +GH      L+ K G + D    KG  A  +A 
Sbjct: 170 KQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL 214

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.0 bits (89), Expect = 2e-04
 Identities = 9/58 (15%), Positives = 17/58 (29%), Gaps = 2/58 (3%)

Query: 69  NTSFLRAARAGHLDKLRELLEA-GVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG 125
           N    +A       K++ELL +    +   +  D       +      +    LL   
Sbjct: 1   NYPLHQACMENEFFKVQELLHSKPSLLLQKD-QDGRIPLHWSVSFQAHEITSFLLSKM 57

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.4 bits (124), Expect = 7e-09
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 3/49 (6%)

Query: 149 IKNNGLNALHLAAKDGHTTVVKALLKGGCK---VDASTKKGNTALHIAA 194
           +  +G  ALHLA    H   +  LL        +D     G TALH+AA
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAA 53

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.2 bits (108), Expect = 7e-07
 Identities = 14/79 (17%), Positives = 18/79 (22%), Gaps = 18/79 (22%)

Query: 102 PNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAA 161
             T    A  A     L  LL+AG D                         G   L  A 
Sbjct: 192 GRTPLHLAVEAQAASVLELLLKAGADPTARM------------------YGGRTPLGSAL 233

Query: 162 KDGHTTVVKALLKGGCKVD 180
              +  + + L   G    
Sbjct: 234 LRPNPILARLLRAHGAPEP 252

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.9 bits (102), Expect = 4e-06
 Identities = 29/164 (17%), Positives = 44/164 (26%), Gaps = 29/164 (17%)

Query: 60  PCYDCYSDPNTSFLRAARAGHLDKLRELLEAGVDIN---------TSNASDPNTSFLRAA 110
                    +T+   A R         LL+                S    P+TS   AA
Sbjct: 70  GVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAA 129

Query: 111 RA----GHLDKLRELLEAGVDINTSN----------------ATSKKLDNQLNIHQKNIK 150
                    ++     +  + +   N                   + L +      K   
Sbjct: 130 VDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEP 189

Query: 151 NNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
             G   LHLA +    +V++ LLK G    A    G T L  A 
Sbjct: 190 TCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSAL 233

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.1 bits (92), Expect = 8e-05
 Identities = 25/160 (15%), Positives = 41/160 (25%), Gaps = 23/160 (14%)

Query: 67  DPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPN--TSFLRAARAGHLDKLRELLEA 124
           D +T+   A    H   L  LL         +  +    T+   AA  G    + +L   
Sbjct: 8   DGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL--- 64

Query: 125 GVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTK 184
                                    +  G  ALHLA +    T    LL+         +
Sbjct: 65  ---------------YAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHP---R 106

Query: 185 KGNTALHIAALDSLVTDIASSAITDATSLPCSVILRTLRS 224
             +      + D       + A  D+   P +        
Sbjct: 107 DASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDED 146

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 51.4 bits (122), Expect = 2e-08
 Identities = 25/183 (13%), Positives = 42/183 (22%), Gaps = 36/183 (19%)

Query: 27  EEEEEEKNISAIGPAVTKLRQEAKIHNAVISLEPCYDCYSDPNTSFLRAARAGHLDKLRE 86
           E  E +  +  I   + +   +  I    +SL                          + 
Sbjct: 8   ENYENDPQLRLIPWILWENLFQHFISANELSL---MTLSYKEAIHIFLPGTKNMEQVRQL 64

Query: 87  LLEAGVDINTSNAS----------DPNTSFLRAARAGHLDKL---RELLEAGVDINTSNA 133
           L       N +                     AA  G    L     LL +   +     
Sbjct: 65  LCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQ- 123

Query: 134 TSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKK--GNTALH 191
                                 A  LAA++GH  V+  L +       +  +     A  
Sbjct: 124 -----------------AENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFR 166

Query: 192 IAA 194
           +AA
Sbjct: 167 LAA 169

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 50.3 bits (119), Expect = 4e-08
 Identities = 26/140 (18%), Positives = 40/140 (28%), Gaps = 16/140 (11%)

Query: 69  NTSFLRAARAGHLDKLRELLEAGVDINTSNASDPN-TSFLRAARAGHLDKLRELLEAGVD 127
             +F  AA  GHL  L  L E       +     N  +F  AA  GHL  L  L E    
Sbjct: 127 YQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPT 186

Query: 128 INTSNATSKKLDNQLNIHQK-----------NIKNNGLNALHLAAKDGHTTVVKALLKGG 176
             T+   ++                      +       A     + G   V   + +  
Sbjct: 187 EATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHV 246

Query: 177 CKVDASTKKGNTALHIAALD 196
                  K+ + A  ++  D
Sbjct: 247 ----NRLKEMHDAFKLSNPD 262

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 46.4 bits (109), Expect = 8e-07
 Identities = 16/116 (13%), Positives = 30/116 (25%), Gaps = 20/116 (17%)

Query: 58  LEPCYDCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDK 117
           +    +   + + +F  +   G  D + +                  + +R      LD 
Sbjct: 242 IARHVNRLKEMHDAFKLSNPDGVFDLVTKS-------ECLQGFYMLRNLIRRNDEVLLDD 294

Query: 118 LRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALL 173
           +R LL                          I  +    L LA + G+      LL
Sbjct: 295 IRFLLSIPGIKA-------------LAPTATIPGDANELLRLALRLGNQGACALLL 337

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 46.0 bits (108), Expect = 1e-06
 Identities = 18/144 (12%), Positives = 35/144 (24%), Gaps = 18/144 (12%)

Query: 61  CYDCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRE 120
                 +       A   GH + +  LL+  V +  +         +     G       
Sbjct: 190 AMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAE--------IHEFEYGEKYVNPF 241

Query: 121 LLEAGVDINTSNATSKKL--DNQLNIHQKNIKNNG---LNALHLAAKDGHTTVVKALLKG 175
           +      +   +   K    D   ++  K+    G   L  L     +     ++ LL  
Sbjct: 242 IARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSI 301

Query: 176 GC-----KVDASTKKGNTALHIAA 194
                           N  L +A 
Sbjct: 302 PGIKALAPTATIPGDANELLRLAL 325

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.4 bits (114), Expect = 5e-08
 Identities = 17/150 (11%), Positives = 42/150 (28%), Gaps = 29/150 (19%)

Query: 66  SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTS--------FLRAARAGHLDK 117
           +    S   A +   +  L +    GVD+                    +R+     L  
Sbjct: 4   AAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHI 63

Query: 118 LRELLEAGVDINTSNATSKKLDNQLNIHQKNIK---------------NNGLNALHLAAK 162
           +  L++   +++          +   +                      +G   L +A +
Sbjct: 64  VDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKR 123

Query: 163 DGHTTVVKALLKGGCKVDASTKKGNTALHI 192
             H    + L +      A + + N+ +H+
Sbjct: 124 LKHEHCEELLTQ------ALSGRFNSHVHV 147

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.2 bits (90), Expect = 1e-04
 Identities = 19/134 (14%), Positives = 35/134 (26%), Gaps = 48/134 (35%)

Query: 97  SNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNA 156
           ++ +    S   A +   +  L +    GVD+      +            N       A
Sbjct: 1   ADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLA------------NGHEPDETA 48

Query: 157 LHLAAK---DGHTTVVKALLKGGCKV---------------------------------D 180
           LHLA +        +V  L++    +                                 +
Sbjct: 49  LHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIE 108

Query: 181 ASTKKGNTALHIAA 194
            + + G T L IA 
Sbjct: 109 IANESGETPLDIAK 122

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (112), Expect = 2e-07
 Identities = 9/46 (19%), Positives = 18/46 (39%), Gaps = 4/46 (8%)

Query: 152 NGLNALHLAAKDGHTTVVKALLK----GGCKVDASTKKGNTALHIA 193
           +G + LHLA       +   +++        ++       T LH+A
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLA 46

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (96), Expect = 2e-05
 Identities = 20/128 (15%), Positives = 39/128 (30%), Gaps = 18/128 (14%)

Query: 60  PCYDCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLR 119
                  + +T    A+  G+L  +  L+  G D+N     +  T+   A    + D + 
Sbjct: 103 ILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVS 162

Query: 120 ELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKV 179
            LL+ G D+N                       G +   L      T + + L +   + 
Sbjct: 163 LLLKCGADVNRVT------------------YQGYSPYQLTWGRPSTRIQQQLGQLTLEN 204

Query: 180 DASTKKGN 187
                +  
Sbjct: 205 LQMLPESE 212

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (83), Expect = 0.001
 Identities = 15/50 (30%), Positives = 21/50 (42%)

Query: 145 HQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
                  NG  ALHLA    +  +V  LLK G  V+  T +G +   +  
Sbjct: 137 VNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTW 186

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (109), Expect = 3e-07
 Identities = 10/33 (30%), Positives = 14/33 (42%)

Query: 155 NALHLAAKDGHTTVVKALLKGGCKVDASTKKGN 187
           N L  AA  G    + +LL+    V+A    G 
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGR 35

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 3e-04
 Identities = 9/35 (25%), Positives = 12/35 (34%), Gaps = 1/35 (2%)

Query: 143 NIHQKNIKNN-GLNALHLAAKDGHTTVVKALLKGG 176
                  +N+ G  A  LA   G   VV  +   G
Sbjct: 122 TASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (84), Expect = 4e-04
 Identities = 10/24 (41%), Positives = 15/24 (62%)

Query: 75 AARAGHLDKLRELLEAGVDINTSN 98
          AA  G L++L  LL+  V++N  N
Sbjct: 8  AAARGDLEQLTSLLQNNVNVNAQN 31

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (84), Expect = 4e-04
 Identities = 10/24 (41%), Positives = 15/24 (62%)

Query: 109 AARAGHLDKLRELLEAGVDINTSN 132
           AA  G L++L  LL+  V++N  N
Sbjct: 8   AAARGDLEQLTSLLQNNVNVNAQN 31

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 3e-06
 Identities = 23/122 (18%), Positives = 45/122 (36%), Gaps = 15/122 (12%)

Query: 67  DPNTSFL-RAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG 125
           +P+  +L  AA  G ++++R LLEAG + N  N+       +    +  + +L  L  A 
Sbjct: 1   EPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAE 60

Query: 126 VDINTSNATSKKLDNQLNIHQKNIK--------------NNGLNALHLAAKDGHTTVVKA 171
            +       ++ + +       +                  G   + LA + GH  V + 
Sbjct: 61  PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARY 120

Query: 172 LL 173
           L 
Sbjct: 121 LR 122

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 1e-04
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 155 NALHLAAKDGHTTVVKALLKGGCKVDA 181
           + L  AA  G    V+ALL+ G   +A
Sbjct: 5   DWLATAAARGRVEEVRALLEAGANPNA 31

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 1e-05
 Identities = 22/109 (20%), Positives = 36/109 (33%), Gaps = 16/109 (14%)

Query: 102 PNTSFLRAARAGHLDKLRELLEAGVDINTSNA---------------TSKKLDNQLNIHQ 146
           P    L ++  G  D ++ ++    D +  N                   K   Q  ++ 
Sbjct: 1   PLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV 60

Query: 147 KNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKK-GNTALHIAA 194
               ++G   LH AA   +  V K L++ G  V A T     TA     
Sbjct: 61  NAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCE 109

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 6e-05
 Identities = 13/130 (10%), Positives = 31/130 (23%), Gaps = 19/130 (14%)

Query: 68  PNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKL--------- 118
           P    L ++  G  D ++ ++    D +  N                             
Sbjct: 1   PLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV 60

Query: 119 -------RELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHL--AAKDGHTTVV 169
                     L      N        +++   +      ++   A       ++G+T   
Sbjct: 61  NAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMT-YSDMQTAADKCEEMEEGYTQCS 119

Query: 170 KALLKGGCKV 179
           + L     K+
Sbjct: 120 QFLYGVQEKM 129

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 1e-04
 Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 1/35 (2%)

Query: 155 NALHLAAKDGHTTVVKALL-KGGCKVDASTKKGNT 188
           + L  AA  G    V+ LL +     DA  + G T
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKT 38

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (84), Expect = 5e-04
 Identities = 25/136 (18%), Positives = 42/136 (30%), Gaps = 15/136 (11%)

Query: 73  LRAARAGHLDKLRELLEA-GVDINTSNASD-------------PNTSFLRAARAGHLDKL 118
             AA  G + ++R LL    V  +  N                     L+   + ++   
Sbjct: 7   SGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQDT 66

Query: 119 RELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCK 178
                      T    + K+  +           G   +HLA ++GHT VV  L      
Sbjct: 67  SGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA-ESD 125

Query: 179 VDASTKKGNTALHIAA 194
           +     +G T L +A 
Sbjct: 126 LHRRDARGLTPLELAL 141

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (80), Expect = 0.002
 Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 2/31 (6%)

Query: 143 NIHQKNIKNNGLNALHLAAKDGHTTVVKALL 173
           ++H+++    GL  L LA + G   +V  L 
Sbjct: 125 DLHRRD--ARGLTPLELALQRGAQDLVDILQ 153

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 39.0 bits (89), Expect = 2e-04
 Identities = 11/71 (15%), Positives = 23/71 (32%), Gaps = 18/71 (25%)

Query: 102 PNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAA 161
             T    AAR G  +  + LL+   +   ++                  +       +A+
Sbjct: 156 DETPLFLAAREGSYEASKALLDNFANREITD------------------HMDRLPRDVAS 197

Query: 162 KDGHTTVVKAL 172
           +  H  +V+ L
Sbjct: 198 ERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 39.0 bits (89), Expect = 2e-04
 Identities = 10/38 (26%), Positives = 16/38 (42%)

Query: 157 LHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
           L LAA++G     KALL      + +         +A+
Sbjct: 160 LFLAAREGSYEASKALLDNFANREITDHMDRLPRDVAS 197

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 38.2 bits (87), Expect = 3e-04
 Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 17/55 (30%)

Query: 118 LRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKAL 172
           + +LL  G ++N        +D             G  +LHLAA+       K L
Sbjct: 5   ISDLLAQGAELN------ATMDK-----------TGETSLHLAARFARADAAKRL 42

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 36.7 bits (83), Expect = 0.001
 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)

Query: 168 VVKALLKGGCKVDAST-KKGNTALHIAA 194
           V+  LL  G +++A+  K G T+LH+AA
Sbjct: 4   VISDLLAQGAELNATMDKTGETSLHLAA 31

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 35.5 bits (80), Expect = 0.002
 Identities = 11/38 (28%), Positives = 17/38 (44%)

Query: 84  LRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLREL 121
           + +LL  G ++N +      TS   AAR    D  + L
Sbjct: 5   ISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRL 42

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.4 bits (82), Expect = 6e-04
 Identities = 22/107 (20%), Positives = 39/107 (36%), Gaps = 15/107 (14%)

Query: 103 NTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKN----------- 151
           +  F+ A + G LD++++ +  G D+N +    +K  +      +               
Sbjct: 3   DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN 62

Query: 152 ----NGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA 194
               + +  L  A  +GH + VK LL  G         G TAL    
Sbjct: 63  APDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATD 109

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 34.9 bits (78), Expect = 0.002
 Identities = 20/120 (16%), Positives = 37/120 (30%), Gaps = 18/120 (15%)

Query: 69  NTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDI 128
           +  F+ A + G LD++++ +  G D+N +           A           LL+     
Sbjct: 3   DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN 62

Query: 129 NTSNATSKKLDNQLNIHQKNIK--------------NNGLNALHLAAKDGHTTVVKALLK 174
                    L + +     +                 +GL AL           +KALL+
Sbjct: 63  APDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATDNQ----AIKALLQ 118

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	225
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.95
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.95
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.95
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.94
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.94
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.93
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.93
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.92
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.92
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.92
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.92
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.91
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.91
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.91
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.9
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.89
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.88
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.87
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.87
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.86
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.86
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.85
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.84
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.84
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.84
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.83
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.8
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.8
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.78
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.77
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.7
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.69
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.69
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.63

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=1.2e-27  Score=186.90  Aligned_cols=63  Identities=27%  Similarity=0.257  Sum_probs=51.3

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHHhhcCCCC
Q psy10604        150 KNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAITDATSL  213 (225)
Q Consensus       150 d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~~~~~~  213 (225)
                      +..|.||||+|+..++.+++++|+++|++++.+|..|+||||+|+..|+. .++++|+.+|++.
T Consensus       189 ~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~~~~~~-~i~~~Ll~~Ga~~  251 (255)
T d1oy3d_         189 PTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNP-ILARLLRAHGAPE  251 (255)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCH-HHHHHHHHTTCCC
T ss_pred             cccccccccccccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCH-HHHHHHHHcCCCC
Confidence            35688888888888888888888888888888888888888888888884 5677777777753

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.7e-28  Score=171.53  Aligned_cols=123  Identities=23%  Similarity=0.272  Sum_probs=111.3

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhhhhh
Q psy10604         67 DPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQ  146 (225)
Q Consensus        67 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~~~~  146 (225)
                      .+.++||+|+..|+.++|++|+++|++++..+ ..|.||||+|+ .|+.+++++|++.|++++.++.             
T Consensus         2 p~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~-~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~-------------   66 (125)
T d1bi7b_           2 PSADWLATAAARGRVEEVRALLEAGANPNAPN-SYGRRPIQVMM-MGSARVAELLLLHGAEPNCADP-------------   66 (125)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCC-SSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCT-------------
T ss_pred             CChhHHHHHHHCCCHHHHHHHHHcCCcccccc-ccccccccccc-cccccccccccccccccccccc-------------
Confidence            35689999999999999999999999999998 89999999775 7999999999999999998875             


Q ss_pred             hccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHHhhc
Q psy10604        147 KNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAITD  209 (225)
Q Consensus       147 ~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~~  209 (225)
                          ..+.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+. .++++|+..
T Consensus        67 ----~~~~~~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~-~~v~~Llsa  124 (125)
T d1bi7b_          67 ----ATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHR-DVARYLRAA  124 (125)
T ss_dssp             ----TTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCH-HHHHHHSSC
T ss_pred             ----cccccccccccccccccccccccccccccccccCCCCCHHHHHHHcCCH-HHHHHHHhc
Confidence                2345799999999999999999999999999999999999999999996 566776653

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.95  E-value=1.9e-28  Score=170.64  Aligned_cols=107  Identities=30%  Similarity=0.460  Sum_probs=103.3

Q ss_pred             chHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhhhhhhc
Q psy10604         69 NTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKN  148 (225)
Q Consensus        69 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~  148 (225)
                      .|||++|+..|+.+++++|+++|++++..+ ..|+||||+|+..|+.+++++|++.|++++.++.               
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~-~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~---------------   66 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTL-EGGRKPLHYAADCGQLEILEFLLLKGADINAPDK---------------   66 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCS-SSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSS---------------
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhcccccc-ccccccccccccccccccccccccccceeeeccc---------------
Confidence            489999999999999999999999999998 8999999999999999999999999999999886               


Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHH
Q psy10604        149 IKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA  194 (225)
Q Consensus       149 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~  194 (225)
                         .|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|.
T Consensus        67 ---~g~tpLh~A~~~~~~~~v~~Ll~~Gad~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          67 ---HHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATD  109 (118)
T ss_dssp             ---SCSCHHHHHHTTTCCHHHHHHHTTCCCSSSSSSSTCCCCCTCS
T ss_pred             ---ccccchhhhhhcCchhhhhhhhcccccceeeCCCCCCHHHHHh
Confidence               9999999999999999999999999999999999999999884

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.94  E-value=2.9e-27  Score=186.45  Aligned_cols=142  Identities=23%  Similarity=0.306  Sum_probs=113.8

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHH--------HHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchh
Q psy10604         65 YSDPNTSFLRAARAGHLDKLREL--------LEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSK  136 (225)
Q Consensus        65 ~~~g~t~L~~A~~~g~~~~v~~L--------l~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~  136 (225)
                      +..|+||||+|+..|+.++|++|        ++.|+++|.++ ..|.||||+|+.+|+.+++++|+++|++++.++..+.
T Consensus        30 ~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d-~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~  108 (277)
T d2fo1e1          30 PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMD-CDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSER  108 (277)
T ss_dssp             CSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCC-TTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCC
T ss_pred             CCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccC-CCCCeeecccccccccccccccccccccccccccccc
Confidence            34689999999999998877665        56799999998 8999999999999999999999999999987754110


Q ss_pred             h-------------------------------------------------------------------------------
Q psy10604        137 K-------------------------------------------------------------------------------  137 (225)
Q Consensus       137 ~-------------------------------------------------------------------------------  137 (225)
                      .                                                                               
T Consensus       109 t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  188 (277)
T d2fo1e1         109 SALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGR  188 (277)
T ss_dssp             CHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCC
T ss_pred             ccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCCC
Confidence            0                                                                               


Q ss_pred             -------------HHHH-hhh---hhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChH
Q psy10604        138 -------------LDNQ-LNI---HQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVT  200 (225)
Q Consensus       138 -------------~~~~-~~~---~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~  200 (225)
                                   .... +..   .....|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+. 
T Consensus       189 t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~d~~G~T~L~~A~~~~~~-  267 (277)
T d2fo1e1         189 TALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHH-  267 (277)
T ss_dssp             CTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCH-
T ss_pred             CccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHcCCH-
Confidence                         0000 000   0022367899999999999999999999999999999999999999999999996 


Q ss_pred             HHHHHHhh
Q psy10604        201 DIASSAIT  208 (225)
Q Consensus       201 ~i~~~l~~  208 (225)
                      .|+++|.+
T Consensus       268 ~iv~lL~~  275 (277)
T d2fo1e1         268 NIVDIFDR  275 (277)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHH
Confidence            56666654

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=1.1e-25  Score=162.66  Aligned_cols=136  Identities=27%  Similarity=0.327  Sum_probs=111.6

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcch------------
Q psy10604         68 PNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATS------------  135 (225)
Q Consensus        68 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~------------  135 (225)
                      ..||||.|++.|+.++|++||++|++++ .+ ..|+||||+|+..++.++++.++.............            
T Consensus         2 ~~t~L~~Aa~~g~~~~v~~LL~~ga~~~-~~-~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (153)
T d1awcb_           2 LGKKLLEAARAGQDDEVRILMANGAPFT-TD-WLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGH   79 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCCC-CC-TTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             CCHHHHHHHHCCCHHHHHHHHHcCCCcc-cc-cCCCcccccccccccccccccccccccccccccccccccccccccccc
Confidence            4599999999999999999999999887 45 889999999999999999999998866554433211            


Q ss_pred             hhHHHHhhhhh---hccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHH
Q psy10604        136 KKLDNQLNIHQ---KNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSA  206 (225)
Q Consensus       136 ~~~~~~~~~~~---~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l  206 (225)
                      .....++...+   ..+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.+|+.+ |+++|
T Consensus        80 ~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~~e-iv~lL  152 (153)
T d1awcb_          80 ANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNED-LAEIL  152 (153)
T ss_dssp             HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH-HHHHH
T ss_pred             ceeeecccccCCccccccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHHHHHcCCHH-HHHhC
Confidence            11222222222   335789999999999999999999999999999999999999999999999965 55655

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.8e-26  Score=162.19  Aligned_cols=120  Identities=23%  Similarity=0.282  Sum_probs=108.7

Q ss_pred             chHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhhhhhhc
Q psy10604         69 NTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKN  148 (225)
Q Consensus        69 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~  148 (225)
                      .++|+.|+..|+.++|++|+++|++++.++ ..|+||||+|+..|+.+++++|++.|++++.++.               
T Consensus         2 l~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d-~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~---------------   65 (130)
T d1ycsb1           2 LALLLDSSLEGEFDLVQRIIYEVDDPSLPN-DEGITALHNAVCAGHTEIVKFLVQFGVNVNAADS---------------   65 (130)
T ss_dssp             HHHHHHHHHHTCHHHHHHHTSTTSSCCCCC-TTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCT---------------
T ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCCccccc-cccccccccccccccccccccccccccccccccc---------------
Confidence            478999999999999999999999999998 8999999999999999999999999999998886               


Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCC-CCChHHHHH--HHcCChHHHHHHHhh
Q psy10604        149 IKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTK-KGNTALHIA--ALDSLVTDIASSAIT  208 (225)
Q Consensus       149 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~-~g~tpL~~A--~~~~~~~~i~~~l~~  208 (225)
                         +|+||||+|+..|+.+++++|+++|++++..+. .|+||++++  ...|+. .++++|+.
T Consensus        66 ---~g~tpLh~A~~~g~~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~-eiv~~L~~  124 (130)
T d1ycsb1          66 ---DGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYT-QCSQFLYG  124 (130)
T ss_dssp             ---TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCC-CHHHHHHH
T ss_pred             ---cCcccccccchhhHHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChH-HHHHHHHh
Confidence               999999999999999999999999999998775 588887765  566775 46777664

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=8.4e-26  Score=163.91  Aligned_cols=138  Identities=29%  Similarity=0.330  Sum_probs=115.6

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhh------------
Q psy10604         70 TSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKK------------  137 (225)
Q Consensus        70 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~------------  137 (225)
                      ++||+||..|+.++|++|+++|++++.++ ..|.||||+|+ .|+.+++++|++.|++++..+.....            
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d-~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~   80 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQN-GFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLD   80 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCC-TTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccC-Ccccccccccc-cccccccccccccccccccccccCcccccccccccccc
Confidence            78999999999999999999999999998 89999999886 78999999999999999877763322            


Q ss_pred             HHHHhhhh---hhccCCCCCcHHHHHHHcCCHHHHHHHHHCCC-CCCCCCCCCChHHHHHHHcCChHHHHHHHhhcC
Q psy10604        138 LDNQLNIH---QKNIKNNGLNALHLAAKDGHTTVVKALLKGGC-KVDASTKKGNTALHIAALDSLVTDIASSAITDA  210 (225)
Q Consensus       138 ~~~~~~~~---~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga-~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~~~  210 (225)
                      ....+...   ....|..|.+|+|+|+..++.+++++|+++|+ +++.+|..|.||||+|+..|+.+ ++++|+..|
T Consensus        81 ~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~-iv~~Ll~~G  156 (156)
T d1ihba_          81 TLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNE-VVSLMQANG  156 (156)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHH-HHHHHHHTC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHH-HHHHHHhcC
Confidence            22222222   23346789999999999999999999999876 88999999999999999999964 668877764

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.1e-26  Score=174.59  Aligned_cols=146  Identities=21%  Similarity=0.241  Sum_probs=107.1

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHH----cCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhh----
Q psy10604         66 SDPNTSFLRAARAGHLDKLRELLE----AGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKK----  137 (225)
Q Consensus        66 ~~g~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~----  137 (225)
                      ++|+||||+|+..|+.+++++|++    .|++++..+ ..|+||||+|+..|+.+++++|++.|++++........    
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d-~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~   79 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYN-NLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHL   79 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCC-TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccC-CCCCccceehhccccccccccccccccccccccccccccccc
Confidence            479999999999999999998875    799999998 89999999999999999999999999988766541110    


Q ss_pred             ---------------------------------------------HHHHhhhh----hhccCCCCCcHHHHHHHcCCHHH
Q psy10604        138 ---------------------------------------------LDNQLNIH----QKNIKNNGLNALHLAAKDGHTTV  168 (225)
Q Consensus       138 ---------------------------------------------~~~~~~~~----~~~~d~~g~t~L~~A~~~~~~~~  168 (225)
                                                                   ....+...    ....+..+.+||++|+..+...+
T Consensus        80 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~  159 (228)
T d1k1aa_          80 ACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSM  159 (228)
T ss_dssp             HHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHH
T ss_pred             ccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhh
Confidence                                                         00000000    01113466777777777777777


Q ss_pred             HHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHHhhcCCCC
Q psy10604        169 VKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAITDATSL  213 (225)
Q Consensus       169 ~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~~~~~~  213 (225)
                      ++.++.+|.+.+.+|..|.||||+|+..|+. .++++|+..|++.
T Consensus       160 ~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~-~~v~~Ll~~Gad~  203 (228)
T d1k1aa_         160 VQLLLQHGANVNAQMYSGSSALHSASGRGLL-PLVRTLVRSGADS  203 (228)
T ss_dssp             HHHHHHTTCCTTCBCTTSCBHHHHHHHHTCH-HHHHHHHHTTCCT
T ss_pred             hhhhhhhccccccccccCcchHHHHHHcCCH-HHHHHHHHCCCCC
Confidence            7777777777777777777777777777775 3455666655443

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=4e-25  Score=169.88  Aligned_cols=143  Identities=22%  Similarity=0.242  Sum_probs=99.5

Q ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhh------
Q psy10604         64 CYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKK------  137 (225)
Q Consensus        64 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~------  137 (225)
                      ....+.++++.++..|+.+++++|+++|++++..+ ..|.||||+|+.+|+.+++++|+++|++++.++..+..      
T Consensus        66 ~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~d~~~~d-~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~  144 (223)
T d1uoha_          66 KDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVN-QNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAA  144 (223)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCC-TTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             ccccccccccccccccccchhHHHhccCceeEeeC-CCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhh
Confidence            34455667777777777777777777777776666 66777777777777777777777777766655542211      


Q ss_pred             ------HHHHhhhhh---hccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHHhh
Q psy10604        138 ------LDNQLNIHQ---KNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAIT  208 (225)
Q Consensus       138 ------~~~~~~~~~---~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~  208 (225)
                            ...++...+   ..+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|. .|+ ..|+++|++
T Consensus       145 ~~~~~~~~~~L~~~~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~d~~g~tpl~~A~-~~~-~~i~~~Ll~  222 (223)
T d1uoha_         145 AKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAK-GGL-GLILKRMVE  222 (223)
T ss_dssp             HTTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHCC-TTH-HHHHHHHHC
T ss_pred             hcCCcchhhhhccccceeeeccCCCCceeccccccCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHH-CCC-HHHHhcccC
Confidence                  111222222   223468999999999999999999999999999999999999999884 455 567777775


Q ss_pred             c
Q psy10604        209 D  209 (225)
Q Consensus       209 ~  209 (225)
                      +
T Consensus       223 ~  223 (223)
T d1uoha_         223 G  223 (223)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.6e-24  Score=156.33  Aligned_cols=125  Identities=27%  Similarity=0.364  Sum_probs=113.3

Q ss_pred             ccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHh
Q psy10604         63 DCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQL  142 (225)
Q Consensus        63 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~  142 (225)
                      ..+..|+||||+|+ .|+.+++++|++++.+++..+ ..|.+|+++++..++.++++++++.|++++.++.         
T Consensus        31 ~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~l~~~~~~n~~~~---------   99 (156)
T d1bd8a_          31 ALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQD-TSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDG---------   99 (156)
T ss_dssp             CCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCT---------
T ss_pred             ccCCCCCccccccc-ccccccccccccccccccccc-cccccccccccccccccccccccccccccccccC---------
Confidence            35688999999886 588999999999999999988 8899999999999999999999999999998875         


Q ss_pred             hhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHHhhc
Q psy10604        143 NIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAITD  209 (225)
Q Consensus       143 ~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~~  209 (225)
                               .|+||||+|+..|+.+++++|+ .|++++.+|..|+||||+|+..|+. .++++|+.+
T Consensus       100 ---------~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~A~~~g~~-~iv~~Ll~h  155 (156)
T d1bd8a_         100 ---------TGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQ-DLVDILQGH  155 (156)
T ss_dssp             ---------TSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHHHHHHHSCCH-HHHHHHHTT
T ss_pred             ---------CCCeeecccccccccccccccc-ccccccccCCCCCCHHHHHHHcCCH-HHHHHHHhh
Confidence                     8999999999999999999887 7899999999999999999999996 566777754

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.92  E-value=2.3e-24  Score=171.16  Aligned_cols=148  Identities=28%  Similarity=0.367  Sum_probs=110.5

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchh---------
Q psy10604         66 SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSK---------  136 (225)
Q Consensus        66 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~---------  136 (225)
                      .++.|+|+.||..|+.++|++|+++|++++..+ ..|.||||+|+..|+.+++++|++.|+++...+....         
T Consensus        38 ~~~~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d-~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~  116 (291)
T d1s70b_          38 FDDGAVFLAACSSGDTEEVLRLLERGADINYAN-VDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASC  116 (291)
T ss_dssp             ECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBC-TTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             CCCchHHHHHHHcCCHHHHHHHHHCCCCCCccC-CCCCcHHHHHHhcCCceeeeeecccccccccccccccccccccccc
Confidence            445677888888888888888888888887777 7788888888888888888888877776554432000         


Q ss_pred             ------------------------------------hHHHH-hhhh-----------------------------hhccC
Q psy10604        137 ------------------------------------KLDNQ-LNIH-----------------------------QKNIK  150 (225)
Q Consensus       137 ------------------------------------~~~~~-~~~~-----------------------------~~~~d  150 (225)
                                                          ..... +...                             ....+
T Consensus       117 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (291)
T d1s70b_         117 GYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHA  196 (291)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCT
T ss_pred             cccchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhccccccccccc
Confidence                                                00000 0000                             01124


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHHhhcCCCCch
Q psy10604        151 NNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAITDATSLPC  215 (225)
Q Consensus       151 ~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~~~~~~~~  215 (225)
                      ..|.||||+|+..|+.+++++|+..|++++.++..|+||||+|+..|+. .++++|+..|++++.
T Consensus       197 ~~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~-~iv~lLl~~Gadv~~  260 (291)
T d1s70b_         197 KSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKE-EACRILVENLCDMEA  260 (291)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCH-HHHHHHHHTTCCTTC
T ss_pred             CCCCChhhHHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCCH-HHHHHHHHCCCCCCC
Confidence            7899999999999999999999999999999999999999999999996 566778888776643

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.92  E-value=1.6e-24  Score=164.09  Aligned_cols=123  Identities=23%  Similarity=0.244  Sum_probs=97.7

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCC---------------------------------------------
Q psy10604         65 YSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNA---------------------------------------------   99 (225)
Q Consensus        65 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~---------------------------------------------   99 (225)
                      +.+|.||||+||..|+.+++++|++.|++++..+.                                             
T Consensus        20 d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (209)
T d1ot8a_          20 DKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAAR   99 (209)
T ss_dssp             HHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTCCCHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            57799999999999999999999999999988772                                             


Q ss_pred             ---------------------CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhhhhhhccCCCCCcHHH
Q psy10604        100 ---------------------SDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALH  158 (225)
Q Consensus       100 ---------------------~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~  158 (225)
                                           ..|.|||++|+.++...+++.+++.+.+++..                  |..|.||||
T Consensus       100 ~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~------------------d~~g~TpL~  161 (209)
T d1ot8a_         100 LAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQ------------------DDKDETPLF  161 (209)
T ss_dssp             TTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCC------------------CTTCCCHHH
T ss_pred             ccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeecccccccccc------------------ccccccccc
Confidence                                 23344444444444444444444444444444                  458999999


Q ss_pred             HHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHH
Q psy10604        159 LAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSA  206 (225)
Q Consensus       159 ~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l  206 (225)
                      +|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+ |+++|
T Consensus       162 ~A~~~g~~~~v~~Ll~~gad~n~~d~~g~Tpl~~A~~~~~~~-iv~lL  208 (209)
T d1ot8a_         162 LAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHD-IVRLL  208 (209)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH-HHHHH
T ss_pred             hhccccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHH-HHhhc
Confidence            999999999999999999999999999999999999999974 55554

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=5.2e-24  Score=154.53  Aligned_cols=121  Identities=20%  Similarity=0.264  Sum_probs=106.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCCC-----CCCCCCHHHHHHHc---CCHHHHHHHHHCCCCCCCCCcchhhHHHHh
Q psy10604         71 SFLRAARAGHLDKLRELLEAGVDINTSN-----ASDPNTSFLRAARA---GHLDKLRELLEAGVDINTSNATSKKLDNQL  142 (225)
Q Consensus        71 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-----~~~g~t~Lh~A~~~---~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~  142 (225)
                      .|+.|++.+++..+..++..|.+++...     ...|.||||+|++.   ++.+++++|++.|++++.++.         
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~---------   79 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTG---------   79 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCT---------
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhh---------
Confidence            4567889999999999999998876541     26799999999985   678999999999999999886         


Q ss_pred             hhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHHhhcC
Q psy10604        143 NIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAITDA  210 (225)
Q Consensus       143 ~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~~~  210 (225)
                               .|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+. .++++|++.+
T Consensus        80 ---------~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~-~i~~~L~~~~  137 (154)
T d1dcqa1          80 ---------KGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHE-HCEELLTQAL  137 (154)
T ss_dssp             ---------TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH-HHHHHHHHHH
T ss_pred             ---------hhccccccccccccccccccccccCccccccCCCCCCHHHHHHHcCCH-HHHHHHHHhC
Confidence                     999999999999999999999999999999999999999999999996 5555665533

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=4.7e-24  Score=163.67  Aligned_cols=149  Identities=17%  Similarity=0.108  Sum_probs=94.4

Q ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCc--c-----
Q psy10604         64 CYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSN--ASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNA--T-----  134 (225)
Q Consensus        64 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~--~-----  134 (225)
                      .+.+|.||||+|+..|+.+++++|+++|++++..+  +..|.+|+|+++..+..++++.++..+...+....  .     
T Consensus        30 ~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  109 (229)
T d1ixva_          30 KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCL  109 (229)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHH
T ss_pred             cCCCCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            45556666666666666666666666666554321  14555666666666666666655555443332211  0     


Q ss_pred             -------hhhHHHHhhhhh---hccCCCCCcHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCChHHHHHHHcCChHHHH
Q psy10604        135 -------SKKLDNQLNIHQ---KNIKNNGLNALHLAAKDGHTTVVKALLKGG-CKVDASTKKGNTALHIAALDSLVTDIA  203 (225)
Q Consensus       135 -------~~~~~~~~~~~~---~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g-a~~~~~d~~g~tpL~~A~~~~~~~~i~  203 (225)
                             .......+...+   ...|..|+||||+|+..|+.+++++|+..| .+++.+|..|.||||+|+..|+.+ ++
T Consensus       110 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~-~v  188 (229)
T d1ixva_         110 HLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGD-AA  188 (229)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHH-HH
T ss_pred             ccccccchhhhhhhhhhhcccccccCCCCCCccchhhhcccccccccccccccccccccccccCCchhhhcccccHH-HH
Confidence                   011222222222   223678999999999999999999999986 678999999999999999999965 55


Q ss_pred             HHHh-hcCCCC
Q psy10604        204 SSAI-TDATSL  213 (225)
Q Consensus       204 ~~l~-~~~~~~  213 (225)
                      ++|+ +.|+.+
T Consensus       189 ~~Ll~~~gad~  199 (229)
T d1ixva_         189 VLLVEKYGAEY  199 (229)
T ss_dssp             HHHHHHHCCCS
T ss_pred             HHHHHhcCCCC
Confidence            5555 445544

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.9e-23  Score=164.95  Aligned_cols=151  Identities=25%  Similarity=0.319  Sum_probs=117.1

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCC---------------------------------------------
Q psy10604         65 YSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNA---------------------------------------------   99 (225)
Q Consensus        65 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~---------------------------------------------   99 (225)
                      +..|.||||+|+..|+.+++++|++.+......+.                                             
T Consensus        36 ~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~  115 (285)
T d1wdya_          36 EEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVY  115 (285)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHT
T ss_pred             CCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcCCccccchhhhhcccccccccCCCchhHHHHHh
Confidence            45678888888888888888888888776654432                                             


Q ss_pred             ------------------------------CCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCcch-------------
Q psy10604        100 ------------------------------SDPNTSFLRAARAGHLDKLRELLEA-GVDINTSNATS-------------  135 (225)
Q Consensus       100 ------------------------------~~g~t~Lh~A~~~~~~~iv~~Ll~~-g~~~~~~~~~~-------------  135 (225)
                                                    ..|.||||+|+++|+.+++++|++. |++++..+..+             
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~  195 (285)
T d1wdya_         116 GKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDD  195 (285)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCT
T ss_pred             cchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccc
Confidence                                          3578888888888888888888865 77776665421             


Q ss_pred             ---hhHHHHhhhhhh---ccCCCCCcHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCChHHHHHHHcCChHHHHHHHhh
Q psy10604        136 ---KKLDNQLNIHQK---NIKNNGLNALHLAAKDGHTTVVKALLKG-GCKVDASTKKGNTALHIAALDSLVTDIASSAIT  208 (225)
Q Consensus       136 ---~~~~~~~~~~~~---~~d~~g~t~L~~A~~~~~~~~~~~Ll~~-ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~  208 (225)
                         ..+.+++...+.   ..+..|.||||+|+..|+.+++++|+.. |++++.+|.+|+||||+|+..|+. .++++|++
T Consensus       196 ~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~-eiv~~Ll~  274 (285)
T d1wdya_         196 SDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLK-KIAELLCK  274 (285)
T ss_dssp             TTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCH-HHHHHHHH
T ss_pred             hHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCH-HHHHHHHH
Confidence               123344444343   3467899999999999999999999975 999999999999999999999996 57788888


Q ss_pred             cCCCCchH
Q psy10604        209 DATSLPCS  216 (225)
Q Consensus       209 ~~~~~~~~  216 (225)
                      .|+..++-
T Consensus       275 ~GAd~n~~  282 (285)
T d1wdya_         275 RGASTDCG  282 (285)
T ss_dssp             HSSCSCCS
T ss_pred             CCCCCCcc
Confidence            88887653

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=8.2e-23  Score=156.78  Aligned_cols=151  Identities=25%  Similarity=0.311  Sum_probs=126.6

Q ss_pred             CcccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchh----
Q psy10604         61 CYDCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSK----  136 (225)
Q Consensus        61 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~----  136 (225)
                      ....+.+|+||||+|+..|+.+++++|+..+.+..... ..+.+++++|+..++.+++++|++.|++++.++..+.    
T Consensus        30 ~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~Ll~~~~d~~~~d~~g~tpL~  108 (223)
T d1uoha_          30 ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKD-DAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLH  108 (223)
T ss_dssp             GGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCC-TTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred             CcCcCCCCCCHHHHHHHhhhhccccccccccccccccc-ccccccccccccccccchhHHHhccCceeEeeCCCCCchhh
Confidence            34467899999999999999999999999999988887 7899999999999999999999999999988876332    


Q ss_pred             --------hHHHHhhhhhhc---cCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHH
Q psy10604        137 --------KLDNQLNIHQKN---IKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASS  205 (225)
Q Consensus       137 --------~~~~~~~~~~~~---~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~  205 (225)
                              +..+++...+.+   .+..|.||||+|+..+..+++++|+..|.+++.+|..|.||||+|+..|+.+ ++++
T Consensus       109 ~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d~~g~TpL~~Aa~~g~~~-~v~~  187 (223)
T d1uoha_         109 YAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVE-EAKL  187 (223)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHH-HHHH
T ss_pred             HHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhccccceeeeccCCCCceeccccccCcHH-HHHH
Confidence                    244444444443   3578889999999999999999999999999999999999999999999964 5566


Q ss_pred             HhhcCCCC
Q psy10604        206 AITDATSL  213 (225)
Q Consensus       206 l~~~~~~~  213 (225)
                      |+..|++.
T Consensus       188 LL~~Gad~  195 (223)
T d1uoha_         188 LVSQGASI  195 (223)
T ss_dssp             HHHTTCCS
T ss_pred             HHHCCCCC
Confidence            66666554

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=7.2e-24  Score=162.35  Aligned_cols=144  Identities=21%  Similarity=0.152  Sum_probs=118.7

Q ss_pred             ccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcc--------
Q psy10604         63 DCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNAT--------  134 (225)
Q Consensus        63 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~--------  134 (225)
                      ..+.+|+||||+|+..|+.+++++|++.|++++..+ ..|.||||+|+..++.++++.|+..+.........        
T Consensus        34 ~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d-~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  112 (221)
T d1iknd_          34 FQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRD-FRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGH  112 (221)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCC-TTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCC
T ss_pred             cCCCCCCccccccccccccccccccccccccccccc-cccccccccccccccccccchhhhhcccccccccccccccccc
Confidence            357889999999999999999999999999999998 89999999999999999999999987665433221        


Q ss_pred             ----------hhhHHHHhhhhhhcc----CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChH
Q psy10604        135 ----------SKKLDNQLNIHQKNI----KNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVT  200 (225)
Q Consensus       135 ----------~~~~~~~~~~~~~~~----d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~  200 (225)
                                ......++...+...    +.+|+||||+|+..|+.+++++|+++|+|++.+|..|+||||+|+..++. 
T Consensus       113 t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~~~~~~G~tpl~~A~~~~~~-  191 (221)
T d1iknd_         113 TCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPST-  191 (221)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCH-
T ss_pred             hhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHHHHHHHhcCCcccccCCCCCCHHHHHHHCCCH-
Confidence                      112233334443332    35799999999999999999999999999999999999999999999996 


Q ss_pred             HHHHHHhh
Q psy10604        201 DIASSAIT  208 (225)
Q Consensus       201 ~i~~~l~~  208 (225)
                      .++++|..
T Consensus       192 ~~~~~l~~  199 (221)
T d1iknd_         192 RIQQQLGQ  199 (221)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHH
Confidence            45545544

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=3e-23  Score=166.27  Aligned_cols=129  Identities=19%  Similarity=0.205  Sum_probs=99.3

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCH-------HHHHHHHHCCCCCCCCCcchhh
Q psy10604         65 YSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHL-------DKLRELLEAGVDINTSNATSKK  137 (225)
Q Consensus        65 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~-------~iv~~Ll~~g~~~~~~~~~~~~  137 (225)
                      +..|+||||+||..|+.++|++|+++|++++.++ ..|+||||.||..++.       ++++++.......+......-+
T Consensus       104 D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d-~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~d~~g~t~lh  182 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGD-NMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILH  182 (301)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCC-TTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCC-cccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhcccccCCHHH
Confidence            6889999999999999999999999999999998 8899999999987652       4555544322222221110000


Q ss_pred             -------------------------------------------------------------HHHHhhhhhhccCCCCCcH
Q psy10604        138 -------------------------------------------------------------LDNQLNIHQKNIKNNGLNA  156 (225)
Q Consensus       138 -------------------------------------------------------------~~~~~~~~~~~~d~~g~t~  156 (225)
                                                                                   .........+..|..|+||
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~G~Tp  262 (301)
T d1sw6a_         183 HIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTC  262 (301)
T ss_dssp             HHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCH
T ss_pred             HHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCCCCCH
Confidence                                                                         0000111134558899999


Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHH
Q psy10604        157 LHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAA  194 (225)
Q Consensus       157 L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~  194 (225)
                      ||+|++.|+.+++++|+++|++++.+|..|.|||++|+
T Consensus       263 Lh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         263 LNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             HHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence            99999999999999999999999999999999999985

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2e-22  Score=166.65  Aligned_cols=119  Identities=27%  Similarity=0.376  Sum_probs=88.3

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhhh
Q psy10604         65 YSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNI  144 (225)
Q Consensus        65 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~~  144 (225)
                      +..|.||++.|+..++.+++++|+++|++++..+ ..+.||||+|+..++.++++++++.|++++.++            
T Consensus       261 ~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~-~~~~t~L~~~~~~~~~~~~~~ll~~g~~in~~d------------  327 (408)
T d1n11a_         261 NKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATT-RMGYTPLHVASHYGNIKLVKFLLQHQADVNAKT------------  327 (408)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCC-SSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCC------------
T ss_pred             cCCCCChhhhhhhcCcHHHHHHHHHCCCcccccc-ccccccchhhcccCcceeeeeeccccccccccC------------
Confidence            3445555666666566666666665555555555 455566666666665556666665555555555            


Q ss_pred             hhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHH
Q psy10604        145 HQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDI  202 (225)
Q Consensus       145 ~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i  202 (225)
                            ..|.||||+|+..|+.+++++|+++|++++.+|.+|.||||+|+..|+.+.+
T Consensus       328 ------~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~~G~t~L~~A~~~~~~~iv  379 (408)
T d1n11a_         328 ------KLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVT  379 (408)
T ss_dssp             ------TTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCHHHH
T ss_pred             ------CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHH
Confidence                  4999999999999999999999999999999999999999999999997544

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=5.3e-23  Score=157.44  Aligned_cols=145  Identities=23%  Similarity=0.209  Sum_probs=113.5

Q ss_pred             CCchHHHHHHHcCCH----HHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHH---
Q psy10604         67 DPNTSFLRAARAGHL----DKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLD---  139 (225)
Q Consensus        67 ~g~t~L~~A~~~g~~----~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~---  139 (225)
                      +|.||||+|+..|+.    ++++++...|++++..+ ..|.||||+|+..|+.+++++|++.|++++.++..+...+   
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d-~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~   79 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQN-NLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLA   79 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCC-TTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCC-CCCCccccccccccccccccccccccccccccccccccccccc
Confidence            689999999999985    55667778899999998 8999999999999999999999999999998876443211   


Q ss_pred             ---------HHhhhhh---------hccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCChHHHHHHHcCChH
Q psy10604        140 ---------NQLNIHQ---------KNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDAST-KKGNTALHIAALDSLVT  200 (225)
Q Consensus       140 ---------~~~~~~~---------~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d-~~g~tpL~~A~~~~~~~  200 (225)
                               ..+...+         ......|.||||.|+..++.+++.+|+..|+.++..+ ..|.||||+|+..|+. 
T Consensus        80 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~-  158 (221)
T d1iknd_          80 CEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNP-  158 (221)
T ss_dssp             HHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCH-
T ss_pred             cccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccH-
Confidence                     1111111         1123568999999999999999999999999998765 5799999999999996 


Q ss_pred             HHHHHHhhcCCCC
Q psy10604        201 DIASSAITDATSL  213 (225)
Q Consensus       201 ~i~~~l~~~~~~~  213 (225)
                      .++++|+..|+++
T Consensus       159 ~~v~~Ll~~gad~  171 (221)
T d1iknd_         159 DLVSLLLKCGADV  171 (221)
T ss_dssp             HHHHHHHTTTCCS
T ss_pred             HHHHHHHhcCCcc
Confidence            5666776666554

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2.1e-21  Score=160.40  Aligned_cols=147  Identities=28%  Similarity=0.352  Sum_probs=87.3

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHH-----
Q psy10604         65 YSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLD-----  139 (225)
Q Consensus        65 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~-----  139 (225)
                      +..|+||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|+..+.++...........     
T Consensus        30 d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~~-~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~  108 (408)
T d1n11a_          30 NVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKA-KDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAR  108 (408)
T ss_dssp             SSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCC-TTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCC-CCCCCHHHHHHHcCCHHHHHHHHHhhhccccccccccchhhhhhh
Confidence            4445555555555555555555555555555555 4555555555555555555555554443332221000000     


Q ss_pred             ----------HHhhhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHHhhc
Q psy10604        140 ----------NQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAITD  209 (225)
Q Consensus       140 ----------~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~~  209 (225)
                                ..........+..+.++++.|+..++.+++++|+++|++++..+..|.+||++|+..|+.+ ++++|+..
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~L~~A~~~~~~~-~~~~Ll~~  187 (408)
T d1n11a_         109 EGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLD-IVKLLLPR  187 (408)
T ss_dssp             HTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHH-HHHHHGGG
T ss_pred             hcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCcCchHHHHHHHcCCHH-HHHHHHhc
Confidence                      0000111223567888888888888888888888888888888888889999998888864 45555555


Q ss_pred             CCCC
Q psy10604        210 ATSL  213 (225)
Q Consensus       210 ~~~~  213 (225)
                      +...
T Consensus       188 g~~~  191 (408)
T d1n11a_         188 GGSP  191 (408)
T ss_dssp             TCCS
T ss_pred             CCcc
Confidence            4443

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.4e-21  Score=141.75  Aligned_cols=120  Identities=23%  Similarity=0.327  Sum_probs=109.9

Q ss_pred             hHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhhhhhhc
Q psy10604         70 TSFLRAARAGHLDKLRELLEA-GVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKN  148 (225)
Q Consensus        70 t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~  148 (225)
                      +.|+.||..|+.++|++|+.+ +.+++..+ ..|+||||+|+ +++.+++++|++.+.+++..+.               
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d-~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~---------------   66 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALN-RFGKTALQVMM-FGSTAIALELLKQGASPNVQDT---------------   66 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCC-TTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCT---------------
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccC-CCCCccccccc-cccccccccccccccccccccc---------------
Confidence            569999999999999999985 78999998 89999999987 5889999999999999998875               


Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHHHHhhcC
Q psy10604        149 IKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIASSAITDA  210 (225)
Q Consensus       149 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~~~  210 (225)
                         .|.+|+++++..++.+++++++++|++++.+|..|.||||+|+..|+.+ ++++|+.++
T Consensus        67 ---~~~~~l~~~~~~~~~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~-i~~~L~~~~  124 (156)
T d1bd8a_          67 ---SGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTA-VVSFLAAES  124 (156)
T ss_dssp             ---TSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHH-HHHHHHTTS
T ss_pred             ---ccccccccccccccccccccccccccccccccCCCCeeecccccccccc-ccccccccc
Confidence               8999999999999999999999999999999999999999999999975 557777654

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.87  E-value=5.2e-22  Score=157.38  Aligned_cols=133  Identities=24%  Similarity=0.317  Sum_probs=113.7

Q ss_pred             cccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCc--------
Q psy10604         62 YDCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNA--------  133 (225)
Q Consensus        62 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~--------  133 (225)
                      ...+.+|.||||+|+..|+.+++++|+++|.+....+ ..+.|||++|+..++.++++.|++.|+..+..+.        
T Consensus        67 n~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~-~~~~~~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  145 (291)
T d1s70b_          67 NYANVDGLTALHQACIDDNVDMVKFLVENGANINQPD-NEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDI  145 (291)
T ss_dssp             TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CccCCCCCcHHHHHHhcCCceeeeeeccccccccccc-ccccccccccccccccchhhcccccCcccccccccCcccccc
Confidence            3457889999999999999999999999999998887 8899999999999999999999999887765543        


Q ss_pred             ----------------------------------------------------------------chhhHHHHhhhhhhc-
Q psy10604        134 ----------------------------------------------------------------TSKKLDNQLNIHQKN-  148 (225)
Q Consensus       134 ----------------------------------------------------------------~~~~~~~~~~~~~~~-  148 (225)
                                                                                      ........+...+.+ 
T Consensus       146 a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~di  225 (291)
T d1s70b_         146 AEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDV  225 (291)
T ss_dssp             CCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCT
T ss_pred             ccccccchhccccccccccccccccccccccccccchhhhcccccccccccCCCCChhhHHHHcCChhhhcccccceecc
Confidence                                                                            001233444444433 


Q ss_pred             --cCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHH
Q psy10604        149 --IKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAAL  195 (225)
Q Consensus       149 --~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~  195 (225)
                        .+..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.
T Consensus       226 n~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~G~TaL~~A~e  274 (291)
T d1s70b_         226 NIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE  274 (291)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCS
T ss_pred             cccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence              46889999999999999999999999999999999999999999975

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=2.4e-21  Score=140.30  Aligned_cols=97  Identities=16%  Similarity=0.182  Sum_probs=90.0

Q ss_pred             cCCCCchHHHHHHHc---CCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHH
Q psy10604         64 CYSDPNTSFLRAARA---GHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDN  140 (225)
Q Consensus        64 ~~~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~  140 (225)
                      .+..|.||||+|+..   |+.+++++|+++|++++.++ ..|.||||+|+..|+.+++++|++.|++++.++.       
T Consensus        41 ~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d-~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~-------  112 (154)
T d1dcqa1          41 GHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQT-GKGSTALHYCCLTDNAECLKLLLRGKASIEIANE-------  112 (154)
T ss_dssp             CSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCC-TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-------
T ss_pred             CCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhh-hhhccccccccccccccccccccccCccccccCC-------
Confidence            466789999999985   67899999999999999998 8999999999999999999999999999999886       


Q ss_pred             HhhhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCC
Q psy10604        141 QLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKV  179 (225)
Q Consensus       141 ~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~  179 (225)
                                 .|+||||+|+..|+.+++++|++.++..
T Consensus       113 -----------~g~tpL~~A~~~~~~~i~~~L~~~~~~~  140 (154)
T d1dcqa1         113 -----------SGETPLDIAKRLKHEHCEELLTQALSGR  140 (154)
T ss_dssp             -----------TSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             -----------CCCCHHHHHHHcCCHHHHHHHHHhCCCC
Confidence                       9999999999999999999999986654

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=1.7e-21  Score=149.18  Aligned_cols=126  Identities=20%  Similarity=0.244  Sum_probs=112.6

Q ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCCCcchhhHHHHh
Q psy10604         64 CYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAG-VDINTSNATSKKLDNQL  142 (225)
Q Consensus        64 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g-~~~~~~~~~~~~~~~~~  142 (225)
                      .+..+.++++.++..++.+++++|+..|.+.+..+ ..|.||||+|+.+|+.+++++|++.+ .+++.++.         
T Consensus       101 ~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~---------  170 (229)
T d1ixva_         101 ITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKD-KFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDK---------  170 (229)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCC-TTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCT---------
T ss_pred             cccccccccccccccchhhhhhhhhhhcccccccC-CCCCCccchhhhccccccccccccccccccccccc---------
Confidence            45667899999999999999999999999998888 88999999999999999999999886 56777775         


Q ss_pred             hhhhhccCCCCCcHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCChHHHHHHHcCChHHHHHHHhhcCCC
Q psy10604        143 NIHQKNIKNNGLNALHLAAKDGHTTVVKALLK-GGCKVDASTKKGNTALHIAALDSLVTDIASSAITDATS  212 (225)
Q Consensus       143 ~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~-~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~~~~~  212 (225)
                               .|+||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+.    ..++++|+.+|.+
T Consensus       171 ---------~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~----~~~~~~Ll~~g~d  228 (229)
T d1ixva_         171 ---------QGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN----EQVKKFFLNNVVD  228 (229)
T ss_dssp             ---------TSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCSC----HHHHHHHHHHCCC
T ss_pred             ---------ccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHhh----HHHHHHHHHcCCC
Confidence                     99999999999999999999996 599999999999999999984    3678888887753

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.85  E-value=2.1e-23  Score=170.48  Aligned_cols=129  Identities=19%  Similarity=0.127  Sum_probs=106.9

Q ss_pred             cCCCCchHHHHHHHcCCHHHHHH---HHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHH
Q psy10604         64 CYSDPNTSFLRAARAGHLDKLRE---LLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDN  140 (225)
Q Consensus        64 ~~~~g~t~L~~A~~~g~~~~v~~---Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~  140 (225)
                      .+..|.||||+||+.|+.+++++   |++.|++++..+ ..|+||||+|++.|+.++|++|++.|++++..+.       
T Consensus        86 ~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~-~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~-------  157 (346)
T d2ajaa1          86 KGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQ-AENYQAFRLAAENGHLHVLNRLCELAPTEIMAMI-------  157 (346)
T ss_dssp             HTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--C-HHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHH-------
T ss_pred             ccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccC-CCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccc-------
Confidence            46789999999999999877665   788999999998 8999999999999999999999999999887653       


Q ss_pred             HhhhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCC---CCCCCCCChHHHHHHHcCChHHHHHHHhhcC
Q psy10604        141 QLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKV---DASTKKGNTALHIAALDSLVTDIASSAITDA  210 (225)
Q Consensus       141 ~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~---~~~d~~g~tpL~~A~~~~~~~~i~~~l~~~~  210 (225)
                               +..|+||||+|+..|+.+++++|++.|++.   +..+..|.||+++|+.+|+. .++++|+..|
T Consensus       158 ---------~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~-~iv~~Ll~~g  220 (346)
T d2ajaa1         158 ---------QAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHH-NVINFLLDCP  220 (346)
T ss_dssp             ---------SHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCH-HHHHHHTTSH
T ss_pred             ---------ccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHH-HHHHHHHhCC
Confidence                     125899999999999999999999999875   34456678888999999996 5667776654

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=8.3e-21  Score=147.58  Aligned_cols=97  Identities=24%  Similarity=0.206  Sum_probs=92.3

Q ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhh
Q psy10604         64 CYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLN  143 (225)
Q Consensus        64 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~  143 (225)
                      .+.+|.||||+|+..|+.+++++|++.+++.+..+...|.||||+|+..|+.+++++|+++|++++.++.          
T Consensus       154 ~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~----------  223 (255)
T d1oy3d_         154 ENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMY----------  223 (255)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----------
T ss_pred             ccccCcccccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCCCCCCC----------
Confidence            5788999999999999999999999999999887668899999999999999999999999999999885          


Q ss_pred             hhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCC
Q psy10604        144 IHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCK  178 (225)
Q Consensus       144 ~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~  178 (225)
                              .|.||||+|+..++.+++++|+++||+
T Consensus       224 --------~g~t~L~~A~~~~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         224 --------GGRTPLGSALLRPNPILARLLRAHGAP  250 (255)
T ss_dssp             --------TSCCHHHHHHTSSCHHHHHHHHHTTCC
T ss_pred             --------CCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence                    899999999999999999999999997

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.84  E-value=1.9e-21  Score=134.65  Aligned_cols=93  Identities=25%  Similarity=0.408  Sum_probs=85.5

Q ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhhhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCC
Q psy10604        103 NTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDAS  182 (225)
Q Consensus       103 ~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~  182 (225)
                      .|||++|++.|+.+++++|++.|++++.++.                  .|+||||+|+..|+.+++++|+++|++++.+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~------------------~g~t~lh~A~~~~~~~~~~~ll~~g~din~~   64 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLE------------------GGRKPLHYAADCGQLEILEFLLLKGADINAP   64 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSS------------------SSCCTTHHHHHHSTTTHHHHHHHSSCTTTCC
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccccccc------------------cccccccccccccccccccccccccceeeec
Confidence            4899999999999999999999999999886                  9999999999999999999999999999999


Q ss_pred             CCCCChHHHHHHHcCChHHHHHHHhhcCCCCc
Q psy10604        183 TKKGNTALHIAALDSLVTDIASSAITDATSLP  214 (225)
Q Consensus       183 d~~g~tpL~~A~~~~~~~~i~~~l~~~~~~~~  214 (225)
                      |..|+||||+|+..|+. .++++|+..|+.++
T Consensus        65 d~~g~tpLh~A~~~~~~-~~v~~Ll~~Gad~~   95 (118)
T d1myoa_          65 DKHHITPLLSAVYEGHV-SCVKLLLSKGADKT   95 (118)
T ss_dssp             SSSCSCHHHHHHTTTCC-HHHHHHHTTCCCSS
T ss_pred             ccccccchhhhhhcCch-hhhhhhhcccccce
Confidence            99999999999999996 56777777776553

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.84  E-value=3.7e-21  Score=145.28  Aligned_cols=132  Identities=27%  Similarity=0.365  Sum_probs=108.3

Q ss_pred             HHHHHHHHHcCCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchh-----------------------
Q psy10604         81 LDKLRELLEAGVDINTS-NASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSK-----------------------  136 (225)
Q Consensus        81 ~~~v~~Ll~~g~~~~~~-~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~-----------------------  136 (225)
                      .++|++|+++|++++.. + .+|.||||+||.+|+.+++++|++.|++++.++....                       
T Consensus         2 ~~~v~~Ll~~g~din~~~d-~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATMD-KTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRA   80 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTT
T ss_pred             HHHHHHHHHCCCCcCcCcC-CCCCCHHHHHHHcCCHHHHHHHHhhccccccccccccccccccccccccccccccccccc
Confidence            58999999999999874 5 7899999999999999999999999999987765111                       


Q ss_pred             -----------------------hHHHHhhhh---hhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHH
Q psy10604        137 -----------------------KLDNQLNIH---QKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTAL  190 (225)
Q Consensus       137 -----------------------~~~~~~~~~---~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL  190 (225)
                                             .....+...   ...++..|+|||++++..+..++++.++..+++++..|..|.|||
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL  160 (209)
T d1ot8a_          81 TNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPL  160 (209)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHH
T ss_pred             cccccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeecccccccccccccccccc
Confidence                                   011112222   234568899999999999999999999999999999999999999


Q ss_pred             HHHHHcCChHHHHHHHhhcCCCCc
Q psy10604        191 HIAALDSLVTDIASSAITDATSLP  214 (225)
Q Consensus       191 ~~A~~~~~~~~i~~~l~~~~~~~~  214 (225)
                      |+|+..|+. .++++|+..|++++
T Consensus       161 ~~A~~~g~~-~~v~~Ll~~gad~n  183 (209)
T d1ot8a_         161 FLAAREGSY-EASKALLDNFANRE  183 (209)
T ss_dssp             HHHHHTTCH-HHHHHHHHTTCCTT
T ss_pred             chhccccHH-HHHHHHHHCCCCCC
Confidence            999999996 55566677666553

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.5e-20  Score=132.30  Aligned_cols=91  Identities=29%  Similarity=0.392  Sum_probs=84.0

Q ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhhhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC
Q psy10604        104 TSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDAST  183 (225)
Q Consensus       104 t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d  183 (225)
                      ++||.|+..|+.+++++|++.|++++.++.                  .|+||||+|+..++.+++++|+++|++++.+|
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~------------------~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d   64 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPND------------------EGITALHNAVCAGHTEIVKFLVQFGVNVNAAD   64 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCT------------------TSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCC
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCcccccc------------------cccccccccccccccccccccccccccccccc
Confidence            679999999999999999999999999886                  99999999999999999999999999999999


Q ss_pred             CCCChHHHHHHHcCChHHHHHHHhhcCCCC
Q psy10604        184 KKGNTALHIAALDSLVTDIASSAITDATSL  213 (225)
Q Consensus       184 ~~g~tpL~~A~~~~~~~~i~~~l~~~~~~~  213 (225)
                      .+|+||||+|+.+|+. .++++|+..|+.+
T Consensus        65 ~~g~tpLh~A~~~g~~-~~v~~Ll~~ga~v   93 (130)
T d1ycsb1          65 SDGWTPLHCAASCNNV-QVCKFLVESGAAV   93 (130)
T ss_dssp             TTCCCHHHHHHHTTCH-HHHHHHHHTTCCT
T ss_pred             ccCcccccccchhhHH-HHHHHHHHcCCCc
Confidence            9999999999999996 5667777766554

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.80  E-value=4.6e-21  Score=150.48  Aligned_cols=115  Identities=22%  Similarity=0.243  Sum_probs=98.0

Q ss_pred             hHHHHHH-HcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH--------HHCCCCCCCCCcchhhHHH
Q psy10604         70 TSFLRAA-RAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLREL--------LEAGVDINTSNATSKKLDN  140 (225)
Q Consensus        70 t~L~~A~-~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~L--------l~~g~~~~~~~~~~~~~~~  140 (225)
                      ||||+++ ..|+.++++.|.+.+++...  ...|+||||+|+.+|+.+++++|        ++.|++++.++.       
T Consensus         2 ~p~~~~~~~~~~~~~~~~l~~~~~n~~~--~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~-------   72 (277)
T d2fo1e1           2 SPIKLHTEAAGSYAITEPITRESVNIID--PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDC-------   72 (277)
T ss_dssp             CCCHHHHHHHSSSCCCSCCSTTTTTTCC--CSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCT-------
T ss_pred             ChHHHHHHhCCCHHHHHHHHhcCCCcCC--CCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCC-------
Confidence            6777554 35677888888887766543  34699999999999999988776        567999999886       


Q ss_pred             HhhhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCChHHHHH
Q psy10604        141 QLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGGCKVDASTKKGNTALHIAALDSLVTDIAS  204 (225)
Q Consensus       141 ~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~i~~  204 (225)
                                 .|+||||+|+..|+.+++++|+++|++++.+|..|.|||++|...++.+.+..
T Consensus        73 -----------~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a~~~~~~~~~~~  125 (277)
T d2fo1e1          73 -----------DENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVY  125 (277)
T ss_dssp             -----------TSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred             -----------CCCeeeccccccccccccccccccccccccccccccccccchhhhcchhhhhh
Confidence                       99999999999999999999999999999999999999999999999655443

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.1e-19  Score=126.89  Aligned_cols=93  Identities=26%  Similarity=0.257  Sum_probs=84.5

Q ss_pred             ccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHh
Q psy10604         63 DCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQL  142 (225)
Q Consensus        63 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~  142 (225)
                      ..+..|.||||+|+ .|+.+++++|++.|++++..+...+.||||+|++.|+.+++++|++.|++++.++.         
T Consensus        31 ~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~---------  100 (125)
T d1bi7b_          31 APNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDA---------  100 (125)
T ss_dssp             CCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCT---------
T ss_pred             cccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccC---------
Confidence            35678999999775 79999999999999999999844455799999999999999999999999999886         


Q ss_pred             hhhhhccCCCCCcHHHHHHHcCCHHHHHHHHH
Q psy10604        143 NIHQKNIKNNGLNALHLAAKDGHTTVVKALLK  174 (225)
Q Consensus       143 ~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~  174 (225)
                               .|+||||+|+..|+.+++++|+.
T Consensus       101 ---------~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_         101 ---------WGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             ---------TCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ---------CCCCHHHHHHHcCCHHHHHHHHh
Confidence                     99999999999999999999975

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.78  E-value=1.1e-20  Score=154.08  Aligned_cols=144  Identities=19%  Similarity=0.101  Sum_probs=104.3

Q ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCC-CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCC---cch----
Q psy10604         64 CYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNA-SDPNTSFLRAARAGHLDKLRELLEAGVDINTSN---ATS----  135 (225)
Q Consensus        64 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~-~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~---~~~----  135 (225)
                      .+.+|.||||+||..|+.++|++|++.|++++..+. ..|.||||+|+..|+.++|++|++.|+.....+   ..+    
T Consensus       122 ~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l  201 (346)
T d2ajaa1         122 IQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFR  201 (346)
T ss_dssp             -CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchh
Confidence            567889999999999999999999999999877641 358999999999999999999999987643211   110    


Q ss_pred             --------hhHHHHhhhhhhcc------------------------------------CC----------------CCCc
Q psy10604        136 --------KKLDNQLNIHQKNI------------------------------------KN----------------NGLN  155 (225)
Q Consensus       136 --------~~~~~~~~~~~~~~------------------------------------d~----------------~g~t  155 (225)
                              .+..+++...+.+.                                    ..                .+.+
T Consensus       202 ~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~  281 (346)
T d2ajaa1         202 WAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLR  281 (346)
T ss_dssp             HHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHH
T ss_pred             hHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhHHHHHhhccchHHHHHHHHhcccccHhHHhcccccccchhhh
Confidence                    11222221111000                                    01                1236


Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCC-----CCCCCCCCChHHHHHHHcCChHHHHHHHhh
Q psy10604        156 ALHLAAKDGHTTVVKALLKGGCK-----VDASTKKGNTALHIAALDSLVTDIASSAIT  208 (225)
Q Consensus       156 ~L~~A~~~~~~~~~~~Ll~~ga~-----~~~~d~~g~tpL~~A~~~~~~~~i~~~l~~  208 (225)
                      +++.|...+..+++++|++.|..     ....+.+|+||||+|++.|+. .++++|+.
T Consensus       282 ~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~LhlA~~~Gn~-e~v~lLL~  338 (346)
T d2ajaa1         282 NLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQ-GACALLLS  338 (346)
T ss_dssp             HHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCT-THHHHHTT
T ss_pred             HHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcHHHHHHHcCcH-HHHHHHhC
Confidence            77778888889999999987764     345566899999999999996 56666654

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=2.1e-18  Score=135.63  Aligned_cols=83  Identities=28%  Similarity=0.403  Sum_probs=70.1

Q ss_pred             HHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCcchhhHHHHhhhhhhccCCCCCcHHHHHH
Q psy10604         83 KLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEA-GVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAA  161 (225)
Q Consensus        83 ~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~-g~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~  161 (225)
                      ++++|+++|++++.++ ..|.||||+|+..|+.+++++|++. |++++.++.                  +|+||||+|+
T Consensus       201 i~~~Li~~ga~~n~~~-~~g~t~L~~a~~~~~~~~v~~lL~~~g~din~~d~------------------~G~TpL~~A~  261 (285)
T d1wdya_         201 ITHLLLDHGADVNVRG-ERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDS------------------DGKTALLLAV  261 (285)
T ss_dssp             HHHHHHHTTCCSSCCC-TTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCT------------------TSCCHHHHHH
T ss_pred             HHHHHHHCCCCCCccC-CCCCCccchhhhcCcHHHHHHHHHcCCCCCcCCCC------------------CCCCHHHHHH
Confidence            3444445556666665 6889999999999999999999975 889888775                  9999999999


Q ss_pred             HcCCHHHHHHHHHCCCCCCCCCC
Q psy10604        162 KDGHTTVVKALLKGGCKVDASTK  184 (225)
Q Consensus       162 ~~~~~~~~~~Ll~~ga~~~~~d~  184 (225)
                      ..|+.+++++|+++||+++..|.
T Consensus       262 ~~~~~eiv~~Ll~~GAd~n~~d~  284 (285)
T d1wdya_         262 ELKLKKIAELLCKRGASTDCGDL  284 (285)
T ss_dssp             HTTCHHHHHHHHHHSSCSCCSSC
T ss_pred             HcCCHHHHHHHHHCCCCCCcccC
Confidence            99999999999999999999874

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1e-16  Score=115.14  Aligned_cols=112  Identities=26%  Similarity=0.281  Sum_probs=93.4

Q ss_pred             ccCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchh------
Q psy10604         63 DCYSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSK------  136 (225)
Q Consensus        63 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~------  136 (225)
                      ..+.+|.||||+|+ .|+.+++++|++.|++++..+ ..|.++|+.++..++..++++|+..+.+++..+..+.      
T Consensus        29 ~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~-~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a  106 (156)
T d1ihba_          29 AQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKD-RTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLA  106 (156)
T ss_dssp             CCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             ccCCcccccccccc-ccccccccccccccccccccc-ccCcccccccccccccccccccccccccccccccccccccccc
Confidence            35788999999886 799999999999999999998 8899999999999999999999999998887765322      


Q ss_pred             ------hHHHHhhhh----hhccCCCCCcHHHHHHHcCCHHHHHHHHHCC
Q psy10604        137 ------KLDNQLNIH----QKNIKNNGLNALHLAAKDGHTTVVKALLKGG  176 (225)
Q Consensus       137 ------~~~~~~~~~----~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g  176 (225)
                            +....+...    ...+|..|.||||+|+..++.+++++|+++|
T Consensus       107 ~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_         107 AKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             HHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             cccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence                  222333222    2445788999999999999999999999987

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.69  E-value=9.2e-17  Score=128.04  Aligned_cols=124  Identities=15%  Similarity=0.169  Sum_probs=92.6

Q ss_pred             HcCCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchh-------------------hHHHHhhhhhhc
Q psy10604         89 EAGVDINTS-NASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSK-------------------KLDNQLNIHQKN  148 (225)
Q Consensus        89 ~~g~~~~~~-~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~-------------------~~~~~~~~~~~~  148 (225)
                      ..+.+++.. | ..|+||||+||..|+.++|++|++.|++++.++..+.                   .++.++......
T Consensus        94 ~~~~dvn~~~D-~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~  172 (301)
T d1sw6a_          94 NTQLNLNIPVD-EHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLIL  172 (301)
T ss_dssp             TSCCCSCSCCS-TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGE
T ss_pred             ccCCCcCcCcC-CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhhhhh
Confidence            356788765 5 7899999999999999999999999999998876332                   233344445566


Q ss_pred             cCCCCCcHHHHHHHcCC----HH--------HHHHHHHCCCC-------------------------------------C
Q psy10604        149 IKNNGLNALHLAAKDGH----TT--------VVKALLKGGCK-------------------------------------V  179 (225)
Q Consensus       149 ~d~~g~t~L~~A~~~~~----~~--------~~~~Ll~~ga~-------------------------------------~  179 (225)
                      .|..|+||||+++..+.    ..        ++.+++..+..                                     +
T Consensus       173 ~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  252 (301)
T d1sw6a_         173 EDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANML  252 (301)
T ss_dssp             ECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTT
T ss_pred             cccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCc
Confidence            78889999998876543    22        22344443332                                     6


Q ss_pred             CCCCCCCChHHHHHHHcCChHHHHHHHhhcCCCCc
Q psy10604        180 DASTKKGNTALHIAALDSLVTDIASSAITDATSLP  214 (225)
Q Consensus       180 ~~~d~~g~tpL~~A~~~~~~~~i~~~l~~~~~~~~  214 (225)
                      +.+|.+|+||||+|+..|+. .++++|+..|+..+
T Consensus       253 n~~D~~G~TpLh~A~~~g~~-~iv~~Ll~~GAd~~  286 (301)
T d1sw6a_         253 NAQDSNGDTCLNIAARLGNI-SIVDALLDYGADPF  286 (301)
T ss_dssp             TCCCTTSCCHHHHHHHHCCH-HHHHHHHHTTCCTT
T ss_pred             cCCCCCCCCHHHHHHHcCCH-HHHHHHHHCCCCCC
Confidence            88999999999999999996 57777777776654

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=3.1e-16  Score=112.21  Aligned_cols=89  Identities=22%  Similarity=0.325  Sum_probs=76.8

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCcchhhHHHHhhh
Q psy10604         65 YSDPNTSFLRAARAGHLDKLRELLEAGVDINTSNASDPNTSFLRAARAGHLDKLRELLEAGVDINTSNATSKKLDNQLNI  144 (225)
Q Consensus        65 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~~~~~  144 (225)
                      ...+.++++.++...+.+++++++..|++++..+ ..|.||||+|+..|+.+++++|++.|++++.++.           
T Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~-----------  131 (153)
T d1awcb_          64 TKVDRTPLHMAASEGHANIVEVLLKHGADVNAKD-MLKMTALHWATEHNHQEVVELLIKYGADVHTQSK-----------  131 (153)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCC-TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-----------
T ss_pred             ccccccccccccccccceeeecccccCCcccccc-ccCchHHHhhhhcchhheeeeccccccCCcccCC-----------
Confidence            3344555666666666677778888889998888 8999999999999999999999999999999886           


Q ss_pred             hhhccCCCCCcHHHHHHHcCCHHHHHHH
Q psy10604        145 HQKNIKNNGLNALHLAAKDGHTTVVKAL  172 (225)
Q Consensus       145 ~~~~~d~~g~t~L~~A~~~~~~~~~~~L  172 (225)
                             .|.||||+|+..|+.+++++|
T Consensus       132 -------~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_         132 -------FCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             -------TSCCHHHHHHHTTCHHHHHHH
T ss_pred             -------CCCCHHHHHHHcCCHHHHHhC
Confidence                   999999999999999999987

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=2.3e-15  Score=112.76  Aligned_cols=88  Identities=26%  Similarity=0.322  Sum_probs=80.0

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHH----CCCCCCCCCcchhhHHHHhhhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHCC
Q psy10604        101 DPNTSFLRAARAGHLDKLRELLE----AGVDINTSNATSKKLDNQLNIHQKNIKNNGLNALHLAAKDGHTTVVKALLKGG  176 (225)
Q Consensus       101 ~g~t~Lh~A~~~~~~~iv~~Ll~----~g~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g  176 (225)
                      +|.||||+||.+|+.++++.|++    .|++++.++.                  .|+||||+|+..|+.+++++|+++|
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~------------------~g~TpL~~A~~~~~~~iv~~Ll~~g   63 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNN------------------LRQTPLHLAVITTLPSVVRLLVTAG   63 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCT------------------TSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCC------------------CCCccceehhccccccccccccccc
Confidence            59999999999999999998874    7999998886                  9999999999999999999999999


Q ss_pred             CCCCCCCCCCChHHHHHHHcCChHHHHHHH
Q psy10604        177 CKVDASTKKGNTALHIAALDSLVTDIASSA  206 (225)
Q Consensus       177 a~~~~~d~~g~tpL~~A~~~~~~~~i~~~l  206 (225)
                      ++.+..+..|.++++.|...++.+.+....
T Consensus        64 a~~~~~~~~~~~~~~~a~~~~~~~~~~~~~   93 (228)
T d1k1aa_          64 ASPMALDRHGQTAAHLACEHRSPTCLRALL   93 (228)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             ccccccccccccccccccccccccchhhhh
Confidence            999999999999999999999976554443