Psyllid ID: psy10644

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190------
Protein Sequence
MKLDQPMGSETAHSTSTSNSNVPNILATSSGGHKKEKYYNSKHTPLREKLLNKLKSARFRYLNEQLYTSKSEESKDFFTEDRESFEAYHEGFKKQVTQWPINPVDIIIKSIQERESKGRLVIADLGCGEAKLAAELTQHKVHSLDLVALNERVTSCDMTRTPLKPYSVDVAVFCLSLMGTDLAACIKEANRILKLG
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccHHHHHHHHccccHHHHHHHHHHcHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccEEEEEccccHHHHHHHHccccEEEEEcccccccEEEEcccccccccccccEEEEEcccccccHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccccEEEEEccccHHHHHHHcccccEEEEEcccccccEEEEEccccccccccccEEEEEHHHccccHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mkldqpmgsetahststsnsnvpnilatssgghkkekyynskhtpLREKLLNKLKSARFRYLNEqlytskseeskdfftedRESFEAYHEGFKKQvtqwpinpvDIIIKSIQERESKGRLVIADLGCGEAKLAAELTQHKVHSLDLVALnervtscdmtrtplkpysVDVAVFCLSLMGTDLAACIKEANRILKLG
Flexible Loop (DISEMBL)
MKLDQPMGSETAhststsnsnvpnilatssgghkkekyynskhtplreKLLNKLKSARFRYLNeqlytskseeskdFFTEDRESFEAYHEGFkkqvtqwpinPVDIIIKSIQERESKGRLVIADLGCGEAKLAAELtqhkvhsldlvalnervtscdmtrtplkpySVDVAVFCLSLMGTDLAACIKEANRILKLG
Low Complexity Region (SEG)
MKLDQPMGSETAHSTSTSNSNVPNILATSSGGHKKEKYYNSKHTPLREKLLNKLKSARFRYLNEQLYTSKSEESKDFFTEDRESFEAYHEGFKKQVTQWPINPVDIIIKSIQERESKGRLVIADLGCGEAKLAAELTQHKVHSLDLVALNERVTSCDMTRTPLKPYSVDVAVFCLSLMGTDLAACIKEANRILKLG
Disordered region (IsUnstruct)
*****************************************************LKSARFRYLNEQLY*****************FEAYHEGFKKQVTQWPINPVDIIIKSIQERESKGRLVIADLGCGEAKLAAELTQHKVHSLDLVALNERVTSCDMTRTPLKPYSVDVAVFCLSLMGTDLAACIKEANRIL***
Disordered Region (DISOPRED)
**********************************************************FRYLNEQLYTSKSEESKDFFTEDRESFEAYHEGFKKQVTQWPINPVDIIIKSIQERESKGRLVIADLGCGEAKLAAELTQHKVHSLDLVALNERVTSCDMTRTPLKPYSVDVAVFCLSLMGTDLAACIKEANRILKLG
Disordered Region (DISEMBL)
********************NVPNILATSSGGHKKEKYYNSKHTPLREKLLNKLKSARFRYLNEQLYTSKSEESKDFFTEDRESFEAYHEGFKKQVTQWPINPVDIIIKSIQERESKGRLVIADLGCGEAKLAAELTQHKVHSLDLVALNERVTSCDMTRTPLKPYSVDVAVFCLSLMGTDLAACIKEANRILKLG
Disordered Region (DISPRO)
******************************************HTPLREKLLNKLKSARFRYLNEQLYTSKSEESKDFFTEDRESFEAYHEGFKKQVTQWPINPVDIIIKSIQERESKGRLVIADLGCGEAKLAAELTQHKVHSLDLVALNERVTSCDMTRTPLKPYSVDVAVFCLSLMGTDLAACIKEANRILKLG
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKLDQPMGSETAHSTSTSNSNVPNILATSSGGHKKEKYYNSKHTPLREKLLNKLKSARFRYLNEQLYTSKSEESKDFFTEDRESFEAYHEGFKKQVTQWPINPVDIIIKSIQERESKGRLVIADLGCGEAKLAAELTQHKVHSLDLVALNERVTSCDMTRTPLKPYSVDVAVFCLSLMGTDLAACIKEANRILKLG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	196	2.2.26 [Sep-21-2011]
Q54CP1	390	Ribosomal RNA-processing	yes	N/A	0.780	0.392	0.544	8e-43
Q10257	318	Ribosomal RNA-processing	yes	N/A	0.918	0.566	0.443	3e-41
Q9DB85	457	Ribosomal RNA-processing	yes	N/A	0.780	0.334	0.5	3e-41
Q5U4F0	457	Ribosomal RNA-processing	yes	N/A	0.755	0.323	0.516	4e-41
O43159	456	Ribosomal RNA-processing	yes	N/A	0.755	0.324	0.503	5e-41
A8XI07	332	Ribosomal RNA-processing	N/A	N/A	0.775	0.457	0.487	6e-37
O44410	343	Ribosomal RNA-processing	yes	N/A	0.724	0.413	0.482	2e-36
Q7K2B0	358	Ribosomal RNA-processing	yes	N/A	0.775	0.424	0.484	1e-34
P38961	392	Ribosomal RNA-processing	yes	N/A	0.806	0.403	0.409	1e-34
Q84JC0	287	Ribosomal RNA-processing	no	N/A	0.734	0.501	0.469	8e-34

>sp|Q54CP1|RRP8_DICDI Ribosomal RNA-processing protein 8 OS=Dictyostelium discoideum GN=rrp8 PE=3 SV=1

 Score =  173 bits (438), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 85/156 (54%), Positives = 110/156 (70%), Gaps = 3/156 (1%)

Query: 42  KHTPLREKLLNKLKSARFRYLNEQLYTSKSEESKDFFTEDRESFEAYHEGFKKQVTQWPI 101
           K T L+ ++  KLK +RFR+LNE LYT+ S+E+   F+EDR  F+ YH GFK QV  WPI
Sbjct: 154 KTTDLQNEMSEKLKGSRFRWLNETLYTTHSKEAFKEFSEDRSLFDQYHSGFKSQVESWPI 213

Query: 102 NPVDIIIKSIQERESKGRLVIADLGCGEAKLAAELT-QHKVHSLDLVALNERVTSCDMTR 160
           NP+D+II  +   + + R  IADLGCGEAKLA  L  +H + S DLVA+NERVT+CD++ 
Sbjct: 214 NPLDLIIDDLSSIKQRKR--IADLGCGEAKLAERLQHKHTIQSFDLVAVNERVTACDISN 271

Query: 161 TPLKPYSVDVAVFCLSLMGTDLAACIKEANRILKLG 196
            PLK  S+D+AVFCLSLMGT+    I EA R+L  G
Sbjct: 272 LPLKNESIDIAVFCLSLMGTNFIDFIIEAERVLVKG 307

Probable methyltransferase required to silence rDNA.
Dictyostelium discoideum (taxid: 44689)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|Q10257|RRP8_SCHPO Ribosomal RNA-processing protein 8 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rrp8 PE=3 SV=1

 Score =  168 bits (425), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 90/203 (44%), Positives = 130/203 (64%), Gaps = 23/203 (11%)

Query: 12  AHSTSTSNS---------NVPNILATSSGGHKKEKYYNSKHTPLREKLLNKLKSARFRYL 62
           A S +T+NS         +VP+I   + G  K     ++K T L++K+ +KL  A FR++
Sbjct: 51  AKSVTTNNSLKSEIKKEKSVPSIKEKNKGDAK-----HTKLTSLQQKMKDKLDGANFRWI 105

Query: 63  NEQLYTSKSEESKDFFTEDRESFEAYHEGFKKQVTQWPINPVDIIIKSIQER------ES 116
           NEQLYT++S+++   F E+ + F+ YH GF+ QV  WP NPVDI I+ ++ R      + 
Sbjct: 106 NEQLYTTESDKAVQMFKENPDLFDIYHAGFRYQVEGWPENPVDIFIQHLKIRFEHSNAKK 165

Query: 117 KGRLVIADLGCGEAKLAAELTQHK---VHSLDLVALNERVTSCDMTRTPLKPYSVDVAVF 173
           K  +VIADLGCGEAK+A+   + +   VHS DLVA NE V +CD+   P+   +VD+AVF
Sbjct: 166 KNNIVIADLGCGEAKIASTFRKSRSLQVHSFDLVAPNEHVVACDIANVPMADETVDIAVF 225

Query: 174 CLSLMGTDLAACIKEANRILKLG 196
           CLSLMGT+  + +KEA RILK+G
Sbjct: 226 CLSLMGTNWQSFLKEAYRILKVG 248

Probable methyltransferase involved in rRNA processing. Required for efficient pre-rRNA cleavage at site A2.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9DB85|RRP8_MOUSE Ribosomal RNA-processing protein 8 OS=Mus musculus GN=Rrp8 PE=1 SV=1

 Score =  168 bits (425), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 78/156 (50%), Positives = 109/156 (69%), Gaps = 3/156 (1%)

Query: 41  SKHTPLREKLLNKLKSARFRYLNEQLYTSKSEESKDFFTEDRESFEAYHEGFKKQVTQWP 100
           S+   LR ++  +L  ARFRYLNEQLY+  S  ++  F ED E+F  YH GF++QV +WP
Sbjct: 234 SRAGALRARMTQRLDGARFRYLNEQLYSGPSSAARRLFQEDPEAFLLYHRGFQRQVKKWP 293

Query: 101 INPVDIIIKSIQERESKGRLVIADLGCGEAKLAAELTQHKVHSLDLVALNERVTSCDMTR 160
           ++PVD I K +  R+    LV+AD GCG+ +LA+ + ++ VH  DL +L+ RVT CDM +
Sbjct: 294 LHPVDRIAKDL--RQKPASLVVADFGCGDCRLASSV-RNPVHCFDLASLDPRVTVCDMAQ 350

Query: 161 TPLKPYSVDVAVFCLSLMGTDLAACIKEANRILKLG 196
            PL+  SVDVAVFCLSLMGT++   ++EANR+LK G
Sbjct: 351 VPLEDESVDVAVFCLSLMGTNIRDFLEEANRVLKTG 386

Essential component of the eNoSC (energy-dependent nucleolar silencing) complex, a complex that mediates silencing of rDNA in response to intracellular energy status and acts by recruiting histone-modifying enzymes. The eNoSC complex is able to sense the energy status of cell: upon glucose starvation, elevation of NAD(+)/NADP(+) ratio activates SIRT1, leading to histone H3 deacetylation followed by dimethylation of H3 at 'Lys-9' (H3K9me2) by SUV39H1 and the formation of silent chromatin in the rDNA locus. In the complex, RRP8 binds to H3K9me2 and probably acts as a methyltransferase. Its substrates are however unknown.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q5U4F0|RRP8_RAT Ribosomal RNA-processing protein 8 OS=Rattus norvegicus GN=Rrp8 PE=2 SV=1

 Score =  167 bits (423), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 78/151 (51%), Positives = 107/151 (70%), Gaps = 3/151 (1%)

Query: 46  LREKLLNKLKSARFRYLNEQLYTSKSEESKDFFTEDRESFEAYHEGFKKQVTQWPINPVD 105
           LR ++  +L  ARFRYLNEQLY+  S  ++  F ED E+F  YH GF++QV +WP++PVD
Sbjct: 239 LRARMTQRLDGARFRYLNEQLYSGPSSAAQCLFQEDPEAFLLYHRGFQRQVKKWPLHPVD 298

Query: 106 IIIKSIQERESKGRLVIADLGCGEAKLAAELTQHKVHSLDLVALNERVTSCDMTRTPLKP 165
            I K +  R+    LV+AD GCG+ +LA+ + ++ VH  DL AL+ RVT CDM + PL+ 
Sbjct: 299 RIAKDL--RQKPASLVVADFGCGDCRLASSV-RNPVHCFDLAALDPRVTVCDMAQVPLED 355

Query: 166 YSVDVAVFCLSLMGTDLAACIKEANRILKLG 196
            SVDVAVFCLSLMGT++   ++EANR+LK G
Sbjct: 356 ESVDVAVFCLSLMGTNIRDFLEEANRVLKPG 386

Essential component of the eNoSC (energy-dependent nucleolar silencing) complex, a complex that mediates silencing of rDNA in response to intracellular energy status and acts by recruiting histone-modifying enzymes. The eNoSC complex is able to sense the energy status of cell: upon glucose starvation, elevation of NAD(+)/NADP(+) ratio activates SIRT1, leading to histone H3 deacetylation followed by dimethylation of H3 at 'Lys-9' (H3K9me2) by SUV39H1 and the formation of silent chromatin in the rDNA locus. In the complex, RRP8 binds to H3K9me2 and probably acts as a methyltransferase. Its substrates are however unknown.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|O43159|RRP8_HUMAN Ribosomal RNA-processing protein 8 OS=Homo sapiens GN=RRP8 PE=1 SV=2

 Score =  167 bits (422), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 76/151 (50%), Positives = 107/151 (70%), Gaps = 3/151 (1%)

Query: 46  LREKLLNKLKSARFRYLNEQLYTSKSEESKDFFTEDRESFEAYHEGFKKQVTQWPINPVD 105
           LR ++  +L  ARFRYLNEQLY+  S  ++  F ED E+F  YH GF+ QV +WP+ PVD
Sbjct: 238 LRARMAQRLDGARFRYLNEQLYSGPSSAAQRLFQEDPEAFLLYHRGFQSQVKKWPLQPVD 297

Query: 106 IIIKSIQERESKGRLVIADLGCGEAKLAAELTQHKVHSLDLVALNERVTSCDMTRTPLKP 165
            I + +++R +   LV+AD GCG+ +LA+ + ++ VH  DL +L+ RVT CDM + PL+ 
Sbjct: 298 RIARDLRQRPAS--LVVADFGCGDCRLASSI-RNPVHCFDLASLDPRVTVCDMAQVPLED 354

Query: 166 YSVDVAVFCLSLMGTDLAACIKEANRILKLG 196
            SVDVAVFCLSLMGT++   ++EANR+LK G
Sbjct: 355 ESVDVAVFCLSLMGTNIRDFLEEANRVLKPG 385

Essential component of the eNoSC (energy-dependent nucleolar silencing) complex, a complex that mediates silencing of rDNA in response to intracellular energy status and acts by recruiting histone-modifying enzymes. The eNoSC complex is able to sense the energy status of cell: upon glucose starvation, elevation of NAD(+)/NADP(+) ratio activates SIRT1, leading to histone H3 deacetylation followed by dimethylation of H3 at 'Lys-9' (H3K9me2) by SUV39H1 and the formation of silent chromatin in the rDNA locus. In the complex, RRP8 binds to H3K9me2 and probably acts as a methyltransferase. Its substrates are however unknown.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|A8XI07|RRP8_CAEBR Ribosomal RNA-processing protein 8 OS=Caenorhabditis briggsae GN=CBG13492 PE=3 SV=1

 Score =  153 bits (387), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 76/156 (48%), Positives = 103/156 (66%), Gaps = 4/156 (2%)

Query: 42  KHTPLREKLLNKLKSARFRYLNEQLYTSKSEESKDFFTEDRESFEAYHEGFKKQVTQWPI 101
           K  P+ E    +L + RFR LNE+LYT    E+ DFF EDR +F+ YH GF  QV +WP 
Sbjct: 112 KENPIAE-AKKRLDAGRFRMLNEKLYTCTGSEAFDFFKEDRTAFDLYHRGFADQVKKWPN 170

Query: 102 NPVDIIIKSIQERESKGRLVIADLGCGEAKLAAELTQ-HKVHSLDLVALNERVTSCDMTR 160
           +P+  II+ +Q +  K    + DLGCGEAK+A  + + H + S DLVA+N+RV SCDM++
Sbjct: 171 HPLREIIRWLQAKPDKQ--AVFDLGCGEAKIAEAVGEKHTIRSFDLVAVNDRVESCDMSK 228

Query: 161 TPLKPYSVDVAVFCLSLMGTDLAACIKEANRILKLG 196
            P +  S DV +FCLSLMGT+L   IKEA R+L+ G
Sbjct: 229 LPAEDGSADVVIFCLSLMGTNLYDFIKEARRVLRTG 264

Probable methyltransferase required to silence rDNA.

Caenorhabditis briggsae (taxid: 6238)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|O44410|RRP8_CAEEL Ribosomal RNA-processing protein 8 OS=Caenorhabditis elegans GN=T07A9.8 PE=3 SV=1

 Score =  152 bits (383), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 70/145 (48%), Positives = 102/145 (70%), Gaps = 3/145 (2%)

Query: 53  KLKSARFRYLNEQLYTSKSEESKDFFTEDRESFEAYHEGFKKQVTQWPINPVDIIIKSIQ 112
           +L + RFR+LNE+LYT    E+ DFF ED  +F+ YH+GF  QV +WP +P+  II+ +Q
Sbjct: 133 RLDAGRFRFLNEKLYTCTGSEAFDFFKEDPTAFDLYHKGFADQVKKWPNHPLREIIRWLQ 192

Query: 113 ERESKGRLVIADLGCGEAKLAAELTQ-HKVHSLDLVALNERVTSCDMTRTPLKPYSVDVA 171
            +  +  +   DLGCGEAK+A  + + HK+ S DLVA+N+RV SCDM++ P +  S D+ 
Sbjct: 193 SKPDQQSVF--DLGCGEAKIAEAVGEKHKIRSFDLVAVNDRVESCDMSKLPAEDSSADIV 250

Query: 172 VFCLSLMGTDLAACIKEANRILKLG 196
           ++CLSLMGT+L   I+EA R+LK+G
Sbjct: 251 IYCLSLMGTNLYDFIREARRVLKIG 275

Probable methyltransferase required to silence rDNA.

Caenorhabditis elegans (taxid: 6239)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q7K2B0|RRP8_DROME Ribosomal RNA-processing protein 8 OS=Drosophila melanogaster GN=CG7137 PE=1 SV=1

 Score =  146 bits (368), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 77/159 (48%), Positives = 110/159 (69%), Gaps = 7/159 (4%)

Query: 41  SKHTPLREKLLNKLKS----ARFRYLNEQLYTSKSEESKDFFTEDRESFEAYHEGFKKQV 96
           S  TP    L +KL+S     RFRY+NEQLY++ S +++  F +D  +FEAYH G+++QV
Sbjct: 133 SSTTPAANSLASKLQSELLGGRFRYINEQLYSTTSRKAEALFRKDSSAFEAYHAGYRQQV 192

Query: 97  TQWPINPVDIIIKSIQERESKGRLVIADLGCGEAKLAAELTQHKVHSLDLVALNERVTSC 156
            +WPINP++ IIK+I++       +I D GCGE KLA  +  +KV+S+DLVA    + +C
Sbjct: 193 EKWPINPLNRIIKTIKKIPKTA--IIGDFGCGEGKLAQSVP-NKVYSMDLVAARSDIIAC 249

Query: 157 DMTRTPLKPYSVDVAVFCLSLMGTDLAACIKEANRILKL 195
           ++T TPL+  ++DVAV+CLSLMGTDL     EANR+LKL
Sbjct: 250 NITDTPLQARTLDVAVYCLSLMGTDLNEFFLEANRVLKL 288

Probable methyltransferase required to silence rDNA.

Drosophila melanogaster (taxid: 7227)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|P38961|RRP8_YEAST Ribosomal RNA-processing protein 8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RRP8 PE=1 SV=2

 Score =  145 bits (367), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 77/188 (40%), Positives = 105/188 (55%), Gaps = 30/188 (15%)

Query: 36  EKYYNSKHTPLREKLLNKLKSARFRYLNEQLYTSKSEESKDFFTEDRESFEAYHEGFKKQ 95
           EK    + TPL++K++ KL  +RFR++NEQLYT  S+E+     E  + F+ YH+GF+ Q
Sbjct: 103 EKPTKKQLTPLQQKMMAKLTGSRFRWINEQLYTISSDEALKLIKEQPQLFDEYHDGFRSQ 162

Query: 96  VTQWPINPVDIIIKSIQER--------------ESKGRLVIADLGCGEAKLAAELT---- 137
           V  WP NPVD+ +  I+ R              +    +VIAD+GCGEA+LA E+     
Sbjct: 163 VQAWPENPVDVFVDQIRYRCMKPVNAPGGLPGLKDSKEIVIADMGCGEAQLALEINNFFK 222

Query: 138 ------------QHKVHSLDLVALNERVTSCDMTRTPLKPYSVDVAVFCLSLMGTDLAAC 185
                       +HKVHS DL   NER+T  D+   PL   S  + VFCL+LMGT+    
Sbjct: 223 NYNKKAKKYLKRRHKVHSFDLKKANERITVADIRNVPLPDESCTIVVFCLALMGTNFLDF 282

Query: 186 IKEANRIL 193
           IKEA RIL
Sbjct: 283 IKEAYRIL 290

Probable methyltransferase involved in rRNA processing. Required for efficient pre-rRNA cleavage at site A2. Also involved in telomere length regulation and maintenance.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q84JC0|RRP8_ARATH Ribosomal RNA-processing protein 8 OS=Arabidopsis thaliana GN=At5g40530 PE=2 SV=1

 Score =  143 bits (360), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 69/147 (46%), Positives = 102/147 (69%), Gaps = 3/147 (2%)

Query: 48  EKLLNKLKSARFRYLNEQLYTSKSEESKDFFTEDRESFEAYHEGFKKQVTQWPINPVDII 107
           + L  +L   +FR LNE+LYT   +E+ D+F ED + F+ YH G+++Q++ WP  PV+ I
Sbjct: 66  DALRERLSGGQFRMLNEKLYTCSGKEALDYFKEDPQMFDMYHTGYQQQMSNWPELPVNSI 125

Query: 108 IKSIQERESKGRLVIADLGCGEAKLAAELTQHKVHSLDLVALNERVTSCDMTRTPLKPYS 167
           I  +    S   LV+AD GCG+A++A  + ++KV S DLV+ N  V +CDM+ T L+  S
Sbjct: 126 INWLLSNSSS--LVVADFGCGDARIAKSV-KNKVFSFDLVSKNPSVIACDMSNTSLESSS 182

Query: 168 VDVAVFCLSLMGTDLAACIKEANRILK 194
           VDVAVFCLSLMGT+ ++ IKEA+R+L+
Sbjct: 183 VDVAVFCLSLMGTNYSSYIKEAHRVLR 209

Probable methyltransferase required to silence rDNA.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	196
405964028	689	Ribosomal RNA-processing protein 8 [Cras	0.780	0.222	0.576	2e-47
346464725	529	hypothetical protein [Amblyomma maculatu	0.811	0.300	0.556	5e-47
427784337	495	Putative rna methylase involved in rrna	0.877	0.347	0.511	1e-45
270001380	389	hypothetical protein TcasGA2_TC000195 [T	0.755	0.380	0.562	3e-45
350417153	444	PREDICTED: hypothetical protein LOC10074	0.785	0.346	0.554	4e-45
156554950	354	PREDICTED: ribosomal RNA-processing prot	0.739	0.409	0.587	6e-45
189234953	243	PREDICTED: similar to AGAP011327-PA [Tri	0.755	0.609	0.562	8e-45
158287240	356	AGAP011327-PA [Anopheles gambiae str. PE	0.964	0.530	0.502	3e-44
340729230	223	PREDICTED: ribosomal RNA-processing prot	0.755	0.663	0.569	4e-44
383859941	214	PREDICTED: ribosomal RNA-processing prot	0.724	0.663	0.579	7e-44

>gi|405964028|gb|EKC29551.1| Ribosomal RNA-processing protein 8 [Crassostrea gigas]

 Score =  194 bits (493), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 90/156 (57%), Positives = 116/156 (74%), Gaps = 3/156 (1%)

Query: 41  SKHTPLREKLLNKLKSARFRYLNEQLYTSKSEESKDFFTEDRESFEAYHEGFKKQVTQWP 100
           SK   L+E+L+ +L SARFRY+NEQLYT   +E+++ F ED E+F+ YH+GF+ QV +WP
Sbjct: 470 SKSLSLKERLMEQLNSARFRYINEQLYTQTGQEAQEMFEEDEEAFQVYHQGFQTQVNKWP 529

Query: 101 INPVDIIIKSIQERESKGRLVIADLGCGEAKLAAELTQHKVHSLDLVALNERVTSCDMTR 160
            NPVD+ IK IQ  +  G  V+AD GCG+AK+A  +  HKVHS DLVALN+ VT+CDM  
Sbjct: 530 ANPVDLFIKDIQ--QFPGNKVVADFGCGDAKIARNVP-HKVHSFDLVALNDHVTACDMAH 586

Query: 161 TPLKPYSVDVAVFCLSLMGTDLAACIKEANRILKLG 196
            PL   SVDVAVFCLSLMGT+LA  + EA+R+LK G
Sbjct: 587 VPLGAGSVDVAVFCLSLMGTNLADYLTEAHRVLKTG 622

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|346464725|gb|AEO32207.1| hypothetical protein [Amblyomma maculatum]

 Score =  192 bits (489), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 94/169 (55%), Positives = 122/169 (72%), Gaps = 10/169 (5%)

Query: 36  EKYYNSKHTPL--------REKLLNKLKSARFRYLNEQLYTSKSEESKDFFTEDRESFEA 87
           +K  N +  PL        RE+ L ++++A+FR LNE+LYT+ S+E+   F  D +SFE 
Sbjct: 282 KKSANQRRRPLTLASSADVRERALARIRAAQFRMLNEELYTTASDEAVQSFESDPKSFEV 341

Query: 88  YHEGFKKQVTQWPINPVDIIIKSIQERESKGRLVIADLGCGEAKLAAELTQHKVHSLDLV 147
           YHEGF++QV +WP+NPVD+II ++  R      VIADLGCGEAK+A ELT++KVHS DLV
Sbjct: 342 YHEGFEQQVAKWPVNPVDVIIDTL--RSMPKSTVIADLGCGEAKIAQELTKNKVHSFDLV 399

Query: 148 ALNERVTSCDMTRTPLKPYSVDVAVFCLSLMGTDLAACIKEANRILKLG 196
           ALNE VT CDM++ PL   +VDVAVFCLSLMGT+L   + EANRILK G
Sbjct: 400 ALNEHVTVCDMSKVPLPNQAVDVAVFCLSLMGTNLNTFVLEANRILKKG 448

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427784337|gb|JAA57620.1| Putative rna methylase involved in rrna processing [Rhipicephalus pulchellus]

 Score =  187 bits (476), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 89/174 (51%), Positives = 125/174 (71%), Gaps = 2/174 (1%)

Query: 23  PNILATSSGGHKKEKYYNSKHTPLREKLLNKLKSARFRYLNEQLYTSKSEESKDFFTEDR 82
           P +    +   K+  +  +    +RE  L+++++A+FR LNE+LYT+ S+++   F  D 
Sbjct: 255 PCLTIGKAKSKKRRAFSLASSADVREWALSRIRAAQFRMLNEELYTTASDDAVQSFESDP 314

Query: 83  ESFEAYHEGFKKQVTQWPINPVDIIIKSIQERESKGRLVIADLGCGEAKLAAELTQHKVH 142
           +SF+ YHEGF++QV++WP+NPVD+II S+  R      VIADLGCGEAK+A ELT++KVH
Sbjct: 315 QSFQVYHEGFEQQVSKWPVNPVDVIIDSL--RGMPKSTVIADLGCGEAKIARELTRNKVH 372

Query: 143 SLDLVALNERVTSCDMTRTPLKPYSVDVAVFCLSLMGTDLAACIKEANRILKLG 196
           S D+VALN+ VT CDM++ PL   +VDVAVFCLSLMGT+L   + EANRILK G
Sbjct: 373 SFDIVALNDHVTVCDMSKLPLPSQTVDVAVFCLSLMGTNLNMFVLEANRILKKG 426

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270001380|gb|EEZ97827.1| hypothetical protein TcasGA2_TC000195 [Tribolium castaneum]

 Score =  186 bits (473), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 85/151 (56%), Positives = 118/151 (78%), Gaps = 3/151 (1%)

Query: 46  LREKLLNKLKSARFRYLNEQLYTSKSEESKDFFTEDRESFEAYHEGFKKQVTQWPINPVD 105
           LRE+++ KL++ARFRY+NEQ+Y++ S+E++  F ED ++F+AYHEG+++QV +WP+NP+D
Sbjct: 173 LRERMMEKLQAARFRYINEQIYSNDSKEAQKIFKEDPDAFKAYHEGYRQQVAKWPLNPLD 232

Query: 106 IIIKSIQERESKGRLVIADLGCGEAKLAAELTQHKVHSLDLVALNERVTSCDMTRTPLKP 165
           +IIKS+++       V+AD GCG+AKLA  + Q KVHS DLVA NE VT+CDM   PL+ 
Sbjct: 233 VIIKSVKKMPKTH--VVADFGCGDAKLAQSIKQ-KVHSFDLVATNEAVTACDMAHVPLEN 289

Query: 166 YSVDVAVFCLSLMGTDLAACIKEANRILKLG 196
            SVDV VFCLSLMGT+L   + EANR+L LG
Sbjct: 290 NSVDVVVFCLSLMGTNLHDYLLEANRVLVLG 320

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350417153|ref|XP_003491282.1| PREDICTED: hypothetical protein LOC100747414 [Bombus impatiens]

 Score =  186 bits (472), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 87/157 (55%), Positives = 117/157 (74%), Gaps = 3/157 (1%)

Query: 40  NSKHTPLREKLLNKLKSARFRYLNEQLYTSKSEESKDFFTEDRESFEAYHEGFKKQVTQW 99
           N K   LR++++ KLK++RFRYLNE LY ++S ESK +F  D ++F+AYHEG+K+QV QW
Sbjct: 221 NIKPQSLRQRMMTKLKASRFRYLNETLYNNESSESKKYFKSDPDAFKAYHEGYKQQVDQW 280

Query: 100 PINPVDIIIKSIQERESKGRLVIADLGCGEAKLAAELTQHKVHSLDLVALNERVTSCDMT 159
           P+NP+DI+I SI++   +   ++AD GCGEA+LA  +  HKVHS D V+LNE VT+CD+ 
Sbjct: 281 PVNPLDIVIASIKKMPKE--YIVADFGCGEARLAT-VVPHKVHSFDFVSLNENVTACDVA 337

Query: 160 RTPLKPYSVDVAVFCLSLMGTDLAACIKEANRILKLG 196
            T L   SV+V VFCLSLMGT+L   I EANR+LK G
Sbjct: 338 HTNLLTSSVNVVVFCLSLMGTNLKDYIVEANRVLKKG 374

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156554950|ref|XP_001602092.1| PREDICTED: ribosomal RNA-processing protein 8-like [Nasonia vitripennis]

 Score =  185 bits (470), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 87/148 (58%), Positives = 116/148 (78%), Gaps = 3/148 (2%)

Query: 46  LREKLLNKLKSARFRYLNEQLYTSKSEESKDFFTEDRESFEAYHEGFKKQVTQWPINPVD 105
           LRE+++ KLK++RFRYLNEQLY S+S +SK +F ED ++F AYHEG+K+QV +WP+NP+D
Sbjct: 136 LRERMMAKLKASRFRYLNEQLYNSESSQSKKYFEEDPDAFYAYHEGYKQQVDRWPMNPLD 195

Query: 106 IIIKSIQERESKGRLVIADLGCGEAKLAAELTQHKVHSLDLVALNERVTSCDMTRTPLKP 165
           +II+SI++   +   VIAD GCGEAKLA  + Q  VHS DLVA+N++V +CDM  TPL  
Sbjct: 196 VIIESIKKMPKEH--VIADFGCGEAKLADSVPQT-VHSFDLVAVNDKVKACDMANTPLLT 252

Query: 166 YSVDVAVFCLSLMGTDLAACIKEANRIL 193
             V+VAVFCLSLMGT+L   + EANR+L
Sbjct: 253 GRVNVAVFCLSLMGTNLGDYLLEANRVL 280

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189234953|ref|XP_973099.2| PREDICTED: similar to AGAP011327-PA [Tribolium castaneum]

 Score =  185 bits (470), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 85/151 (56%), Positives = 118/151 (78%), Gaps = 3/151 (1%)

Query: 46  LREKLLNKLKSARFRYLNEQLYTSKSEESKDFFTEDRESFEAYHEGFKKQVTQWPINPVD 105
           LRE+++ KL++ARFRY+NEQ+Y++ S+E++  F ED ++F+AYHEG+++QV +WP+NP+D
Sbjct: 27  LRERMMEKLQAARFRYINEQIYSNDSKEAQKIFKEDPDAFKAYHEGYRQQVAKWPLNPLD 86

Query: 106 IIIKSIQERESKGRLVIADLGCGEAKLAAELTQHKVHSLDLVALNERVTSCDMTRTPLKP 165
           +IIKS+++       V+AD GCG+AKLA  + Q KVHS DLVA NE VT+CDM   PL+ 
Sbjct: 87  VIIKSVKKMPKTH--VVADFGCGDAKLAQSIKQ-KVHSFDLVATNEAVTACDMAHVPLEN 143

Query: 166 YSVDVAVFCLSLMGTDLAACIKEANRILKLG 196
            SVDV VFCLSLMGT+L   + EANR+L LG
Sbjct: 144 NSVDVVVFCLSLMGTNLHDYLLEANRVLVLG 174

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158287240|ref|XP_309322.3| AGAP011327-PA [Anopheles gambiae str. PEST] gi|157019556|gb|EAA05263.3| AGAP011327-PA [Anopheles gambiae str. PEST]

 Score =  183 bits (465), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 98/195 (50%), Positives = 132/195 (67%), Gaps = 6/195 (3%)

Query: 5   QPMGSETAHSTSTSNSNV-PNILATSSGGHKKEKYYNSKHTP--LREKLLNKLKSARFRY 61
           +P  + T + T   + N  P+    S+G  KK+K  N+K  P  LREKL+  LK +RFR+
Sbjct: 95  KPNETVTVNGTKKQSENSSPSEHPKSNGSEKKDKTTNAKVKPVSLREKLVESLKGSRFRF 154

Query: 62  LNEQLYTSKSEESKDFFTEDRESFEAYHEGFKKQVTQWPINPVDIIIKSIQERESKGRLV 121
           +NEQLY    +E+K  F ED  SFEAYH+G+++QV QWP+NP+D +IKSI +       +
Sbjct: 155 INEQLYKIPGQEAKKMFQEDPASFEAYHDGYRQQVEQWPMNPLDRMIKSILKMPKD--TI 212

Query: 122 IADLGCGEAKLAAELTQHKVHSLDLVALNERVTSCDMTRTPLKPYSVDVAVFCLSLMGTD 181
           IAD GCGEAKLAA +  +KV+SLDLVA +  V +CDM  TPL+   V+V VFCLSLMGT+
Sbjct: 213 IADFGCGEAKLAASVP-NKVYSLDLVANHNGVIACDMANTPLESNFVNVVVFCLSLMGTN 271

Query: 182 LAACIKEANRILKLG 196
           L   + EANR+LK+G
Sbjct: 272 LVDFLLEANRVLKVG 286

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340729230|ref|XP_003402909.1| PREDICTED: ribosomal RNA-processing protein 8-like [Bombus terrestris]

 Score =  183 bits (464), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 86/151 (56%), Positives = 116/151 (76%), Gaps = 3/151 (1%)

Query: 46  LREKLLNKLKSARFRYLNEQLYTSKSEESKDFFTEDRESFEAYHEGFKKQVTQWPINPVD 105
           LR++++ KLK++RFRYLNE LY ++S ESK +F  D ++F+AYHEG+K+QV QWPINP+D
Sbjct: 6   LRQRMMTKLKASRFRYLNETLYNNESSESKKYFKNDPDAFKAYHEGYKQQVDQWPINPLD 65

Query: 106 IIIKSIQERESKGRLVIADLGCGEAKLAAELTQHKVHSLDLVALNERVTSCDMTRTPLKP 165
           I+I SI++   +   ++AD GCGEA+LA  +  HKVHS D V+LN+ VT+CD+T T L  
Sbjct: 66  IVIASIKKMPKE--YIVADFGCGEARLAT-VVPHKVHSFDFVSLNKNVTACDITHTNLLT 122

Query: 166 YSVDVAVFCLSLMGTDLAACIKEANRILKLG 196
            SV+V VFCLSLMGT+L   I EANR+LK G
Sbjct: 123 SSVNVVVFCLSLMGTNLKDYIIEANRVLKKG 153

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383859941|ref|XP_003705450.1| PREDICTED: ribosomal RNA-processing protein 8-like [Megachile rotundata]

 Score =  182 bits (461), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 84/145 (57%), Positives = 110/145 (75%), Gaps = 3/145 (2%)

Query: 50  LLNKLKSARFRYLNEQLYTSKSEESKDFFTEDRESFEAYHEGFKKQVTQWPINPVDIIIK 109
           ++ KL+++RFRY+NE LY+S+S ES ++F  D +SF+AYHEG+K+QV QWP+NP+D+I+ 
Sbjct: 1   MMTKLRASRFRYINESLYSSESTESNNYFQNDPDSFKAYHEGYKQQVEQWPVNPLDVIVS 60

Query: 110 SIQERESKGRLVIADLGCGEAKLAAELTQHKVHSLDLVALNERVTSCDMTRTPLKPYSVD 169
           SI++       +IAD GCGEAKLAA +  HKVHS D V+LNE VT+CDM  TPL    V 
Sbjct: 61  SIKKMSKSN--IIADFGCGEAKLAASVP-HKVHSFDFVSLNENVTACDMAHTPLLTNGVH 117

Query: 170 VAVFCLSLMGTDLAACIKEANRILK 194
           V VFCLSLMGT+L   I EANR+LK
Sbjct: 118 VVVFCLSLMGTNLKDYIIEANRVLK 142

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	196
DICTYBASE|DDB_G0292960	390	DDB_G0292960 "Ribosomal RNA-pr	0.887	0.446	0.516	3.3e-40
RGD|1308302	457	Rrp8 "ribosomal RNA processing	0.755	0.323	0.509	4.6e-40
POMBASE|SPAC56F8.09	318	rrp8 "rRNA methyltransferase R	0.989	0.610	0.447	2.6e-38
MGI|MGI:1914251	457	Rrp8 "ribosomal RNA processing	0.811	0.347	0.481	1.5e-37
UNIPROTKB|I3LPL4	459	RRP8 "Uncharacterized protein"	0.913	0.389	0.445	4.9e-37
UNIPROTKB|E1BJI1	457	RRP8 "Uncharacterized protein"	0.790	0.339	0.474	8e-37
UNIPROTKB|O43159	456	RRP8 "Ribosomal RNA-processing	0.755	0.324	0.503	8e-37
UNIPROTKB|E2QUX8	664	RRP8 "Uncharacterized protein"	0.755	0.222	0.503	2.4e-36
ZFIN|ZDB-GENE-030131-8898	533	wu:fk33d07 "wu:fk33d07" [Danio	0.979	0.360	0.415	9.2e-36
FB|FBgn0034422	358	CG7137 [Drosophila melanogaste	0.775	0.424	0.484	6.5e-35

DICTYBASE|DDB_G0292960 DDB_G0292960 "Ribosomal RNA-processing protein 8" [Dictyostelium discoideum (taxid:44689)]

 Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
 Identities = 92/178 (51%), Positives = 118/178 (66%)

Query:    21 NVPNILATSSGGHKKEKYYNS-KHTPLREKLLNKLKSARFRYLNEQLYTSKSEESKDFFT 79
             N+ N   TSS      K   S K T L+ ++  KLK +RFR+LNE LYT+ S+E+   F+
Sbjct:   132 NLWNPKPTSSVSVSSSKSSKSLKTTDLQNEMSEKLKGSRFRWLNETLYTTHSKEAFKEFS 191

Query:    80 EDRESFEAYHEGFKKQVTQWPINPVDIIIKSIQERESKGRLVIADLGCGEAKLAAELT-Q 138
             EDR  F+ YH GFK QV  WPINP+D+II  +   + + R  IADLGCGEAKLA  L  +
Sbjct:   192 EDRSLFDQYHSGFKSQVESWPINPLDLIIDDLSSIKQRKR--IADLGCGEAKLAERLQHK 249

Query:   139 HKVHSLDLVALNERVTSCDMTRTPLKPYSVDVAVFCLSLMGTDLAACIKEANRILKLG 196
             H + S DLVA+NERVT+CD++  PLK  S+D+AVFCLSLMGT+    I EA R+L  G
Sbjct:   250 HTIQSFDLVAVNERVTACDISNLPLKNESIDIAVFCLSLMGTNFIDFIIEAERVLVKG 307

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0035064 "methylated histone residue binding" evidence=ISS

GO:0033553 "rDNA heterochromatin" evidence=ISS

GO:0005730 "nucleolus" evidence=IEA;ISS

GO:0005677 "chromatin silencing complex" evidence=ISS

GO:0000183 "chromatin silencing at rDNA" evidence=ISS

GO:0032259 "methylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

RGD|1308302 Rrp8 "ribosomal RNA processing 8, methyltransferase, homolog (yeast)" [Rattus norvegicus (taxid:10116)]

 Score = 400 (145.9 bits), Expect = 4.6e-40, Sum P(2) = 4.6e-40
 Identities = 77/151 (50%), Positives = 109/151 (72%)

Query:    46 LREKLLNKLKSARFRYLNEQLYTSKSEESKDFFTEDRESFEAYHEGFKKQVTQWPINPVD 105
             LR ++  +L  ARFRYLNEQLY+  S  ++  F ED E+F  YH GF++QV +WP++PVD
Sbjct:   239 LRARMTQRLDGARFRYLNEQLYSGPSSAAQCLFQEDPEAFLLYHRGFQRQVKKWPLHPVD 298

Query:   106 IIIKSIQERESKGRLVIADLGCGEAKLAAELTQHKVHSLDLVALNERVTSCDMTRTPLKP 165
              I K ++++ +   LV+AD GCG+ +LA+ + ++ VH  DL AL+ RVT CDM + PL+ 
Sbjct:   299 RIAKDLRQKPAS--LVVADFGCGDCRLASSV-RNPVHCFDLAALDPRVTVCDMAQVPLED 355

Query:   166 YSVDVAVFCLSLMGTDLAACIKEANRILKLG 196
              SVDVAVFCLSLMGT++   ++EANR+LK G
Sbjct:   356 ESVDVAVFCLSLMGTNIRDFLEEANRVLKPG 386

GO:0000183 "chromatin silencing at rDNA" evidence=ISO;ISS

GO:0005634 "nucleus" evidence=ISO

GO:0005677 "chromatin silencing complex" evidence=ISO;ISS

GO:0005730 "nucleolus" evidence=ISO;ISS

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0033553 "rDNA heterochromatin" evidence=ISO;ISS

GO:0035064 "methylated histone residue binding" evidence=ISO;ISS

GO:0042149 "cellular response to glucose starvation" evidence=IEA;ISO

GO:0046015 "regulation of transcription by glucose" evidence=IEA;ISO

GO:0071158 "positive regulation of cell cycle arrest" evidence=IEA;ISO

GO:0072332 "intrinsic apoptotic signaling pathway by p53 class mediator" evidence=IEA;ISO

POMBASE|SPAC56F8.09 rrp8 "rRNA methyltransferase Rrp8 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
 Identities = 93/208 (44%), Positives = 134/208 (64%)

Query:     2 KLDQPMGSETAHSTSTSNSNVPNILATSSGGHKKEKYY-NSKHTPL---REKLLNKLKSA 57
             KL++ +  + A S +T+NS    I    S    KEK   ++KHT L   ++K+ +KL  A
Sbjct:    42 KLNEKV-LKKAKSVTTNNSLKSEIKKEKSVPSIKEKNKGDAKHTKLTSLQQKMKDKLDGA 100

Query:    58 RFRYLNEQLYTSKSEESKDFFTEDRESFEAYHEGFKKQVTQWPINPVDIIIKSIQER--- 114
              FR++NEQLYT++S+++   F E+ + F+ YH GF+ QV  WP NPVDI I+ ++ R   
Sbjct:   101 NFRWINEQLYTTESDKAVQMFKENPDLFDIYHAGFRYQVEGWPENPVDIFIQHLKIRFEH 160

Query:   115 ---ESKGRLVIADLGCGEAKLAAELTQHK---VHSLDLVALNERVTSCDMTRTPLKPYSV 168
                + K  +VIADLGCGEAK+A+   + +   VHS DLVA NE V +CD+   P+   +V
Sbjct:   161 SNAKKKNNIVIADLGCGEAKIASTFRKSRSLQVHSFDLVAPNEHVVACDIANVPMADETV 220

Query:   169 DVAVFCLSLMGTDLAACIKEANRILKLG 196
             D+AVFCLSLMGT+  + +KEA RILK+G
Sbjct:   221 DIAVFCLSLMGTNWQSFLKEAYRILKVG 248

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=ISO;IDA

GO:0006364 "rRNA processing" evidence=ISO

GO:0008168 "methyltransferase activity" evidence=ISO

MGI|MGI:1914251 Rrp8 "ribosomal RNA processing 8, methyltransferase, homolog (yeast)" [Mus musculus (taxid:10090)]

 Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
 Identities = 78/162 (48%), Positives = 112/162 (69%)

Query:    35 KEKYYNSKHTPLREKLLNKLKSARFRYLNEQLYTSKSEESKDFFTEDRESFEAYHEGFKK 94
             K     S+   LR ++  +L  ARFRYLNEQLY+  S  ++  F ED E+F  YH GF++
Sbjct:   228 KSDSQESRAGALRARMTQRLDGARFRYLNEQLYSGPSSAARRLFQEDPEAFLLYHRGFQR 287

Query:    95 QVTQWPINPVDIIIKSIQERESKGRLVIADLGCGEAKLAAELTQHKVHSLDLVALNERVT 154
             QV +WP++PVD I K ++++ +   LV+AD GCG+ +LA+ + ++ VH  DL +L+ RVT
Sbjct:   288 QVKKWPLHPVDRIAKDLRQKPAS--LVVADFGCGDCRLASSV-RNPVHCFDLASLDPRVT 344

Query:   155 SCDMTRTPLKPYSVDVAVFCLSLMGTDLAACIKEANRILKLG 196
              CDM + PL+  SVDVAVFCLSLMGT++   ++EANR+LK G
Sbjct:   345 VCDMAQVPLEDESVDVAVFCLSLMGTNIRDFLEEANRVLKTG 386

GO:0000183 "chromatin silencing at rDNA" evidence=ISO

GO:0005634 "nucleus" evidence=IEA

GO:0005677 "chromatin silencing complex" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0033553 "rDNA heterochromatin" evidence=ISO

GO:0035064 "methylated histone residue binding" evidence=ISO

GO:0042149 "cellular response to glucose starvation" evidence=ISO

GO:0046015 "regulation of transcription by glucose" evidence=ISO

GO:0071158 "positive regulation of cell cycle arrest" evidence=ISO

GO:0072332 "intrinsic apoptotic signaling pathway by p53 class mediator" evidence=ISO

UNIPROTKB|I3LPL4 RRP8 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
 Identities = 86/193 (44%), Positives = 121/193 (62%)

Query:     4 DQPMGSETAHSTSTSNSNVPNILATSSGGHKKEKYYNSKHTPLREKLLNKLKSARFRYLN 63
             DQP+  E A +  T  + VP        G + E         LR ++  +L  ARFRYLN
Sbjct:   210 DQPL--EPAPAP-TQETEVPPAAGPDGPGARAEA--------LRARMAQRLDGARFRYLN 258

Query:    64 EQLYTSKSEESKDFFTEDRESFEAYHEGFKKQVTQWPINPVDIIIKSIQERESKGRLVIA 123
             EQLY+  S  ++  F ED E+F  YH GF+ QV +WP+ PVD I + +++R +   LV+A
Sbjct:   259 EQLYSQPSHAAQRLFQEDPEAFLLYHRGFQSQVRKWPLQPVDRIARDLRQRPAS--LVVA 316

Query:   124 DLGCGEAKLAAELTQHKVHSLDLVALNERVTSCDMTRTPLKPYSVDVAVFCLSLMGTDLA 183
             D GCG+ +LA+ + ++ VH  DL +L+ RVT CDM + PL+  SVDVAVFCLSLMGT++ 
Sbjct:   317 DFGCGDCRLASSI-RNPVHCFDLASLDPRVTVCDMAQVPLEDASVDVAVFCLSLMGTNIR 375

Query:   184 ACIKEANRILKLG 196
               ++EANR+LK G
Sbjct:   376 DFLEEANRVLKPG 388

GO:0072332 "intrinsic apoptotic signaling pathway by p53 class mediator" evidence=IEA

GO:0071158 "positive regulation of cell cycle arrest" evidence=IEA

GO:0046015 "regulation of transcription by glucose" evidence=IEA

GO:0042149 "cellular response to glucose starvation" evidence=IEA

GO:0035064 "methylated histone residue binding" evidence=IEA

GO:0033553 "rDNA heterochromatin" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005677 "chromatin silencing complex" evidence=IEA

GO:0000183 "chromatin silencing at rDNA" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|E1BJI1 RRP8 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
 Identities = 75/158 (47%), Positives = 110/158 (69%)

Query:    39 YNSKHTPLREKLLNKLKSARFRYLNEQLYTSKSEESKDFFTEDRESFEAYHEGFKKQVTQ 98
             + ++   LR ++  +L  ARFRYLNEQLY+  S  ++  F ED E+F  YH GF+ QV +
Sbjct:   232 HGARAEALRARMAQRLDGARFRYLNEQLYSGPSSAAQRLFQEDPEAFLLYHRGFQNQVKK 291

Query:    99 WPINPVDIIIKSIQERESKGRLVIADLGCGEAKLAAELTQHKVHSLDLVALNERVTSCDM 158
             WP+ PVD I + +++R +   LV+AD GCG+ +LA+ + ++ VH  DL +L+ RVT CDM
Sbjct:   292 WPLQPVDRIARDLRQRPAS--LVVADFGCGDCRLASSI-RNPVHCFDLASLDPRVTVCDM 348

Query:   159 TRTPLKPYSVDVAVFCLSLMGTDLAACIKEANRILKLG 196
              + PL+  S+DVAVFCLSLMGT++   ++EANR+LK G
Sbjct:   349 AQVPLEDESIDVAVFCLSLMGTNIRDFLEEANRVLKPG 386

GO:0072332 "intrinsic apoptotic signaling pathway by p53 class mediator" evidence=IEA

GO:0071158 "positive regulation of cell cycle arrest" evidence=IEA

GO:0046015 "regulation of transcription by glucose" evidence=IEA

GO:0042149 "cellular response to glucose starvation" evidence=IEA

GO:0035064 "methylated histone residue binding" evidence=IEA

GO:0033553 "rDNA heterochromatin" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005677 "chromatin silencing complex" evidence=IEA

GO:0000183 "chromatin silencing at rDNA" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|O43159 RRP8 "Ribosomal RNA-processing protein 8" [Homo sapiens (taxid:9606)]

 Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
 Identities = 76/151 (50%), Positives = 107/151 (70%)

Query:    46 LREKLLNKLKSARFRYLNEQLYTSKSEESKDFFTEDRESFEAYHEGFKKQVTQWPINPVD 105
             LR ++  +L  ARFRYLNEQLY+  S  ++  F ED E+F  YH GF+ QV +WP+ PVD
Sbjct:   238 LRARMAQRLDGARFRYLNEQLYSGPSSAAQRLFQEDPEAFLLYHRGFQSQVKKWPLQPVD 297

Query:   106 IIIKSIQERESKGRLVIADLGCGEAKLAAELTQHKVHSLDLVALNERVTSCDMTRTPLKP 165
              I + +++R +   LV+AD GCG+ +LA+ + ++ VH  DL +L+ RVT CDM + PL+ 
Sbjct:   298 RIARDLRQRPAS--LVVADFGCGDCRLASSI-RNPVHCFDLASLDPRVTVCDMAQVPLED 354

Query:   166 YSVDVAVFCLSLMGTDLAACIKEANRILKLG 196
              SVDVAVFCLSLMGT++   ++EANR+LK G
Sbjct:   355 ESVDVAVFCLSLMGTNIRDFLEEANRVLKPG 385

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0000183 "chromatin silencing at rDNA" evidence=IDA

GO:0033553 "rDNA heterochromatin" evidence=IDA

GO:0035064 "methylated histone residue binding" evidence=IDA

GO:0005677 "chromatin silencing complex" evidence=IDA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=TAS

GO:0072332 "intrinsic apoptotic signaling pathway by p53 class mediator" evidence=IMP

GO:0071158 "positive regulation of cell cycle arrest" evidence=IMP

GO:0046015 "regulation of transcription by glucose" evidence=IMP

GO:0042149 "cellular response to glucose starvation" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|E2QUX8 RRP8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 397 (144.8 bits), Expect = 2.4e-36, P = 2.4e-36
 Identities = 76/151 (50%), Positives = 107/151 (70%)

Query:    46 LREKLLNKLKSARFRYLNEQLYTSKSEESKDFFTEDRESFEAYHEGFKKQVTQWPINPVD 105
             LR ++  +L  ARFRYLNEQLY+  S  ++  F ED E+F  YH GF+ QV +WP+ PVD
Sbjct:   446 LRARMAQRLDGARFRYLNEQLYSKPSSAAQRLFQEDPEAFLLYHRGFQSQVKKWPLQPVD 505

Query:   106 IIIKSIQERESKGRLVIADLGCGEAKLAAELTQHKVHSLDLVALNERVTSCDMTRTPLKP 165
              I + +++R +   LV+AD GCG+ +LA+ + ++ VH  DL +L+ RVT CDM + PL+ 
Sbjct:   506 RIARDLRQRPAS--LVVADFGCGDCRLASSI-RNTVHCFDLASLDPRVTVCDMAQVPLED 562

Query:   166 YSVDVAVFCLSLMGTDLAACIKEANRILKLG 196
              SVDVAVFCLSLMGT++   ++EANR+LK G
Sbjct:   563 ESVDVAVFCLSLMGTNIRDFLEEANRVLKQG 593

GO:0072332 "intrinsic apoptotic signaling pathway by p53 class mediator" evidence=IEA

GO:0071158 "positive regulation of cell cycle arrest" evidence=IEA

GO:0046015 "regulation of transcription by glucose" evidence=IEA

GO:0042149 "cellular response to glucose starvation" evidence=IEA

GO:0035064 "methylated histone residue binding" evidence=IEA

GO:0033553 "rDNA heterochromatin" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005677 "chromatin silencing complex" evidence=IEA

GO:0000183 "chromatin silencing at rDNA" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

ZFIN|ZDB-GENE-030131-8898 wu:fk33d07 "wu:fk33d07" [Danio rerio (taxid:7955)]

 Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
 Identities = 81/195 (41%), Positives = 121/195 (62%)

Query:     2 KLDQPMGSETAHSTSTSNSNVPNILATSSGGHKKEKYYNSKHTPLREKLLNKLKSARFRY 61
             KL + + S+++ + S   +  P   A    G + +       T LR K+  +L++ARFR+
Sbjct:   273 KLRRILKSKSSRTDSDKVTETPKDAAVDLKGVEDQTAPLDPSTALRLKMEKQLEAARFRF 332

Query:    62 LNEQLYTSKSEESKDFFTEDRESFEAYHEGFKKQVTQWPINPVDIIIKSIQERESKGRLV 121
             +NEQLYTS S  +K  F +D ++   YH+G+  QV  WP NPVD II  I ++ +   LV
Sbjct:   333 INEQLYTSTSAAAKRMFQQDPDAITIYHKGYTTQVQHWPTNPVDSIISYICQKPAS--LV 390

Query:   122 IADLGCGEAKLAAELTQHKVHSLDLVALNERVTSCDMTRTPLKPYSVDVAVFCLSLMGTD 181
             +AD GCG+ K+A  + ++KVHS DL  + E  T+CDM + PL   +V++AVFCLSLMGT+
Sbjct:   391 VADFGCGDCKIARSV-KNKVHSFDLAPVCELATACDMAKVPLGDSTVNIAVFCLSLMGTN 449

Query:   182 LAACIKEANRILKLG 196
             L   + EANR+L +G
Sbjct:   450 LGDFLAEANRVLVMG 464

GO:0008168 "methyltransferase activity" evidence=IEA

FB|FBgn0034422 CG7137 [Drosophila melanogaster (taxid:7227)]

 Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
 Identities = 77/159 (48%), Positives = 110/159 (69%)

Query:    41 SKHTPLREKLLNKLKS----ARFRYLNEQLYTSKSEESKDFFTEDRESFEAYHEGFKKQV 96
             S  TP    L +KL+S     RFRY+NEQLY++ S +++  F +D  +FEAYH G+++QV
Sbjct:   133 SSTTPAANSLASKLQSELLGGRFRYINEQLYSTTSRKAEALFRKDSSAFEAYHAGYRQQV 192

Query:    97 TQWPINPVDIIIKSIQERESKGRLVIADLGCGEAKLAAELTQHKVHSLDLVALNERVTSC 156
              +WPINP++ IIK+I++       +I D GCGE KLA  +  +KV+S+DLVA    + +C
Sbjct:   193 EKWPINPLNRIIKTIKKIPKTA--IIGDFGCGEGKLAQSVP-NKVYSMDLVAARSDIIAC 249

Query:   157 DMTRTPLKPYSVDVAVFCLSLMGTDLAACIKEANRILKL 195
             ++T TPL+  ++DVAV+CLSLMGTDL     EANR+LKL
Sbjct:   250 NITDTPLQARTLDVAVYCLSLMGTDLNEFFLEANRVLKL 288

GO:0008168 "methyltransferase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O43159	RRP8_HUMAN	2, ., 1, ., 1, ., -	0.5033	0.7551	0.3245	yes	N/A
Q54CP1	RRP8_DICDI	2, ., 1, ., 1, ., -	0.5448	0.7806	0.3923	yes	N/A
Q5U4F0	RRP8_RAT	2, ., 1, ., 1, ., -	0.5165	0.7551	0.3238	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	196
pfam05148	219	pfam05148, Methyltransf_8, Hypothetical methyltran	8e-68
pfam08241	92	pfam08241, Methyltransf_11, Methyltransferase doma	3e-06

>gnl|CDD|203179 pfam05148, Methyltransf_8, Hypothetical methyltransferase

 Score =  206 bits (525), Expect = 8e-68
 Identities = 85/152 (55%), Positives = 108/152 (71%), Gaps = 3/152 (1%)

Query: 46  LREKLLNKLKSARFRYLNEQLYTSKSEESKDFFTEDRESFEAYHEGFKKQVTQWPINPVD 105
           L  K+  +L   RFR LNE+LYT K   + D F ED ++F+ YHEGF  QV +WP+NP+D
Sbjct: 2   LEAKMKKRLDGGRFRMLNEKLYTGKGSRAGDLFKEDPDAFDLYHEGFNLQVKKWPVNPLD 61

Query: 106 IIIKSIQERESKGRLVIADLGCGEAKLAAELTQ-HKVHSLDLVALNERVTSCDMTRTPLK 164
           +II+ ++ R   G  VIADLGCGEA++A    +   VHS DLVA+N+RV  CDM R PL+
Sbjct: 62  VIIRKLKRRP--GNGVIADLGCGEARIAFRKREFENVHSFDLVAVNKRVIPCDMARVPLE 119

Query: 165 PYSVDVAVFCLSLMGTDLAACIKEANRILKLG 196
             SVDVAVFCLSLMGT++A  +KEANRILK G
Sbjct: 120 DESVDVAVFCLSLMGTNIADFLKEANRILKNG 151

This family consists of several uncharacterized eukaryotic proteins which are related to methyltransferases pfam01209. Length = 219

>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain

 Score = 43.8 bits (104), Expect = 3e-06
 Identities = 23/84 (27%), Positives = 31/84 (36%), Gaps = 13/84 (15%)

Query: 124 DLGCGEAKLAAELTQ---HKVHSLDLVA---------LNERVTSCDMTRTPLKPYSVDVA 171
           D+GCG   LA  L +    +V  +DL              +    D    P    S DV 
Sbjct: 2   DVGCGTGLLAEALARRGGARVTGVDLSPEMLALARKRAPRKFVVGDAEDLPFPDESFDVV 61

Query: 172 VFCLSLM-GTDLAACIKEANRILK 194
           V  L L    D    ++E  R+LK
Sbjct: 62  VSSLVLHHLPDPERALREIARVLK 85

Members of this family are SAM dependent methyltransferases. Length = 92

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	196
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	100.0
KOG3045|consensus	325		100.0
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.79
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.75
PRK05785	226	hypothetical protein; Provisional	99.68
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.67
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.67
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.66
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.64
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.64
PLN02244	340	tocopherol O-methyltransferase	99.63
KOG1540|consensus	296		99.62
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.59
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.57
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.57
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.56
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.55
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.55
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.54
KOG4300|consensus	252		99.52
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.51
PRK11207	197	tellurite resistance protein TehB; Provisional	99.49
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.49
PLN02336	475	phosphoethanolamine N-methyltransferase	99.48
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.45
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.44
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.44
PLN02490	340	MPBQ/MSBQ methyltransferase	99.44
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.44
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.43
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.43
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.42
PRK06922	677	hypothetical protein; Provisional	99.42
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.41
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.4
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.39
PRK08317	241	hypothetical protein; Provisional	99.39
KOG1270|consensus	282		99.38
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.38
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.37
PRK06202	232	hypothetical protein; Provisional	99.37
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	99.37
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.36
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.35
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.35
KOG3010|consensus	261		99.35
PRK12335	287	tellurite resistance protein TehB; Provisional	99.34
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.33
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.3
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.29
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.29
PLN02336	475	phosphoethanolamine N-methyltransferase	99.29
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.29
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.28
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.27
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.27
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.26
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.26
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.22
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.22
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.21
KOG1541|consensus	270		99.2
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.19
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.18
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.17
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.14
PLN03075	296	nicotianamine synthase; Provisional	99.12
TIGR00438	188	rrmJ cell division protein FtsJ.	99.11
COG4976	287	Predicted methyltransferase (contains TPR repeat)	99.1
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.09
PRK14967	223	putative methyltransferase; Provisional	99.07
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.07
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.06
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.06
PRK13256	226	thiopurine S-methyltransferase; Reviewed	99.05
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.04
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.04
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.04
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.03
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.02
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.02
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.0
PRK04266	226	fibrillarin; Provisional	99.0
TIGR03438	301	probable methyltransferase. This model represents	98.99
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	98.98
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	98.98
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	98.97
PTZ00146	293	fibrillarin; Provisional	98.94
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	98.93
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	98.92
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	98.9
KOG2361|consensus	264		98.9
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	98.89
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	98.88
PRK14968	188	putative methyltransferase; Provisional	98.85
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	98.85
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	98.82
KOG1331|consensus	293		98.82
PRK07402	196	precorrin-6B methylase; Provisional	98.81
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	98.77
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	98.76
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	98.76
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	98.76
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	98.75
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	98.74
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	98.72
PLN02232	160	ubiquinone biosynthesis methyltransferase	98.72
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	98.66
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	98.65
KOG2940|consensus	325		98.65
COG4123	248	Predicted O-methyltransferase [General function pr	98.65
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	98.65
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	98.64
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	98.63
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	98.63
PRK00811	283	spermidine synthase; Provisional	98.63
PHA03411	279	putative methyltransferase; Provisional	98.62
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	98.6
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	98.59
PHA03412	241	putative methyltransferase; Provisional	98.55
PRK14901	434	16S rRNA methyltransferase B; Provisional	98.53
PRK10901	427	16S rRNA methyltransferase B; Provisional	98.53
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.53
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	98.52
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	98.51
PRK14904	445	16S rRNA methyltransferase B; Provisional	98.51
PRK04457	262	spermidine synthase; Provisional	98.5
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.49
PRK14903	431	16S rRNA methyltransferase B; Provisional	98.46
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	98.43
KOG1975|consensus	389		98.43
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	98.43
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.43
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	98.42
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.42
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	98.42
KOG1271|consensus	227		98.41
KOG1499|consensus	346		98.4
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	98.4
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	98.39
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	98.38
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	98.38
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	98.38
PRK14902	444	16S rRNA methyltransferase B; Provisional	98.37
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	98.36
PRK04148	134	hypothetical protein; Provisional	98.34
COG2890	280	HemK Methylase of polypeptide chain release factor	98.34
PLN02366	308	spermidine synthase	98.31
PRK01581	374	speE spermidine synthase; Validated	98.29
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	98.29
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	98.28
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.28
KOG1269|consensus	364		98.27
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	98.27
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	98.26
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	98.26
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.25
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	98.24
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	98.22
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	98.22
KOG2904|consensus	328		98.21
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.2
PRK03612	521	spermidine synthase; Provisional	98.17
KOG3420|consensus	185		98.16
COG2521	287	Predicted archaeal methyltransferase [General func	98.14
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	98.12
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.12
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	98.03
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	98.02
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	98.01
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	97.98
KOG2899|consensus	288		97.98
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	97.96
PLN02672	1082	methionine S-methyltransferase	97.92
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	97.91
PLN02476	278	O-methyltransferase	97.9
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	97.9
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	97.89
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	97.89
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	97.87
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	97.85
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	97.84
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	97.81
KOG1500|consensus	517		97.8
KOG0820|consensus	315		97.8
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	97.79
KOG3191|consensus	209		97.75
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	97.75
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	97.64
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	97.63
COG4122	219	Predicted O-methyltransferase [General function pr	97.62
PLN02823	336	spermine synthase	97.6
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	97.58
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	97.5
PLN02589	247	caffeoyl-CoA O-methyltransferase	97.48
COG1041	347	Predicted DNA modification methylase [DNA replicat	97.43
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	97.43
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	97.39
KOG1661|consensus	237		97.34
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	97.31
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	97.29
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	97.29
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	97.28
KOG3987|consensus	288		97.27
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	97.25
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	97.21
KOG4589|consensus	232		97.21
KOG2352|consensus	482		97.15
COG4627	185	Uncharacterized protein conserved in bacteria [Fun	97.15
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	97.11
KOG3178|consensus	342		97.05
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	97.04
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	97.04
PRK00536	262	speE spermidine synthase; Provisional	97.03
KOG1709|consensus	271		97.01
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	97.0
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	96.94
COG4076	252	Predicted RNA methylase [General function predicti	96.94
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	96.87
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	96.8
KOG2798|consensus	369		96.77
PF13679	141	Methyltransf_32: Methyltransferase domain	96.76
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	96.62
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	96.6
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	96.59
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	96.47
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	96.34
COG2265	432	TrmA SAM-dependent methyltransferases related to t	96.23
KOG1663|consensus	237		96.11
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	96.03
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	95.98
KOG2730|consensus	263		95.94
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	95.89
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	95.87
COG4798	238	Predicted methyltransferase [General function pred	95.8
KOG2915|consensus	314		95.79
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	95.79
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	95.7
COG3897	218	Predicted methyltransferase [General function pred	95.69
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	95.51
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	95.5
KOG0822|consensus	649		95.44
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	95.36
COG2520	341	Predicted methyltransferase [General function pred	95.33
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	94.89
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	94.84
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	94.84
KOG2187|consensus	534		94.64
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	94.54
KOG3201|consensus	201		94.23
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	93.96
PLN02668	386	indole-3-acetate carboxyl methyltransferase	93.54
KOG2920|consensus	282		93.42
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	93.14
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	93.1
COG2384	226	Predicted SAM-dependent methyltransferase [General	93.02
KOG1099|consensus	294		92.94
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	92.93
KOG4058|consensus	199		92.79
PTZ00357	1072	methyltransferase; Provisional	92.54
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	92.4
COG0742	187	N6-adenine-specific methylase [DNA replication, re	92.09
PRK10742	250	putative methyltransferase; Provisional	91.88
PF03686	127	UPF0146: Uncharacterised protein family (UPF0146);	91.84
KOG2793|consensus	248		91.8
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	91.27
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	91.0
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	90.74
KOG3115|consensus	249		90.32
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	89.13
COG4262	508	Predicted spermidine synthase with an N-terminal m	88.41
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	87.46
KOG2651|consensus	476		87.11
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	87.04
PHA01634	156	hypothetical protein	87.0
KOG1098|consensus	780		86.3
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	85.23
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	84.54
COG2933	358	Predicted SAM-dependent methyltransferase [General	84.38
COG1255	129	Uncharacterized protein conserved in archaea [Func	82.57
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	81.52
COG1565	370	Uncharacterized conserved protein [Function unknow	81.44
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	80.66
COG3129	292	Predicted SAM-dependent methyltransferase [General	80.2
KOG1501|consensus	636		80.07

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=100.00  E-value=1.2e-43  Score=278.27  Aligned_cols=150  Identities=60%  Similarity=1.010  Sum_probs=117.9

Q ss_pred             HHHHHHHhHhccCCccchhhhccCCChHHHHHHhhhCHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHhhcCCCCCEEEE
Q psy10644         45 PLREKLLNKLKSARFRYLNEQLYTSKSEESKDFFTEDRESFEAYHEGFKKQVTQWPINPVDIIIKSIQERESKGRLVIAD  124 (196)
Q Consensus        45 ~~~~~~~~~~~~~~fr~~ne~~y~~~~~~~~~~~~~~~~~f~~y~~~y~~~~~~w~~~~~~~~~~~l~~~~~~~~~~ILD  124 (196)
                      +||++|+++|.|++||||||++|++.++++.++|.++|++|+.||+||++|+.+||.+|++.++++|...+.  +..|.|
T Consensus         1 ~L~~~m~~kL~gsrFR~lNE~LYT~~s~~A~~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~~~~~--~~viaD   78 (219)
T PF05148_consen    1 SLQEKMREKLSGSRFRWLNEQLYTTSSEEALKLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLKKRPK--SLVIAD   78 (219)
T ss_dssp             -------HHHHHHHHHHHHHHHHHS-HHHHHHHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHCTS-T--TS-EEE
T ss_pred             ChHHHHHHHcccCchHHHHHhHhcCCHHHHHHHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhcCC--CEEEEE
Confidence            478999999999999999999999999999999999999999999999999999999999999999987654  789999


Q ss_pred             EcCCCchhHhhcc-CCeEEEEeCCCCCceEEEecCCCCCCCCCceeeEeecccccccCHHHHHHHHHHhccCC
Q psy10644        125 LGCGEAKLAAELT-QHKVHSLDLVALNERVTSCDMTRTPLKPYSVDVAVFCLSLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       125 lGCG~G~~a~~l~-~~~v~giDls~~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~~d~~~~l~e~~rvLkpg  196 (196)
                      +|||.+.++..+. +.+|+++|+.+.+..++.||+.++|++++++|+||+|++||++|+..+|.|++|+||||
T Consensus        79 ~GCGdA~la~~~~~~~~V~SfDLva~n~~Vtacdia~vPL~~~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~  151 (219)
T PF05148_consen   79 FGCGDAKLAKAVPNKHKVHSFDLVAPNPRVTACDIANVPLEDESVDVAVFCLSLMGTNWPDFIREANRVLKPG  151 (219)
T ss_dssp             ES-TT-HHHHH--S---EEEEESS-SSTTEEES-TTS-S--TT-EEEEEEES---SS-HHHHHHHHHHHEEEE
T ss_pred             CCCchHHHHHhcccCceEEEeeccCCCCCEEEecCccCcCCCCceeEEEEEhhhhCCCcHHHHHHHHheeccC
Confidence            9999999999984 45899999999999999999999999999999999999999999999999999999986

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>KOG3045|consensus

Probab=100.00  E-value=1.6e-41  Score=272.05  Aligned_cols=152  Identities=61%  Similarity=1.002  Sum_probs=146.0

Q ss_pred             CChHHHHHHHhHhccCCccchhhhccCCChHHHHHHhhhCHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHhhcCCCCCE
Q psy10644         42 KHTPLREKLLNKLKSARFRYLNEQLYTSKSEESKDFFTEDRESFEAYHEGFKKQVTQWPINPVDIIIKSIQERESKGRLV  121 (196)
Q Consensus        42 ~~~~~~~~~~~~~~~~~fr~~ne~~y~~~~~~~~~~~~~~~~~f~~y~~~y~~~~~~w~~~~~~~~~~~l~~~~~~~~~~  121 (196)
                      +.++|+++|+.+|.|++|||||||||+..+.+|..+|.++|..|+.||.+|+.|+..||.+|++.|++.|+.++.  +..
T Consensus       106 ~~~~l~~km~~rL~ggrFR~lNEqLYt~~s~~A~~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik~r~~--~~v  183 (325)
T KOG3045|consen  106 EATDLQAKMKKRLDGGRFRYLNEQLYTGTSSEAFDLFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIKRRPK--NIV  183 (325)
T ss_pred             cccCHHHHHHHhhcccceehhhhhhccCCcHHHHHHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhCcC--ceE
Confidence            678999999999999999999999999999999999999999999999999999999999999999999988765  789


Q ss_pred             EEEEcCCCchhHhhccCCeEEEEeCCCCCceEEEecCCCCCCCCCceeeEeecccccccCHHHHHHHHHHhccCC
Q psy10644        122 IADLGCGEAKLAAELTQHKVHSLDLVALNERVTSCDMTRTPLKPYSVDVAVFCLSLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       122 ILDlGCG~G~~a~~l~~~~v~giDls~~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~~d~~~~l~e~~rvLkpg  196 (196)
                      |.|+|||.+.+|... ...|+++|+.+.+.+++.||+.++|++++++|++|+|++||++|+..++.|++|+||||
T Consensus       184 IaD~GCGEakiA~~~-~~kV~SfDL~a~~~~V~~cDm~~vPl~d~svDvaV~CLSLMgtn~~df~kEa~RiLk~g  257 (325)
T KOG3045|consen  184 IADFGCGEAKIASSE-RHKVHSFDLVAVNERVIACDMRNVPLEDESVDVAVFCLSLMGTNLADFIKEANRILKPG  257 (325)
T ss_pred             EEecccchhhhhhcc-ccceeeeeeecCCCceeeccccCCcCccCcccEEEeeHhhhcccHHHHHHHHHHHhccC
Confidence            999999999999754 56899999999999999999999999999999999999999999999999999999997

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.79  E-value=1.3e-18  Score=141.10  Aligned_cols=79  Identities=28%  Similarity=0.380  Sum_probs=72.4

Q ss_pred             CCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC---------------CCceEEEecCCCCCCCCCceeeEeeccccc
Q psy10644        118 GRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDVAVFCLSLM  178 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh  178 (196)
                      ++.+|||||||||.++..+    ...+|+++|+|+               .++.++++|++++||++++||+|+++++|+
T Consensus        51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglr  130 (238)
T COG2226          51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLR  130 (238)
T ss_pred             CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehhh
Confidence            5899999999999999888    346999999998               248899999999999999999999999995


Q ss_pred             -ccCHHHHHHHHHHhccCC
Q psy10644        179 -GTDLAACIKEANRILKLG  196 (196)
Q Consensus       179 -~~d~~~~l~e~~rvLkpg  196 (196)
                       ..|++++|+|++||||||
T Consensus       131 nv~d~~~aL~E~~RVlKpg  149 (238)
T COG2226         131 NVTDIDKALKEMYRVLKPG  149 (238)
T ss_pred             cCCCHHHHHHHHHHhhcCC
Confidence             559999999999999997

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.75  E-value=3.8e-18  Score=138.67  Aligned_cols=80  Identities=25%  Similarity=0.376  Sum_probs=60.5

Q ss_pred             CCCCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC---------------CCceEEEecCCCCCCCCCceeeEeeccc
Q psy10644        117 KGRLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDVAVFCLS  176 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~  176 (196)
                      .++.+|||+|||||.++..+     +..+|+|+|+|+               .++.++++|++++|+++++||+|+++++
T Consensus        46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fg  125 (233)
T PF01209_consen   46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFG  125 (233)
T ss_dssp             -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-
T ss_pred             CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhh
Confidence            44789999999999998877     235999999999               3789999999999999999999999999


Q ss_pred             cccc-CHHHHHHHHHHhccCC
Q psy10644        177 LMGT-DLAACIKEANRILKLG  196 (196)
Q Consensus       177 lh~~-d~~~~l~e~~rvLkpg  196 (196)
                      +|.. |+.++++|++|+||||
T Consensus       126 lrn~~d~~~~l~E~~RVLkPG  146 (233)
T PF01209_consen  126 LRNFPDRERALREMYRVLKPG  146 (233)
T ss_dssp             GGG-SSHHHHHHHHHHHEEEE
T ss_pred             HHhhCCHHHHHHHHHHHcCCC
Confidence            9755 9999999999999997

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PRK05785 hypothetical protein; Provisional

Probab=99.68  E-value=4.3e-16  Score=126.09  Aligned_cols=89  Identities=18%  Similarity=0.270  Sum_probs=72.8

Q ss_pred             HHHHHHHhhcCCCCCEEEEEcCCCchhHhhcc---CCeEEEEeCCCC-------CceEEEecCCCCCCCCCceeeEeecc
Q psy10644        106 IIIKSIQERESKGRLVIADLGCGEAKLAAELT---QHKVHSLDLVAL-------NERVTSCDMTRTPLKPYSVDVAVFCL  175 (196)
Q Consensus       106 ~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l~---~~~v~giDls~~-------~~~~~~~d~~~lp~~~~sfD~Vi~~~  175 (196)
                      .+++.+..... ++.+|||||||||.++..+.   +.+|+|+|+|+.       ...++++|++.+|+++++||+|++.+
T Consensus        40 ~~~~~l~~~~~-~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~~~~~~d~~~lp~~d~sfD~v~~~~  118 (226)
T PRK05785         40 ELVKTILKYCG-RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVADDKVVGSFEALPFRDKSFDVVMSSF  118 (226)
T ss_pred             HHHHHHHHhcC-CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhccceEEechhhCCCCCCCEEEEEecC
Confidence            34444433222 26799999999999988882   469999999992       34568899999999999999999999


Q ss_pred             ccccc-CHHHHHHHHHHhccC
Q psy10644        176 SLMGT-DLAACIKEANRILKL  195 (196)
Q Consensus       176 ~lh~~-d~~~~l~e~~rvLkp  195 (196)
                      ++|+. |++++++|++|+|||
T Consensus       119 ~l~~~~d~~~~l~e~~RvLkp  139 (226)
T PRK05785        119 ALHASDNIEKVIAEFTRVSRK  139 (226)
T ss_pred             hhhccCCHHHHHHHHHHHhcC
Confidence            99654 999999999999997

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.67  E-value=1.5e-16  Score=109.99  Aligned_cols=74  Identities=30%  Similarity=0.420  Sum_probs=63.9

Q ss_pred             EEEcCCCchhHhhc--c-CCeEEEEeCCC------------CCceEEEecCCCCCCCCCceeeEeeccccccc-CHHHHH
Q psy10644        123 ADLGCGEAKLAAEL--T-QHKVHSLDLVA------------LNERVTSCDMTRTPLKPYSVDVAVFCLSLMGT-DLAACI  186 (196)
Q Consensus       123 LDlGCG~G~~a~~l--~-~~~v~giDls~------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~~-d~~~~l  186 (196)
                      ||+|||+|..+..+  . +.+|+++|+++            .++.+..+|++.+|+++++||+|++..++|+. ++..++
T Consensus         1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~~~~l   80 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDPEAAL   80 (95)
T ss_dssp             EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSSHHHHHH
T ss_pred             CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeeccCHHHHH
Confidence            89999999999998  3 67999999998            35669999999999999999999999999765 999999


Q ss_pred             HHHHHhccCC
Q psy10644        187 KEANRILKLG  196 (196)
Q Consensus       187 ~e~~rvLkpg  196 (196)
                      +|++|+||||
T Consensus        81 ~e~~rvLk~g   90 (95)
T PF08241_consen   81 REIYRVLKPG   90 (95)
T ss_dssp             HHHHHHEEEE
T ss_pred             HHHHHHcCcC
Confidence            9999999996

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.67  E-value=7.7e-16  Score=127.13  Aligned_cols=80  Identities=30%  Similarity=0.346  Sum_probs=70.3

Q ss_pred             CCCCEEEEEcCCCchhHhhcc-----CCeEEEEeCCC------------------CCceEEEecCCCCCCCCCceeeEee
Q psy10644        117 KGRLVIADLGCGEAKLAAELT-----QHKVHSLDLVA------------------LNERVTSCDMTRTPLKPYSVDVAVF  173 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l~-----~~~v~giDls~------------------~~~~~~~~d~~~lp~~~~sfD~Vi~  173 (196)
                      .++.+|||+|||+|.++..+.     ..+|+|+|+|+                  .++.++++|++++|+++++||+|++
T Consensus        72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~  151 (261)
T PLN02233         72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITM  151 (261)
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEE
Confidence            347899999999999887762     25899999998                  1467899999999999999999999


Q ss_pred             ccccccc-CHHHHHHHHHHhccCC
Q psy10644        174 CLSLMGT-DLAACIKEANRILKLG  196 (196)
Q Consensus       174 ~~~lh~~-d~~~~l~e~~rvLkpg  196 (196)
                      .+++|+. |+..+++|++|+||||
T Consensus       152 ~~~l~~~~d~~~~l~ei~rvLkpG  175 (261)
T PLN02233        152 GYGLRNVVDRLKAMQEMYRVLKPG  175 (261)
T ss_pred             ecccccCCCHHHHHHHHHHHcCcC
Confidence            9999755 9999999999999997

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.66  E-value=7.3e-16  Score=130.61  Aligned_cols=79  Identities=16%  Similarity=0.148  Sum_probs=70.2

Q ss_pred             CCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC----------------CCceEEEecCCCCCCCCCceeeEeecccc-c
Q psy10644        118 GRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAVFCLSL-M  178 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l-h  178 (196)
                      ++.+|||||||+|.++..+  .+.+|+|+|+++                .++.++++|++++++++++||+|++..+| |
T Consensus       131 ~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeH  210 (322)
T PLN02396        131 EGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEH  210 (322)
T ss_pred             CCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHHh
Confidence            4679999999999998888  567999999997                15778889998888888899999999999 5


Q ss_pred             ccCHHHHHHHHHHhccCC
Q psy10644        179 GTDLAACIKEANRILKLG  196 (196)
Q Consensus       179 ~~d~~~~l~e~~rvLkpg  196 (196)
                      ..|+..++++++|+||||
T Consensus       211 v~d~~~~L~~l~r~LkPG  228 (322)
T PLN02396        211 VANPAEFCKSLSALTIPN  228 (322)
T ss_pred             cCCHHHHHHHHHHHcCCC
Confidence            559999999999999997

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.64  E-value=3.6e-15  Score=122.02  Aligned_cols=79  Identities=23%  Similarity=0.358  Sum_probs=70.2

Q ss_pred             CCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC----------CCceEEEecCCCCCCCCCceeeEeeccccccc-CHHH
Q psy10644        118 GRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA----------LNERVTSCDMTRTPLKPYSVDVAVFCLSLMGT-DLAA  184 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~----------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~~-d~~~  184 (196)
                      +..+|||+|||+|.++..+  .+.+|+++|+|+          ....++++|++.+|+++++||+|++..++|+. ++..
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~~d~~~  121 (251)
T PRK10258         42 KFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLAWSNLAVQWCGNLST  121 (251)
T ss_pred             CCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECchhhhcCCHHH
Confidence            3578999999999998888  467999999998          23578899999999999999999999999765 9999


Q ss_pred             HHHHHHHhccCC
Q psy10644        185 CIKEANRILKLG  196 (196)
Q Consensus       185 ~l~e~~rvLkpg  196 (196)
                      +|.+++|+||||
T Consensus       122 ~l~~~~~~Lk~g  133 (251)
T PRK10258        122 ALRELYRVVRPG  133 (251)
T ss_pred             HHHHHHHHcCCC
Confidence            999999999997

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.64  E-value=1.6e-15  Score=124.59  Aligned_cols=89  Identities=19%  Similarity=0.183  Sum_probs=74.0

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC--------CCceEEEecCCCCCCCCCceeeE
Q psy10644        104 VDIIIKSIQERESKGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA--------LNERVTSCDMTRTPLKPYSVDVA  171 (196)
Q Consensus       104 ~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~--------~~~~~~~~d~~~lp~~~~sfD~V  171 (196)
                      ...+++.+   ...++.+|||||||+|.++..+    ++.+|+|+|+|+        .++.++.+|++.++ ++++||+|
T Consensus        18 ~~~ll~~l---~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~-~~~~fD~v   93 (255)
T PRK14103         18 FYDLLARV---GAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARERGVDARTGDVRDWK-PKPDTDVV   93 (255)
T ss_pred             HHHHHHhC---CCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhcCCcEEEcChhhCC-CCCCceEE
Confidence            34444444   3345789999999999998888    256999999998        46889999998775 56799999


Q ss_pred             eeccccccc-CHHHHHHHHHHhccCC
Q psy10644        172 VFCLSLMGT-DLAACIKEANRILKLG  196 (196)
Q Consensus       172 i~~~~lh~~-d~~~~l~e~~rvLkpg  196 (196)
                      ++..++|+. ++..++++++++||||
T Consensus        94 ~~~~~l~~~~d~~~~l~~~~~~Lkpg  119 (255)
T PRK14103         94 VSNAALQWVPEHADLLVRWVDELAPG  119 (255)
T ss_pred             EEehhhhhCCCHHHHHHHHHHhCCCC
Confidence            999999765 9999999999999997

>PLN02244 tocopherol O-methyltransferase

Probab=99.63  E-value=3.1e-15  Score=127.93  Aligned_cols=80  Identities=21%  Similarity=0.205  Sum_probs=71.4

Q ss_pred             CCCCEEEEEcCCCchhHhhc---cCCeEEEEeCCC----------------CCceEEEecCCCCCCCCCceeeEeecccc
Q psy10644        117 KGRLVIADLGCGEAKLAAEL---TQHKVHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAVFCLSL  177 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l---~~~~v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l  177 (196)
                      .++.+|||||||+|.++..+   .+.+|+|+|+|+                .++.++++|+.++|+++++||+|++..++
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~  196 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESG  196 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCch
Confidence            35679999999999998888   257999999998                25789999999999999999999999999


Q ss_pred             -cccCHHHHHHHHHHhccCC
Q psy10644        178 -MGTDLAACIKEANRILKLG  196 (196)
Q Consensus       178 -h~~d~~~~l~e~~rvLkpg  196 (196)
                       |..|...++++++|+||||
T Consensus       197 ~h~~d~~~~l~e~~rvLkpG  216 (340)
T PLN02244        197 EHMPDKRKFVQELARVAAPG  216 (340)
T ss_pred             hccCCHHHHHHHHHHHcCCC
Confidence             5559999999999999997

>KOG1540|consensus

Probab=99.62  E-value=5.3e-15  Score=119.45  Aligned_cols=82  Identities=22%  Similarity=0.314  Sum_probs=74.0

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc----c------CCeEEEEeCCC------------------CCceEEEecCCCCCCCCC
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL----T------QHKVHSLDLVA------------------LNERVTSCDMTRTPLKPY  166 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l----~------~~~v~giDls~------------------~~~~~~~~d~~~lp~~~~  166 (196)
                      .+.+++++||++||||.++..+    .      +.+|+.+|+++                  ..+.|+.+|++.+||+++
T Consensus        97 ~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~  176 (296)
T KOG1540|consen   97 GPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDD  176 (296)
T ss_pred             CCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCC
Confidence            5566899999999999998888    2      25899999999                  237889999999999999


Q ss_pred             ceeeEeecccc-cccCHHHHHHHHHHhccCC
Q psy10644        167 SVDVAVFCLSL-MGTDLAACIKEANRILKLG  196 (196)
Q Consensus       167 sfD~Vi~~~~l-h~~d~~~~l~e~~rvLkpg  196 (196)
                      +||+.++.+.+ .+++++++|+|++||||||
T Consensus       177 s~D~yTiafGIRN~th~~k~l~EAYRVLKpG  207 (296)
T KOG1540|consen  177 SFDAYTIAFGIRNVTHIQKALREAYRVLKPG  207 (296)
T ss_pred             cceeEEEecceecCCCHHHHHHHHHHhcCCC
Confidence            99999999999 7889999999999999998

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.59  E-value=2.8e-14  Score=115.16  Aligned_cols=82  Identities=22%  Similarity=0.343  Sum_probs=70.4

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC---------------CCceEEEecCCCCCCCCCceeeEeec
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDVAVFC  174 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~  174 (196)
                      ...++.+|||+|||+|.++..+     ...+|+|+|+++               .++.++.+|+..+++++++||+|++.
T Consensus        42 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~  121 (231)
T TIGR02752        42 NVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIG  121 (231)
T ss_pred             CCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEe
Confidence            4445789999999999998777     235999999997               25788899998888888999999999


Q ss_pred             ccccc-cCHHHHHHHHHHhccCC
Q psy10644        175 LSLMG-TDLAACIKEANRILKLG  196 (196)
Q Consensus       175 ~~lh~-~d~~~~l~e~~rvLkpg  196 (196)
                      +++|+ .++.++++++.|+||||
T Consensus       122 ~~l~~~~~~~~~l~~~~~~Lk~g  144 (231)
T TIGR02752       122 FGLRNVPDYMQVLREMYRVVKPG  144 (231)
T ss_pred             cccccCCCHHHHHHHHHHHcCcC
Confidence            99965 59999999999999997

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.57  E-value=1.5e-14  Score=119.53  Aligned_cols=93  Identities=14%  Similarity=0.165  Sum_probs=76.1

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc---cCCeEEEEeCCC-------------CCceEEEecCCCCCCCCCc
Q psy10644        104 VDIIIKSIQERESKGRLVIADLGCGEAKLAAEL---TQHKVHSLDLVA-------------LNERVTSCDMTRTPLKPYS  167 (196)
Q Consensus       104 ~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l---~~~~v~giDls~-------------~~~~~~~~d~~~lp~~~~s  167 (196)
                      .+.....+......++.+|||||||+|..+..+   .+++|+|+|+|+             .++.+..+|+...|+++++
T Consensus        38 ~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~  117 (263)
T PTZ00098         38 IEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENT  117 (263)
T ss_pred             hHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCC
Confidence            344444444445556889999999999988877   356999999997             2578889999888999999


Q ss_pred             eeeEeecccc-ccc--CHHHHHHHHHHhccCC
Q psy10644        168 VDVAVFCLSL-MGT--DLAACIKEANRILKLG  196 (196)
Q Consensus       168 fD~Vi~~~~l-h~~--d~~~~l~e~~rvLkpg  196 (196)
                      ||+|++..++ |..  ++..+|++++++||||
T Consensus       118 FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPG  149 (263)
T PTZ00098        118 FDMIYSRDAILHLSYADKKKLFEKCYKWLKPN  149 (263)
T ss_pred             eEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCC
Confidence            9999998887 544  8899999999999997

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.57  E-value=1.7e-15  Score=121.66  Aligned_cols=79  Identities=20%  Similarity=0.256  Sum_probs=68.2

Q ss_pred             CCCEEEEEcCCCchhHhhc--cCCeEEEEeCCCC--------------CceEEEecCCCCCCCCCceeeEeecccc-ccc
Q psy10644        118 GRLVIADLGCGEAKLAAEL--TQHKVHSLDLVAL--------------NERVTSCDMTRTPLKPYSVDVAVFCLSL-MGT  180 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~~--------------~~~~~~~d~~~lp~~~~sfD~Vi~~~~l-h~~  180 (196)
                      .+.+|||||||-|.+++.|  .|..|+|+|+++.              ++.+.+..++++....++||+|+|..+| |..
T Consensus        59 ~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~  138 (243)
T COG2227          59 PGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHVP  138 (243)
T ss_pred             CCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHccC
Confidence            5889999999999999999  6889999999992              3345566666665556899999999999 778


Q ss_pred             CHHHHHHHHHHhccCC
Q psy10644        181 DLAACIKEANRILKLG  196 (196)
Q Consensus       181 d~~~~l~e~~rvLkpg  196 (196)
                      |+..+++.+.++||||
T Consensus       139 dp~~~~~~c~~lvkP~  154 (243)
T COG2227         139 DPESFLRACAKLVKPG  154 (243)
T ss_pred             CHHHHHHHHHHHcCCC
Confidence            9999999999999997

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.56  E-value=2e-14  Score=118.12  Aligned_cols=80  Identities=26%  Similarity=0.299  Sum_probs=68.9

Q ss_pred             CCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC----------------CCceEEEecCCCCC-CCCCceeeEeecccc
Q psy10644        117 KGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA----------------LNERVTSCDMTRTP-LKPYSVDVAVFCLSL  177 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~----------------~~~~~~~~d~~~lp-~~~~sfD~Vi~~~~l  177 (196)
                      .++.+|||+|||+|.++..+  .+.+|+++|+|+                .++.++++|+.+++ +++++||+|++..++
T Consensus        43 ~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl  122 (255)
T PRK11036         43 PRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVL  122 (255)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHH
Confidence            34679999999999999888  567999999998                24678888887763 667899999999999


Q ss_pred             ccc-CHHHHHHHHHHhccCC
Q psy10644        178 MGT-DLAACIKEANRILKLG  196 (196)
Q Consensus       178 h~~-d~~~~l~e~~rvLkpg  196 (196)
                      |+. ++..++.++.++||||
T Consensus       123 ~~~~~~~~~l~~~~~~Lkpg  142 (255)
T PRK11036        123 EWVADPKSVLQTLWSVLRPG  142 (255)
T ss_pred             HhhCCHHHHHHHHHHHcCCC
Confidence            655 9999999999999997

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.55  E-value=4.1e-14  Score=116.14  Aligned_cols=81  Identities=19%  Similarity=0.254  Sum_probs=69.0

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC----------CCceEEEecCCCCCCCCCceeeEeeccccccc
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA----------LNERVTSCDMTRTPLKPYSVDVAVFCLSLMGT  180 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~----------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~~  180 (196)
                      ...++.+|||||||+|.++..+    ++.+|+|+|+|+          .++.++.+|+..+. ++++||+|++..++|+.
T Consensus        28 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~  106 (258)
T PRK01683         28 PLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQ-PPQALDLIFANASLQWL  106 (258)
T ss_pred             CCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccC-CCCCccEEEEccChhhC
Confidence            3345789999999999998777    357999999998          46788999987764 45699999999999766


Q ss_pred             -CHHHHHHHHHHhccCC
Q psy10644        181 -DLAACIKEANRILKLG  196 (196)
Q Consensus       181 -d~~~~l~e~~rvLkpg  196 (196)
                       +...++++++++||||
T Consensus       107 ~d~~~~l~~~~~~Lkpg  123 (258)
T PRK01683        107 PDHLELFPRLVSLLAPG  123 (258)
T ss_pred             CCHHHHHHHHHHhcCCC
Confidence             9999999999999997

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.55  E-value=1.7e-14  Score=109.53  Aligned_cols=78  Identities=28%  Similarity=0.386  Sum_probs=68.0

Q ss_pred             CCCEEEEEcCCCchhHhhcc-----CCeEEEEeCCC---------------CCceEEEecCCCCC--CCCCceeeEeecc
Q psy10644        118 GRLVIADLGCGEAKLAAELT-----QHKVHSLDLVA---------------LNERVTSCDMTRTP--LKPYSVDVAVFCL  175 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l~-----~~~v~giDls~---------------~~~~~~~~d~~~lp--~~~~sfD~Vi~~~  175 (196)
                      ++.+|||+|||+|.++..+.     +.+|+|+|+++               .++.++++|+.+++  ++ +.||+|++..
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~~   81 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISNG   81 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEES
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEcC
Confidence            47899999999999988883     67999999999               47899999998877  65 8999999999


Q ss_pred             ccccc-CHHHHHHHHHHhccCC
Q psy10644        176 SLMGT-DLAACIKEANRILKLG  196 (196)
Q Consensus       176 ~lh~~-d~~~~l~e~~rvLkpg  196 (196)
                      ++|+. ++..+++++.++||+|
T Consensus        82 ~l~~~~~~~~~l~~~~~~lk~~  103 (152)
T PF13847_consen   82 VLHHFPDPEKVLKNIIRLLKPG  103 (152)
T ss_dssp             TGGGTSHHHHHHHHHHHHEEEE
T ss_pred             chhhccCHHHHHHHHHHHcCCC
Confidence            99655 8889999999999975

...

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.54  E-value=1.4e-14  Score=109.65  Aligned_cols=92  Identities=24%  Similarity=0.332  Sum_probs=71.3

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCCC-----CceEEEecCCCCCCCCCceeeEeeccc
Q psy10644        104 VDIIIKSIQERESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVAL-----NERVTSCDMTRTPLKPYSVDVAVFCLS  176 (196)
Q Consensus       104 ~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~~-----~~~~~~~d~~~lp~~~~sfD~Vi~~~~  176 (196)
                      +..++..+... ..++.+|||||||+|.++..+  .+.+|+|+|+++.     +......+....+.++++||+|+++.+
T Consensus         9 ~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~   87 (161)
T PF13489_consen    9 YADLLERLLPR-LKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEKRNVVFDNFDAQDPPFPDGSFDLIICNDV   87 (161)
T ss_dssp             HHHHHHHHHTC-TTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHHTTSEEEEEECHTHHCHSSSEEEEEEESS
T ss_pred             HHHHHHHHhcc-cCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhhhhhhhhhhhhhhhhccccchhhHhhHHH
Confidence            44444444321 234789999999999999998  5569999999983     344455545555667899999999999


Q ss_pred             cccc-CHHHHHHHHHHhccCC
Q psy10644        177 LMGT-DLAACIKEANRILKLG  196 (196)
Q Consensus       177 lh~~-d~~~~l~e~~rvLkpg  196 (196)
                      ||+. |+..+|++++++||||
T Consensus        88 l~~~~d~~~~l~~l~~~Lkpg  108 (161)
T PF13489_consen   88 LEHLPDPEEFLKELSRLLKPG  108 (161)
T ss_dssp             GGGSSHHHHHHHHHHHCEEEE
T ss_pred             HhhcccHHHHHHHHHHhcCCC
Confidence            9655 9999999999999986

...

>KOG4300|consensus

Probab=99.52  E-value=7e-14  Score=109.86  Aligned_cols=78  Identities=26%  Similarity=0.299  Sum_probs=69.5

Q ss_pred             CCEEEEEcCCCchhHhhc---cCCeEEEEeCCC---------------CCce-EEEecCCCCC-CCCCceeeEeeccccc
Q psy10644        119 RLVIADLGCGEAKLAAEL---TQHKVHSLDLVA---------------LNER-VTSCDMTRTP-LKPYSVDVAVFCLSLM  178 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l---~~~~v~giDls~---------------~~~~-~~~~d~~~lp-~~~~sfD~Vi~~~~lh  178 (196)
                      ...+|+||||||..-.+.   ++++|+++|.++               .++. |++++.+++| ++++++|+||+.++|.
T Consensus        77 K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLC  156 (252)
T KOG4300|consen   77 KGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVLC  156 (252)
T ss_pred             ccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEEe
Confidence            457899999999988887   577999999998               3444 8899999998 9999999999999995


Q ss_pred             -ccCHHHHHHHHHHhccCC
Q psy10644        179 -GTDLAACIKEANRILKLG  196 (196)
Q Consensus       179 -~~d~~~~l~e~~rvLkpg  196 (196)
                       ..|+.+.|+|+.|+||||
T Consensus       157 Sve~~~k~L~e~~rlLRpg  175 (252)
T KOG4300|consen  157 SVEDPVKQLNEVRRLLRPG  175 (252)
T ss_pred             ccCCHHHHHHHHHHhcCCC
Confidence             559999999999999997

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.51  E-value=5e-14  Score=113.32  Aligned_cols=92  Identities=29%  Similarity=0.408  Sum_probs=74.8

Q ss_pred             HHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC-----------CCceEEEecCCCCCCCCCcee
Q psy10644        105 DIIIKSIQERESKGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA-----------LNERVTSCDMTRTPLKPYSVD  169 (196)
Q Consensus       105 ~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~-----------~~~~~~~~d~~~lp~~~~sfD  169 (196)
                      ..+++.+.........+|||||||+|.++..+    ...+|+++|+++           .++.++.+|++..++++++||
T Consensus        21 ~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD  100 (240)
T TIGR02072        21 KRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFD  100 (240)
T ss_pred             HHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCcee
Confidence            34445554333233578999999999988777    345799999997           257889999999998889999


Q ss_pred             eEeeccccccc-CHHHHHHHHHHhccCC
Q psy10644        170 VAVFCLSLMGT-DLAACIKEANRILKLG  196 (196)
Q Consensus       170 ~Vi~~~~lh~~-d~~~~l~e~~rvLkpg  196 (196)
                      +|++..++|+. ++..++.+++++||||
T Consensus       101 ~vi~~~~l~~~~~~~~~l~~~~~~L~~~  128 (240)
T TIGR02072       101 LIVSNLALQWCDDLSQALSELARVLKPG  128 (240)
T ss_pred             EEEEhhhhhhccCHHHHHHHHHHHcCCC
Confidence            99999999766 9999999999999997

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.49  E-value=1.2e-13  Score=109.59  Aligned_cols=92  Identities=18%  Similarity=0.212  Sum_probs=73.5

Q ss_pred             CChHHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC---------------CCceEEEecCCCCCC
Q psy10644        101 INPVDIIIKSIQERESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA---------------LNERVTSCDMTRTPL  163 (196)
Q Consensus       101 ~~~~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~---------------~~~~~~~~d~~~lp~  163 (196)
                      ..+...+++.+..   .++.+|||+|||+|.++..|  .+.+|+|+|+|+               .++.+.+.|+..+++
T Consensus        16 ~~~~~~l~~~l~~---~~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~   92 (197)
T PRK11207         16 TRTHSEVLEAVKV---VKPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTF   92 (197)
T ss_pred             CCChHHHHHhccc---CCCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCc
Confidence            3445566666532   23679999999999999988  467999999998               246788888887777


Q ss_pred             CCCceeeEeeccccccc---CHHHHHHHHHHhccCC
Q psy10644        164 KPYSVDVAVFCLSLMGT---DLAACIKEANRILKLG  196 (196)
Q Consensus       164 ~~~sfD~Vi~~~~lh~~---d~~~~l~e~~rvLkpg  196 (196)
                      + ++||+|++..++|+.   +...++++++++||||
T Consensus        93 ~-~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~Lkpg  127 (197)
T PRK11207         93 D-GEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPG  127 (197)
T ss_pred             C-CCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCC
Confidence            4 579999999999754   5789999999999997

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.49  E-value=1e-13  Score=117.73  Aligned_cols=79  Identities=15%  Similarity=0.156  Sum_probs=68.3

Q ss_pred             CCCCEEEEEcCCCchhHhhc--cC-CeEEEEeCCC----------------CCceEEEecCCCCCCCCCceeeEeecccc
Q psy10644        117 KGRLVIADLGCGEAKLAAEL--TQ-HKVHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAVFCLSL  177 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l--~~-~~v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l  177 (196)
                      ..+.+|||||||+|.++..+  .+ ..|+|+|+|+                .++.++.+|++.+|+ ++.||+|+|..++
T Consensus       121 l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl  199 (322)
T PRK15068        121 LKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVL  199 (322)
T ss_pred             CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChh
Confidence            45689999999999998888  23 3699999988                257888899999988 7899999999999


Q ss_pred             cc-cCHHHHHHHHHHhccCC
Q psy10644        178 MG-TDLAACIKEANRILKLG  196 (196)
Q Consensus       178 h~-~d~~~~l~e~~rvLkpg  196 (196)
                      |+ .++..+|++++++||||
T Consensus       200 ~H~~dp~~~L~~l~~~LkpG  219 (322)
T PRK15068        200 YHRRSPLDHLKQLKDQLVPG  219 (322)
T ss_pred             hccCCHHHHHHHHHHhcCCC
Confidence            54 59999999999999997

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.48  E-value=2.8e-13  Score=120.47  Aligned_cols=81  Identities=22%  Similarity=0.185  Sum_probs=70.6

Q ss_pred             CCCCCEEEEEcCCCchhHhhc---cCCeEEEEeCCC--------------CCceEEEecCCCCCCCCCceeeEeecccc-
Q psy10644        116 SKGRLVIADLGCGEAKLAAEL---TQHKVHSLDLVA--------------LNERVTSCDMTRTPLKPYSVDVAVFCLSL-  177 (196)
Q Consensus       116 ~~~~~~ILDlGCG~G~~a~~l---~~~~v~giDls~--------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l-  177 (196)
                      ..++.+|||||||+|.++..+   .+++|+|+|+|+              .++.+..+|+...++++++||+|++..++ 
T Consensus       264 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~  343 (475)
T PLN02336        264 LKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDTIL  343 (475)
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEEECCccc
Confidence            345789999999999887766   367999999996              25788899998888888999999999999 


Q ss_pred             cccCHHHHHHHHHHhccCC
Q psy10644        178 MGTDLAACIKEANRILKLG  196 (196)
Q Consensus       178 h~~d~~~~l~e~~rvLkpg  196 (196)
                      |..++..++++++|+||||
T Consensus       344 h~~d~~~~l~~~~r~Lkpg  362 (475)
T PLN02336        344 HIQDKPALFRSFFKWLKPG  362 (475)
T ss_pred             ccCCHHHHHHHHHHHcCCC
Confidence            5669999999999999997

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.45  E-value=1.7e-13  Score=107.16  Aligned_cols=87  Identities=23%  Similarity=0.284  Sum_probs=73.5

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc---cCCeEEEEeCCC--------CCceEEEecCCC-C-CCCCCceee
Q psy10644        104 VDIIIKSIQERESKGRLVIADLGCGEAKLAAEL---TQHKVHSLDLVA--------LNERVTSCDMTR-T-PLKPYSVDV  170 (196)
Q Consensus       104 ~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l---~~~~v~giDls~--------~~~~~~~~d~~~-l-p~~~~sfD~  170 (196)
                      ...+.+++   .  ++.+|||||||.|.+...|   .+.+.+|+|+++        ..+.++++|++. + .|++++||.
T Consensus         4 ~~~I~~~I---~--pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~   78 (193)
T PF07021_consen    4 LQIIAEWI---E--PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDY   78 (193)
T ss_pred             HHHHHHHc---C--CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccE
Confidence            34455555   3  3889999999999999999   567899999999        578899999965 5 489999999


Q ss_pred             Eeecccc-cccCHHHHHHHHHHhccC
Q psy10644        171 AVFCLSL-MGTDLAACIKEANRILKL  195 (196)
Q Consensus       171 Vi~~~~l-h~~d~~~~l~e~~rvLkp  195 (196)
                      ||++.+| +..++...|+|+.|+-|.
T Consensus        79 VIlsqtLQ~~~~P~~vL~EmlRVgr~  104 (193)
T PF07021_consen   79 VILSQTLQAVRRPDEVLEEMLRVGRR  104 (193)
T ss_pred             EehHhHHHhHhHHHHHHHHHHHhcCe
Confidence            9999999 666999999999998663

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.44  E-value=5.2e-13  Score=106.52  Aligned_cols=75  Identities=17%  Similarity=0.180  Sum_probs=64.0

Q ss_pred             CCEEEEEcCCCchhHhhc----cCCeEEEEeCCC----------CCceEEEecCCCCCCCCCceeeEeeccccccc---C
Q psy10644        119 RLVIADLGCGEAKLAAEL----TQHKVHSLDLVA----------LNERVTSCDMTRTPLKPYSVDVAVFCLSLMGT---D  181 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l----~~~~v~giDls~----------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~~---d  181 (196)
                      +.+|||||||+|.++..|    .+.+|+|+|+|+          .++.+..+|+.. |+++++||+|++..+||+.   +
T Consensus        44 ~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~hl~p~~  122 (204)
T TIGR03587        44 IASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFD-PFKDNFFDLVLTKGVLIHINPDN  122 (204)
T ss_pred             CCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccC-CCCCCCEEEEEECChhhhCCHHH
Confidence            678999999999988877    357999999998          357788889877 8889999999999999443   4


Q ss_pred             HHHHHHHHHHhcc
Q psy10644        182 LAACIKEANRILK  194 (196)
Q Consensus       182 ~~~~l~e~~rvLk  194 (196)
                      ..+++++++|+++
T Consensus       123 ~~~~l~el~r~~~  135 (204)
T TIGR03587       123 LPTAYRELYRCSN  135 (204)
T ss_pred             HHHHHHHHHhhcC
Confidence            6789999999875

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.44  E-value=5.5e-13  Score=105.53  Aligned_cols=91  Identities=16%  Similarity=0.207  Sum_probs=71.0

Q ss_pred             ChHHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC------------C--CceEEEecCCCCCCCC
Q psy10644        102 NPVDIIIKSIQERESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA------------L--NERVTSCDMTRTPLKP  165 (196)
Q Consensus       102 ~~~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~------------~--~~~~~~~d~~~lp~~~  165 (196)
                      .....+++.+...   ++.+|||+|||+|.++..+  .+.+|+|+|+|+            .  ++.+..+|+...+++ 
T Consensus        17 ~~~~~l~~~~~~~---~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-   92 (195)
T TIGR00477        17 TTHSAVREAVKTV---APCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALN-   92 (195)
T ss_pred             CchHHHHHHhccC---CCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcccc-
Confidence            4455666665432   2569999999999999888  567999999998            1  355667777666664 


Q ss_pred             CceeeEeeccccccc---CHHHHHHHHHHhccCC
Q psy10644        166 YSVDVAVFCLSLMGT---DLAACIKEANRILKLG  196 (196)
Q Consensus       166 ~sfD~Vi~~~~lh~~---d~~~~l~e~~rvLkpg  196 (196)
                      ++||+|++..++|+.   +...++++++|+||||
T Consensus        93 ~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~Lkpg  126 (195)
T TIGR00477        93 EDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPG  126 (195)
T ss_pred             CCCCEEEEecccccCCHHHHHHHHHHHHHHhCCC
Confidence            579999999999754   5678999999999997

Part of a tellurite-reducing operon tehA and tehB

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.44  E-value=3.1e-13  Score=115.21  Aligned_cols=79  Identities=27%  Similarity=0.283  Sum_probs=69.5

Q ss_pred             CCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC------------CCceEEEecCCCCCCCCCceeeEeeccccc-cc
Q psy10644        118 GRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA------------LNERVTSCDMTRTPLKPYSVDVAVFCLSLM-GT  180 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh-~~  180 (196)
                      ++.+|||||||+|.++..+    .+.+|+++|+++            .++.++.+|++++++++++||+|+++.++| ..
T Consensus       113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~  192 (340)
T PLN02490        113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWP  192 (340)
T ss_pred             CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhCC
Confidence            4679999999999987766    346899999987            367889999999999999999999999995 55


Q ss_pred             CHHHHHHHHHHhccCC
Q psy10644        181 DLAACIKEANRILKLG  196 (196)
Q Consensus       181 d~~~~l~e~~rvLkpg  196 (196)
                      +...+|++++|+||||
T Consensus       193 d~~~~L~e~~rvLkPG  208 (340)
T PLN02490        193 DPQRGIKEAYRVLKIG  208 (340)
T ss_pred             CHHHHHHHHHHhcCCC
Confidence            9999999999999997

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.44  E-value=2.8e-13  Score=97.01  Aligned_cols=78  Identities=21%  Similarity=0.283  Sum_probs=63.6

Q ss_pred             CCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC----------------CCceEEEecC-CCCCCCCCceeeEeecc-
Q psy10644        118 GRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA----------------LNERVTSCDM-TRTPLKPYSVDVAVFCL-  175 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~----------------~~~~~~~~d~-~~lp~~~~sfD~Vi~~~-  175 (196)
                      ++.+|||||||+|.++..+    .+.+|+|+|+++                .++.++.+|+ ..... .+.||+|++.. 
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~~   79 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDF-LEPFDLVICSGF   79 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT-SSCEEEEEECSG
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCccc-CCCCCEEEECCC
Confidence            3679999999999998777    567999999998                5889999999 33333 35699999999 


Q ss_pred             ccc-c---cCHHHHHHHHHHhccCC
Q psy10644        176 SLM-G---TDLAACIKEANRILKLG  196 (196)
Q Consensus       176 ~lh-~---~d~~~~l~e~~rvLkpg  196 (196)
                      ++| .   .+...+++++++.|+||
T Consensus        80 ~~~~~~~~~~~~~~l~~~~~~L~pg  104 (112)
T PF12847_consen   80 TLHFLLPLDERRRVLERIRRLLKPG  104 (112)
T ss_dssp             SGGGCCHHHHHHHHHHHHHHHEEEE
T ss_pred             ccccccchhHHHHHHHHHHHhcCCC
Confidence            443 2   35788999999999996

...

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.43  E-value=1.1e-13  Score=97.99  Aligned_cols=75  Identities=27%  Similarity=0.445  Sum_probs=61.1

Q ss_pred             EEEEcCCCchhHhhc--c---C--CeEEEEeCCC--------------CCceEEEecCCCCCCCCCceeeEeeccc-ccc
Q psy10644        122 IADLGCGEAKLAAEL--T---Q--HKVHSLDLVA--------------LNERVTSCDMTRTPLKPYSVDVAVFCLS-LMG  179 (196)
Q Consensus       122 ILDlGCG~G~~a~~l--~---~--~~v~giDls~--------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~-lh~  179 (196)
                      |||+|||+|..+..+  .   +  .+++|+|+|+              .++++.++|+.+++..+++||+|++... +|+
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~   80 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH   80 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence            799999999998888  2   2  6999999998              3779999999999988899999999554 743


Q ss_pred             c---CHHHHHHHHHHhccCC
Q psy10644        180 T---DLAACIKEANRILKLG  196 (196)
Q Consensus       180 ~---d~~~~l~e~~rvLkpg  196 (196)
                      .   +...+++++.++||||
T Consensus        81 ~~~~~~~~ll~~~~~~l~pg  100 (101)
T PF13649_consen   81 LSPEELEALLRRIARLLRPG  100 (101)
T ss_dssp             SSHHHHHHHHHHHHHTEEEE
T ss_pred             CCHHHHHHHHHHHHHHhCCC
Confidence            4   5788999999999986

>TIGR00452 methyltransferase, putative

Probab=99.43  E-value=5.9e-13  Score=112.53  Aligned_cols=81  Identities=14%  Similarity=0.142  Sum_probs=66.4

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc--cC-CeEEEEeCCC----------------CCceEEEecCCCCCCCCCceeeEeecc
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL--TQ-HKVHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAVFCL  175 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l--~~-~~v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~  175 (196)
                      ...++.+|||||||+|.++..+  .+ ..|+|+|+|+                .++.+..++++++|.. .+||+|++..
T Consensus       118 ~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~g  196 (314)
T TIGR00452       118 SPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAFDTVFSMG  196 (314)
T ss_pred             CCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CCcCEEEEcc
Confidence            3445789999999999987776  33 3799999988                2356777788888754 4899999999


Q ss_pred             cc-cccCHHHHHHHHHHhccCC
Q psy10644        176 SL-MGTDLAACIKEANRILKLG  196 (196)
Q Consensus       176 ~l-h~~d~~~~l~e~~rvLkpg  196 (196)
                      +| |..++..+|++++|+||||
T Consensus       197 vL~H~~dp~~~L~el~r~LkpG  218 (314)
T TIGR00452       197 VLYHRKSPLEHLKQLKHQLVIK  218 (314)
T ss_pred             hhhccCCHHHHHHHHHHhcCCC
Confidence            99 5559999999999999997

Known examples to date are restricted to the proteobacteria.

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.42  E-value=2.4e-13  Score=95.64  Aligned_cols=74  Identities=27%  Similarity=0.379  Sum_probs=46.4

Q ss_pred             EEEcCCCchhHhhc----cCCeEEEEeCCCC---------------CceEEEecCCCCC--CCCCceeeEeeccccccc-
Q psy10644        123 ADLGCGEAKLAAEL----TQHKVHSLDLVAL---------------NERVTSCDMTRTP--LKPYSVDVAVFCLSLMGT-  180 (196)
Q Consensus       123 LDlGCG~G~~a~~l----~~~~v~giDls~~---------------~~~~~~~d~~~lp--~~~~sfD~Vi~~~~lh~~-  180 (196)
                      ||||||+|.++..+    +..+++|+|+|+.               +......+..+..  ...++||+|+++.++|+. 
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~   80 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE   80 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence            79999999998888    3569999999992               1122333322221  123699999999999766 


Q ss_pred             CHHHHHHHHHHhccCC
Q psy10644        181 DLAACIKEANRILKLG  196 (196)
Q Consensus       181 d~~~~l~e~~rvLkpg  196 (196)
                      ++..+++.++++||||
T Consensus        81 ~~~~~l~~~~~~L~pg   96 (99)
T PF08242_consen   81 DIEAVLRNIYRLLKPG   96 (99)
T ss_dssp             -HHHHHHHHTTT-TSS
T ss_pred             hHHHHHHHHHHHcCCC
Confidence            9999999999999997

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PRK06922 hypothetical protein; Provisional

Probab=99.42  E-value=1.5e-12  Score=118.15  Aligned_cols=78  Identities=21%  Similarity=0.279  Sum_probs=66.0

Q ss_pred             CCEEEEEcCCCchhHhhc----cCCeEEEEeCCC--------------CCceEEEecCCCCC--CCCCceeeEeeccccc
Q psy10644        119 RLVIADLGCGEAKLAAEL----TQHKVHSLDLVA--------------LNERVTSCDMTRTP--LKPYSVDVAVFCLSLM  178 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l----~~~~v~giDls~--------------~~~~~~~~d~~~lp--~~~~sfD~Vi~~~~lh  178 (196)
                      +.+|||+|||+|.++..+    ++.+|+|+|+|+              .++.++++|+.++|  +++++||+|+++.++|
T Consensus       419 g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH  498 (677)
T PRK06922        419 GDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILH  498 (677)
T ss_pred             CCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHH
Confidence            679999999999987666    467999999998              13567888988887  7889999999999886


Q ss_pred             cc--------------CHHHHHHHHHHhccCC
Q psy10644        179 GT--------------DLAACIKEANRILKLG  196 (196)
Q Consensus       179 ~~--------------d~~~~l~e~~rvLkpg  196 (196)
                      ..              +..++|++++|+||||
T Consensus       499 ~L~syIp~~g~~f~~edl~kiLreI~RVLKPG  530 (677)
T PRK06922        499 ELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPG  530 (677)
T ss_pred             hhhhhcccccccccHHHHHHHHHHHHHHcCCC
Confidence            31              5688999999999997

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.41  E-value=8.2e-13  Score=109.34  Aligned_cols=80  Identities=28%  Similarity=0.265  Sum_probs=68.2

Q ss_pred             CCCCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC---------------CCceEEEecCCCCCCCCCceeeEeeccc
Q psy10644        117 KGRLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDVAVFCLS  176 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~  176 (196)
                      .++.+|||||||+|..+..+     ...+|+++|+++               .++.+..+|++.+++++++||+|++..+
T Consensus        76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v  155 (272)
T PRK11873         76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNCV  155 (272)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcCc
Confidence            35789999999999865544     234799999988               3677888999999998899999999999


Q ss_pred             cccc-CHHHHHHHHHHhccCC
Q psy10644        177 LMGT-DLAACIKEANRILKLG  196 (196)
Q Consensus       177 lh~~-d~~~~l~e~~rvLkpg  196 (196)
                      +|+. +...++++++|+||||
T Consensus       156 ~~~~~d~~~~l~~~~r~LkpG  176 (272)
T PRK11873        156 INLSPDKERVFKEAFRVLKPG  176 (272)
T ss_pred             ccCCCCHHHHHHHHHHHcCCC
Confidence            9654 9999999999999997

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.40  E-value=2.1e-12  Score=103.44  Aligned_cols=80  Identities=14%  Similarity=0.188  Sum_probs=65.2

Q ss_pred             CCCCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC----CCceEEEecCCCCC--------CCCCceeeEeecccccc
Q psy10644        117 KGRLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA----LNERVTSCDMTRTP--------LKPYSVDVAVFCLSLMG  179 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~----~~~~~~~~d~~~lp--------~~~~sfD~Vi~~~~lh~  179 (196)
                      +++.+|||||||+|.++..+     ....|+|+|+++    +++.++++|+...+        +.+++||+|++..+.++
T Consensus        50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~~~  129 (209)
T PRK11188         50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMDPIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDMAPNM  129 (209)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccccCCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEecCCCCcc
Confidence            45779999999999998877     235899999997    57889999998753        67789999999877653


Q ss_pred             c-C-----------HHHHHHHHHHhccCC
Q psy10644        180 T-D-----------LAACIKEANRILKLG  196 (196)
Q Consensus       180 ~-d-----------~~~~l~e~~rvLkpg  196 (196)
                      . +           ...+|.+++++||||
T Consensus       130 ~g~~~~d~~~~~~~~~~~L~~~~~~LkpG  158 (209)
T PRK11188        130 SGTPAVDIPRAMYLVELALDMCRDVLAPG  158 (209)
T ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            3 2           146899999999997

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.39  E-value=1.4e-12  Score=108.29  Aligned_cols=85  Identities=21%  Similarity=0.351  Sum_probs=66.4

Q ss_pred             HHHHHHHhhcCCCCCEEEEEcCCCchhHhhc----c---CCeEEEEeCCC----------CCceEEEecCCCCCCCCCce
Q psy10644        106 IIIKSIQERESKGRLVIADLGCGEAKLAAEL----T---QHKVHSLDLVA----------LNERVTSCDMTRTPLKPYSV  168 (196)
Q Consensus       106 ~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l----~---~~~v~giDls~----------~~~~~~~~d~~~lp~~~~sf  168 (196)
                      .+.+.+.........+|||+|||+|.++..+    .   +..|+|+|+|+          .++.+.++|+.++|+++++|
T Consensus        73 ~i~~~l~~~l~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sf  152 (272)
T PRK11088         73 AVANLLAERLDEKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSL  152 (272)
T ss_pred             HHHHHHHHhcCCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCce
Confidence            3444454433334578999999999988776    1   23799999998          46789999999999999999


Q ss_pred             eeEeecccccccCHHHHHHHHHHhccCC
Q psy10644        169 DVAVFCLSLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       169 D~Vi~~~~lh~~d~~~~l~e~~rvLkpg  196 (196)
                      |+|++.++      ...++|++|+||||
T Consensus       153 D~I~~~~~------~~~~~e~~rvLkpg  174 (272)
T PRK11088        153 DAIIRIYA------PCKAEELARVVKPG  174 (272)
T ss_pred             eEEEEecC------CCCHHHHHhhccCC
Confidence            99998765      23468999999997

>PRK08317 hypothetical protein; Provisional

Probab=99.39  E-value=3.2e-12  Score=102.62  Aligned_cols=82  Identities=26%  Similarity=0.275  Sum_probs=70.4

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC--------------CCceEEEecCCCCCCCCCceeeEeecc
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA--------------LNERVTSCDMTRTPLKPYSVDVAVFCL  175 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~--------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~  175 (196)
                      ...++.+|||+|||+|.++..+     +..+|+|+|+++              .++.+..+|+..++++++.||+|++..
T Consensus        16 ~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~   95 (241)
T PRK08317         16 AVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRSDR   95 (241)
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEEec
Confidence            3345789999999999998777     246899999997              357788899988888889999999999


Q ss_pred             ccc-ccCHHHHHHHHHHhccCC
Q psy10644        176 SLM-GTDLAACIKEANRILKLG  196 (196)
Q Consensus       176 ~lh-~~d~~~~l~e~~rvLkpg  196 (196)
                      +++ ..++..++++++++||||
T Consensus        96 ~~~~~~~~~~~l~~~~~~L~~g  117 (241)
T PRK08317         96 VLQHLEDPARALAEIARVLRPG  117 (241)
T ss_pred             hhhccCCHHHHHHHHHHHhcCC
Confidence            995 559999999999999997

>KOG1270|consensus

Probab=99.38  E-value=5.5e-13  Score=108.28  Aligned_cols=75  Identities=21%  Similarity=0.236  Sum_probs=61.5

Q ss_pred             CCEEEEEcCCCchhHhhc--cCCeEEEEeCCCC---------------------CceEEEecCCCCCCCCCceeeEeecc
Q psy10644        119 RLVIADLGCGEAKLAAEL--TQHKVHSLDLVAL---------------------NERVTSCDMTRTPLKPYSVDVAVFCL  175 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l--~~~~v~giDls~~---------------------~~~~~~~d~~~lp~~~~sfD~Vi~~~  175 (196)
                      +++|||+|||+|.+++.|  .+..|+|+|+++.                     .+++...+++.+.   +.||+|+|..
T Consensus        90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcse  166 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVCSE  166 (282)
T ss_pred             CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceeeeHH
Confidence            478999999999999999  6789999999981                     2334444554432   3499999999


Q ss_pred             cc-cccCHHHHHHHHHHhccCC
Q psy10644        176 SL-MGTDLAACIKEANRILKLG  196 (196)
Q Consensus       176 ~l-h~~d~~~~l~e~~rvLkpg  196 (196)
                      ++ |..|+..++..+.+.||||
T Consensus       167 vleHV~dp~~~l~~l~~~lkP~  188 (282)
T KOG1270|consen  167 VLEHVKDPQEFLNCLSALLKPN  188 (282)
T ss_pred             HHHHHhCHHHHHHHHHHHhCCC
Confidence            99 6669999999999999997

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.38  E-value=3e-12  Score=104.80  Aligned_cols=78  Identities=17%  Similarity=0.230  Sum_probs=64.9

Q ss_pred             CCCCEEEEEcCCCchhHhhc------cCCeEEEEeCCC----------------CCceEEEecCCCCCCCCCceeeEeec
Q psy10644        117 KGRLVIADLGCGEAKLAAEL------TQHKVHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAVFC  174 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l------~~~~v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~  174 (196)
                      .++.+|||||||+|.++..+      ++.+|+|+|+|+                .++.++++|+..+|++  .+|+|+++
T Consensus        55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~~  132 (247)
T PRK15451         55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLN  132 (247)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEehh
Confidence            35789999999999987655      356999999998                2578899999888765  48999999


Q ss_pred             cccccc---CHHHHHHHHHHhccCC
Q psy10644        175 LSLMGT---DLAACIKEANRILKLG  196 (196)
Q Consensus       175 ~~lh~~---d~~~~l~e~~rvLkpg  196 (196)
                      .++|+.   +...++++++++||||
T Consensus       133 ~~l~~l~~~~~~~~l~~i~~~LkpG  157 (247)
T PRK15451        133 FTLQFLEPSERQALLDKIYQGLNPG  157 (247)
T ss_pred             hHHHhCCHHHHHHHHHHHHHhcCCC
Confidence            999755   3568999999999997

>TIGR00740 methyltransferase, putative

Probab=99.37  E-value=2.4e-12  Score=104.67  Aligned_cols=78  Identities=15%  Similarity=0.214  Sum_probs=65.1

Q ss_pred             CCCCEEEEEcCCCchhHhhc------cCCeEEEEeCCC----------------CCceEEEecCCCCCCCCCceeeEeec
Q psy10644        117 KGRLVIADLGCGEAKLAAEL------TQHKVHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAVFC  174 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l------~~~~v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~  174 (196)
                      .++.+|||||||+|.++..+      ++++|+|+|+|+                .++.++.+|+..++++  .+|+|++.
T Consensus        52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~  129 (239)
T TIGR00740        52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILN  129 (239)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeee
Confidence            34679999999999987655      356899999997                2468899999888875  48999999


Q ss_pred             cccccc---CHHHHHHHHHHhccCC
Q psy10644        175 LSLMGT---DLAACIKEANRILKLG  196 (196)
Q Consensus       175 ~~lh~~---d~~~~l~e~~rvLkpg  196 (196)
                      +++|+.   +...++++++|+||||
T Consensus       130 ~~l~~~~~~~~~~~l~~i~~~Lkpg  154 (239)
T TIGR00740       130 FTLQFLPPEDRIALLTKIYEGLNPN  154 (239)
T ss_pred             cchhhCCHHHHHHHHHHHHHhcCCC
Confidence            999654   5688999999999997

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PRK06202 hypothetical protein; Provisional

Probab=99.37  E-value=3e-12  Score=103.73  Aligned_cols=78  Identities=18%  Similarity=0.227  Sum_probs=63.9

Q ss_pred             CCCEEEEEcCCCchhHhhcc--------CCeEEEEeCCC------------CCceEEEecCCCCCCCCCceeeEeecccc
Q psy10644        118 GRLVIADLGCGEAKLAAELT--------QHKVHSLDLVA------------LNERVTSCDMTRTPLKPYSVDVAVFCLSL  177 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l~--------~~~v~giDls~------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l  177 (196)
                      ++.+|||||||+|.++..|.        +.+|+|+|+++            .++.+...+...++.++++||+|++++++
T Consensus        60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~l  139 (232)
T PRK06202         60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHFL  139 (232)
T ss_pred             CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCee
Confidence            46799999999999877762        24899999998            24667777777777778899999999999


Q ss_pred             ccc-C--HHHHHHHHHHhccC
Q psy10644        178 MGT-D--LAACIKEANRILKL  195 (196)
Q Consensus       178 h~~-d--~~~~l~e~~rvLkp  195 (196)
                      |+. +  ...++++++|++|.
T Consensus       140 hh~~d~~~~~~l~~~~r~~~~  160 (232)
T PRK06202        140 HHLDDAEVVRLLADSAALARR  160 (232)
T ss_pred             ecCChHHHHHHHHHHHHhcCe
Confidence            755 4  45799999999874

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=99.37  E-value=2.3e-12  Score=101.65  Aligned_cols=77  Identities=22%  Similarity=0.309  Sum_probs=65.5

Q ss_pred             CCEEEEEcCCCchhHhhc---cCCeEEEEeCCC--------CCceEEEecCCC-C-CCCCCceeeEeeccccccc-CHHH
Q psy10644        119 RLVIADLGCGEAKLAAEL---TQHKVHSLDLVA--------LNERVTSCDMTR-T-PLKPYSVDVAVFCLSLMGT-DLAA  184 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l---~~~~v~giDls~--------~~~~~~~~d~~~-l-p~~~~sfD~Vi~~~~lh~~-d~~~  184 (196)
                      +.+|||||||+|.++..+   .+..++|+|+++        .++.++.+|+.. + ++++++||+|++..++|+. ++..
T Consensus        14 ~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d~~~   93 (194)
T TIGR02081        14 GSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATRNPEE   93 (194)
T ss_pred             CCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCcCHHH
Confidence            679999999999998877   345789999997        367888899865 4 4778899999999999655 9999


Q ss_pred             HHHHHHHhccC
Q psy10644        185 CIKEANRILKL  195 (196)
Q Consensus       185 ~l~e~~rvLkp  195 (196)
                      +++++.|++++
T Consensus        94 ~l~e~~r~~~~  104 (194)
T TIGR02081        94 ILDEMLRVGRH  104 (194)
T ss_pred             HHHHHHHhCCe
Confidence            99999999875

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.36  E-value=4.3e-12  Score=101.89  Aligned_cols=99  Identities=15%  Similarity=0.077  Sum_probs=75.5

Q ss_pred             cCC-CChHHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCCC-------------------------
Q psy10644         98 QWP-INPVDIIIKSIQERESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVAL-------------------------  149 (196)
Q Consensus        98 ~w~-~~~~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~~-------------------------  149 (196)
                      .|. ..|...+.+++......++.+|||+|||.|..+..|  .|++|+|+|+|+.                         
T Consensus        13 ~w~~~~p~~~l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~   92 (213)
T TIGR03840        13 GFHQSEVNPLLVKHWPALGLPAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYR   92 (213)
T ss_pred             CCccCCCCHHHHHHHHhhCCCCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeee
Confidence            453 345556666665543234679999999999999999  6789999999982                         


Q ss_pred             --CceEEEecCCCCCCC-CCceeeEeeccccccc---CHHHHHHHHHHhccCC
Q psy10644        150 --NERVTSCDMTRTPLK-PYSVDVAVFCLSLMGT---DLAACIKEANRILKLG  196 (196)
Q Consensus       150 --~~~~~~~d~~~lp~~-~~sfD~Vi~~~~lh~~---d~~~~l~e~~rvLkpg  196 (196)
                        ++.+.++|+.+++.. .+.||.|+.+.++|+.   ....+++.+.++||||
T Consensus        93 ~~~v~~~~~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpg  145 (213)
T TIGR03840        93 AGNIEIFCGDFFALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPG  145 (213)
T ss_pred             cCceEEEEccCCCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCC
Confidence              256788998877643 4579999998887543   5677999999999997

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.35  E-value=2.2e-11  Score=98.02  Aligned_cols=79  Identities=28%  Similarity=0.403  Sum_probs=68.1

Q ss_pred             CCCEEEEEcCCCchhHhhc---c--CCeEEEEeCCC----------------CCceEEEecCCCCCCCCCceeeEeeccc
Q psy10644        118 GRLVIADLGCGEAKLAAEL---T--QHKVHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAVFCLS  176 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l---~--~~~v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~  176 (196)
                      ++.+|||+|||+|.++..+   .  ..+|+++|+++                .++.++.+|+..++++.+.||+|++..+
T Consensus        51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~  130 (239)
T PRK00216         51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFG  130 (239)
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecc
Confidence            4689999999999998777   2  37999999987                2467888898888887889999999999


Q ss_pred             cccc-CHHHHHHHHHHhccCC
Q psy10644        177 LMGT-DLAACIKEANRILKLG  196 (196)
Q Consensus       177 lh~~-d~~~~l~e~~rvLkpg  196 (196)
                      +|.. ++..++.++.++|+||
T Consensus       131 l~~~~~~~~~l~~~~~~L~~g  151 (239)
T PRK00216        131 LRNVPDIDKALREMYRVLKPG  151 (239)
T ss_pred             cccCCCHHHHHHHHHHhccCC
Confidence            9655 9999999999999987

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.35  E-value=2.9e-12  Score=106.43  Aligned_cols=81  Identities=23%  Similarity=0.206  Sum_probs=60.2

Q ss_pred             hhcCCCCCEEEEEcCCCchhHhhc---cCCeEEEEeCCC----------------CCceEEEecCCCCCCCCCceeeEee
Q psy10644        113 ERESKGRLVIADLGCGEAKLAAEL---TQHKVHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAVF  173 (196)
Q Consensus       113 ~~~~~~~~~ILDlGCG~G~~a~~l---~~~~v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~  173 (196)
                      +...+++.+|||||||.|.++..+   .+++|+|+.+|+                ..+.+..+|..+++.   +||.|++
T Consensus        57 ~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~---~fD~IvS  133 (273)
T PF02353_consen   57 KLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG---KFDRIVS  133 (273)
T ss_dssp             TTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------S-SEEEE
T ss_pred             HhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC---CCCEEEE
Confidence            334566899999999999999998   378999999998                357788888877654   9999999


Q ss_pred             cccc-cc--cCHHHHHHHHHHhccCC
Q psy10644        174 CLSL-MG--TDLAACIKEANRILKLG  196 (196)
Q Consensus       174 ~~~l-h~--~d~~~~l~e~~rvLkpg  196 (196)
                      ..++ |.  .++..+|+++.++||||
T Consensus       134 i~~~Ehvg~~~~~~~f~~~~~~Lkpg  159 (273)
T PF02353_consen  134 IEMFEHVGRKNYPAFFRKISRLLKPG  159 (273)
T ss_dssp             ESEGGGTCGGGHHHHHHHHHHHSETT
T ss_pred             EechhhcChhHHHHHHHHHHHhcCCC
Confidence            9999 75  38999999999999997

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>KOG3010|consensus

Probab=99.35  E-value=1.6e-12  Score=104.41  Aligned_cols=95  Identities=24%  Similarity=0.250  Sum_probs=67.0

Q ss_pred             CCChHHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhccC--CeEEEEeCCC---------CCce-------EEEecCCCC
Q psy10644        100 PINPVDIIIKSIQERESKGRLVIADLGCGEAKLAAELTQ--HKVHSLDLVA---------LNER-------VTSCDMTRT  161 (196)
Q Consensus       100 ~~~~~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l~~--~~v~giDls~---------~~~~-------~~~~d~~~l  161 (196)
                      |..|.+.+-... ..... ...++|+|||+|..++.+..  .+|+|+|+|+         .++.       +...++..|
T Consensus        17 P~YPtdw~~~ia-~~~~~-h~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L   94 (261)
T KOG3010|consen   17 PSYPTDWFKKIA-SRTEG-HRLAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDL   94 (261)
T ss_pred             CCCcHHHHHHHH-hhCCC-cceEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCcccccCCccccccccccc
Confidence            445544444333 33321 22789999999987777744  3899999998         1222       222223333


Q ss_pred             CCCCCceeeEeecccccccCHHHHHHHHHHhccCC
Q psy10644        162 PLKPYSVDVAVFCLSLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       162 p~~~~sfD~Vi~~~~lh~~d~~~~l~e~~rvLkpg  196 (196)
                      --.++++|+|++..++|+.|.+.++++++|+||+.
T Consensus        95 ~g~e~SVDlI~~Aqa~HWFdle~fy~~~~rvLRk~  129 (261)
T KOG3010|consen   95 LGGEESVDLITAAQAVHWFDLERFYKEAYRVLRKD  129 (261)
T ss_pred             cCCCcceeeehhhhhHHhhchHHHHHHHHHHcCCC
Confidence            33489999999999999999999999999999974

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.34  E-value=3.8e-12  Score=106.41  Aligned_cols=77  Identities=25%  Similarity=0.303  Sum_probs=65.3

Q ss_pred             CCEEEEEcCCCchhHhhc--cCCeEEEEeCCC--------------CCceEEEecCCCCCCCCCceeeEeeccccccc--
Q psy10644        119 RLVIADLGCGEAKLAAEL--TQHKVHSLDLVA--------------LNERVTSCDMTRTPLKPYSVDVAVFCLSLMGT--  180 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l--~~~~v~giDls~--------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~~--  180 (196)
                      +.+|||||||+|.++..+  .+.+|+|+|+|+              .++.+...|+...++ +++||+|++..++|+.  
T Consensus       121 ~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l~~  199 (287)
T PRK12335        121 PGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMFLNR  199 (287)
T ss_pred             CCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhhCCH
Confidence            459999999999999888  567999999998              256677788876655 6789999999999754  


Q ss_pred             -CHHHHHHHHHHhccCC
Q psy10644        181 -DLAACIKEANRILKLG  196 (196)
Q Consensus       181 -d~~~~l~e~~rvLkpg  196 (196)
                       +...+++++.++||||
T Consensus       200 ~~~~~~l~~~~~~Lkpg  216 (287)
T PRK12335        200 ERIPAIIKNMQEHTNPG  216 (287)
T ss_pred             HHHHHHHHHHHHhcCCC
Confidence             5778999999999997

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.33  E-value=3.6e-12  Score=102.41  Aligned_cols=75  Identities=20%  Similarity=0.271  Sum_probs=63.6

Q ss_pred             EEEEEcCCCchhHhhc----cCCeEEEEeCCC----------------CCceEEEecCCCCCCCCCceeeEeecccccc-
Q psy10644        121 VIADLGCGEAKLAAEL----TQHKVHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAVFCLSLMG-  179 (196)
Q Consensus       121 ~ILDlGCG~G~~a~~l----~~~~v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~-  179 (196)
                      +|||||||+|.++..+    .+.+|+|+|+|+                .++.++.+|+...|++ ++||+|++..++|+ 
T Consensus         2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~~   80 (224)
T smart00828        2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHHI   80 (224)
T ss_pred             eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHhC
Confidence            6999999999988777    356999999997                2468888888666664 58999999999954 


Q ss_pred             cCHHHHHHHHHHhccCC
Q psy10644        180 TDLAACIKEANRILKLG  196 (196)
Q Consensus       180 ~d~~~~l~e~~rvLkpg  196 (196)
                      .++..+|++++++||||
T Consensus        81 ~~~~~~l~~~~~~Lkpg   97 (224)
T smart00828       81 KDKMDLFSNISRHLKDG   97 (224)
T ss_pred             CCHHHHHHHHHHHcCCC
Confidence            49999999999999997

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.30  E-value=4.7e-11  Score=95.14  Aligned_cols=79  Identities=29%  Similarity=0.482  Sum_probs=68.3

Q ss_pred             CCCEEEEEcCCCchhHhhc---cC--CeEEEEeCCC-------------CCceEEEecCCCCCCCCCceeeEeecccccc
Q psy10644        118 GRLVIADLGCGEAKLAAEL---TQ--HKVHSLDLVA-------------LNERVTSCDMTRTPLKPYSVDVAVFCLSLMG  179 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l---~~--~~v~giDls~-------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~  179 (196)
                      ++.+|||+|||+|.++..+   .+  .+++++|+++             .++.+..+|+.+++++++.||+|++..++|.
T Consensus        39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~~  118 (223)
T TIGR01934        39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGLRN  118 (223)
T ss_pred             CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeeeeCC
Confidence            4789999999999998777   12  4899999987             2578889999888888889999999999965


Q ss_pred             c-CHHHHHHHHHHhccCC
Q psy10644        180 T-DLAACIKEANRILKLG  196 (196)
Q Consensus       180 ~-d~~~~l~e~~rvLkpg  196 (196)
                      . ++..+++++.++|+||
T Consensus       119 ~~~~~~~l~~~~~~L~~g  136 (223)
T TIGR01934       119 VTDIQKALREMYRVLKPG  136 (223)
T ss_pred             cccHHHHHHHHHHHcCCC
Confidence            5 9999999999999997

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.29  E-value=2.1e-11  Score=98.18  Aligned_cols=99  Identities=14%  Similarity=0.077  Sum_probs=76.3

Q ss_pred             cCC-CChHHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCCC-------------------------
Q psy10644         98 QWP-INPVDIIIKSIQERESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVAL-------------------------  149 (196)
Q Consensus        98 ~w~-~~~~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~~-------------------------  149 (196)
                      .|. ..+...+.+++......++.+|||+|||.|..+..|  .|++|+|+|+|+.                         
T Consensus        16 ~~~~~~p~~~L~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~   95 (218)
T PRK13255         16 GFHQEEVNPLLQKYWPALALPAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQ   95 (218)
T ss_pred             CCCCCCCCHHHHHHHHhhCCCCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHcCCCccccccccccccc
Confidence            453 556666777665443344679999999999999999  6889999999981                         


Q ss_pred             --CceEEEecCCCCCCC-CCceeeEeeccccccc---CHHHHHHHHHHhccCC
Q psy10644        150 --NERVTSCDMTRTPLK-PYSVDVAVFCLSLMGT---DLAACIKEANRILKLG  196 (196)
Q Consensus       150 --~~~~~~~d~~~lp~~-~~sfD~Vi~~~~lh~~---d~~~~l~e~~rvLkpg  196 (196)
                        ++.+.++|+.+++.. .+.||+|+...++|..   ....++..+.++||||
T Consensus        96 ~~~v~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pg  148 (218)
T PRK13255         96 AGEITIYCGDFFALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAG  148 (218)
T ss_pred             cCceEEEECcccCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCC
Confidence              245678888776533 2589999998888543   5678999999999997

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.29  E-value=1.1e-11  Score=97.69  Aligned_cols=74  Identities=20%  Similarity=0.146  Sum_probs=63.4

Q ss_pred             CCEEEEEcCCCchhHhhc----cCCeEEEEeCCC---------------CCceEEEecCCCCCCCCCceeeEeecccccc
Q psy10644        119 RLVIADLGCGEAKLAAEL----TQHKVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDVAVFCLSLMG  179 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l----~~~~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~  179 (196)
                      +.+|||||||+|..+..+    .+.+|+++|+++               .++.++.+|+.+++. +++||+|++..   .
T Consensus        46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~---~  121 (187)
T PRK00107         46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRA---V  121 (187)
T ss_pred             CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEcc---c
Confidence            789999999999987766    467999999998               358899999988776 77999999864   2


Q ss_pred             cCHHHHHHHHHHhccCC
Q psy10644        180 TDLAACIKEANRILKLG  196 (196)
Q Consensus       180 ~d~~~~l~e~~rvLkpg  196 (196)
                      .++..++++++++||||
T Consensus       122 ~~~~~~l~~~~~~LkpG  138 (187)
T PRK00107        122 ASLSDLVELCLPLLKPG  138 (187)
T ss_pred             cCHHHHHHHHHHhcCCC
Confidence            47889999999999997

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.29  E-value=1.2e-11  Score=110.03  Aligned_cols=90  Identities=23%  Similarity=0.290  Sum_probs=71.9

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC-------------CCceEEEecCC--CCCCCCC
Q psy10644        104 VDIIIKSIQERESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA-------------LNERVTSCDMT--RTPLKPY  166 (196)
Q Consensus       104 ~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~-------------~~~~~~~~d~~--~lp~~~~  166 (196)
                      ...+++.+   ...++.+|||||||+|.++..|  ...+|+|+|+++             .++.++++|+.  .++++++
T Consensus        26 ~~~il~~l---~~~~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~  102 (475)
T PLN02336         26 RPEILSLL---PPYEGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDG  102 (475)
T ss_pred             hhHHHhhc---CccCCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCC
Confidence            34444444   2233669999999999999988  345999999998             25778889985  4678889


Q ss_pred             ceeeEeeccccccc-C--HHHHHHHHHHhccCC
Q psy10644        167 SVDVAVFCLSLMGT-D--LAACIKEANRILKLG  196 (196)
Q Consensus       167 sfD~Vi~~~~lh~~-d--~~~~l~e~~rvLkpg  196 (196)
                      +||+|++..++|+. +  ...++++++|+||||
T Consensus       103 ~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~g  135 (475)
T PLN02336        103 SVDLIFSNWLLMYLSDKEVENLAERMVKWLKVG  135 (475)
T ss_pred             CEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCC
Confidence            99999999999654 3  678999999999997

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.29  E-value=1.5e-11  Score=101.93  Aligned_cols=82  Identities=22%  Similarity=0.170  Sum_probs=68.2

Q ss_pred             HhhcCCCCCEEEEEcCCCchhHhhc---cCCeEEEEeCCC----------------CCceEEEecCCCCCCCCCceeeEe
Q psy10644        112 QERESKGRLVIADLGCGEAKLAAEL---TQHKVHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAV  172 (196)
Q Consensus       112 ~~~~~~~~~~ILDlGCG~G~~a~~l---~~~~v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi  172 (196)
                      .++...++++|||||||.|.++..+   -+.+|+|+++|+                .+++++..|...+.   +.||-|+
T Consensus        66 ~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~---e~fDrIv  142 (283)
T COG2230          66 EKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE---EPFDRIV  142 (283)
T ss_pred             HhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc---cccceee
Confidence            3445567999999999999998888   367999999998                26777777776654   3499999


Q ss_pred             ecccc-ccc--CHHHHHHHHHHhccCC
Q psy10644        173 FCLSL-MGT--DLAACIKEANRILKLG  196 (196)
Q Consensus       173 ~~~~l-h~~--d~~~~l~e~~rvLkpg  196 (196)
                      +..++ |..  ++..+|+.++++|+||
T Consensus       143 SvgmfEhvg~~~~~~ff~~~~~~L~~~  169 (283)
T COG2230         143 SVGMFEHVGKENYDDFFKKVYALLKPG  169 (283)
T ss_pred             ehhhHHHhCcccHHHHHHHHHhhcCCC
Confidence            99999 643  7999999999999997

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.28  E-value=1.8e-11  Score=98.21  Aligned_cols=88  Identities=19%  Similarity=0.215  Sum_probs=68.3

Q ss_pred             HHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC----------------CCceEEEecCCCCCCCCC
Q psy10644        105 DIIIKSIQERESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA----------------LNERVTSCDMTRTPLKPY  166 (196)
Q Consensus       105 ~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~----------------~~~~~~~~d~~~lp~~~~  166 (196)
                      ..+++++.. ...++.+|||+|||+|.++..+  .+.+|+|+|+++                .++.+.++|+..++   +
T Consensus        43 ~~~~~~l~~-~~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~  118 (219)
T TIGR02021        43 RKLLDWLPK-DPLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---G  118 (219)
T ss_pred             HHHHHHHhc-CCCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC---C
Confidence            334445532 1234789999999999999888  456999999998                15778888887765   7


Q ss_pred             ceeeEeecccc-ccc--CHHHHHHHHHHhccCC
Q psy10644        167 SVDVAVFCLSL-MGT--DLAACIKEANRILKLG  196 (196)
Q Consensus       167 sfD~Vi~~~~l-h~~--d~~~~l~e~~rvLkpg  196 (196)
                      +||+|++..++ |..  +...+++++.++++++
T Consensus       119 ~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~  151 (219)
T TIGR02021       119 EFDIVVCMDVLIHYPASDMAKALGHLASLTKER  151 (219)
T ss_pred             CcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCC
Confidence            89999999998 443  5778999999998874

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.27  E-value=8.9e-12  Score=99.18  Aligned_cols=79  Identities=15%  Similarity=0.127  Sum_probs=64.7

Q ss_pred             CCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC---------------CCceEEEecC-CCCC--CCCCceeeEeecc
Q psy10644        118 GRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA---------------LNERVTSCDM-TRTP--LKPYSVDVAVFCL  175 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~---------------~~~~~~~~d~-~~lp--~~~~sfD~Vi~~~  175 (196)
                      ++.+|||||||+|.++..+    ++.+|+|+|+++               .++.++++|+ +.++  +++++||+|++.+
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~  119 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF  119 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence            4679999999999988777    346899999998               3678999998 7776  7788999999876


Q ss_pred             ccccc---------CHHHHHHHHHHhccCC
Q psy10644        176 SLMGT---------DLAACIKEANRILKLG  196 (196)
Q Consensus       176 ~lh~~---------d~~~~l~e~~rvLkpg  196 (196)
                      ...+.         ....++++++++||||
T Consensus       120 ~~p~~~~~~~~~~~~~~~~l~~i~~~Lkpg  149 (202)
T PRK00121        120 PDPWPKKRHHKRRLVQPEFLALYARKLKPG  149 (202)
T ss_pred             CCCCCCccccccccCCHHHHHHHHHHcCCC
Confidence            54221         2578999999999997

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.27  E-value=2.6e-11  Score=95.05  Aligned_cols=74  Identities=19%  Similarity=0.190  Sum_probs=60.8

Q ss_pred             CCEEEEEcCCCchhHhhc----cCCeEEEEeCCC---------------CCceEEEecCCCCCCCCCceeeEeecccccc
Q psy10644        119 RLVIADLGCGEAKLAAEL----TQHKVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDVAVFCLSLMG  179 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l----~~~~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~  179 (196)
                      +.+|||||||+|.++..+    ...+|+++|.++               .++.++.+|+++++ .+++||+|++.. +  
T Consensus        43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-~--  118 (181)
T TIGR00138        43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-L--  118 (181)
T ss_pred             CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh-h--
Confidence            679999999999887766    346899999998               36788999998874 367999998865 3  


Q ss_pred             cCHHHHHHHHHHhccCC
Q psy10644        180 TDLAACIKEANRILKLG  196 (196)
Q Consensus       180 ~d~~~~l~e~~rvLkpg  196 (196)
                      .+...+++.++++||||
T Consensus       119 ~~~~~~~~~~~~~Lkpg  135 (181)
T TIGR00138       119 ASLNVLLELTLNLLKVG  135 (181)
T ss_pred             hCHHHHHHHHHHhcCCC
Confidence            35677889999999997

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.26  E-value=5.8e-12  Score=104.26  Aligned_cols=79  Identities=19%  Similarity=0.173  Sum_probs=63.9

Q ss_pred             CCCEEEEEcCCCch----hHhhc----c-----CCeEEEEeCCC-------C----------------------------
Q psy10644        118 GRLVIADLGCGEAK----LAAEL----T-----QHKVHSLDLVA-------L----------------------------  149 (196)
Q Consensus       118 ~~~~ILDlGCG~G~----~a~~l----~-----~~~v~giDls~-------~----------------------------  149 (196)
                      ++.+|+|+|||+|.    ++..+    .     +.+|+|+|+|+       .                            
T Consensus        99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~  178 (264)
T smart00138       99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR  178 (264)
T ss_pred             CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence            45799999999996    33322    2     35899999998       0                            


Q ss_pred             -------CceEEEecCCCCCCCCCceeeEeeccccccc---CHHHHHHHHHHhccCC
Q psy10644        150 -------NERVTSCDMTRTPLKPYSVDVAVFCLSLMGT---DLAACIKEANRILKLG  196 (196)
Q Consensus       150 -------~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~~---d~~~~l~e~~rvLkpg  196 (196)
                             ++.|.++|+...+++.+.||+|+|..+||+.   +..+++++++++||||
T Consensus       179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pG  235 (264)
T smart00138      179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPG  235 (264)
T ss_pred             EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCC
Confidence                   4678889998887778899999999999654   4557999999999997

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.26  E-value=2.8e-11  Score=95.41  Aligned_cols=77  Identities=25%  Similarity=0.268  Sum_probs=62.6

Q ss_pred             CCEEEEEcCCCchhHhhc--cCCeEEEEeCCC--------------CCceEEEecCCCCCCCCCceeeEeeccccccc--
Q psy10644        119 RLVIADLGCGEAKLAAEL--TQHKVHSLDLVA--------------LNERVTSCDMTRTPLKPYSVDVAVFCLSLMGT--  180 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l--~~~~v~giDls~--------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~~--  180 (196)
                      ..++||||||.|+.+.+|  .|..|+++|.|+              ..+...+.|+....++ +.||+|++..++|+.  
T Consensus        31 ~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~v~~fL~~  109 (192)
T PF03848_consen   31 PGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTVVFMFLQR  109 (192)
T ss_dssp             SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEESSGGGS-G
T ss_pred             CCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcccc-CCcCEEEEEEEeccCCH
Confidence            679999999999999999  788999999999              3577889999887775 689999998888544  


Q ss_pred             -CHHHHHHHHHHhccCC
Q psy10644        181 -DLAACIKEANRILKLG  196 (196)
Q Consensus       181 -d~~~~l~e~~rvLkpg  196 (196)
                       ..+..++.+...|+||
T Consensus       110 ~~~~~i~~~m~~~~~pG  126 (192)
T PF03848_consen  110 ELRPQIIENMKAATKPG  126 (192)
T ss_dssp             GGHHHHHHHHHHTEEEE
T ss_pred             HHHHHHHHHHHhhcCCc
Confidence             5778899999999986

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.22  E-value=5e-11  Score=103.54  Aligned_cols=79  Identities=20%  Similarity=0.169  Sum_probs=63.7

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc---cCCeEEEEeCCC------------CCceEEEecCCCCCCCCCceeeEeecccccc
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL---TQHKVHSLDLVA------------LNERVTSCDMTRTPLKPYSVDVAVFCLSLMG  179 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l---~~~~v~giDls~------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~  179 (196)
                      ...++.+|||||||+|.++..+   .+++|+|+|+|+            .++.+...|...+   +++||+|++..++++
T Consensus       164 ~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l---~~~fD~Ivs~~~~eh  240 (383)
T PRK11705        164 QLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDL---NGQFDRIVSVGMFEH  240 (383)
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhc---CCCCCEEEEeCchhh
Confidence            4456789999999999998877   367999999998            1355666676554   478999999999843


Q ss_pred             c---CHHHHHHHHHHhccCC
Q psy10644        180 T---DLAACIKEANRILKLG  196 (196)
Q Consensus       180 ~---d~~~~l~e~~rvLkpg  196 (196)
                      .   ++..++++++++||||
T Consensus       241 vg~~~~~~~l~~i~r~LkpG  260 (383)
T PRK11705        241 VGPKNYRTYFEVVRRCLKPD  260 (383)
T ss_pred             CChHHHHHHHHHHHHHcCCC
Confidence            2   6789999999999997

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.22  E-value=3e-11  Score=95.76  Aligned_cols=91  Identities=15%  Similarity=0.194  Sum_probs=75.8

Q ss_pred             ChHHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC----------CCceEEEecCCCCCCCCCc
Q psy10644        102 NPVDIIIKSIQERESKGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA----------LNERVTSCDMTRTPLKPYS  167 (196)
Q Consensus       102 ~~~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~----------~~~~~~~~d~~~lp~~~~s  167 (196)
                      .|...++..+   +......|.|||||+|..++.|    +...|+|+|-|+          +++.|..+|+..+. ++..
T Consensus        17 RPa~dLla~V---p~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~-p~~~   92 (257)
T COG4106          17 RPARDLLARV---PLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWK-PEQP   92 (257)
T ss_pred             CcHHHHHhhC---CccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcC-CCCc
Confidence            3455555554   4444578999999999988887    678999999998          68999999998875 4678


Q ss_pred             eeeEeeccccccc-CHHHHHHHHHHhccCC
Q psy10644        168 VDVAVFCLSLMGT-DLAACIKEANRILKLG  196 (196)
Q Consensus       168 fD~Vi~~~~lh~~-d~~~~l~e~~rvLkpg  196 (196)
                      +|+++++.+||+. |....|..+...|.||
T Consensus        93 ~dllfaNAvlqWlpdH~~ll~rL~~~L~Pg  122 (257)
T COG4106          93 TDLLFANAVLQWLPDHPELLPRLVSQLAPG  122 (257)
T ss_pred             cchhhhhhhhhhccccHHHHHHHHHhhCCC
Confidence            9999999999876 9999999999999987

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.21  E-value=5.9e-11  Score=98.78  Aligned_cols=88  Identities=14%  Similarity=0.138  Sum_probs=68.4

Q ss_pred             HHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc--cC-CeEEEEeCCC--------------CC--ceEEEecCCCCCCCC
Q psy10644        105 DIIIKSIQERESKGRLVIADLGCGEAKLAAEL--TQ-HKVHSLDLVA--------------LN--ERVTSCDMTRTPLKP  165 (196)
Q Consensus       105 ~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l--~~-~~v~giDls~--------------~~--~~~~~~d~~~lp~~~  165 (196)
                      +.+...+   ..-.+.+|||||||.|.++..+  .+ ..|+|+|.++              ..  +.+...-++.+|. .
T Consensus       105 ~rl~p~l---~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~  180 (315)
T PF08003_consen  105 DRLLPHL---PDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-L  180 (315)
T ss_pred             HHHHhhh---CCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-c
Confidence            4444444   2335789999999999999888  33 3799999998              12  2222245678887 7


Q ss_pred             CceeeEeecccc-cccCHHHHHHHHHHhccCC
Q psy10644        166 YSVDVAVFCLSL-MGTDLAACIKEANRILKLG  196 (196)
Q Consensus       166 ~sfD~Vi~~~~l-h~~d~~~~l~e~~rvLkpg  196 (196)
                      +.||+|+|..+| |-.++...|.+++..|+||
T Consensus       181 ~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~g  212 (315)
T PF08003_consen  181 GAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPG  212 (315)
T ss_pred             CCcCEEEEeeehhccCCHHHHHHHHHHhhCCC
Confidence            899999999999 7779999999999999987

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>KOG1541|consensus

Probab=99.20  E-value=5.4e-11  Score=94.57  Aligned_cols=79  Identities=22%  Similarity=0.300  Sum_probs=63.7

Q ss_pred             CCCEEEEEcCCCchhHhhc--cCCeEEEEeCCCC----------CceEEEecC-CCCCCCCCceeeEeeccccccc----
Q psy10644        118 GRLVIADLGCGEAKLAAEL--TQHKVHSLDLVAL----------NERVTSCDM-TRTPLKPYSVDVAVFCLSLMGT----  180 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~~----------~~~~~~~d~-~~lp~~~~sfD~Vi~~~~lh~~----  180 (196)
                      ...-|||||||+|..+..|  .++..+|+|+|+.          .-.++.+|+ +.+||++++||.||+..++.|.    
T Consensus        50 ~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISAvQWLcnA~  129 (270)
T KOG1541|consen   50 KSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISAVQWLCNAD  129 (270)
T ss_pred             CCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeeeeeeecccC
Confidence            4678999999999999999  6789999999991          236888998 6699999999999987776211    


Q ss_pred             ----CH----HHHHHHHHHhccCC
Q psy10644        181 ----DL----AACIKEANRILKLG  196 (196)
Q Consensus       181 ----d~----~~~l~e~~rvLkpg  196 (196)
                          ++    ..||..++.+|++|
T Consensus       130 ~s~~~P~~Rl~~FF~tLy~~l~rg  153 (270)
T KOG1541|consen  130 KSLHVPKKRLLRFFGTLYSCLKRG  153 (270)
T ss_pred             ccccChHHHHHHHhhhhhhhhccC
Confidence                22    34678888888875

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.19  E-value=1.6e-10  Score=92.89  Aligned_cols=87  Identities=21%  Similarity=0.166  Sum_probs=63.8

Q ss_pred             HHHHHHHhhcCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC----------------CCceEEEecCCCCCCCCCc
Q psy10644        106 IIIKSIQERESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA----------------LNERVTSCDMTRTPLKPYS  167 (196)
Q Consensus       106 ~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~----------------~~~~~~~~d~~~lp~~~~s  167 (196)
                      .+++.+......++.+|||||||+|.++..+  .+..|+|+|+++                .++.+..+|+   +..+++
T Consensus        51 ~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~---~~~~~~  127 (230)
T PRK07580         51 TVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDL---ESLLGR  127 (230)
T ss_pred             HHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCc---hhccCC
Confidence            3444554322234679999999999998888  456899999997                1466777774   444688


Q ss_pred             eeeEeecccc-ccc--CHHHHHHHHHHhccC
Q psy10644        168 VDVAVFCLSL-MGT--DLAACIKEANRILKL  195 (196)
Q Consensus       168 fD~Vi~~~~l-h~~--d~~~~l~e~~rvLkp  195 (196)
                      ||+|++..++ |+.  +...+++++.+++++
T Consensus       128 fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~  158 (230)
T PRK07580        128 FDTVVCLDVLIHYPQEDAARMLAHLASLTRG  158 (230)
T ss_pred             cCEEEEcchhhcCCHHHHHHHHHHHHhhcCC
Confidence            9999999999 544  566788888887654

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.18  E-value=2.2e-10  Score=83.00  Aligned_cols=78  Identities=18%  Similarity=0.109  Sum_probs=60.2

Q ss_pred             CCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC---------------CCceEEEecCCC-CCCCCCceeeEeeccc
Q psy10644        117 KGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA---------------LNERVTSCDMTR-TPLKPYSVDVAVFCLS  176 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~---------------~~~~~~~~d~~~-lp~~~~sfD~Vi~~~~  176 (196)
                      .++.+|||+|||+|.++..+    ++.+|+++|+++               .++.++..|+.. ++...++||+|++...
T Consensus        18 ~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~   97 (124)
T TIGR02469        18 RPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGS   97 (124)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCc
Confidence            34679999999999998877    346999999998               256677777654 3333468999998765


Q ss_pred             ccccCHHHHHHHHHHhccCC
Q psy10644        177 LMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       177 lh~~d~~~~l~e~~rvLkpg  196 (196)
                      .+  ....++++++++||||
T Consensus        98 ~~--~~~~~l~~~~~~Lk~g  115 (124)
T TIGR02469        98 GG--LLQEILEAIWRRLRPG  115 (124)
T ss_pred             ch--hHHHHHHHHHHHcCCC
Confidence            43  3468999999999997

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.17  E-value=4.6e-11  Score=94.45  Aligned_cols=78  Identities=15%  Similarity=0.242  Sum_probs=62.8

Q ss_pred             CCEEEEEcCCCchhHhhc----cCCeEEEEeCCC---------------CCceEEEecCCCCC---CCCCceeeEeeccc
Q psy10644        119 RLVIADLGCGEAKLAAEL----TQHKVHSLDLVA---------------LNERVTSCDMTRTP---LKPYSVDVAVFCLS  176 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l----~~~~v~giDls~---------------~~~~~~~~d~~~lp---~~~~sfD~Vi~~~~  176 (196)
                      ..+|||||||+|.++..+    +...|+|+|+++               .++.++.+|+..++   ++++++|.|++.+.
T Consensus        17 ~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~p   96 (194)
T TIGR00091        17 APLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNFP   96 (194)
T ss_pred             CceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEECC
Confidence            568999999999998777    456999999998               37889999987643   55679999998876


Q ss_pred             cccc-C--------HHHHHHHHHHhccCC
Q psy10644        177 LMGT-D--------LAACIKEANRILKLG  196 (196)
Q Consensus       177 lh~~-d--------~~~~l~e~~rvLkpg  196 (196)
                      .++. .        ...++++++|+||||
T Consensus        97 dpw~k~~h~~~r~~~~~~l~~~~r~Lkpg  125 (194)
T TIGR00091        97 DPWPKKRHNKRRITQPHFLKEYANVLKKG  125 (194)
T ss_pred             CcCCCCCccccccCCHHHHHHHHHHhCCC
Confidence            5332 1        257999999999997

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.14  E-value=3.4e-10  Score=91.46  Aligned_cols=80  Identities=20%  Similarity=0.252  Sum_probs=64.7

Q ss_pred             CCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC--------------CCceEEEecCCCCC-CCCCceeeEeeccccc-
Q psy10644        117 KGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA--------------LNERVTSCDMTRTP-LKPYSVDVAVFCLSLM-  178 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~--------------~~~~~~~~d~~~lp-~~~~sfD~Vi~~~~lh-  178 (196)
                      .++.+|||||||+|.++..+  .+.+|+++|+++              ..+.+..+++..++ ..++.||+|++..+++ 
T Consensus        47 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~  126 (233)
T PRK05134         47 LFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEH  126 (233)
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhc
Confidence            34789999999999998877  456899999997              13456667766654 3457999999999995 


Q ss_pred             ccCHHHHHHHHHHhccCC
Q psy10644        179 GTDLAACIKEANRILKLG  196 (196)
Q Consensus       179 ~~d~~~~l~e~~rvLkpg  196 (196)
                      ..++..+++.+.++|+||
T Consensus       127 ~~~~~~~l~~~~~~L~~g  144 (233)
T PRK05134        127 VPDPASFVRACAKLVKPG  144 (233)
T ss_pred             cCCHHHHHHHHHHHcCCC
Confidence            459999999999999986

>PLN03075 nicotianamine synthase; Provisional

Probab=99.12  E-value=4e-10  Score=94.21  Aligned_cols=78  Identities=18%  Similarity=0.239  Sum_probs=62.6

Q ss_pred             CCCEEEEEcCCCchhHhh------ccCCeEEEEeCCC-----------------CCceEEEecCCCCCCCCCceeeEeec
Q psy10644        118 GRLVIADLGCGEAKLAAE------LTQHKVHSLDLVA-----------------LNERVTSCDMTRTPLKPYSVDVAVFC  174 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~------l~~~~v~giDls~-----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~  174 (196)
                      +..+|+|||||.|.++..      +++.+++|+|+++                 .++.|..+|+.+++...+.||+|++.
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~  202 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA  202 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence            468999999997744222      2566899999998                 35889999987764345789999999


Q ss_pred             cccccc---CHHHHHHHHHHhccCC
Q psy10644        175 LSLMGT---DLAACIKEANRILKLG  196 (196)
Q Consensus       175 ~~lh~~---d~~~~l~e~~rvLkpg  196 (196)
                       ++|+.   ++.++++++++.|+||
T Consensus       203 -ALi~~dk~~k~~vL~~l~~~LkPG  226 (296)
T PLN03075        203 -ALVGMDKEEKVKVIEHLGKHMAPG  226 (296)
T ss_pred             -cccccccccHHHHHHHHHHhcCCC
Confidence             87543   8999999999999997

>TIGR00438 rrmJ cell division protein FtsJ

Probab=99.11  E-value=5e-10  Score=87.89  Aligned_cols=80  Identities=20%  Similarity=0.151  Sum_probs=61.2

Q ss_pred             CCCCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC----CCceEEEecCCCCC--------CCCCceeeEeeccccc-
Q psy10644        117 KGRLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA----LNERVTSCDMTRTP--------LKPYSVDVAVFCLSLM-  178 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~----~~~~~~~~d~~~lp--------~~~~sfD~Vi~~~~lh-  178 (196)
                      .++.+|||+|||+|.++..+     ...+|+++|+++    .++.++.+|+.+.+        ++.++||+|++..+.| 
T Consensus        31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~~~~  110 (188)
T TIGR00438        31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMKPIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAAPNI  110 (188)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccccCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcCCCCCC
Confidence            34789999999999987766     234799999999    37788888886543        4567899999854321 


Q ss_pred             ----cc-------CHHHHHHHHHHhccCC
Q psy10644        179 ----GT-------DLAACIKEANRILKLG  196 (196)
Q Consensus       179 ----~~-------d~~~~l~e~~rvLkpg  196 (196)
                          ..       +...++.+++++||||
T Consensus       111 ~g~~~~~~~~~~~~~~~~l~~~~~~Lkpg  139 (188)
T TIGR00438       111 SGYWDIDHLRSIDLVELALDIAKEVLKPK  139 (188)
T ss_pred             CCCccccHHHHHHHHHHHHHHHHHHccCC
Confidence                11       2368999999999997

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=99.10  E-value=2.9e-11  Score=96.62  Aligned_cols=113  Identities=18%  Similarity=0.239  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHhhhh-cCCCChHHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCCC----------C
Q psy10644         84 SFEAYHEGFKKQVT-QWPINPVDIIIKSIQERESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVAL----------N  150 (196)
Q Consensus        84 ~f~~y~~~y~~~~~-~w~~~~~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~~----------~  150 (196)
                      .||.|.+.|.+++- +.....-..+.+.|......+-.++||+|||||..+..|  ...+++|+|||..          .
T Consensus        90 LFD~~Ae~Fd~~LVdkL~Y~vP~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eKg~Y  169 (287)
T COG4976          90 LFDQYAERFDHILVDKLGYSVPELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKGLY  169 (287)
T ss_pred             HHHHHHHHHHHHHHHHhcCccHHHHHHHHHhccCCccceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhccch
Confidence            78889888876542 332232233344555545444579999999999999998  3458999999982          2


Q ss_pred             ceEEEecCCC-CC-CCCCceeeEeeccccccc-CHHHHHHHHHHhccCC
Q psy10644        151 ERVTSCDMTR-TP-LKPYSVDVAVFCLSLMGT-DLAACIKEANRILKLG  196 (196)
Q Consensus       151 ~~~~~~d~~~-lp-~~~~sfD~Vi~~~~lh~~-d~~~~l~e~~rvLkpg  196 (196)
                      ....+++... ++ ..++.||+|++..+|.+. +.+.++.-+...|+||
T Consensus       170 D~L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~g  218 (287)
T COG4976         170 DTLYVAEAVLFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPG  218 (287)
T ss_pred             HHHHHHHHHHHhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCC
Confidence            2344455432 23 567889999999999777 9999999999999987

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.09  E-value=5.8e-10  Score=86.37  Aligned_cols=87  Identities=26%  Similarity=0.402  Sum_probs=64.5

Q ss_pred             HHHHHHHhhcCCCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC---------------CCceEEEecCCCCCCCCC
Q psy10644        106 IIIKSIQERESKGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA---------------LNERVTSCDMTRTPLKPY  166 (196)
Q Consensus       106 ~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~---------------~~~~~~~~d~~~lp~~~~  166 (196)
                      .+++.+...   +..+|||+|||+|.++..+    +..+|+++|+++               .++.+..+|+.+ +++++
T Consensus        22 lL~~~l~~~---~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~-~~~~~   97 (170)
T PF05175_consen   22 LLLDNLPKH---KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFE-ALPDG   97 (170)
T ss_dssp             HHHHHHHHH---TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTT-TCCTT
T ss_pred             HHHHHHhhc---cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccc-ccccc
Confidence            445555443   3679999999999998888    233799999999               237788888754 34478


Q ss_pred             ceeeEeeccccccc-C-----HHHHHHHHHHhccCC
Q psy10644        167 SVDVAVFCLSLMGT-D-----LAACIKEANRILKLG  196 (196)
Q Consensus       167 sfD~Vi~~~~lh~~-d-----~~~~l~e~~rvLkpg  196 (196)
                      .||+|+++--+|.. +     ...++.++.++||||
T Consensus        98 ~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~  133 (170)
T PF05175_consen   98 KFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPG  133 (170)
T ss_dssp             CEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEE
T ss_pred             ceeEEEEccchhcccccchhhHHHHHHHHHHhccCC
Confidence            99999999877533 2     578999999999986

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PRK14967 putative methyltransferase; Provisional

Probab=99.07  E-value=1e-09  Score=88.41  Aligned_cols=92  Identities=18%  Similarity=0.211  Sum_probs=65.4

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc--cCC-eEEEEeCCC--------------CCceEEEecCCCCCCCCC
Q psy10644        104 VDIIIKSIQERESKGRLVIADLGCGEAKLAAEL--TQH-KVHSLDLVA--------------LNERVTSCDMTRTPLKPY  166 (196)
Q Consensus       104 ~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l--~~~-~v~giDls~--------------~~~~~~~~d~~~lp~~~~  166 (196)
                      ...+.+.+......++.+|||+|||+|.++..+  .+. +|+++|+++              .++.++..|+.. .++++
T Consensus        22 s~~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~-~~~~~  100 (223)
T PRK14967         22 TQLLADALAAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWAR-AVEFR  100 (223)
T ss_pred             HHHHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhh-hccCC
Confidence            344555555444445789999999999998877  233 899999998              135667777755 35677


Q ss_pred             ceeeEeeccccc-cc---------------------CHHHHHHHHHHhccCC
Q psy10644        167 SVDVAVFCLSLM-GT---------------------DLAACIKEANRILKLG  196 (196)
Q Consensus       167 sfD~Vi~~~~lh-~~---------------------d~~~~l~e~~rvLkpg  196 (196)
                      +||+|+++.-.+ ..                     ....+++++.++||||
T Consensus       101 ~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~g  152 (223)
T PRK14967        101 PFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPG  152 (223)
T ss_pred             CeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCC
Confidence            999999974331 10                     1456889999999987

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.07  E-value=6.8e-10  Score=94.01  Aligned_cols=85  Identities=19%  Similarity=0.218  Sum_probs=59.0

Q ss_pred             HHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCCC--------------------CceEEEecCCCCC
Q psy10644        105 DIIIKSIQERESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVAL--------------------NERVTSCDMTRTP  162 (196)
Q Consensus       105 ~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~~--------------------~~~~~~~d~~~lp  162 (196)
                      +.+++++......++.+|||||||+|.++..+  .+.+|+|+|+|+.                    ++.+...|++.+ 
T Consensus       131 ~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l-  209 (315)
T PLN02585        131 EKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL-  209 (315)
T ss_pred             HHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc-
Confidence            34455554321123679999999999999888  5679999999981                    235666666543 


Q ss_pred             CCCCceeeEeecccc-cccC--HHHHHHHHHHh
Q psy10644        163 LKPYSVDVAVFCLSL-MGTD--LAACIKEANRI  192 (196)
Q Consensus       163 ~~~~sfD~Vi~~~~l-h~~d--~~~~l~e~~rv  192 (196)
                        +++||+|+|+.++ |..+  ...+++.+.++
T Consensus       210 --~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~l  240 (315)
T PLN02585        210 --SGKYDTVTCLDVLIHYPQDKADGMIAHLASL  240 (315)
T ss_pred             --CCCcCEEEEcCEEEecCHHHHHHHHHHHHhh
Confidence              5789999999998 5543  34466666654

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.06  E-value=3.8e-10  Score=90.45  Aligned_cols=79  Identities=27%  Similarity=0.313  Sum_probs=65.2

Q ss_pred             CCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC--------------C-CceEEEecCCCCCCC-CCceeeEeecccccc
Q psy10644        118 GRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA--------------L-NERVTSCDMTRTPLK-PYSVDVAVFCLSLMG  179 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~--------------~-~~~~~~~d~~~lp~~-~~sfD~Vi~~~~lh~  179 (196)
                      .+.+|||+|||+|.++..+  .+.+|+++|+++              . ++.+...|+..++.+ .++||+|++..++|+
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~  124 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLEH  124 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHHh
Confidence            3679999999999998877  456899999987              1 467777787766544 378999999999965


Q ss_pred             c-CHHHHHHHHHHhccCC
Q psy10644        180 T-DLAACIKEANRILKLG  196 (196)
Q Consensus       180 ~-d~~~~l~e~~rvLkpg  196 (196)
                      . ++..++.++.++|+||
T Consensus       125 ~~~~~~~l~~~~~~L~~g  142 (224)
T TIGR01983       125 VPDPQAFIRACAQLLKPG  142 (224)
T ss_pred             CCCHHHHHHHHHHhcCCC
Confidence            5 9999999999999986

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.06  E-value=1.1e-09  Score=87.25  Aligned_cols=77  Identities=23%  Similarity=0.179  Sum_probs=59.2

Q ss_pred             cCCCCCEEEEEcCCCchhHhhcc-----CCeEEEEeCCC----------------CCceEEEecCCCCCCCCCceeeEee
Q psy10644        115 ESKGRLVIADLGCGEAKLAAELT-----QHKVHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAVF  173 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l~-----~~~v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~  173 (196)
                      ...++.+|||||||+|..+..+.     +.+|+++|+++                .++.++.+|........++||+|++
T Consensus        69 ~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~  148 (205)
T PRK13944         69 EPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIV  148 (205)
T ss_pred             CCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEE
Confidence            44457899999999999876661     46999999998                1367888898765445679999999


Q ss_pred             cccccccCHHHHHHHHHHhccCC
Q psy10644        174 CLSLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       174 ~~~lh~~d~~~~l~e~~rvLkpg  196 (196)
                      ..+++..     ..++.++||||
T Consensus       149 ~~~~~~~-----~~~l~~~L~~g  166 (205)
T PRK13944        149 TAAASTI-----PSALVRQLKDG  166 (205)
T ss_pred             ccCcchh-----hHHHHHhcCcC
Confidence            9887422     24788999987

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=99.05  E-value=1.5e-09  Score=87.70  Aligned_cols=107  Identities=11%  Similarity=0.042  Sum_probs=79.7

Q ss_pred             HHHHhhhhcC-CCChHHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC------------------
Q psy10644         90 EGFKKQVTQW-PINPVDIIIKSIQERESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA------------------  148 (196)
Q Consensus        90 ~~y~~~~~~w-~~~~~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~------------------  148 (196)
                      +.|.+.--.| ...+...+.+++......++.+||+.|||.|.-+..|  .|++|+|+|+|+                  
T Consensus        14 ~rw~~~~~~f~~~~pnp~L~~~~~~l~~~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~   93 (226)
T PRK13256         14 DRWQNDDVGFCQESPNEFLVKHFSKLNINDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIH   93 (226)
T ss_pred             HHHhcCCCCCccCCCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceec
Confidence            3444332345 2334445556666555445689999999999999999  788999999998                  


Q ss_pred             ---------CCceEEEecCCCCCCC---CCceeeEeeccccccc---CHHHHHHHHHHhccCC
Q psy10644        149 ---------LNERVTSCDMTRTPLK---PYSVDVAVFCLSLMGT---DLAACIKEANRILKLG  196 (196)
Q Consensus       149 ---------~~~~~~~~d~~~lp~~---~~sfD~Vi~~~~lh~~---d~~~~l~e~~rvLkpg  196 (196)
                               .++.+.++|+.+++..   .+.||+|+-..+|+..   ...+.++.+.++|+||
T Consensus        94 ~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pg  156 (226)
T PRK13256         94 GNDYKLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNN  156 (226)
T ss_pred             ccccceeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCC
Confidence                     1568889999887642   2689999998888533   5778999999999996

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.04  E-value=7.4e-10  Score=95.80  Aligned_cols=80  Identities=16%  Similarity=0.194  Sum_probs=64.5

Q ss_pred             CCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC---------------CCceEEEecCCCC--CCCCCceeeEeecc
Q psy10644        117 KGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA---------------LNERVTSCDMTRT--PLKPYSVDVAVFCL  175 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~---------------~~~~~~~~d~~~l--p~~~~sfD~Vi~~~  175 (196)
                      ..+..+||||||+|.++..+    +...++|+|+++               .|+.++.+|+..+  .++++++|.|++.+
T Consensus       121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnF  200 (390)
T PRK14121        121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHF  200 (390)
T ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeC
Confidence            34568999999999998877    457999999997               4788999998654  57889999999876


Q ss_pred             ccccc-C------HHHHHHHHHHhccCC
Q psy10644        176 SLMGT-D------LAACIKEANRILKLG  196 (196)
Q Consensus       176 ~lh~~-d------~~~~l~e~~rvLkpg  196 (196)
                      ...|. .      ...++.+++|+||||
T Consensus       201 PdPW~KkrHRRlv~~~fL~e~~RvLkpG  228 (390)
T PRK14121        201 PVPWDKKPHRRVISEDFLNEALRVLKPG  228 (390)
T ss_pred             CCCccccchhhccHHHHHHHHHHHcCCC
Confidence            55222 1      268999999999997

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.04  E-value=6.2e-10  Score=87.48  Aligned_cols=81  Identities=17%  Similarity=0.215  Sum_probs=60.0

Q ss_pred             cCCCCCEEEEEcCCCchhHhhccCC--eEEEEeCCC-------------CCceEEEecCCCCCCCCCceeeEeecccccc
Q psy10644        115 ESKGRLVIADLGCGEAKLAAELTQH--KVHSLDLVA-------------LNERVTSCDMTRTPLKPYSVDVAVFCLSLMG  179 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l~~~--~v~giDls~-------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~  179 (196)
                      +...-.++||+|||.|.++..|...  +++++|+|+             +++.|.+.|+.+. .|++.||+|+++.++|+
T Consensus        40 p~~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~-~P~~~FDLIV~SEVlYY  118 (201)
T PF05401_consen   40 PRRRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAGLPHVEWIQADVPEF-WPEGRFDLIVLSEVLYY  118 (201)
T ss_dssp             TTSSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT----SS-EEEEEEES-GGG
T ss_pred             CccccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCC-CCCCCeeEEEEehHhHc
Confidence            4434578999999999999999433  899999998             6899999999664 57899999999999976


Q ss_pred             c-C---HHHHHHHHHHhccCC
Q psy10644        180 T-D---LAACIKEANRILKLG  196 (196)
Q Consensus       180 ~-d---~~~~l~e~~rvLkpg  196 (196)
                      . +   ...++..+...|+||
T Consensus       119 L~~~~~L~~~l~~l~~~L~pg  139 (201)
T PF05401_consen  119 LDDAEDLRAALDRLVAALAPG  139 (201)
T ss_dssp             SSSHHHHHHHHHHHHHTEEEE
T ss_pred             CCCHHHHHHHHHHHHHHhCCC
Confidence            5 3   456889999999886

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.04  E-value=1.7e-09  Score=84.21  Aligned_cols=76  Identities=21%  Similarity=0.276  Sum_probs=59.1

Q ss_pred             CCEEEEEcCCCchhHhhc--cCCeEEEEeCCC--------------CCceEEEecCCCCCCCCCceeeEeeccccccc-C
Q psy10644        119 RLVIADLGCGEAKLAAEL--TQHKVHSLDLVA--------------LNERVTSCDMTRTPLKPYSVDVAVFCLSLMGT-D  181 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l--~~~~v~giDls~--------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~~-d  181 (196)
                      +.+|||+|||+|.++..+  .+.+|+++|+++              .++.++.+|+...+  .++||+|+++..+|.. +
T Consensus        20 ~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~~~~   97 (179)
T TIGR00537        20 PDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLPLED   97 (179)
T ss_pred             CCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc--CCcccEEEECCCCCCCcc
Confidence            568999999999998888  334899999998              24566777875543  4589999998776422 1


Q ss_pred             ---------------------HHHHHHHHHHhccCC
Q psy10644        182 ---------------------LAACIKEANRILKLG  196 (196)
Q Consensus       182 ---------------------~~~~l~e~~rvLkpg  196 (196)
                                           ...+++++.|+||||
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~g  133 (179)
T TIGR00537        98 DLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEG  133 (179)
T ss_pred             hhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCC
Confidence                                 356899999999996

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.03  E-value=1.8e-09  Score=90.93  Aligned_cols=78  Identities=21%  Similarity=0.319  Sum_probs=62.5

Q ss_pred             CCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC---------------CCceEEEecCCCCCCCCCceeeEeecccc
Q psy10644        117 KGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDVAVFCLSL  177 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l  177 (196)
                      .+..+|||||||+|.++..+    ++.+++++|+.+               .++.++.+|+...+++.  +|+|+++.++
T Consensus       148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~--~D~v~~~~~l  225 (306)
T TIGR02716       148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE--ADAVLFCRIL  225 (306)
T ss_pred             CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCCC--CCEEEeEhhh
Confidence            44679999999999998777    456899999743               25778999987666653  6999999999


Q ss_pred             cccC---HHHHHHHHHHhccCC
Q psy10644        178 MGTD---LAACIKEANRILKLG  196 (196)
Q Consensus       178 h~~d---~~~~l~e~~rvLkpg  196 (196)
                      |..+   ...+|++++++||||
T Consensus       226 h~~~~~~~~~il~~~~~~L~pg  247 (306)
T TIGR02716       226 YSANEQLSTIMCKKAFDAMRSG  247 (306)
T ss_pred             hcCChHHHHHHHHHHHHhcCCC
Confidence            7542   357999999999997

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.02  E-value=1.3e-09  Score=94.28  Aligned_cols=77  Identities=21%  Similarity=0.279  Sum_probs=59.3

Q ss_pred             CCEEEEEcCCCchhHhhc----cCCeEEEEeCCCC------------------CceEEEecCCCCCCCCCceeeEeeccc
Q psy10644        119 RLVIADLGCGEAKLAAEL----TQHKVHSLDLVAL------------------NERVTSCDMTRTPLKPYSVDVAVFCLS  176 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l----~~~~v~giDls~~------------------~~~~~~~d~~~lp~~~~sfD~Vi~~~~  176 (196)
                      ..+|||||||+|.++..+    +..+|+++|+|+.                  ++.+...|+.. .+++++||+|+|+--
T Consensus       229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~-~~~~~~fDlIlsNPP  307 (378)
T PRK15001        229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-GVEPFRFNAVLCNPP  307 (378)
T ss_pred             CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccc-cCCCCCEEEEEECcC
Confidence            469999999999998887    3569999999970                  34666666643 234568999999877


Q ss_pred             cccc------CHHHHHHHHHHhccCC
Q psy10644        177 LMGT------DLAACIKEANRILKLG  196 (196)
Q Consensus       177 lh~~------d~~~~l~e~~rvLkpg  196 (196)
                      +|..      ...++|++++++||||
T Consensus       308 fh~~~~~~~~ia~~l~~~a~~~LkpG  333 (378)
T PRK15001        308 FHQQHALTDNVAWEMFHHARRCLKIN  333 (378)
T ss_pred             cccCccCCHHHHHHHHHHHHHhcccC
Confidence            7632      2467899999999997

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.02  E-value=1.6e-09  Score=86.78  Aligned_cols=77  Identities=21%  Similarity=0.103  Sum_probs=59.6

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC---------------CCceEEEecCCCCCCCCCceeeEeec
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDVAVFC  174 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~  174 (196)
                      ...++.+|||||||+|.++..+     ...+|+++|+++               .++.++.+|......+.+.||+|++.
T Consensus        73 ~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~  152 (212)
T PRK13942         73 DLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVT  152 (212)
T ss_pred             CCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEEEC
Confidence            4455889999999999998766     235999999997               36889999987655567899999987


Q ss_pred             ccccccCHHHHHHHHHHhccCC
Q psy10644        175 LSLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       175 ~~lh~~d~~~~l~e~~rvLkpg  196 (196)
                      .+.+.     ....+.+.||||
T Consensus       153 ~~~~~-----~~~~l~~~Lkpg  169 (212)
T PRK13942        153 AAGPD-----IPKPLIEQLKDG  169 (212)
T ss_pred             CCccc-----chHHHHHhhCCC
Confidence            76532     234567789987

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.00  E-value=2.8e-09  Score=86.64  Aligned_cols=78  Identities=28%  Similarity=0.345  Sum_probs=59.7

Q ss_pred             CCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC---------------CCceEEEecCCCCCCCCCceeeEeeccccc
Q psy10644        118 GRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDVAVFCLSLM  178 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh  178 (196)
                      .+.+|||+|||+|.++..+    +..+|+|+|+++               .++.++.+|+.. ++++++||+|+++.-++
T Consensus        87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~  165 (251)
T TIGR03534        87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE-PLPGGKFDLIVSNPPYI  165 (251)
T ss_pred             CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc-cCcCCceeEEEECCCCC
Confidence            3568999999999998877    356999999998               257888888865 45678999999853321


Q ss_pred             c------c---------------------CHHHHHHHHHHhccCC
Q psy10644        179 G------T---------------------DLAACIKEANRILKLG  196 (196)
Q Consensus       179 ~------~---------------------d~~~~l~e~~rvLkpg  196 (196)
                      .      .                     ....++.++.++|+||
T Consensus       166 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~g  210 (251)
T TIGR03534       166 PEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPG  210 (251)
T ss_pred             chhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccC
Confidence            1      0                     1346889999999987

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PRK04266 fibrillarin; Provisional

Probab=99.00  E-value=2.3e-09  Score=86.80  Aligned_cols=80  Identities=18%  Similarity=0.137  Sum_probs=59.5

Q ss_pred             hcCCCCCEEEEEcCCCchhHhhcc----CCeEEEEeCCC-------------CCceEEEecCCC----CCCCCCceeeEe
Q psy10644        114 RESKGRLVIADLGCGEAKLAAELT----QHKVHSLDLVA-------------LNERVTSCDMTR----TPLKPYSVDVAV  172 (196)
Q Consensus       114 ~~~~~~~~ILDlGCG~G~~a~~l~----~~~v~giDls~-------------~~~~~~~~d~~~----lp~~~~sfD~Vi  172 (196)
                      ....++.+|||+|||+|.++..+.    ..+|+|+|+++             .|+.++.+|+..    .++. ++||+|+
T Consensus        68 l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~-~~~D~i~  146 (226)
T PRK04266         68 FPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVV-EKVDVIY  146 (226)
T ss_pred             CCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhcc-ccCCEEE
Confidence            455568899999999999988882    34899999998             477888888864    1233 5699998


Q ss_pred             eccccccc-CHHHHHHHHHHhccCC
Q psy10644        173 FCLSLMGT-DLAACIKEANRILKLG  196 (196)
Q Consensus       173 ~~~~lh~~-d~~~~l~e~~rvLkpg  196 (196)
                      +...  .. ....++++++|+||||
T Consensus       147 ~d~~--~p~~~~~~L~~~~r~LKpG  169 (226)
T PRK04266        147 QDVA--QPNQAEIAIDNAEFFLKDG  169 (226)
T ss_pred             ECCC--ChhHHHHHHHHHHHhcCCC
Confidence            5422  11 2245689999999997

>TIGR03438 probable methyltransferase

Probab=98.99  E-value=4.8e-09  Score=88.36  Aligned_cols=79  Identities=16%  Similarity=0.237  Sum_probs=56.2

Q ss_pred             CCCEEEEEcCCCchhHhhc----c-CCeEEEEeCCC--------------CC--ceEEEecCCC-CCCCCCc---eeeEe
Q psy10644        118 GRLVIADLGCGEAKLAAEL----T-QHKVHSLDLVA--------------LN--ERVTSCDMTR-TPLKPYS---VDVAV  172 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l----~-~~~v~giDls~--------------~~--~~~~~~d~~~-lp~~~~s---fD~Vi  172 (196)
                      ++.+|||+|||+|..+..|    . +.+|+++|+|+              ++  +.++++|+.. ++++...   .++++
T Consensus        63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~  142 (301)
T TIGR03438        63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGF  142 (301)
T ss_pred             CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEE
Confidence            3578999999999988777    2 57999999998              22  3557889865 4444332   23333


Q ss_pred             -eccccccc---CHHHHHHHHHHhccCC
Q psy10644        173 -FCLSLMGT---DLAACIKEANRILKLG  196 (196)
Q Consensus       173 -~~~~lh~~---d~~~~l~e~~rvLkpg  196 (196)
                       +..+++..   +...+|++++++|+||
T Consensus       143 ~~gs~~~~~~~~e~~~~L~~i~~~L~pg  170 (301)
T TIGR03438       143 FPGSTIGNFTPEEAVAFLRRIRQLLGPG  170 (301)
T ss_pred             EecccccCCCHHHHHHHHHHHHHhcCCC
Confidence             33445433   5677999999999997

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=98.98  E-value=5.1e-10  Score=80.63  Aligned_cols=78  Identities=22%  Similarity=0.233  Sum_probs=61.4

Q ss_pred             CCEEEEEcCCCchhHhhc--cC-CeEEEEeCCC----------------CCceEEEecCCCCC--CCCCceeeEeecccc
Q psy10644        119 RLVIADLGCGEAKLAAEL--TQ-HKVHSLDLVA----------------LNERVTSCDMTRTP--LKPYSVDVAVFCLSL  177 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l--~~-~~v~giDls~----------------~~~~~~~~d~~~lp--~~~~sfD~Vi~~~~l  177 (196)
                      +.+|||+|||+|.++..+  .+ .+++|+|+++                .++.++++|+..+.  +++++||+|+++--+
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~   80 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY   80 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred             CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence            358999999999997777  44 7999999999                35789999987764  778999999998766


Q ss_pred             ccc---------CHHHHHHHHHHhccCC
Q psy10644        178 MGT---------DLAACIKEANRILKLG  196 (196)
Q Consensus       178 h~~---------d~~~~l~e~~rvLkpg  196 (196)
                      +..         ....+++++.++||||
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~g  108 (117)
T PF13659_consen   81 GPRSGDKAALRRLYSRFLEAAARLLKPG  108 (117)
T ss_dssp             TSBTT----GGCHHHHHHHHHHHHEEEE
T ss_pred             ccccccchhhHHHHHHHHHHHHHHcCCC
Confidence            321         2468899999999986

...

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=98.98  E-value=5.2e-09  Score=82.03  Aligned_cols=76  Identities=20%  Similarity=0.174  Sum_probs=58.5

Q ss_pred             CCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC---------------CCceEEEecCCCCCCCCCceeeEeecccc
Q psy10644        117 KGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDVAVFCLSL  177 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l  177 (196)
                      .++.+|||||||+|.++..+    ++.+|+++|+++               .++.+..+|.. .++ .++||+|++....
T Consensus        30 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~-~~~-~~~~D~v~~~~~~  107 (187)
T PRK08287         30 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAP-IEL-PGKADAIFIGGSG  107 (187)
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCch-hhc-CcCCCEEEECCCc
Confidence            34779999999999998776    346999999998               24566777763 233 3579999987654


Q ss_pred             cccCHHHHHHHHHHhccCC
Q psy10644        178 MGTDLAACIKEANRILKLG  196 (196)
Q Consensus       178 h~~d~~~~l~e~~rvLkpg  196 (196)
                      +  ....++++++++||||
T Consensus       108 ~--~~~~~l~~~~~~Lk~g  124 (187)
T PRK08287        108 G--NLTAIIDWSLAHLHPG  124 (187)
T ss_pred             c--CHHHHHHHHHHhcCCC
Confidence            2  3577899999999997

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=98.97  E-value=2.4e-09  Score=91.70  Aligned_cols=76  Identities=22%  Similarity=0.265  Sum_probs=59.5

Q ss_pred             CCEEEEEcCCCchhHhhc----cCCeEEEEeCCC--------------CCceEEEecCCCCCCCCCceeeEeeccccccc
Q psy10644        119 RLVIADLGCGEAKLAAEL----TQHKVHSLDLVA--------------LNERVTSCDMTRTPLKPYSVDVAVFCLSLMGT  180 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l----~~~~v~giDls~--------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~~  180 (196)
                      ..+|||||||+|.++..+    +..+|+++|+++              ....++..|+..  ..++.||+|+++..+|..
T Consensus       197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~--~~~~~fDlIvsNPPFH~g  274 (342)
T PRK09489        197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFS--DIKGRFDMIISNPPFHDG  274 (342)
T ss_pred             CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEccccc--ccCCCccEEEECCCccCC
Confidence            458999999999998887    345899999997              123456666644  235789999999888741


Q ss_pred             ------CHHHHHHHHHHhccCC
Q psy10644        181 ------DLAACIKEANRILKLG  196 (196)
Q Consensus       181 ------d~~~~l~e~~rvLkpg  196 (196)
                            ....+|+++.++||||
T Consensus       275 ~~~~~~~~~~~i~~a~~~Lkpg  296 (342)
T PRK09489        275 IQTSLDAAQTLIRGAVRHLNSG  296 (342)
T ss_pred             ccccHHHHHHHHHHHHHhcCcC
Confidence                  4678999999999997

>PTZ00146 fibrillarin; Provisional

Probab=98.94  E-value=3.3e-09  Score=88.55  Aligned_cols=87  Identities=15%  Similarity=0.056  Sum_probs=64.1

Q ss_pred             HHHHhhcCCCCCEEEEEcCCCchhHhhcc-----CCeEEEEeCCC-------------CCceEEEecCCC---CCCCCCc
Q psy10644        109 KSIQERESKGRLVIADLGCGEAKLAAELT-----QHKVHSLDLVA-------------LNERVTSCDMTR---TPLKPYS  167 (196)
Q Consensus       109 ~~l~~~~~~~~~~ILDlGCG~G~~a~~l~-----~~~v~giDls~-------------~~~~~~~~d~~~---lp~~~~s  167 (196)
                      .-+......++.+|||+|||+|.++..+.     ...|+++|+++             .|+.++.+|+..   +.+...+
T Consensus       123 ~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~  202 (293)
T PTZ00146        123 GGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPM  202 (293)
T ss_pred             CCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCC
Confidence            33444555678899999999999988882     35899999986             478888889753   2223458


Q ss_pred             eeeEeecccccccCHHHHHHHHHHhccCC
Q psy10644        168 VDVAVFCLSLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       168 fD~Vi~~~~lh~~d~~~~l~e~~rvLkpg  196 (196)
                      ||+|++..+ ...+...++.+++++||||
T Consensus       203 vDvV~~Dva-~pdq~~il~~na~r~LKpG  230 (293)
T PTZ00146        203 VDVIFADVA-QPDQARIVALNAQYFLKNG  230 (293)
T ss_pred             CCEEEEeCC-CcchHHHHHHHHHHhccCC
Confidence            999988764 2224445677999999997

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=98.93  E-value=5.4e-09  Score=83.82  Aligned_cols=77  Identities=22%  Similarity=0.075  Sum_probs=58.4

Q ss_pred             cCCCCCEEEEEcCCCchhHhhcc-----CCeEEEEeCCC---------------CCceEEEecCCCCCCCCCceeeEeec
Q psy10644        115 ESKGRLVIADLGCGEAKLAAELT-----QHKVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDVAVFC  174 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l~-----~~~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~  174 (196)
                      ...++.+|||||||+|.++..|.     ..+|+++|+++               .++.++.+|........+.||+|++.
T Consensus        74 ~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~  153 (215)
T TIGR00080        74 ELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAPYDRIYVT  153 (215)
T ss_pred             CCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCCCCEEEEc
Confidence            44567899999999999988772     23699999998               36788888986654445789999987


Q ss_pred             ccccccCHHHHHHHHHHhccCC
Q psy10644        175 LSLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       175 ~~lh~~d~~~~l~e~~rvLkpg  196 (196)
                      ....     .....+.+.||||
T Consensus       154 ~~~~-----~~~~~~~~~L~~g  170 (215)
T TIGR00080       154 AAGP-----KIPEALIDQLKEG  170 (215)
T ss_pred             CCcc-----cccHHHHHhcCcC
Confidence            6652     2335578889987

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=98.92  E-value=4.9e-09  Score=71.87  Aligned_cols=76  Identities=36%  Similarity=0.458  Sum_probs=62.4

Q ss_pred             EEEEEcCCCchhHhhcc---CCeEEEEeCCC---------------CCceEEEecCCCCCC-CCCceeeEeecccccc-c
Q psy10644        121 VIADLGCGEAKLAAELT---QHKVHSLDLVA---------------LNERVTSCDMTRTPL-KPYSVDVAVFCLSLMG-T  180 (196)
Q Consensus       121 ~ILDlGCG~G~~a~~l~---~~~v~giDls~---------------~~~~~~~~d~~~lp~-~~~sfD~Vi~~~~lh~-~  180 (196)
                      +|+|+|||.|.++..+.   ..+++++|+++               .++.+...|+.+... ..+.||+|++..+++. .
T Consensus         1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~   80 (107)
T cd02440           1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHLV   80 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeehh
Confidence            48999999999987773   45999999987               356777788766543 5678999999999965 4


Q ss_pred             -CHHHHHHHHHHhccCC
Q psy10644        181 -DLAACIKEANRILKLG  196 (196)
Q Consensus       181 -d~~~~l~e~~rvLkpg  196 (196)
                       ....+++.+.++||||
T Consensus        81 ~~~~~~l~~~~~~l~~~   97 (107)
T cd02440          81 EDLARFLEEARRLLKPG   97 (107)
T ss_pred             hHHHHHHHHHHHHcCCC
Confidence             8899999999999986

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=98.90  E-value=1.1e-08  Score=80.99  Aligned_cols=82  Identities=20%  Similarity=0.185  Sum_probs=61.5

Q ss_pred             hhcCCCCCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC----------------CCceEEEecCCCC-CCCCCceee
Q psy10644        113 ERESKGRLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA----------------LNERVTSCDMTRT-PLKPYSVDV  170 (196)
Q Consensus       113 ~~~~~~~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~----------------~~~~~~~~d~~~l-p~~~~sfD~  170 (196)
                      .....++.+|||+|||+|.++..+     .+.+|+++|+++                .++.++.+|+.+. +...+.||+
T Consensus        35 ~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~  114 (198)
T PRK00377         35 KLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDR  114 (198)
T ss_pred             HcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCE
Confidence            334456789999999999987765     235899999998                2466777787653 333468999


Q ss_pred             EeecccccccCHHHHHHHHHHhccCC
Q psy10644        171 AVFCLSLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       171 Vi~~~~lh~~d~~~~l~e~~rvLkpg  196 (196)
                      |++...  ..++..+++++.++||||
T Consensus       115 V~~~~~--~~~~~~~l~~~~~~Lkpg  138 (198)
T PRK00377        115 IFIGGG--SEKLKEIISASWEIIKKG  138 (198)
T ss_pred             EEECCC--cccHHHHHHHHHHHcCCC
Confidence            988542  236788999999999996

>KOG2361|consensus

Probab=98.90  E-value=4.8e-09  Score=84.51  Aligned_cols=76  Identities=26%  Similarity=0.376  Sum_probs=60.8

Q ss_pred             EEEEEcCCCchhHhhc----cC--CeEEEEeCCC--------------CCceEEEecCCC----CCCCCCceeeEeeccc
Q psy10644        121 VIADLGCGEAKLAAEL----TQ--HKVHSLDLVA--------------LNERVTSCDMTR----TPLKPYSVDVAVFCLS  176 (196)
Q Consensus       121 ~ILDlGCG~G~~a~~l----~~--~~v~giDls~--------------~~~~~~~~d~~~----lp~~~~sfD~Vi~~~~  176 (196)
                      +||+||||.|.....+    ++  ..|+++|.||              .++...++|+..    -|+..+++|+|++.++
T Consensus        74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFv  153 (264)
T KOG2361|consen   74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFV  153 (264)
T ss_pred             hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEE
Confidence            8999999999987777    22  5899999999              244555666532    3577899999999999


Q ss_pred             cc---ccCHHHHHHHHHHhccCC
Q psy10644        177 LM---GTDLAACIKEANRILKLG  196 (196)
Q Consensus       177 lh---~~d~~~~l~e~~rvLkpg  196 (196)
                      |.   ...+..++.+++++||||
T Consensus       154 LSAi~pek~~~a~~nl~~llKPG  176 (264)
T KOG2361|consen  154 LSAIHPEKMQSVIKNLRTLLKPG  176 (264)
T ss_pred             EeccChHHHHHHHHHHHHHhCCC
Confidence            83   337889999999999998

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=98.89  E-value=9.5e-09  Score=86.06  Aligned_cols=84  Identities=19%  Similarity=0.233  Sum_probs=58.2

Q ss_pred             HHHHHhhcCCCCCEEEEEcCCCchhHhhc--c-CCeEEEEeCCCC----------------CceEEEecCCCCCCCCCce
Q psy10644        108 IKSIQERESKGRLVIADLGCGEAKLAAEL--T-QHKVHSLDLVAL----------------NERVTSCDMTRTPLKPYSV  168 (196)
Q Consensus       108 ~~~l~~~~~~~~~~ILDlGCG~G~~a~~l--~-~~~v~giDls~~----------------~~~~~~~d~~~lp~~~~sf  168 (196)
                      ++.+.... .++.+|||+|||+|.++..+  . ..+|+++|+++.                .+.+...+.  .+..+++|
T Consensus       150 l~~l~~~~-~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~--~~~~~~~f  226 (288)
T TIGR00406       150 LEWLEDLD-LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYL--EQPIEGKA  226 (288)
T ss_pred             HHHHHhhc-CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccc--ccccCCCc
Confidence            34444333 34689999999999987766  2 348999999981                123333332  23446789


Q ss_pred             eeEeecccccccCHHHHHHHHHHhccCC
Q psy10644        169 DVAVFCLSLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       169 D~Vi~~~~lh~~d~~~~l~e~~rvLkpg  196 (196)
                      |+|+++...+  ....++.++.++||||
T Consensus       227 DlVvan~~~~--~l~~ll~~~~~~Lkpg  252 (288)
T TIGR00406       227 DVIVANILAE--VIKELYPQFSRLVKPG  252 (288)
T ss_pred             eEEEEecCHH--HHHHHHHHHHHHcCCC
Confidence            9999875433  3467899999999997

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=98.88  E-value=9e-09  Score=87.70  Aligned_cols=80  Identities=24%  Similarity=0.172  Sum_probs=64.4

Q ss_pred             CCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC---------------CCceEEEecCCCCCCCCCceeeEeecccc--
Q psy10644        117 KGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDVAVFCLSL--  177 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l--  177 (196)
                      .++.+|||+|||+|.++..+  .+.+|+|+|+++               .++.+..+|+.++|+++++||+|++..-+  
T Consensus       181 ~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPPyg~  260 (329)
T TIGR01177       181 TEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPPYGR  260 (329)
T ss_pred             CCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCCCcC
Confidence            45789999999999986655  577999999998               24578899999999888899999996322  


Q ss_pred             ----cc--c--CHHHHHHHHHHhccCC
Q psy10644        178 ----MG--T--DLAACIKEANRILKLG  196 (196)
Q Consensus       178 ----h~--~--d~~~~l~e~~rvLkpg  196 (196)
                          ..  .  -...++.+++|+||||
T Consensus       261 ~~~~~~~~~~~l~~~~l~~~~r~Lk~g  287 (329)
T TIGR01177       261 STTAAGDGLESLYERSLEEFHEVLKSE  287 (329)
T ss_pred             cccccCCchHHHHHHHHHHHHHHccCC
Confidence                11  1  2578999999999997

This family is found exclusively in the Archaea.

>PRK14968 putative methyltransferase; Provisional

Probab=98.85  E-value=1.8e-08  Score=78.30  Aligned_cols=78  Identities=23%  Similarity=0.316  Sum_probs=59.6

Q ss_pred             CCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC---------------CC--ceEEEecCCCCCCCCCceeeEeeccccc
Q psy10644        118 GRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA---------------LN--ERVTSCDMTRTPLKPYSVDVAVFCLSLM  178 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~---------------~~--~~~~~~d~~~lp~~~~sfD~Vi~~~~lh  178 (196)
                      ++.+|||+|||+|.++..+  .+.+|+++|+++               .+  +.++.+|+.. ++.+..||+|++...++
T Consensus        23 ~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p~~  101 (188)
T PRK14968         23 KGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPPYL  101 (188)
T ss_pred             CCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCceEEEECCCcC
Confidence            3678999999999998888  467999999998               12  6777888755 34556899999865442


Q ss_pred             c---------------------c-CHHHHHHHHHHhccCC
Q psy10644        179 G---------------------T-DLAACIKEANRILKLG  196 (196)
Q Consensus       179 ~---------------------~-d~~~~l~e~~rvLkpg  196 (196)
                      .                     . ....+++++.++||||
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~g  141 (188)
T PRK14968        102 PTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPG  141 (188)
T ss_pred             CCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCC
Confidence            1                     1 2466899999999986

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=98.85  E-value=9.9e-09  Score=82.71  Aligned_cols=107  Identities=19%  Similarity=0.187  Sum_probs=75.7

Q ss_pred             HHHHhhhhcCCC-ChHHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC------------------
Q psy10644         90 EGFKKQVTQWPI-NPVDIIIKSIQERESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA------------------  148 (196)
Q Consensus        90 ~~y~~~~~~w~~-~~~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~------------------  148 (196)
                      +.|.+..-.|-. .+...+.+++.......+.+||..|||.|.-+..|  .|++|+|+|+|+                  
T Consensus         8 ~~w~~~~~~w~~~~~~p~L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~   87 (218)
T PF05724_consen    8 ERWQEGQTPWDQGEPNPALVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTS   87 (218)
T ss_dssp             HHHHTT--TT--TTSTHHHHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTT
T ss_pred             HHHhcCCCCCCCCCCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCccc
Confidence            334433334543 23445556665544555779999999999999888  678999999998                  


Q ss_pred             ---------CCceEEEecCCCCCCCC-CceeeEeecccccc---cCHHHHHHHHHHhccCC
Q psy10644        149 ---------LNERVTSCDMTRTPLKP-YSVDVAVFCLSLMG---TDLAACIKEANRILKLG  196 (196)
Q Consensus       149 ---------~~~~~~~~d~~~lp~~~-~sfD~Vi~~~~lh~---~d~~~~l~e~~rvLkpg  196 (196)
                               .++.+.++|+.+++... +.||+|+-..+|+.   ....+..+.+.++||||
T Consensus        88 ~~~~~~~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~  148 (218)
T PF05724_consen   88 VGGFKRYQAGRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPG  148 (218)
T ss_dssp             CTTEEEETTSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEE
T ss_pred             ccceeeecCCceEEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCC
Confidence                     24578889998876443 57999998877753   27889999999999986

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=98.82  E-value=2.6e-08  Score=79.54  Aligned_cols=77  Identities=21%  Similarity=0.097  Sum_probs=57.0

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC---------------CCceEEEecCCCCCCCCCceeeEeecccc
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDVAVFCLSL  177 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l  177 (196)
                      ...++.+|||+|||+|.++..+  ...+|+++|+++               .++.+..+|......+.+.||+|++..++
T Consensus        75 ~~~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~  154 (212)
T PRK00312         75 ELKPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAAA  154 (212)
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccCc
Confidence            4455789999999999988766  235899999998               25778888875432234789999988765


Q ss_pred             cccCHHHHHHHHHHhccCC
Q psy10644        178 MGTDLAACIKEANRILKLG  196 (196)
Q Consensus       178 h~~d~~~~l~e~~rvLkpg  196 (196)
                      +.     ...++.+.|+||
T Consensus       155 ~~-----~~~~l~~~L~~g  168 (212)
T PRK00312        155 PE-----IPRALLEQLKEG  168 (212)
T ss_pred             hh-----hhHHHHHhcCCC
Confidence            32     235677889886

>KOG1331|consensus

Probab=98.82  E-value=8.7e-09  Score=84.87  Aligned_cols=92  Identities=21%  Similarity=0.289  Sum_probs=76.1

Q ss_pred             hHHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhccCCeEEEEeCCC--------CCc-eEEEecCCCCCCCCCceeeEee
Q psy10644        103 PVDIIIKSIQERESKGRLVIADLGCGEAKLAAELTQHKVHSLDLVA--------LNE-RVTSCDMTRTPLKPYSVDVAVF  173 (196)
Q Consensus       103 ~~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l~~~~v~giDls~--------~~~-~~~~~d~~~lp~~~~sfD~Vi~  173 (196)
                      ++.....++...+.  +..++|+|||.|.....-+.+.++|.|++.        .+. .+.++|+.++|+.+.+||.+++
T Consensus        32 ~Wp~v~qfl~~~~~--gsv~~d~gCGngky~~~~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~ls  109 (293)
T KOG1331|consen   32 PWPMVRQFLDSQPT--GSVGLDVGCGNGKYLGVNPLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAALS  109 (293)
T ss_pred             ccHHHHHHHhccCC--cceeeecccCCcccCcCCCcceeeecchhhhhccccccCCCceeehhhhhcCCCCCCccccchh
Confidence            34556666666565  789999999999887665777899999988        244 6889999999999999999999


Q ss_pred             ccccccc----CHHHHHHHHHHhccCC
Q psy10644        174 CLSLMGT----DLAACIKEANRILKLG  196 (196)
Q Consensus       174 ~~~lh~~----d~~~~l~e~~rvLkpg  196 (196)
                      ..++|+.    -...+++|+.|+||||
T Consensus       110 iavihhlsT~~RR~~~l~e~~r~lrpg  136 (293)
T KOG1331|consen  110 IAVIHHLSTRERRERALEELLRVLRPG  136 (293)
T ss_pred             hhhhhhhhhHHHHHHHHHHHHHHhcCC
Confidence            9999654    4678999999999997

>PRK07402 precorrin-6B methylase; Provisional

Probab=98.81  E-value=3.8e-08  Score=77.67  Aligned_cols=79  Identities=16%  Similarity=0.174  Sum_probs=56.5

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC---------------CCceEEEecCCC-CCCCCCceeeEeec
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA---------------LNERVTSCDMTR-TPLKPYSVDVAVFC  174 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~---------------~~~~~~~~d~~~-lp~~~~sfD~Vi~~  174 (196)
                      ...++.+|||+|||+|.++..+    .+.+|+++|+++               .++.++.+|+.. ++.-...+|.|++.
T Consensus        37 ~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~  116 (196)
T PRK07402         37 RLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIE  116 (196)
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEE
Confidence            3345789999999999997776    346999999998               256777777743 22212235665432


Q ss_pred             ccccccCHHHHHHHHHHhccCC
Q psy10644        175 LSLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       175 ~~lh~~d~~~~l~e~~rvLkpg  196 (196)
                      .   ..+...++++++++||||
T Consensus       117 ~---~~~~~~~l~~~~~~Lkpg  135 (196)
T PRK07402        117 G---GRPIKEILQAVWQYLKPG  135 (196)
T ss_pred             C---CcCHHHHHHHHHHhcCCC
Confidence            1   236789999999999997

>TIGR00536 hemK_fam HemK family putative methylases

Probab=98.77  E-value=4.3e-08  Score=81.91  Aligned_cols=76  Identities=25%  Similarity=0.295  Sum_probs=57.5

Q ss_pred             CEEEEEcCCCchhHhhc----cCCeEEEEeCCC----------------CCceEEEecCCCCCCCCCceeeEeecc----
Q psy10644        120 LVIADLGCGEAKLAAEL----TQHKVHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAVFCL----  175 (196)
Q Consensus       120 ~~ILDlGCG~G~~a~~l----~~~~v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~----  175 (196)
                      .+|||+|||+|.++..+    ++.+|+|+|+|+                .++.++.+|+.. +++.+.||+|+++-    
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi~  194 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYID  194 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCCC
Confidence            68999999999998777    346999999998                137788888755 44455899999851    


Q ss_pred             ---------cc-ccc------------CHHHHHHHHHHhccCC
Q psy10644        176 ---------SL-MGT------------DLAACIKEANRILKLG  196 (196)
Q Consensus       176 ---------~l-h~~------------d~~~~l~e~~rvLkpg  196 (196)
                               ++ |.+            ....++.++.++|+||
T Consensus       195 ~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~g  237 (284)
T TIGR00536       195 EEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPN  237 (284)
T ss_pred             cchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCC
Confidence                     11 111            3567889999999986

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.76  E-value=1.5e-07  Score=76.59  Aligned_cols=77  Identities=25%  Similarity=0.333  Sum_probs=61.9

Q ss_pred             CCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC--------CCceEEEecCCCCCCCCCceeeEeecccccc-c--C
Q psy10644        117 KGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA--------LNERVTSCDMTRTPLKPYSVDVAVFCLSLMG-T--D  181 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~--------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~-~--d  181 (196)
                      .+..+|||||+|.|.++..+    ++.+++.+|+-.        .++.++.+|+. -++|.  +|+|++..+||. .  +
T Consensus        99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh~~~d~~  175 (241)
T PF00891_consen   99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKEADRVEFVPGDFF-DPLPV--ADVYLLRHVLHDWSDED  175 (241)
T ss_dssp             TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHHTTTEEEEES-TT-TCCSS--ESEEEEESSGGGS-HHH
T ss_pred             cCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhccccccccccccccHH-hhhcc--ccceeeehhhhhcchHH
Confidence            34568999999999998887    677999999854        58999999997 56665  999999999974 3  5


Q ss_pred             HHHHHHHHHHhccCC
Q psy10644        182 LAACIKEANRILKLG  196 (196)
Q Consensus       182 ~~~~l~e~~rvLkpg  196 (196)
                      -...|+++++.|+||
T Consensus       176 ~~~iL~~~~~al~pg  190 (241)
T PF00891_consen  176 CVKILRNAAAALKPG  190 (241)
T ss_dssp             HHHHHHHHHHHSEEC
T ss_pred             HHHHHHHHHHHhCCC
Confidence            677899999999986

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=98.76  E-value=3.1e-08  Score=76.46  Aligned_cols=64  Identities=19%  Similarity=0.144  Sum_probs=53.5

Q ss_pred             CCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC-------------CCceEEEecCCCCCCCCCceeeEeecccccc
Q psy10644        116 SKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA-------------LNERVTSCDMTRTPLKPYSVDVAVFCLSLMG  179 (196)
Q Consensus       116 ~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~-------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~  179 (196)
                      ..++.+|||||||+|.++..+  .+.+|+++|+++             .++.++.+|+..+++++..||.|+++.-+|.
T Consensus        11 ~~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~vi~n~Py~~   89 (169)
T smart00650       11 LRPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYKVVGNLPYNI   89 (169)
T ss_pred             CCCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCCEEEECCCccc
Confidence            344679999999999999988  456999999998             2678999999998887778999998876664

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.76  E-value=6.7e-08  Score=79.82  Aligned_cols=91  Identities=24%  Similarity=0.269  Sum_probs=63.5

Q ss_pred             HHHHHHHH-hhcCCCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC---------------CCceEEEecCCCCCCC
Q psy10644        105 DIIIKSIQ-ERESKGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA---------------LNERVTSCDMTRTPLK  164 (196)
Q Consensus       105 ~~~~~~l~-~~~~~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~---------------~~~~~~~~d~~~lp~~  164 (196)
                      +.+++.+. .....++.+|||+|||+|.++..+    +..+|+|+|+++               .++.++.+|+.. +++
T Consensus        94 e~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~-~~~  172 (275)
T PRK09328         94 EELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFE-PLP  172 (275)
T ss_pred             HHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccC-cCC
Confidence            44455443 222334679999999999998777    357999999997               257788888744 334


Q ss_pred             CCceeeEeeccccc--------------------------cc-CHHHHHHHHHHhccCC
Q psy10644        165 PYSVDVAVFCLSLM--------------------------GT-DLAACIKEANRILKLG  196 (196)
Q Consensus       165 ~~sfD~Vi~~~~lh--------------------------~~-d~~~~l~e~~rvLkpg  196 (196)
                      +++||+|++..-..                          +. ....++.++.++||||
T Consensus       173 ~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~g  231 (275)
T PRK09328        173 GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPG  231 (275)
T ss_pred             CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccC
Confidence            67999999853211                          00 2467888899999986

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.75  E-value=5.3e-08  Score=82.32  Aligned_cols=76  Identities=20%  Similarity=0.157  Sum_probs=57.1

Q ss_pred             CEEEEEcCCCchhHhhc----cCCeEEEEeCCC----------------CCceEEEecCCCCCCCCCceeeEeeccc---
Q psy10644        120 LVIADLGCGEAKLAAEL----TQHKVHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAVFCLS---  176 (196)
Q Consensus       120 ~~ILDlGCG~G~~a~~l----~~~~v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~---  176 (196)
                      .+|||+|||+|.++..+    ++.+|+++|+|+                .++.++.+|+.. ++++++||+|++.--   
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi~  213 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYVD  213 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCCC
Confidence            68999999999998877    356999999998                147788888754 234568999998621   


Q ss_pred             ------c-----ccc------------CHHHHHHHHHHhccCC
Q psy10644        177 ------L-----MGT------------DLAACIKEANRILKLG  196 (196)
Q Consensus       177 ------l-----h~~------------d~~~~l~e~~rvLkpg  196 (196)
                            +     |..            ....+++++.++|+||
T Consensus       214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pg  256 (307)
T PRK11805        214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTED  256 (307)
T ss_pred             ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCC
Confidence                  0     110            1357889999999997

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=98.74  E-value=7.1e-08  Score=80.67  Aligned_cols=78  Identities=19%  Similarity=0.140  Sum_probs=57.7

Q ss_pred             CCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC----------------CCceEEEecCCCCCCCCCceeeEeeccc-
Q psy10644        118 GRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAVFCLS-  176 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~-  176 (196)
                      +..+|||+|||+|.++..+    ++.+|+|+|+|+                .++.++.+|+.. ++++++||+|+++-- 
T Consensus       121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy  199 (284)
T TIGR03533       121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPY  199 (284)
T ss_pred             CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCC
Confidence            3568999999999998887    356999999998                146788888744 345568999998511 


Q ss_pred             --------c-----ccc------------CHHHHHHHHHHhccCC
Q psy10644        177 --------L-----MGT------------DLAACIKEANRILKLG  196 (196)
Q Consensus       177 --------l-----h~~------------d~~~~l~e~~rvLkpg  196 (196)
                              +     |..            ....++.++.++|+||
T Consensus       200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~g  244 (284)
T TIGR03533       200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNEN  244 (284)
T ss_pred             CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCC
Confidence                    0     100            1356789999999986

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=98.72  E-value=7.6e-09  Score=91.08  Aligned_cols=77  Identities=21%  Similarity=0.292  Sum_probs=59.0

Q ss_pred             CEEEEEcCCCchhHhhccCCeEEEEeCCC-----CCceE--------EEec--CCCCCCCCCceeeEeecccc-ccc-CH
Q psy10644        120 LVIADLGCGEAKLAAELTQHKVHSLDLVA-----LNERV--------TSCD--MTRTPLKPYSVDVAVFCLSL-MGT-DL  182 (196)
Q Consensus       120 ~~ILDlGCG~G~~a~~l~~~~v~giDls~-----~~~~~--------~~~d--~~~lp~~~~sfD~Vi~~~~l-h~~-d~  182 (196)
                      .++||+|||.|.|+..|....|+.+-+.+     ..+.|        +.+-  ...+||++++||+|+|..++ .+. +-
T Consensus       119 R~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~  198 (506)
T PF03141_consen  119 RTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPND  198 (506)
T ss_pred             EEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcchhhhhhccccccCCccchhhhhcccccccchhcc
Confidence            46799999999999999777777766555     12222        2122  24689999999999999998 343 55


Q ss_pred             HHHHHHHHHhccCC
Q psy10644        183 AACIKEANRILKLG  196 (196)
Q Consensus       183 ~~~l~e~~rvLkpg  196 (196)
                      ..+|-|+.|+||||
T Consensus       199 g~~l~evdRvLRpG  212 (506)
T PF03141_consen  199 GFLLFEVDRVLRPG  212 (506)
T ss_pred             cceeehhhhhhccC
Confidence            67999999999998

; GO: 0008168 methyltransferase activity

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=98.72  E-value=1.7e-08  Score=77.38  Aligned_cols=47  Identities=23%  Similarity=0.266  Sum_probs=43.8

Q ss_pred             CceEEEecCCCCCCCCCceeeEeecccccc-cCHHHHHHHHHHhccCC
Q psy10644        150 NERVTSCDMTRTPLKPYSVDVAVFCLSLMG-TDLAACIKEANRILKLG  196 (196)
Q Consensus       150 ~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~-~d~~~~l~e~~rvLkpg  196 (196)
                      ++.++++|++++|+++++||+|++.+++|+ .|+..+++|++|+||||
T Consensus        27 ~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpG   74 (160)
T PLN02232         27 CIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPG   74 (160)
T ss_pred             ceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcC
Confidence            578999999999999999999999999975 49999999999999997

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=98.66  E-value=1.6e-07  Score=81.97  Aligned_cols=74  Identities=15%  Similarity=0.133  Sum_probs=52.0

Q ss_pred             CChHHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC--------------CCceEEEecCCCCC
Q psy10644        101 INPVDIIIKSIQERESKGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA--------------LNERVTSCDMTRTP  162 (196)
Q Consensus       101 ~~~~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~--------------~~~~~~~~d~~~lp  162 (196)
                      ....+.+++.+.... .++.+|||+|||+|.++..+    ++.+|+++|+|+              .++.++.+|+.+..
T Consensus       235 RpeTE~LVe~aL~~l-~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~  313 (423)
T PRK14966        235 RPETEHLVEAVLARL-PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTD  313 (423)
T ss_pred             CccHHHHHHHhhhcc-CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccc
Confidence            333455555554322 23569999999999998776    356999999998              25778888885533


Q ss_pred             C-CCCceeeEeecc
Q psy10644        163 L-KPYSVDVAVFCL  175 (196)
Q Consensus       163 ~-~~~sfD~Vi~~~  175 (196)
                      + ..++||+|+++-
T Consensus       314 l~~~~~FDLIVSNP  327 (423)
T PRK14966        314 MPSEGKWDIIVSNP  327 (423)
T ss_pred             cccCCCccEEEECC
Confidence            3 246899999954

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=98.65  E-value=4.5e-08  Score=80.33  Aligned_cols=87  Identities=21%  Similarity=0.247  Sum_probs=54.7

Q ss_pred             HHHHHHhhcCCCCCEEEEEcCCCchhHhhc--cCC-eEEEEeCCCCCceEE-----EecC---CCCCCCCCceeeEeecc
Q psy10644        107 IIKSIQERESKGRLVIADLGCGEAKLAAEL--TQH-KVHSLDLVALNERVT-----SCDM---TRTPLKPYSVDVAVFCL  175 (196)
Q Consensus       107 ~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l--~~~-~v~giDls~~~~~~~-----~~d~---~~lp~~~~sfD~Vi~~~  175 (196)
                      .++.+.... .++.+|||+|||+|.++..+  .+. +|+|+|+++..+...     ..++   ..++..+.+||+|+++.
T Consensus       109 ~l~~l~~~~-~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~~fD~Vvani  187 (250)
T PRK00517        109 CLEALEKLV-LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDLKADVIVANI  187 (250)
T ss_pred             HHHHHHhhc-CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCCCcCEEEEcC
Confidence            344444322 34789999999999987766  233 699999999211100     0001   11222223799999865


Q ss_pred             cccccCHHHHHHHHHHhccCC
Q psy10644        176 SLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       176 ~lh~~d~~~~l~e~~rvLkpg  196 (196)
                      ..+  ....++.++.++||||
T Consensus       188 ~~~--~~~~l~~~~~~~Lkpg  206 (250)
T PRK00517        188 LAN--PLLELAPDLARLLKPG  206 (250)
T ss_pred             cHH--HHHHHHHHHHHhcCCC
Confidence            432  2467899999999997

>KOG2940|consensus

Probab=98.65  E-value=5.1e-08  Score=78.33  Aligned_cols=78  Identities=24%  Similarity=0.217  Sum_probs=66.8

Q ss_pred             CCEEEEEcCCCchhHhhccCC---eEEEEeCCC-----------CC--ceEEEecCCCCCCCCCceeeEeeccccccc-C
Q psy10644        119 RLVIADLGCGEAKLAAELTQH---KVHSLDLVA-----------LN--ERVTSCDMTRTPLKPYSVDVAVFCLSLMGT-D  181 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l~~~---~v~giDls~-----------~~--~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~~-d  181 (196)
                      ...++|||||-|.+.+.+.+.   +++-+|.|.           +.  ....+.|-+.++|.+++||+|++++++||+ |
T Consensus        73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW~Nd  152 (325)
T KOG2940|consen   73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHWTND  152 (325)
T ss_pred             CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhhhcc
Confidence            457999999999999999332   778888886           22  345677888899999999999999999999 8


Q ss_pred             HHHHHHHHHHhccCC
Q psy10644        182 LAACIKEANRILKLG  196 (196)
Q Consensus       182 ~~~~l~e~~rvLkpg  196 (196)
                      .+..+.++...|||+
T Consensus       153 LPg~m~~ck~~lKPD  167 (325)
T KOG2940|consen  153 LPGSMIQCKLALKPD  167 (325)
T ss_pred             CchHHHHHHHhcCCC
Confidence            999999999999995

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=98.65  E-value=6.1e-08  Score=79.13  Aligned_cols=78  Identities=26%  Similarity=0.328  Sum_probs=62.6

Q ss_pred             CCEEEEEcCCCchhHhhc----cCCeEEEEeCCC----------------CCceEEEecCCCCC--CCCCceeeEeeccc
Q psy10644        119 RLVIADLGCGEAKLAAEL----TQHKVHSLDLVA----------------LNERVTSCDMTRTP--LKPYSVDVAVFCLS  176 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l----~~~~v~giDls~----------------~~~~~~~~d~~~lp--~~~~sfD~Vi~~~~  176 (196)
                      ..+|||||||+|.++..+    ...+|++||+.+                .++.++..|+.++.  ....+||+|+|+--
T Consensus        45 ~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPP  124 (248)
T COG4123          45 KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNPP  124 (248)
T ss_pred             CCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCCC
Confidence            789999999999998888    236999999998                47899999997753  44557999998632


Q ss_pred             ---------------c-ccc---CHHHHHHHHHHhccCC
Q psy10644        177 ---------------L-MGT---DLAACIKEANRILKLG  196 (196)
Q Consensus       177 ---------------l-h~~---d~~~~l~e~~rvLkpg  196 (196)
                                     + |++   +.+.+++.+.++||||
T Consensus       125 yf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~  163 (248)
T COG4123         125 YFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPG  163 (248)
T ss_pred             CCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCC
Confidence                           2 222   6888999999999986

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=98.65  E-value=1.6e-07  Score=73.32  Aligned_cols=82  Identities=18%  Similarity=0.175  Sum_probs=64.2

Q ss_pred             HHhhcCCCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC---------------CCceEEEecCCC-CCCCCCceee
Q psy10644        111 IQERESKGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA---------------LNERVTSCDMTR-TPLKPYSVDV  170 (196)
Q Consensus       111 l~~~~~~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~---------------~~~~~~~~d~~~-lp~~~~sfD~  170 (196)
                      |..+.+.++.+++|||||+|.++..+    +.++|+++|-++               .|+.++.+++-. ++- ..++|.
T Consensus        27 ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~-~~~~da  105 (187)
T COG2242          27 LSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPD-LPSPDA  105 (187)
T ss_pred             HHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcC-CCCCCE
Confidence            34456677899999999999997776    567999999877               588888888744 332 227999


Q ss_pred             EeecccccccCHHHHHHHHHHhccCC
Q psy10644        171 AVFCLSLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       171 Vi~~~~lh~~d~~~~l~e~~rvLkpg  196 (196)
                      |+..-.   -+.+..|+.+...||||
T Consensus       106 iFIGGg---~~i~~ile~~~~~l~~g  128 (187)
T COG2242         106 IFIGGG---GNIEEILEAAWERLKPG  128 (187)
T ss_pred             EEECCC---CCHHHHHHHHHHHcCcC
Confidence            988776   46788888888888886

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.64  E-value=1.8e-07  Score=79.57  Aligned_cols=77  Identities=17%  Similarity=0.052  Sum_probs=56.7

Q ss_pred             cCCCCCEEEEEcCCCchhHhhcc-----CCeEEEEeCCC---------------CCceEEEecCCCCCCCCCceeeEeec
Q psy10644        115 ESKGRLVIADLGCGEAKLAAELT-----QHKVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDVAVFC  174 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l~-----~~~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~  174 (196)
                      ...++.+|||||||+|.++..+.     ...|+++|+++               .++.++.+|....+...+.||+|++.
T Consensus        77 ~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~  156 (322)
T PRK13943         77 GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVT  156 (322)
T ss_pred             CCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEEC
Confidence            44457899999999999987772     23699999998               25778888876655555789999988


Q ss_pred             ccccccCHHHHHHHHHHhccCC
Q psy10644        175 LSLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       175 ~~lh~~d~~~~l~e~~rvLkpg  196 (196)
                      ..++.     ....+.+.|+||
T Consensus       157 ~g~~~-----ip~~~~~~Lkpg  173 (322)
T PRK13943        157 VGVDE-----VPETWFTQLKEG  173 (322)
T ss_pred             CchHH-----hHHHHHHhcCCC
Confidence            66532     223466788876

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=98.63  E-value=1.4e-07  Score=78.65  Aligned_cols=80  Identities=26%  Similarity=0.312  Sum_probs=59.8

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC---------------CCceEEEecCCCCCCCCCceeeEeecc
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDVAVFCL  175 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~  175 (196)
                      +...+.+|||+|||.|.++..+    +..+|+-+|++.               .+..+...|+.. +.++ +||+|+++-
T Consensus       155 ~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~-~v~~-kfd~IisNP  232 (300)
T COG2813         155 PPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYE-PVEG-KFDLIISNP  232 (300)
T ss_pred             CccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccc-cccc-cccEEEeCC
Confidence            3333559999999999998888    456999999998               122355555533 4445 999999999


Q ss_pred             cccc-cC-----HHHHHHHHHHhccCC
Q psy10644        176 SLMG-TD-----LAACIKEANRILKLG  196 (196)
Q Consensus       176 ~lh~-~d-----~~~~l~e~~rvLkpg  196 (196)
                      -+|- .+     -.++|+++.+.|++|
T Consensus       233 Pfh~G~~v~~~~~~~~i~~A~~~L~~g  259 (300)
T COG2813         233 PFHAGKAVVHSLAQEIIAAAARHLKPG  259 (300)
T ss_pred             CccCCcchhHHHHHHHHHHHHHhhccC
Confidence            9983 22     247999999999987

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=98.63  E-value=1.1e-07  Score=77.81  Aligned_cols=79  Identities=18%  Similarity=0.223  Sum_probs=63.3

Q ss_pred             CCCEEEEEcCCCchhHhhccC--CeEEEEeCCC------CCceEEEecCCCCCCCCCceeeEeecccc-cccCHHHHHHH
Q psy10644        118 GRLVIADLGCGEAKLAAELTQ--HKVHSLDLVA------LNERVTSCDMTRTPLKPYSVDVAVFCLSL-MGTDLAACIKE  188 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l~~--~~v~giDls~------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l-h~~d~~~~l~e  188 (196)
                      ...++||||+|.|..+..+.+  .+|++.+.|+      ..-.+.+.+..++.-.+..||+|.|.++| .+.+|..+|++
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~kg~~vl~~~~w~~~~~~fDvIscLNvLDRc~~P~~LL~~  173 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSKKGFTVLDIDDWQQTDFKFDVISCLNVLDRCDRPLTLLRD  173 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHhCCCeEEehhhhhccCCceEEEeehhhhhccCCHHHHHHH
Confidence            356899999999999999944  3899999999      12233444554554446789999999999 78899999999


Q ss_pred             HHHhccCC
Q psy10644        189 ANRILKLG  196 (196)
Q Consensus       189 ~~rvLkpg  196 (196)
                      +++.|+|+
T Consensus       174 i~~~l~p~  181 (265)
T PF05219_consen  174 IRRALKPN  181 (265)
T ss_pred             HHHHhCCC
Confidence            99999985

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PRK00811 spermidine synthase; Provisional

Probab=98.63  E-value=1.5e-07  Score=78.75  Aligned_cols=78  Identities=15%  Similarity=0.106  Sum_probs=58.9

Q ss_pred             CCEEEEEcCCCchhHhhcc----CCeEEEEeCCC--------------------CCceEEEecCCC-CCCCCCceeeEee
Q psy10644        119 RLVIADLGCGEAKLAAELT----QHKVHSLDLVA--------------------LNERVTSCDMTR-TPLKPYSVDVAVF  173 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l~----~~~v~giDls~--------------------~~~~~~~~d~~~-lp~~~~sfD~Vi~  173 (196)
                      ..+||+||||+|.+++.+.    ..+|+++|+++                    ++++++.+|... +....+.||+|++
T Consensus        77 p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~  156 (283)
T PRK00811         77 PKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVIIV  156 (283)
T ss_pred             CCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEEE
Confidence            5689999999999998872    24899999998                    245778888754 3334678999998


Q ss_pred             ccccc-cc----CHHHHHHHHHHhccCC
Q psy10644        174 CLSLM-GT----DLAACIKEANRILKLG  196 (196)
Q Consensus       174 ~~~lh-~~----d~~~~l~e~~rvLkpg  196 (196)
                      ...-. ..    -...+++.++++|+||
T Consensus       157 D~~dp~~~~~~l~t~ef~~~~~~~L~~g  184 (283)
T PRK00811        157 DSTDPVGPAEGLFTKEFYENCKRALKED  184 (283)
T ss_pred             CCCCCCCchhhhhHHHHHHHHHHhcCCC
Confidence            65432 22    2367899999999987

>PHA03411 putative methyltransferase; Provisional

Probab=98.62  E-value=1.6e-07  Score=77.85  Aligned_cols=59  Identities=15%  Similarity=0.120  Sum_probs=48.5

Q ss_pred             CCEEEEEcCCCchhHhhc----cCCeEEEEeCCC----------CCceEEEecCCCCCCCCCceeeEeeccccc
Q psy10644        119 RLVIADLGCGEAKLAAEL----TQHKVHSLDLVA----------LNERVTSCDMTRTPLKPYSVDVAVFCLSLM  178 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l----~~~~v~giDls~----------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh  178 (196)
                      ..+|||+|||+|.++..+    .+.+|+++|+++          .++.++.+|+..+.. +.+||+|++.-.++
T Consensus        65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~-~~kFDlIIsNPPF~  137 (279)
T PHA03411         65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFES-NEKFDVVISNPPFG  137 (279)
T ss_pred             CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcc-cCCCcEEEEcCCcc
Confidence            568999999999997766    246999999999          367889999987653 56899999987774

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=98.60  E-value=4.3e-07  Score=74.70  Aligned_cols=78  Identities=26%  Similarity=0.330  Sum_probs=55.7

Q ss_pred             CCEEEEEcCCCchhHhhc----cCCeEEEEeCCC------------CCceEEEecCCC-CCC-CCCceeeEeeccccc--
Q psy10644        119 RLVIADLGCGEAKLAAEL----TQHKVHSLDLVA------------LNERVTSCDMTR-TPL-KPYSVDVAVFCLSLM--  178 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l----~~~~v~giDls~------------~~~~~~~~d~~~-lp~-~~~sfD~Vi~~~~lh--  178 (196)
                      ..+|||+|||+|.++..+    .+.+|+++|+++            .+..++.+|+.+ ++- ..+.||+|+++--..  
T Consensus        87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~  166 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVPT  166 (251)
T ss_pred             CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCCc
Confidence            458999999999998776    345899999998            235788888754 221 135799999864221  


Q ss_pred             -------------c--------cC----HHHHHHHHHHhccCC
Q psy10644        179 -------------G--------TD----LAACIKEANRILKLG  196 (196)
Q Consensus       179 -------------~--------~d----~~~~l~e~~rvLkpg  196 (196)
                                   .        .|    ...++..+.++||||
T Consensus       167 ~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~g  209 (251)
T TIGR03704       167 DAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPG  209 (251)
T ss_pred             hhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCC
Confidence                         0        01    347788888999986

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=98.59  E-value=1.3e-07  Score=79.08  Aligned_cols=85  Identities=21%  Similarity=0.242  Sum_probs=55.6

Q ss_pred             HHHHHhhcCCCCCEEEEEcCCCchhHhhc--cCC-eEEEEeCCC------------CCce----EEEecCCCCCCCCCce
Q psy10644        108 IKSIQERESKGRLVIADLGCGEAKLAAEL--TQH-KVHSLDLVA------------LNER----VTSCDMTRTPLKPYSV  168 (196)
Q Consensus       108 ~~~l~~~~~~~~~~ILDlGCG~G~~a~~l--~~~-~v~giDls~------------~~~~----~~~~d~~~lp~~~~sf  168 (196)
                      +++|..+. .++.+|||+|||+|.++...  .|+ +|+|+|+.|            .++.    ....+.... ...+.|
T Consensus       153 L~~Le~~~-~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~-~~~~~~  230 (300)
T COG2264         153 LEALEKLL-KKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEV-PENGPF  230 (300)
T ss_pred             HHHHHHhh-cCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhh-cccCcc
Confidence            34454433 35889999999999997766  444 799999999            1222    111111111 123699


Q ss_pred             eeEeecccccccCHHHHHHHHHHhccCC
Q psy10644        169 DVAVFCLSLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       169 D~Vi~~~~lh~~d~~~~l~e~~rvLkpg  196 (196)
                      |+|+++-.-..  ...+..++.+.||||
T Consensus       231 DvIVANILA~v--l~~La~~~~~~lkpg  256 (300)
T COG2264         231 DVIVANILAEV--LVELAPDIKRLLKPG  256 (300)
T ss_pred             cEEEehhhHHH--HHHHHHHHHHHcCCC
Confidence            99998763232  247888889999986

>PHA03412 putative methyltransferase; Provisional

Probab=98.55  E-value=1.6e-07  Score=76.20  Aligned_cols=77  Identities=18%  Similarity=0.217  Sum_probs=59.6

Q ss_pred             CCEEEEEcCCCchhHhhcc-------CCeEEEEeCCC----------CCceEEEecCCCCCCCCCceeeEeeccccc---
Q psy10644        119 RLVIADLGCGEAKLAAELT-------QHKVHSLDLVA----------LNERVTSCDMTRTPLKPYSVDVAVFCLSLM---  178 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l~-------~~~v~giDls~----------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh---  178 (196)
                      +.+|||+|||+|.++..+.       ..+|+++|+++          .++.++.+|+...++ +++||+||++--++   
T Consensus        50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~~  128 (241)
T PHA03412         50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEF-DTLFDMAISNPPFGKIK  128 (241)
T ss_pred             CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccc-cCCccEEEECCCCCCcc
Confidence            5799999999999987651       34899999999          357889999876665 56899999864432   


Q ss_pred             ---------ccC-HHHHHHHHHHhccCC
Q psy10644        179 ---------GTD-LAACIKEANRILKLG  196 (196)
Q Consensus       179 ---------~~d-~~~~l~e~~rvLkpg  196 (196)
                               +.. ...++..+.|++++|
T Consensus       129 ~~d~~ar~~g~~~~~~li~~A~~Ll~~G  156 (241)
T PHA03412        129 TSDFKGKYTGAEFEYKVIERASQIARQG  156 (241)
T ss_pred             ccccCCcccccHHHHHHHHHHHHHcCCC
Confidence                     111 456899999998887

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=98.53  E-value=2.9e-07  Score=81.29  Aligned_cols=82  Identities=17%  Similarity=0.140  Sum_probs=61.6

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC---------------CCceEEEecCCCCC----CCCCceee
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA---------------LNERVTSCDMTRTP----LKPYSVDV  170 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~---------------~~~~~~~~d~~~lp----~~~~sfD~  170 (196)
                      .+.++.+|||+|||+|..+..+     ...+|+++|+++               .++.++.+|+..++    +..++||.
T Consensus       249 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~  328 (434)
T PRK14901        249 DPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDR  328 (434)
T ss_pred             CCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCE
Confidence            3455789999999999887766     235899999998               35788888987765    44678999


Q ss_pred             Eeec---c---cc-cccC----------------HHHHHHHHHHhccCC
Q psy10644        171 AVFC---L---SL-MGTD----------------LAACIKEANRILKLG  196 (196)
Q Consensus       171 Vi~~---~---~l-h~~d----------------~~~~l~e~~rvLkpg  196 (196)
                      |++.   .   ++ +..+                ..++|.++.++||||
T Consensus       329 Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpg  377 (434)
T PRK14901        329 ILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPG  377 (434)
T ss_pred             EEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            9962   2   22 2222                357899999999997

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=98.53  E-value=4.8e-07  Score=79.79  Aligned_cols=82  Identities=18%  Similarity=0.178  Sum_probs=59.7

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC--------------CCceEEEecCCCCC--CCCCceeeEeec
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA--------------LNERVTSCDMTRTP--LKPYSVDVAVFC  174 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~--------------~~~~~~~~d~~~lp--~~~~sfD~Vi~~  174 (196)
                      .+.++.+|||+|||+|..+..+    .+.+|+++|+++              .++.++.+|+..++  +++++||.|++.
T Consensus       241 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D  320 (427)
T PRK10901        241 APQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLD  320 (427)
T ss_pred             CCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEEC
Confidence            3456889999999999988777    235999999999              13577888887654  346789999842


Q ss_pred             c---c---c-ccc---------C-------HHHHHHHHHHhccCC
Q psy10644        175 L---S---L-MGT---------D-------LAACIKEANRILKLG  196 (196)
Q Consensus       175 ~---~---l-h~~---------d-------~~~~l~e~~rvLkpg  196 (196)
                      .   .   + +..         +       ..++|.++.++||||
T Consensus       321 ~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpG  365 (427)
T PRK10901        321 APCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPG  365 (427)
T ss_pred             CCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            2   1   1 110         1       246899999999997

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.53  E-value=4.8e-07  Score=81.39  Aligned_cols=77  Identities=18%  Similarity=0.180  Sum_probs=55.4

Q ss_pred             CCEEEEEcCCCchhHhhc----cCCeEEEEeCCC----------------CCceEEEecCCCCCCCCCceeeEeecccc-
Q psy10644        119 RLVIADLGCGEAKLAAEL----TQHKVHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAVFCLSL-  177 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l----~~~~v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l-  177 (196)
                      ..+|||+|||+|.++..+    ++.+|+++|+|+                .++.++.+|+.. +++.++||+|+++--. 
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPYi  217 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPYI  217 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-hCcCCCccEEEECCCCC
Confidence            468999999999998766    456999999998                146677788643 3345689999984211 


Q ss_pred             --------------c-------c-c----CHHHHHHHHHHhccCC
Q psy10644        178 --------------M-------G-T----DLAACIKEANRILKLG  196 (196)
Q Consensus       178 --------------h-------~-~----d~~~~l~e~~rvLkpg  196 (196)
                                    |       + .    .+..++.++.++|+||
T Consensus       218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~g  262 (506)
T PRK01544        218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPN  262 (506)
T ss_pred             CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCC
Confidence                          1       0 0    1345678888999986

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=98.52  E-value=2e-07  Score=79.48  Aligned_cols=79  Identities=19%  Similarity=0.246  Sum_probs=52.9

Q ss_pred             CCCEEEEEcCCCchh-Hhhc--cCCeEEEEeCCC-------------------------CCceEEEecCCC------CCC
Q psy10644        118 GRLVIADLGCGEAKL-AAEL--TQHKVHSLDLVA-------------------------LNERVTSCDMTR------TPL  163 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~-a~~l--~~~~v~giDls~-------------------------~~~~~~~~d~~~------lp~  163 (196)
                      ++.+|||||||-|.- ..+.  .-..++|+|++.                         -...++.+|...      ++.
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~  141 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP  141 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred             CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence            478999999997764 4444  234999999998                         123456666642      222


Q ss_pred             CCCceeeEeeccccccc-----CHHHHHHHHHHhccCC
Q psy10644        164 KPYSVDVAVFCLSLMGT-----DLAACIKEANRILKLG  196 (196)
Q Consensus       164 ~~~sfD~Vi~~~~lh~~-----d~~~~l~e~~rvLkpg  196 (196)
                      +...||+|-|.++||+.     ....+|+.+.+.||||
T Consensus       142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~G  179 (331)
T PF03291_consen  142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPG  179 (331)
T ss_dssp             TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEE
T ss_pred             cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCC
Confidence            23599999999999854     3556899999999997

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=98.51  E-value=5.3e-07  Score=75.73  Aligned_cols=86  Identities=21%  Similarity=0.249  Sum_probs=53.0

Q ss_pred             HHHHHHHhhcCCCCCEEEEEcCCCchhHhhc--cC-CeEEEEeCCC------------C--CceEEEecCCCCCCCCCce
Q psy10644        106 IIIKSIQERESKGRLVIADLGCGEAKLAAEL--TQ-HKVHSLDLVA------------L--NERVTSCDMTRTPLKPYSV  168 (196)
Q Consensus       106 ~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l--~~-~~v~giDls~------------~--~~~~~~~d~~~lp~~~~sf  168 (196)
                      ..++.|.... .++.+|||+|||+|.++...  .| .+|+++|+++            .  ...+......  ....+.|
T Consensus       150 lcl~~l~~~~-~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~--~~~~~~~  226 (295)
T PF06325_consen  150 LCLELLEKYV-KPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSE--DLVEGKF  226 (295)
T ss_dssp             HHHHHHHHHS-STTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTS--CTCCS-E
T ss_pred             HHHHHHHHhc-cCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEec--ccccccC
Confidence            3445565543 35679999999999886655  34 4899999999            1  1133332222  2335899


Q ss_pred             eeEeecccccccCHHHHHHHHHHhccCC
Q psy10644        169 DVAVFCLSLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       169 D~Vi~~~~lh~~d~~~~l~e~~rvLkpg  196 (196)
                      |+|+++-....  ...++..+.++|+||
T Consensus       227 dlvvANI~~~v--L~~l~~~~~~~l~~~  252 (295)
T PF06325_consen  227 DLVVANILADV--LLELAPDIASLLKPG  252 (295)
T ss_dssp             EEEEEES-HHH--HHHHHHHCHHHEEEE
T ss_pred             CEEEECCCHHH--HHHHHHHHHHhhCCC
Confidence            99998765432  244666677777764

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=98.51  E-value=5.2e-07  Score=79.99  Aligned_cols=80  Identities=14%  Similarity=0.147  Sum_probs=58.6

Q ss_pred             CCCCCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC---------------CCceEEEecCCCCCCCCCceeeEee--
Q psy10644        116 SKGRLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDVAVF--  173 (196)
Q Consensus       116 ~~~~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~--  173 (196)
                      +.++.+|||+|||+|..+..+     .+.+|+++|+++               .++.++.+|+..++ ++++||+|++  
T Consensus       248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~  326 (445)
T PRK14904        248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEEQPDAILLDA  326 (445)
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcC
Confidence            345789999999999876555     245899999999               25678888887765 5678999986  


Q ss_pred             -cccc-c---cc----------------CHHHHHHHHHHhccCC
Q psy10644        174 -CLSL-M---GT----------------DLAACIKEANRILKLG  196 (196)
Q Consensus       174 -~~~l-h---~~----------------d~~~~l~e~~rvLkpg  196 (196)
                       |... +   ..                ....+|.++.++||||
T Consensus       327 Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpg  370 (445)
T PRK14904        327 PCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPG  370 (445)
T ss_pred             CCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence             2221 1   10                1236899999999997

>PRK04457 spermidine synthase; Provisional

Probab=98.50  E-value=3.2e-07  Score=75.88  Aligned_cols=77  Identities=16%  Similarity=0.178  Sum_probs=58.2

Q ss_pred             CCEEEEEcCCCchhHhhc----cCCeEEEEeCCC----------------CCceEEEecCCC-CCCCCCceeeEeecccc
Q psy10644        119 RLVIADLGCGEAKLAAEL----TQHKVHSLDLVA----------------LNERVTSCDMTR-TPLKPYSVDVAVFCLSL  177 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l----~~~~v~giDls~----------------~~~~~~~~d~~~-lp~~~~sfD~Vi~~~~l  177 (196)
                      ..+|||||||+|.++..+    +..+|+++|+++                .++.++.+|... +.-..++||+|++. .+
T Consensus        67 ~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D-~~  145 (262)
T PRK04457         67 PQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVD-GF  145 (262)
T ss_pred             CCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEe-CC
Confidence            568999999999998877    456999999988                346788888744 23234689999864 23


Q ss_pred             ccc------CHHHHHHHHHHhccCC
Q psy10644        178 MGT------DLAACIKEANRILKLG  196 (196)
Q Consensus       178 h~~------d~~~~l~e~~rvLkpg  196 (196)
                      +..      ....+++++.++|+||
T Consensus       146 ~~~~~~~~l~t~efl~~~~~~L~pg  170 (262)
T PRK04457        146 DGEGIIDALCTQPFFDDCRNALSSD  170 (262)
T ss_pred             CCCCCccccCcHHHHHHHHHhcCCC
Confidence            211      3479999999999997

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.49  E-value=1.3e-06  Score=77.45  Aligned_cols=114  Identities=21%  Similarity=0.328  Sum_probs=70.9

Q ss_pred             hHHHHHHhhhCHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHhhcC-CCCCEEEEEcCCCchhHhhc--c------CCeE
Q psy10644         71 SEESKDFFTEDRESFEAYHEGFKKQVTQWPINPVDIIIKSIQERES-KGRLVIADLGCGEAKLAAEL--T------QHKV  141 (196)
Q Consensus        71 ~~~~~~~~~~~~~~f~~y~~~y~~~~~~w~~~~~~~~~~~l~~~~~-~~~~~ILDlGCG~G~~a~~l--~------~~~v  141 (196)
                      .....+.|.+++..|+.|...-.           ..+.+....... .++..|||||||+|-++...  .      ..+|
T Consensus       149 ~s~tYe~fE~D~vKY~~Ye~AI~-----------~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~V  217 (448)
T PF05185_consen  149 ESQTYEVFEKDPVKYDQYERAIE-----------EALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKV  217 (448)
T ss_dssp             -HHHHHHHCC-HHHHHHHHHHHH-----------HHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEE
T ss_pred             ccccHhhHhcCHHHHHHHHHHHH-----------HHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEE
Confidence            44556667777777777754431           122222221110 12568999999999886544  1      2499


Q ss_pred             EEEeCCC----------------CCceEEEecCCCCCCCCCceeeEeecccc-cc--cCHHHHHHHHHHhccCC
Q psy10644        142 HSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAVFCLSL-MG--TDLAACIKEANRILKLG  196 (196)
Q Consensus       142 ~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l-h~--~d~~~~l~e~~rvLkpg  196 (196)
                      ++++-++                ..+.++.+|++++.+++ .+|+||+-..= .+  .-...+|..+.|.||||
T Consensus       218 yAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpe-kvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~  290 (448)
T PF05185_consen  218 YAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPE-KVDIIVSELLGSFGDNELSPECLDAADRFLKPD  290 (448)
T ss_dssp             EEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS--EEEEEE---BTTBTTTSHHHHHHHGGGGEEEE
T ss_pred             EEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCC-ceeEEEEeccCCccccccCHHHHHHHHhhcCCC
Confidence            9999988                47899999999998765 89999985432 22  24567888889999985

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=98.46  E-value=7.5e-07  Score=78.67  Aligned_cols=82  Identities=18%  Similarity=0.219  Sum_probs=60.1

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC---------------CCceEEEecCCCCC-CCCCceeeEee
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA---------------LNERVTSCDMTRTP-LKPYSVDVAVF  173 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~---------------~~~~~~~~d~~~lp-~~~~sfD~Vi~  173 (196)
                      .+.++.+|||+|||+|..+..+     .+.+|+++|+++               .++.++.+|+..++ +.+++||.|++
T Consensus       234 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~  313 (431)
T PRK14903        234 ELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILV  313 (431)
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEE
Confidence            3445789999999999876655     256999999998               24678888887765 44678999986


Q ss_pred             ---cccc-c---cc----------------CHHHHHHHHHHhccCC
Q psy10644        174 ---CLSL-M---GT----------------DLAACIKEANRILKLG  196 (196)
Q Consensus       174 ---~~~l-h---~~----------------d~~~~l~e~~rvLkpg  196 (196)
                         |..+ .   ..                ...++|.++.++||||
T Consensus       314 DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpG  359 (431)
T PRK14903        314 DAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKG  359 (431)
T ss_pred             CCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence               2222 1   11                1256799999999997

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=98.43  E-value=6.5e-07  Score=70.96  Aligned_cols=78  Identities=22%  Similarity=0.299  Sum_probs=58.7

Q ss_pred             CCEEEEEcCCCchhHhhc----cCCeEEEEeCCC---------------CCceEEEecCCC-CC--CCCCceeeEeeccc
Q psy10644        119 RLVIADLGCGEAKLAAEL----TQHKVHSLDLVA---------------LNERVTSCDMTR-TP--LKPYSVDVAVFCLS  176 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l----~~~~v~giDls~---------------~~~~~~~~d~~~-lp--~~~~sfD~Vi~~~~  176 (196)
                      ...+||||||.|.+...+    +...++|+|+..               .|+.++.+|+.. ++  ++++++|.|+..+-
T Consensus        18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP   97 (195)
T PF02390_consen   18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP   97 (195)
T ss_dssp             CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred             CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence            348999999999997777    678999999998               699999999876 32  56789999888764


Q ss_pred             c-c-----cc---CHHHHHHHHHHhccCC
Q psy10644        177 L-M-----GT---DLAACIKEANRILKLG  196 (196)
Q Consensus       177 l-h-----~~---d~~~~l~e~~rvLkpg  196 (196)
                      = |     ..   --..++.+++++|+||
T Consensus        98 DPWpK~rH~krRl~~~~fl~~~~~~L~~g  126 (195)
T PF02390_consen   98 DPWPKKRHHKRRLVNPEFLELLARVLKPG  126 (195)
T ss_dssp             ----SGGGGGGSTTSHHHHHHHHHHEEEE
T ss_pred             CCCcccchhhhhcCCchHHHHHHHHcCCC
Confidence            3 2     11   2468999999999986

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>KOG1975|consensus

Probab=98.43  E-value=6.7e-07  Score=75.04  Aligned_cols=80  Identities=16%  Similarity=0.225  Sum_probs=61.6

Q ss_pred             CCCCEEEEEcCCCchhHhhc--cC-CeEEEEeCCC---------------------CCceEEEecCC------CCCCCCC
Q psy10644        117 KGRLVIADLGCGEAKLAAEL--TQ-HKVHSLDLVA---------------------LNERVTSCDMT------RTPLKPY  166 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l--~~-~~v~giDls~---------------------~~~~~~~~d~~------~lp~~~~  166 (196)
                      +++..++|||||-|.-+...  .+ ..++|+|++.                     -.+.|+.+|..      .+++++.
T Consensus       116 ~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp  195 (389)
T KOG1975|consen  116 KRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP  195 (389)
T ss_pred             ccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence            44678999999998776655  23 3899999998                     13578888863      2455566


Q ss_pred             ceeeEeeccccccc-----CHHHHHHHHHHhccCC
Q psy10644        167 SVDVAVFCLSLMGT-----DLAACIKEANRILKLG  196 (196)
Q Consensus       167 sfD~Vi~~~~lh~~-----d~~~~l~e~~rvLkpg  196 (196)
                      +||+|-|-+++|+.     ...-+|+.+.+.||||
T Consensus       196 ~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpG  230 (389)
T KOG1975|consen  196 RFDIVSCQFAFHYAFETEESARIALRNVAKCLKPG  230 (389)
T ss_pred             CcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCC
Confidence            69999999999843     3556899999999998

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=98.43  E-value=1.5e-06  Score=67.54  Aligned_cols=80  Identities=20%  Similarity=0.154  Sum_probs=50.9

Q ss_pred             CCCCEEEEEcCCCchhHhhc--c--CCeEEEEeCCC-----------------CCceEEEecCCC-C---CCCCCceeeE
Q psy10644        117 KGRLVIADLGCGEAKLAAEL--T--QHKVHSLDLVA-----------------LNERVTSCDMTR-T---PLKPYSVDVA  171 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l--~--~~~v~giDls~-----------------~~~~~~~~d~~~-l---p~~~~sfD~V  171 (196)
                      ..+.+|||||||+|..+..+  .  ..+|+..|..+                 .++.+...|-.+ .   .+....||+|
T Consensus        44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~I  123 (173)
T PF10294_consen   44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDVI  123 (173)
T ss_dssp             TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSEE
T ss_pred             cCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCEE
Confidence            45789999999999776666  3  56999999888                 123444444322 1   1245689999


Q ss_pred             eeccccccc-CHHHHHHHHHHhccCC
Q psy10644        172 VFCLSLMGT-DLAACIKEANRILKLG  196 (196)
Q Consensus       172 i~~~~lh~~-d~~~~l~e~~rvLkpg  196 (196)
                      +++.+++.. ..+.+++-+.++|+|+
T Consensus       124 lasDv~Y~~~~~~~L~~tl~~ll~~~  149 (173)
T PF10294_consen  124 LASDVLYDEELFEPLVRTLKRLLKPN  149 (173)
T ss_dssp             EEES--S-GGGHHHHHHHHHHHBTT-
T ss_pred             EEecccchHHHHHHHHHHHHHHhCCC
Confidence            999999755 7888999999999875

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.43  E-value=9e-07  Score=72.98  Aligned_cols=61  Identities=21%  Similarity=0.231  Sum_probs=50.3

Q ss_pred             CCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC-------------CCceEEEecCCCCCCCCCceeeEeecccccc
Q psy10644        117 KGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA-------------LNERVTSCDMTRTPLKPYSVDVAVFCLSLMG  179 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~-------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~  179 (196)
                      .++.+|||||||+|.++..+  .+.+|+++|+++             .++.++.+|+..++++  .||.|+++.-.+.
T Consensus        28 ~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~--~~d~Vv~NlPy~i  103 (258)
T PRK14896         28 TDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLP--EFNKVVSNLPYQI  103 (258)
T ss_pred             CCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCch--hceEEEEcCCccc
Confidence            34789999999999999999  456899999997             3688999999888765  4899998876653

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=98.42  E-value=1.4e-06  Score=69.48  Aligned_cols=95  Identities=18%  Similarity=0.247  Sum_probs=71.5

Q ss_pred             ChHHHHHHHHHhhcCC-----CCCEEEEEcCCCchhHhhc-cCCeEEEEeCCCCCceEEEecCCCCCCC---CCceeeEe
Q psy10644        102 NPVDIIIKSIQERESK-----GRLVIADLGCGEAKLAAEL-TQHKVHSLDLVALNERVTSCDMTRTPLK---PYSVDVAV  172 (196)
Q Consensus       102 ~~~~~~~~~l~~~~~~-----~~~~ILDlGCG~G~~a~~l-~~~~v~giDls~~~~~~~~~d~~~lp~~---~~sfD~Vi  172 (196)
                      +.-..++++|......     ...++|||||=....+... .-..|+.||+.+....+.++|.-+.|+|   .+.||+|+
T Consensus        30 dSSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~~~~fdvt~IDLns~~~~I~qqDFm~rplp~~~~e~FdvIs  109 (219)
T PF11968_consen   30 DSSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACSTSGWFDVTRIDLNSQHPGILQQDFMERPLPKNESEKFDVIS  109 (219)
T ss_pred             chhHHHHHHhhhhccccccccccceEEeecccCCCCcccccCceeeEEeecCCCCCCceeeccccCCCCCCcccceeEEE
Confidence            3455667777553221     2369999999866554433 3347999999998899999999887774   67999999


Q ss_pred             eccccc-cc---CHHHHHHHHHHhccCC
Q psy10644        173 FCLSLM-GT---DLAACIKEANRILKLG  196 (196)
Q Consensus       173 ~~~~lh-~~---d~~~~l~e~~rvLkpg  196 (196)
                      ++++|. .+   ...++++.+++.|+|+
T Consensus       110 ~SLVLNfVP~p~~RG~Ml~r~~~fL~~~  137 (219)
T PF11968_consen  110 LSLVLNFVPDPKQRGEMLRRAHKFLKPP  137 (219)
T ss_pred             EEEEEeeCCCHHHHHHHHHHHHHHhCCC
Confidence            999994 33   4567999999999985

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.42  E-value=6.3e-07  Score=74.50  Aligned_cols=63  Identities=17%  Similarity=0.140  Sum_probs=49.3

Q ss_pred             CCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC------------CCceEEEecCCCCCCCCCceeeEeeccccc
Q psy10644        116 SKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA------------LNERVTSCDMTRTPLKPYSVDVAVFCLSLM  178 (196)
Q Consensus       116 ~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh  178 (196)
                      ..++.+|||||||+|.++..+  .+.+|+|+|+++            .++.++.+|+..+++++-.+|.|+++.-.+
T Consensus        40 ~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~vv~NlPY~  116 (272)
T PRK00274         40 PQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPLKVVANLPYN  116 (272)
T ss_pred             CCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcceEEEeCCcc
Confidence            345779999999999999888  345899999998            367899999988876543357888775543

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=98.42  E-value=9.3e-07  Score=73.16  Aligned_cols=82  Identities=16%  Similarity=0.108  Sum_probs=59.5

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC---------------CCceEEEecCCCCCCCCCceeeEeec
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDVAVFC  174 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~  174 (196)
                      .+.++.+|||+|||+|..+..+     ....|+++|+++               .++.++..|...++...+.||+|++-
T Consensus        68 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D  147 (264)
T TIGR00446        68 EPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLD  147 (264)
T ss_pred             CCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEc
Confidence            3345789999999999987666     135899999998               35677888877666555679999862


Q ss_pred             c---c---c-ccc----------------CHHHHHHHHHHhccCC
Q psy10644        175 L---S---L-MGT----------------DLAACIKEANRILKLG  196 (196)
Q Consensus       175 ~---~---l-h~~----------------d~~~~l~e~~rvLkpg  196 (196)
                      -   .   + +..                ...++|.++.++||||
T Consensus       148 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpg  192 (264)
T TIGR00446       148 APCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPG  192 (264)
T ss_pred             CCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            1   1   1 111                1245899999999997

>KOG1271|consensus

Probab=98.41  E-value=6.4e-07  Score=69.69  Aligned_cols=76  Identities=24%  Similarity=0.318  Sum_probs=58.3

Q ss_pred             EEEEEcCCCchhHhhcc----CCeEEEEeCCC---------------CC-ceEEEecCCCCCCCCCceeeEeecccc---
Q psy10644        121 VIADLGCGEAKLAAELT----QHKVHSLDLVA---------------LN-ERVTSCDMTRTPLKPYSVDVAVFCLSL---  177 (196)
Q Consensus       121 ~ILDlGCG~G~~a~~l~----~~~v~giDls~---------------~~-~~~~~~d~~~lp~~~~sfD~Vi~~~~l---  177 (196)
                      +|||+|||.|.+...|.    ...++|+|.|+               .+ ++|.+.|+..-.+..+.||+|+--..+   
T Consensus        70 ~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DAi  149 (227)
T KOG1271|consen   70 RVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDAI  149 (227)
T ss_pred             ceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceeee
Confidence            89999999999998882    33699999998               23 899999997767778899999854433   


Q ss_pred             --ccc----CHHHHHHHHHHhccCC
Q psy10644        178 --MGT----DLAACIKEANRILKLG  196 (196)
Q Consensus       178 --h~~----d~~~~l~e~~rvLkpg  196 (196)
                        |..    .+.-.+..+.++|+||
T Consensus       150 sLs~d~~~~r~~~Y~d~v~~ll~~~  174 (227)
T KOG1271|consen  150 SLSPDGPVGRLVVYLDSVEKLLSPG  174 (227)
T ss_pred             ecCCCCcccceeeehhhHhhccCCC
Confidence              322    2345677888888876

>KOG1499|consensus

Probab=98.40  E-value=1.1e-06  Score=74.53  Aligned_cols=59  Identities=20%  Similarity=0.173  Sum_probs=48.7

Q ss_pred             CCEEEEEcCCCchhHhhc--cC-CeEEEEeCCC---------------CCceEEEecCCCCCCCCCceeeEeecccc
Q psy10644        119 RLVIADLGCGEAKLAAEL--TQ-HKVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDVAVFCLSL  177 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l--~~-~~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l  177 (196)
                      +.+|||+|||+|.++...  .| .+|+++|.|.               .-+.++.+.++++.+|...+|+|++-+.=
T Consensus        61 dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMG  137 (346)
T KOG1499|consen   61 DKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMG  137 (346)
T ss_pred             CCEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhh
Confidence            779999999999998777  33 4999999998               24788888898887778899999986543

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.40  E-value=7.6e-07  Score=70.62  Aligned_cols=79  Identities=16%  Similarity=0.151  Sum_probs=52.4

Q ss_pred             CCCEEEEEcCCCchhHhhc-----------c--CCeEEEEeCCC------------------------------------
Q psy10644        118 GRLVIADLGCGEAKLAAEL-----------T--QHKVHSLDLVA------------------------------------  148 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l-----------~--~~~v~giDls~------------------------------------  148 (196)
                      +..+|+-.||++|.=+-.|           .  ..+|+|.|+++                                    
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~  110 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY  110 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence            4689999999999542222           1  24999999998                                    


Q ss_pred             -------CCceEEEecCCCCCCCCCceeeEeeccccccc---CHHHHHHHHHHhccCC
Q psy10644        149 -------LNERVTSCDMTRTPLKPYSVDVAVFCLSLMGT---DLAACIKEANRILKLG  196 (196)
Q Consensus       149 -------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~~---d~~~~l~e~~rvLkpg  196 (196)
                             ..+.|...|+.+.+.+.+.||+|+|.++|.+.   ...++++.+++.|+||
T Consensus       111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pg  168 (196)
T PF01739_consen  111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPG  168 (196)
T ss_dssp             TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEE
T ss_pred             eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCC
Confidence                   37889999987744456899999999999544   4678999999999986

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=98.39  E-value=1.1e-06  Score=77.47  Aligned_cols=82  Identities=16%  Similarity=0.154  Sum_probs=56.9

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC------------CCc--eE--EEecCCCCCC--CCCceeeEe
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA------------LNE--RV--TSCDMTRTPL--KPYSVDVAV  172 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~------------~~~--~~--~~~d~~~lp~--~~~sfD~Vi  172 (196)
                      .+.++.+|||+|||+|..+..+    .+.+|+++|+++            .++  .+  ..+|....+.  ++++||.|+
T Consensus       235 ~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~Vl  314 (426)
T TIGR00563       235 APQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRIL  314 (426)
T ss_pred             CCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEE
Confidence            4456789999999999887666    346999999999            122  23  4445444333  567899998


Q ss_pred             ec---c---ccc-ccC----------------HHHHHHHHHHhccCC
Q psy10644        173 FC---L---SLM-GTD----------------LAACIKEANRILKLG  196 (196)
Q Consensus       173 ~~---~---~lh-~~d----------------~~~~l~e~~rvLkpg  196 (196)
                      +-   .   +++ ..+                ...+|.+++++||||
T Consensus       315 lDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~Lkpg  361 (426)
T TIGR00563       315 LDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTG  361 (426)
T ss_pred             EcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            52   2   232 222                367999999999997

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.38  E-value=1.3e-06  Score=68.31  Aligned_cols=57  Identities=18%  Similarity=0.219  Sum_probs=44.0

Q ss_pred             CCCEEEEEcCCCchhHhhc---cCCeEEEEeCCC--------------CCceEEEecCCCCCCCCCceeeEeecccc
Q psy10644        118 GRLVIADLGCGEAKLAAEL---TQHKVHSLDLVA--------------LNERVTSCDMTRTPLKPYSVDVAVFCLSL  177 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l---~~~~v~giDls~--------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l  177 (196)
                      .+.+|+|+|||||.++...   ..++|+|+|+.+              .++.++++|+..+.   +.+|.|+.+--+
T Consensus        45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~---~~~dtvimNPPF  118 (198)
T COG2263          45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFR---GKFDTVIMNPPF  118 (198)
T ss_pred             CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcC---CccceEEECCCC
Confidence            4668999999999886555   447999999999              36889999998754   456777765433

>TIGR00417 speE spermidine synthase

Probab=98.38  E-value=1.4e-06  Score=72.40  Aligned_cols=78  Identities=13%  Similarity=0.068  Sum_probs=55.5

Q ss_pred             CCEEEEEcCCCchhHhhcc----CCeEEEEeCCC-------------------CCceEEEecCCC-CCCCCCceeeEeec
Q psy10644        119 RLVIADLGCGEAKLAAELT----QHKVHSLDLVA-------------------LNERVTSCDMTR-TPLKPYSVDVAVFC  174 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l~----~~~v~giDls~-------------------~~~~~~~~d~~~-lp~~~~sfD~Vi~~  174 (196)
                      ..+||+||||+|.+++.+.    ..+|+++|+++                   ++++++.+|... +.-.++.||+|++.
T Consensus        73 p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~D  152 (270)
T TIGR00417        73 PKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIVD  152 (270)
T ss_pred             CCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEEe
Confidence            4599999999999987771    34899999997                   134455555432 22225789999986


Q ss_pred             cccc-cc--C--HHHHHHHHHHhccCC
Q psy10644        175 LSLM-GT--D--LAACIKEANRILKLG  196 (196)
Q Consensus       175 ~~lh-~~--d--~~~~l~e~~rvLkpg  196 (196)
                      .... ..  +  ...+++.++++|+||
T Consensus       153 ~~~~~~~~~~l~~~ef~~~~~~~L~pg  179 (270)
T TIGR00417       153 STDPVGPAETLFTKEFYELLKKALNED  179 (270)
T ss_pred             CCCCCCcccchhHHHHHHHHHHHhCCC
Confidence            6532 11  2  568899999999997

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=98.38  E-value=1.6e-06  Score=70.51  Aligned_cols=88  Identities=8%  Similarity=0.075  Sum_probs=62.5

Q ss_pred             HHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC----------------CCceEEEecCCCC-C
Q psy10644        105 DIIIKSIQERESKGRLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA----------------LNERVTSCDMTRT-P  162 (196)
Q Consensus       105 ~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~----------------~~~~~~~~d~~~l-p  162 (196)
                      ..++..+.....  ..+|||||||+|..+..+     ...+|+++|+++                .++.++.+|+.+. +
T Consensus        57 g~~L~~l~~~~~--~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~  134 (234)
T PLN02781         57 GLFLSMLVKIMN--AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALD  134 (234)
T ss_pred             HHHHHHHHHHhC--CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHH
Confidence            445555554443  679999999999865544     246999999998                2577888887542 2


Q ss_pred             -----CCCCceeeEeecccccccCHHHHHHHHHHhccCC
Q psy10644        163 -----LKPYSVDVAVFCLSLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       163 -----~~~~sfD~Vi~~~~lh~~d~~~~l~e~~rvLkpg  196 (196)
                           .+.++||+|++-..  -..+..++.++.++||||
T Consensus       135 ~l~~~~~~~~fD~VfiDa~--k~~y~~~~~~~~~ll~~G  171 (234)
T PLN02781        135 QLLNNDPKPEFDFAFVDAD--KPNYVHFHEQLLKLVKVG  171 (234)
T ss_pred             HHHhCCCCCCCCEEEECCC--HHHHHHHHHHHHHhcCCC
Confidence                 12468999876432  125667899999999997

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=98.37  E-value=1.7e-06  Score=76.73  Aligned_cols=80  Identities=19%  Similarity=0.203  Sum_probs=58.5

Q ss_pred             CCCCCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC---------------CCceEEEecCCCCC--CCCCceeeEee
Q psy10644        116 SKGRLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA---------------LNERVTSCDMTRTP--LKPYSVDVAVF  173 (196)
Q Consensus       116 ~~~~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~---------------~~~~~~~~d~~~lp--~~~~sfD~Vi~  173 (196)
                      ..++.+|||+|||+|..+..+     ...+|+++|+++               .++.++.+|+..++  ++ ++||+|++
T Consensus       248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~  326 (444)
T PRK14902        248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA-EKFDKILV  326 (444)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc-ccCCEEEE
Confidence            345789999999999987766     246999999998               24678888987653  33 78999987


Q ss_pred             ccc---c----ccc---------C-------HHHHHHHHHHhccCC
Q psy10644        174 CLS---L----MGT---------D-------LAACIKEANRILKLG  196 (196)
Q Consensus       174 ~~~---l----h~~---------d-------~~~~l~e~~rvLkpg  196 (196)
                      ..-   +    +..         +       ...+|.++.++||||
T Consensus       327 D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpG  372 (444)
T PRK14902        327 DAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKG  372 (444)
T ss_pred             cCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            321   1    111         1       245799999999997

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=98.36  E-value=1.5e-06  Score=68.97  Aligned_cols=92  Identities=18%  Similarity=0.202  Sum_probs=60.2

Q ss_pred             HHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC---------------CCc-eEEEecCCCC--C
Q psy10644        105 DIIIKSIQERESKGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA---------------LNE-RVTSCDMTRT--P  162 (196)
Q Consensus       105 ~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~---------------~~~-~~~~~d~~~l--p  162 (196)
                      +-|++.|+...+..+.+|||||||||..+..|    +...-.--|..+               .|+ .-+..|+..-  +
T Consensus        12 ~pIl~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~   91 (204)
T PF06080_consen   12 DPILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWP   91 (204)
T ss_pred             hHHHHHHHHHhCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCc
Confidence            44555555443333436999999999887666    333444445444               222 2234455432  2


Q ss_pred             C------CCCceeeEeeccccccc---CHHHHHHHHHHhccCC
Q psy10644        163 L------KPYSVDVAVFCLSLMGT---DLAACIKEANRILKLG  196 (196)
Q Consensus       163 ~------~~~sfD~Vi~~~~lh~~---d~~~~l~e~~rvLkpg  196 (196)
                      .      ..++||+|++..++|..   ..+.+|+.+.++|++|
T Consensus        92 ~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~g  134 (204)
T PF06080_consen   92 WELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPG  134 (204)
T ss_pred             cccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCC
Confidence            2      35689999999999965   5678999999999986

The function of this family is unknown.

>PRK04148 hypothetical protein; Provisional

Probab=98.34  E-value=1.4e-06  Score=64.88  Aligned_cols=73  Identities=19%  Similarity=0.129  Sum_probs=52.7

Q ss_pred             CCCEEEEEcCCCch-hHhhc--cCCeEEEEeCCCC--------CceEEEecCCCCCCC-CCceeeEeecccccccCHHHH
Q psy10644        118 GRLVIADLGCGEAK-LAAEL--TQHKVHSLDLVAL--------NERVTSCDMTRTPLK-PYSVDVAVFCLSLMGTDLAAC  185 (196)
Q Consensus       118 ~~~~ILDlGCG~G~-~a~~l--~~~~v~giDls~~--------~~~~~~~d~~~lp~~-~~sfD~Vi~~~~lh~~d~~~~  185 (196)
                      ++.+|||||||.|. ++..|  .+.+|+++|+++.        .+.++++|+.+-.+. ...+|+|.++.-  ..+....
T Consensus        16 ~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirp--p~el~~~   93 (134)
T PRK04148         16 KNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRP--PRDLQPF   93 (134)
T ss_pred             cCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCC--CHHHHHH
Confidence            45789999999996 88888  6789999999993        568899998764433 466888877653  1144555


Q ss_pred             HHHHHHh
Q psy10644        186 IKEANRI  192 (196)
Q Consensus       186 l~e~~rv  192 (196)
                      +.++.+-
T Consensus        94 ~~~la~~  100 (134)
T PRK04148         94 ILELAKK  100 (134)
T ss_pred             HHHHHHH
Confidence            5555543

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=98.34  E-value=1.5e-06  Score=72.57  Aligned_cols=72  Identities=22%  Similarity=0.320  Sum_probs=45.3

Q ss_pred             CCChHHHHHHHHH-hhcCCCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC------------CC---ceEEEecCC
Q psy10644        100 PINPVDIIIKSIQ-ERESKGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA------------LN---ERVTSCDMT  159 (196)
Q Consensus       100 ~~~~~~~~~~~l~-~~~~~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~------------~~---~~~~~~d~~  159 (196)
                      |......+++.+. ....... +|||||||+|.++..+    +..+|+|+|+|+            .+   +.++..|..
T Consensus        92 Pr~dTe~Lve~~l~~~~~~~~-~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf  170 (280)
T COG2890          92 PRPDTELLVEAALALLLQLDK-RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLF  170 (280)
T ss_pred             cCCchHHHHHHHHHhhhhcCC-cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecc
Confidence            3444455555532 1122112 7999999999998888    345999999999            12   234444432


Q ss_pred             CCCCCCCceeeEeec
Q psy10644        160 RTPLKPYSVDVAVFC  174 (196)
Q Consensus       160 ~lp~~~~sfD~Vi~~  174 (196)
                      . ++. +.||+|+++
T Consensus       171 ~-~~~-~~fDlIVsN  183 (280)
T COG2890         171 E-PLR-GKFDLIVSN  183 (280)
T ss_pred             c-ccC-CceeEEEeC
Confidence            2 232 389999986

>PLN02366 spermidine synthase

Probab=98.31  E-value=3.2e-06  Score=71.55  Aligned_cols=78  Identities=13%  Similarity=0.092  Sum_probs=57.9

Q ss_pred             CCEEEEEcCCCchhHhhcc---C-CeEEEEeCCC-------------------CCceEEEecCCCC--CCCCCceeeEee
Q psy10644        119 RLVIADLGCGEAKLAAELT---Q-HKVHSLDLVA-------------------LNERVTSCDMTRT--PLKPYSVDVAVF  173 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l~---~-~~v~giDls~-------------------~~~~~~~~d~~~l--p~~~~sfD~Vi~  173 (196)
                      ..+||+||||.|.+++.+.   + .+|+.+|+++                   ++++++.+|....  ..+++.||+|++
T Consensus        92 pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi~  171 (308)
T PLN02366         92 PKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAIIV  171 (308)
T ss_pred             CCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEEE
Confidence            5789999999999998882   2 3799999888                   2577888886432  123568999998


Q ss_pred             ccccc-cc----CHHHHHHHHHHhccCC
Q psy10644        174 CLSLM-GT----DLAACIKEANRILKLG  196 (196)
Q Consensus       174 ~~~lh-~~----d~~~~l~e~~rvLkpg  196 (196)
                      -..-. ..    --..+++.++++|+||
T Consensus       172 D~~dp~~~~~~L~t~ef~~~~~~~L~pg  199 (308)
T PLN02366        172 DSSDPVGPAQELFEKPFFESVARALRPG  199 (308)
T ss_pred             cCCCCCCchhhhhHHHHHHHHHHhcCCC
Confidence            55432 22    2357899999999997

>PRK01581 speE spermidine synthase; Validated

Probab=98.29  E-value=2.7e-06  Score=73.19  Aligned_cols=78  Identities=17%  Similarity=0.084  Sum_probs=57.2

Q ss_pred             CCEEEEEcCCCchhHhhcc----CCeEEEEeCCC----------------------CCceEEEecCCC-CCCCCCceeeE
Q psy10644        119 RLVIADLGCGEAKLAAELT----QHKVHSLDLVA----------------------LNERVTSCDMTR-TPLKPYSVDVA  171 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l~----~~~v~giDls~----------------------~~~~~~~~d~~~-lp~~~~sfD~V  171 (196)
                      ..+||+||||+|..++.+.    ..+|+++|+++                      ++++++.+|... +.-..+.||+|
T Consensus       151 PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDVI  230 (374)
T PRK01581        151 PKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDVI  230 (374)
T ss_pred             CCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccEE
Confidence            5699999999999888772    25899999998                      245566777654 34445789999


Q ss_pred             eeccccc----c--cCHHHHHHHHHHhccCC
Q psy10644        172 VFCLSLM----G--TDLAACIKEANRILKLG  196 (196)
Q Consensus       172 i~~~~lh----~--~d~~~~l~e~~rvLkpg  196 (196)
                      ++-..-.    .  .--..+++.+++.|+||
T Consensus       231 IvDl~DP~~~~~~~LyT~EFy~~~~~~LkPg  261 (374)
T PRK01581        231 IIDFPDPATELLSTLYTSELFARIATFLTED  261 (374)
T ss_pred             EEcCCCccccchhhhhHHHHHHHHHHhcCCC
Confidence            9874211    0  12367999999999997

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=98.29  E-value=1.6e-06  Score=69.50  Aligned_cols=64  Identities=19%  Similarity=0.098  Sum_probs=46.4

Q ss_pred             hcCCCCCEEEEEcCCCchhHhhc---cC--CeEEEEeCCC---------------CCceEEEecCCCCCCCCCceeeEee
Q psy10644        114 RESKGRLVIADLGCGEAKLAAEL---TQ--HKVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDVAVF  173 (196)
Q Consensus       114 ~~~~~~~~ILDlGCG~G~~a~~l---~~--~~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~  173 (196)
                      +..+++.+|||||||+|.++..|   .+  ..|+++|..+               .|+.++.+|...---..+.||.|++
T Consensus        68 L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~apfD~I~v  147 (209)
T PF01135_consen   68 LDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEEAPFDRIIV  147 (209)
T ss_dssp             TTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG-SEEEEEE
T ss_pred             HhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccCCCcCEEEE
Confidence            34566899999999999998877   22  3799999998               3788999997553234578999999


Q ss_pred             cccc
Q psy10644        174 CLSL  177 (196)
Q Consensus       174 ~~~l  177 (196)
                      ..+.
T Consensus       148 ~~a~  151 (209)
T PF01135_consen  148 TAAV  151 (209)
T ss_dssp             SSBB
T ss_pred             eecc
Confidence            8876

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=98.28  E-value=8.8e-06  Score=67.44  Aligned_cols=93  Identities=19%  Similarity=0.238  Sum_probs=70.2

Q ss_pred             HHHHHHHHHhhcC-----CCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC----------------------------
Q psy10644        104 VDIIIKSIQERES-----KGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA----------------------------  148 (196)
Q Consensus       104 ~~~~~~~l~~~~~-----~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~----------------------------  148 (196)
                      +..+++.|....+     ....+||==|||.|+++-.+  .+..|.|.+.|-                            
T Consensus        37 ~~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~  116 (270)
T PF07942_consen   37 YSPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSF  116 (270)
T ss_pred             HHHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecc
Confidence            4456666665533     23578999999999999988  677899998886                            


Q ss_pred             ---------------------------CCceEEEecCCCCCCCC---CceeeEeeccccc-ccCHHHHHHHHHHhccCC
Q psy10644        149 ---------------------------LNERVTSCDMTRTPLKP---YSVDVAVFCLSLM-GTDLAACIKEANRILKLG  196 (196)
Q Consensus       149 ---------------------------~~~~~~~~d~~~lp~~~---~sfD~Vi~~~~lh-~~d~~~~l~e~~rvLkpg  196 (196)
                                                 .+.....+|...+..++   ++||+|+.|+-+- ..|....|+.|+++||||
T Consensus       117 sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpg  195 (270)
T PF07942_consen  117 SNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPG  195 (270)
T ss_pred             cCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccC
Confidence                                       13455566665554344   7999999997774 448999999999999997

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.28  E-value=2.6e-06  Score=70.01  Aligned_cols=63  Identities=19%  Similarity=0.164  Sum_probs=49.2

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC-------------CCceEEEecCCCCCCCCCcee---eEeeccc
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA-------------LNERVTSCDMTRTPLKPYSVD---VAVFCLS  176 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~-------------~~~~~~~~d~~~lp~~~~sfD---~Vi~~~~  176 (196)
                      ...++.+|||||||+|.++..|  ....|+++|+++             .++.++.+|+..++++  .+|   +|+++..
T Consensus        26 ~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~--~~d~~~~vvsNlP  103 (253)
T TIGR00755        26 NVLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLP--DFPKQLKVVSNLP  103 (253)
T ss_pred             CCCCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChh--HcCCcceEEEcCC
Confidence            3345789999999999999999  345799999988             3577888999887765  466   7777766


Q ss_pred             ccc
Q psy10644        177 LMG  179 (196)
Q Consensus       177 lh~  179 (196)
                      +|.
T Consensus       104 y~i  106 (253)
T TIGR00755       104 YNI  106 (253)
T ss_pred             hhh
Confidence            553

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>KOG1269|consensus

Probab=98.27  E-value=7.6e-07  Score=76.76  Aligned_cols=79  Identities=23%  Similarity=0.257  Sum_probs=70.0

Q ss_pred             CCCEEEEEcCCCchhHhhc---cCCeEEEEeCCC----------------CCceEEEecCCCCCCCCCceeeEeecccc-
Q psy10644        118 GRLVIADLGCGEAKLAAEL---TQHKVHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAVFCLSL-  177 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l---~~~~v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l-  177 (196)
                      ++..++|+|||-|...+.+   ..+.++|+|+++                ....+..+|+-..|++++.||.|-+..+. 
T Consensus       110 ~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~  189 (364)
T KOG1269|consen  110 PGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVVC  189 (364)
T ss_pred             ccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeecc
Confidence            3568999999999998888   668999999998                24456788888889999999999999999 


Q ss_pred             cccCHHHHHHHHHHhccCC
Q psy10644        178 MGTDLAACIKEANRILKLG  196 (196)
Q Consensus       178 h~~d~~~~l~e~~rvLkpg  196 (196)
                      |..+...+++|++|+||||
T Consensus       190 ~~~~~~~~y~Ei~rv~kpG  208 (364)
T KOG1269|consen  190 HAPDLEKVYAEIYRVLKPG  208 (364)
T ss_pred             cCCcHHHHHHHHhcccCCC
Confidence            7779999999999999997

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=98.27  E-value=1.3e-06  Score=73.99  Aligned_cols=56  Identities=16%  Similarity=0.192  Sum_probs=45.6

Q ss_pred             CCEEEEEcCCCchhHhhc--cCCeEEEEeCCC---------------CCceEEEecCCCCCC-CCCceeeEeec
Q psy10644        119 RLVIADLGCGEAKLAAEL--TQHKVHSLDLVA---------------LNERVTSCDMTRTPL-KPYSVDVAVFC  174 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l--~~~~v~giDls~---------------~~~~~~~~d~~~lp~-~~~sfD~Vi~~  174 (196)
                      +.+|||+|||+|.++..+  .+.+|+|+|+++               .++.++++|+..+.. ..+.||+|++.
T Consensus       174 ~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d  247 (315)
T PRK03522        174 PRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVN  247 (315)
T ss_pred             CCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEEC
Confidence            579999999999999888  456999999998               357899999876532 34579999876

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=98.26  E-value=1.6e-06  Score=72.60  Aligned_cols=78  Identities=9%  Similarity=0.030  Sum_probs=58.5

Q ss_pred             CCEEEEEcCCCchhHhhc--------c----CCeEEEEeCCC--------------------------------------
Q psy10644        119 RLVIADLGCGEAKLAAEL--------T----QHKVHSLDLVA--------------------------------------  148 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l--------~----~~~v~giDls~--------------------------------------  148 (196)
                      ..+|+..||.||.=+-.|        .    ..+|+|+|+++                                      
T Consensus       116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~  195 (287)
T PRK10611        116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL  195 (287)
T ss_pred             CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence            479999999999542222        1    24899999998                                      


Q ss_pred             --------CCceEEEecCCCCCCC-CCceeeEeecccc-ccc--CHHHHHHHHHHhccCC
Q psy10644        149 --------LNERVTSCDMTRTPLK-PYSVDVAVFCLSL-MGT--DLAACIKEANRILKLG  196 (196)
Q Consensus       149 --------~~~~~~~~d~~~lp~~-~~sfD~Vi~~~~l-h~~--d~~~~l~e~~rvLkpg  196 (196)
                              ..+.|.+.|+...+++ .+.||+|+|.++| |..  ...++++.+++.|+||
T Consensus       196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pg  255 (287)
T PRK10611        196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPD  255 (287)
T ss_pred             EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCC
Confidence                    1235666676554433 5789999999999 443  5788999999999997

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=98.26  E-value=1.9e-06  Score=76.32  Aligned_cols=58  Identities=17%  Similarity=0.181  Sum_probs=46.5

Q ss_pred             CCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC---------------CCceEEEecCCC----CCCCCCceeeEeec
Q psy10644        117 KGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA---------------LNERVTSCDMTR----TPLKPYSVDVAVFC  174 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~---------------~~~~~~~~d~~~----lp~~~~sfD~Vi~~  174 (196)
                      .++.+|||+|||+|.++..+  ...+|+|+|+|+               .++.++.+|+.+    +++.+++||+|++.
T Consensus       296 ~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~d  374 (443)
T PRK13168        296 QPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLD  374 (443)
T ss_pred             CCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEEC
Confidence            45679999999999999888  346999999999               367899999854    23556789999874

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.25  E-value=9.8e-07  Score=71.57  Aligned_cols=69  Identities=14%  Similarity=0.181  Sum_probs=44.7

Q ss_pred             CCCEEEEEcCCCchhHhhc--c-CCeEEEEeCCC--------CCce---EEEecCCCC-----CCCCCceeeEeeccccc
Q psy10644        118 GRLVIADLGCGEAKLAAEL--T-QHKVHSLDLVA--------LNER---VTSCDMTRT-----PLKPYSVDVAVFCLSLM  178 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l--~-~~~v~giDls~--------~~~~---~~~~d~~~l-----p~~~~sfD~Vi~~~~lh  178 (196)
                      ++.+|||+|||+|.++..+  . ..+|+|+|+++        .+..   +...|+..+     +..-..+|+++++..+.
T Consensus        75 ~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS~~~~  154 (228)
T TIGR00478        75 KNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFATFDVSFISLISI  154 (228)
T ss_pred             CCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEeehHhH
Confidence            4679999999999999988  3 34899999998        1222   333344432     22224788888777664


Q ss_pred             ccCHHHHH
Q psy10644        179 GTDLAACI  186 (196)
Q Consensus       179 ~~d~~~~l  186 (196)
                      ..+...++
T Consensus       155 l~~i~~~l  162 (228)
T TIGR00478       155 LPELDLLL  162 (228)
T ss_pred             HHHHHHHh
Confidence            33444433

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=98.24  E-value=5e-06  Score=66.10  Aligned_cols=59  Identities=17%  Similarity=0.073  Sum_probs=44.8

Q ss_pred             CCEEEEEcCCCchhHhh-c--cCCeEEEEeCCC---------------CCceEEEecCCC-CCCCCCceeeEeecccc
Q psy10644        119 RLVIADLGCGEAKLAAE-L--TQHKVHSLDLVA---------------LNERVTSCDMTR-TPLKPYSVDVAVFCLSL  177 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~-l--~~~~v~giDls~---------------~~~~~~~~d~~~-lp~~~~sfD~Vi~~~~l  177 (196)
                      +.+|||+|||+|.++.. +  ...+|+++|.++               .++.++.+|+.. ++.....||+|++.--+
T Consensus        54 ~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy  131 (199)
T PRK10909         54 DARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF  131 (199)
T ss_pred             CCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCC
Confidence            57999999999999875 4  235999999998               257788888754 33234579999987664

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=98.22  E-value=3e-06  Score=67.79  Aligned_cols=79  Identities=19%  Similarity=0.148  Sum_probs=54.1

Q ss_pred             CCCEEEEEcCCCchhHhhc-cC--CeEEEEeCCC-----------C---C-ceEEEecCCCCCCCCCceeeEeecccc-c
Q psy10644        118 GRLVIADLGCGEAKLAAEL-TQ--HKVHSLDLVA-----------L---N-ERVTSCDMTRTPLKPYSVDVAVFCLSL-M  178 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l-~~--~~v~giDls~-----------~---~-~~~~~~d~~~lp~~~~sfD~Vi~~~~l-h  178 (196)
                      ...+.||.|||-|+++..+ .+  .+|.-+|.++           .   . ..+.++-++++..+++.||+|++-+++ |
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lgh  134 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGH  134 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GGG
T ss_pred             CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhcc
Confidence            3578999999999999877 22  2777777776           1   1 355666677765556899999999999 7


Q ss_pred             cc--CHHHHHHHHHHhccCC
Q psy10644        179 GT--DLAACIKEANRILKLG  196 (196)
Q Consensus       179 ~~--d~~~~l~e~~rvLkpg  196 (196)
                      .+  |...+|+.+...|+|+
T Consensus       135 LTD~dlv~fL~RCk~~L~~~  154 (218)
T PF05891_consen  135 LTDEDLVAFLKRCKQALKPN  154 (218)
T ss_dssp             S-HHHHHHHHHHHHHHEEEE
T ss_pred             CCHHHHHHHHHHHHHhCcCC
Confidence            76  7899999999999985

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.22  E-value=4.5e-06  Score=66.47  Aligned_cols=64  Identities=20%  Similarity=0.129  Sum_probs=50.7

Q ss_pred             hcCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC---------------CCceEEEecCCCCCCCCCceeeEeeccc
Q psy10644        114 RESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDVAVFCLS  176 (196)
Q Consensus       114 ~~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~  176 (196)
                      +.+.++.+|||||||+|..+..|  ...+|+++|..+               .|+.++++|...---+...||.|+...+
T Consensus        68 L~~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aPyD~I~Vtaa  147 (209)
T COG2518          68 LELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAPYDRIIVTAA  147 (209)
T ss_pred             hCCCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCCcCEEEEeec
Confidence            35666899999999999998888  344999999887               4788999998542224588999988776


Q ss_pred             c
Q psy10644        177 L  177 (196)
Q Consensus       177 l  177 (196)
                      .
T Consensus       148 a  148 (209)
T COG2518         148 A  148 (209)
T ss_pred             c
Confidence            5

>KOG2904|consensus

Probab=98.21  E-value=4.1e-06  Score=68.97  Aligned_cols=72  Identities=25%  Similarity=0.316  Sum_probs=50.8

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC----------------CCceEEEecCC----
Q psy10644        104 VDIIIKSIQERESKGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA----------------LNERVTSCDMT----  159 (196)
Q Consensus       104 ~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~----------------~~~~~~~~d~~----  159 (196)
                      ++.+++.+.+....++..|||+|||+|..+..+    +.+.|+++|.|+                ..+.++..+++    
T Consensus       134 V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~  213 (328)
T KOG2904|consen  134 VEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDAS  213 (328)
T ss_pred             HHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccc
Confidence            344555555443334568999999999998777    677999999998                34555544332    


Q ss_pred             -CCCCCCCceeeEeecc
Q psy10644        160 -RTPLKPYSVDVAVFCL  175 (196)
Q Consensus       160 -~lp~~~~sfD~Vi~~~  175 (196)
                       ..++.++.+|+++++-
T Consensus       214 ~~~~l~~~~~dllvsNP  230 (328)
T KOG2904|consen  214 DEHPLLEGKIDLLVSNP  230 (328)
T ss_pred             cccccccCceeEEecCC
Confidence             3456678999999864

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.20  E-value=4.6e-06  Score=70.14  Aligned_cols=64  Identities=20%  Similarity=0.235  Sum_probs=49.9

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC----------------CCceEEEecCCCCCCCCCceeeEeeccc
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAVFCLS  176 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~  176 (196)
                      ...++.+|||||||+|.++..+  .+.+|+++|+++                .++.++.+|+...+++  .||+|+++.-
T Consensus        33 ~~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~--~~d~VvaNlP  110 (294)
T PTZ00338         33 AIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFP--YFDVCVANVP  110 (294)
T ss_pred             CCCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhccc--ccCEEEecCC
Confidence            3345789999999999999888  456899999997                2578899998776553  6899988766


Q ss_pred             cccc
Q psy10644        177 LMGT  180 (196)
Q Consensus       177 lh~~  180 (196)
                      .+..
T Consensus       111 Y~Is  114 (294)
T PTZ00338        111 YQIS  114 (294)
T ss_pred             cccC
Confidence            5533

>PRK03612 spermidine synthase; Provisional

Probab=98.17  E-value=5.7e-06  Score=74.76  Aligned_cols=78  Identities=18%  Similarity=0.077  Sum_probs=57.8

Q ss_pred             CCEEEEEcCCCchhHhhc---cC-CeEEEEeCCC----------------------CCceEEEecCCC-CCCCCCceeeE
Q psy10644        119 RLVIADLGCGEAKLAAEL---TQ-HKVHSLDLVA----------------------LNERVTSCDMTR-TPLKPYSVDVA  171 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l---~~-~~v~giDls~----------------------~~~~~~~~d~~~-lp~~~~sfD~V  171 (196)
                      ..+|||||||+|..++.+   .. .+|+++|+++                      ++++++.+|... +...+++||+|
T Consensus       298 ~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDvI  377 (521)
T PRK03612        298 PRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDVI  377 (521)
T ss_pred             CCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCEE
Confidence            568999999999999887   23 5999999987                      135667777654 23335789999


Q ss_pred             eecccccc-c-----CHHHHHHHHHHhccCC
Q psy10644        172 VFCLSLMG-T-----DLAACIKEANRILKLG  196 (196)
Q Consensus       172 i~~~~lh~-~-----d~~~~l~e~~rvLkpg  196 (196)
                      ++...-.. .     -..++++.+++.||||
T Consensus       378 i~D~~~~~~~~~~~L~t~ef~~~~~~~L~pg  408 (521)
T PRK03612        378 IVDLPDPSNPALGKLYSVEFYRLLKRRLAPD  408 (521)
T ss_pred             EEeCCCCCCcchhccchHHHHHHHHHhcCCC
Confidence            98754321 1     1346899999999997

>KOG3420|consensus

Probab=98.16  E-value=1.7e-06  Score=65.00  Aligned_cols=60  Identities=25%  Similarity=0.378  Sum_probs=49.9

Q ss_pred             CCCEEEEEcCCCchhHhhc---cCCeEEEEeCCC--------------CCceEEEecCCCCCCCCCceeeEeecccc
Q psy10644        118 GRLVIADLGCGEAKLAAEL---TQHKVHSLDLVA--------------LNERVTSCDMTRTPLKPYSVDVAVFCLSL  177 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l---~~~~v~giDls~--------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l  177 (196)
                      ++.+++|+|||.|-+...+   .+..|.|+|+.+              .++.+.+||+..+-+..+.||.++..--+
T Consensus        48 Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppF  124 (185)
T KOG3420|consen   48 EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPF  124 (185)
T ss_pred             cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCC
Confidence            3778999999999887444   456899999999              36789999998887778999999887655

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.14  E-value=8.8e-06  Score=65.70  Aligned_cols=96  Identities=20%  Similarity=0.199  Sum_probs=72.2

Q ss_pred             CChHHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc--cCC-eEEEEeCCC-----------------CCceEEEecCCC
Q psy10644        101 INPVDIIIKSIQERESKGRLVIADLGCGEAKLAAEL--TQH-KVHSLDLVA-----------------LNERVTSCDMTR  160 (196)
Q Consensus       101 ~~~~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l--~~~-~v~giDls~-----------------~~~~~~~~d~~~  160 (196)
                      .+|+...+..+....++.+.+|||...|-|..+...  .++ +|+.++-++                 .++.++.+|+.+
T Consensus       117 tdP~~Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e  196 (287)
T COG2521         117 TDPLEDTLAKVELVKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYE  196 (287)
T ss_pred             cCcHHHHHhhhheeccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHH
Confidence            456666665555545567899999999999998777  565 899998777                 366888899865


Q ss_pred             C--CCCCCceeeEeec---cccccc-CHHHHHHHHHHhccCC
Q psy10644        161 T--PLKPYSVDVAVFC---LSLMGT-DLAACIKEANRILKLG  196 (196)
Q Consensus       161 l--p~~~~sfD~Vi~~---~~lh~~-d~~~~l~e~~rvLkpg  196 (196)
                      +  .|++.+||+|+--   +++-+. --+.+.+|++|+||||
T Consensus       197 ~V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrg  238 (287)
T COG2521         197 VVKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRG  238 (287)
T ss_pred             HHhcCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcC
Confidence            3  4889999998752   333222 5688999999999997

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=98.12  E-value=6e-05  Score=62.53  Aligned_cols=79  Identities=15%  Similarity=0.071  Sum_probs=60.8

Q ss_pred             CCCEEEEEcCCCchh----Hhhc----c-----CCeEEEEeCCC------------------------------------
Q psy10644        118 GRLVIADLGCGEAKL----AAEL----T-----QHKVHSLDLVA------------------------------------  148 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~----a~~l----~-----~~~v~giDls~------------------------------------  148 (196)
                      ...+|.-.||+||.=    |..+    .     ..+|+|.|++.                                    
T Consensus        96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~  175 (268)
T COG1352          96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS  175 (268)
T ss_pred             CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence            467999999999943    2222    1     35999999997                                    


Q ss_pred             --------CCceEEEecCCCCCCCCCceeeEeeccccccc---CHHHHHHHHHHhccCC
Q psy10644        149 --------LNERVTSCDMTRTPLKPYSVDVAVFCLSLMGT---DLAACIKEANRILKLG  196 (196)
Q Consensus       149 --------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~~---d~~~~l~e~~rvLkpg  196 (196)
                              ..|.|...|+..-++..+.||+|+|-+||.+.   ...+++..++..|+||
T Consensus       176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~g  234 (268)
T COG1352         176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPG  234 (268)
T ss_pred             EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCC
Confidence                    25677788875544356789999999999544   5678999999999997

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.12  E-value=4.1e-06  Score=78.21  Aligned_cols=78  Identities=17%  Similarity=0.118  Sum_probs=58.3

Q ss_pred             CCEEEEEcCCCchhHhhc--cCC-eEEEEeCCC---------------C--CceEEEecCCCC-CCCCCceeeEeeccc-
Q psy10644        119 RLVIADLGCGEAKLAAEL--TQH-KVHSLDLVA---------------L--NERVTSCDMTRT-PLKPYSVDVAVFCLS-  176 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l--~~~-~v~giDls~---------------~--~~~~~~~d~~~l-p~~~~sfD~Vi~~~~-  176 (196)
                      +.+|||+|||+|.++..+  .+. +|+++|+|+               .  ++.++++|+.+. .-..++||+|++.-- 
T Consensus       539 g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP~  618 (702)
T PRK11783        539 GKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPPT  618 (702)
T ss_pred             CCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCCC
Confidence            679999999999998888  333 799999998               1  467888887542 111568999998421 


Q ss_pred             ----------cccc-CHHHHHHHHHHhccCC
Q psy10644        177 ----------LMGT-DLAACIKEANRILKLG  196 (196)
Q Consensus       177 ----------lh~~-d~~~~l~e~~rvLkpg  196 (196)
                                +... +...++..+.++|+||
T Consensus       619 f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~g  649 (702)
T PRK11783        619 FSNSKRMEDSFDVQRDHVALIKDAKRLLRPG  649 (702)
T ss_pred             CCCCCccchhhhHHHHHHHHHHHHHHHcCCC
Confidence                      1112 5778899999999987

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=98.03  E-value=5.3e-05  Score=64.62  Aligned_cols=60  Identities=17%  Similarity=0.033  Sum_probs=46.1

Q ss_pred             CCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC--------CCceEEEecCCCCCCCCCceeeEeeccc
Q psy10644        117 KGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA--------LNERVTSCDMTRTPLKPYSVDVAVFCLS  176 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~--------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~  176 (196)
                      .++.++|||||++|.|+..|  .+.+|++||..+        +++.....|......+.+.+|+|+|-.+
T Consensus       210 ~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmv  279 (357)
T PRK11760        210 APGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMV  279 (357)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEecc
Confidence            46889999999999999999  567999999887        4566666665443222677899887655

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=98.02  E-value=2.7e-05  Score=63.55  Aligned_cols=77  Identities=17%  Similarity=0.151  Sum_probs=62.5

Q ss_pred             cCCCCCEEEEEcCCCchhHhhcc-----CCeEEEEeCCC----------------CCceEEEecCCCCCCCCCceeeEee
Q psy10644        115 ESKGRLVIADLGCGEAKLAAELT-----QHKVHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAVF  173 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l~-----~~~v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~  173 (196)
                      ...++.+|||.|.|+|.++..|.     ..+|+++|+-+                .++.+...|+.+.-.++ .||+|+.
T Consensus        91 gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~-~vDav~L  169 (256)
T COG2519          91 GISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE-DVDAVFL  169 (256)
T ss_pred             CCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccc-ccCEEEE
Confidence            44568999999999999988883     36999999988                24777888887765554 8888765


Q ss_pred             cccccccCHHHHHHHHHHhccCC
Q psy10644        174 CLSLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       174 ~~~lh~~d~~~~l~e~~rvLkpg  196 (196)
                      -    ..++..++..+.++||||
T Consensus       170 D----mp~PW~~le~~~~~Lkpg  188 (256)
T COG2519         170 D----LPDPWNVLEHVSDALKPG  188 (256)
T ss_pred             c----CCChHHHHHHHHHHhCCC
Confidence            3    359999999999999997

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=98.01  E-value=3.4e-05  Score=55.23  Aligned_cols=74  Identities=28%  Similarity=0.393  Sum_probs=55.5

Q ss_pred             EEEEcCCCchh--HhhccC--CeEEEEeCCC--------CC-------ceEEEecCCC--CCCCC-CceeeEeecccc-c
Q psy10644        122 IADLGCGEAKL--AAELTQ--HKVHSLDLVA--------LN-------ERVTSCDMTR--TPLKP-YSVDVAVFCLSL-M  178 (196)
Q Consensus       122 ILDlGCG~G~~--a~~l~~--~~v~giDls~--------~~-------~~~~~~d~~~--lp~~~-~sfD~Vi~~~~l-h  178 (196)
                      ++|+|||+|..  ...+..  ..++|+|+++        ..       +.+...+...  +++.. ..||++ +.... +
T Consensus        52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~  130 (257)
T COG0500          52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVLH  130 (257)
T ss_pred             eEEecCCcCHHHHHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeeehh
Confidence            99999999984  333323  4899999998        11       4677777765  78877 589999 55544 5


Q ss_pred             ccCHHHHHHHHHHhccCC
Q psy10644        179 GTDLAACIKEANRILKLG  196 (196)
Q Consensus       179 ~~d~~~~l~e~~rvLkpg  196 (196)
                      +.+....+.++.++|+|+
T Consensus       131 ~~~~~~~~~~~~~~l~~~  148 (257)
T COG0500         131 LLPPAKALRELLRVLKPG  148 (257)
T ss_pred             cCCHHHHHHHHHHhcCCC
Confidence            556889999999999984

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=97.98  E-value=2.1e-05  Score=68.80  Aligned_cols=79  Identities=14%  Similarity=0.004  Sum_probs=56.2

Q ss_pred             CCCEEEEEcCCCchhHhhc--cCC-eEEEEeCCC---------------C--CceEEEecCCCCC----CCCCceeeEee
Q psy10644        118 GRLVIADLGCGEAKLAAEL--TQH-KVHSLDLVA---------------L--NERVTSCDMTRTP----LKPYSVDVAVF  173 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l--~~~-~v~giDls~---------------~--~~~~~~~d~~~lp----~~~~sfD~Vi~  173 (196)
                      ++.+|||+|||+|.++...  .+. +|+++|+++               .  ++.++.+|+..+-    ...++||+|++
T Consensus       220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil  299 (396)
T PRK15128        220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM  299 (396)
T ss_pred             CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence            3679999999999987654  333 899999998               1  4678888885531    13468999997


Q ss_pred             ccccc---------c-cCHHHHHHHHHHhccCC
Q psy10644        174 CLSLM---------G-TDLAACIKEANRILKLG  196 (196)
Q Consensus       174 ~~~lh---------~-~d~~~~l~e~~rvLkpg  196 (196)
                      .--..         . .++..++..+.++|+||
T Consensus       300 DPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~g  332 (396)
T PRK15128        300 DPPKFVENKSQLMGACRGYKDINMLAIQLLNPG  332 (396)
T ss_pred             CCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            63221         0 14556677788899986

>KOG2899|consensus

Probab=97.98  E-value=2.1e-05  Score=63.81  Aligned_cols=31  Identities=16%  Similarity=0.354  Sum_probs=26.1

Q ss_pred             CCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC
Q psy10644        118 GRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA  148 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~  148 (196)
                      ....+|||||-.|.++..+    ....|.|+||.+
T Consensus        58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~   92 (288)
T KOG2899|consen   58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDP   92 (288)
T ss_pred             CcceeEeccCCcchhHHHHHHhhccceeeEeeccH
Confidence            3568999999999998777    345899999998

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=97.96  E-value=1.3e-05  Score=64.96  Aligned_cols=77  Identities=18%  Similarity=0.247  Sum_probs=60.8

Q ss_pred             CEEEEEcCCCchhHhhc----cCCeEEEEeCCC--------------C-CceEEEecCCCC---CCCCCceeeEeecccc
Q psy10644        120 LVIADLGCGEAKLAAEL----TQHKVHSLDLVA--------------L-NERVTSCDMTRT---PLKPYSVDVAVFCLSL  177 (196)
Q Consensus       120 ~~ILDlGCG~G~~a~~l----~~~~v~giDls~--------------~-~~~~~~~d~~~l---p~~~~sfD~Vi~~~~l  177 (196)
                      ..+||||||.|.+...+    +...++|+++..              . |+.+++.|+..+   -+++++.|-|..++.=
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD  129 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD  129 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence            48999999999997777    566999999987              3 888898887543   2456699999888764


Q ss_pred             -ccc--------CHHHHHHHHHHhccCC
Q psy10644        178 -MGT--------DLAACIKEANRILKLG  196 (196)
Q Consensus       178 -h~~--------d~~~~l~e~~rvLkpg  196 (196)
                       |..        =...++..+.++||||
T Consensus       130 PWpKkRH~KRRl~~~~fl~~~a~~Lk~g  157 (227)
T COG0220         130 PWPKKRHHKRRLTQPEFLKLYARKLKPG  157 (227)
T ss_pred             CCCCccccccccCCHHHHHHHHHHccCC
Confidence             221        2578999999999997

>PLN02672 methionine S-methyltransferase

Probab=97.92  E-value=2.5e-05  Score=75.53  Aligned_cols=75  Identities=20%  Similarity=0.287  Sum_probs=50.0

Q ss_pred             CCChHHHHHHHHHhhcCC--CCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC-----------C-------------
Q psy10644        100 PINPVDIIIKSIQERESK--GRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA-----------L-------------  149 (196)
Q Consensus       100 ~~~~~~~~~~~l~~~~~~--~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~-----------~-------------  149 (196)
                      |......+++.|...+..  ++.+|||||||+|.++..+    ...+|+|+|+|+           .             
T Consensus        98 PRpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~  177 (1082)
T PLN02672         98 PEDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDG  177 (1082)
T ss_pred             CchhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCccccccccccc
Confidence            333344555555432211  2458999999999998887    346899999999           1             


Q ss_pred             -------CceEEEecCCCCCCC-CCceeeEeec
Q psy10644        150 -------NERVTSCDMTRTPLK-PYSVDVAVFC  174 (196)
Q Consensus       150 -------~~~~~~~d~~~lp~~-~~sfD~Vi~~  174 (196)
                             ++.++.+|+...... ...||+||++
T Consensus       178 ~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSN  210 (1082)
T PLN02672        178 EGKTLLDRVEFYESDLLGYCRDNNIELDRIVGC  210 (1082)
T ss_pred             ccccccccEEEEECchhhhccccCCceEEEEEC
Confidence                   267788887553211 2369999986

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=97.91  E-value=9e-06  Score=64.93  Aligned_cols=87  Identities=20%  Similarity=0.190  Sum_probs=50.3

Q ss_pred             HHHhhcCCCCCEEEEEcCCCchhHhhc---cCC-eEEEEeCCC------------------------CCceEEEecCCCC
Q psy10644        110 SIQERESKGRLVIADLGCGEAKLAAEL---TQH-KVHSLDLVA------------------------LNERVTSCDMTRT  161 (196)
Q Consensus       110 ~l~~~~~~~~~~ILDlGCG~G~~a~~l---~~~-~v~giDls~------------------------~~~~~~~~d~~~l  161 (196)
                      .+......++...+|||||.|......   .++ +++|+++.+                        ..+.+..+|+.+.
T Consensus        34 il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~  113 (205)
T PF08123_consen   34 ILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDP  113 (205)
T ss_dssp             HHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTH
T ss_pred             HHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCcccc
Confidence            333344556889999999999885444   455 599999998                        2345556665443


Q ss_pred             CCCC---CceeeEeecccccccCHHHHHHHHHHhccCC
Q psy10644        162 PLKP---YSVDVAVFCLSLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       162 p~~~---~sfD~Vi~~~~lh~~d~~~~l~e~~rvLkpg  196 (196)
                      ++..   ...|+|+++..+...+....|.++..-||+|
T Consensus       114 ~~~~~~~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G  151 (205)
T PF08123_consen  114 DFVKDIWSDADVVFVNNTCFDPDLNLALAELLLELKPG  151 (205)
T ss_dssp             HHHHHHGHC-SEEEE--TTT-HHHHHHHHHHHTTS-TT
T ss_pred             HhHhhhhcCCCEEEEeccccCHHHHHHHHHHHhcCCCC
Confidence            2111   3468888888776667777888888888886

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>PLN02476 O-methyltransferase

Probab=97.90  E-value=5.8e-05  Score=62.95  Aligned_cols=89  Identities=7%  Similarity=-0.015  Sum_probs=64.4

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC----------------CCceEEEecCCC-C
Q psy10644        104 VDIIIKSIQERESKGRLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA----------------LNERVTSCDMTR-T  161 (196)
Q Consensus       104 ~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~----------------~~~~~~~~d~~~-l  161 (196)
                      ...++..+.....  ..+|||||+|+|..+..+     .+.+|+++|.++                .+++++.+|+.+ +
T Consensus       106 ~g~lL~~L~~~~~--ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L  183 (278)
T PLN02476        106 QAQLLAMLVQILG--AERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESL  183 (278)
T ss_pred             HHHHHHHHHHhcC--CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHH
Confidence            3445555554443  679999999999988877     245899999998                367888888744 2


Q ss_pred             C-C----CCCceeeEeecccccccCHHHHHHHHHHhccCC
Q psy10644        162 P-L----KPYSVDVAVFCLSLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       162 p-~----~~~sfD~Vi~~~~lh~~d~~~~l~e~~rvLkpg  196 (196)
                      + +    ..++||+|+.-..  -.++..++..+.++|+||
T Consensus       184 ~~l~~~~~~~~FD~VFIDa~--K~~Y~~y~e~~l~lL~~G  221 (278)
T PLN02476        184 KSMIQNGEGSSYDFAFVDAD--KRMYQDYFELLLQLVRVG  221 (278)
T ss_pred             HHHHhcccCCCCCEEEECCC--HHHHHHHHHHHHHhcCCC
Confidence            2 1    2468999877653  226788888999999987

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=97.90  E-value=6.2e-05  Score=64.02  Aligned_cols=63  Identities=14%  Similarity=0.135  Sum_probs=43.3

Q ss_pred             CCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC-----------CC------ceEEE-ecCCCC----CCCCCceeeE
Q psy10644        118 GRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA-----------LN------ERVTS-CDMTRT----PLKPYSVDVA  171 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~-----------~~------~~~~~-~d~~~l----p~~~~sfD~V  171 (196)
                      .+.+|||||||+|.++..+    .+++++|+|+++           .|      +.+.. .+...+    ..+.+.||+|
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli  193 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT  193 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence            4679999999999776655    467999999998           12      33332 222222    1246789999


Q ss_pred             eeccccccc
Q psy10644        172 VFCLSLMGT  180 (196)
Q Consensus       172 i~~~~lh~~  180 (196)
                      +|+--+|..
T Consensus       194 vcNPPf~~s  202 (321)
T PRK11727        194 LCNPPFHAS  202 (321)
T ss_pred             EeCCCCcCc
Confidence            998877643

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=97.89  E-value=3.7e-05  Score=59.14  Aligned_cols=82  Identities=15%  Similarity=0.164  Sum_probs=63.3

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC----------CCceEEEecCCCCC-----CCCCceeeEeec
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA----------LNERVTSCDMTRTP-----LKPYSVDVAVFC  174 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~----------~~~~~~~~d~~~lp-----~~~~sfD~Vi~~  174 (196)
                      .+..+.-|||+|.|||.+++.+     .+..+++++.++          +.++++.+|+.++.     +++..||.|+|+
T Consensus        45 ~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~~D~viS~  124 (194)
T COG3963          45 DPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQFFDSVISG  124 (194)
T ss_pred             CcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCCCeeeeEEec
Confidence            3445678999999999999988     345899999998          57788888886654     567789999999


Q ss_pred             cccc-cc--CHHHHHHHHHHhccCC
Q psy10644        175 LSLM-GT--DLAACIKEANRILKLG  196 (196)
Q Consensus       175 ~~lh-~~--d~~~~l~e~~rvLkpg  196 (196)
                      .-+. ..  -..+.|+++...|.+|
T Consensus       125 lPll~~P~~~~iaile~~~~rl~~g  149 (194)
T COG3963         125 LPLLNFPMHRRIAILESLLYRLPAG  149 (194)
T ss_pred             cccccCcHHHHHHHHHHHHHhcCCC
Confidence            8773 33  4556777777777654

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=97.89  E-value=1.8e-05  Score=69.77  Aligned_cols=58  Identities=19%  Similarity=0.311  Sum_probs=45.6

Q ss_pred             CCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC---------------CCceEEEecCCCC----CCCCCceeeEeec
Q psy10644        117 KGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA---------------LNERVTSCDMTRT----PLKPYSVDVAVFC  174 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~---------------~~~~~~~~d~~~l----p~~~~sfD~Vi~~  174 (196)
                      .++.+|||+|||+|.++..+  ...+|+|+|+++               .++.++.+|+...    ++.+++||+|++.
T Consensus       291 ~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~d  369 (431)
T TIGR00479       291 QGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLD  369 (431)
T ss_pred             CCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEEC
Confidence            34679999999999999988  345899999998               3678999997542    2345679998863

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=97.87  E-value=4.2e-05  Score=61.08  Aligned_cols=87  Identities=13%  Similarity=0.117  Sum_probs=60.8

Q ss_pred             HHHHHHHhhcCCCCCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC----------------CCceEEEecCCC-CC-
Q psy10644        106 IIIKSIQERESKGRLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA----------------LNERVTSCDMTR-TP-  162 (196)
Q Consensus       106 ~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~----------------~~~~~~~~d~~~-lp-  162 (196)
                      .++..+.+...  ..+||||||++|..+..|     .+.+|+.+|+++                .+++++.+|..+ ++ 
T Consensus        35 ~lL~~l~~~~~--~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~  112 (205)
T PF01596_consen   35 QLLQMLVRLTR--PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPE  112 (205)
T ss_dssp             HHHHHHHHHHT---SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHH
T ss_pred             HHHHHHHHhcC--CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHH
Confidence            34444443332  568999999999887777     257999999998                367888888643 22 


Q ss_pred             ----CCCCceeeEeecccccccCHHHHHHHHHHhccCC
Q psy10644        163 ----LKPYSVDVAVFCLSLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       163 ----~~~~sfD~Vi~~~~lh~~d~~~~l~e~~rvLkpg  196 (196)
                          .+.+.||+|+.-..  -.++..++..+.++|+||
T Consensus       113 l~~~~~~~~fD~VFiDa~--K~~y~~y~~~~~~ll~~g  148 (205)
T PF01596_consen  113 LANDGEEGQFDFVFIDAD--KRNYLEYFEKALPLLRPG  148 (205)
T ss_dssp             HHHTTTTTSEEEEEEEST--GGGHHHHHHHHHHHEEEE
T ss_pred             HHhccCCCceeEEEEccc--ccchhhHHHHHhhhccCC
Confidence                12468999887653  226778888888999886

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=97.85  E-value=5.7e-05  Score=61.97  Aligned_cols=78  Identities=22%  Similarity=0.256  Sum_probs=55.5

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC----------------CCceEEEecCCCCCCC---CCceee
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA----------------LNERVTSCDMTRTPLK---PYSVDV  170 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~----------------~~~~~~~~d~~~lp~~---~~sfD~  170 (196)
                      ...++.+|||.|.|+|.++..|     +..+|+.+|..+                .++.+...|+..-.++   +..+|.
T Consensus        37 ~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~Da  116 (247)
T PF08704_consen   37 DIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDFDA  116 (247)
T ss_dssp             T--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSEEE
T ss_pred             CCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCcccE
Confidence            4456999999999999998888     456999999988                4788999998653342   367898


Q ss_pred             EeecccccccCHHHHHHHHHHhc-cCC
Q psy10644        171 AVFCLSLMGTDLAACIKEANRIL-KLG  196 (196)
Q Consensus       171 Vi~~~~lh~~d~~~~l~e~~rvL-kpg  196 (196)
                      |+.-.    .++..+|..+.++| |||
T Consensus       117 vfLDl----p~Pw~~i~~~~~~L~~~g  139 (247)
T PF08704_consen  117 VFLDL----PDPWEAIPHAKRALKKPG  139 (247)
T ss_dssp             EEEES----SSGGGGHHHHHHHE-EEE
T ss_pred             EEEeC----CCHHHHHHHHHHHHhcCC
Confidence            76543    47888899999999 765

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=97.84  E-value=2.6e-05  Score=60.57  Aligned_cols=60  Identities=20%  Similarity=0.251  Sum_probs=40.6

Q ss_pred             CCCEEEEEcCCCchhHhhc--cC---CeEEEEeCCCC----CceEEEecCCCC------C--C--CCCceeeEeecccc
Q psy10644        118 GRLVIADLGCGEAKLAAEL--TQ---HKVHSLDLVAL----NERVTSCDMTRT------P--L--KPYSVDVAVFCLSL  177 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l--~~---~~v~giDls~~----~~~~~~~d~~~l------p--~--~~~sfD~Vi~~~~l  177 (196)
                      ++.++|||||++|.|++.+  ..   ..|+|+|+.+.    ++.++++|+.+.      .  +  ....||+|++-.+.
T Consensus        23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv~~D~~~  101 (181)
T PF01728_consen   23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPLQNVSFIQGDITNPENIKDIRKLLPESGEKFDLVLSDMAP  101 (181)
T ss_dssp             TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESEEEE----
T ss_pred             cccEEEEcCCcccceeeeeeecccccceEEEEeccccccccceeeeecccchhhHHHhhhhhccccccCcceecccccc
Confidence            3589999999999999998  33   69999999883    556666665321      1  1  12689999987744

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=97.81  E-value=2.9e-05  Score=70.02  Aligned_cols=79  Identities=14%  Similarity=0.034  Sum_probs=61.5

Q ss_pred             CCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC---------------CCceEEEecCCCC--CCCCCceeeEeeccc
Q psy10644        118 GRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA---------------LNERVTSCDMTRT--PLKPYSVDVAVFCLS  176 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~---------------~~~~~~~~d~~~l--p~~~~sfD~Vi~~~~  176 (196)
                      .+..+||||||.|.+...+    +...++|+|+..               .|+.++..|+..+  -++++++|.|+.++-
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP  426 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP  426 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence            4678999999999987766    567999999988               3777777776432  267899999988876


Q ss_pred             c-c-----cc---CHHHHHHHHHHhccCC
Q psy10644        177 L-M-----GT---DLAACIKEANRILKLG  196 (196)
Q Consensus       177 l-h-----~~---d~~~~l~e~~rvLkpg  196 (196)
                      = |     ..   --..++..++++||||
T Consensus       427 DPWpKkrh~krRl~~~~fl~~~~~~Lk~g  455 (506)
T PRK01544        427 DPWIKNKQKKKRIFNKERLKILQDKLKDN  455 (506)
T ss_pred             CCCCCCCCccccccCHHHHHHHHHhcCCC
Confidence            4 3     11   2468999999999997

>KOG1500|consensus

Probab=97.80  E-value=5.4e-05  Score=64.25  Aligned_cols=78  Identities=19%  Similarity=0.129  Sum_probs=58.5

Q ss_pred             CCCEEEEEcCCCchhHhhc---cCCeEEEEeCCC---------------CCceEEEecCCCCCCCCCceeeEeecccc-c
Q psy10644        118 GRLVIADLGCGEAKLAAEL---TQHKVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDVAVFCLSL-M  178 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l---~~~~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l-h  178 (196)
                      .+..|||+|||.|.++...   ...+|++++.|.               .++.++.+-++++.+| +.+|++|+--.= +
T Consensus       177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEPMG~m  255 (517)
T KOG1500|consen  177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIISEPMGYM  255 (517)
T ss_pred             CCcEEEEecCCccHHHHHHHHhCcceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCc-hhccEEEeccchhh
Confidence            4678999999999887666   334999999987               4678888999999886 478999875432 3


Q ss_pred             cc--CHHHHHHHHHHhccCC
Q psy10644        179 GT--DLAACIKEANRILKLG  196 (196)
Q Consensus       179 ~~--d~~~~l~e~~rvLkpg  196 (196)
                      ..  -..+..-.++|.|||.
T Consensus       256 L~NERMLEsYl~Ark~l~P~  275 (517)
T KOG1500|consen  256 LVNERMLESYLHARKWLKPN  275 (517)
T ss_pred             hhhHHHHHHHHHHHhhcCCC
Confidence            22  3445555677899884

>KOG0820|consensus

Probab=97.80  E-value=8.5e-05  Score=61.27  Aligned_cols=60  Identities=25%  Similarity=0.288  Sum_probs=49.2

Q ss_pred             hcCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC----------------CCceEEEecCCCCCCCCCceeeEeecc
Q psy10644        114 RESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAVFCL  175 (196)
Q Consensus       114 ~~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~  175 (196)
                      ...+++..|||+|.|||.++..|  .+.+|+++++.+                ....++.+|....++|  .||+||++.
T Consensus        54 a~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P--~fd~cVsNl  131 (315)
T KOG0820|consen   54 ADLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP--RFDGCVSNL  131 (315)
T ss_pred             cCCCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc--ccceeeccC
Confidence            34556899999999999999999  778999999998                3578899998776654  588888743

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=97.79  E-value=7.8e-05  Score=61.45  Aligned_cols=64  Identities=16%  Similarity=0.117  Sum_probs=51.6

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC-------------CCceEEEecCCCCCCCCC-ceeeEeeccccc
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA-------------LNERVTSCDMTRTPLKPY-SVDVAVFCLSLM  178 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~-------------~~~~~~~~d~~~lp~~~~-sfD~Vi~~~~lh  178 (196)
                      ...++..|||||+|.|.++..|  .+.+|+++++++             .++.++.+|+....++.- .++.|+++.-.+
T Consensus        27 ~~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~~~~~vVaNlPY~  106 (259)
T COG0030          27 NISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLAQPYKVVANLPYN  106 (259)
T ss_pred             CCCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhhcCCCEEEEcCCCc
Confidence            3445789999999999999999  566899999998             468899999988887653 578888776543

>KOG3191|consensus

Probab=97.75  E-value=7.6e-05  Score=58.16  Aligned_cols=56  Identities=27%  Similarity=0.366  Sum_probs=43.0

Q ss_pred             CCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC--------------CCceEEEecCCCCCCCCCceeeEeecc
Q psy10644        119 RLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA--------------LNERVTSCDMTRTPLKPYSVDVAVFCL  175 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~--------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~  175 (196)
                      ...+||||||+|..+.+|     ++..+.+.|++|              ..+.++++|+.. .+..+++|+++++-
T Consensus        44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~-~l~~~~VDvLvfNP  118 (209)
T KOG3191|consen   44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLS-GLRNESVDVLVFNP  118 (209)
T ss_pred             ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHh-hhccCCccEEEECC
Confidence            567999999999887777     345788999999              246778888754 23348999998764

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=97.75  E-value=2.4e-05  Score=67.88  Aligned_cols=57  Identities=11%  Similarity=0.145  Sum_probs=43.8

Q ss_pred             CCEEEEEcCCCchhHhhc--cCCeEEEEeCCC---------------CCceEEEecCCCCC-CCCCceeeEeecc
Q psy10644        119 RLVIADLGCGEAKLAAEL--TQHKVHSLDLVA---------------LNERVTSCDMTRTP-LKPYSVDVAVFCL  175 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l--~~~~v~giDls~---------------~~~~~~~~d~~~lp-~~~~sfD~Vi~~~  175 (196)
                      +.+|||+|||+|.++..+  .+.+|+|+|+++               .++.++.+|+..+. .....||+|++.-
T Consensus       234 ~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DP  308 (374)
T TIGR02085       234 VTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNP  308 (374)
T ss_pred             CCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECC
Confidence            568999999999998888  456999999998               26788888886532 1124599987753

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.64  E-value=0.0011  Score=52.81  Aligned_cols=60  Identities=22%  Similarity=0.266  Sum_probs=47.0

Q ss_pred             CCCCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC----CCceEEEecCCCCC--------CCCCceeeEeeccc
Q psy10644        117 KGRLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA----LNERVTSCDMTRTP--------LKPYSVDVAVFCLS  176 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~----~~~~~~~~d~~~lp--------~~~~sfD~Vi~~~~  176 (196)
                      .++..|+||||-.|.|++.+     .+..|+|+|+.|    +++.++++|+..-+        +....+|+|++-.+
T Consensus        44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD~a  120 (205)
T COG0293          44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPIPGVIFLQGDITDEDTLEKLLEALGGAPVDVVLSDMA  120 (205)
T ss_pred             cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccCCCceEEeeeccCccHHHHHHHHcCCCCcceEEecCC
Confidence            45789999999999998888     233699999998    68999999986432        34455899986544

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=97.63  E-value=0.00011  Score=57.67  Aligned_cols=72  Identities=24%  Similarity=0.225  Sum_probs=54.2

Q ss_pred             EEEEEcCCCchhHhhc----cCCeEEEEeCCC---------------CCceEEEecCCCCCCCCCceeeEeecccccccC
Q psy10644        121 VIADLGCGEAKLAAEL----TQHKVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDVAVFCLSLMGTD  181 (196)
Q Consensus       121 ~ILDlGCG~G~~a~~l----~~~~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~~d  181 (196)
                      +++|||+|.|.-+..|    +..+|+-+|...               .|+.++...+++ +.....||+|++..+-   .
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRAv~---~  126 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTARAVA---P  126 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEESSS---S
T ss_pred             eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEeehhc---C
Confidence            8999999999776655    677999999998               578999999988 6667899999987763   3


Q ss_pred             HHHHHHHHHHhccCC
Q psy10644        182 LAACIKEANRILKLG  196 (196)
Q Consensus       182 ~~~~l~e~~rvLkpg  196 (196)
                      ...++.-+..+|++|
T Consensus       127 l~~l~~~~~~~l~~~  141 (184)
T PF02527_consen  127 LDKLLELARPLLKPG  141 (184)
T ss_dssp             HHHHHHHHGGGEEEE
T ss_pred             HHHHHHHHHHhcCCC
Confidence            455555566666653

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=97.62  E-value=0.00018  Score=57.96  Aligned_cols=88  Identities=13%  Similarity=0.125  Sum_probs=64.4

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc----c-CCeEEEEeCCC----------------CCceEEE-ecCCC-
Q psy10644        104 VDIIIKSIQERESKGRLVIADLGCGEAKLAAEL----T-QHKVHSLDLVA----------------LNERVTS-CDMTR-  160 (196)
Q Consensus       104 ~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l----~-~~~v~giDls~----------------~~~~~~~-~d~~~-  160 (196)
                      .-.++..+.....  ..+|||||.+.|..+..|    + ..+++++|.++                ..+.++. +|..+ 
T Consensus        47 ~g~~L~~L~~~~~--~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~  124 (219)
T COG4122          47 TGALLRLLARLSG--PKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDV  124 (219)
T ss_pred             HHHHHHHHHHhcC--CceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHH
Confidence            3455555554443  679999999999998888    3 46899999999                2456666 36533 


Q ss_pred             CC-CCCCceeeEeeccccccc-CHHHHHHHHHHhccCC
Q psy10644        161 TP-LKPYSVDVAVFCLSLMGT-DLAACIKEANRILKLG  196 (196)
Q Consensus       161 lp-~~~~sfD~Vi~~~~lh~~-d~~~~l~e~~rvLkpg  196 (196)
                      +. +..++||+|+.-..   . +.+.+|..+.++|+||
T Consensus       125 l~~~~~~~fDliFIDad---K~~yp~~le~~~~lLr~G  159 (219)
T COG4122         125 LSRLLDGSFDLVFIDAD---KADYPEYLERALPLLRPG  159 (219)
T ss_pred             HHhccCCCccEEEEeCC---hhhCHHHHHHHHHHhCCC
Confidence            22 45789999875432   3 6789999999999997

>PLN02823 spermine synthase

Probab=97.60  E-value=0.00032  Score=60.09  Aligned_cols=78  Identities=19%  Similarity=0.090  Sum_probs=56.2

Q ss_pred             CCEEEEEcCCCchhHhhcc----CCeEEEEeCCC-------------------CCceEEEecCCC-CCCCCCceeeEeec
Q psy10644        119 RLVIADLGCGEAKLAAELT----QHKVHSLDLVA-------------------LNERVTSCDMTR-TPLKPYSVDVAVFC  174 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l~----~~~v~giDls~-------------------~~~~~~~~d~~~-lp~~~~sfD~Vi~~  174 (196)
                      ..+||.||+|.|..++.+.    ..+|+.+|+++                   ++++++.+|... +....++||+|++-
T Consensus       104 pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~D  183 (336)
T PLN02823        104 PKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIGD  183 (336)
T ss_pred             CCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEec
Confidence            4689999999999988772    24899999998                   356677777644 33446789999976


Q ss_pred             cccc---c----cCHHHHHH-HHHHhccCC
Q psy10644        175 LSLM---G----TDLAACIK-EANRILKLG  196 (196)
Q Consensus       175 ~~lh---~----~d~~~~l~-e~~rvLkpg  196 (196)
                      ..=.   .    .--..+++ .+.+.|+||
T Consensus       184 ~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~  213 (336)
T PLN02823        184 LADPVEGGPCYQLYTKSFYERIVKPKLNPG  213 (336)
T ss_pred             CCCccccCcchhhccHHHHHHHHHHhcCCC
Confidence            3211   1    11346787 889999986

>TIGR00095 RNA methyltransferase, RsmD family

Probab=97.58  E-value=0.00043  Score=54.55  Aligned_cols=71  Identities=15%  Similarity=0.039  Sum_probs=45.5

Q ss_pred             CCEEEEEcCCCchhHhhc--cC-CeEEEEeCCC----------------CCceEEEecCCC-CC-C-CCC-ceeeEeecc
Q psy10644        119 RLVIADLGCGEAKLAAEL--TQ-HKVHSLDLVA----------------LNERVTSCDMTR-TP-L-KPY-SVDVAVFCL  175 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l--~~-~~v~giDls~----------------~~~~~~~~d~~~-lp-~-~~~-sfD~Vi~~~  175 (196)
                      +.++||++||+|.++..+  .+ ..|+++|.++                .++.++.+|+.. +. + ... .||+|+.--
T Consensus        50 g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DP  129 (189)
T TIGR00095        50 GAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDP  129 (189)
T ss_pred             CCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECc
Confidence            678999999999998888  33 3899999998                146778888733 22 2 122 367766544


Q ss_pred             cccccCHHHHHHHH
Q psy10644        176 SLMGTDLAACIKEA  189 (196)
Q Consensus       176 ~lh~~d~~~~l~e~  189 (196)
                      -+........+..+
T Consensus       130 Py~~~~~~~~l~~l  143 (189)
T TIGR00095       130 PFFNGALQALLELC  143 (189)
T ss_pred             CCCCCcHHHHHHHH
Confidence            33222334444433

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=97.50  E-value=0.00015  Score=57.73  Aligned_cols=76  Identities=20%  Similarity=0.170  Sum_probs=49.4

Q ss_pred             CCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC----------------CCceEEEecCCCCCCCCCceeeEeeccc
Q psy10644        117 KGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAVFCLS  176 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~  176 (196)
                      .++.+|||+-||-|.++..+    .+..|+++|++|                ..+.++.+|...+.. .+.||.|++.+-
T Consensus       100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~lp  178 (200)
T PF02475_consen  100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNLP  178 (200)
T ss_dssp             -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE--T
T ss_pred             CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECCh
Confidence            34789999999999998887    345899999998                356788899877654 789999888664


Q ss_pred             ccccCHHHHHHHHHHhccCC
Q psy10644        177 LMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       177 lh~~d~~~~l~e~~rvLkpg  196 (196)
                      -+.   ..+|..+.+++|+|
T Consensus       179 ~~~---~~fl~~~~~~~~~~  195 (200)
T PF02475_consen  179 ESS---LEFLDAALSLLKEG  195 (200)
T ss_dssp             SSG---GGGHHHHHHHEEEE
T ss_pred             HHH---HHHHHHHHHHhcCC
Confidence            222   34666677777653

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=97.48  E-value=0.00031  Score=57.69  Aligned_cols=89  Identities=8%  Similarity=0.015  Sum_probs=62.4

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC----------------CCceEEEecCCC-C
Q psy10644        104 VDIIIKSIQERESKGRLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA----------------LNERVTSCDMTR-T  161 (196)
Q Consensus       104 ~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~----------------~~~~~~~~d~~~-l  161 (196)
                      ...++..+.+...  ..+|||||+++|..+..+     .+.+|+++|.++                .++.++.++..+ +
T Consensus        67 ~g~lL~~l~~~~~--ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L  144 (247)
T PLN02589         67 EGQFLNMLLKLIN--AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVL  144 (247)
T ss_pred             HHHHHHHHHHHhC--CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHH
Confidence            3455555544333  568999999999887766     346999999988                467888888644 2


Q ss_pred             C-C-----CCCceeeEeecccccccCHHHHHHHHHHhccCC
Q psy10644        162 P-L-----KPYSVDVAVFCLSLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       162 p-~-----~~~sfD~Vi~~~~lh~~d~~~~l~e~~rvLkpg  196 (196)
                      + +     ..++||+|++-..  -.++..++..+.++|+||
T Consensus       145 ~~l~~~~~~~~~fD~iFiDad--K~~Y~~y~~~~l~ll~~G  183 (247)
T PLN02589        145 DQMIEDGKYHGTFDFIFVDAD--KDNYINYHKRLIDLVKVG  183 (247)
T ss_pred             HHHHhccccCCcccEEEecCC--HHHhHHHHHHHHHhcCCC
Confidence            2 1     1368999887644  225677778888899887

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=97.43  E-value=0.00064  Score=58.06  Aligned_cols=80  Identities=25%  Similarity=0.291  Sum_probs=62.1

Q ss_pred             CCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC---------------CCceE-EEecCCCCCCCCCceeeEeecccc-
Q psy10644        117 KGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA---------------LNERV-TSCDMTRTPLKPYSVDVAVFCLSL-  177 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~---------------~~~~~-~~~d~~~lp~~~~sfD~Vi~~~~l-  177 (196)
                      .++..|||==||||.++...  .|.+++|.|++.               ....+ ..+|+..+|+++.+||.|++---. 
T Consensus       196 ~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDPPYG  275 (347)
T COG1041         196 KRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDPPYG  275 (347)
T ss_pred             ccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecCCCC
Confidence            44789999999999997776  789999999998               12223 344999999999999999874322 


Q ss_pred             -----cccC----HHHHHHHHHHhccCC
Q psy10644        178 -----MGTD----LAACIKEANRILKLG  196 (196)
Q Consensus       178 -----h~~d----~~~~l~e~~rvLkpg  196 (196)
                           ....    ..++|..+.++||+|
T Consensus       276 rst~~~~~~l~~Ly~~~le~~~evLk~g  303 (347)
T COG1041         276 RSTKIKGEGLDELYEEALESASEVLKPG  303 (347)
T ss_pred             cccccccccHHHHHHHHHHHHHHHhhcC
Confidence                 2222    678999999999985

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=97.43  E-value=0.00027  Score=55.15  Aligned_cols=79  Identities=24%  Similarity=0.277  Sum_probs=54.1

Q ss_pred             CCCCEEEEEcCCCchhHhhc----cCCe---------EEEEeCCC----------------CCceEEEecCCCCCCCCCc
Q psy10644        117 KGRLVIADLGCGEAKLAAEL----TQHK---------VHSLDLVA----------------LNERVTSCDMTRTPLKPYS  167 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l----~~~~---------v~giDls~----------------~~~~~~~~d~~~lp~~~~s  167 (196)
                      .++..|||-=||+|.+....    ....         ++|+|+++                ..+.+.+.|+..+++.+++
T Consensus        27 ~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~~  106 (179)
T PF01170_consen   27 RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDGS  106 (179)
T ss_dssp             -TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTSB
T ss_pred             CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccCC
Confidence            44789999999999886443    3334         88999998                2467888999999988899


Q ss_pred             eeeEeecccc---ccc--C----HHHHHHHHHHhccC
Q psy10644        168 VDVAVFCLSL---MGT--D----LAACIKEANRILKL  195 (196)
Q Consensus       168 fD~Vi~~~~l---h~~--d----~~~~l~e~~rvLkp  195 (196)
                      +|+|++..-+   ...  +    +..+++++.|+|++
T Consensus       107 ~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~  143 (179)
T PF01170_consen  107 VDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP  143 (179)
T ss_dssp             SCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred             CCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence            9999987654   121  1    34567788888775

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=97.39  E-value=0.00028  Score=59.43  Aligned_cols=71  Identities=13%  Similarity=0.129  Sum_probs=51.4

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc---c--CCeEEEEeCCC-------------CCceEEEecCCCCC--C
Q psy10644        104 VDIIIKSIQERESKGRLVIADLGCGEAKLAAEL---T--QHKVHSLDLVA-------------LNERVTSCDMTRTP--L  163 (196)
Q Consensus       104 ~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l---~--~~~v~giDls~-------------~~~~~~~~d~~~lp--~  163 (196)
                      .+.+++.+   .+.++..+||.+||.|..+..+   .  ..+|+|+|.++             .++.++.+|..++.  +
T Consensus         8 l~Evl~~L---~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l   84 (296)
T PRK00050          8 LDEVVDAL---AIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVL   84 (296)
T ss_pred             HHHHHHhh---CCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHH
Confidence            34455555   3445779999999999998888   1  46999999998             15777888776542  2


Q ss_pred             CCC--ceeeEeecccc
Q psy10644        164 KPY--SVDVAVFCLSL  177 (196)
Q Consensus       164 ~~~--sfD~Vi~~~~l  177 (196)
                      +++  +||+|++.+..
T Consensus        85 ~~~~~~vDgIl~DLGv  100 (296)
T PRK00050         85 AEGLGKVDGILLDLGV  100 (296)
T ss_pred             HcCCCccCEEEECCCc
Confidence            222  79999987765

>KOG1661|consensus

Probab=97.34  E-value=0.00048  Score=54.93  Aligned_cols=72  Identities=14%  Similarity=0.150  Sum_probs=51.1

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc------cCCeEEEEeCCC-------------------------CCce
Q psy10644        104 VDIIIKSIQERESKGRLVIADLGCGEAKLAAEL------TQHKVHSLDLVA-------------------------LNER  152 (196)
Q Consensus       104 ~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l------~~~~v~giDls~-------------------------~~~~  152 (196)
                      ...++++|... ..++...||+|.|+|.++..+      .+..++|||.-+                         .++.
T Consensus        69 ha~~le~L~~~-L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~  147 (237)
T KOG1661|consen   69 HATALEYLDDH-LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELS  147 (237)
T ss_pred             HHHHHHHHHHh-hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceE
Confidence            34455665421 234899999999999886555      234558988765                         3567


Q ss_pred             EEEecCCCCCCCCCceeeEeeccc
Q psy10644        153 VTSCDMTRTPLKPYSVDVAVFCLS  176 (196)
Q Consensus       153 ~~~~d~~~lp~~~~sfD~Vi~~~~  176 (196)
                      ++++|....--+...||.|++-.+
T Consensus       148 ivvGDgr~g~~e~a~YDaIhvGAa  171 (237)
T KOG1661|consen  148 IVVGDGRKGYAEQAPYDAIHVGAA  171 (237)
T ss_pred             EEeCCccccCCccCCcceEEEccC
Confidence            888888777667789999988754

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=97.31  E-value=0.00028  Score=61.05  Aligned_cols=41  Identities=15%  Similarity=0.248  Sum_probs=34.0

Q ss_pred             CEEEEEcCCCchhHhhcc--CCeEEEEeCCC---------------CCceEEEecCCC
Q psy10644        120 LVIADLGCGEAKLAAELT--QHKVHSLDLVA---------------LNERVTSCDMTR  160 (196)
Q Consensus       120 ~~ILDlGCG~G~~a~~l~--~~~v~giDls~---------------~~~~~~~~d~~~  160 (196)
                      .+|||++||+|.++..+.  ..+|+|+|+++               .++.++.+|+..
T Consensus       208 ~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~  265 (362)
T PRK05031        208 GDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEE  265 (362)
T ss_pred             CeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence            479999999999999883  34899999998               267788888754

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=97.29  E-value=0.00098  Score=55.05  Aligned_cols=71  Identities=20%  Similarity=0.232  Sum_probs=52.4

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC-------------CCceEEEecCCCCCCCC---
Q psy10644        104 VDIIIKSIQERESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA-------------LNERVTSCDMTRTPLKP---  165 (196)
Q Consensus       104 ~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~-------------~~~~~~~~d~~~lp~~~---  165 (196)
                      .+.+++.+   ...++..|||||+|.|.++..|  .+.+|+++|+++             .++.++.+|+..+....   
T Consensus        19 ~~~Iv~~~---~~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~~~   95 (262)
T PF00398_consen   19 ADKIVDAL---DLSEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDLLK   95 (262)
T ss_dssp             HHHHHHHH---TCGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGHCS
T ss_pred             HHHHHHhc---CCCCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHhhc
Confidence            34445544   3345789999999999999999  457999999998             47899999998877654   


Q ss_pred             CceeeEeecccc
Q psy10644        166 YSVDVAVFCLSL  177 (196)
Q Consensus       166 ~sfD~Vi~~~~l  177 (196)
                      +....|+++.-.
T Consensus        96 ~~~~~vv~NlPy  107 (262)
T PF00398_consen   96 NQPLLVVGNLPY  107 (262)
T ss_dssp             SSEEEEEEEETG
T ss_pred             CCceEEEEEecc
Confidence            345566665544

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=97.29  E-value=0.0005  Score=61.15  Aligned_cols=77  Identities=19%  Similarity=0.196  Sum_probs=58.7

Q ss_pred             CEEEEEcCCCchhHhhccCCeEEEEeCCC---C---------CceEEEecC-CCCCCCCCceeeEeecccc-ccc---CH
Q psy10644        120 LVIADLGCGEAKLAAELTQHKVHSLDLVA---L---------NERVTSCDM-TRTPLKPYSVDVAVFCLSL-MGT---DL  182 (196)
Q Consensus       120 ~~ILDlGCG~G~~a~~l~~~~v~giDls~---~---------~~~~~~~d~-~~lp~~~~sfD~Vi~~~~l-h~~---d~  182 (196)
                      ..|+|+.+|.|.||..|....|..+...+   +         +.--+..|. +.++.-+.+||+|++...+ +..   +.
T Consensus       367 RNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~~~ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~~~rC~~  446 (506)
T PF03141_consen  367 RNVMDMNAGYGGFAAALIDDPVWVMNVVPVSGPNTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFSLYKDRCEM  446 (506)
T ss_pred             eeeeeecccccHHHHHhccCCceEEEecccCCCCcchhhhhcccchhccchhhccCCCCcchhheehhhhhhhhcccccH
Confidence            57999999999999999666666666555   1         111122343 5677778999999999888 433   78


Q ss_pred             HHHHHHHHHhccCC
Q psy10644        183 AACIKEANRILKLG  196 (196)
Q Consensus       183 ~~~l~e~~rvLkpg  196 (196)
                      ...+-|+-|+||||
T Consensus       447 ~~illEmDRILRP~  460 (506)
T PF03141_consen  447 EDILLEMDRILRPG  460 (506)
T ss_pred             HHHHHHhHhhcCCC
Confidence            99999999999997

; GO: 0008168 methyltransferase activity

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=97.28  E-value=0.00032  Score=60.52  Aligned_cols=41  Identities=15%  Similarity=0.261  Sum_probs=33.9

Q ss_pred             CEEEEEcCCCchhHhhcc--CCeEEEEeCCC---------------CCceEEEecCCC
Q psy10644        120 LVIADLGCGEAKLAAELT--QHKVHSLDLVA---------------LNERVTSCDMTR  160 (196)
Q Consensus       120 ~~ILDlGCG~G~~a~~l~--~~~v~giDls~---------------~~~~~~~~d~~~  160 (196)
                      .+|||++||+|.++..+.  ..+|+|+|+++               .++.++.+|+..
T Consensus       199 ~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~  256 (353)
T TIGR02143       199 GDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE  256 (353)
T ss_pred             CcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence            469999999999999883  34899999998               267788888755

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>KOG3987|consensus

Probab=97.27  E-value=4.5e-05  Score=60.68  Aligned_cols=77  Identities=13%  Similarity=0.143  Sum_probs=57.6

Q ss_pred             CCEEEEEcCCCchhHhhccCC--eEEEEeCCC------CCceEEEecCCCCCCCCCceeeEeecccc-cccCHHHHHHHH
Q psy10644        119 RLVIADLGCGEAKLAAELTQH--KVHSLDLVA------LNERVTSCDMTRTPLKPYSVDVAVFCLSL-MGTDLAACIKEA  189 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l~~~--~v~giDls~------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l-h~~d~~~~l~e~  189 (196)
                      ..++||+|+|.|.++..+.+.  +|++.++|.      ....+-+....+..-.+-.+|+|.|...| -+.++-+.++.+
T Consensus       113 ~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk~ynVl~~~ew~~t~~k~dli~clNlLDRc~~p~kLL~Di  192 (288)
T KOG3987|consen  113 PVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKKNYNVLTEIEWLQTDVKLDLILCLNLLDRCFDPFKLLEDI  192 (288)
T ss_pred             CeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhhcCCceeeehhhhhcCceeehHHHHHHHHhhcChHHHHHHH
Confidence            478999999999999999554  789999888      11122222222222234579999999999 577999999999


Q ss_pred             HHhccC
Q psy10644        190 NRILKL  195 (196)
Q Consensus       190 ~rvLkp  195 (196)
                      +-+|+|
T Consensus       193 ~~vl~p  198 (288)
T KOG3987|consen  193 HLVLAP  198 (288)
T ss_pred             HHHhcc
Confidence            999988

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.25  E-value=0.0011  Score=54.71  Aligned_cols=78  Identities=22%  Similarity=0.384  Sum_probs=50.7

Q ss_pred             CCCEEEEEcCCCchhHhhc--cC--CeEEEEeCCC-------------------------------------------CC
Q psy10644        118 GRLVIADLGCGEAKLAAEL--TQ--HKVHSLDLVA-------------------------------------------LN  150 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l--~~--~~v~giDls~-------------------------------------------~~  150 (196)
                      ++.++||||||.-.. ..|  ..  .+|+..|.++                                           ..
T Consensus        56 ~g~~llDiGsGPtiy-~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~  134 (256)
T PF01234_consen   56 KGETLLDIGSGPTIY-QLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRA  134 (256)
T ss_dssp             -EEEEEEES-TT--G-GGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHH-hhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHh
Confidence            467899999998544 333  12  2788888877                                           01


Q ss_pred             c-eEEEecCCCC-CCCC-----CceeeEeeccccc--cc---CHHHHHHHHHHhccCC
Q psy10644        151 E-RVTSCDMTRT-PLKP-----YSVDVAVFCLSLM--GT---DLAACIKEANRILKLG  196 (196)
Q Consensus       151 ~-~~~~~d~~~l-p~~~-----~sfD~Vi~~~~lh--~~---d~~~~l~e~~rvLkpg  196 (196)
                      + .++.||+... |+..     ..||+|+++++|-  ..   ....+++.+.++||||
T Consensus       135 Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpG  192 (256)
T PF01234_consen  135 VKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPG  192 (256)
T ss_dssp             EEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEE
T ss_pred             hceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCC
Confidence            2 4778998653 3433     3599999999993  22   5678899999999997

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=97.21  E-value=0.0069  Score=51.59  Aligned_cols=79  Identities=14%  Similarity=0.072  Sum_probs=51.2

Q ss_pred             CCCEEEEEcCCCchhHhhc--------cCCeEEEEeCCC---------------CCceE--EEecCCC----CCC--CCC
Q psy10644        118 GRLVIADLGCGEAKLAAEL--------TQHKVHSLDLVA---------------LNERV--TSCDMTR----TPL--KPY  166 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l--------~~~~v~giDls~---------------~~~~~--~~~d~~~----lp~--~~~  166 (196)
                      ++..|+|+|||.|.=++.|        ....++++|+|.               +.+.+  +.+|...    ++-  ...
T Consensus        76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~  155 (319)
T TIGR03439        76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRS  155 (319)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccC
Confidence            3668999999999765544        135799999997               23433  5566533    221  123


Q ss_pred             ceeeEeecc-ccc-cc--CHHHHHHHHHH-hccCC
Q psy10644        167 SVDVAVFCL-SLM-GT--DLAACIKEANR-ILKLG  196 (196)
Q Consensus       167 sfD~Vi~~~-~lh-~~--d~~~~l~e~~r-vLkpg  196 (196)
                      ...+|++.. ++. ..  +...+|+++++ .|+||
T Consensus       156 ~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~  190 (319)
T TIGR03439       156 RPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPS  190 (319)
T ss_pred             CccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCC
Confidence            456666655 443 22  55678999999 99886

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>KOG4589|consensus

Probab=97.21  E-value=0.00097  Score=52.36  Aligned_cols=61  Identities=18%  Similarity=0.198  Sum_probs=46.0

Q ss_pred             CCCCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC----CCceEEEe-cCCCC--------CCCCCceeeEeecccc
Q psy10644        117 KGRLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA----LNERVTSC-DMTRT--------PLKPYSVDVAVFCLSL  177 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~----~~~~~~~~-d~~~l--------p~~~~sfD~Vi~~~~l  177 (196)
                      .++.+|||+||-.|.|++-.     ++..|.|+|+-.    .++.++.+ |+.+-        .+|+..+|+|++-++-
T Consensus        68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~VdvVlSDMap  146 (232)
T KOG4589|consen   68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEPPEGATIIQGNDVTDPETYRKIFEALPNRPVDVVLSDMAP  146 (232)
T ss_pred             CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccCCCCcccccccccCCHHHHHHHHHhCCCCcccEEEeccCC
Confidence            45889999999999998776     566899999876    56666666 55431        2567889999876554

>KOG2352|consensus

Probab=97.15  E-value=0.00092  Score=59.22  Aligned_cols=77  Identities=23%  Similarity=0.410  Sum_probs=63.4

Q ss_pred             CEEEEEcCCCchhHhhc--cC-CeEEEEeCCC--------------CCceEEEecCCCCCCCCCceeeEeeccccccc--
Q psy10644        120 LVIADLGCGEAKLAAEL--TQ-HKVHSLDLVA--------------LNERVTSCDMTRTPLKPYSVDVAVFCLSLMGT--  180 (196)
Q Consensus       120 ~~ILDlGCG~G~~a~~l--~~-~~v~giDls~--------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~~--  180 (196)
                      .++|-+|||.-.+...+  .+ ..|+.+|+|+              ....+...|+..+.|++++||+|+.-..++..  
T Consensus        50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~  129 (482)
T KOG2352|consen   50 FKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFE  129 (482)
T ss_pred             ceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCccccccC
Confidence            38999999999998888  23 3899999999              34678899999999999999999998888422  


Q ss_pred             C---------HHHHHHHHHHhccCC
Q psy10644        181 D---------LAACIKEANRILKLG  196 (196)
Q Consensus       181 d---------~~~~l~e~~rvLkpg  196 (196)
                      +         ....+.+++|+|++|
T Consensus       130 de~a~~~~~~v~~~~~eVsrvl~~~  154 (482)
T KOG2352|consen  130 DEDALLNTAHVSNMLDEVSRVLAPG  154 (482)
T ss_pred             CchhhhhhHHhhHHHhhHHHHhccC
Confidence            2         234688999999986

>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.15  E-value=0.00017  Score=54.79  Aligned_cols=72  Identities=17%  Similarity=0.195  Sum_probs=50.1

Q ss_pred             EEEEEcCCCchhHhhccCCeEEEEeCCCCCceEEEecCCCCCCCCCceeeEeecccc-ccc--CHHHHHHHHHHhccCC
Q psy10644        121 VIADLGCGEAKLAAELTQHKVHSLDLVALNERVTSCDMTRTPLKPYSVDVAVFCLSL-MGT--DLAACIKEANRILKLG  196 (196)
Q Consensus       121 ~ILDlGCG~G~~a~~l~~~~v~giDls~~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l-h~~--d~~~~l~e~~rvLkpg  196 (196)
                      -.+-||||.=.+.   +++..+-+.-.+ .+.+++-.....+|.++++|+|.+.+++ |.+  .-..++++++|+||||
T Consensus         5 ~kv~ig~G~~r~n---pgWi~~d~ed~~-~vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~   79 (185)
T COG4627           5 EKVKIGAGGKRVN---PGWIITDVEDRP-EVDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPG   79 (185)
T ss_pred             eEEEEeccccccC---CCceeeehhccc-ccchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcC
Confidence            3678999975443   344333222222 3343333335578999999999999999 876  6778999999999997

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=97.11  E-value=0.0012  Score=57.65  Aligned_cols=75  Identities=23%  Similarity=0.157  Sum_probs=51.6

Q ss_pred             CCEEEEEcCCCchhHhhcc---C-CeEEEEeCCC---------------CCceEEEecCCCCCCCCCceeeEeecccccc
Q psy10644        119 RLVIADLGCGEAKLAAELT---Q-HKVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDVAVFCLSLMG  179 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l~---~-~~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~  179 (196)
                      +.+|||++||+|.++..+.   + ..|+++|+++               .++.+...|+..+......||+|++.- . +
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP-~-G  135 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP-F-G  135 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC-C-C
Confidence            4689999999999988872   2 3899999998               234577777755321145799988743 2 2


Q ss_pred             cCHHHHHHHHHHhccCC
Q psy10644        180 TDLAACIKEANRILKLG  196 (196)
Q Consensus       180 ~d~~~~l~e~~rvLkpg  196 (196)
                       ....++..+.+.+++|
T Consensus       136 -s~~~~l~~al~~~~~~  151 (382)
T PRK04338        136 -SPAPFLDSAIRSVKRG  151 (382)
T ss_pred             -CcHHHHHHHHHHhcCC
Confidence             2456777766666664

>KOG3178|consensus

Probab=97.05  E-value=0.0037  Score=53.32  Aligned_cols=75  Identities=19%  Similarity=0.174  Sum_probs=55.0

Q ss_pred             CCEEEEEcCCCchhHhhc-c-CCeEEEEeCCC-----------CCceEEEecCCCCCCCCCceeeEeecccc-ccc--CH
Q psy10644        119 RLVIADLGCGEAKLAAEL-T-QHKVHSLDLVA-----------LNERVTSCDMTRTPLKPYSVDVAVFCLSL-MGT--DL  182 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l-~-~~~v~giDls~-----------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l-h~~--d~  182 (196)
                      -...+|+|.|.|..+..+ . -.+|-+++...           +++..+.+|+..- .|.+  |+|++.++| |++  |-
T Consensus       178 v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~-~P~~--daI~mkWiLhdwtDedc  254 (342)
T KOG3178|consen  178 VNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQD-TPKG--DAIWMKWILHDWTDEDC  254 (342)
T ss_pred             CceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhcCCcceeccccccc-CCCc--CeEEEEeecccCChHHH
Confidence            367899999999998888 2 12355555443           2356777777443 4433  599999999 566  78


Q ss_pred             HHHHHHHHHhccCC
Q psy10644        183 AACIKEANRILKLG  196 (196)
Q Consensus       183 ~~~l~e~~rvLkpg  196 (196)
                      .++|++++.-|+||
T Consensus       255 vkiLknC~~sL~~~  268 (342)
T KOG3178|consen  255 VKILKNCKKSLPPG  268 (342)
T ss_pred             HHHHHHHHHhCCCC
Confidence            89999999999986

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=97.04  E-value=0.0079  Score=48.37  Aligned_cols=58  Identities=17%  Similarity=0.113  Sum_probs=44.8

Q ss_pred             CCEEEEEcCCCchhHhhc----cCCeEEEEeCCC---------------CCceEEEecCCCCCCCCCceeeEeeccc
Q psy10644        119 RLVIADLGCGEAKLAAEL----TQHKVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDVAVFCLS  176 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l----~~~~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~  176 (196)
                      ..+++|||.|.|.-+..+    +..+|+-+|...               .|+.++.+.++++.-....||+|++..+
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAv  144 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAV  144 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehc
Confidence            479999999999776554    566899999877               5788998888887642222999998654

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=97.04  E-value=0.0043  Score=55.51  Aligned_cols=82  Identities=18%  Similarity=0.197  Sum_probs=56.5

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC---------------CCceEEEecCCCCC-CCCCceeeEee
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA---------------LNERVTSCDMTRTP-LKPYSVDVAVF  173 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~---------------~~~~~~~~d~~~lp-~~~~sfD~Vi~  173 (196)
                      .+.++.+|||++||.|.=+-.+     ....|+++|+++               .++.+...|...++ ...+.||.|+.
T Consensus       110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILv  189 (470)
T PRK11933        110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILL  189 (470)
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEE
Confidence            3456889999999999765555     235899999998               35666777766542 33467999984


Q ss_pred             ---cccc-ccc-C------------------HHHHHHHHHHhccCC
Q psy10644        174 ---CLSL-MGT-D------------------LAACIKEANRILKLG  196 (196)
Q Consensus       174 ---~~~l-h~~-d------------------~~~~l~e~~rvLkpg  196 (196)
                         |... +.- +                  ..++|..+.++||||
T Consensus       190 DaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpG  235 (470)
T PRK11933        190 DAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPG  235 (470)
T ss_pred             cCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence               2211 111 1                  156789999999997

>PRK00536 speE spermidine synthase; Provisional

Probab=97.03  E-value=0.0047  Score=51.17  Aligned_cols=72  Identities=15%  Similarity=0.025  Sum_probs=52.9

Q ss_pred             CCCEEEEEcCCCchhHhhccCC--eEEEEeCCC-------------------CCceEEEecCCCCCCCCCceeeEeeccc
Q psy10644        118 GRLVIADLGCGEAKLAAELTQH--KVHSLDLVA-------------------LNERVTSCDMTRTPLKPYSVDVAVFCLS  176 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l~~~--~v~giDls~-------------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~  176 (196)
                      ...+||=||.|.|..++.+..+  +|+-+|+++                   ++++++. .+.  ....++||+||.-..
T Consensus        72 ~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~~~--~~~~~~fDVIIvDs~  148 (262)
T PRK00536         72 ELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-QLL--DLDIKKYDLIICLQE  148 (262)
T ss_pred             CCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-hhh--hccCCcCCEEEEcCC
Confidence            3579999999999999999433  899999988                   3444443 111  112368999986632


Q ss_pred             ccccCHHHHHHHHHHhccCC
Q psy10644        177 LMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       177 lh~~d~~~~l~e~~rvLkpg  196 (196)
                          ..+.+++.++|+|+||
T Consensus       149 ----~~~~fy~~~~~~L~~~  164 (262)
T PRK00536        149 ----PDIHKIDGLKRMLKED  164 (262)
T ss_pred             ----CChHHHHHHHHhcCCC
Confidence                4478889999999986

>KOG1709|consensus

Probab=97.01  E-value=0.0028  Score=50.92  Aligned_cols=96  Identities=13%  Similarity=0.120  Sum_probs=63.5

Q ss_pred             hcCCCChHHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhcc---CCeEEEEeCCC--------------CCceEEEecCC
Q psy10644         97 TQWPINPVDIIIKSIQERESKGRLVIADLGCGEAKLAAELT---QHKVHSLDLVA--------------LNERVTSCDMT  159 (196)
Q Consensus        97 ~~w~~~~~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l~---~~~v~giDls~--------------~~~~~~~~d~~  159 (196)
                      .+|...-.....+.+.    .++.+||.||-|-|...-.++   ..+=+-++..|              .|+-+..+--+
T Consensus        84 m~WEtpiMha~A~ai~----tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~We  159 (271)
T KOG1709|consen   84 MRWETPIMHALAEAIS----TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWE  159 (271)
T ss_pred             hhhhhHHHHHHHHHHh----hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchH
Confidence            3663333333333333    457899999999999877773   33334455555              35544444433


Q ss_pred             CC--CCCCCceeeEeecccc-cccCHHHHHHHHHHhccCC
Q psy10644        160 RT--PLKPYSVDVAVFCLSL-MGTDLAACIKEANRILKLG  196 (196)
Q Consensus       160 ~l--p~~~~sfD~Vi~~~~l-h~~d~~~~l~e~~rvLkpg  196 (196)
                      +.  .++++.||.|+.---- |..|...+...+.|+|||+
T Consensus       160 Dvl~~L~d~~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~  199 (271)
T KOG1709|consen  160 DVLNTLPDKHFDGIYYDTYSELYEDLRHFHQHVVRLLKPE  199 (271)
T ss_pred             hhhccccccCcceeEeechhhHHHHHHHHHHHHhhhcCCC
Confidence            32  3678899998764433 7779999999999999996

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=97.00  E-value=0.003  Score=52.84  Aligned_cols=77  Identities=13%  Similarity=0.053  Sum_probs=57.3

Q ss_pred             CEEEEEcCCCchhHhhcc----CCeEEEEeCCC-------------------CCceEEEecCCC-CCCCCCceeeEeecc
Q psy10644        120 LVIADLGCGEAKLAAELT----QHKVHSLDLVA-------------------LNERVTSCDMTR-TPLKPYSVDVAVFCL  175 (196)
Q Consensus       120 ~~ILDlGCG~G~~a~~l~----~~~v~giDls~-------------------~~~~~~~~d~~~-lp~~~~sfD~Vi~~~  175 (196)
                      .+||-||-|.|..++.+.    -.+++.+|+.+                   +++.++..|..+ +.-...+||+|++-.
T Consensus        78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~  157 (282)
T COG0421          78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS  157 (282)
T ss_pred             CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence            599999999999999993    24899999998                   355677777644 232234899988755


Q ss_pred             ccc-cc----CHHHHHHHHHHhccCC
Q psy10644        176 SLM-GT----DLAACIKEANRILKLG  196 (196)
Q Consensus       176 ~lh-~~----d~~~~l~e~~rvLkpg  196 (196)
                      .=. +.    --..+++.++|+|+++
T Consensus       158 tdp~gp~~~Lft~eFy~~~~~~L~~~  183 (282)
T COG0421         158 TDPVGPAEALFTEEFYEGCRRALKED  183 (282)
T ss_pred             CCCCCcccccCCHHHHHHHHHhcCCC
Confidence            433 11    2478999999999985

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=96.94  E-value=0.0033  Score=44.92  Aligned_cols=65  Identities=20%  Similarity=0.361  Sum_probs=41.3

Q ss_pred             HHHHHHHHHH-hhhhcCCCC--hHHHHHHH----------HHh-hcCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCC
Q psy10644         84 SFEAYHEGFK-KQVTQWPIN--PVDIIIKS----------IQE-RESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLV  147 (196)
Q Consensus        84 ~f~~y~~~y~-~~~~~w~~~--~~~~~~~~----------l~~-~~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls  147 (196)
                      .|......|. ..++.|++.  |...+.+-          ... ....+...-+|||||.|.+...|  .|+.-.|+|.-
T Consensus        10 ~Y~~LK~kYa~~lv~~W~E~TdP~K~VfEDlaIAAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~R   89 (112)
T PF07757_consen   10 TYQRLKEKYARWLVDNWPESTDPQKHVFEDLAIAAYLIELWRDMYGEQKFQGFVDLGCGNGLLVYILNSEGYPGWGIDAR   89 (112)
T ss_pred             HHHHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHHHHhcccCCCCCCceEEccCCchHHHHHHHhCCCCccccccc
Confidence            3444555563 556678753  44433322          111 12223567999999999998888  67788999986


Q ss_pred             C
Q psy10644        148 A  148 (196)
Q Consensus       148 ~  148 (196)
                      .
T Consensus        90 ~   90 (112)
T PF07757_consen   90 R   90 (112)
T ss_pred             c
Confidence            6

; GO: 0008168 methyltransferase activity

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=96.94  E-value=0.0037  Score=49.23  Aligned_cols=74  Identities=20%  Similarity=0.254  Sum_probs=53.2

Q ss_pred             CCEEEEEcCCCchhHhhc--cCCeEEEEeCCC---------------CCceEEEecCCCCCCCCCceeeEeeccc---cc
Q psy10644        119 RLVIADLGCGEAKLAAEL--TQHKVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDVAVFCLS---LM  178 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l--~~~~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~---lh  178 (196)
                      .....|+|+|+|.++...  ...+|++++..|               .|+.++.+|+....|  ...|+|+|-+.   |.
T Consensus        33 ~d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEmlDTaLi  110 (252)
T COG4076          33 EDTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEMLDTALI  110 (252)
T ss_pred             hhceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc--cccceeHHHHhhHHhh
Confidence            367999999999998776  344999999998               367888999888877  45688776432   12


Q ss_pred             ccCHHHHHHHHHHhcc
Q psy10644        179 GTDLAACIKEANRILK  194 (196)
Q Consensus       179 ~~d~~~~l~e~~rvLk  194 (196)
                      .......++.+...||
T Consensus       111 ~E~qVpV~n~vleFLr  126 (252)
T COG4076         111 EEKQVPVINAVLEFLR  126 (252)
T ss_pred             cccccHHHHHHHHHhh
Confidence            2245556666666655

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=96.87  E-value=0.0041  Score=51.81  Aligned_cols=89  Identities=13%  Similarity=0.092  Sum_probs=50.1

Q ss_pred             HHHHHHHHHhhcC-CCCCEEEEEcCCCchhHhhc----c-CCeEEEEeCCCC-------------CceE--EEecC--CC
Q psy10644        104 VDIIIKSIQERES-KGRLVIADLGCGEAKLAAEL----T-QHKVHSLDLVAL-------------NERV--TSCDM--TR  160 (196)
Q Consensus       104 ~~~~~~~l~~~~~-~~~~~ILDlGCG~G~~a~~l----~-~~~v~giDls~~-------------~~~~--~~~d~--~~  160 (196)
                      +..++..|....+ -...+|||+|||.|..+-.+    . -.+++++|.|+.             +...  .....  ..
T Consensus        18 ~~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~   97 (274)
T PF09243_consen   18 VYRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDF   97 (274)
T ss_pred             HHHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhccc
Confidence            3344555544322 23568999999999664433    2 348999999981             1000  00111  11


Q ss_pred             CCCCCCceeeEeeccccccc---CHHHHHHHHHHhcc
Q psy10644        161 TPLKPYSVDVAVFCLSLMGT---DLAACIKEANRILK  194 (196)
Q Consensus       161 lp~~~~sfD~Vi~~~~lh~~---d~~~~l~e~~rvLk  194 (196)
                      .++.  ..|+|++.++|...   ....+++.+.+.+.
T Consensus        98 ~~~~--~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~  132 (274)
T PF09243_consen   98 LPFP--PDDLVIASYVLNELPSAARAELVRSLWNKTA  132 (274)
T ss_pred             ccCC--CCcEEEEehhhhcCCchHHHHHHHHHHHhcc
Confidence            2232  23999999999433   45556666655443

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=96.80  E-value=0.0031  Score=51.75  Aligned_cols=79  Identities=18%  Similarity=0.122  Sum_probs=55.2

Q ss_pred             CCCEEEEEcCCCchhHhhcc----CCeEEEEeCCC-------------------CCceEEEecCCC-CCCCCC-ceeeEe
Q psy10644        118 GRLVIADLGCGEAKLAAELT----QHKVHSLDLVA-------------------LNERVTSCDMTR-TPLKPY-SVDVAV  172 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l~----~~~v~giDls~-------------------~~~~~~~~d~~~-lp~~~~-sfD~Vi  172 (196)
                      +..+||=||-|.|..++.+.    ..+|+.+|+++                   ++++++..|... +.-..+ .||+|+
T Consensus        76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi  155 (246)
T PF01564_consen   76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII  155 (246)
T ss_dssp             ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred             CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence            36799999999999999983    24899999998                   367888888643 222233 899998


Q ss_pred             ecccc-ccc----CHHHHHHHHHHhccCC
Q psy10644        173 FCLSL-MGT----DLAACIKEANRILKLG  196 (196)
Q Consensus       173 ~~~~l-h~~----d~~~~l~e~~rvLkpg  196 (196)
                      .-..- ...    --..+++.+.++|+||
T Consensus       156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~~  184 (246)
T PF01564_consen  156 VDLTDPDGPAPNLFTREFYQLCKRRLKPD  184 (246)
T ss_dssp             EESSSTTSCGGGGSSHHHHHHHHHHEEEE
T ss_pred             EeCCCCCCCcccccCHHHHHHHHhhcCCC
Confidence            74432 111    2468999999999875

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>KOG2798|consensus

Probab=96.77  E-value=0.0039  Score=52.63  Aligned_cols=93  Identities=22%  Similarity=0.246  Sum_probs=60.0

Q ss_pred             HHHHHHHHHhhcCC-----CCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC----------------------------
Q psy10644        104 VDIIIKSIQERESK-----GRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA----------------------------  148 (196)
Q Consensus       104 ~~~~~~~l~~~~~~-----~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~----------------------------  148 (196)
                      +..+++.|..+.+.     ...+||-=|||.|+++..|  .+..+-|-+.|.                            
T Consensus       131 ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~  210 (369)
T KOG2798|consen  131 YKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQY  210 (369)
T ss_pred             hhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeecc
Confidence            45678888776553     3467888899999998887  233333323322                            


Q ss_pred             ---------------------------CCceEEEecCCCC---CCCCCceeeEeeccccc-ccCHHHHHHHHHHhccCC
Q psy10644        149 ---------------------------LNERVTSCDMTRT---PLKPYSVDVAVFCLSLM-GTDLAACIKEANRILKLG  196 (196)
Q Consensus       149 ---------------------------~~~~~~~~d~~~l---p~~~~sfD~Vi~~~~lh-~~d~~~~l~e~~rvLkpg  196 (196)
                                                 .......+|..+.   +-..++||+|+.|+-+- ..|...+|..+..+||||
T Consensus       211 sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~G  289 (369)
T KOG2798|consen  211 SNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPG  289 (369)
T ss_pred             ccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCC
Confidence                                       0111223443221   12235799999997663 448999999999999997

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=96.76  E-value=0.0051  Score=45.95  Aligned_cols=32  Identities=28%  Similarity=0.458  Sum_probs=27.0

Q ss_pred             CCCCEEEEEcCCCchhHhhcc--------CCeEEEEeCCC
Q psy10644        117 KGRLVIADLGCGEAKLAAELT--------QHKVHSLDLVA  148 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l~--------~~~v~giDls~  148 (196)
                      .+...|+|+|||.|.++..|.        +.+|+++|.++
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~   63 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNE   63 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCc
Confidence            346799999999999988872        35999999998

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=96.62  E-value=0.00083  Score=51.73  Aligned_cols=54  Identities=22%  Similarity=0.257  Sum_probs=36.2

Q ss_pred             EEEEEcCCCchhHhhc--cCCeEEEEeCCC----------------CCceEEEecCCCCC--CCCCc-eeeEeec
Q psy10644        121 VIADLGCGEAKLAAEL--TQHKVHSLDLVA----------------LNERVTSCDMTRTP--LKPYS-VDVAVFC  174 (196)
Q Consensus       121 ~ILDlGCG~G~~a~~l--~~~~v~giDls~----------------~~~~~~~~d~~~lp--~~~~s-fD~Vi~~  174 (196)
                      +|+|+-||.|..+..|  ...+|+++|+++                .++.++.+|..++.  +.... +|+|+++
T Consensus         2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS   76 (163)
T PF09445_consen    2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS   76 (163)
T ss_dssp             EEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred             EEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence            6999999999999888  344899999999                37899999975531  22222 8999865

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=96.60  E-value=0.0052  Score=53.01  Aligned_cols=40  Identities=25%  Similarity=0.348  Sum_probs=29.9

Q ss_pred             EEEEEcCCCchhHhhcc--CCeEEEEeCCC---------------CCceEEEecCCC
Q psy10644        121 VIADLGCGEAKLAAELT--QHKVHSLDLVA---------------LNERVTSCDMTR  160 (196)
Q Consensus       121 ~ILDlGCG~G~~a~~l~--~~~v~giDls~---------------~~~~~~~~d~~~  160 (196)
                      .|||+=||.|.++..|.  ..+|+|+|+++               .|+.|+..++++
T Consensus       199 ~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~  255 (352)
T PF05958_consen  199 DVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAED  255 (352)
T ss_dssp             EEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHH
T ss_pred             cEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccc
Confidence            89999999999999993  45999999997               478888776644

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=96.59  E-value=0.015  Score=48.56  Aligned_cols=77  Identities=16%  Similarity=0.229  Sum_probs=46.7

Q ss_pred             CEEEEEcCCCchhHhhc------cCCeEEEEeCCC-----------------CCceEEEecCCCCCCCCCceeeEeeccc
Q psy10644        120 LVIADLGCGEAKLAAEL------TQHKVHSLDLVA-----------------LNERVTSCDMTRTPLKPYSVDVAVFCLS  176 (196)
Q Consensus       120 ~~ILDlGCG~G~~a~~l------~~~~v~giDls~-----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~  176 (196)
                      .+|+=||||.==++..+      .+..|+++|+++                 ..+.|+.+|....+..-..||+|+...-
T Consensus       122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAal  201 (276)
T PF03059_consen  122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAAL  201 (276)
T ss_dssp             -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-TT
T ss_pred             ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhhh
Confidence            59999999965443332      356899999998                 4678999998776655578999877665


Q ss_pred             c-ccc-CHHHHHHHHHHhccCC
Q psy10644        177 L-MGT-DLAACIKEANRILKLG  196 (196)
Q Consensus       177 l-h~~-d~~~~l~e~~rvLkpg  196 (196)
                      . +.. +..+.|..+.+.++||
T Consensus       202 Vg~~~e~K~~Il~~l~~~m~~g  223 (276)
T PF03059_consen  202 VGMDAEPKEEILEHLAKHMAPG  223 (276)
T ss_dssp             -S----SHHHHHHHHHHHS-TT
T ss_pred             cccccchHHHHHHHHHhhCCCC
Confidence            5 544 8999999999999987

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=96.47  E-value=0.0032  Score=53.01  Aligned_cols=63  Identities=13%  Similarity=0.134  Sum_probs=38.1

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc-----------cCCeEEEEeCCC-----------------CCceEEEecCCCCCCC--
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL-----------TQHKVHSLDLVA-----------------LNERVTSCDMTRTPLK--  164 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l-----------~~~~v~giDls~-----------------~~~~~~~~d~~~lp~~--  164 (196)
                      .+.++.+|+|-.||+|.+...+           ....++|+|+++                 .+..+...|....+..  
T Consensus        43 ~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~  122 (311)
T PF02384_consen   43 NPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIK  122 (311)
T ss_dssp             TT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTS
T ss_pred             hccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccccccccccc
Confidence            3344678999999999985444           245899999998                 1234667776443332  


Q ss_pred             CCceeeEeecccc
Q psy10644        165 PYSVDVAVFCLSL  177 (196)
Q Consensus       165 ~~sfD~Vi~~~~l  177 (196)
                      ...||+|++.--+
T Consensus       123 ~~~~D~ii~NPPf  135 (311)
T PF02384_consen  123 NQKFDVIIGNPPF  135 (311)
T ss_dssp             T--EEEEEEE--C
T ss_pred             ccccccccCCCCc
Confidence            4789999986543

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=96.34  E-value=0.0035  Score=49.15  Aligned_cols=77  Identities=16%  Similarity=0.046  Sum_probs=48.9

Q ss_pred             CCEEEEEcCCCchhHhhc--cC-CeEEEEeCCC----------------CCceEEEecCCC-CC---CCCCceeeEeecc
Q psy10644        119 RLVIADLGCGEAKLAAEL--TQ-HKVHSLDLVA----------------LNERVTSCDMTR-TP---LKPYSVDVAVFCL  175 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l--~~-~~v~giDls~----------------~~~~~~~~d~~~-lp---~~~~sfD~Vi~~~  175 (196)
                      +.++||+=||+|.++...  .| .+|+.+|.++                ..+.++..|... ++   .....||+|++--
T Consensus        43 g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDP  122 (183)
T PF03602_consen   43 GARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDP  122 (183)
T ss_dssp             T-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE--
T ss_pred             CCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECC
Confidence            789999999999998766  34 4999999998                235677777532 22   2468999998765


Q ss_pred             cccccC-HHHHHHHHH--HhccC
Q psy10644        176 SLMGTD-LAACIKEAN--RILKL  195 (196)
Q Consensus       176 ~lh~~d-~~~~l~e~~--rvLkp  195 (196)
                      -..... ...++..+.  .+|++
T Consensus       123 PY~~~~~~~~~l~~l~~~~~l~~  145 (183)
T PF03602_consen  123 PYAKGLYYEELLELLAENNLLNE  145 (183)
T ss_dssp             STTSCHHHHHHHHHHHHTTSEEE
T ss_pred             CcccchHHHHHHHHHHHCCCCCC
Confidence            554333 366666665  45554

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=96.23  E-value=0.0086  Score=53.08  Aligned_cols=57  Identities=26%  Similarity=0.355  Sum_probs=45.9

Q ss_pred             CCCCEEEEEcCCCchhHhhcc--CCeEEEEeCCC---------------CCceEEEecCCCCCCC---CCceeeEee
Q psy10644        117 KGRLVIADLGCGEAKLAAELT--QHKVHSLDLVA---------------LNERVTSCDMTRTPLK---PYSVDVAVF  173 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l~--~~~v~giDls~---------------~~~~~~~~d~~~lp~~---~~sfD~Vi~  173 (196)
                      .++.++||+=||.|.|+..|.  ..+|+|+|+++               .|+.|+.++.+.+...   ...+|.|+.
T Consensus       292 ~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~Vvv  368 (432)
T COG2265         292 AGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVV  368 (432)
T ss_pred             cCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEE
Confidence            346799999999999999994  45999999998               4788999998775433   347888874

>KOG1663|consensus

Probab=96.11  E-value=0.029  Score=45.39  Aligned_cols=75  Identities=13%  Similarity=0.104  Sum_probs=54.7

Q ss_pred             CCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC----------------CCceEEEecCCC-CC-----CCCCceeeE
Q psy10644        119 RLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA----------------LNERVTSCDMTR-TP-----LKPYSVDVA  171 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~----------------~~~~~~~~d~~~-lp-----~~~~sfD~V  171 (196)
                      ..++||||.=||.-+..+     .+.+|+++|+++                ..+.+++++..+ ++     .+.++||+|
T Consensus        74 ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDfa  153 (237)
T KOG1663|consen   74 AKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDFA  153 (237)
T ss_pred             CceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeEE
Confidence            468999998888554433     567999999998                467788877532 21     356899997


Q ss_pred             eeccccccc-CHHHHHHHHHHhccCC
Q psy10644        172 VFCLSLMGT-DLAACIKEANRILKLG  196 (196)
Q Consensus       172 i~~~~lh~~-d~~~~l~e~~rvLkpg  196 (196)
                      +.-   |+. +....+.++.++||+|
T Consensus       154 FvD---adK~nY~~y~e~~l~Llr~G  176 (237)
T KOG1663|consen  154 FVD---ADKDNYSNYYERLLRLLRVG  176 (237)
T ss_pred             EEc---cchHHHHHHHHHHHhhcccc
Confidence            643   334 5568899999999987

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=96.03  E-value=0.016  Score=50.61  Aligned_cols=78  Identities=17%  Similarity=0.096  Sum_probs=58.7

Q ss_pred             CCEEEEEcCCCchhHhhc--cCC-eEEEEeCCC-----------------CCceEEEecCCCC-C---CCCCceeeEeec
Q psy10644        119 RLVIADLGCGEAKLAAEL--TQH-KVHSLDLVA-----------------LNERVTSCDMTRT-P---LKPYSVDVAVFC  174 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l--~~~-~v~giDls~-----------------~~~~~~~~d~~~l-p---~~~~sfD~Vi~~  174 (196)
                      +.+|||+=|=||.++...  .|+ +|+++|+|.                 ..+.++++|+-.+ .   -....||+|++-
T Consensus       218 GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilD  297 (393)
T COG1092         218 GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIILD  297 (393)
T ss_pred             CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEEC
Confidence            789999999999998777  466 999999998                 2457888887442 2   234589999863


Q ss_pred             c--------ccc-cc-CHHHHHHHHHHhccCC
Q psy10644        175 L--------SLM-GT-DLAACIKEANRILKLG  196 (196)
Q Consensus       175 ~--------~lh-~~-d~~~~l~e~~rvLkpg  196 (196)
                      -        ... .. ++...+..+.++|+||
T Consensus       298 PPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pg  329 (393)
T COG1092         298 PPSFARSKKQEFSAQRDYKDLNDLALRLLAPG  329 (393)
T ss_pred             CcccccCcccchhHHHHHHHHHHHHHHHcCCC
Confidence            2        111 12 7788899999999986

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=95.98  E-value=0.034  Score=52.27  Aligned_cols=55  Identities=16%  Similarity=0.064  Sum_probs=36.4

Q ss_pred             eEEEEeCCC----------------CCceEEEecCCCCCCC--CCceeeEeecccc---ccc--CHHHHHHHHHHhcc
Q psy10644        140 KVHSLDLVA----------------LNERVTSCDMTRTPLK--PYSVDVAVFCLSL---MGT--DLAACIKEANRILK  194 (196)
Q Consensus       140 ~v~giDls~----------------~~~~~~~~d~~~lp~~--~~sfD~Vi~~~~l---h~~--d~~~~l~e~~rvLk  194 (196)
                      +|+|+|+++                ..+.+..+|+.+++.+  .++||+|+++--.   ...  +...+..++.+.||
T Consensus       258 ~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk  335 (702)
T PRK11783        258 KFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLK  335 (702)
T ss_pred             eEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHH
Confidence            699999998                2367889999877654  3579999998554   121  34445444444444

>KOG2730|consensus

Probab=95.94  E-value=0.0076  Score=48.55  Aligned_cols=58  Identities=16%  Similarity=0.118  Sum_probs=41.4

Q ss_pred             CCEEEEEcCCCchhHhhc--cCCeEEEEeCCC----------------CCceEEEecCCC----CCCCCCceeeEeeccc
Q psy10644        119 RLVIADLGCGEAKLAAEL--TQHKVHSLDLVA----------------LNERVTSCDMTR----TPLKPYSVDVAVFCLS  176 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l--~~~~v~giDls~----------------~~~~~~~~d~~~----lp~~~~sfD~Vi~~~~  176 (196)
                      ...|+|.-||.|..+..+  .+..|+++|++|                .++.|+++|+..    +.+....+|+|+.+--
T Consensus        95 ~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~spp  174 (263)
T KOG2730|consen   95 AEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLSPP  174 (263)
T ss_pred             cchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecCCC
Confidence            457888877777665544  678999999999                367899999743    3455556777775543

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=95.89  E-value=0.027  Score=46.21  Aligned_cols=75  Identities=20%  Similarity=0.235  Sum_probs=50.5

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC--------------CCceEEEecCCCCCCCC
Q psy10644        104 VDIIIKSIQERESKGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA--------------LNERVTSCDMTRTPLKP  165 (196)
Q Consensus       104 ~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~--------------~~~~~~~~d~~~lp~~~  165 (196)
                      ++.+.+.+...- ....+|+|||||.-=++...    .+..++|+|++.              .+..+...|+..-+ +.
T Consensus        92 Ld~fY~~if~~~-~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~-~~  169 (251)
T PF07091_consen   92 LDEFYDEIFGRI-PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDP-PK  169 (251)
T ss_dssp             HHHHHHHHCCCS----SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSH-TT
T ss_pred             HHHHHHHHHhcC-CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccC-CC
Confidence            666676665432 22679999999988776655    346999999998              46778888875543 46


Q ss_pred             CceeeEeeccccccc
Q psy10644        166 YSVDVAVFCLSLMGT  180 (196)
Q Consensus       166 ~sfD~Vi~~~~lh~~  180 (196)
                      ...|+++..-++|..
T Consensus       170 ~~~DlaLllK~lp~l  184 (251)
T PF07091_consen  170 EPADLALLLKTLPCL  184 (251)
T ss_dssp             SEESEEEEET-HHHH
T ss_pred             CCcchhhHHHHHHHH
Confidence            789999998888754

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=95.87  E-value=0.0072  Score=44.66  Aligned_cols=28  Identities=14%  Similarity=0.315  Sum_probs=24.0

Q ss_pred             EEEEEcCCCchhHhhc----cCCeEEEEeCCC
Q psy10644        121 VIADLGCGEAKLAAEL----TQHKVHSLDLVA  148 (196)
Q Consensus       121 ~ILDlGCG~G~~a~~l----~~~~v~giDls~  148 (196)
                      +|||+|||.|.++..+    .+.+|+++|.++
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~   32 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLP   32 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCH
Confidence            4899999999998777    344899999998

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=95.80  E-value=0.023  Score=45.04  Aligned_cols=79  Identities=18%  Similarity=0.111  Sum_probs=53.8

Q ss_pred             CCCCEEEEEcCCCchhHhhcc-----CCeEEEEeCCC---------------------CCceEEEecCCCCCCCCCceee
Q psy10644        117 KGRLVIADLGCGEAKLAAELT-----QHKVHSLDLVA---------------------LNERVTSCDMTRTPLKPYSVDV  170 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l~-----~~~v~giDls~---------------------~~~~~~~~d~~~lp~~~~sfD~  170 (196)
                      +++.+|+|+=.|.|.|++.|.     ...|+++=..+                     .|+..+-.+.-.++ +.+..|+
T Consensus        47 kpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~-~pq~~d~  125 (238)
T COG4798          47 KPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG-APQKLDL  125 (238)
T ss_pred             CCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC-CCCcccc
Confidence            458999999999999999992     33788874333                     24444444444444 4556677


Q ss_pred             Eeecccc--------cccCHHHHHHHHHHhccCC
Q psy10644        171 AVFCLSL--------MGTDLAACIKEANRILKLG  196 (196)
Q Consensus       171 Vi~~~~l--------h~~d~~~~l~e~~rvLkpg  196 (196)
                      ++-....        |.-...++.+++++.||||
T Consensus       126 ~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPG  159 (238)
T COG4798         126 VPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPG  159 (238)
T ss_pred             cccchhhhhhhccccCcchHHHHHHHHHHhcCCC
Confidence            6654433        2225778999999999998

>KOG2915|consensus

Probab=95.79  E-value=0.066  Score=44.54  Aligned_cols=68  Identities=18%  Similarity=0.298  Sum_probs=51.5

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC----------------CCceEEEecCCCCC
Q psy10644        104 VDIIIKSIQERESKGRLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA----------------LNERVTSCDMTRTP  162 (196)
Q Consensus       104 ~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~----------------~~~~~~~~d~~~lp  162 (196)
                      ...|+..|   ...++.+||+-|.|+|.++..+     +..+++.+|...                .++.++.-|+....
T Consensus        94 ia~I~~~L---~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~G  170 (314)
T KOG2915|consen   94 IAMILSML---EIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSG  170 (314)
T ss_pred             HHHHHHHh---cCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCC
Confidence            45555555   3445899999999999997777     446999999987                47889999987654


Q ss_pred             C--CCCceeeEeec
Q psy10644        163 L--KPYSVDVAVFC  174 (196)
Q Consensus       163 ~--~~~sfD~Vi~~  174 (196)
                      |  .+..+|.|+.-
T Consensus       171 F~~ks~~aDaVFLD  184 (314)
T KOG2915|consen  171 FLIKSLKADAVFLD  184 (314)
T ss_pred             ccccccccceEEEc
Confidence            4  45778887753

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=95.79  E-value=0.079  Score=44.49  Aligned_cols=79  Identities=15%  Similarity=0.167  Sum_probs=55.5

Q ss_pred             CCCEEEEEcCCCchhHhhc----c--CCeEEEEeCCC---------------CCc-eEEEecCCCC-CCC--CCceeeEe
Q psy10644        118 GRLVIADLGCGEAKLAAEL----T--QHKVHSLDLVA---------------LNE-RVTSCDMTRT-PLK--PYSVDVAV  172 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l----~--~~~v~giDls~---------------~~~-~~~~~d~~~l-p~~--~~sfD~Vi  172 (196)
                      ...+||||.||.|......    +  ...|.-.|.++               .++ +|.++|+.+. .+.  .-..++++
T Consensus       135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~i  214 (311)
T PF12147_consen  135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAI  214 (311)
T ss_pred             CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEE
Confidence            4679999999999875544    2  24888899998               344 8888887542 111  22458888


Q ss_pred             ecccc-cccC---HHHHHHHHHHhccCC
Q psy10644        173 FCLSL-MGTD---LAACIKEANRILKLG  196 (196)
Q Consensus       173 ~~~~l-h~~d---~~~~l~e~~rvLkpg  196 (196)
                      .+..+ .+.|   ....|.-+.++|.||
T Consensus       215 VsGL~ElF~Dn~lv~~sl~gl~~al~pg  242 (311)
T PF12147_consen  215 VSGLYELFPDNDLVRRSLAGLARALEPG  242 (311)
T ss_pred             EecchhhCCcHHHHHHHHHHHHHHhCCC
Confidence            88777 3443   455788899998886

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=95.70  E-value=0.076  Score=43.26  Aligned_cols=76  Identities=18%  Similarity=0.231  Sum_probs=48.7

Q ss_pred             CCCEEEEEcCCCchhHhhc--c-CCeEEEEeCCCC--------Cce---EEEecCCCCC---CCCCceeeEeeccccccc
Q psy10644        118 GRLVIADLGCGEAKLAAEL--T-QHKVHSLDLVAL--------NER---VTSCDMTRTP---LKPYSVDVAVFCLSLMGT  180 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l--~-~~~v~giDls~~--------~~~---~~~~d~~~lp---~~~~sfD~Vi~~~~lh~~  180 (196)
                      ++..+||+|.-||.|+..+  . ..+|+++|....        +.+   +...|+..+.   +. +..|+|++-.++-  
T Consensus        79 k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~-~~~d~~v~DvSFI--  155 (245)
T COG1189          79 KGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFT-EKPDLIVIDVSFI--  155 (245)
T ss_pred             CCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcc-cCCCeEEEEeehh--
Confidence            4789999999999999988  3 349999998771        222   2333444332   22 2567877766542  


Q ss_pred             CHHHHHHHHHHhccCC
Q psy10644        181 DLAACIKEANRILKLG  196 (196)
Q Consensus       181 d~~~~l~e~~rvLkpg  196 (196)
                      .....|..+..+|+|+
T Consensus       156 SL~~iLp~l~~l~~~~  171 (245)
T COG1189         156 SLKLILPALLLLLKDG  171 (245)
T ss_pred             hHHHHHHHHHHhcCCC
Confidence            3355566666666553

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=95.69  E-value=0.02  Score=45.41  Aligned_cols=58  Identities=19%  Similarity=0.209  Sum_probs=41.5

Q ss_pred             CCCEEEEEcCCCchhHhhc--cC-CeEEEEeCCC--------------CCceEEEecCCCCCCCCCceeeEeeccccc
Q psy10644        118 GRLVIADLGCGEAKLAAEL--TQ-HKVHSLDLVA--------------LNERVTSCDMTRTPLKPYSVDVAVFCLSLM  178 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l--~~-~~v~giDls~--------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh  178 (196)
                      .+.+|||+|.|.|..+...  .+ ..|++.|+.|              .++.++..|+-.   .+..||+|+...++.
T Consensus        79 rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g---~~~~~Dl~LagDlfy  153 (218)
T COG3897          79 RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG---SPPAFDLLLAGDLFY  153 (218)
T ss_pred             ccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC---CCcceeEEEeeceec
Confidence            4789999999999875554  33 3788888887              133444444322   677899999999884

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=95.51  E-value=0.022  Score=45.47  Aligned_cols=53  Identities=28%  Similarity=0.271  Sum_probs=35.7

Q ss_pred             EEEEcCCCchhHhhc--cCC--eEEEEeCCC----------------CCceEEEecCCCCCCCCCc-eeeEeecc
Q psy10644        122 IADLGCGEAKLAAEL--TQH--KVHSLDLVA----------------LNERVTSCDMTRTPLKPYS-VDVAVFCL  175 (196)
Q Consensus       122 ILDlGCG~G~~a~~l--~~~--~v~giDls~----------------~~~~~~~~d~~~lp~~~~s-fD~Vi~~~  175 (196)
                      |+||||-.|.+...|  .+.  +++++|+++                ..+.+..+|... +++++. +|+|+.+.
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~-~l~~~e~~d~ivIAG   74 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLE-VLKPGEDVDTIVIAG   74 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGG-G--GGG---EEEEEE
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCccc-ccCCCCCCCEEEEec
Confidence            689999999999999  333  899999998                357888888543 233443 78877654

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=95.50  E-value=0.021  Score=51.70  Aligned_cols=30  Identities=27%  Similarity=0.429  Sum_probs=24.1

Q ss_pred             CCEEEEEcCCCchhHhhc----c--------CCeEEEEeCCC
Q psy10644        119 RLVIADLGCGEAKLAAEL----T--------QHKVHSLDLVA  148 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l----~--------~~~v~giDls~  148 (196)
                      ..+|||.|||+|.+...+    .        ...++|+|+++
T Consensus        32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~   73 (524)
T TIGR02987        32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDK   73 (524)
T ss_pred             ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhH
Confidence            568999999999996655    1        14789999988

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>KOG0822|consensus

Probab=95.44  E-value=0.067  Score=48.25  Aligned_cols=78  Identities=23%  Similarity=0.250  Sum_probs=58.5

Q ss_pred             CCEEEEEcCCCchhHhhc--------cCCeEEEEeCCC---------------CCceEEEecCCCCCCCCCceeeEeecc
Q psy10644        119 RLVIADLGCGEAKLAAEL--------TQHKVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDVAVFCL  175 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l--------~~~~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~  175 (196)
                      ..+|+=+|+|-|-+....        ...++++++-+|               ..+.++.+||..++-|....|++|+-+
T Consensus       368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSEL  447 (649)
T KOG0822|consen  368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVSEL  447 (649)
T ss_pred             eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHHHh
Confidence            346788999999775444        233788888887               468899999999986668899988754


Q ss_pred             cc-ccc--CHHHHHHHHHHhccCC
Q psy10644        176 SL-MGT--DLAACIKEANRILKLG  196 (196)
Q Consensus       176 ~l-h~~--d~~~~l~e~~rvLkpg  196 (196)
                      .= .+.  =-+++|.-+-+.|||+
T Consensus       448 LGSFGDNELSPECLDG~q~fLkpd  471 (649)
T KOG0822|consen  448 LGSFGDNELSPECLDGAQKFLKPD  471 (649)
T ss_pred             hccccCccCCHHHHHHHHhhcCCC
Confidence            32 333  2578999999999984

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=95.36  E-value=0.062  Score=43.41  Aligned_cols=85  Identities=15%  Similarity=0.090  Sum_probs=53.1

Q ss_pred             HHhhcCCCCCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC-------------CCceEEEecCCCC---CCCCCcee
Q psy10644        111 IQERESKGRLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA-------------LNERVTSCDMTRT---PLKPYSVD  169 (196)
Q Consensus       111 l~~~~~~~~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~-------------~~~~~~~~d~~~l---p~~~~sfD  169 (196)
                      +...+.+++.+||-+|..+|.....+     ....|++++.|+             .|+--+.+|+..-   ..--+.+|
T Consensus        66 l~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VD  145 (229)
T PF01269_consen   66 LENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVD  145 (229)
T ss_dssp             -S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EE
T ss_pred             ccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhccccccc
Confidence            33445567899999999999887776     356999999999             6888888888531   11124788


Q ss_pred             eEeecccccccCHHHHHHHHHHhccCC
Q psy10644        170 VAVFCLSLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       170 ~Vi~~~~lh~~d~~~~l~e~~rvLkpg  196 (196)
                      +|++--+ +-.+..-++..+...||+|
T Consensus       146 vI~~DVa-Qp~Qa~I~~~Na~~fLk~g  171 (229)
T PF01269_consen  146 VIFQDVA-QPDQARIAALNARHFLKPG  171 (229)
T ss_dssp             EEEEE-S-STTHHHHHHHHHHHHEEEE
T ss_pred             EEEecCC-ChHHHHHHHHHHHhhccCC
Confidence            8665433 3334455666777777764

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=95.33  E-value=0.037  Score=47.49  Aligned_cols=75  Identities=15%  Similarity=0.077  Sum_probs=54.8

Q ss_pred             CCCEEEEEcCCCchhHhhc--cCC-eEEEEeCCC----------------CCceEEEecCCCCCCCCCceeeEeeccccc
Q psy10644        118 GRLVIADLGCGEAKLAAEL--TQH-KVHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAVFCLSLM  178 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l--~~~-~v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh  178 (196)
                      ++.+|||+=||-|-++..+  .+. .|+++|++|                ..+..+.+|...++...+.+|-|++.+.- 
T Consensus       188 ~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p~-  266 (341)
T COG2520         188 EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLPK-  266 (341)
T ss_pred             CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCCC-
Confidence            4889999999999998888  333 499999999                23678899998877655889999887653 


Q ss_pred             ccCHHHHHHHHHHhccC
Q psy10644        179 GTDLAACIKEANRILKL  195 (196)
Q Consensus       179 ~~d~~~~l~e~~rvLkp  195 (196)
                        +-.+++..+.+.||+
T Consensus       267 --~a~~fl~~A~~~~k~  281 (341)
T COG2520         267 --SAHEFLPLALELLKD  281 (341)
T ss_pred             --cchhhHHHHHHHhhc
Confidence              223344444444443

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=94.89  E-value=0.34  Score=40.29  Aligned_cols=78  Identities=19%  Similarity=0.186  Sum_probs=46.2

Q ss_pred             CCEEEEEcCCCc------hhHhhc-cCCeEEEEeCCC-------------CC--ceEEEecCCCCC--CC----CCcee-
Q psy10644        119 RLVIADLGCGEA------KLAAEL-TQHKVHSLDLVA-------------LN--ERVTSCDMTRTP--LK----PYSVD-  169 (196)
Q Consensus       119 ~~~ILDlGCG~G------~~a~~l-~~~~v~giDls~-------------~~--~~~~~~d~~~lp--~~----~~sfD-  169 (196)
                      -...||||||--      .+++.. +.++|+-+|+.|             .+  ..++.+|+.+..  +.    .+-+| 
T Consensus        69 IrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~  148 (267)
T PF04672_consen   69 IRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLDF  148 (267)
T ss_dssp             --EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--T
T ss_pred             cceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCC
Confidence            357899999944      234444 678999999999             34  678999986421  11    12333 


Q ss_pred             ----eEeeccccccc----CHHHHHHHHHHhccCC
Q psy10644        170 ----VAVFCLSLMGT----DLAACIKEANRILKLG  196 (196)
Q Consensus       170 ----~Vi~~~~lh~~----d~~~~l~e~~rvLkpg  196 (196)
                          .|+++.+||+.    ++..+++.++..|-||
T Consensus       149 ~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapG  183 (267)
T PF04672_consen  149 DRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPG  183 (267)
T ss_dssp             TS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT
T ss_pred             CCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCC
Confidence                36677777754    6889999999999887

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=94.84  E-value=0.034  Score=48.40  Aligned_cols=75  Identities=17%  Similarity=0.076  Sum_probs=51.8

Q ss_pred             CCEEEEEcCCCchhHhhc-c---C-CeEEEEeCCC---------------CCceEEEecCCCC-CCCCCceeeEeecccc
Q psy10644        119 RLVIADLGCGEAKLAAEL-T---Q-HKVHSLDLVA---------------LNERVTSCDMTRT-PLKPYSVDVAVFCLSL  177 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l-~---~-~~v~giDls~---------------~~~~~~~~d~~~l-p~~~~sfD~Vi~~~~l  177 (196)
                      +.+|||+-||+|..+..+ .   + .+|+++|+++               .++.++..|+..+ ......||+|..-- +
T Consensus        45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f  123 (374)
T TIGR00308        45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F  123 (374)
T ss_pred             CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C
Confidence            358999999999998887 2   2 4899999999               2356777776543 21235799887643 3


Q ss_pred             cccCHHHHHHHHHHhccCC
Q psy10644        178 MGTDLAACIKEANRILKLG  196 (196)
Q Consensus       178 h~~d~~~~l~e~~rvLkpg  196 (196)
                       + .+..++..+.+.+++|
T Consensus       124 -G-s~~~fld~al~~~~~~  140 (374)
T TIGR00308       124 -G-TPAPFVDSAIQASAER  140 (374)
T ss_pred             -C-CcHHHHHHHHHhcccC
Confidence             1 3356777777777653

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=94.84  E-value=0.11  Score=44.49  Aligned_cols=65  Identities=22%  Similarity=0.151  Sum_probs=36.4

Q ss_pred             CCCCCEEEEEcCCCchhHhhc-------------c-C------CeEEEEeCCC--------------------CCceE--
Q psy10644        116 SKGRLVIADLGCGEAKLAAEL-------------T-Q------HKVHSLDLVA--------------------LNERV--  153 (196)
Q Consensus       116 ~~~~~~ILDlGCG~G~~a~~l-------------~-~------~~v~giDls~--------------------~~~~~--  153 (196)
                      ..+..+|+|+||..|..+..+             . +      ..|+--|+-.                    .++.+  
T Consensus        14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~g   93 (334)
T PF03492_consen   14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSG   93 (334)
T ss_dssp             TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEE
T ss_pred             CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEe
Confidence            344679999999999876555             0 1      2666668765                    12211  


Q ss_pred             EEecCCCCCCCCCceeeEeeccccccc
Q psy10644        154 TSCDMTRTPLKPYSVDVAVFCLSLMGT  180 (196)
Q Consensus       154 ~~~d~~~lp~~~~sfD~Vi~~~~lh~~  180 (196)
                      +-+..-+--+|+++.|+++++.+|||.
T Consensus        94 vpgSFy~rLfP~~Svh~~~Ss~alHWL  120 (334)
T PF03492_consen   94 VPGSFYGRLFPSNSVHFGHSSYALHWL  120 (334)
T ss_dssp             EES-TTS--S-TT-EEEEEEES-TTB-
T ss_pred             cCchhhhccCCCCceEEEEEechhhhc
Confidence            223333434889999999999999976

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

>KOG2187|consensus

Probab=94.64  E-value=0.045  Score=49.08  Aligned_cols=43  Identities=14%  Similarity=0.291  Sum_probs=35.4

Q ss_pred             CCCEEEEEcCCCchhHhhcc--CCeEEEEeCCC---------------CCceEEEecCCC
Q psy10644        118 GRLVIADLGCGEAKLAAELT--QHKVHSLDLVA---------------LNERVTSCDMTR  160 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l~--~~~v~giDls~---------------~~~~~~~~d~~~  160 (196)
                      .+..+||+-||||.++..+.  -.+|+|+++++               .|+.|+++..++
T Consensus       383 ~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~  442 (534)
T KOG2187|consen  383 ADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAED  442 (534)
T ss_pred             CCcEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchhcCccceeeeecchhh
Confidence            36789999999999999993  34999999998               478899885544

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=94.54  E-value=0.04  Score=46.27  Aligned_cols=78  Identities=17%  Similarity=0.129  Sum_probs=52.3

Q ss_pred             CCEEEEEcCCCchhHhhc--cCC-eEEEEeCCC-----------------CCceEEEecCCC-CC--CCCCceeeEeecc
Q psy10644        119 RLVIADLGCGEAKLAAEL--TQH-KVHSLDLVA-----------------LNERVTSCDMTR-TP--LKPYSVDVAVFCL  175 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l--~~~-~v~giDls~-----------------~~~~~~~~d~~~-lp--~~~~sfD~Vi~~~  175 (196)
                      +.+|||+=|=||.++...  .|+ +|+++|.|.                 ..+.+++.|+.. +.  -..+.||+||+--
T Consensus       124 gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDP  203 (286)
T PF10672_consen  124 GKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILDP  203 (286)
T ss_dssp             TCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE--
T ss_pred             CCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEECC
Confidence            779999999999998765  343 899999998                 356788888743 21  1246899998732


Q ss_pred             c-c----c-cc-CHHHHHHHHHHhccCC
Q psy10644        176 S-L----M-GT-DLAACIKEANRILKLG  196 (196)
Q Consensus       176 ~-l----h-~~-d~~~~l~e~~rvLkpg  196 (196)
                      - +    . .. ++..++..+.++|+||
T Consensus       204 PsF~k~~~~~~~~y~~L~~~a~~ll~~g  231 (286)
T PF10672_consen  204 PSFAKSKFDLERDYKKLLRRAMKLLKPG  231 (286)
T ss_dssp             SSEESSTCEHHHHHHHHHHHHHHTEEEE
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            1 1    1 12 6777888888888875

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>KOG3201|consensus

Probab=94.23  E-value=0.015  Score=44.82  Aligned_cols=78  Identities=19%  Similarity=0.191  Sum_probs=50.7

Q ss_pred             CCEEEEEcCCCchhHhhc-----cCCeEEEEeCCCC-----------C--ceEEEe-----cCC--CCCCCCCceeeEee
Q psy10644        119 RLVIADLGCGEAKLAAEL-----TQHKVHSLDLVAL-----------N--ERVTSC-----DMT--RTPLKPYSVDVAVF  173 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~~-----------~--~~~~~~-----d~~--~lp~~~~sfD~Vi~  173 (196)
                      +..||++|.|--.++-.|     ....|.-.|-++.           |  .....|     +..  ........||+|++
T Consensus        30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIla  109 (201)
T KOG3201|consen   30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILA  109 (201)
T ss_pred             HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEe
Confidence            467999999965555444     4457888887761           1  111111     111  11223458999999


Q ss_pred             ccccccc-CHHHHHHHHHHhccCC
Q psy10644        174 CLSLMGT-DLAACIKEANRILKLG  196 (196)
Q Consensus       174 ~~~lh~~-d~~~~l~e~~rvLkpg  196 (196)
                      ..++.+. .....++.|.+.|+|.
T Consensus       110 ADClFfdE~h~sLvdtIk~lL~p~  133 (201)
T KOG3201|consen  110 ADCLFFDEHHESLVDTIKSLLRPS  133 (201)
T ss_pred             ccchhHHHHHHHHHHHHHHHhCcc
Confidence            9999655 6677888999999983

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=93.96  E-value=0.34  Score=40.96  Aligned_cols=62  Identities=10%  Similarity=0.036  Sum_probs=31.6

Q ss_pred             CCEEEEEcCCCchhHhhc----cCCeEEEEeCCC-----------------CCceEEEecC-----CCCCCCCCceeeEe
Q psy10644        119 RLVIADLGCGEAKLAAEL----TQHKVHSLDLVA-----------------LNERVTSCDM-----TRTPLKPYSVDVAV  172 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l----~~~~v~giDls~-----------------~~~~~~~~d~-----~~lp~~~~sfD~Vi  172 (196)
                      ..++||||||...+-..|    .+++++|.|+++                 ..|.++...-     ..+..+.+.||+++
T Consensus       103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftm  182 (299)
T PF05971_consen  103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTM  182 (299)
T ss_dssp             --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEE
T ss_pred             ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEe
Confidence            468999999998664444    588999999998                 2355554421     11223456899999


Q ss_pred             eccccccc
Q psy10644        173 FCLSLMGT  180 (196)
Q Consensus       173 ~~~~lh~~  180 (196)
                      |.--+|..
T Consensus       183 CNPPFy~s  190 (299)
T PF05971_consen  183 CNPPFYSS  190 (299)
T ss_dssp             E-----SS
T ss_pred             cCCccccC
Confidence            98777643

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=93.54  E-value=0.12  Score=45.08  Aligned_cols=18  Identities=28%  Similarity=0.155  Sum_probs=16.8

Q ss_pred             CCCCceeeEeeccccccc
Q psy10644        163 LKPYSVDVAVFCLSLMGT  180 (196)
Q Consensus       163 ~~~~sfD~Vi~~~~lh~~  180 (196)
                      ||.++.++++++.+|||.
T Consensus       158 fP~~Slh~~~Ss~slHWL  175 (386)
T PLN02668        158 FPARSIDVFHSAFSLHWL  175 (386)
T ss_pred             cCCCceEEEEeeccceec
Confidence            789999999999999986

>KOG2920|consensus

Probab=93.42  E-value=0.17  Score=42.16  Aligned_cols=31  Identities=29%  Similarity=0.327  Sum_probs=23.9

Q ss_pred             CCCEEEEEcCCCchhHhhc--cC-CeEEEEeCCC
Q psy10644        118 GRLVIADLGCGEAKLAAEL--TQ-HKVHSLDLVA  148 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l--~~-~~v~giDls~  148 (196)
                      .+.+|||+|||.|.-....  .+ ..|+..|.+.
T Consensus       116 ~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na  149 (282)
T KOG2920|consen  116 SGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNA  149 (282)
T ss_pred             cCceeEecCCcccccchhhhhhccceeeeEecch
Confidence            4789999999999776655  33 5777778777

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=93.14  E-value=0.024  Score=39.76  Aligned_cols=73  Identities=15%  Similarity=0.015  Sum_probs=30.5

Q ss_pred             EEEcCCCchhHhhcc-----C--CeEEEEeCCC---------------CCceEEEecCCCC--CCCCCceeeEeeccccc
Q psy10644        123 ADLGCGEAKLAAELT-----Q--HKVHSLDLVA---------------LNERVTSCDMTRT--PLKPYSVDVAVFCLSLM  178 (196)
Q Consensus       123 LDlGCG~G~~a~~l~-----~--~~v~giDls~---------------~~~~~~~~d~~~l--p~~~~sfD~Vi~~~~lh  178 (196)
                      ||||+..|..+..+.     .  .+++++|..+               .++.++.++....  .++.+++|+|+.-. -|
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg-~H   79 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG-DH   79 (106)
T ss_dssp             --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred             CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-CC
Confidence            689999998877661     1  2799999887               2456666665332  12356888866543 34


Q ss_pred             -ccCHHHHHHHHHHhccCC
Q psy10644        179 -GTDLAACIKEANRILKLG  196 (196)
Q Consensus       179 -~~d~~~~l~e~~rvLkpg  196 (196)
                       .......+..+.+.|+||
T Consensus        80 ~~~~~~~dl~~~~~~l~~g   98 (106)
T PF13578_consen   80 SYEAVLRDLENALPRLAPG   98 (106)
T ss_dssp             -HHHHHHHHHHHGGGEEEE
T ss_pred             CHHHHHHHHHHHHHHcCCC
Confidence             335566777777777775

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=93.10  E-value=0.52  Score=40.74  Aligned_cols=82  Identities=20%  Similarity=0.152  Sum_probs=53.8

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc----c--CCeEEEEeCCC---------------CCceEEEecCCCCC---CCCCceee
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL----T--QHKVHSLDLVA---------------LNERVTSCDMTRTP---LKPYSVDV  170 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l----~--~~~v~giDls~---------------~~~~~~~~d~~~lp---~~~~sfD~  170 (196)
                      .+.++.+|||+.++.|.=+-.+    .  +..|+++|.++               .++.++..|...++   ...+.||.
T Consensus       153 ~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~  232 (355)
T COG0144         153 DPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDR  232 (355)
T ss_pred             CCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcE
Confidence            4566899999999988543333    3  35679999999               35567777765443   22235999


Q ss_pred             Eeec---c---ccc-ccC----------------HHHHHHHHHHhccCC
Q psy10644        171 AVFC---L---SLM-GTD----------------LAACIKEANRILKLG  196 (196)
Q Consensus       171 Vi~~---~---~lh-~~d----------------~~~~l~e~~rvLkpg  196 (196)
                      |+.-   .   +++ .++                ..++|..+.++||||
T Consensus       233 iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~G  281 (355)
T COG0144         233 ILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPG  281 (355)
T ss_pred             EEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            9852   1   221 111                345788899999987

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=93.02  E-value=0.21  Score=40.26  Aligned_cols=56  Identities=25%  Similarity=0.174  Sum_probs=39.6

Q ss_pred             CCEEEEEcCCCchhHhhc----cCCeEEEEeCCC----------------CCceEEEecCCCCCCC-CCceeeEeecc
Q psy10644        119 RLVIADLGCGEAKLAAEL----TQHKVHSLDLVA----------------LNERVTSCDMTRTPLK-PYSVDVAVFCL  175 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l----~~~~v~giDls~----------------~~~~~~~~d~~~lp~~-~~sfD~Vi~~~  175 (196)
                      +..++||||-.|.+..+|    ....+++.|+++                ..+.+..+|... ++. ++.+|+|+.+.
T Consensus        17 ~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~-~l~~~d~~d~ivIAG   93 (226)
T COG2384          17 GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLA-VLELEDEIDVIVIAG   93 (226)
T ss_pred             CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCcc-ccCccCCcCEEEEeC
Confidence            445999999999999999    234899999998                244555555532 333 44789887654

>KOG1099|consensus

Probab=92.94  E-value=0.16  Score=41.35  Aligned_cols=77  Identities=23%  Similarity=0.223  Sum_probs=55.3

Q ss_pred             CEEEEEcCCCchhHhhc-----c--C---C---eEEEEeCCC----CCceEEEecCCCCC--------CCCCceeeEeec
Q psy10644        120 LVIADLGCGEAKLAAEL-----T--Q---H---KVHSLDLVA----LNERVTSCDMTRTP--------LKPYSVDVAVFC  174 (196)
Q Consensus       120 ~~ILDlGCG~G~~a~~l-----~--~---~---~v~giDls~----~~~~~~~~d~~~lp--------~~~~sfD~Vi~~  174 (196)
                      .+++|+-+-.|.|++.|     .  .   .   .|+++|+-+    +.+.-+++|+....        |..+..|+|+|-
T Consensus        43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaPI~GV~qlq~DIT~~stae~Ii~hfggekAdlVvcD  122 (294)
T KOG1099|consen   43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAPIEGVIQLQGDITSASTAEAIIEHFGGEKADLVVCD  122 (294)
T ss_pred             hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCccCceEEeecccCCHhHHHHHHHHhCCCCccEEEeC
Confidence            47899999999998877     1  1   1   499999988    56777888886532        456789999986


Q ss_pred             cc-----ccccC-------HHHHHHHHHHhccCC
Q psy10644        175 LS-----LMGTD-------LAACIKEANRILKLG  196 (196)
Q Consensus       175 ~~-----lh~~d-------~~~~l~e~~rvLkpg  196 (196)
                      .+     +|..|       ...+|.-...+||||
T Consensus       123 GAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~G  156 (294)
T KOG1099|consen  123 GAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPG  156 (294)
T ss_pred             CCCCccccccHHHHHHHHHHHHHHHHHhheecCC
Confidence            54     45432       234566677888887

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=92.93  E-value=0.25  Score=41.87  Aligned_cols=71  Identities=11%  Similarity=0.071  Sum_probs=50.9

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC--------------CCceEEEecCCCCC---
Q psy10644        104 VDIIIKSIQERESKGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA--------------LNERVTSCDMTRTP---  162 (196)
Q Consensus       104 ~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~--------------~~~~~~~~d~~~lp---  162 (196)
                      .+.+++.|   .+.++..++|.=||.|..+..+    .+.+|+|+|.++              .++.++.++..++.   
T Consensus         9 l~Evl~~L---~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~l   85 (305)
T TIGR00006         9 LDEVVEGL---NIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEHL   85 (305)
T ss_pred             HHHHHHhc---CcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHHH
Confidence            34455555   3445779999999999988877    247999999998              25677777765432   


Q ss_pred             --CCCCceeeEeecccc
Q psy10644        163 --LKPYSVDVAVFCLSL  177 (196)
Q Consensus       163 --~~~~sfD~Vi~~~~l  177 (196)
                        ....++|.|++-+.+
T Consensus        86 ~~~~~~~vDgIl~DLGv  102 (305)
T TIGR00006        86 DELLVTKIDGILVDLGV  102 (305)
T ss_pred             HhcCCCcccEEEEeccC
Confidence              234679999987766

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>KOG4058|consensus

Probab=92.79  E-value=0.23  Score=37.84  Aligned_cols=64  Identities=19%  Similarity=0.267  Sum_probs=42.4

Q ss_pred             cCCCCCEEEEEcCCCchhHhhcc--C-CeEEEEeCCC----------------CCceEEEecCCCCCCCCCceeeEeecc
Q psy10644        115 ESKGRLVIADLGCGEAKLAAELT--Q-HKVHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAVFCL  175 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l~--~-~~v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~  175 (196)
                      ..++..+.+|+|.|.|.+.....  + ..-+|+++++                ....|..-|+-.+.+.+-.+-+|+-..
T Consensus        69 ~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy~~vviFgae  148 (199)
T KOG4058|consen   69 RGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDYRNVVIFGAE  148 (199)
T ss_pred             cCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccceEEEeehH
Confidence            33446799999999998855552  2 3678999998                345666777766666655554444444


Q ss_pred             ccc
Q psy10644        176 SLM  178 (196)
Q Consensus       176 ~lh  178 (196)
                      +++
T Consensus       149 s~m  151 (199)
T KOG4058|consen  149 SVM  151 (199)
T ss_pred             HHH
Confidence            443

>PTZ00357 methyltransferase; Provisional

Probab=92.54  E-value=0.53  Score=44.15  Aligned_cols=125  Identities=19%  Similarity=0.254  Sum_probs=74.4

Q ss_pred             hHHHHHHhhhCHHHHHHHHHHHHhhhhcCCCChH--------HHHH-H--HHHhhcC----CCCCEEEEEcCCCchhHhh
Q psy10644         71 SEESKDFFTEDRESFEAYHEGFKKQVTQWPINPV--------DIII-K--SIQERES----KGRLVIADLGCGEAKLAAE  135 (196)
Q Consensus        71 ~~~~~~~~~~~~~~f~~y~~~y~~~~~~w~~~~~--------~~~~-~--~l~~~~~----~~~~~ILDlGCG~G~~a~~  135 (196)
                      ...-.+-|.+++..|+.|+..-...+..|.....        ..+. .  .+...+.    .....|+=+|+|-|-+...
T Consensus       638 ES~TYEVFEKDpVKYdqYE~AI~kAL~Dw~~~~~~~~~~~~ns~~~~k~~~mdrvp~~~~d~~~vVImVVGAGRGPLVdr  717 (1072)
T PTZ00357        638 SSGVYEVFERDARKYRQYREAVFHYVRDWYAAGAEQQHAHQNSEFFAKHGVMQRVPVPSPDERTLHLVLLGCGRGPLIDE  717 (1072)
T ss_pred             chhhHHHHcCCcHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccCCCceEEEEEEcCCccHHHHH
Confidence            4445666778888888888777666655522100        0000 0  0111110    1124689999999977433


Q ss_pred             c--------cCCeEEEEeCCC----------------CC--------ceEEEecCCCCCCCC-----------CceeeEe
Q psy10644        136 L--------TQHKVHSLDLVA----------------LN--------ERVTSCDMTRTPLKP-----------YSVDVAV  172 (196)
Q Consensus       136 l--------~~~~v~giDls~----------------~~--------~~~~~~d~~~lp~~~-----------~sfD~Vi  172 (196)
                      .        ...+|++++=++                .+        ++++..|+..+..+.           +.+|+||
T Consensus       718 aLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~s~~~P~~~gKaDIVV  797 (1072)
T PTZ00357        718 CLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENGSLTLPADFGLCDLIV  797 (1072)
T ss_pred             HHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccccccccccccccceeh
Confidence            3        134899999875                12        688999998874332           3799988


Q ss_pred             ecccc-ccc--CHHHHHHHHHHhccC
Q psy10644        173 FCLSL-MGT--DLAACIKEANRILKL  195 (196)
Q Consensus       173 ~~~~l-h~~--d~~~~l~e~~rvLkp  195 (196)
                      +-+-= .+.  =-+++|.-+.+.||+
T Consensus       798 SELLGSFGDNELSPECLDGaQrfLKd  823 (1072)
T PTZ00357        798 SELLGSLGDNELSPECLEAFHAQLED  823 (1072)
T ss_pred             HhhhcccccccCCHHHHHHHHHhhhh
Confidence            74422 333  246788888888874

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=92.40  E-value=0.15  Score=41.58  Aligned_cols=58  Identities=21%  Similarity=0.103  Sum_probs=36.7

Q ss_pred             CEEEEEcCCCchhHhhc--cCCeEEEEeCCC------------------------CCceEEEecCCC-CCCCCCceeeEe
Q psy10644        120 LVIADLGCGEAKLAAEL--TQHKVHSLDLVA------------------------LNERVTSCDMTR-TPLKPYSVDVAV  172 (196)
Q Consensus       120 ~~ILDlGCG~G~~a~~l--~~~~v~giDls~------------------------~~~~~~~~d~~~-lp~~~~sfD~Vi  172 (196)
                      .+|||.=||-|.-+..+  .|++|++++-||                        .++.++.+|..+ ++.++++||+|+
T Consensus        77 ~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVVY  156 (234)
T PF04445_consen   77 PSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDVVY  156 (234)
T ss_dssp             --EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SEEE
T ss_pred             CEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEEE
Confidence            48999999999877766  688999999999                        267788888755 566788999999


Q ss_pred             ecccc
Q psy10644        173 FCLSL  177 (196)
Q Consensus       173 ~~~~l  177 (196)
                      +--++
T Consensus       157 ~DPMF  161 (234)
T PF04445_consen  157 FDPMF  161 (234)
T ss_dssp             E--S-
T ss_pred             ECCCC
Confidence            76555

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=92.09  E-value=0.44  Score=37.53  Aligned_cols=78  Identities=22%  Similarity=0.152  Sum_probs=52.1

Q ss_pred             CCEEEEEcCCCchhHhhc--c-CCeEEEEeCCC----------------CCceEEEecCCCC-CCCC--CceeeEeeccc
Q psy10644        119 RLVIADLGCGEAKLAAEL--T-QHKVHSLDLVA----------------LNERVTSCDMTRT-PLKP--YSVDVAVFCLS  176 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l--~-~~~v~giDls~----------------~~~~~~~~d~~~l-p~~~--~sfD~Vi~~~~  176 (196)
                      +.++||+=+|+|.++...  . ...++.+|.+.                .+..++..|.... +-..  +.||+|+.---
T Consensus        44 g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPP  123 (187)
T COG0742          44 GARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDPP  123 (187)
T ss_pred             CCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCCC
Confidence            789999999999997776  2 34999999998                3556666776532 2122  25999998766


Q ss_pred             cc-cc-CHHHHHHH--HHHhccCC
Q psy10644        177 LM-GT-DLAACIKE--ANRILKLG  196 (196)
Q Consensus       177 lh-~~-d~~~~l~e--~~rvLkpg  196 (196)
                      ++ .. +....+..  -..+|+|+
T Consensus       124 y~~~l~~~~~~~~~~~~~~~L~~~  147 (187)
T COG0742         124 YAKGLLDKELALLLLEENGWLKPG  147 (187)
T ss_pred             CccchhhHHHHHHHHHhcCCcCCC
Confidence            65 22 44444444  44567664

>PRK10742 putative methyltransferase; Provisional

Probab=91.88  E-value=0.39  Score=39.51  Aligned_cols=28  Identities=21%  Similarity=0.169  Sum_probs=26.1

Q ss_pred             EEEEEcCCCchhHhhc--cCCeEEEEeCCC
Q psy10644        121 VIADLGCGEAKLAAEL--TQHKVHSLDLVA  148 (196)
Q Consensus       121 ~ILDlGCG~G~~a~~l--~~~~v~giDls~  148 (196)
                      +|||+=+|.|..+..+  .+++|+++|-++
T Consensus        91 ~VLD~TAGlG~Da~~las~G~~V~~vEr~p  120 (250)
T PRK10742         91 DVVDATAGLGRDAFVLASVGCRVRMLERNP  120 (250)
T ss_pred             EEEECCCCccHHHHHHHHcCCEEEEEECCH
Confidence            8999999999998888  688999999998

>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown

Probab=91.84  E-value=0.68  Score=34.11  Aligned_cols=81  Identities=17%  Similarity=0.136  Sum_probs=43.4

Q ss_pred             HHHHHHhhcCCCCCEEEEEcCCCc-hhHhhc--cCCeEEEEeCCCC----CceEEEecCCCCCCC-CCceeeEeeccccc
Q psy10644        107 IIKSIQERESKGRLVIADLGCGEA-KLAAEL--TQHKVHSLDLVAL----NERVTSCDMTRTPLK-PYSVDVAVFCLSLM  178 (196)
Q Consensus       107 ~~~~l~~~~~~~~~~ILDlGCG~G-~~a~~l--~~~~v~giDls~~----~~~~~~~d~~~lp~~-~~sfD~Vi~~~~lh  178 (196)
                      +.+++.++..  ..+|+|||-|.- ..|..|  .+..|+++|+.+.    ++.++..|+.+-.+. -...|+|.+.--  
T Consensus         4 ~a~~ia~~~~--~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~~~a~~g~~~v~DDif~P~l~iY~~a~lIYSiRP--   79 (127)
T PF03686_consen    4 FAEYIARLNN--YGKIVEVGIGFNPEVAKKLKERGFDVIATDINPRKAPEGVNFVVDDIFNPNLEIYEGADLIYSIRP--   79 (127)
T ss_dssp             HHHHHHHHS---SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-S----STTEE---SSS--HHHHTTEEEEEEES---
T ss_pred             HHHHHHHhCC--CCcEEEECcCCCHHHHHHHHHcCCcEEEEECcccccccCcceeeecccCCCHHHhcCCcEEEEeCC--
Confidence            4455544333  459999999975 446666  5789999999996    888999998762211 235677665432  


Q ss_pred             ccCHHHHHHHHHH
Q psy10644        179 GTDLAACIKEANR  191 (196)
Q Consensus       179 ~~d~~~~l~e~~r  191 (196)
                      ..+....+.++.+
T Consensus        80 P~El~~~il~lA~   92 (127)
T PF03686_consen   80 PPELQPPILELAK   92 (127)
T ss_dssp             -TTSHHHHHHHHH
T ss_pred             ChHHhHHHHHHHH
Confidence            1244555555544

; PDB: 2K4M_A.

>KOG2793|consensus

Probab=91.80  E-value=0.67  Score=38.13  Aligned_cols=75  Identities=15%  Similarity=0.123  Sum_probs=43.3

Q ss_pred             CCEEEEEcCCCchhHhhc---cCCeEEEEeCCC------------------C--CceEEEecCCC---CCCCCCc-eeeE
Q psy10644        119 RLVIADLGCGEAKLAAEL---TQHKVHSLDLVA------------------L--NERVTSCDMTR---TPLKPYS-VDVA  171 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l---~~~~v~giDls~------------------~--~~~~~~~d~~~---lp~~~~s-fD~V  171 (196)
                      ..+||++|.|+|..+...   .+..|.-.|+..                  .  .+.+...+-.+   ..+-... ||+|
T Consensus        87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dli  166 (248)
T KOG2793|consen   87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDLI  166 (248)
T ss_pred             ceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccEE
Confidence            457999999999654444   456788888776                  1  12222222111   1111122 9999


Q ss_pred             eeccccccc-CHHHHHHHHHHhc
Q psy10644        172 VFCLSLMGT-DLAACIKEANRIL  193 (196)
Q Consensus       172 i~~~~lh~~-d~~~~l~e~~rvL  193 (196)
                      +++.++... .++.++.-++..|
T Consensus       167 lasDvvy~~~~~e~Lv~tla~ll  189 (248)
T KOG2793|consen  167 LASDVVYEEESFEGLVKTLAFLL  189 (248)
T ss_pred             EEeeeeecCCcchhHHHHHHHHH
Confidence            999999433 5555555554443

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=91.27  E-value=0.96  Score=36.17  Aligned_cols=78  Identities=13%  Similarity=0.047  Sum_probs=42.5

Q ss_pred             CCEEEEEcCCCchhHhhc--------cCCeEEEEeCCC--------------CCceEEEecCCCCC----CC--CCceee
Q psy10644        119 RLVIADLGCGEAKLAAEL--------TQHKVHSLDLVA--------------LNERVTSCDMTRTP----LK--PYSVDV  170 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l--------~~~~v~giDls~--------------~~~~~~~~d~~~lp----~~--~~sfD~  170 (196)
                      ...|+|+|.=.|.-+..+        ..++|+|+|+.-              .++.++++|..+..    ..  ....+-
T Consensus        33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~~  112 (206)
T PF04989_consen   33 PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPHP  112 (206)
T ss_dssp             -SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----SS
T ss_pred             CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCCc
Confidence            469999999888665443        457999999942              47899999875421    11  112333


Q ss_pred             E-eecccccc-cCHHHHHHHHHHhccCC
Q psy10644        171 A-VFCLSLMG-TDLAACIKEANRILKLG  196 (196)
Q Consensus       171 V-i~~~~lh~-~d~~~~l~e~~rvLkpg  196 (196)
                      + ++-.+-|. .+..+.|+....++++|
T Consensus       113 vlVilDs~H~~~hvl~eL~~y~plv~~G  140 (206)
T PF04989_consen  113 VLVILDSSHTHEHVLAELEAYAPLVSPG  140 (206)
T ss_dssp             EEEEESS----SSHHHHHHHHHHT--TT
T ss_pred             eEEEECCCccHHHHHHHHHHhCccCCCC
Confidence            3 33444453 37788888888888876

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=91.00  E-value=0.86  Score=39.76  Aligned_cols=37  Identities=11%  Similarity=-0.079  Sum_probs=30.2

Q ss_pred             EEEEeCCC----------------CCceEEEecCCCCCCCCCceeeEeecccc
Q psy10644        141 VHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAVFCLSL  177 (196)
Q Consensus       141 v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l  177 (196)
                      ++|+|+++                .-+.|.+.|+..++-+-+.+|+|||+--.
T Consensus       257 ~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPY  309 (381)
T COG0116         257 IYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPY  309 (381)
T ss_pred             EEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCc
Confidence            77999999                35789999998886544789999998654

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=90.74  E-value=1.1  Score=35.96  Aligned_cols=44  Identities=11%  Similarity=0.228  Sum_probs=34.6

Q ss_pred             HHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC
Q psy10644        105 DIIIKSIQERESKGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA  148 (196)
Q Consensus       105 ~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~  148 (196)
                      ..++.-|...+.+++.+||=||+-+|.....+    ....|+|++.|+
T Consensus        63 AaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~  110 (231)
T COG1889          63 AAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSP  110 (231)
T ss_pred             HHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecc
Confidence            34555555567778999999999999887776    335899999999

>KOG3115|consensus

Probab=90.32  E-value=0.22  Score=39.85  Aligned_cols=30  Identities=23%  Similarity=0.539  Sum_probs=23.1

Q ss_pred             CCEEEEEcCCCchhHhhc----cCCeEEEEeCCC
Q psy10644        119 RLVIADLGCGEAKLAAEL----TQHKVHSLDLVA  148 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l----~~~~v~giDls~  148 (196)
                      .-.++|||||-|.+...|    +..-+.|.+|--
T Consensus        61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~   94 (249)
T KOG3115|consen   61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRD   94 (249)
T ss_pred             cceEEeeccCccchhhhccccCccceeeeehhhH
Confidence            457899999999987777    445788887643

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=89.13  E-value=0.47  Score=41.09  Aligned_cols=78  Identities=19%  Similarity=0.162  Sum_probs=43.5

Q ss_pred             CCEEEEEcCCCchhHhhccC-----CeEEEEeCCC----------CCce-----EEEecC--CCCCCC-CCceeeEeecc
Q psy10644        119 RLVIADLGCGEAKLAAELTQ-----HKVHSLDLVA----------LNER-----VTSCDM--TRTPLK-PYSVDVAVFCL  175 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l~~-----~~v~giDls~----------~~~~-----~~~~d~--~~lp~~-~~sfD~Vi~~~  175 (196)
                      ..+|||+|.|.|.-+-.+..     ..++-++.|+          .++.     +...|+  ..++++ ...|++|+...
T Consensus       114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~~  193 (484)
T COG5459         114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVLD  193 (484)
T ss_pred             cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhhh
Confidence            45799999887765544411     2455555665          1221     222222  123333 35677777666


Q ss_pred             cc-ccc---CHHHHHHHHHHhccCC
Q psy10644        176 SL-MGT---DLAACIKEANRILKLG  196 (196)
Q Consensus       176 ~l-h~~---d~~~~l~e~~rvLkpg  196 (196)
                      -| |..   .....|+.+..++.||
T Consensus       194 eLl~d~~ek~i~~~ie~lw~l~~~g  218 (484)
T COG5459         194 ELLPDGNEKPIQVNIERLWNLLAPG  218 (484)
T ss_pred             hhccccCcchHHHHHHHHHHhccCC
Confidence            65 422   3445788888888776

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=88.41  E-value=1.2  Score=38.85  Aligned_cols=78  Identities=18%  Similarity=0.062  Sum_probs=52.9

Q ss_pred             CCEEEEEcCCCchhHhhc---c-CCeEEEEeCCC----------------------CCceEEEecCCCC-CCCCCceeeE
Q psy10644        119 RLVIADLGCGEAKLAAEL---T-QHKVHSLDLVA----------------------LNERVTSCDMTRT-PLKPYSVDVA  171 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l---~-~~~v~giDls~----------------------~~~~~~~~d~~~l-p~~~~sfD~V  171 (196)
                      -.++|=+|.|.|..++.+   + -.+|+-+|++|                      +++.++..|..++ .-..+.||+|
T Consensus       290 a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~v  369 (508)
T COG4262         290 ARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVV  369 (508)
T ss_pred             cceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEE
Confidence            468999999999999999   3 23899999998                      3566666676442 3345689998


Q ss_pred             eecccc------cccCHHHHHHHHHHhccCC
Q psy10644        172 VFCLSL------MGTDLAACIKEANRILKLG  196 (196)
Q Consensus       172 i~~~~l------h~~d~~~~l~e~~rvLkpg  196 (196)
                      |.-+-=      --.--.++..-+.|.|+++
T Consensus       370 IVDl~DP~tps~~rlYS~eFY~ll~~~l~e~  400 (508)
T COG4262         370 IVDLPDPSTPSIGRLYSVEFYRLLSRHLAET  400 (508)
T ss_pred             EEeCCCCCCcchhhhhhHHHHHHHHHhcCcC
Confidence            864321      1113456666666766653

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=87.46  E-value=0.9  Score=37.76  Aligned_cols=55  Identities=16%  Similarity=0.128  Sum_probs=39.3

Q ss_pred             EEEEEcCCCchhHhhc--cCC-eEEEEeCCCC---------CceEEEecCCCCCCC--CCceeeEeecc
Q psy10644        121 VIADLGCGEAKLAAEL--TQH-KVHSLDLVAL---------NERVTSCDMTRTPLK--PYSVDVAVFCL  175 (196)
Q Consensus       121 ~ILDlGCG~G~~a~~l--~~~-~v~giDls~~---------~~~~~~~d~~~lp~~--~~sfD~Vi~~~  175 (196)
                      +++|+-||.|.+..-+  .+. .|.++|+++.         ...++.+|+..+...  ...+|+++...
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~~~~~~Di~~~~~~~~~~~~D~l~~gp   70 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPNKLIEGDITKIDEKDFIPDIDLLTGGF   70 (275)
T ss_pred             cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCCCCccCccccCchhhcCCCCCEEEeCC
Confidence            6899999999997666  445 5678999981         223567788776432  35699998754

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>KOG2651|consensus

Probab=87.11  E-value=1.2  Score=39.05  Aligned_cols=30  Identities=20%  Similarity=0.259  Sum_probs=27.0

Q ss_pred             CCEEEEEcCCCchhHhhc---cCCeEEEEeCCC
Q psy10644        119 RLVIADLGCGEAKLAAEL---TQHKVHSLDLVA  148 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l---~~~~v~giDls~  148 (196)
                      -..++|+|.|-|.+++.|   .+..|.+||-|.
T Consensus       154 i~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq  186 (476)
T KOG2651|consen  154 IDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQ  186 (476)
T ss_pred             CCeeEEcCCCchHHHHHHhhccCceEEEeccch
Confidence            568999999999999999   466999999997

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=87.04  E-value=1.4  Score=36.00  Aligned_cols=30  Identities=23%  Similarity=0.540  Sum_probs=22.8

Q ss_pred             CCEEEEEcCCCchhHhhc----c--------CCeEEEEeCCC
Q psy10644        119 RLVIADLGCGEAKLAAEL----T--------QHKVHSLDLVA  148 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l----~--------~~~v~giDls~  148 (196)
                      ..+|+|+|+|+|.++..+    .        ..+++-++.|+
T Consensus        19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp   60 (252)
T PF02636_consen   19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISP   60 (252)
T ss_dssp             -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTC
T ss_pred             CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCH
Confidence            479999999999997776    1        24899999998

; PDB: 4F3N_A 1ZKD_B.

>PHA01634 hypothetical protein

Probab=87.00  E-value=1.9  Score=32.08  Aligned_cols=55  Identities=16%  Similarity=-0.007  Sum_probs=37.4

Q ss_pred             CCCEEEEEcCCCchhHhhc--cC-CeEEEEeCCC-------CCc-eEEEecC----CCCCCCCCceeeEe
Q psy10644        118 GRLVIADLGCGEAKLAAEL--TQ-HKVHSLDLVA-------LNE-RVTSCDM----TRTPLKPYSVDVAV  172 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l--~~-~~v~giDls~-------~~~-~~~~~d~----~~lp~~~~sfD~Vi  172 (196)
                      .+.+|+|||.+-|..+..+  .+ ..|++++.++       .++ .+.++|-    .+++-.-+.||+.+
T Consensus        28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~eW~~~Y~~~Di~~   97 (156)
T PHA01634         28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKGEWNGEYEDVDIFV   97 (156)
T ss_pred             cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhheeeeceeecccccccCCCcceEE
Confidence            3679999999999998888  34 4899999998       122 1233331    23444556788754

>KOG1098|consensus

Probab=86.30  E-value=0.49  Score=43.67  Aligned_cols=42  Identities=21%  Similarity=0.146  Sum_probs=33.1

Q ss_pred             CCCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC----CCceEEEecCC
Q psy10644        118 GRLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA----LNERVTSCDMT  159 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~----~~~~~~~~d~~  159 (196)
                      +...||||||-.|.|.+..     .+.-|+|+|+.|    +++...+.|+.
T Consensus        44 ~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pikp~~~c~t~v~dIt   94 (780)
T KOG1098|consen   44 KAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIKPIPNCDTLVEDIT   94 (780)
T ss_pred             ccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecccCCccchhhhhhh
Confidence            4678999999999996555     466899999999    56666666664

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=85.23  E-value=1.3  Score=34.60  Aligned_cols=44  Identities=14%  Similarity=0.193  Sum_probs=28.6

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC
Q psy10644        104 VDIIIKSIQERESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA  148 (196)
Q Consensus       104 ~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~  148 (196)
                      ...+...|. ....++..|||.=||+|..+...  .+.+.+|+|+++
T Consensus       178 ~~l~~~lI~-~~t~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~  223 (231)
T PF01555_consen  178 VELIERLIK-ASTNPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDE  223 (231)
T ss_dssp             HHHHHHHHH-HHS-TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSH
T ss_pred             HHHHHHHHH-hhhccceeeehhhhccChHHHHHHHcCCeEEEEeCCH
Confidence            333333343 33345889999999999886666  688999999986

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=84.54  E-value=0.78  Score=38.36  Aligned_cols=59  Identities=14%  Similarity=0.195  Sum_probs=41.6

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC---------------CCceEEEecCCCC-C-CCCCceeeEe
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA---------------LNERVTSCDMTRT-P-LKPYSVDVAV  172 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~---------------~~~~~~~~d~~~l-p-~~~~sfD~Vi  172 (196)
                      .+.++..|||+.+|.|.=+..+     ....|++.|+++               .++.+...|.... + .....||.|+
T Consensus        82 ~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vl  161 (283)
T PF01189_consen   82 DPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVL  161 (283)
T ss_dssp             TTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEE
T ss_pred             cccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhh
Confidence            4556889999999999665444     256999999998               3555665665443 1 2334699998


Q ss_pred             e
Q psy10644        173 F  173 (196)
Q Consensus       173 ~  173 (196)
                      .
T Consensus       162 v  162 (283)
T PF01189_consen  162 V  162 (283)
T ss_dssp             E
T ss_pred             c
Confidence            5

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=84.38  E-value=5.4  Score=33.41  Aligned_cols=32  Identities=19%  Similarity=0.182  Sum_probs=27.8

Q ss_pred             CCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC
Q psy10644        117 KGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA  148 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~  148 (196)
                      .+++..+|+|+-.|.++-.|  .+-.|+++|.-+
T Consensus       210 ~~~M~avDLGAcPGGWTyqLVkr~m~V~aVDng~  243 (358)
T COG2933         210 APGMWAVDLGACPGGWTYQLVKRNMRVYAVDNGP  243 (358)
T ss_pred             cCCceeeecccCCCccchhhhhcceEEEEeccch
Confidence            35899999999999999998  456999999877

>COG1255 Uncharacterized protein conserved in archaea [Function unknown]

Probab=82.57  E-value=7.7  Score=28.25  Aligned_cols=72  Identities=18%  Similarity=0.217  Sum_probs=45.2

Q ss_pred             CCEEEEEcCCCc-hhHhhc--cCCeEEEEeCCC----CCceEEEecCCCCCCC-CCceeeEeeccccccc-CHHHHHHHH
Q psy10644        119 RLVIADLGCGEA-KLAAEL--TQHKVHSLDLVA----LNERVTSCDMTRTPLK-PYSVDVAVFCLSLMGT-DLAACIKEA  189 (196)
Q Consensus       119 ~~~ILDlGCG~G-~~a~~l--~~~~v~giDls~----~~~~~~~~d~~~lp~~-~~sfD~Vi~~~~lh~~-d~~~~l~e~  189 (196)
                      ..+|+++|-|-= ..+..|  .++.|+++|+.+    ..+++.+.|+.+-.+. ....|+|.+   +-.+ +....+-.+
T Consensus        14 ~gkVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~~a~~g~~~v~DDitnP~~~iY~~A~lIYS---iRpppEl~~~ildv   90 (129)
T COG1255          14 RGKVVEVGIGFFLDVAKRLAERGFDVLATDINEKTAPEGLRFVVDDITNPNISIYEGADLIYS---IRPPPELQSAILDV   90 (129)
T ss_pred             CCcEEEEccchHHHHHHHHHHcCCcEEEEecccccCcccceEEEccCCCccHHHhhCccceee---cCCCHHHHHHHHHH
Confidence            458999998864 336666  568999999998    4567899998763221 133455544   3222 445555555


Q ss_pred             HHhc
Q psy10644        190 NRIL  193 (196)
Q Consensus       190 ~rvL  193 (196)
                      .+.+
T Consensus        91 a~aV   94 (129)
T COG1255          91 AKAV   94 (129)
T ss_pred             HHhh
Confidence            5443

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=81.52  E-value=3.9  Score=34.79  Aligned_cols=71  Identities=13%  Similarity=0.138  Sum_probs=43.8

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC--------------CCceEEEecCCCCC---
Q psy10644        104 VDIIIKSIQERESKGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA--------------LNERVTSCDMTRTP---  162 (196)
Q Consensus       104 ~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~--------------~~~~~~~~d~~~lp---  162 (196)
                      .+.+++.|.   +.++..++|.=.|.|..+..+    ++.+|+|+|.++              .++.++.++..++.   
T Consensus         9 l~Evl~~L~---~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l~~~l   85 (310)
T PF01795_consen    9 LKEVLEALN---PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNLDEYL   85 (310)
T ss_dssp             HHHHHHHHT-----TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGHHHHH
T ss_pred             HHHHHHhhC---cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHHHHHH
Confidence            455666663   455779999988999887777    458999999998              35667777665442   


Q ss_pred             --C-CCCceeeEeecccc
Q psy10644        163 --L-KPYSVDVAVFCLSL  177 (196)
Q Consensus       163 --~-~~~sfD~Vi~~~~l  177 (196)
                        . ....+|.|++-+.+
T Consensus        86 ~~~~~~~~~dgiL~DLGv  103 (310)
T PF01795_consen   86 KELNGINKVDGILFDLGV  103 (310)
T ss_dssp             HHTTTTS-EEEEEEE-S-
T ss_pred             HHccCCCccCEEEEcccc
Confidence              2 34589999876655

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=81.44  E-value=3.2  Score=35.99  Aligned_cols=42  Identities=17%  Similarity=0.297  Sum_probs=30.8

Q ss_pred             HHHHHHhhcCCCCCEEEEEcCCCchhHhhc------------cCCeEEEEeCCC
Q psy10644        107 IIKSIQERESKGRLVIADLGCGEAKLAAEL------------TQHKVHSLDLVA  148 (196)
Q Consensus       107 ~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l------------~~~~v~giDls~  148 (196)
                      +++.+..........|++||.|+|.++..+            ...++.-++.|+
T Consensus        66 ~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~  119 (370)
T COG1565          66 FLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSP  119 (370)
T ss_pred             HHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCH
Confidence            344444444444678999999999997776            245899999998

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=80.66  E-value=7.4  Score=33.53  Aligned_cols=65  Identities=12%  Similarity=0.115  Sum_probs=38.0

Q ss_pred             HHhhcCCCCCEEEEEcCCCch--hHhhc---cCCeEEEEeCCCC---------CceEEEec-CCCCCCCCCceeeEeecc
Q psy10644        111 IQERESKGRLVIADLGCGEAK--LAAEL---TQHKVHSLDLVAL---------NERVTSCD-MTRTPLKPYSVDVAVFCL  175 (196)
Q Consensus       111 l~~~~~~~~~~ILDlGCG~G~--~a~~l---~~~~v~giDls~~---------~~~~~~~d-~~~lp~~~~sfD~Vi~~~  175 (196)
                      |+....+++..|+=+|+| |.  .+..+   .+.+|+++|.++.         ...++... ....+--.+.||+|+..-
T Consensus       159 lk~~~~~pG~~V~I~G~G-GlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv  237 (339)
T COG1064         159 LKKANVKPGKWVAVVGAG-GLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTV  237 (339)
T ss_pred             hhhcCCCCCCEEEEECCc-HHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECC
Confidence            333344568899999988 63  33333   4689999999992         22333322 111111112389988776


Q ss_pred             c
Q psy10644        176 S  176 (196)
Q Consensus       176 ~  176 (196)
                      .
T Consensus       238 ~  238 (339)
T COG1064         238 G  238 (339)
T ss_pred             C
Confidence            6

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=80.20  E-value=6.3  Score=32.40  Aligned_cols=64  Identities=13%  Similarity=0.090  Sum_probs=40.7

Q ss_pred             CCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC-----------C------CceEEEe-cCC----CCCCCCCceee
Q psy10644        117 KGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA-----------L------NERVTSC-DMT----RTPLKPYSVDV  170 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~-----------~------~~~~~~~-d~~----~lp~~~~sfD~  170 (196)
                      +++.++||||.|.--+-..+    -+++.+|.|+++           .      .+++... |-.    .+--.++.||+
T Consensus        77 ~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~  156 (292)
T COG3129          77 GKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDA  156 (292)
T ss_pred             cCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeee
Confidence            35678999999876554444    467899999988           1      1222211 211    12223678999


Q ss_pred             Eeeccccccc
Q psy10644        171 AVFCLSLMGT  180 (196)
Q Consensus       171 Vi~~~~lh~~  180 (196)
                      ++|+--+|..
T Consensus       157 tlCNPPFh~s  166 (292)
T COG3129         157 TLCNPPFHDS  166 (292)
T ss_pred             EecCCCcchh
Confidence            9999888743

>KOG1501|consensus

Probab=80.07  E-value=3.1  Score=37.25  Aligned_cols=75  Identities=17%  Similarity=0.198  Sum_probs=43.1

Q ss_pred             CCEEEEEcCCCchhHhhc--c-CCeEEEEeCCC----------------CCceEEEecCCCCCCC-CCceeeEeeccccc
Q psy10644        119 RLVIADLGCGEAKLAAEL--T-QHKVHSLDLVA----------------LNERVTSCDMTRTPLK-PYSVDVAVFCLSLM  178 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l--~-~~~v~giDls~----------------~~~~~~~~d~~~lp~~-~~sfD~Vi~~~~lh  178 (196)
                      ...+||||.|||.++...  . +-.|++++.-.                .++.++.-.-.++... ....|+++.-...-
T Consensus        67 kv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~e~fdt  146 (636)
T KOG1501|consen   67 KVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVREDFDT  146 (636)
T ss_pred             eEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhHhhhhh
Confidence            346899999999997665  2 33789987544                3555554443333322 23356655544431


Q ss_pred             ---ccCHHHHHHHHHHhc
Q psy10644        179 ---GTDLAACIKEANRIL  193 (196)
Q Consensus       179 ---~~d~~~~l~e~~rvL  193 (196)
                         +......++++++.|
T Consensus       147 EligeGalps~qhAh~~L  164 (636)
T KOG1501|consen  147 ELIGEGALPSLQHAHDML  164 (636)
T ss_pred             hhhccccchhHHHHHHHh
Confidence               223445566666644

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	196
2zfu_A	215	Structure Of The Methyltransferase-Like Domain Of N		4e-40

>pdb|2ZFU|A Chain A, Structure Of The Methyltransferase-Like Domain Of Nucleomethylin Length = 215

Iteration: 1
 Score =  160 bits (405), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 74/147 (50%), Positives = 104/147 (70%), Gaps = 3/147 (2%)
Query: 50  LLNKLKSARFRYLNEQLYTSKSEESKDFFTEDRESFEAYHEGFKKQVTQWPINPVDIIIK 109
           +  +L  ARFRYLNEQLY+  S  ++  F ED E+F  YH GF+ QV +WP+ PVD I +
Sbjct: 1   MAQRLDGARFRYLNEQLYSGPSSAAQRLFQEDPEAFLLYHRGFQSQVKKWPLQPVDRIAR 60
Query: 110 SIQERESKGRLVIADLGCGEAKLAAELTQHKVHSLDLVALNERVTSCDMTRTPLKPYSVD 169
            +++R +   LV+AD GCG+ +LA+ + ++ VH  DL +L+ RVT CDM + PL+  SVD
Sbjct: 61  DLRQRPAS--LVVADFGCGDCRLASSI-RNPVHCFDLASLDPRVTVCDMAQVPLEDESVD 117
Query: 170 VAVFCLSLMGTDLAACIKEANRILKLG 196
           VAVFCLSLMGT++   ++EANR+LK G
Sbjct: 118 VAVFCLSLMGTNIRDFLEEANRVLKPG 144

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	196
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	3e-54
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	2e-08
3i9f_A	170	Putative type 11 methyltransferase; structural gen	4e-08
3ege_A	261	Putative methyltransferase from antibiotic biosyn	2e-07
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	4e-07
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	6e-07
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	2e-06
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	2e-06
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	3e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	7e-06
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	8e-06
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	8e-06
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	9e-06
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	2e-05
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	3e-05
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	4e-05
3f4k_A	257	Putative methyltransferase; structural genomics, P	1e-04
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	1e-04
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	2e-04
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	2e-04
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	2e-04
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	2e-04
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	4e-04
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	5e-04
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	5e-04
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	8e-04

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} Length = 215

 Score =  171 bits (434), Expect = 3e-54
 Identities = 74/147 (50%), Positives = 102/147 (69%), Gaps = 3/147 (2%)

Query: 50  LLNKLKSARFRYLNEQLYTSKSEESKDFFTEDRESFEAYHEGFKKQVTQWPINPVDIIIK 109
           +  +L  ARFRYLNEQLY+  S  ++  F ED E+F  YH GF+ QV +WP+ PVD I +
Sbjct: 1   MAQRLDGARFRYLNEQLYSGPSSAAQRLFQEDPEAFLLYHRGFQSQVKKWPLQPVDRIAR 60

Query: 110 SIQERESKGRLVIADLGCGEAKLAAELTQHKVHSLDLVALNERVTSCDMTRTPLKPYSVD 169
            +  R+    LV+AD GCG+ +LA+ + ++ VH  DL +L+ RVT CDM + PL+  SVD
Sbjct: 61  DL--RQRPASLVVADFGCGDCRLASSI-RNPVHCFDLASLDPRVTVCDMAQVPLEDESVD 117

Query: 170 VAVFCLSLMGTDLAACIKEANRILKLG 196
           VAVFCLSLMGT++   ++EANR+LK G
Sbjct: 118 VAVFCLSLMGTNIRDFLEEANRVLKPG 144

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227

 Score = 51.3 bits (123), Expect = 2e-08
 Identities = 18/146 (12%), Positives = 42/146 (28%), Gaps = 20/146 (13%)

Query: 64  EQLYTSKSEESKDFFTEDRESFEAYHEGFKKQVTQWPINPVDIIIKSIQERESKGRLVIA 123
           E +  +  +   D + ++    +A+ +  +    +      D  I  +     +    + 
Sbjct: 3   EPIMRNPEDALLDSWHQN---AQAWIDAVRHGAIESRRQVTDQAI--LLAILGRQPERVL 57

Query: 124 DLGCGEAKLAAELTQ--HKVHSLDL------------VALNERVTSCDMT-RTPLKPYSV 168
           DLGCGE  L   L     +   +D                    +   +           
Sbjct: 58  DLGCGEGWLLRALADRGIEAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDY 117

Query: 169 DVAVFCLSLMGTDLAACIKEANRILK 194
           D+     +L+  D+   +     +L 
Sbjct: 118 DLICANFALLHQDIIELLSAMRTLLV 143

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170

 Score = 50.0 bits (120), Expect = 4e-08
 Identities = 26/98 (26%), Positives = 37/98 (37%), Gaps = 13/98 (13%)

Query: 107 IIKSIQERESKGRLVIADLGCGEAKLAAELTQH--KVHSLD-----LVALNERVTS--CD 157
            + +I E +     VI D GCG       L +   K++ +D     L  + E+  S    
Sbjct: 9   YLPNIFEGKKG---VIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKEKFDSVITL 65

Query: 158 MTRTPLKPYSVDVAVFCLSLMGT-DLAACIKEANRILK 194
                +   SVD  +F  S     D    I E  RILK
Sbjct: 66  SDPKEIPDNSVDFILFANSFHDMDDKQHVISEVKRILK 103

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261

 Score = 48.7 bits (116), Expect = 2e-07
 Identities = 22/112 (19%), Positives = 39/112 (34%), Gaps = 17/112 (15%)

Query: 97  TQWPINPVDIIIKSIQERESKGRLVIADLGCGEAKLAAELTQHKVH------SLDLVAL- 149
               I  V+ II  +     KG ++ AD+G G    +  L    +       S+ +    
Sbjct: 18  PDIRI--VNAIINLLNLP--KGSVI-ADIGAGTGGYSVALANQGLFVYAVEPSIVMRQQA 72

Query: 150 ----NERVTSCDMTRTPLKPYSVDVAVFCLSLMG-TDLAACIKEANRILKLG 196
                    +       L   SVD  +  L++   + L    +E  RI++ G
Sbjct: 73  VVHPQVEWFTGYAENLALPDKSVDGVISILAIHHFSHLEKSFQEMQRIIRDG 124

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243

 Score = 47.9 bits (114), Expect = 4e-07
 Identities = 22/91 (24%), Positives = 31/91 (34%), Gaps = 16/91 (17%)

Query: 122 IADLGCGEAKLAAELTQH---KVHSLDL------------VALNERVTSCDMTRTPLKPY 166
           I DLGCG         +H    V  LDL                      D+ +  L   
Sbjct: 47  IVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQD 106

Query: 167 SVDVAVFCLSLM-GTDLAACIKEANRILKLG 196
           S D+A   L+L    D+A   +  ++ L  G
Sbjct: 107 SFDLAYSSLALHYVEDVARLFRTVHQALSPG 137

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195

 Score = 46.7 bits (111), Expect = 6e-07
 Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 16/89 (17%)

Query: 122 IADLGCGEAKLAAELTQ--HKVHSLDL----VAL------NERVTSCDMTRTPLKPYSVD 169
           I D GCG+ ++   L++  H V   DL    +          R    D++   +     D
Sbjct: 50  ILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFD 109

Query: 170 VAVFCLSLMGT----DLAACIKEANRILK 194
           + V   ++MG          +   +R L 
Sbjct: 110 LIVSAGNVMGFLAEDGREPALANIHRALG 138

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253

 Score = 46.1 bits (109), Expect = 2e-06
 Identities = 17/91 (18%), Positives = 29/91 (31%), Gaps = 16/91 (17%)

Query: 122 IADLGCGEAKLAAELTQH---KVHSLDL------------VALNERVTSCDMTRTPLKPY 166
           + DLGCG         +H   KV  +DL             +         +    ++P 
Sbjct: 48  VLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPD 107

Query: 167 SVDVAVFCLSLM-GTDLAACIKEANRILKLG 196
           + +V +  L+L          K+    LK  
Sbjct: 108 AYNVVLSSLALHYIASFDDICKKVYINLKSS 138

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260

 Score = 46.0 bits (109), Expect = 2e-06
 Identities = 22/149 (14%), Positives = 42/149 (28%), Gaps = 40/149 (26%)

Query: 69  SKSEESKDFFTE---------DRESFEAYHEGFKKQVTQWPINPVDIIIKSIQERESKGR 119
                S +F+           +   ++ YH      + ++  NP  ++            
Sbjct: 12  HMKLRSWEFYDRIARAYDSMYETPKWKLYHRLIGSFLEEYLKNPCRVL------------ 59

Query: 120 LVIADLGCGEAKLAAELTQ--HKVHSLDLVA---------LNERVTSCDMTRTPLKPYSV 168
               DLG G  K +  L +   +V  +D              + V        P    + 
Sbjct: 60  ----DLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAF 115

Query: 169 DVAVFCLSLM---GTDLAACIKEANRILK 194
           + AV  L  +     +      E  R+L 
Sbjct: 116 E-AVLALGDVLSYVENKDKAFSEIRRVLV 143

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263

 Score = 45.3 bits (107), Expect = 3e-06
 Identities = 22/93 (23%), Positives = 32/93 (34%), Gaps = 17/93 (18%)

Query: 121 VIADLGCGEAKLAAELTQ--HKVHSLDLVA--------------LNERVTSCDMTRTPLK 164
           V  +LG G  ++A  L    ++  +LD  A                 +V   D    PL 
Sbjct: 42  VFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLP 101

Query: 165 PYSVDVAVFCLSLMG-TDLAACIKEANRILKLG 196
             SV   +         D    + EA R+LK G
Sbjct: 102 DESVHGVIVVHLWHLVPDWPKVLAEAIRVLKPG 134

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 4e-06
 Identities = 23/143 (16%), Positives = 50/143 (34%), Gaps = 28/143 (19%)

Query: 18  SNSNVPNILATSSGGHKKEKYYNSKHTPLREKLLNKLKSARFRYLNEQ-------LYTSK 70
           S   + +I+ +                 L   LL+K +    +++ E        L +  
Sbjct: 47  SKEEIDHIIMS---KDAVSGTLR-----LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPI 98

Query: 71  SEESKDFFTEDRESFEAYHEG-------FKK-QVTQWPINPVDIIIKSIQE-RESKGRLV 121
             E +   +     +    +        F K  V++  + P   + +++ E R +K  L+
Sbjct: 99  KTEQRQP-SMMTRMYIEQRDRLYNDNQVFAKYNVSR--LQPYLKLRQALLELRPAKNVLI 155

Query: 122 IADLGCGEAKLAAE-LTQHKVHS 143
              LG G+  +A +    +KV  
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQC 178

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203

 Score = 43.6 bits (103), Expect = 7e-06
 Identities = 16/90 (17%), Positives = 29/90 (32%), Gaps = 15/90 (16%)

Query: 122 IADLGCGEAKLAAELTQ--HKVHSLDL----VAL-NERVTSC-----DMTRTPLKPYSVD 169
           I D+G G  +    L    H++  L+     V L  +   S       +T     P    
Sbjct: 45  ILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWA 104

Query: 170 VAVFCLSLM---GTDLAACIKEANRILKLG 196
             +   SL+     +L   +      ++ G
Sbjct: 105 GLLAWYSLIHMGPGELPDALVALRMAVEDG 134

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269

 Score = 44.1 bits (104), Expect = 8e-06
 Identities = 31/154 (20%), Positives = 54/154 (35%), Gaps = 26/154 (16%)

Query: 57  ARFRYLNEQLYTSKSEESKDFFTEDRESFEAYHEGFKKQVTQWPINPVDIIIKSIQERES 116
           A+  Y+N  L   + + S+D   +  E  +A          Q   + +   +  ++ER  
Sbjct: 30  AKEGYVN--LLPVQHKRSRDP-GDSAEMMQARRAFLDAGHYQPLRDAI---VAQLRERLD 83

Query: 117 KGRLVIADLGCGE----AKLAAELTQHKVHSLDL--------VALNERVTSC--DMTRTP 162
                + D+GCGE       A  L +     LD+             +VT C     R P
Sbjct: 84  DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLP 143

Query: 163 LKPYSVDVAVFCLSLMGTDLAACIKEANRILKLG 196
               S+D  +   +          +E  R++K G
Sbjct: 144 FSDTSMDAIIRIYAP------CKAEELARVVKPG 171

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242

 Score = 44.1 bits (104), Expect = 8e-06
 Identities = 23/140 (16%), Positives = 53/140 (37%), Gaps = 22/140 (15%)

Query: 72  EESKDFFTEDRESFEAYHEGFKKQVTQWPINPVDIIIKSIQERESKGRLVIADLGCGEAK 131
           E ++  +  D  + E +++  ++    W       II   ++   K   V+ D+GCG+  
Sbjct: 14  ESAEKKW--DSSA-EFWNQNSQEM---WDSGSRSTIIPFFEQYVKKEAEVL-DVGCGDGY 66

Query: 132 LAAELTQ--HKVHSLDLV----------ALNERVT--SCDMTRTPLKPYSVDVAVFCLSL 177
              +L++  +K   +D+                ++    D++  P +    +  +   SL
Sbjct: 67  GTYKLSRTGYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSL 126

Query: 178 M-GTDLAACIKEANRILKLG 196
               +    + E  R+LK  
Sbjct: 127 EWTEEPLRALNEIKRVLKSD 146

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227

 Score = 43.7 bits (103), Expect = 9e-06
 Identities = 22/131 (16%), Positives = 45/131 (34%), Gaps = 20/131 (15%)

Query: 83  ESFEAYHEGFKKQVTQWPINPVDIIIKSIQERESKGRLVIADLGCGEAKLAAELTQ--HK 140
           + +      +    +Q   + ++ +   + +   K   V+ DL CG    +  L     +
Sbjct: 4   KEYYRVFPTYTDINSQEYRSRIETLEPLLMKYMKKRGKVL-DLACGVGGFSFLLEDYGFE 62

Query: 141 VHSLDL------VA--------LNERVTSCDMTRTPLKPYSVDVAVFCLSLM---GTDLA 183
           V  +D+       A         N      D  +   +  + D  +F  S++     +L 
Sbjct: 63  VVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELN 122

Query: 184 ACIKEANRILK 194
              KE  R+LK
Sbjct: 123 QVFKEVRRVLK 133

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 17/98 (17%), Positives = 35/98 (35%), Gaps = 23/98 (23%)

Query: 121 VIADLGCGEAKLAAELTQH-----KVHSLD-----LVALNERVTS----------CDMTR 160
            + D+G G       L++      KV+++D     +    E+V             +  +
Sbjct: 40  TVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENK 99

Query: 161 TPLKPYSVDVA--VFCLSLMGTDLAACIKEANRILKLG 196
            PL   +VD     F    + ++    ++E  R+ K  
Sbjct: 100 IPLPDNTVDFIFMAFTFHEL-SEPLKFLEELKRVAKPF 136

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211

 Score = 42.5 bits (100), Expect = 3e-05
 Identities = 15/85 (17%), Positives = 26/85 (30%), Gaps = 13/85 (15%)

Query: 124 DLGCGEAKLAAELTQHKVHSLDL------VA----LNERVTSCDMTRTPLKPYSVDVAV- 172
           ++G G       L   +   ++       V                  P    S DV + 
Sbjct: 42  EVGAGTGYWLRRLPYPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLL 101

Query: 173 -FCLSLMGTDLAACIKEANRILKLG 196
              L  +  D+   + EA R+L+ G
Sbjct: 102 FTTLEFV-EDVERVLLEARRVLRPG 125

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220

 Score = 41.8 bits (98), Expect = 4e-05
 Identities = 20/142 (14%), Positives = 47/142 (33%), Gaps = 21/142 (14%)

Query: 71  SEESKDFFTEDRESFEAYHEGFKKQVTQWPINPVDIIIKSIQERESKGRLVIADLGCGEA 130
             E    F E   +++++ +G   Q  +            +++  +K    + + G G  
Sbjct: 2   GTEFNGLFDEWAHTYDSFVQGEDIQYKEV----FAHYEDILEDVVNKSFGNVLEFGVGTG 57

Query: 131 KLAAELTQ--HKVHSLDL-----------VALNERVTSCDMTRTPLKPYSVDVAVFCLSL 177
            L  +L      V+ ++            +     +T  D     + P S+D  V   + 
Sbjct: 58  NLTNKLLLAGRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEV-PTSIDTIVSTYAF 116

Query: 178 M---GTDLAACIKEANRILKLG 196
                 +    I + +++L  G
Sbjct: 117 HHLTDDEKNVAIAKYSQLLNKG 138

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257

 Score = 40.6 bits (95), Expect = 1e-04
 Identities = 24/151 (15%), Positives = 50/151 (33%), Gaps = 34/151 (22%)

Query: 71  SEESKDFFTEDRESFEAYHEGFKKQ------VTQWPINPVDIIIKSIQERESKGRLVIAD 124
           S  +      D      Y +  K+Q       T+  ++ ++ +              IAD
Sbjct: 2   SNNNTSIHDFDFSFICNYFKLLKRQGPGSPEATRKAVSFINEL---------TDDAKIAD 52

Query: 125 LGCG---EAKLAAELTQHKVHSLDLVA--------------LNERVT--SCDMTRTPLKP 165
           +GCG   +    A+  + ++  +DL                  +RV   +  M   P + 
Sbjct: 53  IGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQN 112

Query: 166 YSVDVAVFCLSLMGTDLAACIKEANRILKLG 196
             +D+     ++        + E ++ LK G
Sbjct: 113 EELDLIWSEGAIYNIGFERGMNEWSKYLKKG 143

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219

 Score = 40.2 bits (94), Expect = 1e-04
 Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 13/98 (13%)

Query: 108 IKSIQERESKGRLVIADLGCGEAKLAAELTQHKVHSLDL------VAL--NERVTSCDMT 159
           +++++    +GR V  ++G G  + A  L       ++       +A      V      
Sbjct: 39  LQAVKCLLPEGRGV--EIGVGTGRFAVPL--KIKIGVEPSERMAEIARKRGVFVLKGTAE 94

Query: 160 RTPLKPYSVDVAVFCLSLM-GTDLAACIKEANRILKLG 196
             PLK  S D A+   ++    D    +KEA RILK G
Sbjct: 95  NLPLKDESFDFALMVTTICFVDDPERALKEAYRILKKG 132

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218

 Score = 39.9 bits (93), Expect = 2e-04
 Identities = 16/138 (11%), Positives = 34/138 (24%), Gaps = 19/138 (13%)

Query: 73  ESKDFFTEDRESFEAYHEGFKKQVTQWPINPVDIIIKSIQERESKGRLVIADLGCGEAKL 132
            S          + A    +      +  +     ++ ++    +G   + +L  G    
Sbjct: 3   TSHGLIESQLSYYRARASEYDATFVPYMDSAAPAALERLRAGNIRGD--VLELASGTGYW 60

Query: 133 AAELTQ--HKVHSLDL----VAL-------NERVTSCDMTRTPLKPYSVDVAVFCLSLM- 178
              L+    +V +LD     +A        N      D+          D   F   L  
Sbjct: 61  TRHLSGLADRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTP-DRQWDAVFFAHWLAH 119

Query: 179 --GTDLAACIKEANRILK 194
                  A  +     + 
Sbjct: 120 VPDDRFEAFWESVRSAVA 137

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267

 Score = 39.9 bits (93), Expect = 2e-04
 Identities = 27/154 (17%), Positives = 55/154 (35%), Gaps = 37/154 (24%)

Query: 68  TSKSEESKDFFTEDRESFEAYHEGFKKQ------VTQWPINPVDIIIKSIQERESKGRLV 121
           +++++   DF   +      +    ++Q      VT   ++ +D +           + +
Sbjct: 2   SNENKTIHDF---ELNLICDFFSNMERQGPGSPEVTLKALSFIDNL---------TEKSL 49

Query: 122 IADLGCG---EAKLAAELTQHKVHSLDLVA--------------LNERVT--SCDMTRTP 162
           IAD+GCG   +  + A     +V  LD ++              L  RVT     M   P
Sbjct: 50  IADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLP 109

Query: 163 LKPYSVDVAVFCLSLMGTDLAACIKEANRILKLG 196
            +   +D+     ++        + E  + LK G
Sbjct: 110 FRNEELDLIWSEGAIYNIGFERGLNEWRKYLKKG 143

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263

 Score = 39.8 bits (93), Expect = 2e-04
 Identities = 23/145 (15%), Positives = 46/145 (31%), Gaps = 25/145 (17%)

Query: 68  TSKSEESKDFFTEDRESFEAYHEGFKKQVTQWPINPVDIIIKSIQERESKGRLVIADLGC 127
           ++ +    D+  E  E ++  H+G  K   +        +   ++    K   ++ D+ C
Sbjct: 5   SATAGPQADYSGEIAELYDLVHQGKGKDYHRE----AADLAALVRRHSPKAASLL-DVAC 59

Query: 128 GEAKLAAELTQ--HKVHSLDL----------VALNERVTSCDMTRTPLKPYSVDVAVFCL 175
           G       L      V  L+L             +  +   DM    L       AV C+
Sbjct: 60  GTGMHLRHLADSFGTVEGLELSADMLAIARRRNPDAVLHHGDMRDFSL-GRRFS-AVTCM 117

Query: 176 --SLM----GTDLAACIKEANRILK 194
             S+       +L A ++     + 
Sbjct: 118 FSSIGHLAGQAELDAALERFAAHVL 142

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209

 Score = 39.5 bits (92), Expect = 2e-04
 Identities = 15/93 (16%), Positives = 30/93 (32%), Gaps = 20/93 (21%)

Query: 124 DLGCGEAKLAAEL---TQHKVHSLDLVA--------------LNERVTSCDMTRTPLKPY 166
           D G G       +     +K + +++                    ++  D+ + P K  
Sbjct: 29  DCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDE 88

Query: 167 SVDVAVFCLSLM---GTDLAACIKEANRILKLG 196
           S+       ++      D+   I E  R+LK G
Sbjct: 89  SMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPG 121

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243

 Score = 38.9 bits (91), Expect = 4e-04
 Identities = 21/103 (20%), Positives = 35/103 (33%), Gaps = 20/103 (19%)

Query: 111 IQERESKGRLVIADLGCGEAKLAAELTQ-HKVHSLDL------VA--------LNERVTS 155
           + E+   G+ +  D+GCG       L   ++V  +DL      +A         +     
Sbjct: 27  VLEQVEPGKRIA-DIGCGTGTATLLLADHYEVTGVDLSEEMLEIAQEKAMETNRHVDFWV 85

Query: 156 CDMTRTPLKPYSVDVAVFCLSLM----GTDLAACIKEANRILK 194
            DM    L      + + C SL       D+      A R+L 
Sbjct: 86  QDMRELELPEPVDAITILCDSLNYLQTEADVKQTFDSAARLLT 128

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245

 Score = 38.9 bits (90), Expect = 5e-04
 Identities = 22/153 (14%), Positives = 38/153 (24%), Gaps = 26/153 (16%)

Query: 68  TSKSEESKDFFTEDRESFEAYHEGFKKQVTQ--WPINPVDIIIKSIQERES--KGRLVIA 123
             K    K       +++E Y        T   W  N    ++  +   E      L + 
Sbjct: 2   MEKLSAIKKPDINVADAWEQYWNKTLVNSTPVLWDANVERAVVVDLPRFELLFNPELPLI 61

Query: 124 DLGCGEAKLAAELTQH--KVHSLDL------------VALNERVTSCDMTR----TPLKP 165
           D  CG       L+Q   +V  LD+             A N      D         +  
Sbjct: 62  DFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHS 121

Query: 166 YSVDVAVFCLSLM----GTDLAACIKEANRILK 194
              D  ++  +              +    +L 
Sbjct: 122 EIGDANIYMRTGFHHIPVEKRELLGQSLRILLG 154

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252

 Score = 38.7 bits (90), Expect = 5e-04
 Identities = 27/143 (18%), Positives = 45/143 (31%), Gaps = 27/143 (18%)

Query: 75  KDFFTEDRESFEAYHEGFKKQVTQWPINPVDIIIKSIQERESKGRLVIADLGCGEAKLAA 134
            + +T   E ++  +    ++V       +D + +  +E   +    + DL CG      
Sbjct: 2   YELYTLLAEYYDTIYRRRIERVKAE----IDFVEEIFKEDAKREVRRVLDLACGTGIPTL 57

Query: 135 ELTQ--HKVHSLDL------VA--------LNERVTSCDMTRTPLKPYSVDVAVFCLS-- 176
           EL +  ++V  LDL      VA        L       D+          D AV      
Sbjct: 58  ELAERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAF-KNEFD-AVTMFFST 115

Query: 177 ---LMGTDLAACIKEANRILKLG 196
                  DL     +    LK G
Sbjct: 116 IMYFDEEDLRKLFSKVAEALKPG 138

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239

 Score = 38.2 bits (89), Expect = 8e-04
 Identities = 17/109 (15%), Positives = 32/109 (29%), Gaps = 21/109 (19%)

Query: 104 VDIIIKSIQERESKGRLVIADLGCGEAKLAAELTQ--HKVHSLDL----------VALNE 151
              I   ++ R  +   ++ D+ CG        T+       L+L             + 
Sbjct: 27  ASDIADLVRSRTPEASSLL-DVACGTGTHLEHFTKEFGDTAGLELSEDMLTHARKRLPDA 85

Query: 152 RVTSCDMTRTPLKPYSVDVAVFCL--SLM----GTDLAACIKEANRILK 194
            +   DM    L       AV  +  S+       +L A +      L+
Sbjct: 86  TLHQGDMRDFRL-GRKFS-AVVSMFSSVGYLKTTEELGAAVASFAEHLE 132

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	196
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.91
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.8
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.69
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.64
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.64
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.64
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.64
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.64
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.63
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.63
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.63
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.62
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.62
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.61
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.6
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.6
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.6
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.59
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.59
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.59
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.58
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.58
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.57
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.57
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.57
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.57
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.57
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.57
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.56
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.56
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.56
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.56
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.56
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.56
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.56
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.55
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.54
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.53
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.53
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.52
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.52
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.52
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.51
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.51
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.51
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.5
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.5
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.5
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.5
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.49
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.49
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.49
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.48
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.48
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.48
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.48
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.48
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.47
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.47
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.47
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.46
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.46
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.46
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.46
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.46
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.45
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.45
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.44
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.44
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.44
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.43
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.43
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.43
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.42
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.42
3ocj_A	305	Putative exported protein; structural genomics, PS	99.42
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.41
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.41
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.4
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.39
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.39
3sso_A	419	Methyltransferase; macrolide, natural product, ros	99.39
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.39
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.38
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.37
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.36
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.36
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.35
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.35
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.35
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.34
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.34
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.33
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.33
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.33
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	99.32
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.32
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.32
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.32
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.32
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.31
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	99.31
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.31
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.31
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.31
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.31
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.3
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.3
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.3
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.3
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.29
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.29
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.29
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.29
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.29
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.29
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.29
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.28
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.28
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.28
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.28
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.27
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.27
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.26
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.26
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.25
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.24
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.24
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.24
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.23
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.23
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.22
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.22
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.22
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.21
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.2
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.2
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.2
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.2
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.2
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.2
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.2
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.19
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.18
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.18
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.17
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.16
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.16
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.16
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	99.16
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.15
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.15
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.15
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.15
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.14
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.14
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	99.13
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.13
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.12
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.12
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.12
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.11
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.11
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.1
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.1
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.1
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.1
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.1
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.1
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.09
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.09
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.09
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.09
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.09
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.08
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.08
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.08
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.08
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.08
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.06
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.06
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.06
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.05
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.05
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.05
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.04
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.04
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.04
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.04
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.03
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.0
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	98.99
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	98.98
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	98.97
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	98.97
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	98.97
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	98.97
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	98.96
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	98.96
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	98.95
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	98.94
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	98.94
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	98.94
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	98.93
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	98.93
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	98.92
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	98.91
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	98.9
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	98.9
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	98.9
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	98.89
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	98.89
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	98.88
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	98.88
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.88
2o07_A	304	Spermidine synthase; structural genomics, structur	98.88
2qm3_A	373	Predicted methyltransferase; putative methyltransf	98.87
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	98.86
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	98.86
2i7c_A	283	Spermidine synthase; transferase, structural genom	98.86
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	98.85
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	98.85
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	98.84
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	98.84
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	98.83
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	98.82
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	98.82
2pt6_A	321	Spermidine synthase; transferase, structural genom	98.82
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	98.81
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	98.77
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	98.76
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	98.72
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	98.7
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	98.69
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.69
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	98.67
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	98.67
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	98.66
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	98.65
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	98.65
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	98.64
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	98.63
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	98.62
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	98.6
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.6
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	98.58
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	98.58
3k6r_A	278	Putative transferase PH0793; structural genomics,	98.58
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	98.56
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	98.56
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	98.54
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.52
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	98.48
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	98.48
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	98.47
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	98.46
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.44
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	98.43
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.43
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	98.43
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	98.39
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.37
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	98.34
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	98.32
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	98.31
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.3
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.29
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	98.29
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	98.23
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.21
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	98.2
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	98.13
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	98.07
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	98.03
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	98.01
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	97.93
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	97.89
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	97.89
3ll7_A	410	Putative methyltransferase; methytransferase, stru	97.89
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	97.82
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	97.77
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	97.75
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	97.73
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	97.64
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	97.59
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	97.56
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	97.49
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	97.35
3khk_A	544	Type I restriction-modification system methylation	97.3
3lkd_A	542	Type I restriction-modification system methyltrans	97.23
2zig_A	297	TTHA0409, putative modification methylase; methylt	96.88
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	96.82
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	96.76
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	96.66
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	96.54
3cvo_A	202	Methyltransferase-like protein of unknown functio;	96.4
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	95.83
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	95.51
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	95.5
3ufb_A	530	Type I restriction-modification system methyltran	95.39
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	95.08
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	93.7
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	92.74
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	92.42
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	91.08
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	88.01
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	87.35
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	85.98
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	85.93
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	85.11
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	84.55
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	84.06
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	84.03
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	82.52
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	82.34
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	81.54
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	80.76

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.91  E-value=6.2e-24  Score=167.53  Aligned_cols=144  Identities=51%  Similarity=0.959  Sum_probs=130.9

Q ss_pred             HHhHhccCCccchhhhccCCChHHHHHHhhhCHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHhhcCCCCCEEEEEcCCC
Q psy10644         50 LLNKLKSARFRYLNEQLYTSKSEESKDFFTEDRESFEAYHEGFKKQVTQWPINPVDIIIKSIQERESKGRLVIADLGCGE  129 (196)
Q Consensus        50 ~~~~~~~~~fr~~ne~~y~~~~~~~~~~~~~~~~~f~~y~~~y~~~~~~w~~~~~~~~~~~l~~~~~~~~~~ILDlGCG~  129 (196)
                      |+.++.+++||++|+++|+.......++|...++.|+.|...|......|+......+++.+....  ++.+|||||||+
T Consensus         1 m~~~~~~~~fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~vLDiG~G~   78 (215)
T 2zfu_A            1 MAQRLDGARFRYLNEQLYSGPSSAAQRLFQEDPEAFLLYHRGFQSQVKKWPLQPVDRIARDLRQRP--ASLVVADFGCGD   78 (215)
T ss_dssp             -CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHCHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHTSC--TTSCEEEETCTT
T ss_pred             ChhHHHHHHHHHhcccccchHHHHHHHHHHHhHHHHHHHHHHHHhhhcccchhHHHHHHHHHhccC--CCCeEEEECCcC
Confidence            456778899999999999999999999999999999999999998888899998888888886543  367999999999


Q ss_pred             chhHhhccCCeEEEEeCCCCCceEEEecCCCCCCCCCceeeEeecccccccCHHHHHHHHHHhccCC
Q psy10644        130 AKLAAELTQHKVHSLDLVALNERVTSCDMTRTPLKPYSVDVAVFCLSLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       130 G~~a~~l~~~~v~giDls~~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~~d~~~~l~e~~rvLkpg  196 (196)
                      |.++..+ ..+|+|+|+++.++.++.+|+..+++++++||+|++..++|+.++..++++++++||||
T Consensus        79 G~~~~~l-~~~v~~~D~s~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~~g  144 (215)
T 2zfu_A           79 CRLASSI-RNPVHCFDLASLDPRVTVCDMAQVPLEDESVDVAVFCLSLMGTNIRDFLEEANRVLKPG  144 (215)
T ss_dssp             CHHHHHC-CSCEEEEESSCSSTTEEESCTTSCSCCTTCEEEEEEESCCCSSCHHHHHHHHHHHEEEE
T ss_pred             CHHHHHh-hccEEEEeCCCCCceEEEeccccCCCCCCCEeEEEEehhccccCHHHHHHHHHHhCCCC
Confidence            9999998 57999999999999999999999999999999999999998789999999999999986

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.80  E-value=4.9e-20  Score=150.55  Aligned_cols=91  Identities=25%  Similarity=0.293  Sum_probs=79.4

Q ss_pred             HHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC---------CCceEEEecCCCCCCCCCceeeEee
Q psy10644        105 DIIIKSIQERESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA---------LNERVTSCDMTRTPLKPYSVDVAVF  173 (196)
Q Consensus       105 ~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~---------~~~~~~~~d~~~lp~~~~sfD~Vi~  173 (196)
                      ..+++.|....+ .+.+|||||||+|.++..|  .+.+|+|+|+|+         .++.+.++|++++|+++++||+|++
T Consensus        27 ~~l~~~l~~~~~-~~~~vLDvGcGtG~~~~~l~~~~~~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~  105 (257)
T 4hg2_A           27 RALFRWLGEVAP-ARGDALDCGCGSGQASLGLAEFFERVHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIA  105 (257)
T ss_dssp             HHHHHHHHHHSS-CSSEEEEESCTTTTTHHHHHTTCSEEEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEE
T ss_pred             HHHHHHHHHhcC-CCCCEEEEcCCCCHHHHHHHHhCCEEEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEE
Confidence            345555555443 3579999999999999999  456999999998         5889999999999999999999999


Q ss_pred             cccccccCHHHHHHHHHHhccCC
Q psy10644        174 CLSLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       174 ~~~lh~~d~~~~l~e~~rvLkpg  196 (196)
                      +.++|+.++..+++|++|+||||
T Consensus       106 ~~~~h~~~~~~~~~e~~rvLkpg  128 (257)
T 4hg2_A          106 AQAMHWFDLDRFWAELRRVARPG  128 (257)
T ss_dssp             CSCCTTCCHHHHHHHHHHHEEEE
T ss_pred             eeehhHhhHHHHHHHHHHHcCCC
Confidence            99999999999999999999997

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.69  E-value=1.3e-16  Score=129.04  Aligned_cols=104  Identities=17%  Similarity=0.222  Sum_probs=78.7

Q ss_pred             HHHHhhhhcCCCChHHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC---------------CCce
Q psy10644         90 EGFKKQVTQWPINPVDIIIKSIQERESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA---------------LNER  152 (196)
Q Consensus        90 ~~y~~~~~~w~~~~~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~---------------~~~~  152 (196)
                      .+|......++...+..+++.+.   ..++.+|||||||+|.++..+  ...+|+|+|+|+               .++.
T Consensus        12 ~~~~~s~~~~~~~~~~~l~~~l~---~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~   88 (260)
T 1vl5_A           12 HMYVTSQIHAKGSDLAKLMQIAA---LKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVE   88 (260)
T ss_dssp             -----------CCCHHHHHHHHT---CCSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCCSEE
T ss_pred             eeeecCccccCHHHHHHHHHHhC---CCCCCEEEEEeCCCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCceE
Confidence            44444333444555677777663   334789999999999998888  345999999998               3588


Q ss_pred             EEEecCCCCCCCCCceeeEeecccccc-cCHHHHHHHHHHhccCC
Q psy10644        153 VTSCDMTRTPLKPYSVDVAVFCLSLMG-TDLAACIKEANRILKLG  196 (196)
Q Consensus       153 ~~~~d~~~lp~~~~sfD~Vi~~~~lh~-~d~~~~l~e~~rvLkpg  196 (196)
                      +.++|++.+|+++++||+|++..++|+ .|+..+|++++|+||||
T Consensus        89 ~~~~d~~~l~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~Lkpg  133 (260)
T 1vl5_A           89 YVQGDAEQMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKG  133 (260)
T ss_dssp             EEECCC-CCCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE
T ss_pred             EEEecHHhCCCCCCCEEEEEEhhhhHhcCCHHHHHHHHHHHcCCC
Confidence            999999999999999999999999965 49999999999999996

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.64  E-value=7.2e-16  Score=125.97  Aligned_cols=82  Identities=18%  Similarity=0.233  Sum_probs=68.4

Q ss_pred             hhcCCCCCEEEEEcCCCchhHhhc------cCCeEEEEeCCC----------------CCceEEEecCCCCCCCCCceee
Q psy10644        113 ERESKGRLVIADLGCGEAKLAAEL------TQHKVHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDV  170 (196)
Q Consensus       113 ~~~~~~~~~ILDlGCG~G~~a~~l------~~~~v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~  170 (196)
                      ....+++.+|||||||+|.++..|      .+++|+|+|+|+                .++.++++|+.++|++  .||+
T Consensus        65 ~~~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~--~~d~  142 (261)
T 4gek_A           65 ERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASM  142 (261)
T ss_dssp             HHHCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCC--SEEE
T ss_pred             HHhCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccccccccc--cccc
Confidence            333456889999999999887766      356999999998                3688999999998874  5999


Q ss_pred             Eeeccccccc---CHHHHHHHHHHhccCC
Q psy10644        171 AVFCLSLMGT---DLAACIKEANRILKLG  196 (196)
Q Consensus       171 Vi~~~~lh~~---d~~~~l~e~~rvLkpg  196 (196)
                      |++.++||+.   +...+|++++|+||||
T Consensus       143 v~~~~~l~~~~~~~~~~~l~~i~~~LkpG  171 (261)
T 4gek_A          143 VVLNFTLQFLEPSERQALLDKIYQGLNPG  171 (261)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred             ceeeeeeeecCchhHhHHHHHHHHHcCCC
Confidence            9999999765   4567999999999997

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.64  E-value=9.6e-16  Score=119.92  Aligned_cols=91  Identities=18%  Similarity=0.163  Sum_probs=76.5

Q ss_pred             hHHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC-----------CCceEEEecCCCCCCCCCcee
Q psy10644        103 PVDIIIKSIQERESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA-----------LNERVTSCDMTRTPLKPYSVD  169 (196)
Q Consensus       103 ~~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~-----------~~~~~~~~d~~~lp~~~~sfD  169 (196)
                      ....+++.+....+  +.+|||||||+|.++..+  .+.+|+|+|+++           .++.++.+|+..+ +++++||
T Consensus        33 ~~~~~~~~l~~~~~--~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~-~~~~~~D  109 (218)
T 3ou2_A           33 AAPAALERLRAGNI--RGDVLELASGTGYWTRHLSGLADRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDW-TPDRQWD  109 (218)
T ss_dssp             THHHHHHHHTTTTS--CSEEEEESCTTSHHHHHHHHHSSEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSC-CCSSCEE
T ss_pred             HHHHHHHHHhcCCC--CCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHhcCCCCeEEEecccccC-CCCCcee
Confidence            35666777654443  679999999999999888  567999999998           4789999999887 7889999


Q ss_pred             eEeeccccccc-C--HHHHHHHHHHhccCC
Q psy10644        170 VAVFCLSLMGT-D--LAACIKEANRILKLG  196 (196)
Q Consensus       170 ~Vi~~~~lh~~-d--~~~~l~e~~rvLkpg  196 (196)
                      +|++..++|+. +  ...+|++++++||||
T Consensus       110 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~pg  139 (218)
T 3ou2_A          110 AVFFAHWLAHVPDDRFEAFWESVRSAVAPG  139 (218)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred             EEEEechhhcCCHHHHHHHHHHHHHHcCCC
Confidence            99999999655 4  389999999999986

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.64  E-value=8.1e-16  Score=124.77  Aligned_cols=81  Identities=21%  Similarity=0.213  Sum_probs=72.4

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC---------CCceEEEecCCCCCCCCCceeeEeecccccc-cCH
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA---------LNERVTSCDMTRTPLKPYSVDVAVFCLSLMG-TDL  182 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~---------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~-~d~  182 (196)
                      ...++.+|||||||+|.++..+  .+.+|+|+|+|+         .++.++++|++.+|+++++||+|++..++|+ .++
T Consensus        31 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~  110 (261)
T 3ege_A           31 NLPKGSVIADIGAGTGGYSVALANQGLFVYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVISILAIHHFSHL  110 (261)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHTTTCEEEEECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSEEEEESCGGGCSSH
T ss_pred             CCCCCCEEEEEcCcccHHHHHHHhCCCEEEEEeCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeEEEEcchHhhccCH
Confidence            3345789999999999999988  567999999998         3789999999999999999999999999955 599


Q ss_pred             HHHHHHHHHhccCC
Q psy10644        183 AACIKEANRILKLG  196 (196)
Q Consensus       183 ~~~l~e~~rvLkpg  196 (196)
                      ..++++++|+|| |
T Consensus       111 ~~~l~~~~~~Lk-g  123 (261)
T 3ege_A          111 EKSFQEMQRIIR-D  123 (261)
T ss_dssp             HHHHHHHHHHBC-S
T ss_pred             HHHHHHHHHHhC-C
Confidence            999999999999 6

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.64  E-value=1.4e-15  Score=122.44  Aligned_cols=111  Identities=22%  Similarity=0.235  Sum_probs=84.3

Q ss_pred             HHHHHHHHHhhhhcCCCChHHHHHHHHHh--hcCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC------------
Q psy10644         85 FEAYHEGFKKQVTQWPINPVDIIIKSIQE--RESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA------------  148 (196)
Q Consensus        85 f~~y~~~y~~~~~~w~~~~~~~~~~~l~~--~~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~------------  148 (196)
                      |+.....|.... ..+......+++.+..  ....++.+|||||||+|.++..+  .+.+|+|+|+|+            
T Consensus         5 ~~~~a~~y~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~   83 (263)
T 2yqz_A            5 LLRAAYAYDRLR-AHPPEVAGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKIAG   83 (263)
T ss_dssp             HHHHHHHHHHHH-CCCHHHHHHHHHHHHHHCCCSSSCCEEEEETCTTSTTHHHHHTTTCEEEEEESCHHHHHHHHHHTTT
T ss_pred             hHHHHHHHhhhc-ccChHHHHHHHHHHHHhhcCCCCCCEEEEeCCcCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhc
Confidence            444444444332 1222234455555532  12345789999999999998888  456999999997            


Q ss_pred             --CCceEEEecCCCCCCCCCceeeEeeccccccc-CHHHHHHHHHHhccCC
Q psy10644        149 --LNERVTSCDMTRTPLKPYSVDVAVFCLSLMGT-DLAACIKEANRILKLG  196 (196)
Q Consensus       149 --~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~~-d~~~~l~e~~rvLkpg  196 (196)
                        .++.+..+|++.+++++++||+|++..++|+. ++..++++++|+||||
T Consensus        84 ~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pg  134 (263)
T 2yqz_A           84 VDRKVQVVQADARAIPLPDESVHGVIVVHLWHLVPDWPKVLAEAIRVLKPG  134 (263)
T ss_dssp             SCTTEEEEESCTTSCCSCTTCEEEEEEESCGGGCTTHHHHHHHHHHHEEEE
T ss_pred             cCCceEEEEcccccCCCCCCCeeEEEECCchhhcCCHHHHHHHHHHHCCCC
Confidence              36889999999999999999999999999766 9999999999999986

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.64  E-value=1.6e-15  Score=118.45  Aligned_cols=93  Identities=26%  Similarity=0.319  Sum_probs=75.3

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc---cCCeEEEEeCCC----------------CCceEEEecCCCCCCC
Q psy10644        104 VDIIIKSIQERESKGRLVIADLGCGEAKLAAEL---TQHKVHSLDLVA----------------LNERVTSCDMTRTPLK  164 (196)
Q Consensus       104 ~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l---~~~~v~giDls~----------------~~~~~~~~d~~~lp~~  164 (196)
                      ...+.+.+......+..+|||||||+|.++..+   .+.+|+|+|+++                .++.++.+|+..++++
T Consensus        29 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~  108 (219)
T 3dlc_A           29 YPIIAENIINRFGITAGTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIE  108 (219)
T ss_dssp             HHHHHHHHHHHHCCCEEEEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSC
T ss_pred             cHHHHHHHHHhcCCCCCEEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCC
Confidence            444444443322222339999999999998888   356999999997                2689999999999999


Q ss_pred             CCceeeEeeccccccc-CHHHHHHHHHHhccCC
Q psy10644        165 PYSVDVAVFCLSLMGT-DLAACIKEANRILKLG  196 (196)
Q Consensus       165 ~~sfD~Vi~~~~lh~~-d~~~~l~e~~rvLkpg  196 (196)
                      +++||+|++..++|+. ++..++++++|+||||
T Consensus       109 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pg  141 (219)
T 3dlc_A          109 DNYADLIVSRGSVFFWEDVATAFREIYRILKSG  141 (219)
T ss_dssp             TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE
T ss_pred             cccccEEEECchHhhccCHHHHHHHHHHhCCCC
Confidence            9999999999999654 9999999999999986

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.63  E-value=2.9e-16  Score=123.29  Aligned_cols=91  Identities=7%  Similarity=-0.050  Sum_probs=74.3

Q ss_pred             HHHHHHHhhcCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC----------C-----------------CceEEEe
Q psy10644        106 IIIKSIQERESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA----------L-----------------NERVTSC  156 (196)
Q Consensus       106 ~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~----------~-----------------~~~~~~~  156 (196)
                      .+.+++......++.+|||+|||+|..+..|  .+++|+|+|+|+          .                 ++.++++
T Consensus        10 ~l~~~~~~l~~~~~~~vLD~GCG~G~~~~~la~~g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   89 (203)
T 1pjz_A           10 DLQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCG   89 (203)
T ss_dssp             HHHHHHHHHCCCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEE
T ss_pred             HHHHHHHhcccCCCCEEEEeCCCCcHhHHHHHHCCCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEEC
Confidence            3445555444445789999999999999888  578999999997          1                 4689999


Q ss_pred             cCCCCCCCC-CceeeEeeccccccc---CHHHHHHHHHHhccCC
Q psy10644        157 DMTRTPLKP-YSVDVAVFCLSLMGT---DLAACIKEANRILKLG  196 (196)
Q Consensus       157 d~~~lp~~~-~sfD~Vi~~~~lh~~---d~~~~l~e~~rvLkpg  196 (196)
                      |+..+++++ ++||+|++..++|+.   +...++++++|+||||
T Consensus        90 d~~~l~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~Lkpg  133 (203)
T 1pjz_A           90 DFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQA  133 (203)
T ss_dssp             CCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSE
T ss_pred             ccccCCcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCC
Confidence            999998765 799999999888544   4567999999999997

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.63  E-value=4.6e-16  Score=123.93  Aligned_cols=90  Identities=21%  Similarity=0.282  Sum_probs=76.0

Q ss_pred             HHHHHHHhhcCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC------------CCceEEEecCCCCCCCCCceeeE
Q psy10644        106 IIIKSIQERESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA------------LNERVTSCDMTRTPLKPYSVDVA  171 (196)
Q Consensus       106 ~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~------------~~~~~~~~d~~~lp~~~~sfD~V  171 (196)
                      .+++.+.... .++.+|||||||+|.++..+  .+.+|+|+|+++            .++.++.+|+..+++++++||+|
T Consensus        42 ~~~~~l~~~~-~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v  120 (242)
T 3l8d_A           42 TIIPFFEQYV-KKEAEVLDVGCGDGYGTYKLSRTGYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAI  120 (242)
T ss_dssp             THHHHHHHHS-CTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEE
T ss_pred             HHHHHHHHHc-CCCCeEEEEcCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEE
Confidence            3444444332 24779999999999999888  567999999998            47899999999999999999999


Q ss_pred             eeccccc-ccCHHHHHHHHHHhccCC
Q psy10644        172 VFCLSLM-GTDLAACIKEANRILKLG  196 (196)
Q Consensus       172 i~~~~lh-~~d~~~~l~e~~rvLkpg  196 (196)
                      ++..++| ..++..++++++++||||
T Consensus       121 ~~~~~l~~~~~~~~~l~~~~~~L~pg  146 (242)
T 3l8d_A          121 MAINSLEWTEEPLRALNEIKRVLKSD  146 (242)
T ss_dssp             EEESCTTSSSCHHHHHHHHHHHEEEE
T ss_pred             EEcChHhhccCHHHHHHHHHHHhCCC
Confidence            9999995 459999999999999986

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.63  E-value=3e-15  Score=121.47  Aligned_cols=80  Identities=21%  Similarity=0.305  Sum_probs=71.9

Q ss_pred             CCCCEEEEEcCCCchhHhhc---cCCeEEEEeCCC----------------CCceEEEecCCCCCCCCCceeeEeecccc
Q psy10644        117 KGRLVIADLGCGEAKLAAEL---TQHKVHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAVFCLSL  177 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l---~~~~v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l  177 (196)
                      .++.+|||||||+|.++..+   .+.+|+|+|+|+                .++.++.+|+.++|+++++||+|++..++
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~~~  124 (267)
T 3kkz_A           45 TEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEGAI  124 (267)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEESSCG
T ss_pred             CCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEEEcCCc
Confidence            45789999999999999888   245999999998                24899999999999989999999999999


Q ss_pred             cccCHHHHHHHHHHhccCC
Q psy10644        178 MGTDLAACIKEANRILKLG  196 (196)
Q Consensus       178 h~~d~~~~l~e~~rvLkpg  196 (196)
                      |+.++..++++++++||||
T Consensus       125 ~~~~~~~~l~~~~~~Lkpg  143 (267)
T 3kkz_A          125 YNIGFERGLNEWRKYLKKG  143 (267)
T ss_dssp             GGTCHHHHHHHHGGGEEEE
T ss_pred             eecCHHHHHHHHHHHcCCC
Confidence            7669999999999999996

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.62  E-value=8.1e-16  Score=122.31  Aligned_cols=90  Identities=14%  Similarity=0.130  Sum_probs=74.8

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCCC-----------CceEEEecCCCCCCCCCceee
Q psy10644        104 VDIIIKSIQERESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVAL-----------NERVTSCDMTRTPLKPYSVDV  170 (196)
Q Consensus       104 ~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~~-----------~~~~~~~d~~~lp~~~~sfD~  170 (196)
                      ...+++.+.....  +.+|||||||+|.++..+  .+.+|+|+|+|+.           ++.++++|++.+ +++++||+
T Consensus        30 ~~~~~~~l~~~~~--~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~-~~~~~fD~  106 (250)
T 2p7i_A           30 HPFMVRAFTPFFR--PGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLKDGITYIHSRFEDA-QLPRRYDN  106 (250)
T ss_dssp             HHHHHHHHGGGCC--SSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSCSCEEEEESCGGGC-CCSSCEEE
T ss_pred             HHHHHHHHHhhcC--CCcEEEECCCCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHc-CcCCcccE
Confidence            3455566654433  678999999999999988  4458999999982           789999999887 56789999


Q ss_pred             Eeeccccccc-CHHHHHHHHH-HhccCC
Q psy10644        171 AVFCLSLMGT-DLAACIKEAN-RILKLG  196 (196)
Q Consensus       171 Vi~~~~lh~~-d~~~~l~e~~-rvLkpg  196 (196)
                      |++..+||+. ++..+|++++ |+||||
T Consensus       107 v~~~~~l~~~~~~~~~l~~~~~~~Lkpg  134 (250)
T 2p7i_A          107 IVLTHVLEHIDDPVALLKRINDDWLAEG  134 (250)
T ss_dssp             EEEESCGGGCSSHHHHHHHHHHTTEEEE
T ss_pred             EEEhhHHHhhcCHHHHHHHHHHHhcCCC
Confidence            9999999554 9999999999 999996

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.62  E-value=6.7e-16  Score=121.41  Aligned_cols=89  Identities=18%  Similarity=0.236  Sum_probs=74.7

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC----------C-CceEEEecCCCCCCCCCceee
Q psy10644        104 VDIIIKSIQERESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA----------L-NERVTSCDMTRTPLKPYSVDV  170 (196)
Q Consensus       104 ~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~----------~-~~~~~~~d~~~lp~~~~sfD~  170 (196)
                      +..+++.+..   .++.+|||||||+|.++..+  .+.+|+|+|+++          . ++.++.+|+..++++ ++||+
T Consensus        34 ~~~~l~~~~~---~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~-~~fD~  109 (220)
T 3hnr_A           34 YEDILEDVVN---KSFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVP-TSIDT  109 (220)
T ss_dssp             HHHHHHHHHH---TCCSEEEEECCTTSHHHHHHHHTTCEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCC-SCCSE
T ss_pred             HHHHHHHhhc---cCCCeEEEeCCCCCHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCC-CCeEE
Confidence            4555555543   34789999999999999888  467999999998          2 789999999999888 99999


Q ss_pred             Eeeccccccc-CHHH--HHHHHHHhccCC
Q psy10644        171 AVFCLSLMGT-DLAA--CIKEANRILKLG  196 (196)
Q Consensus       171 Vi~~~~lh~~-d~~~--~l~e~~rvLkpg  196 (196)
                      |++..++|+. +...  +|++++|+||||
T Consensus       110 v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg  138 (220)
T 3hnr_A          110 IVSTYAFHHLTDDEKNVAIAKYSQLLNKG  138 (220)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHHSCTT
T ss_pred             EEECcchhcCChHHHHHHHHHHHHhcCCC
Confidence            9999999655 6655  999999999997

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.61  E-value=1.6e-15  Score=125.29  Aligned_cols=91  Identities=18%  Similarity=0.181  Sum_probs=76.3

Q ss_pred             HHHHHHHhhcCCCCCEEEEEcCCCchhHhhcc-----CCeEEEEeCCC-----------------CCceEEEecCCCCCC
Q psy10644        106 IIIKSIQERESKGRLVIADLGCGEAKLAAELT-----QHKVHSLDLVA-----------------LNERVTSCDMTRTPL  163 (196)
Q Consensus       106 ~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l~-----~~~v~giDls~-----------------~~~~~~~~d~~~lp~  163 (196)
                      .+.+.|......++.+|||||||+|.++..+.     +.+|+|+|+|+                 .++.++++|++.+++
T Consensus        24 ~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~  103 (299)
T 3g5t_A           24 DFYKMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKF  103 (299)
T ss_dssp             HHHHHHHHHCCSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGG
T ss_pred             HHHHHHHHHhcCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCc
Confidence            34444544444458899999999999988773     45999999997                 278899999999988


Q ss_pred             CC------CceeeEeecccccccCHHHHHHHHHHhccCC
Q psy10644        164 KP------YSVDVAVFCLSLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       164 ~~------~sfD~Vi~~~~lh~~d~~~~l~e~~rvLkpg  196 (196)
                      ++      ++||+|++..++|+.++..++++++|+||||
T Consensus       104 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~l~~~~~~Lkpg  142 (299)
T 3g5t_A          104 LGADSVDKQKIDMITAVECAHWFDFEKFQRSAYANLRKD  142 (299)
T ss_dssp             GCTTTTTSSCEEEEEEESCGGGSCHHHHHHHHHHHEEEE
T ss_pred             cccccccCCCeeEEeHhhHHHHhCHHHHHHHHHHhcCCC
Confidence            77      8999999999997669999999999999996

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.60  E-value=5.4e-15  Score=118.82  Aligned_cols=80  Identities=20%  Similarity=0.290  Sum_probs=71.4

Q ss_pred             CCCCEEEEEcCCCchhHhhc---cCCeEEEEeCCC----------------CCceEEEecCCCCCCCCCceeeEeecccc
Q psy10644        117 KGRLVIADLGCGEAKLAAEL---TQHKVHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAVFCLSL  177 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l---~~~~v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l  177 (196)
                      .++.+|||||||+|.++..+   .+.+|+|+|+++                .++.++++|+..+|+++++||+|++..++
T Consensus        45 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l  124 (257)
T 3f4k_A           45 TDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEGAI  124 (257)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCEEEEEEESCS
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCEEEEEecChH
Confidence            34779999999999998888   234999999998                13889999999999999999999999999


Q ss_pred             cccCHHHHHHHHHHhccCC
Q psy10644        178 MGTDLAACIKEANRILKLG  196 (196)
Q Consensus       178 h~~d~~~~l~e~~rvLkpg  196 (196)
                      |+.++..++++++|+||||
T Consensus       125 ~~~~~~~~l~~~~~~L~pg  143 (257)
T 3f4k_A          125 YNIGFERGMNEWSKYLKKG  143 (257)
T ss_dssp             CCCCHHHHHHHHHTTEEEE
T ss_pred             hhcCHHHHHHHHHHHcCCC
Confidence            7779999999999999996

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.60  E-value=4.2e-16  Score=121.27  Aligned_cols=78  Identities=18%  Similarity=0.209  Sum_probs=70.7

Q ss_pred             CCEEEEEcCCCchhHhhc--cCCeEEEEeCCC----------CCceEEEecCCCCCCCCCceeeEeeccccc-cc--CHH
Q psy10644        119 RLVIADLGCGEAKLAAEL--TQHKVHSLDLVA----------LNERVTSCDMTRTPLKPYSVDVAVFCLSLM-GT--DLA  183 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l--~~~~v~giDls~----------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh-~~--d~~  183 (196)
                      +.+|||||||+|.++..+  .+.+|+|+|+++          .++.++++|+..+++++++||+|++..++| ..  ++.
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~  121 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGELP  121 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHTTCCEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTTHH
T ss_pred             CCeEEEecCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHHHH
Confidence            678999999999999888  466999999998          488999999999999899999999999995 43  899


Q ss_pred             HHHHHHHHhccCC
Q psy10644        184 ACIKEANRILKLG  196 (196)
Q Consensus       184 ~~l~e~~rvLkpg  196 (196)
                      .++++++++||||
T Consensus       122 ~~l~~~~~~L~pg  134 (203)
T 3h2b_A          122 DALVALRMAVEDG  134 (203)
T ss_dssp             HHHHHHHHTEEEE
T ss_pred             HHHHHHHHHcCCC
Confidence            9999999999986

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.60  E-value=6.1e-15  Score=118.00  Aligned_cols=82  Identities=20%  Similarity=0.273  Sum_probs=72.8

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC---------------CCceEEEecCCCCCCCCCceeeEeecccc
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDVAVFCLSL  177 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l  177 (196)
                      ...++.+|||||||+|.++..+  ...+|+|+|+++               .++.++.+|++.+|+++++||+|++..++
T Consensus        18 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l   97 (239)
T 1xxl_A           18 ECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITCRYAA   97 (239)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEEEEEESCG
T ss_pred             CcCCCCEEEEEccCcCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCcEEEEEECCch
Confidence            4456889999999999998888  456999999997               36889999999999999999999999999


Q ss_pred             c-ccCHHHHHHHHHHhccCC
Q psy10644        178 M-GTDLAACIKEANRILKLG  196 (196)
Q Consensus       178 h-~~d~~~~l~e~~rvLkpg  196 (196)
                      | ..++..++++++|+||||
T Consensus        98 ~~~~~~~~~l~~~~~~Lkpg  117 (239)
T 1xxl_A           98 HHFSDVRKAVREVARVLKQD  117 (239)
T ss_dssp             GGCSCHHHHHHHHHHHEEEE
T ss_pred             hhccCHHHHHHHHHHHcCCC
Confidence            5 459999999999999986

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.59  E-value=6.3e-15  Score=118.60  Aligned_cols=87  Identities=11%  Similarity=0.117  Sum_probs=74.8

Q ss_pred             HHHhhcCCCCCEEEEEcCCCchhHhhc---cCCeEEEEeCCC-------------CCceEEEecCCCCCCCCCceeeEee
Q psy10644        110 SIQERESKGRLVIADLGCGEAKLAAEL---TQHKVHSLDLVA-------------LNERVTSCDMTRTPLKPYSVDVAVF  173 (196)
Q Consensus       110 ~l~~~~~~~~~~ILDlGCG~G~~a~~l---~~~~v~giDls~-------------~~~~~~~~d~~~lp~~~~sfD~Vi~  173 (196)
                      .+......++.+|||||||+|.++..+   .+.+|+|+|+|+             .++.++.+|+..+|+++++||+|++
T Consensus        47 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~  126 (266)
T 3ujc_A           47 ILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNFDLIYS  126 (266)
T ss_dssp             HTTTCCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCEEEEEE
T ss_pred             HHHhcCCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcEEEEeH
Confidence            333344456789999999999998888   267999999998             3688999999999999999999999


Q ss_pred             ccccc-c--cCHHHHHHHHHHhccCC
Q psy10644        174 CLSLM-G--TDLAACIKEANRILKLG  196 (196)
Q Consensus       174 ~~~lh-~--~d~~~~l~e~~rvLkpg  196 (196)
                      ..++| .  .++..+|++++|+||||
T Consensus       127 ~~~l~~~~~~~~~~~l~~~~~~L~pg  152 (266)
T 3ujc_A          127 RDAILALSLENKNKLFQKCYKWLKPT  152 (266)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred             HHHHHhcChHHHHHHHHHHHHHcCCC
Confidence            99995 4  48999999999999996

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.59  E-value=1.1e-15  Score=119.47  Aligned_cols=78  Identities=18%  Similarity=0.185  Sum_probs=71.5

Q ss_pred             CCCEEEEEcCCCchhHhhccCC-eEEEEeCCC----------CCceEEEecCCCCCCCCCceeeEeeccccccc-CHHHH
Q psy10644        118 GRLVIADLGCGEAKLAAELTQH-KVHSLDLVA----------LNERVTSCDMTRTPLKPYSVDVAVFCLSLMGT-DLAAC  185 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l~~~-~v~giDls~----------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~~-d~~~~  185 (196)
                      ++.+|||||||+|.++..+ +. +|+|+|+++          .++.++.+|+..+|+++++||+|++..++|+. ++..+
T Consensus        36 ~~~~vLdiG~G~G~~~~~l-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~  114 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL-PYPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEFVEDVERV  114 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC-CCSEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEESCTTTCSCHHHH
T ss_pred             CCCeEEEECCCCCHhHHhC-CCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcChhhhcCCHHHH
Confidence            5789999999999999998 77 999999998          37899999999999999999999999999654 99999


Q ss_pred             HHHHHHhccCC
Q psy10644        186 IKEANRILKLG  196 (196)
Q Consensus       186 l~e~~rvLkpg  196 (196)
                      +++++|+||||
T Consensus       115 l~~~~~~L~pg  125 (211)
T 2gs9_A          115 LLEARRVLRPG  125 (211)
T ss_dssp             HHHHHHHEEEE
T ss_pred             HHHHHHHcCCC
Confidence            99999999986

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.59  E-value=2.4e-15  Score=120.85  Aligned_cols=80  Identities=20%  Similarity=0.174  Sum_probs=71.6

Q ss_pred             CCCCEEEEEcCCCchhHhhc--cCC-eEEEEeCCC------------CCceEEEecCCCCCCCCCceeeEeeccccccc-
Q psy10644        117 KGRLVIADLGCGEAKLAAEL--TQH-KVHSLDLVA------------LNERVTSCDMTRTPLKPYSVDVAVFCLSLMGT-  180 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l--~~~-~v~giDls~------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~~-  180 (196)
                      .++.+|||||||+|.++..+  .+. +|+|+|+++            .++.++.+|+..+++++++||+|++..++|+. 
T Consensus        43 ~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~  122 (253)
T 3g5l_A           43 FNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLALHYIA  122 (253)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEEEEEESCGGGCS
T ss_pred             cCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEEEEEchhhhhhh
Confidence            35789999999999998888  344 999999998            47899999999999989999999999999655 


Q ss_pred             CHHHHHHHHHHhccCC
Q psy10644        181 DLAACIKEANRILKLG  196 (196)
Q Consensus       181 d~~~~l~e~~rvLkpg  196 (196)
                      ++..+|++++|+||||
T Consensus       123 ~~~~~l~~~~~~Lkpg  138 (253)
T 3g5l_A          123 SFDDICKKVYINLKSS  138 (253)
T ss_dssp             CHHHHHHHHHHHEEEE
T ss_pred             hHHHHHHHHHHHcCCC
Confidence            9999999999999986

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.58  E-value=2.8e-15  Score=122.75  Aligned_cols=79  Identities=25%  Similarity=0.327  Sum_probs=70.3

Q ss_pred             CCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC----------------CCceEEEecCCCCC-CCCCceeeEeeccccc
Q psy10644        118 GRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA----------------LNERVTSCDMTRTP-LKPYSVDVAVFCLSLM  178 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~----------------~~~~~~~~d~~~lp-~~~~sfD~Vi~~~~lh  178 (196)
                      ++.+|||||||+|.++..+  .+.+|+|+|+++                .++.++.+|+..++ +++++||+|++..++|
T Consensus        68 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l~  147 (285)
T 4htf_A           68 QKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAVLE  147 (285)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESCGG
T ss_pred             CCCEEEEeCCcchHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECchhh
Confidence            3679999999999999888  567999999998                35789999998887 7889999999999995


Q ss_pred             -ccCHHHHHHHHHHhccCC
Q psy10644        179 -GTDLAACIKEANRILKLG  196 (196)
Q Consensus       179 -~~d~~~~l~e~~rvLkpg  196 (196)
                       ..++..+|++++++||||
T Consensus       148 ~~~~~~~~l~~~~~~Lkpg  166 (285)
T 4htf_A          148 WVADPRSVLQTLWSVLRPG  166 (285)
T ss_dssp             GCSCHHHHHHHHHHTEEEE
T ss_pred             cccCHHHHHHHHHHHcCCC
Confidence             459999999999999996

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.58  E-value=8.6e-15  Score=116.19  Aligned_cols=79  Identities=25%  Similarity=0.283  Sum_probs=68.3

Q ss_pred             CCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC-------------CCceEEEecCCCCCCCCCceeeEeecccccc
Q psy10644        117 KGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA-------------LNERVTSCDMTRTPLKPYSVDVAVFCLSLMG  179 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~-------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~  179 (196)
                      .++.+|||||||+|.++..+    ++.+|+|+|+++             .++.++.+|+..++++ ++||+|++..++|+
T Consensus        43 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~l~~  121 (234)
T 3dtn_A           43 TENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFE-EKYDMVVSALSIHH  121 (234)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCC-SCEEEEEEESCGGG
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCC-CCceEEEEeCcccc
Confidence            34789999999999998887    367999999998             2788999999998887 89999999999965


Q ss_pred             c-CHH--HHHHHHHHhccCC
Q psy10644        180 T-DLA--ACIKEANRILKLG  196 (196)
Q Consensus       180 ~-d~~--~~l~e~~rvLkpg  196 (196)
                      . +..  .++++++|+||||
T Consensus       122 ~~~~~~~~~l~~~~~~Lkpg  141 (234)
T 3dtn_A          122 LEDEDKKELYKRSYSILKES  141 (234)
T ss_dssp             SCHHHHHHHHHHHHHHEEEE
T ss_pred             CCHHHHHHHHHHHHHhcCCC
Confidence            5 333  5999999999996

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.57  E-value=1.1e-14  Score=119.84  Aligned_cols=80  Identities=21%  Similarity=0.177  Sum_probs=71.7

Q ss_pred             CCCCEEEEEcCCCchhHhhc---cCCeEEEEeCCC----------------CCceEEEecCCCCCCCCCceeeEeecccc
Q psy10644        117 KGRLVIADLGCGEAKLAAEL---TQHKVHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAVFCLSL  177 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l---~~~~v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l  177 (196)
                      .++.+|||||||+|.++..+   .+.+|+|+|+++                .++.++.+|+..+|+++++||+|++..++
T Consensus        81 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l  160 (297)
T 2o57_A           81 QRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDAF  160 (297)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESCG
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEEEecchh
Confidence            45789999999999998888   267999999998                25899999999999999999999999999


Q ss_pred             c-ccCHHHHHHHHHHhccCC
Q psy10644        178 M-GTDLAACIKEANRILKLG  196 (196)
Q Consensus       178 h-~~d~~~~l~e~~rvLkpg  196 (196)
                      | ..++..+|++++|+||||
T Consensus       161 ~~~~~~~~~l~~~~~~Lkpg  180 (297)
T 2o57_A          161 LHSPDKLKVFQECARVLKPR  180 (297)
T ss_dssp             GGCSCHHHHHHHHHHHEEEE
T ss_pred             hhcCCHHHHHHHHHHHcCCC
Confidence            5 559999999999999996

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.57  E-value=6.1e-15  Score=120.48  Aligned_cols=89  Identities=20%  Similarity=0.257  Sum_probs=75.4

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC----------CCceEEEecCCCCCCCCCceeeE
Q psy10644        104 VDIIIKSIQERESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA----------LNERVTSCDMTRTPLKPYSVDVA  171 (196)
Q Consensus       104 ~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~----------~~~~~~~~d~~~lp~~~~sfD~V  171 (196)
                      ...+++.+   ...++.+|||||||+|.++..+  .+.+|+|+|+|+          .++.+.++|++.+|+ +++||+|
T Consensus        46 ~~~l~~~l---~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~fD~v  121 (279)
T 3ccf_A           46 GEDLLQLL---NPQPGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNYPHLHFDVADARNFRV-DKPLDAV  121 (279)
T ss_dssp             CCHHHHHH---CCCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCC-SSCEEEE
T ss_pred             HHHHHHHh---CCCCCCEEEEecCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCc-CCCcCEE
Confidence            34455554   3345789999999999998888  567999999998          478999999999887 5799999


Q ss_pred             eeccccccc-CHHHHHHHHHHhccCC
Q psy10644        172 VFCLSLMGT-DLAACIKEANRILKLG  196 (196)
Q Consensus       172 i~~~~lh~~-d~~~~l~e~~rvLkpg  196 (196)
                      ++..++|+. ++..+|++++|+||||
T Consensus       122 ~~~~~l~~~~d~~~~l~~~~~~Lkpg  147 (279)
T 3ccf_A          122 FSNAMLHWVKEPEAAIASIHQALKSG  147 (279)
T ss_dssp             EEESCGGGCSCHHHHHHHHHHHEEEE
T ss_pred             EEcchhhhCcCHHHHHHHHHHhcCCC
Confidence            999999664 9999999999999996

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.57  E-value=1.5e-15  Score=121.48  Aligned_cols=79  Identities=15%  Similarity=0.139  Sum_probs=69.0

Q ss_pred             CCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC-------CCceEEEecCCCC--CCCCCceeeEeeccccc-cc--CHH
Q psy10644        118 GRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA-------LNERVTSCDMTRT--PLKPYSVDVAVFCLSLM-GT--DLA  183 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~-------~~~~~~~~d~~~l--p~~~~sfD~Vi~~~~lh-~~--d~~  183 (196)
                      ++.+|||||||+|.++..+  .+.+|+|+|+|+       .++.++.+|+..+  ++++++||+|++..++| ..  +..
T Consensus        41 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~  120 (240)
T 3dli_A           41 GCRRVLDIGCGRGEFLELCKEEGIESIGVDINEDMIKFCEGKFNVVKSDAIEYLKSLPDKYLDGVMISHFVEHLDPERLF  120 (240)
T ss_dssp             TCSCEEEETCTTTHHHHHHHHHTCCEEEECSCHHHHHHHHTTSEEECSCHHHHHHTSCTTCBSEEEEESCGGGSCGGGHH
T ss_pred             CCCeEEEEeCCCCHHHHHHHhCCCcEEEEECCHHHHHHHHhhcceeeccHHHHhhhcCCCCeeEEEECCchhhCCcHHHH
Confidence            4689999999999999888  567999999998       4578888888765  88899999999999995 44  569


Q ss_pred             HHHHHHHHhccCC
Q psy10644        184 ACIKEANRILKLG  196 (196)
Q Consensus       184 ~~l~e~~rvLkpg  196 (196)
                      .++++++|+||||
T Consensus       121 ~~l~~~~~~Lkpg  133 (240)
T 3dli_A          121 ELLSLCYSKMKYS  133 (240)
T ss_dssp             HHHHHHHHHBCTT
T ss_pred             HHHHHHHHHcCCC
Confidence            9999999999997

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.57  E-value=5.1e-15  Score=120.43  Aligned_cols=80  Identities=20%  Similarity=0.361  Sum_probs=71.6

Q ss_pred             CCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC---------------CCceEEEecCCCCCCCCCceeeEeecccc
Q psy10644        117 KGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDVAVFCLSL  177 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l  177 (196)
                      .++.+|||||||+|.++..+    ++.+|+|+|+++               .++.++.+|+..+++++++||+|++..++
T Consensus        36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l  115 (276)
T 3mgg_A           36 PPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFVL  115 (276)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESCG
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEechh
Confidence            45789999999999998887    367999999997               36889999999999999999999999999


Q ss_pred             cc-cCHHHHHHHHHHhccCC
Q psy10644        178 MG-TDLAACIKEANRILKLG  196 (196)
Q Consensus       178 h~-~d~~~~l~e~~rvLkpg  196 (196)
                      |+ .++..++++++++||||
T Consensus       116 ~~~~~~~~~l~~~~~~L~pg  135 (276)
T 3mgg_A          116 EHLQSPEEALKSLKKVLKPG  135 (276)
T ss_dssp             GGCSCHHHHHHHHHHHEEEE
T ss_pred             hhcCCHHHHHHHHHHHcCCC
Confidence            54 49999999999999996

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.57  E-value=9e-15  Score=117.47  Aligned_cols=81  Identities=19%  Similarity=0.118  Sum_probs=71.1

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc---cCCeEEEEeCCC----------------CCceEEEecCCCCCCCCCceeeEeecc
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL---TQHKVHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAVFCL  175 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l---~~~~v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~  175 (196)
                      ...++.+|||||||+|.++..+   .+.+|+|+|+|+                .++.+.++|+.++++ +++||+|++..
T Consensus        33 ~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~V~~~~  111 (256)
T 1nkv_A           33 RMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA-NEKCDVAACVG  111 (256)
T ss_dssp             CCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC-SSCEEEEEEES
T ss_pred             CCCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc-CCCCCEEEECC
Confidence            4455789999999999998877   267999999998                268999999999887 88999999999


Q ss_pred             ccccc-CHHHHHHHHHHhccCC
Q psy10644        176 SLMGT-DLAACIKEANRILKLG  196 (196)
Q Consensus       176 ~lh~~-d~~~~l~e~~rvLkpg  196 (196)
                      ++|+. ++..+|++++|+||||
T Consensus       112 ~~~~~~~~~~~l~~~~r~Lkpg  133 (256)
T 1nkv_A          112 ATWIAGGFAGAEELLAQSLKPG  133 (256)
T ss_dssp             CGGGTSSSHHHHHHHTTSEEEE
T ss_pred             ChHhcCCHHHHHHHHHHHcCCC
Confidence            99655 9999999999999996

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.57  E-value=1e-14  Score=118.29  Aligned_cols=82  Identities=23%  Similarity=0.334  Sum_probs=72.4

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc---cCCeEEEEeCCC----------------CCceEEEecCCCCCCCCCceeeEeecc
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL---TQHKVHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAVFCL  175 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l---~~~~v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~  175 (196)
                      ...++.+|||||||+|.++..+   .+.+|+|+|+|+                .++.++.+|+..+|+++++||+|++..
T Consensus        58 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~  137 (273)
T 3bus_A           58 DVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDASFDAVWALE  137 (273)
T ss_dssp             CCCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCTTCEEEEEEES
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCCCCccEEEEec
Confidence            3445789999999999998887   367999999997                258999999999999999999999999


Q ss_pred             ccccc-CHHHHHHHHHHhccCC
Q psy10644        176 SLMGT-DLAACIKEANRILKLG  196 (196)
Q Consensus       176 ~lh~~-d~~~~l~e~~rvLkpg  196 (196)
                      ++|+. ++..+|++++|+||||
T Consensus       138 ~l~~~~~~~~~l~~~~~~L~pg  159 (273)
T 3bus_A          138 SLHHMPDRGRALREMARVLRPG  159 (273)
T ss_dssp             CTTTSSCHHHHHHHHHTTEEEE
T ss_pred             hhhhCCCHHHHHHHHHHHcCCC
Confidence            99554 9999999999999996

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.56  E-value=1.1e-14  Score=115.90  Aligned_cols=80  Identities=29%  Similarity=0.326  Sum_probs=70.7

Q ss_pred             CCCCEEEEEcCCCchhHhhc--cCC-eEEEEeCCC------------CCceEEEecCCCCCCCCCceeeEeeccccccc-
Q psy10644        117 KGRLVIADLGCGEAKLAAEL--TQH-KVHSLDLVA------------LNERVTSCDMTRTPLKPYSVDVAVFCLSLMGT-  180 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l--~~~-~v~giDls~------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~~-  180 (196)
                      .++.+|||||||+|.++..+  .+. +|+|+|+++            .++.+..+|+..+++++++||+|++..++|+. 
T Consensus        42 ~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~  121 (243)
T 3bkw_A           42 VGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDLAYSSLALHYVE  121 (243)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEEEEEESCGGGCS
T ss_pred             cCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceEEEEeccccccc
Confidence            34789999999999998888  455 999999997            25789999999888888999999999999655 


Q ss_pred             CHHHHHHHHHHhccCC
Q psy10644        181 DLAACIKEANRILKLG  196 (196)
Q Consensus       181 d~~~~l~e~~rvLkpg  196 (196)
                      ++..+|++++++||||
T Consensus       122 ~~~~~l~~~~~~L~pg  137 (243)
T 3bkw_A          122 DVARLFRTVHQALSPG  137 (243)
T ss_dssp             CHHHHHHHHHHHEEEE
T ss_pred             hHHHHHHHHHHhcCcC
Confidence            9999999999999986

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.56  E-value=8.3e-15  Score=119.09  Aligned_cols=91  Identities=14%  Similarity=0.114  Sum_probs=72.3

Q ss_pred             HHHHHHHhh-cCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC---------C-----------------------C
Q psy10644        106 IIIKSIQER-ESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA---------L-----------------------N  150 (196)
Q Consensus       106 ~~~~~l~~~-~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~---------~-----------------------~  150 (196)
                      .+.+++... ...++.+|||+|||+|..+..|  .+++|+|+|+|+         .                       +
T Consensus        55 ~l~~~~~~~~~~~~~~~vLD~GCG~G~~~~~La~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (252)
T 2gb4_A           55 LLKKHLDTFLKGQSGLRVFFPLCGKAIEMKWFADRGHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGS  134 (252)
T ss_dssp             HHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSS
T ss_pred             HHHHHHHHhccCCCCCeEEEeCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCc
Confidence            344444332 1234789999999999999988  578999999998         1                       3


Q ss_pred             ceEEEecCCCCCCCC-CceeeEeeccccccc---CHHHHHHHHHHhccCC
Q psy10644        151 ERVTSCDMTRTPLKP-YSVDVAVFCLSLMGT---DLAACIKEANRILKLG  196 (196)
Q Consensus       151 ~~~~~~d~~~lp~~~-~sfD~Vi~~~~lh~~---d~~~~l~e~~rvLkpg  196 (196)
                      +.++++|+..+++++ ++||+|++..+||..   +...++++++|+||||
T Consensus       135 i~~~~~D~~~l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpG  184 (252)
T 2gb4_A          135 ISLYCCSIFDLPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKE  184 (252)
T ss_dssp             EEEEESCTTTGGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEE
T ss_pred             eEEEECccccCCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCC
Confidence            578999999988764 899999998888433   5778999999999997

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.56  E-value=3.7e-15  Score=123.91  Aligned_cols=81  Identities=27%  Similarity=0.342  Sum_probs=72.9

Q ss_pred             CCCCCEEEEEcCCCchhHhhc--c-CCeEEEEeCCC----------------CCceEEEecCCCCCCCCCceeeEeeccc
Q psy10644        116 SKGRLVIADLGCGEAKLAAEL--T-QHKVHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAVFCLS  176 (196)
Q Consensus       116 ~~~~~~ILDlGCG~G~~a~~l--~-~~~v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~  176 (196)
                      ..++.+|||||||+|.++..+  . +.+|+|+|+++                .++.++.+|+..+|+++++||+|++..+
T Consensus       115 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~  194 (312)
T 3vc1_A          115 AGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGAVTASWNNES  194 (312)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEEESC
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCCCEeEEEECCc
Confidence            345789999999999998888  2 77999999998                2589999999999999999999999999


Q ss_pred             ccccCHHHHHHHHHHhccCC
Q psy10644        177 LMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       177 lh~~d~~~~l~e~~rvLkpg  196 (196)
                      +|+.++..+|++++|+||||
T Consensus       195 l~~~~~~~~l~~~~~~Lkpg  214 (312)
T 3vc1_A          195 TMYVDLHDLFSEHSRFLKVG  214 (312)
T ss_dssp             GGGSCHHHHHHHHHHHEEEE
T ss_pred             hhhCCHHHHHHHHHHHcCCC
Confidence            97668999999999999996

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.56  E-value=5.8e-15  Score=115.92  Aligned_cols=90  Identities=20%  Similarity=0.290  Sum_probs=75.6

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC---------------CCceEEEecCCCCCC
Q psy10644        104 VDIIIKSIQERESKGRLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA---------------LNERVTSCDMTRTPL  163 (196)
Q Consensus       104 ~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~---------------~~~~~~~~d~~~lp~  163 (196)
                      ...+++.+   ...++.+|||||||+|.++..+     +..+|+|+|+++               .++.++.+|+..+++
T Consensus        26 ~~~~~~~~---~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~  102 (219)
T 3dh0_A           26 PEKVLKEF---GLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPL  102 (219)
T ss_dssp             HHHHHHHH---TCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSS
T ss_pred             HHHHHHHh---CCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCC
Confidence            34444444   3445789999999999998887     236999999998               368999999999999


Q ss_pred             CCCceeeEeeccccccc-CHHHHHHHHHHhccCC
Q psy10644        164 KPYSVDVAVFCLSLMGT-DLAACIKEANRILKLG  196 (196)
Q Consensus       164 ~~~sfD~Vi~~~~lh~~-d~~~~l~e~~rvLkpg  196 (196)
                      ++++||+|++..++|+. ++..++++++|+||||
T Consensus       103 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lkpg  136 (219)
T 3dh0_A          103 PDNTVDFIFMAFTFHELSEPLKFLEELKRVAKPF  136 (219)
T ss_dssp             CSSCEEEEEEESCGGGCSSHHHHHHHHHHHEEEE
T ss_pred             CCCCeeEEEeehhhhhcCCHHHHHHHHHHHhCCC
Confidence            99999999999999655 9999999999999986

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.56  E-value=1.2e-14  Score=117.45  Aligned_cols=90  Identities=16%  Similarity=0.180  Sum_probs=73.7

Q ss_pred             HHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC----------CCceEEEecCCCCCCCCCceeeEe
Q psy10644        105 DIIIKSIQERESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA----------LNERVTSCDMTRTPLKPYSVDVAV  172 (196)
Q Consensus       105 ~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~----------~~~~~~~~d~~~lp~~~~sfD~Vi  172 (196)
                      ..+++.+....+ ++.+|||||||+|.++..+  .+.+|+|+|+|+          .++.++++|+..+++ +++||+|+
T Consensus        38 ~~~~~~l~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~fD~v~  115 (263)
T 3pfg_A           38 ADLAALVRRHSP-KAASLLDVACGTGMHLRHLADSFGTVEGLELSADMLAIARRRNPDAVLHHGDMRDFSL-GRRFSAVT  115 (263)
T ss_dssp             HHHHHHHHHHCT-TCCEEEEETCTTSHHHHHHTTTSSEEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCC-SCCEEEEE
T ss_pred             HHHHHHHHhhCC-CCCcEEEeCCcCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCCCEEEECChHHCCc-cCCcCEEE
Confidence            344455544332 3679999999999999988  456999999998          478999999999888 78999999


Q ss_pred             ecc-ccccc----CHHHHHHHHHHhccCC
Q psy10644        173 FCL-SLMGT----DLAACIKEANRILKLG  196 (196)
Q Consensus       173 ~~~-~lh~~----d~~~~l~e~~rvLkpg  196 (196)
                      +.. ++|+.    +...+|++++++||||
T Consensus       116 ~~~~~l~~~~~~~~~~~~l~~~~~~L~pg  144 (263)
T 3pfg_A          116 CMFSSIGHLAGQAELDAALERFAAHVLPD  144 (263)
T ss_dssp             ECTTGGGGSCHHHHHHHHHHHHHHTEEEE
T ss_pred             EcCchhhhcCCHHHHHHHHHHHHHhcCCC
Confidence            998 88543    6778999999999986

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.56  E-value=1.4e-14  Score=112.90  Aligned_cols=92  Identities=18%  Similarity=0.268  Sum_probs=75.5

Q ss_pred             hHHHHHHHHHhhcCCCCCEEEEEcCCCchhH-hhc--cCCeEEEEeCCC--------------CCceEEEecCCCCCCCC
Q psy10644        103 PVDIIIKSIQERESKGRLVIADLGCGEAKLA-AEL--TQHKVHSLDLVA--------------LNERVTSCDMTRTPLKP  165 (196)
Q Consensus       103 ~~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a-~~l--~~~~v~giDls~--------------~~~~~~~~d~~~lp~~~  165 (196)
                      .+..+++.+....+  +.+|||+|||+|.++ ..+  .+.+|+|+|+|+              .++.++.+|+..+++++
T Consensus        10 ~~~~~~~~~~~~~~--~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~   87 (209)
T 2p8j_A           10 QLYRFLKYCNESNL--DKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKD   87 (209)
T ss_dssp             HHHHHHHHHHHSSS--CSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCT
T ss_pred             hHHHHHHHHhccCC--CCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCC
Confidence            35566666655443  789999999999873 333  567999999997              36889999999999989


Q ss_pred             CceeeEeeccccc-c--cCHHHHHHHHHHhccCC
Q psy10644        166 YSVDVAVFCLSLM-G--TDLAACIKEANRILKLG  196 (196)
Q Consensus       166 ~sfD~Vi~~~~lh-~--~d~~~~l~e~~rvLkpg  196 (196)
                      ++||+|++..++| .  .++..++++++++||||
T Consensus        88 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg  121 (209)
T 2p8j_A           88 ESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPG  121 (209)
T ss_dssp             TCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred             CceeEEEEcChHHhCCHHHHHHHHHHHHHHcCCC
Confidence            9999999999995 4  37899999999999986

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.56  E-value=1.3e-14  Score=116.60  Aligned_cols=85  Identities=18%  Similarity=0.159  Sum_probs=73.5

Q ss_pred             HHhhcCCCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC----------CCceEEEecCCCCCCCCCceeeEeeccc
Q psy10644        111 IQERESKGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA----------LNERVTSCDMTRTPLKPYSVDVAVFCLS  176 (196)
Q Consensus       111 l~~~~~~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~----------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~  176 (196)
                      +......++.+|||||||+|.++..+    ++.+|+|+|+++          .++.++.+|++.++ ++++||+|++..+
T Consensus        26 ~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~  104 (259)
T 2p35_A           26 LAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWK-PAQKADLLYANAV  104 (259)
T ss_dssp             HTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCC-CSSCEEEEEEESC
T ss_pred             HHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcC-ccCCcCEEEEeCc
Confidence            33334455789999999999998887    377999999997          47899999999988 7889999999999


Q ss_pred             cccc-CHHHHHHHHHHhccCC
Q psy10644        177 LMGT-DLAACIKEANRILKLG  196 (196)
Q Consensus       177 lh~~-d~~~~l~e~~rvLkpg  196 (196)
                      +|+. ++..+|++++|+||||
T Consensus       105 l~~~~~~~~~l~~~~~~L~pg  125 (259)
T 2p35_A          105 FQWVPDHLAVLSQLMDQLESG  125 (259)
T ss_dssp             GGGSTTHHHHHHHHGGGEEEE
T ss_pred             hhhCCCHHHHHHHHHHhcCCC
Confidence            9765 9999999999999986

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.55  E-value=6.1e-15  Score=115.42  Aligned_cols=78  Identities=24%  Similarity=0.262  Sum_probs=69.0

Q ss_pred             CCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC---------CCceEEEecCCCCCCCCCceeeEeecccccc-c--CHH
Q psy10644        118 GRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA---------LNERVTSCDMTRTPLKPYSVDVAVFCLSLMG-T--DLA  183 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~---------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~-~--d~~  183 (196)
                      ++.+|||||||+|.++..+  .+.+|+|+|+++         .++.+..+|+..++ ++++||+|++..++|+ .  ++.
T Consensus        43 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~~~~~~  121 (211)
T 3e23_A           43 AGAKILELGCGAGYQAEAMLAAGFDVDATDGSPELAAEASRRLGRPVRTMLFHQLD-AIDAYDAVWAHACLLHVPRDELA  121 (211)
T ss_dssp             TTCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTSCCEECCGGGCC-CCSCEEEEEECSCGGGSCHHHHH
T ss_pred             CCCcEEEECCCCCHHHHHHHHcCCeEEEECCCHHHHHHHHHhcCCceEEeeeccCC-CCCcEEEEEecCchhhcCHHHHH
Confidence            3779999999999999888  467999999998         26788999999888 7899999999999954 4  788


Q ss_pred             HHHHHHHHhccCC
Q psy10644        184 ACIKEANRILKLG  196 (196)
Q Consensus       184 ~~l~e~~rvLkpg  196 (196)
                      .+|++++|+||||
T Consensus       122 ~~l~~~~~~Lkpg  134 (211)
T 3e23_A          122 DVLKLIWRALKPG  134 (211)
T ss_dssp             HHHHHHHHHEEEE
T ss_pred             HHHHHHHHhcCCC
Confidence            9999999999986

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.54  E-value=2.4e-14  Score=113.88  Aligned_cols=105  Identities=14%  Similarity=0.119  Sum_probs=78.5

Q ss_pred             HHHHhhhhcCCC-ChHHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC----------------CC
Q psy10644         90 EGFKKQVTQWPI-NPVDIIIKSIQERESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA----------------LN  150 (196)
Q Consensus        90 ~~y~~~~~~w~~-~~~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~----------------~~  150 (196)
                      ..|......|.. .+...+.+.+..... +..+|||||||+|.++..+  .+.+|+|+|+++                .+
T Consensus        38 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~  116 (235)
T 3lcc_A           38 KCWEEEITPWDQGRATPLIVHLVDTSSL-PLGRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSSPKAEY  116 (235)
T ss_dssp             HHHHTTCCTTCCSSCCHHHHHHHHTTCS-CCEEEEEETCTTCHHHHHHCBTTEEEEEECSCHHHHHHHHHHHTTSGGGGG
T ss_pred             HHHhcCCCCcccCCCCHHHHHHHHhcCC-CCCCEEEeCCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHhhccCCCcc
Confidence            334443334542 233445555544333 2459999999999999988  556999999998                13


Q ss_pred             ceEEEecCCCCCCCCCceeeEeeccccc-cc--CHHHHHHHHHHhccCC
Q psy10644        151 ERVTSCDMTRTPLKPYSVDVAVFCLSLM-GT--DLAACIKEANRILKLG  196 (196)
Q Consensus       151 ~~~~~~d~~~lp~~~~sfD~Vi~~~~lh-~~--d~~~~l~e~~rvLkpg  196 (196)
                      +.++++|+..++ ++++||+|++..++| ..  +...++++++++||||
T Consensus       117 v~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg  164 (235)
T 3lcc_A          117 FSFVKEDVFTWR-PTELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPD  164 (235)
T ss_dssp             EEEECCCTTTCC-CSSCEEEEEEESSTTTSCGGGHHHHHHHHHHHEEEE
T ss_pred             eEEEECchhcCC-CCCCeeEEEEChhhhcCCHHHHHHHHHHHHHHCCCC
Confidence            789999998877 456999999999995 44  7899999999999986

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.53  E-value=3e-14  Score=113.22  Aligned_cols=78  Identities=27%  Similarity=0.366  Sum_probs=68.1

Q ss_pred             CCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC--------------CCceEEEecCCCCCCCCCceeeEeecc-ccc-c
Q psy10644        118 GRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA--------------LNERVTSCDMTRTPLKPYSVDVAVFCL-SLM-G  179 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~--------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~-~lh-~  179 (196)
                      ++.+|||||||+|.++..+  .+.+|+|+|+++              .++.++++|+..++++ ++||+|++.. ++| .
T Consensus        37 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~~l~~~  115 (246)
T 1y8c_A           37 VFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNIN-RKFDLITCCLDSTNYI  115 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCS-CCEEEEEECTTGGGGC
T ss_pred             CCCeEEEeCCCCCHHHHHHHHCCCcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCcc-CCceEEEEcCcccccc
Confidence            4689999999999998888  466999999998              1689999999888876 8999999998 994 4


Q ss_pred             ---cCHHHHHHHHHHhccCC
Q psy10644        180 ---TDLAACIKEANRILKLG  196 (196)
Q Consensus       180 ---~d~~~~l~e~~rvLkpg  196 (196)
                         .++..+|++++++||||
T Consensus       116 ~~~~~~~~~l~~~~~~L~pg  135 (246)
T 1y8c_A          116 IDSDDLKKYFKAVSNHLKEG  135 (246)
T ss_dssp             CSHHHHHHHHHHHHTTEEEE
T ss_pred             CCHHHHHHHHHHHHHhcCCC
Confidence               36889999999999986

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.53  E-value=4.8e-14  Score=114.11  Aligned_cols=88  Identities=16%  Similarity=0.115  Sum_probs=71.9

Q ss_pred             HHHHHhhcCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCCC---------CceEEEecCCCCCCCCCceeeEeeccc
Q psy10644        108 IKSIQERESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVAL---------NERVTSCDMTRTPLKPYSVDVAVFCLS  176 (196)
Q Consensus       108 ~~~l~~~~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~~---------~~~~~~~d~~~lp~~~~sfD~Vi~~~~  176 (196)
                      .+.+....+ ++.+|||||||+|.++..+  .+.+|+|+|+|+.         ...++++|+..+++++++||+|++..+
T Consensus        45 ~~~l~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~  123 (260)
T 2avn_A           45 GSFLEEYLK-NPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGD  123 (260)
T ss_dssp             HHHHHHHCC-SCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSS
T ss_pred             HHHHHHhcC-CCCeEEEeCCCcCHHHHHHHHcCCeEEEEeCCHHHHHHHHhhcCCCEEECcHHHCCCCCCCEEEEEEcch
Confidence            344443332 4789999999999999888  4569999999981         123889999999998999999999887


Q ss_pred             c-ccc-CHHHHHHHHHHhccCC
Q psy10644        177 L-MGT-DLAACIKEANRILKLG  196 (196)
Q Consensus       177 l-h~~-d~~~~l~e~~rvLkpg  196 (196)
                      + |.. ++..+|++++|+||||
T Consensus       124 ~~~~~~~~~~~l~~~~~~Lkpg  145 (260)
T 2avn_A          124 VLSYVENKDKAFSEIRRVLVPD  145 (260)
T ss_dssp             HHHHCSCHHHHHHHHHHHEEEE
T ss_pred             hhhccccHHHHHHHHHHHcCCC
Confidence            6 664 8999999999999986

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.52  E-value=2.9e-14  Score=111.80  Aligned_cols=79  Identities=15%  Similarity=0.237  Sum_probs=68.1

Q ss_pred             CCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC-------------CCceEEEecCCCCCCCCCceeeEeeccccccc-
Q psy10644        117 KGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA-------------LNERVTSCDMTRTPLKPYSVDVAVFCLSLMGT-  180 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~-------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~~-  180 (196)
                      .++.+|||||||+|.++..+  .+.+|+|+|+++             .++.++++|+..++ ++++||+|++..++|+. 
T Consensus        50 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~  128 (216)
T 3ofk_A           50 GAVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFS-TAELFDLIVVAEVLYYLE  128 (216)
T ss_dssp             SSEEEEEEECCTTSHHHHHHGGGEEEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCC-CSCCEEEEEEESCGGGSS
T ss_pred             CCCCcEEEEcCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCC-CCCCccEEEEccHHHhCC
Confidence            34679999999999999888  345999999998             36899999999888 68899999999999655 


Q ss_pred             CH---HHHHHHHHHhccCC
Q psy10644        181 DL---AACIKEANRILKLG  196 (196)
Q Consensus       181 d~---~~~l~e~~rvLkpg  196 (196)
                      ++   ..+|++++++||||
T Consensus       129 ~~~~~~~~l~~~~~~L~pg  147 (216)
T 3ofk_A          129 DMTQMRTAIDNMVKMLAPG  147 (216)
T ss_dssp             SHHHHHHHHHHHHHTEEEE
T ss_pred             CHHHHHHHHHHHHHHcCCC
Confidence            66   57799999999986

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.52  E-value=9.2e-14  Score=109.60  Aligned_cols=87  Identities=23%  Similarity=0.237  Sum_probs=73.6

Q ss_pred             HHHHHHHhhcCCCCCEEEEEcCCCchhHhhccCCeEEEEeCCC--------CCceEEEecCCCCCCCCCceeeEeecccc
Q psy10644        106 IIIKSIQERESKGRLVIADLGCGEAKLAAELTQHKVHSLDLVA--------LNERVTSCDMTRTPLKPYSVDVAVFCLSL  177 (196)
Q Consensus       106 ~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l~~~~v~giDls~--------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l  177 (196)
                      ..++.+....+  +.+|||||||+|.++..+...  +|+|+++        .++.++.+|+..+++++++||+|++..++
T Consensus        37 ~~~~~l~~~~~--~~~vLDiG~G~G~~~~~l~~~--~~vD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l  112 (219)
T 1vlm_A           37 SELQAVKCLLP--EGRGVEIGVGTGRFAVPLKIK--IGVEPSERMAEIARKRGVFVLKGTAENLPLKDESFDFALMVTTI  112 (219)
T ss_dssp             HHHHHHHHHCC--SSCEEEETCTTSTTHHHHTCC--EEEESCHHHHHHHHHTTCEEEECBTTBCCSCTTCEEEEEEESCG
T ss_pred             HHHHHHHHhCC--CCcEEEeCCCCCHHHHHHHHH--hccCCCHHHHHHHHhcCCEEEEcccccCCCCCCCeeEEEEcchH
Confidence            33445554444  779999999999999988554  9999998        37889999999999988999999999999


Q ss_pred             ccc-CHHHHHHHHHHhccCC
Q psy10644        178 MGT-DLAACIKEANRILKLG  196 (196)
Q Consensus       178 h~~-d~~~~l~e~~rvLkpg  196 (196)
                      |+. ++..+|+++.++||||
T Consensus       113 ~~~~~~~~~l~~~~~~L~pg  132 (219)
T 1vlm_A          113 CFVDDPERALKEAYRILKKG  132 (219)
T ss_dssp             GGSSCHHHHHHHHHHHEEEE
T ss_pred             hhccCHHHHHHHHHHHcCCC
Confidence            654 9999999999999986

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.52  E-value=1.8e-14  Score=118.21  Aligned_cols=78  Identities=22%  Similarity=0.259  Sum_probs=68.9

Q ss_pred             CCCEEEEEcCCCchhHhhc----c-CCeEEEEeCCC--------------CCceEEEecCCCCCCCCCceeeEeeccccc
Q psy10644        118 GRLVIADLGCGEAKLAAEL----T-QHKVHSLDLVA--------------LNERVTSCDMTRTPLKPYSVDVAVFCLSLM  178 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l----~-~~~v~giDls~--------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh  178 (196)
                      ++.+|||||||+|.++..+    + +.+|+|+|+|+              .++.++++|+.++++ +++||+|++..++|
T Consensus        22 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~~~~l~  100 (284)
T 3gu3_A           22 KPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIEL-NDKYDIAICHAFLL  100 (284)
T ss_dssp             SCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCC-SSCEEEEEEESCGG
T ss_pred             CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCc-CCCeeEEEECChhh
Confidence            4789999999999998888    2 46999999998              268899999999888 46999999999995


Q ss_pred             cc-CHHHHHHHHHHhccCC
Q psy10644        179 GT-DLAACIKEANRILKLG  196 (196)
Q Consensus       179 ~~-d~~~~l~e~~rvLkpg  196 (196)
                      +. ++..++++++|+||||
T Consensus       101 ~~~~~~~~l~~~~~~Lkpg  119 (284)
T 3gu3_A          101 HMTTPETMLQKMIHSVKKG  119 (284)
T ss_dssp             GCSSHHHHHHHHHHTEEEE
T ss_pred             cCCCHHHHHHHHHHHcCCC
Confidence            54 9999999999999996

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.51  E-value=4.3e-14  Score=113.18  Aligned_cols=87  Identities=18%  Similarity=0.223  Sum_probs=72.5

Q ss_pred             HHHhhcCCCCCEEEEEcCCCchhHhhc--c-CCeEEEEeCCC-------------CCceEEEecCCCCCCCCCceeeEee
Q psy10644        110 SIQERESKGRLVIADLGCGEAKLAAEL--T-QHKVHSLDLVA-------------LNERVTSCDMTRTPLKPYSVDVAVF  173 (196)
Q Consensus       110 ~l~~~~~~~~~~ILDlGCG~G~~a~~l--~-~~~v~giDls~-------------~~~~~~~~d~~~lp~~~~sfD~Vi~  173 (196)
                      .+......++.+|||||||+|.++..+  . ..+|+++|+++             .++.++.+|+..+++++++||+|++
T Consensus        85 ~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~  164 (254)
T 1xtp_A           85 FIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVI  164 (254)
T ss_dssp             HHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEE
T ss_pred             HHHhhcccCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCeEEEEE
Confidence            344334445789999999999998887  2 45799999998             2578899999999998899999999


Q ss_pred             ccccccc---CHHHHHHHHHHhccCC
Q psy10644        174 CLSLMGT---DLAACIKEANRILKLG  196 (196)
Q Consensus       174 ~~~lh~~---d~~~~l~e~~rvLkpg  196 (196)
                      ..++|+.   ++..+|++++|+||||
T Consensus       165 ~~~l~~~~~~~~~~~l~~~~~~Lkpg  190 (254)
T 1xtp_A          165 QWTAIYLTDADFVKFFKHCQQALTPN  190 (254)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred             cchhhhCCHHHHHHHHHHHHHhcCCC
Confidence            9999544   5889999999999986

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.51  E-value=6.8e-14  Score=112.16  Aligned_cols=89  Identities=25%  Similarity=0.296  Sum_probs=70.1

Q ss_pred             HHHHHHhhcCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC--------------CCceEEEecCCCCCCCCCceee
Q psy10644        107 IIKSIQERESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA--------------LNERVTSCDMTRTPLKPYSVDV  170 (196)
Q Consensus       107 ~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~--------------~~~~~~~~d~~~lp~~~~sfD~  170 (196)
                      +.+.+......++.+|||+|||+|.++..+  .+.+|+|+|+|+              .++.++++|+..++++ ++||+
T Consensus        30 ~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~  108 (252)
T 1wzn_A           30 VEEIFKEDAKREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFK-NEFDA  108 (252)
T ss_dssp             HHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCC-SCEEE
T ss_pred             HHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccC-CCccE
Confidence            334444444445689999999999998888  567999999998              2578999999888765 68999


Q ss_pred             Eeecccc-ccc---CHHHHHHHHHHhccCC
Q psy10644        171 AVFCLSL-MGT---DLAACIKEANRILKLG  196 (196)
Q Consensus       171 Vi~~~~l-h~~---d~~~~l~e~~rvLkpg  196 (196)
                      |++..+. ++.   +...++++++++||||
T Consensus       109 v~~~~~~~~~~~~~~~~~~l~~~~~~L~pg  138 (252)
T 1wzn_A          109 VTMFFSTIMYFDEEDLRKLFSKVAEALKPG  138 (252)
T ss_dssp             EEECSSGGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred             EEEcCCchhcCCHHHHHHHHHHHHHHcCCC
Confidence            9987543 332   6789999999999986

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.51  E-value=4.6e-14  Score=110.65  Aligned_cols=79  Identities=19%  Similarity=0.209  Sum_probs=67.1

Q ss_pred             CCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC---------CCceEEEecCCCC---CCCCC-ceeeEeecccccccCH
Q psy10644        118 GRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA---------LNERVTSCDMTRT---PLKPY-SVDVAVFCLSLMGTDL  182 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~---------~~~~~~~~d~~~l---p~~~~-sfD~Vi~~~~lh~~d~  182 (196)
                      ++.+|||||||+|.++..+  .+.+|+|+|+++         .++.+..+|+..+   ++..+ +||+|++..++|..++
T Consensus        52 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l~~~~~  131 (227)
T 3e8s_A           52 QPERVLDLGCGEGWLLRALADRGIEAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDLICANFALLHQDI  131 (227)
T ss_dssp             CCSEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEEEEEEESCCCSSCC
T ss_pred             CCCEEEEeCCCCCHHHHHHHHCCCEEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCccEEEECchhhhhhH
Confidence            3689999999999999888  466999999998         4677888887655   54444 5999999999995599


Q ss_pred             HHHHHHHHHhccCC
Q psy10644        183 AACIKEANRILKLG  196 (196)
Q Consensus       183 ~~~l~e~~rvLkpg  196 (196)
                      ..++++++++||||
T Consensus       132 ~~~l~~~~~~L~pg  145 (227)
T 3e8s_A          132 IELLSAMRTLLVPG  145 (227)
T ss_dssp             HHHHHHHHHTEEEE
T ss_pred             HHHHHHHHHHhCCC
Confidence            99999999999986

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.50  E-value=4.1e-14  Score=115.97  Aligned_cols=79  Identities=16%  Similarity=0.164  Sum_probs=68.3

Q ss_pred             CCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC-------------------CCceEEEecCCCCC---CCCCceeeEee
Q psy10644        118 GRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA-------------------LNERVTSCDMTRTP---LKPYSVDVAVF  173 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~-------------------~~~~~~~~d~~~lp---~~~~sfD~Vi~  173 (196)
                      ++.+|||||||+|.++..+  .+.+|+|+|+|+                   .++.+..+|+..++   +++++||+|++
T Consensus        57 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~  136 (293)
T 3thr_A           57 GCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVIC  136 (293)
T ss_dssp             TCCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeEEEEE
Confidence            3679999999999999888  566999999998                   24567888888877   78899999999


Q ss_pred             c-cccc-ccC-------HHHHHHHHHHhccCC
Q psy10644        174 C-LSLM-GTD-------LAACIKEANRILKLG  196 (196)
Q Consensus       174 ~-~~lh-~~d-------~~~~l~e~~rvLkpg  196 (196)
                      . .++| ..+       +..++++++|+||||
T Consensus       137 ~g~~l~~~~~~~~~~~~~~~~l~~~~~~Lkpg  168 (293)
T 3thr_A          137 LGNSFAHLPDSKGDQSEHRLALKNIASMVRPG  168 (293)
T ss_dssp             CTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEE
T ss_pred             cChHHhhcCccccCHHHHHHHHHHHHHHcCCC
Confidence            8 8884 558       999999999999996

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.50  E-value=5.5e-14  Score=111.45  Aligned_cols=90  Identities=18%  Similarity=0.210  Sum_probs=71.3

Q ss_pred             HHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC----------CCceEEEecCCCCCCCCCceeeEe
Q psy10644        105 DIIIKSIQERESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA----------LNERVTSCDMTRTPLKPYSVDVAV  172 (196)
Q Consensus       105 ~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~----------~~~~~~~~d~~~lp~~~~sfD~Vi  172 (196)
                      ..+.+.+.... .++.+|||||||+|.++..+  .+.+|+|+|+++          .++.++.+|+..+++ +++||+|+
T Consensus        28 ~~~~~~l~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~~D~v~  105 (239)
T 3bxo_A           28 SDIADLVRSRT-PEASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDMLTHARKRLPDATLHQGDMRDFRL-GRKFSAVV  105 (239)
T ss_dssp             HHHHHHHHHHC-TTCCEEEEETCTTSHHHHHHHHHHSEEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCC-SSCEEEEE
T ss_pred             HHHHHHHHHhc-CCCCeEEEecccCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhCCCCEEEECCHHHccc-CCCCcEEE
Confidence            34445554433 34689999999999998888  344899999998          468999999998887 78999999


Q ss_pred             ecc-ccccc----CHHHHHHHHHHhccCC
Q psy10644        173 FCL-SLMGT----DLAACIKEANRILKLG  196 (196)
Q Consensus       173 ~~~-~lh~~----d~~~~l~e~~rvLkpg  196 (196)
                      |.. ++|+.    +...+|++++++||||
T Consensus       106 ~~~~~~~~~~~~~~~~~~l~~~~~~L~pg  134 (239)
T 3bxo_A          106 SMFSSVGYLKTTEELGAAVASFAEHLEPG  134 (239)
T ss_dssp             ECTTGGGGCCSHHHHHHHHHHHHHTEEEE
T ss_pred             EcCchHhhcCCHHHHHHHHHHHHHhcCCC
Confidence            654 77433    5678999999999986

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.50  E-value=9.2e-14  Score=109.26  Aligned_cols=79  Identities=16%  Similarity=0.160  Sum_probs=68.4

Q ss_pred             CCCEEEEEcCCCchhHhhcc--C--CeEEEEeCCC----------C----------CceEEEecCCCCCCCCCceeeEee
Q psy10644        118 GRLVIADLGCGEAKLAAELT--Q--HKVHSLDLVA----------L----------NERVTSCDMTRTPLKPYSVDVAVF  173 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l~--~--~~v~giDls~----------~----------~~~~~~~d~~~lp~~~~sfD~Vi~  173 (196)
                      ++.+|||||||+|.++..+.  .  .+|+|+|+++          .          ++.++.+|+..+++++++||+|++
T Consensus        29 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~  108 (219)
T 3jwg_A           29 NAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAATV  108 (219)
T ss_dssp             TCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEEEE
Confidence            36799999999999998882  2  5999999998          1          789999999888888899999999


Q ss_pred             ccccccc-CH--HHHHHHHHHhccCC
Q psy10644        174 CLSLMGT-DL--AACIKEANRILKLG  196 (196)
Q Consensus       174 ~~~lh~~-d~--~~~l~e~~rvLkpg  196 (196)
                      ..++|+. +.  ..++++++++||||
T Consensus       109 ~~~l~~~~~~~~~~~l~~~~~~Lkpg  134 (219)
T 3jwg_A          109 IEVIEHLDENRLQAFEKVLFEFTRPQ  134 (219)
T ss_dssp             ESCGGGCCHHHHHHHHHHHHTTTCCS
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhhCCC
Confidence            9999554 33  68999999999997

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.50  E-value=8.2e-14  Score=108.48  Aligned_cols=97  Identities=23%  Similarity=0.273  Sum_probs=76.8

Q ss_pred             cCCCChHHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc--cCC-eEEEEeCCC-------------CCceEEEecCCCC
Q psy10644         98 QWPINPVDIIIKSIQERESKGRLVIADLGCGEAKLAAEL--TQH-KVHSLDLVA-------------LNERVTSCDMTRT  161 (196)
Q Consensus        98 ~w~~~~~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l--~~~-~v~giDls~-------------~~~~~~~~d~~~l  161 (196)
                      .|... ...+.+.+.... .++.+|||||||+|.++..+  .+. +|+|+|+++             .++.++.+|+..+
T Consensus        24 ~~~~~-~~~~~~~l~~~~-~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~  101 (215)
T 2pxx_A           24 DWFGD-FSSFRALLEPEL-RPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKL  101 (215)
T ss_dssp             CTTCC-HHHHHHHHGGGC-CTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSC
T ss_pred             ccccC-HHHHHHHHHHhc-CCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcC
Confidence            35333 445666665543 45789999999999998888  333 899999998             3688999999999


Q ss_pred             CCCCCceeeEeeccccc-c---------------cCHHHHHHHHHHhccCC
Q psy10644        162 PLKPYSVDVAVFCLSLM-G---------------TDLAACIKEANRILKLG  196 (196)
Q Consensus       162 p~~~~sfD~Vi~~~~lh-~---------------~d~~~~l~e~~rvLkpg  196 (196)
                      ++++++||+|++..+++ .               .+...+++++.|+||||
T Consensus       102 ~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg  152 (215)
T 2pxx_A          102 DFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPG  152 (215)
T ss_dssp             CSCSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEE
T ss_pred             CCCCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCC
Confidence            99889999999988873 2               15689999999999986

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.49  E-value=1.1e-14  Score=116.35  Aligned_cols=81  Identities=16%  Similarity=0.103  Sum_probs=65.9

Q ss_pred             CCCCCEEEEEcCCCchhHhhccC---CeEEEEeCCC--------------CCceEEEecCCCC--CCCCCceeeEee-cc
Q psy10644        116 SKGRLVIADLGCGEAKLAAELTQ---HKVHSLDLVA--------------LNERVTSCDMTRT--PLKPYSVDVAVF-CL  175 (196)
Q Consensus       116 ~~~~~~ILDlGCG~G~~a~~l~~---~~v~giDls~--------------~~~~~~~~d~~~l--p~~~~sfD~Vi~-~~  175 (196)
                      ..++.+|||||||+|.++..+..   .+|+|+|+|+              .++.++.+|+.++  ++++++||+|++ .+
T Consensus        58 ~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~  137 (236)
T 1zx0_A           58 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY  137 (236)
T ss_dssp             TTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred             CCCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCc
Confidence            34578999999999999988832   2899999998              3578889998887  899999999999 55


Q ss_pred             ccc-----ccCHHHHHHHHHHhccCC
Q psy10644        176 SLM-----GTDLAACIKEANRILKLG  196 (196)
Q Consensus       176 ~lh-----~~d~~~~l~e~~rvLkpg  196 (196)
                      +++     ..+...++++++|+||||
T Consensus       138 ~~~~~~~~~~~~~~~l~~~~r~Lkpg  163 (236)
T 1zx0_A          138 PLSEETWHTHQFNFIKNHAFRLLKPG  163 (236)
T ss_dssp             CCBGGGTTTHHHHHHHHTHHHHEEEE
T ss_pred             ccchhhhhhhhHHHHHHHHHHhcCCC
Confidence            542     224568899999999996

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.49  E-value=7.9e-14  Score=109.60  Aligned_cols=79  Identities=16%  Similarity=0.140  Sum_probs=67.9

Q ss_pred             CCCEEEEEcCCCchhHhhcc--C--CeEEEEeCCC----------C----------CceEEEecCCCCCCCCCceeeEee
Q psy10644        118 GRLVIADLGCGEAKLAAELT--Q--HKVHSLDLVA----------L----------NERVTSCDMTRTPLKPYSVDVAVF  173 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l~--~--~~v~giDls~----------~----------~~~~~~~d~~~lp~~~~sfD~Vi~  173 (196)
                      ++.+|||||||+|.++..+.  +  .+|+|+|+++          .          ++.++.+|+...+.++++||+|++
T Consensus        29 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~  108 (217)
T 3jwh_A           29 NARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAATV  108 (217)
T ss_dssp             TCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEEee
Confidence            36799999999999998882  2  5999999998          1          689999999888877889999999


Q ss_pred             ccccccc-C--HHHHHHHHHHhccCC
Q psy10644        174 CLSLMGT-D--LAACIKEANRILKLG  196 (196)
Q Consensus       174 ~~~lh~~-d--~~~~l~e~~rvLkpg  196 (196)
                      ..++|+. +  ...++++++++||||
T Consensus       109 ~~~l~~~~~~~~~~~l~~~~~~Lkpg  134 (217)
T 3jwh_A          109 IEVIEHLDLSRLGAFERVLFEFAQPK  134 (217)
T ss_dssp             ESCGGGCCHHHHHHHHHHHHTTTCCS
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHcCCC
Confidence            9999544 3  479999999999997

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.49  E-value=1.3e-14  Score=116.42  Aligned_cols=80  Identities=14%  Similarity=0.049  Sum_probs=63.8

Q ss_pred             CCCCEEEEEcCCCchhHhhcc---CCeEEEEeCCC--------------CCceEEEecCCCC--CCCCCceeeEee----
Q psy10644        117 KGRLVIADLGCGEAKLAAELT---QHKVHSLDLVA--------------LNERVTSCDMTRT--PLKPYSVDVAVF----  173 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l~---~~~v~giDls~--------------~~~~~~~~d~~~l--p~~~~sfD~Vi~----  173 (196)
                      .++.+|||||||+|..+..+.   +.+|+++|+++              .++.++.+|.+.+  ++++++||.|++    
T Consensus        59 ~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~~  138 (236)
T 3orh_A           59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYP  138 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCC
T ss_pred             cCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeeee
Confidence            457899999999999998883   34899999998              3566777776543  578899999875    


Q ss_pred             -cccc-cccCHHHHHHHHHHhccCC
Q psy10644        174 -CLSL-MGTDLAACIKEANRILKLG  196 (196)
Q Consensus       174 -~~~l-h~~d~~~~l~e~~rvLkpg  196 (196)
                       ..++ |..++..+++|++|+||||
T Consensus       139 ~~~~~~~~~~~~~~~~e~~rvLkPG  163 (236)
T 3orh_A          139 LSEETWHTHQFNFIKNHAFRLLKPG  163 (236)
T ss_dssp             CBGGGTTTHHHHHHHHTHHHHEEEE
T ss_pred             cccchhhhcchhhhhhhhhheeCCC
Confidence             3344 3448999999999999997

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.48  E-value=8.5e-14  Score=109.83  Aligned_cols=79  Identities=29%  Similarity=0.373  Sum_probs=69.6

Q ss_pred             CCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC------------C--------CceEEEecCCCCCCCCCceeeEeecc
Q psy10644        118 GRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA------------L--------NERVTSCDMTRTPLKPYSVDVAVFCL  175 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~------------~--------~~~~~~~d~~~lp~~~~sfD~Vi~~~  175 (196)
                      ++.+|||||||+|.++..+  .+.+|+|+|+++            .        ++.+..+|+..+++++++||+|++..
T Consensus        30 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~  109 (235)
T 3sm3_A           30 EDDEILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVMQA  109 (235)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEEES
T ss_pred             CCCeEEEECCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEEEcc
Confidence            4789999999999998888  567999999998            1        36889999999999999999999999


Q ss_pred             ccccc-CHH---HHHHHHHHhccCC
Q psy10644        176 SLMGT-DLA---ACIKEANRILKLG  196 (196)
Q Consensus       176 ~lh~~-d~~---~~l~e~~rvLkpg  196 (196)
                      ++|+. ++.   .++++++++||||
T Consensus       110 ~l~~~~~~~~~~~~l~~~~~~L~pg  134 (235)
T 3sm3_A          110 FLTSVPDPKERSRIIKEVFRVLKPG  134 (235)
T ss_dssp             CGGGCCCHHHHHHHHHHHHHHEEEE
T ss_pred             hhhcCCCHHHHHHHHHHHHHHcCCC
Confidence            99554 777   8999999999986

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.48  E-value=1.4e-13  Score=105.26  Aligned_cols=79  Identities=20%  Similarity=0.245  Sum_probs=68.8

Q ss_pred             CCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC----------CCceEEEecCCCCCCCCCceeeEeec-cccccc---C
Q psy10644        118 GRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA----------LNERVTSCDMTRTPLKPYSVDVAVFC-LSLMGT---D  181 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~----------~~~~~~~~d~~~lp~~~~sfD~Vi~~-~~lh~~---d  181 (196)
                      ++.+|||||||+|.++..+  .+.+|+++|+++          .++.++.+|+..+++++++||+|++. .++|+.   +
T Consensus        46 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~~~~  125 (195)
T 3cgg_A           46 RGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGFLAEDG  125 (195)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEECCCCGGGSCHHH
T ss_pred             CCCeEEEECCCCCHHHHHHHHCCCcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEECCcHHhhcChHH
Confidence            4779999999999998888  467999999998          47899999999888888999999998 677543   5


Q ss_pred             HHHHHHHHHHhccCC
Q psy10644        182 LAACIKEANRILKLG  196 (196)
Q Consensus       182 ~~~~l~e~~rvLkpg  196 (196)
                      ...++++++++||||
T Consensus       126 ~~~~l~~~~~~l~~~  140 (195)
T 3cgg_A          126 REPALANIHRALGAD  140 (195)
T ss_dssp             HHHHHHHHHHHEEEE
T ss_pred             HHHHHHHHHHHhCCC
Confidence            688999999999986

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.48  E-value=1.4e-13  Score=108.21  Aligned_cols=78  Identities=24%  Similarity=0.352  Sum_probs=68.4

Q ss_pred             CCEEEEEcCCCchhHhhc--cCCeEEEEeCCC--------------CCceEEEecCCCCCCCCCceeeEeecccc--ccc
Q psy10644        119 RLVIADLGCGEAKLAAEL--TQHKVHSLDLVA--------------LNERVTSCDMTRTPLKPYSVDVAVFCLSL--MGT  180 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l--~~~~v~giDls~--------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l--h~~  180 (196)
                      +.+|||||||+|.++..+  .+.+|+|+|+++              .++.++.+|+..+++++++||+|++..++  +..
T Consensus        39 ~~~vLDlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~  118 (227)
T 1ve3_A           39 RGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEP  118 (227)
T ss_dssp             CCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGGCCH
T ss_pred             CCeEEEEeccCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchHhCCH
Confidence            779999999999998888  345999999998              46889999999988888999999999994  333


Q ss_pred             -CHHHHHHHHHHhccCC
Q psy10644        181 -DLAACIKEANRILKLG  196 (196)
Q Consensus       181 -d~~~~l~e~~rvLkpg  196 (196)
                       ++..++++++++||||
T Consensus       119 ~~~~~~l~~~~~~L~~g  135 (227)
T 1ve3_A          119 LELNQVFKEVRRVLKPS  135 (227)
T ss_dssp             HHHHHHHHHHHHHEEEE
T ss_pred             HHHHHHHHHHHHHcCCC
Confidence             7889999999999986

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.48  E-value=3.7e-14  Score=107.19  Aligned_cols=78  Identities=28%  Similarity=0.316  Sum_probs=67.5

Q ss_pred             CCCCCEEEEEcCCCchhHhhccC--CeEEEEeCCC----------CCceEEEecCCCCCCCCCceeeEeeccccccc-CH
Q psy10644        116 SKGRLVIADLGCGEAKLAAELTQ--HKVHSLDLVA----------LNERVTSCDMTRTPLKPYSVDVAVFCLSLMGT-DL  182 (196)
Q Consensus       116 ~~~~~~ILDlGCG~G~~a~~l~~--~~v~giDls~----------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~~-d~  182 (196)
                      ..++.+|||||||+|.++..+..  .+|+|+|+++          .++.+..+|   +++++++||+|++..++|+. ++
T Consensus        15 ~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~v~~~~~d---~~~~~~~~D~v~~~~~l~~~~~~   91 (170)
T 3i9f_A           15 EGKKGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKEKFDSVITLSDP---KEIPDNSVDFILFANSFHDMDDK   91 (170)
T ss_dssp             SSCCEEEEEETCTTCTTHHHHHTTEEEEEEECSCHHHHHHHHHHCTTSEEESSG---GGSCTTCEEEEEEESCSTTCSCH
T ss_pred             cCCCCeEEEECCCCCHHHHHHHhhcCeEEEEeCCHHHHHHHHHhCCCcEEEeCC---CCCCCCceEEEEEccchhcccCH
Confidence            34578999999999999988832  3999999998          478888888   67888999999999999654 99


Q ss_pred             HHHHHHHHHhccCC
Q psy10644        183 AACIKEANRILKLG  196 (196)
Q Consensus       183 ~~~l~e~~rvLkpg  196 (196)
                      ..++++++|+||||
T Consensus        92 ~~~l~~~~~~L~pg  105 (170)
T 3i9f_A           92 QHVISEVKRILKDD  105 (170)
T ss_dssp             HHHHHHHHHHEEEE
T ss_pred             HHHHHHHHHhcCCC
Confidence            99999999999986

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.48  E-value=4.9e-14  Score=109.42  Aligned_cols=88  Identities=14%  Similarity=0.086  Sum_probs=70.4

Q ss_pred             HHHHHHHhhcCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC--------------CCceEEEecCCCCCCCCCcee
Q psy10644        106 IIIKSIQERESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA--------------LNERVTSCDMTRTPLKPYSVD  169 (196)
Q Consensus       106 ~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~--------------~~~~~~~~d~~~lp~~~~sfD  169 (196)
                      .+.+.+....+  + +|||||||+|.++..+  .+.+|+|+|+++              .++.+..+|+..+++++++||
T Consensus        20 ~l~~~~~~~~~--~-~vLdiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD   96 (202)
T 2kw5_A           20 FLVSVANQIPQ--G-KILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWE   96 (202)
T ss_dssp             SHHHHHHHSCS--S-EEEECCCSCTHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCS
T ss_pred             HHHHHHHhCCC--C-CEEEECCCCCHhHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCcc
Confidence            34444443343  5 9999999999998888  456999999998              267889999998888889999


Q ss_pred             eEeecccccc-cCHHHHHHHHHHhccCC
Q psy10644        170 VAVFCLSLMG-TDLAACIKEANRILKLG  196 (196)
Q Consensus       170 ~Vi~~~~lh~-~d~~~~l~e~~rvLkpg  196 (196)
                      +|+++..... .+...+++++.++||||
T Consensus        97 ~v~~~~~~~~~~~~~~~l~~~~~~L~pg  124 (202)
T 2kw5_A           97 GIVSIFCHLPSSLRQQLYPKVYQGLKPG  124 (202)
T ss_dssp             EEEEECCCCCHHHHHHHHHHHHTTCCSS
T ss_pred             EEEEEhhcCCHHHHHHHHHHHHHhcCCC
Confidence            9998643322 37899999999999997

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.47  E-value=6.1e-14  Score=112.07  Aligned_cols=79  Identities=20%  Similarity=0.273  Sum_probs=67.5

Q ss_pred             CCCEEEEEcCCCchhHhhcc---CCeEEEEeCCC---------------CCceEEEecCCCCCCCCCceeeEeecccccc
Q psy10644        118 GRLVIADLGCGEAKLAAELT---QHKVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDVAVFCLSLMG  179 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l~---~~~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~  179 (196)
                      ++.+|||||||+|.++..+.   ..+|+|+|+++               .++.++.+|+..+++++++||+|++..++|+
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~  158 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGH  158 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGGG
T ss_pred             CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhhh
Confidence            47899999999999998872   34999999998               1367899999888888889999999999965


Q ss_pred             c-C--HHHHHHHHHHhccCC
Q psy10644        180 T-D--LAACIKEANRILKLG  196 (196)
Q Consensus       180 ~-d--~~~~l~e~~rvLkpg  196 (196)
                      . +  ...+|++++|+||||
T Consensus       159 ~~~~~~~~~l~~~~~~Lkpg  178 (241)
T 2ex4_A          159 LTDQHLAEFLRRCKGSLRPN  178 (241)
T ss_dssp             SCHHHHHHHHHHHHHHEEEE
T ss_pred             CCHHHHHHHHHHHHHhcCCC
Confidence            4 5  458999999999986

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.47  E-value=1.5e-13  Score=105.81  Aligned_cols=88  Identities=20%  Similarity=0.234  Sum_probs=73.0

Q ss_pred             HHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC---------------CCceEEEecCCCCCCCCCc
Q psy10644        105 DIIIKSIQERESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA---------------LNERVTSCDMTRTPLKPYS  167 (196)
Q Consensus       105 ~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~---------------~~~~~~~~d~~~lp~~~~s  167 (196)
                      ..+++.+..   .++.+|||||||+|.++..+  .+.+|+|+|+++               .++.+..+|+..+++ +++
T Consensus        22 ~~l~~~~~~---~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~   97 (199)
T 2xvm_A           22 SEVLEAVKV---VKPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF-DRQ   97 (199)
T ss_dssp             HHHHHHTTT---SCSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC-CCC
T ss_pred             HHHHHHhhc---cCCCeEEEEcCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC-CCC
Confidence            344554432   23679999999999998888  467999999998               278899999988888 889


Q ss_pred             eeeEeeccccccc---CHHHHHHHHHHhccCC
Q psy10644        168 VDVAVFCLSLMGT---DLAACIKEANRILKLG  196 (196)
Q Consensus       168 fD~Vi~~~~lh~~---d~~~~l~e~~rvLkpg  196 (196)
                      ||+|++..++|+.   +...++++++++||||
T Consensus        98 ~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~g  129 (199)
T 2xvm_A           98 YDFILSTVVLMFLEAKTIPGLIANMQRCTKPG  129 (199)
T ss_dssp             EEEEEEESCGGGSCGGGHHHHHHHHHHTEEEE
T ss_pred             ceEEEEcchhhhCCHHHHHHHHHHHHHhcCCC
Confidence            9999999999543   7899999999999986

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.47  E-value=9.7e-14  Score=118.86  Aligned_cols=80  Identities=24%  Similarity=0.259  Sum_probs=70.1

Q ss_pred             CCCCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC-----------------------CCceEEEecCCCC------C
Q psy10644        117 KGRLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA-----------------------LNERVTSCDMTRT------P  162 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~-----------------------~~~~~~~~d~~~l------p  162 (196)
                      .++.+|||||||+|.++..+     .+.+|+|+|+|+                       .++.++++|++.+      +
T Consensus        82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~  161 (383)
T 4fsd_A           82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG  161 (383)
T ss_dssp             GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred             CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence            34789999999999987777     355999999997                       2678999999887      8


Q ss_pred             CCCCceeeEeeccccccc-CHHHHHHHHHHhccCC
Q psy10644        163 LKPYSVDVAVFCLSLMGT-DLAACIKEANRILKLG  196 (196)
Q Consensus       163 ~~~~sfD~Vi~~~~lh~~-d~~~~l~e~~rvLkpg  196 (196)
                      +++++||+|++..++|+. ++..+|++++|+||||
T Consensus       162 ~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~Lkpg  196 (383)
T 4fsd_A          162 VPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDG  196 (383)
T ss_dssp             CCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE
T ss_pred             CCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCC
Confidence            999999999999999654 9999999999999996

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.46  E-value=2e-13  Score=111.70  Aligned_cols=79  Identities=20%  Similarity=0.171  Sum_probs=67.7

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc---cCCeEEEEeCCC----------------CCceEEEecCCCCCCCCCceeeEeecc
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL---TQHKVHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAVFCL  175 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l---~~~~v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~  175 (196)
                      ...++.+|||||||+|.++..+   .+.+|+|+|+|+                .++.+..+|+..+|   ++||+|++..
T Consensus        61 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~fD~v~~~~  137 (287)
T 1kpg_A           61 GLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD---EPVDRIVSIG  137 (287)
T ss_dssp             TCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---CCCSEEEEES
T ss_pred             CCCCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC---CCeeEEEEeC
Confidence            3445789999999999998877   367999999997                26788999997765   7899999999


Q ss_pred             cc-cc--cCHHHHHHHHHHhccCC
Q psy10644        176 SL-MG--TDLAACIKEANRILKLG  196 (196)
Q Consensus       176 ~l-h~--~d~~~~l~e~~rvLkpg  196 (196)
                      ++ |.  .++..+|++++|+||||
T Consensus       138 ~l~~~~~~~~~~~l~~~~~~Lkpg  161 (287)
T 1kpg_A          138 AFEHFGHERYDAFFSLAHRLLPAD  161 (287)
T ss_dssp             CGGGTCTTTHHHHHHHHHHHSCTT
T ss_pred             chhhcChHHHHHHHHHHHHhcCCC
Confidence            99 44  37899999999999997

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.46  E-value=3.9e-14  Score=115.22  Aligned_cols=81  Identities=20%  Similarity=0.244  Sum_probs=63.0

Q ss_pred             CCCCCEEEEEcCCCchhHhhc--cCC-eEEEEeCCCC--------------C----------------------------
Q psy10644        116 SKGRLVIADLGCGEAKLAAEL--TQH-KVHSLDLVAL--------------N----------------------------  150 (196)
Q Consensus       116 ~~~~~~ILDlGCG~G~~a~~l--~~~-~v~giDls~~--------------~----------------------------  150 (196)
                      ..++.+|||||||+|.++..+  .+. +|+|+|+|+.              .                            
T Consensus        53 ~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~  132 (263)
T 2a14_A           53 GLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR  132 (263)
T ss_dssp             SCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred             CCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHH
Confidence            345789999999999877665  343 7999999971              0                            


Q ss_pred             --c-eEEEecCCC-CCCC---CCceeeEeecccccc-----cCHHHHHHHHHHhccCC
Q psy10644        151 --E-RVTSCDMTR-TPLK---PYSVDVAVFCLSLMG-----TDLAACIKEANRILKLG  196 (196)
Q Consensus       151 --~-~~~~~d~~~-lp~~---~~sfD~Vi~~~~lh~-----~d~~~~l~e~~rvLkpg  196 (196)
                        + .+.++|+.. .|++   .++||+|+++++||+     .++..++++++|+||||
T Consensus       133 ~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPG  190 (263)
T 2a14_A          133 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPG  190 (263)
T ss_dssp             HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEE
T ss_pred             hhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCC
Confidence              1 278899876 3443   579999999999964     25678999999999997

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.46  E-value=1.6e-13  Score=112.23  Aligned_cols=80  Identities=19%  Similarity=0.191  Sum_probs=68.2

Q ss_pred             CCCCEEEEEcCCCchhHhhc--cC-CeEEEEeCCC----------------CCceEEEecCCCCCC-CCCceeeEeeccc
Q psy10644        117 KGRLVIADLGCGEAKLAAEL--TQ-HKVHSLDLVA----------------LNERVTSCDMTRTPL-KPYSVDVAVFCLS  176 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l--~~-~~v~giDls~----------------~~~~~~~~d~~~lp~-~~~sfD~Vi~~~~  176 (196)
                      .++.+|||||||+|.++..+  .+ .+|+|+|+++                .++.++++|+..+++ ++++||+|++..+
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~  142 (298)
T 1ri5_A           63 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFS  142 (298)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESC
T ss_pred             CCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECch
Confidence            34789999999999988777  34 4999999998                147889999998888 6889999999999


Q ss_pred             ccc-----cCHHHHHHHHHHhccCC
Q psy10644        177 LMG-----TDLAACIKEANRILKLG  196 (196)
Q Consensus       177 lh~-----~d~~~~l~e~~rvLkpg  196 (196)
                      +|+     .++..+|++++|+||||
T Consensus       143 l~~~~~~~~~~~~~l~~~~~~Lkpg  167 (298)
T 1ri5_A          143 FHYAFSTSESLDIAQRNIARHLRPG  167 (298)
T ss_dssp             GGGGGSSHHHHHHHHHHHHHTEEEE
T ss_pred             hhhhcCCHHHHHHHHHHHHHhcCCC
Confidence            965     27789999999999986

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.46  E-value=1e-13  Score=110.07  Aligned_cols=75  Identities=13%  Similarity=0.136  Sum_probs=66.0

Q ss_pred             CCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC----------CCceEEEecC-CCCCCC-CCceeeEeecccccccCH
Q psy10644        117 KGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA----------LNERVTSCDM-TRTPLK-PYSVDVAVFCLSLMGTDL  182 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~----------~~~~~~~~d~-~~lp~~-~~sfD~Vi~~~~lh~~d~  182 (196)
                      .++.+|||||||+|.++..+  .+.+|+|+|+++          .++.++++|+ +.+|++ +++||+|++.     .++
T Consensus        47 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~-----~~~  121 (226)
T 3m33_A           47 TPQTRVLEAGCGHGPDAARFGPQAARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSR-----RGP  121 (226)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEE-----SCC
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeC-----CCH
Confidence            45789999999999999888  467999999998          4789999999 678888 8999999987     467


Q ss_pred             HHHHHHHHHhccCC
Q psy10644        183 AACIKEANRILKLG  196 (196)
Q Consensus       183 ~~~l~e~~rvLkpg  196 (196)
                      ..++++++++||||
T Consensus       122 ~~~l~~~~~~Lkpg  135 (226)
T 3m33_A          122 TSVILRLPELAAPD  135 (226)
T ss_dssp             SGGGGGHHHHEEEE
T ss_pred             HHHHHHHHHHcCCC
Confidence            88899999999996

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.46  E-value=6.8e-14  Score=115.21  Aligned_cols=80  Identities=15%  Similarity=0.146  Sum_probs=59.7

Q ss_pred             CCCCEEEEEcCCCchhHhh----c----cCCeE--EEEeCCCC----------------CceEE--EecCCCCC------
Q psy10644        117 KGRLVIADLGCGEAKLAAE----L----TQHKV--HSLDLVAL----------------NERVT--SCDMTRTP------  162 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~----l----~~~~v--~giDls~~----------------~~~~~--~~d~~~lp------  162 (196)
                      .++.+|||||||+|.++..    +    .+..|  +|+|+|+.                ++.+.  .+++++++      
T Consensus        51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  130 (292)
T 2aot_A           51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK  130 (292)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence            3467999999999976432    2    24444  99999971                33333  33444333      


Q ss_pred             CCCCceeeEeeccccccc-CHHHHHHHHHHhccCC
Q psy10644        163 LKPYSVDVAVFCLSLMGT-DLAACIKEANRILKLG  196 (196)
Q Consensus       163 ~~~~sfD~Vi~~~~lh~~-d~~~~l~e~~rvLkpg  196 (196)
                      +++++||+|++..+||+. |+..+|++++|+||||
T Consensus       131 ~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~Lkpg  165 (292)
T 2aot_A          131 KELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTN  165 (292)
T ss_dssp             TCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEE
T ss_pred             cCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCC
Confidence            568899999999999766 9999999999999997

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.45  E-value=1.2e-13  Score=113.49  Aligned_cols=79  Identities=20%  Similarity=0.362  Sum_probs=62.5

Q ss_pred             CCCEEEEEcCCCchhHhhc---cCCeEEEEeCCCCC--------------------------------------------
Q psy10644        118 GRLVIADLGCGEAKLAAEL---TQHKVHSLDLVALN--------------------------------------------  150 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l---~~~~v~giDls~~~--------------------------------------------  150 (196)
                      ++.+|||||||+|.++..+   .+.+|+|+|+|+..                                            
T Consensus        71 ~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  150 (289)
T 2g72_A           71 SGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRAR  150 (289)
T ss_dssp             CCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHH
T ss_pred             CCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHhh
Confidence            4689999999999965444   35699999999811                                            


Q ss_pred             -ceEEEecCCC-CCC-----CCCceeeEeecccccc----c-CHHHHHHHHHHhccCC
Q psy10644        151 -ERVTSCDMTR-TPL-----KPYSVDVAVFCLSLMG----T-DLAACIKEANRILKLG  196 (196)
Q Consensus       151 -~~~~~~d~~~-lp~-----~~~sfD~Vi~~~~lh~----~-d~~~~l~e~~rvLkpg  196 (196)
                       +.++.+|+.. +|+     ++++||+|+++.+||+    . ++..+|++++|+||||
T Consensus       151 ~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpG  208 (289)
T 2g72_A          151 VKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPG  208 (289)
T ss_dssp             EEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEE
T ss_pred             hceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCC
Confidence             2355568876 664     3567999999999965    3 7899999999999997

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.45  E-value=1.3e-13  Score=108.30  Aligned_cols=80  Identities=21%  Similarity=0.304  Sum_probs=68.8

Q ss_pred             CCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC--------CCceEEEecCCC--CCCCCCceeeEeecccccc-cCHH
Q psy10644        117 KGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA--------LNERVTSCDMTR--TPLKPYSVDVAVFCLSLMG-TDLA  183 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~--------~~~~~~~~d~~~--lp~~~~sfD~Vi~~~~lh~-~d~~  183 (196)
                      .++.+|||||||+|.++..+  .+.+|+|+|+++        ....+..+|+..  .++++++||+|++..++|+ .++.
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~~l~~~~~~~  110 (230)
T 3cc8_A           31 KEWKEVLDIGCSSGALGAAIKENGTRVSGIEAFPEAAEQAKEKLDHVVLGDIETMDMPYEEEQFDCVIFGDVLEHLFDPW  110 (230)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHTTTCEEEEEESSHHHHHHHHTTSSEEEESCTTTCCCCSCTTCEEEEEEESCGGGSSCHH
T ss_pred             cCCCcEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhCCcEEEcchhhcCCCCCCCccCEEEECChhhhcCCHH
Confidence            34789999999999998888  357999999998        234788899876  6778899999999999954 4999


Q ss_pred             HHHHHHHHhccCC
Q psy10644        184 ACIKEANRILKLG  196 (196)
Q Consensus       184 ~~l~e~~rvLkpg  196 (196)
                      .++++++++||||
T Consensus       111 ~~l~~~~~~L~~g  123 (230)
T 3cc8_A          111 AVIEKVKPYIKQN  123 (230)
T ss_dssp             HHHHHTGGGEEEE
T ss_pred             HHHHHHHHHcCCC
Confidence            9999999999986

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.44  E-value=2.7e-13  Score=111.97  Aligned_cols=80  Identities=16%  Similarity=0.083  Sum_probs=67.9

Q ss_pred             hcCCCCCEEEEEcCCCchhHhhc---cCCeEEEEeCCC----------------CCceEEEecCCCCCCCCCceeeEeec
Q psy10644        114 RESKGRLVIADLGCGEAKLAAEL---TQHKVHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAVFC  174 (196)
Q Consensus       114 ~~~~~~~~ILDlGCG~G~~a~~l---~~~~v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~  174 (196)
                      ....++.+|||||||+|.++..+   .+.+|+|+|+|+                .++.+..+|+.++   +++||+|++.
T Consensus        68 ~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~fD~v~~~  144 (302)
T 3hem_A           68 LNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF---DEPVDRIVSL  144 (302)
T ss_dssp             TCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC---CCCCSEEEEE
T ss_pred             cCCCCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc---CCCccEEEEc
Confidence            34456789999999999998888   268999999998                1688999999776   7899999999


Q ss_pred             cccc-ccCH---------HHHHHHHHHhccCC
Q psy10644        175 LSLM-GTDL---------AACIKEANRILKLG  196 (196)
Q Consensus       175 ~~lh-~~d~---------~~~l~e~~rvLkpg  196 (196)
                      .++| ..++         ..++++++|+||||
T Consensus       145 ~~~~~~~d~~~~~~~~~~~~~l~~~~~~Lkpg  176 (302)
T 3hem_A          145 GAFEHFADGAGDAGFERYDTFFKKFYNLTPDD  176 (302)
T ss_dssp             SCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTT
T ss_pred             chHHhcCccccccchhHHHHHHHHHHHhcCCC
Confidence            9995 4244         79999999999997

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.44  E-value=5.2e-13  Score=100.22  Aligned_cols=80  Identities=14%  Similarity=0.190  Sum_probs=67.4

Q ss_pred             CCCCEEEEEcCCCchhHhhc--c---CCeEEEEeCCC----CCceEEEecCCCCC--------CCCCceeeEeecccccc
Q psy10644        117 KGRLVIADLGCGEAKLAAEL--T---QHKVHSLDLVA----LNERVTSCDMTRTP--------LKPYSVDVAVFCLSLMG  179 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l--~---~~~v~giDls~----~~~~~~~~d~~~lp--------~~~~sfD~Vi~~~~lh~  179 (196)
                      .++.+|||+|||+|.++..+  .   +.+|+|+|+++    .++.+..+|+...+        +++++||+|++...+|+
T Consensus        21 ~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~i~~~~~~~~  100 (180)
T 1ej0_A           21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDMAPNM  100 (180)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCCCTTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEECCCCCC
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECccccccCcEEEEEcccccchhhhhhhccCCCCceeEEEECCCccc
Confidence            45779999999999998877  2   47999999998    56788999998876        77889999999888864


Q ss_pred             c-CH-----------HHHHHHHHHhccCC
Q psy10644        180 T-DL-----------AACIKEANRILKLG  196 (196)
Q Consensus       180 ~-d~-----------~~~l~e~~rvLkpg  196 (196)
                      . +.           ..+++++.++||||
T Consensus       101 ~~~~~~~~~~~~~~~~~~l~~~~~~L~~g  129 (180)
T 1ej0_A          101 SGTPAVDIPRAMYLVELALEMCRDVLAPG  129 (180)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHHHHHEEEE
T ss_pred             cCCCccchHHHHHHHHHHHHHHHHHcCCC
Confidence            4 44           68999999999986

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.44  E-value=5.1e-13  Score=103.52  Aligned_cols=80  Identities=15%  Similarity=0.242  Sum_probs=65.3

Q ss_pred             CCCCEEEEEcCCCchhHhhc----c--CCeEEEEeCCC----CCceEEEecCCCCC------------------------
Q psy10644        117 KGRLVIADLGCGEAKLAAEL----T--QHKVHSLDLVA----LNERVTSCDMTRTP------------------------  162 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l----~--~~~v~giDls~----~~~~~~~~d~~~lp------------------------  162 (196)
                      .++.+|||||||+|.++..+    .  +.+|+|+|+++    .++.++++|+...+                        
T Consensus        21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~~~~~v~~~~~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  100 (201)
T 2plw_A           21 KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMDPIPNVYFIQGEIGKDNMNNIKNINYIDNMNNNSVDYKLKE  100 (201)
T ss_dssp             CTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCCCCTTCEEEECCTTTTSSCCC-----------CHHHHHHHH
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccCCCCCceEEEccccchhhhhhccccccccccchhhHHHHHh
Confidence            34789999999999998877    2  47999999998    36889999998876                        


Q ss_pred             -CCCCceeeEeecccccc-----cCHH-------HHHHHHHHhccCC
Q psy10644        163 -LKPYSVDVAVFCLSLMG-----TDLA-------ACIKEANRILKLG  196 (196)
Q Consensus       163 -~~~~sfD~Vi~~~~lh~-----~d~~-------~~l~e~~rvLkpg  196 (196)
                       +++++||+|++..++|+     .+..       .++++++++||||
T Consensus       101 ~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lkpg  147 (201)
T 2plw_A          101 ILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIG  147 (201)
T ss_dssp             HHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEE
T ss_pred             hcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCC
Confidence             56789999999887754     2322       3789999999996

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.43  E-value=3e-13  Score=103.65  Aligned_cols=80  Identities=18%  Similarity=0.181  Sum_probs=62.9

Q ss_pred             CCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC---------------CCceEEEecCCCCC-CCCCceeeEeecccc-
Q psy10644        117 KGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA---------------LNERVTSCDMTRTP-LKPYSVDVAVFCLSL-  177 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~---------------~~~~~~~~d~~~lp-~~~~sfD~Vi~~~~l-  177 (196)
                      .++.+|||+|||+|.++..+  .+.+|+|+|+++               .++.++..+.+.++ +.+++||+|++.... 
T Consensus        21 ~~~~~vLDiGcG~G~~~~~la~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~~~~  100 (185)
T 3mti_A           21 DDESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNLGYL  100 (185)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEEC--
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeCCCC
Confidence            45789999999999999888  457999999998               36788887776643 457889999887433 


Q ss_pred             cc---------cCHHHHHHHHHHhccCC
Q psy10644        178 MG---------TDLAACIKEANRILKLG  196 (196)
Q Consensus       178 h~---------~d~~~~l~e~~rvLkpg  196 (196)
                      +.         .+...+++++.|+||||
T Consensus       101 ~~~~~~~~~~~~~~~~~l~~~~~~Lkpg  128 (185)
T 3mti_A          101 PSADKSVITKPHTTLEAIEKILDRLEVG  128 (185)
T ss_dssp             ---------CHHHHHHHHHHHHHHEEEE
T ss_pred             CCcchhcccChhhHHHHHHHHHHhcCCC
Confidence            32         25568899999999996

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.43  E-value=1.1e-13  Score=113.07  Aligned_cols=113  Identities=12%  Similarity=0.035  Sum_probs=75.4

Q ss_pred             hhCHHHHHHHHHHHHhhhh--cCCCChHHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCCC-----
Q psy10644         79 TEDRESFEAYHEGFKKQVT--QWPINPVDIIIKSIQERESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVAL-----  149 (196)
Q Consensus        79 ~~~~~~f~~y~~~y~~~~~--~w~~~~~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~~-----  149 (196)
                      ....+.|+.....|.+...  .|+ .....+++.+   ...++.+|||||||+|.++..|  .+.+|+|+|+|+.     
T Consensus         8 ~s~a~~wd~~a~~f~~~~~~~~~~-~~~~~il~~l---~l~~g~~VLDlGcGtG~~a~~La~~g~~V~gvD~S~~ml~~A   83 (261)
T 3iv6_A            8 NSKAEAWELIGNQFWTIGRVAARP-SDRENDIFLE---NIVPGSTVAVIGASTRFLIEKALERGASVTVFDFSQRMCDDL   83 (261)
T ss_dssp             CTTHHHHHTTTTHHHHTSCGGGSC-CHHHHHHHTT---TCCTTCEEEEECTTCHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             hhhhhHHHHHHHHHHHHhhccccH-HHHHHHHHhc---CCCCcCEEEEEeCcchHHHHHHHhcCCEEEEEECCHHHHHHH
Confidence            3444555554444443221  122 2244444443   4445789999999999999888  5779999999981     


Q ss_pred             ----CceEEEecCCCCCC-----CCCceeeEeecccccc-c--CHHHHHHHHHHhccCC
Q psy10644        150 ----NERVTSCDMTRTPL-----KPYSVDVAVFCLSLMG-T--DLAACIKEANRILKLG  196 (196)
Q Consensus       150 ----~~~~~~~d~~~lp~-----~~~sfD~Vi~~~~lh~-~--d~~~~l~e~~rvLkpg  196 (196)
                          ...++..++..++.     .+++||+|+++.++|+ .  +...+++++.++| ||
T Consensus        84 r~~~~~~~v~~~~~~~~~~~~~~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PG  141 (261)
T 3iv6_A           84 AEALADRCVTIDLLDITAEIPKELAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GS  141 (261)
T ss_dssp             HHHTSSSCCEEEECCTTSCCCGGGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TT
T ss_pred             HHHHHhccceeeeeecccccccccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cC
Confidence                11134555554443     2578999999999954 3  6778999999999 87

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.43  E-value=4e-13  Score=106.70  Aligned_cols=91  Identities=25%  Similarity=0.259  Sum_probs=71.4

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhccC-CeEEEEeCCC--------------CCceEEEecCCCCCCCCCce
Q psy10644        104 VDIIIKSIQERESKGRLVIADLGCGEAKLAAELTQ-HKVHSLDLVA--------------LNERVTSCDMTRTPLKPYSV  168 (196)
Q Consensus       104 ~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l~~-~~v~giDls~--------------~~~~~~~~d~~~lp~~~~sf  168 (196)
                      ...+.+.+.... .++.+|||||||+|.++..+.. .+|+|+|+++              .++.++.+|+..++++ ++|
T Consensus        20 ~~~~~~~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-~~f   97 (243)
T 3d2l_A           20 YPEWVAWVLEQV-EPGKRIADIGCGTGTATLLLADHYEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELP-EPV   97 (243)
T ss_dssp             HHHHHHHHHHHS-CTTCEEEEESCTTCHHHHHHTTTSEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCS-SCE
T ss_pred             HHHHHHHHHHHc-CCCCeEEEecCCCCHHHHHHhhCCeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCC-CCc
Confidence            344444444332 2367999999999999888832 7999999998              3688999999888876 789


Q ss_pred             eeEeecc-ccccc----CHHHHHHHHHHhccCC
Q psy10644        169 DVAVFCL-SLMGT----DLAACIKEANRILKLG  196 (196)
Q Consensus       169 D~Vi~~~-~lh~~----d~~~~l~e~~rvLkpg  196 (196)
                      |+|++.. ++|+.    +...++++++++||||
T Consensus        98 D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pg  130 (243)
T 3d2l_A           98 DAITILCDSLNYLQTEADVKQTFDSAARLLTDG  130 (243)
T ss_dssp             EEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEE
T ss_pred             CEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCC
Confidence            9999986 78432    6778999999999986

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.42  E-value=4.2e-13  Score=109.80  Aligned_cols=88  Identities=20%  Similarity=0.251  Sum_probs=73.3

Q ss_pred             HHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC--------------CCceEEEecCCCCCCCCCce
Q psy10644        105 DIIIKSIQERESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA--------------LNERVTSCDMTRTPLKPYSV  168 (196)
Q Consensus       105 ~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~--------------~~~~~~~~d~~~lp~~~~sf  168 (196)
                      ..+++.+...   ++.+|||||||+|.++..+  .+.+|+|+|+++              .++.++.+|+..+++ +++|
T Consensus       110 ~~~~~~~~~~---~~~~vLD~GcG~G~~~~~l~~~g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~-~~~f  185 (286)
T 3m70_A          110 GDVVDAAKII---SPCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANI-QENY  185 (286)
T ss_dssp             HHHHHHHHHS---CSCEEEEESCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCC-CSCE
T ss_pred             HHHHHHhhcc---CCCcEEEECCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccc-cCCc
Confidence            4455555432   3789999999999999888  567999999998              178899999988877 7899


Q ss_pred             eeEeeccccccc---CHHHHHHHHHHhccCC
Q psy10644        169 DVAVFCLSLMGT---DLAACIKEANRILKLG  196 (196)
Q Consensus       169 D~Vi~~~~lh~~---d~~~~l~e~~rvLkpg  196 (196)
                      |+|++..++|+.   +...++++++++||||
T Consensus       186 D~i~~~~~~~~~~~~~~~~~l~~~~~~Lkpg  216 (286)
T 3m70_A          186 DFIVSTVVFMFLNRERVPSIIKNMKEHTNVG  216 (286)
T ss_dssp             EEEEECSSGGGSCGGGHHHHHHHHHHTEEEE
T ss_pred             cEEEEccchhhCCHHHHHHHHHHHHHhcCCC
Confidence            999999999644   5679999999999986

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.42  E-value=5.1e-13  Score=110.15  Aligned_cols=77  Identities=18%  Similarity=0.170  Sum_probs=65.3

Q ss_pred             CCEEEEEcCCCchhHhhc--cCCeEEEEeCCC------------------CCceEEEecCCCCCCCCCceeeEeec-ccc
Q psy10644        119 RLVIADLGCGEAKLAAEL--TQHKVHSLDLVA------------------LNERVTSCDMTRTPLKPYSVDVAVFC-LSL  177 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l--~~~~v~giDls~------------------~~~~~~~~d~~~lp~~~~sfD~Vi~~-~~l  177 (196)
                      +.+|||||||+|.++..+  .+.+|+|+|+|+                  .++.++++|+..+++ +++||+|++. .++
T Consensus        83 ~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~~~~~~  161 (299)
T 3g2m_A           83 SGPVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL-DKRFGTVVISSGSI  161 (299)
T ss_dssp             CSCEEEETCTTTTTHHHHHTTTCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC-SCCEEEEEECHHHH
T ss_pred             CCcEEEEeccCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc-CCCcCEEEECCccc
Confidence            459999999999999888  456999999998                  247899999999887 7899998865 455


Q ss_pred             cccC---HHHHHHHHHHhccCC
Q psy10644        178 MGTD---LAACIKEANRILKLG  196 (196)
Q Consensus       178 h~~d---~~~~l~e~~rvLkpg  196 (196)
                      |+.+   ...+|++++++||||
T Consensus       162 ~~~~~~~~~~~l~~~~~~L~pg  183 (299)
T 3g2m_A          162 NELDEADRRGLYASVREHLEPG  183 (299)
T ss_dssp             TTSCHHHHHHHHHHHHHHEEEE
T ss_pred             ccCCHHHHHHHHHHHHHHcCCC
Confidence            6553   689999999999996

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.42  E-value=3.9e-13  Score=111.33  Aligned_cols=80  Identities=16%  Similarity=0.055  Sum_probs=68.2

Q ss_pred             CCCCCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC----------------CCceEEEecCCCCCCCCCceeeEeec
Q psy10644        116 SKGRLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAVFC  174 (196)
Q Consensus       116 ~~~~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~  174 (196)
                      ..++.+|||||||+|.++..+     .+.+|+|+|+++                .++.++++|+..++++ ++||+|++.
T Consensus       116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~  194 (305)
T 3ocj_A          116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTR-EGYDLLTSN  194 (305)
T ss_dssp             CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCC-SCEEEEECC
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCcc-CCeEEEEEC
Confidence            345789999999999998887     355999999998                1388999999999887 999999999


Q ss_pred             cccccc-CHHH---HHHHHHHhccCC
Q psy10644        175 LSLMGT-DLAA---CIKEANRILKLG  196 (196)
Q Consensus       175 ~~lh~~-d~~~---~l~e~~rvLkpg  196 (196)
                      .++|+. ++..   ++++++++||||
T Consensus       195 ~~~~~~~~~~~~~~~l~~~~~~Lkpg  220 (305)
T 3ocj_A          195 GLNIYEPDDARVTELYRRFWQALKPG  220 (305)
T ss_dssp             SSGGGCCCHHHHHHHHHHHHHHEEEE
T ss_pred             ChhhhcCCHHHHHHHHHHHHHhcCCC
Confidence            999654 6665   799999999996

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.41  E-value=3.4e-13  Score=107.76  Aligned_cols=80  Identities=14%  Similarity=0.040  Sum_probs=67.0

Q ss_pred             CCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC------------CCceEEEecCCCCCCCC-----CceeeEeecccc
Q psy10644        117 KGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA------------LNERVTSCDMTRTPLKP-----YSVDVAVFCLSL  177 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~------------~~~~~~~~d~~~lp~~~-----~sfD~Vi~~~~l  177 (196)
                      .++.+|||||||+|.++..+  .+.+|+|+|+|+            .++.++++|+.++++..     ..||+|++..++
T Consensus        55 ~~~~~vLD~GcG~G~~~~~la~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~~~  134 (245)
T 3ggd_A           55 NPELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMRTGF  134 (245)
T ss_dssp             CTTSCEEEETCTTSHHHHHHHHHSSCEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEESSS
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHhCCCEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEcchh
Confidence            45789999999999999888  445999999998            37899999998865432     248999999999


Q ss_pred             ccc---CHHHHHHHHHHhccCC
Q psy10644        178 MGT---DLAACIKEANRILKLG  196 (196)
Q Consensus       178 h~~---d~~~~l~e~~rvLkpg  196 (196)
                      |+.   +...++++++++||||
T Consensus       135 ~~~~~~~~~~~l~~~~~~Lkpg  156 (245)
T 3ggd_A          135 HHIPVEKRELLGQSLRILLGKQ  156 (245)
T ss_dssp             TTSCGGGHHHHHHHHHHHHTTT
T ss_pred             hcCCHHHHHHHHHHHHHHcCCC
Confidence            643   6889999999999997

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.41  E-value=4.2e-13  Score=107.94  Aligned_cols=80  Identities=19%  Similarity=0.243  Sum_probs=66.4

Q ss_pred             CCCCEEEEEcCCCchhHhhc--cCC-eEEEEeCCC------------CC-------------------------------
Q psy10644        117 KGRLVIADLGCGEAKLAAEL--TQH-KVHSLDLVA------------LN-------------------------------  150 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l--~~~-~v~giDls~------------~~-------------------------------  150 (196)
                      .++.+|||||||+|.++..+  .+. +|+|+|+|+            .+                               
T Consensus        55 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  134 (265)
T 2i62_A           55 VKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRR  134 (265)
T ss_dssp             CCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHH
T ss_pred             cCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhh
Confidence            45679999999999998887  344 899999998            11                               


Q ss_pred             -c-eEEEecCCCCC-CCC---CceeeEeeccccc----cc-CHHHHHHHHHHhccCC
Q psy10644        151 -E-RVTSCDMTRTP-LKP---YSVDVAVFCLSLM----GT-DLAACIKEANRILKLG  196 (196)
Q Consensus       151 -~-~~~~~d~~~lp-~~~---~sfD~Vi~~~~lh----~~-d~~~~l~e~~rvLkpg  196 (196)
                       + .+..+|+...+ +++   ++||+|++..++|    .. ++..+|++++|+||||
T Consensus       135 ~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~Lkpg  191 (265)
T 2i62_A          135 AIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPG  191 (265)
T ss_dssp             HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEE
T ss_pred             hheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCC
Confidence             6 88999997753 355   8999999999997    43 7889999999999996

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.40  E-value=8.5e-13  Score=109.59  Aligned_cols=79  Identities=18%  Similarity=0.159  Sum_probs=67.6

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc--c-CCeEEEEeCCC----------------CCceEEEecCCCCCCCCCceeeEeecc
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL--T-QHKVHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAVFCL  175 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l--~-~~~v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~  175 (196)
                      ...++.+|||||||+|.++..+  . +.+|+|+|+|+                .++.+..+|+.++|   ++||+|++..
T Consensus        87 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~fD~v~~~~  163 (318)
T 2fk8_A           87 DLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA---EPVDRIVSIE  163 (318)
T ss_dssp             CCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC---CCCSEEEEES
T ss_pred             CCCCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC---CCcCEEEEeC
Confidence            4455789999999999998888  2 77999999998                24788999987775   7899999999


Q ss_pred             ccc-c--cCHHHHHHHHHHhccCC
Q psy10644        176 SLM-G--TDLAACIKEANRILKLG  196 (196)
Q Consensus       176 ~lh-~--~d~~~~l~e~~rvLkpg  196 (196)
                      ++| .  .++..+++++.|+||||
T Consensus       164 ~l~~~~~~~~~~~l~~~~~~Lkpg  187 (318)
T 2fk8_A          164 AFEHFGHENYDDFFKRCFNIMPAD  187 (318)
T ss_dssp             CGGGTCGGGHHHHHHHHHHHSCTT
T ss_pred             hHHhcCHHHHHHHHHHHHHhcCCC
Confidence            995 4  38899999999999997

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.39  E-value=5.1e-13  Score=110.28  Aligned_cols=79  Identities=18%  Similarity=0.190  Sum_probs=65.9

Q ss_pred             CCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC---------------------------------------------
Q psy10644        118 GRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA---------------------------------------------  148 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~---------------------------------------------  148 (196)
                      ++.+|||||||+|.++..+    .+.+|+|+|+++                                             
T Consensus        46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (292)
T 3g07_A           46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC  125 (292)
T ss_dssp             TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred             CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence            3679999999999998877    357999999987                                             


Q ss_pred             ----------------------------CCceEEEecCCCCC-----CCCCceeeEeeccccccc-------CHHHHHHH
Q psy10644        149 ----------------------------LNERVTSCDMTRTP-----LKPYSVDVAVFCLSLMGT-------DLAACIKE  188 (196)
Q Consensus       149 ----------------------------~~~~~~~~d~~~lp-----~~~~sfD~Vi~~~~lh~~-------d~~~~l~e  188 (196)
                                                  .++.+.++|+...+     +.+++||+|+|..++++.       ++..+|++
T Consensus       126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~  205 (292)
T 3g07_A          126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRR  205 (292)
T ss_dssp             ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHH
Confidence                                        15788888886543     568899999999998332       78899999


Q ss_pred             HHHhccCC
Q psy10644        189 ANRILKLG  196 (196)
Q Consensus       189 ~~rvLkpg  196 (196)
                      ++++||||
T Consensus       206 ~~~~LkpG  213 (292)
T 3g07_A          206 IYRHLRPG  213 (292)
T ss_dssp             HHHHEEEE
T ss_pred             HHHHhCCC
Confidence            99999996

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.39  E-value=1.6e-12  Score=105.40  Aligned_cols=82  Identities=21%  Similarity=0.203  Sum_probs=65.6

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc--c-C--CeEEEEeCCCC----------------------CceEEEec---CCCCCCC
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL--T-Q--HKVHSLDLVAL----------------------NERVTSCD---MTRTPLK  164 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l--~-~--~~v~giDls~~----------------------~~~~~~~d---~~~lp~~  164 (196)
                      ...++.+|||||||+|.++..+  . +  .+|+|+|+|+.                      ++.+..+|   ...+|++
T Consensus        40 ~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  119 (275)
T 3bkx_A           40 QVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIA  119 (275)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGGGT
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCCCC
Confidence            4455789999999999998887  2 3  79999999873                      57888888   4566788


Q ss_pred             CCceeeEeeccccccc-CHHHHHHHHHHhccCC
Q psy10644        165 PYSVDVAVFCLSLMGT-DLAACIKEANRILKLG  196 (196)
Q Consensus       165 ~~sfD~Vi~~~~lh~~-d~~~~l~e~~rvLkpg  196 (196)
                      +++||+|++..++|+. ++..+++.+.++++||
T Consensus       120 ~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~g  152 (275)
T 3bkx_A          120 DQHFDRVVLAHSLWYFASANALALLFKNMAAVC  152 (275)
T ss_dssp             TCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTC
T ss_pred             CCCEEEEEEccchhhCCCHHHHHHHHHHHhCCC
Confidence            8999999999999655 8887777777777755

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=99.39  E-value=3.9e-13  Score=115.61  Aligned_cols=112  Identities=9%  Similarity=0.141  Sum_probs=78.2

Q ss_pred             HHHHHHHHHHHHhhhhcCC-CChH-HHHHHHHHhhcCCCCCEEEEEcCC------CchhHhhc-----cCCeEEEEeCCC
Q psy10644         82 RESFEAYHEGFKKQVTQWP-INPV-DIIIKSIQERESKGRLVIADLGCG------EAKLAAEL-----TQHKVHSLDLVA  148 (196)
Q Consensus        82 ~~~f~~y~~~y~~~~~~w~-~~~~-~~~~~~l~~~~~~~~~~ILDlGCG------~G~~a~~l-----~~~~v~giDls~  148 (196)
                      ...|+.....|...  +|. ...+ ..+-..+.... .+..+|||||||      +|..+..+     ++.+|+|+|+++
T Consensus       181 ~~~fd~lA~~Y~tD--K~~~~h~y~~~Ye~lL~~l~-~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp  257 (419)
T 3sso_A          181 KPDLSELSSRYFTP--KFGFLHWFTPHYDRHFRDYR-NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMD  257 (419)
T ss_dssp             CCCHHHHHHHTTCT--TBSSSCBCHHHHHHHHGGGT-TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSC
T ss_pred             CccHHHHHHHhCCC--cccccchHHHHHHHHHHhhc-CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCH
Confidence            33566666666532  232 1112 23333343332 346799999999      66544433     467999999998


Q ss_pred             ------CCceEEEecCCCCCCC------CCceeeEeecccccccCHHHHHHHHHHhccCC
Q psy10644        149 ------LNERVTSCDMTRTPLK------PYSVDVAVFCLSLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       149 ------~~~~~~~~d~~~lp~~------~~sfD~Vi~~~~lh~~d~~~~l~e~~rvLkpg  196 (196)
                            .++.++++|+.++|+.      +++||+|++..+.+..++..+|++++|+||||
T Consensus       258 ~m~~~~~rI~fv~GDa~dlpf~~~l~~~d~sFDlVisdgsH~~~d~~~aL~el~rvLKPG  317 (419)
T 3sso_A          258 KSHVDELRIRTIQGDQNDAEFLDRIARRYGPFDIVIDDGSHINAHVRTSFAALFPHVRPG  317 (419)
T ss_dssp             CGGGCBTTEEEEECCTTCHHHHHHHHHHHCCEEEEEECSCCCHHHHHHHHHHHGGGEEEE
T ss_pred             HHhhcCCCcEEEEecccccchhhhhhcccCCccEEEECCcccchhHHHHHHHHHHhcCCC
Confidence                  4789999999998877      78999999865434458999999999999997

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.39  E-value=3.2e-13  Score=112.45  Aligned_cols=79  Identities=9%  Similarity=0.066  Sum_probs=61.3

Q ss_pred             CCCEEEEEcCCCchhHhh-c--cCCeEEEEeCCC------------CC---------ceEEEecC------CCC--CCCC
Q psy10644        118 GRLVIADLGCGEAKLAAE-L--TQHKVHSLDLVA------------LN---------ERVTSCDM------TRT--PLKP  165 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~-l--~~~~v~giDls~------------~~---------~~~~~~d~------~~l--p~~~  165 (196)
                      ++.+|||||||+|..+.. +  .+.+|+|+|+|+            ..         +.+.+.|+      +++  ++++
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~  127 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYF  127 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCS
T ss_pred             CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccC
Confidence            367999999999975443 3  246899999998            11         35677777      322  3567


Q ss_pred             CceeeEeecccccc----cCHHHHHHHHHHhccCC
Q psy10644        166 YSVDVAVFCLSLMG----TDLAACIKEANRILKLG  196 (196)
Q Consensus       166 ~sfD~Vi~~~~lh~----~d~~~~l~e~~rvLkpg  196 (196)
                      ++||+|+|..++|+    .+...+|++++|+||||
T Consensus       128 ~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpG  162 (302)
T 2vdw_A          128 GKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASG  162 (302)
T ss_dssp             SCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEE
T ss_pred             CCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCC
Confidence            89999999999975    26789999999999997

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.38  E-value=2.4e-13  Score=117.34  Aligned_cols=90  Identities=16%  Similarity=0.191  Sum_probs=73.0

Q ss_pred             HHHHHHhhcCCCCCEEEEEcCCCchhHhhc---cCC-eEEEEeCCC------------------------CCceEEEecC
Q psy10644        107 IIKSIQERESKGRLVIADLGCGEAKLAAEL---TQH-KVHSLDLVA------------------------LNERVTSCDM  158 (196)
Q Consensus       107 ~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l---~~~-~v~giDls~------------------------~~~~~~~~d~  158 (196)
                      +...+......++.+|||||||+|.++..+   .++ +|+|+|+++                        .++.++++|+
T Consensus       162 i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~  241 (438)
T 3uwp_A          162 VAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDF  241 (438)
T ss_dssp             HHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCT
T ss_pred             HHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcc
Confidence            334444445567899999999999998777   345 599999995                        3578999999


Q ss_pred             CCCCCCC--CceeeEeecccccccCHHHHHHHHHHhccCC
Q psy10644        159 TRTPLKP--YSVDVAVFCLSLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       159 ~~lp~~~--~sfD~Vi~~~~lh~~d~~~~l~e~~rvLkpg  196 (196)
                      .++|+++  ..||+|++...++..+....|.+++|+||||
T Consensus       242 ~~lp~~d~~~~aDVVf~Nn~~F~pdl~~aL~Ei~RvLKPG  281 (438)
T 3uwp_A          242 LSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEG  281 (438)
T ss_dssp             TSHHHHHHHHTCSEEEECCTTCCHHHHHHHHHHHTTSCTT
T ss_pred             cCCccccccCCccEEEEcccccCchHHHHHHHHHHcCCCC
Confidence            9888754  4799999887777779999999999999998

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.37  E-value=7e-13  Score=104.21  Aligned_cols=80  Identities=18%  Similarity=0.127  Sum_probs=64.7

Q ss_pred             CCCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCCC-------------------CceEEEecCCCCCCCCCceeeEe
Q psy10644        116 SKGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVAL-------------------NERVTSCDMTRTPLKPYSVDVAV  172 (196)
Q Consensus       116 ~~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~~-------------------~~~~~~~d~~~lp~~~~sfD~Vi  172 (196)
                      ..++.+|||||||+|.++..+    ++.+|+|+|+|+.                   ++.++++|+.++|+++++ |.|+
T Consensus        25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~-d~v~  103 (218)
T 3mq2_A           25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGV-GELH  103 (218)
T ss_dssp             TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCE-EEEE
T ss_pred             ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCC-CEEE
Confidence            345789999999999998888    3679999999982                   678999999999988777 7766


Q ss_pred             eccc---c---cccCHHHHHHHHHHhccCC
Q psy10644        173 FCLS---L---MGTDLAACIKEANRILKLG  196 (196)
Q Consensus       173 ~~~~---l---h~~d~~~~l~e~~rvLkpg  196 (196)
                      ....   +   |..++..++++++|+||||
T Consensus       104 ~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg  133 (218)
T 3mq2_A          104 VLMPWGSLLRGVLGSSPEMLRGMAAVCRPG  133 (218)
T ss_dssp             EESCCHHHHHHHHTSSSHHHHHHHHTEEEE
T ss_pred             EEccchhhhhhhhccHHHHHHHHHHHcCCC
Confidence            4332   2   2237799999999999996

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.36  E-value=2.5e-12  Score=106.70  Aligned_cols=91  Identities=14%  Similarity=0.298  Sum_probs=69.8

Q ss_pred             HHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc---cCCeEEEEeCCCC----------------------CceEEEecCC
Q psy10644        105 DIIIKSIQERESKGRLVIADLGCGEAKLAAEL---TQHKVHSLDLVAL----------------------NERVTSCDMT  159 (196)
Q Consensus       105 ~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l---~~~~v~giDls~~----------------------~~~~~~~d~~  159 (196)
                      ..+++.+.... .++.+|||||||+|.++..+   ...+|+|+|+|+.                      ++.++++|++
T Consensus        22 ~~~~~~l~~~~-~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~  100 (313)
T 3bgv_A           22 GEFLEKVRQKK-KRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSS  100 (313)
T ss_dssp             HHHHHHHHHTC---CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTT
T ss_pred             HHHHHHhhhcc-CCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEeccc
Confidence            33444443321 23679999999999998877   3569999999981                      5788999998


Q ss_pred             CCC----CC--CCceeeEeeccccccc-----CHHHHHHHHHHhccCC
Q psy10644        160 RTP----LK--PYSVDVAVFCLSLMGT-----DLAACIKEANRILKLG  196 (196)
Q Consensus       160 ~lp----~~--~~sfD~Vi~~~~lh~~-----d~~~~l~e~~rvLkpg  196 (196)
                      .++    ++  +++||+|++..++|+.     ++..+|++++|+||||
T Consensus       101 ~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~Lkpg  148 (313)
T 3bgv_A          101 KELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPG  148 (313)
T ss_dssp             TSCSTTTCSSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEE
T ss_pred             ccchhhhcccCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCC
Confidence            875    53  4599999999999753     3578999999999996

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.36  E-value=1.1e-12  Score=101.18  Aligned_cols=91  Identities=14%  Similarity=0.107  Sum_probs=71.1

Q ss_pred             HHHHHHHhhcCCCCCEEEEEcCCCchhHhhc--cC-CeEEEEeCCC---------------CCceEEEecCCCCC--CCC
Q psy10644        106 IIIKSIQERESKGRLVIADLGCGEAKLAAEL--TQ-HKVHSLDLVA---------------LNERVTSCDMTRTP--LKP  165 (196)
Q Consensus       106 ~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l--~~-~~v~giDls~---------------~~~~~~~~d~~~lp--~~~  165 (196)
                      .+++.+......++.+|||+|||+|.++..+  .+ .+|+|+|+++               .++.++++|+.+++  +++
T Consensus        32 ~l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~  111 (189)
T 3p9n_A           32 SLFNIVTARRDLTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTT  111 (189)
T ss_dssp             HHHHHHHHHSCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCS
T ss_pred             HHHHHHHhccCCCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccC
Confidence            3444454432234789999999999998865  33 4899999998               26889999987653  457


Q ss_pred             CceeeEeecccccc--cCHHHHHHHHHH--hccCC
Q psy10644        166 YSVDVAVFCLSLMG--TDLAACIKEANR--ILKLG  196 (196)
Q Consensus       166 ~sfD~Vi~~~~lh~--~d~~~~l~e~~r--vLkpg  196 (196)
                      ++||+|++...+|.  .+...++.++.+  +||||
T Consensus       112 ~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~pg  146 (189)
T 3p9n_A          112 SPVDLVLADPPYNVDSADVDAILAALGTNGWTREG  146 (189)
T ss_dssp             SCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCCTT
T ss_pred             CCccEEEECCCCCcchhhHHHHHHHHHhcCccCCC
Confidence            89999999988865  488999999999  99997

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.35  E-value=2.3e-12  Score=103.20  Aligned_cols=76  Identities=14%  Similarity=0.081  Sum_probs=64.2

Q ss_pred             CCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC---------------CCceEEEecCCCCCCC---CCceeeEeecc
Q psy10644        118 GRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA---------------LNERVTSCDMTRTPLK---PYSVDVAVFCL  175 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~---------------~~~~~~~~d~~~lp~~---~~sfD~Vi~~~  175 (196)
                      ++.+|||||||+|.++..+    .+.+|+|+|+++               .++.++.+|+++++++   +++||+|++..
T Consensus        70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~  149 (240)
T 1xdz_A           70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARA  149 (240)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEEC
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEec
Confidence            4679999999999887776    356999999998               3688999998877754   67999999876


Q ss_pred             cccccCHHHHHHHHHHhccCC
Q psy10644        176 SLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       176 ~lh~~d~~~~l~e~~rvLkpg  196 (196)
                      +   .++..+++++.++||||
T Consensus       150 ~---~~~~~~l~~~~~~Lkpg  167 (240)
T 1xdz_A          150 V---ARLSVLSELCLPLVKKN  167 (240)
T ss_dssp             C---SCHHHHHHHHGGGEEEE
T ss_pred             c---CCHHHHHHHHHHhcCCC
Confidence            2   57899999999999986

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.35  E-value=1.5e-13  Score=118.50  Aligned_cols=82  Identities=10%  Similarity=0.139  Sum_probs=65.5

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC--------CCceEEE-----ecCCCCCCCCCceeeEeecccccc
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA--------LNERVTS-----CDMTRTPLKPYSVDVAVFCLSLMG  179 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~--------~~~~~~~-----~d~~~lp~~~~sfD~Vi~~~~lh~  179 (196)
                      ...++.+|||||||+|.++..+  .+.+|+|+|+|+        .++....     .+.+.+++++++||+|++..++|+
T Consensus       104 ~~~~~~~VLDiGcG~G~~~~~l~~~g~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~fD~I~~~~vl~h  183 (416)
T 4e2x_A          104 LTGPDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSGVAAKAREKGIRVRTDFFEKATADDVRRTEGPANVIYAANTLCH  183 (416)
T ss_dssp             TCSSSCEEEEETCTTTTTHHHHHHTTCEEEEECCCHHHHHHHHTTTCCEECSCCSHHHHHHHHHHHCCEEEEEEESCGGG
T ss_pred             CCCCCCEEEEecCCCCHHHHHHHHcCCcEEEECCCHHHHHHHHHcCCCcceeeechhhHhhcccCCCCEEEEEECChHHh
Confidence            3345789999999999999988  567999999998        2233222     333455677899999999999955


Q ss_pred             c-CHHHHHHHHHHhccCC
Q psy10644        180 T-DLAACIKEANRILKLG  196 (196)
Q Consensus       180 ~-d~~~~l~e~~rvLkpg  196 (196)
                      . ++..+|++++|+||||
T Consensus       184 ~~d~~~~l~~~~r~Lkpg  201 (416)
T 4e2x_A          184 IPYVQSVLEGVDALLAPD  201 (416)
T ss_dssp             CTTHHHHHHHHHHHEEEE
T ss_pred             cCCHHHHHHHHHHHcCCC
Confidence            4 9999999999999996

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.35  E-value=5.8e-12  Score=98.03  Aligned_cols=80  Identities=20%  Similarity=0.135  Sum_probs=66.7

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC---------------CCceEEEecCCCCCCCCCceeeEeecc
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDVAVFCL  175 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~  175 (196)
                      ...++.+|||||||+|.++..+    +..+|+++|+++               .++.++.+|+.+.....+.||+|++..
T Consensus        37 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~  116 (204)
T 3e05_A           37 RLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPDPDRVFIGG  116 (204)
T ss_dssp             TCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCCCSEEEESC
T ss_pred             CCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCCCCEEEECC
Confidence            4455789999999999998887    347999999998               368889999865443447899999988


Q ss_pred             cccccCHHHHHHHHHHhccCC
Q psy10644        176 SLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       176 ~lh~~d~~~~l~e~~rvLkpg  196 (196)
                      +++  +...+++++.++||||
T Consensus       117 ~~~--~~~~~l~~~~~~Lkpg  135 (204)
T 3e05_A          117 SGG--MLEEIIDAVDRRLKSE  135 (204)
T ss_dssp             CTT--CHHHHHHHHHHHCCTT
T ss_pred             CCc--CHHHHHHHHHHhcCCC
Confidence            776  8899999999999997

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.34  E-value=3.3e-12  Score=117.94  Aligned_cols=79  Identities=11%  Similarity=0.175  Sum_probs=68.5

Q ss_pred             CCCEEEEEcCCCchhHhhc--cC---CeEEEEeCCC---------------------CCceEEEecCCCCCCCCCceeeE
Q psy10644        118 GRLVIADLGCGEAKLAAEL--TQ---HKVHSLDLVA---------------------LNERVTSCDMTRTPLKPYSVDVA  171 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l--~~---~~v~giDls~---------------------~~~~~~~~d~~~lp~~~~sfD~V  171 (196)
                      ++.+|||||||+|.++..|  .+   .+|+|+|+++                     .++.++++|+..+++++++||+|
T Consensus       721 ~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDlV  800 (950)
T 3htx_A          721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDIG  800 (950)
T ss_dssp             CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeEE
Confidence            4789999999999999988  23   6999999998                     14789999999999999999999


Q ss_pred             eeccccccc-CH--HHHHHHHHHhccCC
Q psy10644        172 VFCLSLMGT-DL--AACIKEANRILKLG  196 (196)
Q Consensus       172 i~~~~lh~~-d~--~~~l~e~~rvLkpg  196 (196)
                      ++..++|+. +.  ..++++++|+||||
T Consensus       801 V~~eVLeHL~dp~l~~~L~eI~RvLKPG  828 (950)
T 3htx_A          801 TCLEVIEHMEEDQACEFGEKVLSLFHPK  828 (950)
T ss_dssp             EEESCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred             EEeCchhhCChHHHHHHHHHHHHHcCCC
Confidence            999999655 43  35999999999997

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.34  E-value=1.9e-12  Score=102.26  Aligned_cols=79  Identities=15%  Similarity=0.109  Sum_probs=61.1

Q ss_pred             CCCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC-------------CCceEEEecCCCC----CCCCCceeeEeec
Q psy10644        116 SKGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA-------------LNERVTSCDMTRT----PLKPYSVDVAVFC  174 (196)
Q Consensus       116 ~~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~-------------~~~~~~~~d~~~l----p~~~~sfD~Vi~~  174 (196)
                      ..++.+|||||||+|.++..+    ...+|+|+|+|+             .++.++.+|+...    +++ ++||+|++.
T Consensus        55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~-~~fD~V~~~  133 (210)
T 1nt2_A           55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIV-EKVDLIYQD  133 (210)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTC-CCEEEEEEC
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccc-cceeEEEEe
Confidence            345789999999999998776    236999999997             3677888888663    454 799999987


Q ss_pred             ccccccCHHHHHHHHHHhccCC
Q psy10644        175 LSLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       175 ~~lh~~d~~~~l~e~~rvLkpg  196 (196)
                      . .+..+...++++++|+||||
T Consensus       134 ~-~~~~~~~~~l~~~~r~Lkpg  154 (210)
T 1nt2_A          134 I-AQKNQIEILKANAEFFLKEK  154 (210)
T ss_dssp             C-CSTTHHHHHHHHHHHHEEEE
T ss_pred             c-cChhHHHHHHHHHHHHhCCC
Confidence            3 23334455699999999997

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.33  E-value=3.7e-12  Score=107.87  Aligned_cols=79  Identities=15%  Similarity=0.137  Sum_probs=67.2

Q ss_pred             CCCEEEEEcCCCchhHhhc--cC-CeEEEEeCCC---------------CCceEEEecCCCCCCCCCceeeEeecccc--
Q psy10644        118 GRLVIADLGCGEAKLAAEL--TQ-HKVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDVAVFCLSL--  177 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l--~~-~~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l--  177 (196)
                      ++.+|||||||+|.++..+  .+ .+|+|+|+|+               .++.++.+|++++++++++||+|++..+.  
T Consensus        66 ~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~~~  145 (349)
T 3q7e_A           66 KDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYC  145 (349)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHTTCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBBT
T ss_pred             CCCEEEEEeccchHHHHHHHHCCCCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEcccccc
Confidence            3679999999999998888  33 3999999997               23899999999999998999999997643  


Q ss_pred             -cc-cCHHHHHHHHHHhccCC
Q psy10644        178 -MG-TDLAACIKEANRILKLG  196 (196)
Q Consensus       178 -h~-~d~~~~l~e~~rvLkpg  196 (196)
                       +. .+...++.++.|+||||
T Consensus       146 l~~~~~~~~~l~~~~r~Lkpg  166 (349)
T 3q7e_A          146 LFYESMLNTVLHARDKWLAPD  166 (349)
T ss_dssp             BTBTCCHHHHHHHHHHHEEEE
T ss_pred             ccCchhHHHHHHHHHHhCCCC
Confidence             23 38899999999999996

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.33  E-value=7e-12  Score=105.79  Aligned_cols=79  Identities=18%  Similarity=0.156  Sum_probs=64.6

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC-------------CCceEEEecCCCCCCCCCceeeEeecccc
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA-------------LNERVTSCDMTRTPLKPYSVDVAVFCLSL  177 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~-------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l  177 (196)
                      ...+..+|||||||+|.++..+    ++.+++++|+++             .++.++.+|+. .+++  +||+|++..+|
T Consensus       181 ~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~~~~~~~~~~~~v~~~~~d~~-~~~p--~~D~v~~~~vl  257 (348)
T 3lst_A          181 DFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVEGDFL-REVP--HADVHVLKRIL  257 (348)
T ss_dssp             CCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHTTCCCCCGGGTTSEEEEECCTT-TCCC--CCSEEEEESCG
T ss_pred             CccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhhcccccccCCCCCeEEEecCCC-CCCC--CCcEEEEehhc
Confidence            3345789999999999998877    455899999853             35889999986 3454  89999999999


Q ss_pred             ccc-CH--HHHHHHHHHhccCC
Q psy10644        178 MGT-DL--AACIKEANRILKLG  196 (196)
Q Consensus       178 h~~-d~--~~~l~e~~rvLkpg  196 (196)
                      |+. +.  ..+|++++|+||||
T Consensus       258 h~~~d~~~~~~L~~~~~~Lkpg  279 (348)
T 3lst_A          258 HNWGDEDSVRILTNCRRVMPAH  279 (348)
T ss_dssp             GGSCHHHHHHHHHHHHHTCCTT
T ss_pred             cCCCHHHHHHHHHHHHHhcCCC
Confidence            755 54  69999999999997

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.33  E-value=4.5e-12  Score=105.15  Aligned_cols=78  Identities=14%  Similarity=0.102  Sum_probs=64.3

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC---------------CCceEEEecCCCCCCCCCceeeEeecc
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDVAVFCL  175 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~  175 (196)
                      ...++.+|||||||+|.++..+    .+++|+|+|+++               .++.++++|+.++|  +++||+|++..
T Consensus       119 ~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~--d~~FDvV~~~a  196 (298)
T 3fpf_A          119 RFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID--GLEFDVLMVAA  196 (298)
T ss_dssp             TCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG--GCCCSEEEECT
T ss_pred             CCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC--CCCcCEEEECC
Confidence            3456899999999998664332    578999999998               36889999998765  78999999754


Q ss_pred             cccccCHHHHHHHHHHhccCC
Q psy10644        176 SLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       176 ~lh~~d~~~~l~e~~rvLkpg  196 (196)
                      .  ..++.+++++++|+||||
T Consensus       197 ~--~~d~~~~l~el~r~LkPG  215 (298)
T 3fpf_A          197 L--AEPKRRVFRNIHRYVDTE  215 (298)
T ss_dssp             T--CSCHHHHHHHHHHHCCTT
T ss_pred             C--ccCHHHHHHHHHHHcCCC
Confidence            4  358999999999999997

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=99.32  E-value=4.5e-12  Score=103.72  Aligned_cols=86  Identities=14%  Similarity=0.089  Sum_probs=64.4

Q ss_pred             HHHHHhhcCCCCCEEEEEcCCCchhHhhccC-CeEEEEeCCCC----------------CceEE--EecCCCCCCCCCce
Q psy10644        108 IKSIQERESKGRLVIADLGCGEAKLAAELTQ-HKVHSLDLVAL----------------NERVT--SCDMTRTPLKPYSV  168 (196)
Q Consensus       108 ~~~l~~~~~~~~~~ILDlGCG~G~~a~~l~~-~~v~giDls~~----------------~~~~~--~~d~~~lp~~~~sf  168 (196)
                      .+.+......++.+|||||||+|.++..+.. .+|+|+|+++.                ++.++  ++|+..++  +++|
T Consensus        64 ~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~f  141 (265)
T 2oxt_A           64 AWMEERGYVELTGRVVDLGCGRGGWSYYAASRPHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHTLP--VERT  141 (265)
T ss_dssp             HHHHHHTSCCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC--CCCC
T ss_pred             HHHHHcCCCCCCCEEEEeCcCCCHHHHHHHHcCcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhHCC--CCCC
Confidence            3333333344578999999999999988833 68999999873                46777  78888765  6799


Q ss_pred             eeEeeccccccc-----CHH---HHHHHHHHhccCC
Q psy10644        169 DVAVFCLSLMGT-----DLA---ACIKEANRILKLG  196 (196)
Q Consensus       169 D~Vi~~~~lh~~-----d~~---~~l~e~~rvLkpg  196 (196)
                      |+|+|..+ +..     +..   .+|.++.|+||||
T Consensus       142 D~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpG  176 (265)
T 2oxt_A          142 DVIMCDVG-ESSPKWSVESERTIKILELLEKWKVKN  176 (265)
T ss_dssp             SEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccC
Confidence            99999766 322     222   3899999999997

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.32  E-value=5.8e-12  Score=101.97  Aligned_cols=85  Identities=21%  Similarity=0.348  Sum_probs=68.4

Q ss_pred             HHHHHHHhhcCCCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC----------CCceEEEecCCCCCCCCCceeeE
Q psy10644        106 IIIKSIQERESKGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA----------LNERVTSCDMTRTPLKPYSVDVA  171 (196)
Q Consensus       106 ~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~----------~~~~~~~~d~~~lp~~~~sfD~V  171 (196)
                      .+.+.+....+.++.+|||||||+|.++..+    .+.+|+|+|+++          .++.+..+|+..+|+++++||+|
T Consensus        73 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v  152 (269)
T 1p91_A           73 AIVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAI  152 (269)
T ss_dssp             HHHHHHHHHSCTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEE
T ss_pred             HHHHHHHHhcCCCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEE
Confidence            3444554433245789999999999998877    267999999998          46789999999999999999999


Q ss_pred             eecccccccCHHHHHHHHHHhccCC
Q psy10644        172 VFCLSLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       172 i~~~~lh~~d~~~~l~e~~rvLkpg  196 (196)
                      ++..+.      .++++++|+||||
T Consensus       153 ~~~~~~------~~l~~~~~~L~pg  171 (269)
T 1p91_A          153 IRIYAP------CKAEELARVVKPG  171 (269)
T ss_dssp             EEESCC------CCHHHHHHHEEEE
T ss_pred             EEeCCh------hhHHHHHHhcCCC
Confidence            987663      3589999999986

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.32  E-value=7.3e-12  Score=95.53  Aligned_cols=79  Identities=23%  Similarity=0.245  Sum_probs=66.7

Q ss_pred             CCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC---------------CC--ceEEEecCCCCCCCCCceeeEeecccc
Q psy10644        117 KGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA---------------LN--ERVTSCDMTRTPLKPYSVDVAVFCLSL  177 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~---------------~~--~~~~~~d~~~lp~~~~sfD~Vi~~~~l  177 (196)
                      .++.+|||+|||+|.++..+  .+.+|+|+|+++               .+  +.++.+|+.. ++++++||+|++...+
T Consensus        51 ~~~~~vLdiG~G~G~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~~~~  129 (194)
T 1dus_A           51 DKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NVKDRKYNKIITNPPI  129 (194)
T ss_dssp             CTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TCTTSCEEEEEECCCS
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhc-ccccCCceEEEECCCc
Confidence            35789999999999998887  467999999998               23  8899999876 4557899999999988


Q ss_pred             cc-c-CHHHHHHHHHHhccCC
Q psy10644        178 MG-T-DLAACIKEANRILKLG  196 (196)
Q Consensus       178 h~-~-d~~~~l~e~~rvLkpg  196 (196)
                      |+ . +...+++++.++||||
T Consensus       130 ~~~~~~~~~~l~~~~~~L~~g  150 (194)
T 1dus_A          130 RAGKEVLHRIIEEGKELLKDN  150 (194)
T ss_dssp             TTCHHHHHHHHHHHHHHEEEE
T ss_pred             ccchhHHHHHHHHHHHHcCCC
Confidence            65 3 7889999999999986

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.32  E-value=7.7e-12  Score=97.33  Aligned_cols=91  Identities=19%  Similarity=0.183  Sum_probs=66.8

Q ss_pred             HHHHHHHhhc-CCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC----CCceEEEecCCCCCCC-----------CCc
Q psy10644        106 IIIKSIQERE-SKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA----LNERVTSCDMTRTPLK-----------PYS  167 (196)
Q Consensus       106 ~~~~~l~~~~-~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~----~~~~~~~~d~~~lp~~-----------~~s  167 (196)
                      .+++.+.... ..++.+|||||||+|.++..+  .+.+|+|+|+++    .++.++++|+.+.+..           .++
T Consensus        12 KL~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~   91 (191)
T 3dou_A           12 KLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSLARKIISIDLQEMEEIAGVRFIRCDIFKETIFDDIDRALREEGIEK   91 (191)
T ss_dssp             HHHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTTCSEEEEEESSCCCCCTTCEEEECCTTSSSHHHHHHHHHHHHTCSS
T ss_pred             HHHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHcCCcEEEEeccccccCCCeEEEEccccCHHHHHHHHHHhhcccCCc
Confidence            3444443322 245789999999999999988  356999999998    4789999999876521           148


Q ss_pred             eeeEeeccccc-----ccC-------HHHHHHHHHHhccCC
Q psy10644        168 VDVAVFCLSLM-----GTD-------LAACIKEANRILKLG  196 (196)
Q Consensus       168 fD~Vi~~~~lh-----~~d-------~~~~l~e~~rvLkpg  196 (196)
                      ||+|++.....     ..|       ...++.++.++||||
T Consensus        92 ~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpG  132 (191)
T 3dou_A           92 VDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNG  132 (191)
T ss_dssp             EEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEE
T ss_pred             ceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCC
Confidence            99999865431     112       357899999999997

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.32  E-value=6.3e-12  Score=106.12  Aligned_cols=80  Identities=23%  Similarity=0.221  Sum_probs=67.3

Q ss_pred             CCCCEEEEEcCCCchhHhhc--cC-CeEEEEeCCC---------------CCceEEEecCCCCCCCCCceeeEeecc---
Q psy10644        117 KGRLVIADLGCGEAKLAAEL--TQ-HKVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDVAVFCL---  175 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l--~~-~~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~---  175 (196)
                      .++.+|||||||+|.++..+  .+ .+|+|+|+++               .++.++.+|++++++++++||+|++..   
T Consensus        63 ~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~  142 (340)
T 2fyt_A           63 FKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGY  142 (340)
T ss_dssp             TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCBT
T ss_pred             cCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEEEEEEcCchh
Confidence            34779999999999998888  33 4899999997               368899999999999889999999876   


Q ss_pred             ccccc-CHHHHHHHHHHhccCC
Q psy10644        176 SLMGT-DLAACIKEANRILKLG  196 (196)
Q Consensus       176 ~lh~~-d~~~~l~e~~rvLkpg  196 (196)
                      .++.. +...++.++.|+||||
T Consensus       143 ~l~~~~~~~~~l~~~~~~Lkpg  164 (340)
T 2fyt_A          143 FLLFESMLDSVLYAKNKYLAKG  164 (340)
T ss_dssp             TBTTTCHHHHHHHHHHHHEEEE
T ss_pred             hccCHHHHHHHHHHHHhhcCCC
Confidence            34333 6788999999999986

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.31  E-value=6.8e-12  Score=96.61  Aligned_cols=80  Identities=19%  Similarity=0.178  Sum_probs=61.8

Q ss_pred             CCCCEEEEEcCCCchhHhhc---cC----------CeEEEEeCCC----CCceEE-EecCCCCC--------CCCCceee
Q psy10644        117 KGRLVIADLGCGEAKLAAEL---TQ----------HKVHSLDLVA----LNERVT-SCDMTRTP--------LKPYSVDV  170 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l---~~----------~~v~giDls~----~~~~~~-~~d~~~lp--------~~~~sfD~  170 (196)
                      .++.+|||||||+|.++..+   .+          .+|+|+|+++    .++.++ .+|+...+        +++++||+
T Consensus        21 ~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~fD~  100 (196)
T 2nyu_A           21 RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPLEGATFLCPADVTDPRTSQRILEVLPGRRADV  100 (196)
T ss_dssp             CTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCCCTTCEEECSCCTTSHHHHHHHHHHSGGGCEEE
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcccCCCCeEEEeccCCCHHHHHHHHHhcCCCCCcE
Confidence            34789999999999998877   12          7899999998    357788 88876543        34568999


Q ss_pred             Eeecccccc-----cCH-------HHHHHHHHHhccCC
Q psy10644        171 AVFCLSLMG-----TDL-------AACIKEANRILKLG  196 (196)
Q Consensus       171 Vi~~~~lh~-----~d~-------~~~l~e~~rvLkpg  196 (196)
                      |++..++|.     .+.       ..+++++.++||||
T Consensus       101 V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg  138 (196)
T 2nyu_A          101 ILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPG  138 (196)
T ss_dssp             EEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEE
T ss_pred             EEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCC
Confidence            998665432     233       48899999999986

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=99.31  E-value=3.6e-12  Score=104.91  Aligned_cols=78  Identities=18%  Similarity=0.315  Sum_probs=61.6

Q ss_pred             CCCCCEEEEEcCCCchhHhhccC-CeEEEEeCCCC----------------CceEE--EecCCCCCCCCCceeeEeeccc
Q psy10644        116 SKGRLVIADLGCGEAKLAAELTQ-HKVHSLDLVAL----------------NERVT--SCDMTRTPLKPYSVDVAVFCLS  176 (196)
Q Consensus       116 ~~~~~~ILDlGCG~G~~a~~l~~-~~v~giDls~~----------------~~~~~--~~d~~~lp~~~~sfD~Vi~~~~  176 (196)
                      ..++.+|||||||+|.++..+.. .+|+|+|+++.                ++.++  ++|+..+|  +++||+|++..+
T Consensus        80 ~~~g~~VLDlGcGtG~~s~~la~~~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~Vvsd~~  157 (276)
T 2wa2_A           80 VELKGTVVDLGCGRGSWSYYAASQPNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTKME--PFQADTVLCDIG  157 (276)
T ss_dssp             CCCCEEEEEESCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC--CCCCSEEEECCC
T ss_pred             CCCCCEEEEeccCCCHHHHHHHHcCCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhhCC--CCCcCEEEECCC
Confidence            34578999999999999988832 68999999873                46777  88888765  679999999876


Q ss_pred             cccc-----CHH---HHHHHHHHhccCC
Q psy10644        177 LMGT-----DLA---ACIKEANRILKLG  196 (196)
Q Consensus       177 lh~~-----d~~---~~l~e~~rvLkpg  196 (196)
                       +..     +..   .+|.++.|+||||
T Consensus       158 -~~~~~~~~d~~~~l~~L~~~~r~LkpG  184 (276)
T 2wa2_A          158 -ESNPTAAVEASRTLTVLNVISRWLEYN  184 (276)
T ss_dssp             -CCCSCHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             -cCCCchhhhHHHHHHHHHHHHHHhccC
Confidence             321     222   4799999999997

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.31  E-value=5.1e-12  Score=99.24  Aligned_cols=79  Identities=13%  Similarity=0.152  Sum_probs=66.0

Q ss_pred             CCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC---------------CCceEEEecCCCCC--CCCCceeeEeeccc
Q psy10644        118 GRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA---------------LNERVTSCDMTRTP--LKPYSVDVAVFCLS  176 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~---------------~~~~~~~~d~~~lp--~~~~sfD~Vi~~~~  176 (196)
                      ++.+|||||||+|.++..+    ++.+|+|+|+++               .++.++.+|+..++  +++++||+|++...
T Consensus        41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~  120 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS  120 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred             CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC
Confidence            4679999999999998777    357999999997               37889999998877  77889999999876


Q ss_pred             cccc---------CHHHHHHHHHHhccCC
Q psy10644        177 LMGT---------DLAACIKEANRILKLG  196 (196)
Q Consensus       177 lh~~---------d~~~~l~e~~rvLkpg  196 (196)
                      ..+.         ....++.++.++||||
T Consensus       121 ~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg  149 (214)
T 1yzh_A          121 DPWPKKRHEKRRLTYKTFLDTFKRILPEN  149 (214)
T ss_dssp             CCCCSGGGGGGSTTSHHHHHHHHHHSCTT
T ss_pred             CCccccchhhhccCCHHHHHHHHHHcCCC
Confidence            5322         2368999999999997

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.31  E-value=2e-12  Score=102.03  Aligned_cols=79  Identities=13%  Similarity=0.220  Sum_probs=64.8

Q ss_pred             CCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC---------------CCceEEEecCCCCC--CCCCceeeEeeccc
Q psy10644        118 GRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA---------------LNERVTSCDMTRTP--LKPYSVDVAVFCLS  176 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~---------------~~~~~~~~d~~~lp--~~~~sfD~Vi~~~~  176 (196)
                      ++.+|||||||+|.++..+    ++.+|+|+|+++               .++.++.+|+..++  +++++||.|++.+.
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~  117 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS  117 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred             CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence            4679999999999998877    367999999998               36889999998776  77889999987765


Q ss_pred             cccc---------CHHHHHHHHHHhccCC
Q psy10644        177 LMGT---------DLAACIKEANRILKLG  196 (196)
Q Consensus       177 lh~~---------d~~~~l~e~~rvLkpg  196 (196)
                      ..+.         ....++++++++||||
T Consensus       118 ~p~~~~~~~~~rl~~~~~l~~~~~~Lkpg  146 (213)
T 2fca_A          118 DPWPKKRHEKRRLTYSHFLKKYEEVMGKG  146 (213)
T ss_dssp             CCCCSGGGGGGSTTSHHHHHHHHHHHTTS
T ss_pred             CCCcCccccccccCcHHHHHHHHHHcCCC
Confidence            4221         1478999999999997

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.31  E-value=7.8e-12  Score=102.55  Aligned_cols=78  Identities=15%  Similarity=0.104  Sum_probs=64.7

Q ss_pred             CCEEEEEcCCC---chhHhhc----cCCeEEEEeCCC-------------CCceEEEecCCCCC-----------CCCCc
Q psy10644        119 RLVIADLGCGE---AKLAAEL----TQHKVHSLDLVA-------------LNERVTSCDMTRTP-----------LKPYS  167 (196)
Q Consensus       119 ~~~ILDlGCG~---G~~a~~l----~~~~v~giDls~-------------~~~~~~~~d~~~lp-----------~~~~s  167 (196)
                      ..+|||||||+   |.++..+    ++.+|+++|+|+             .++.++.+|+...+           ++.++
T Consensus        78 ~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~~  157 (274)
T 2qe6_A           78 ISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDFSR  157 (274)
T ss_dssp             CCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCTTS
T ss_pred             CCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCCCC
Confidence            47999999999   9876655    467999999998             36889999986521           33358


Q ss_pred             eeeEeeccccccc-C--HHHHHHHHHHhccCC
Q psy10644        168 VDVAVFCLSLMGT-D--LAACIKEANRILKLG  196 (196)
Q Consensus       168 fD~Vi~~~~lh~~-d--~~~~l~e~~rvLkpg  196 (196)
                      ||+|++..+||+. +  +..+|++++++||||
T Consensus       158 ~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pG  189 (274)
T 2qe6_A          158 PAAIMLVGMLHYLSPDVVDRVVGAYRDALAPG  189 (274)
T ss_dssp             CCEEEETTTGGGSCTTTHHHHHHHHHHHSCTT
T ss_pred             CEEEEEechhhhCCcHHHHHHHHHHHHhCCCC
Confidence            9999999999765 4  899999999999997

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.31  E-value=1.4e-11  Score=95.81  Aligned_cols=89  Identities=16%  Similarity=0.087  Sum_probs=67.6

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC---------------CCceEEEecCCCCCCC
Q psy10644        104 VDIIIKSIQERESKGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA---------------LNERVTSCDMTRTPLK  164 (196)
Q Consensus       104 ~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~---------------~~~~~~~~d~~~lp~~  164 (196)
                      ...+++.+......++.+|||+|||+|.++..+    ++.+|+++|+++               .++.+..+|+..++ +
T Consensus        51 ~~~~~~~l~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~  129 (207)
T 1jsx_A           51 VRHILDSIVVAPYLQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP-S  129 (207)
T ss_dssp             HHHHHHHHHHGGGCCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC-C
T ss_pred             HHHHHhhhhhhhhcCCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCC-c
Confidence            344455554322113679999999999998777    367999999998               24788999998765 4


Q ss_pred             CCceeeEeecccccccCHHHHHHHHHHhccCC
Q psy10644        165 PYSVDVAVFCLSLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       165 ~~sfD~Vi~~~~lh~~d~~~~l~e~~rvLkpg  196 (196)
                      .++||+|++...   .++..++.++.++||||
T Consensus       130 ~~~~D~i~~~~~---~~~~~~l~~~~~~L~~g  158 (207)
T 1jsx_A          130 EPPFDGVISRAF---ASLNDMVSWCHHLPGEQ  158 (207)
T ss_dssp             CSCEEEEECSCS---SSHHHHHHHHTTSEEEE
T ss_pred             cCCcCEEEEecc---CCHHHHHHHHHHhcCCC
Confidence            678999997532   46789999999999986

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.30  E-value=1.2e-12  Score=103.94  Aligned_cols=79  Identities=14%  Similarity=0.163  Sum_probs=63.8

Q ss_pred             CCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC---------------CCceEEEecCCCC-C--CCCCceeeEeecc
Q psy10644        118 GRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA---------------LNERVTSCDMTRT-P--LKPYSVDVAVFCL  175 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~---------------~~~~~~~~d~~~l-p--~~~~sfD~Vi~~~  175 (196)
                      ++.+|||||||+|.++..+    ++..|+|+|+++               .|+.++.+|+..+ +  +++++||.|++.+
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~  113 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF  113 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence            4679999999999998877    456899999998               3789999998763 4  7889999999886


Q ss_pred             ccccc---C------HHHHHHHHHHhccCC
Q psy10644        176 SLMGT---D------LAACIKEANRILKLG  196 (196)
Q Consensus       176 ~lh~~---d------~~~~l~e~~rvLkpg  196 (196)
                      ...+.   .      ...++++++|+||||
T Consensus       114 ~~p~~~~~~~~rr~~~~~~l~~~~r~LkpG  143 (218)
T 3dxy_A          114 PDPWHKARHNKRRIVQVPFAELVKSKLQLG  143 (218)
T ss_dssp             CCCCCSGGGGGGSSCSHHHHHHHHHHEEEE
T ss_pred             CCCccchhhhhhhhhhHHHHHHHHHHcCCC
Confidence            54222   1      136999999999997

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.30  E-value=6.7e-12  Score=95.55  Aligned_cols=89  Identities=19%  Similarity=0.225  Sum_probs=68.9

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC------CCceEEEecCCCCCCCCCceeeEeecc
Q psy10644        104 VDIIIKSIQERESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA------LNERVTSCDMTRTPLKPYSVDVAVFCL  175 (196)
Q Consensus       104 ~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~------~~~~~~~~d~~~lp~~~~sfD~Vi~~~  175 (196)
                      ...+++.+.... .++.+|||+|||+|.++..+  .+ +|+|+|+++      .++.++++|+.+ ++++++||+|+++.
T Consensus        10 ~~~l~~~l~~~~-~~~~~vLD~GcG~G~~~~~l~~~~-~v~gvD~s~~~~~~~~~~~~~~~d~~~-~~~~~~fD~i~~n~   86 (170)
T 3q87_B           10 TYTLMDALEREG-LEMKIVLDLGTSTGVITEQLRKRN-TVVSTDLNIRALESHRGGNLVRADLLC-SINQESVDVVVFNP   86 (170)
T ss_dssp             HHHHHHHHHHHT-CCSCEEEEETCTTCHHHHHHTTTS-EEEEEESCHHHHHTCSSSCEEECSTTT-TBCGGGCSEEEECC
T ss_pred             HHHHHHHHHhhc-CCCCeEEEeccCccHHHHHHHhcC-cEEEEECCHHHHhcccCCeEEECChhh-hcccCCCCEEEECC
Confidence            444555554321 23669999999999999998  34 999999998      578999999977 67778999999998


Q ss_pred             ccccc-C---------HHHHHHHHHHhccCC
Q psy10644        176 SLMGT-D---------LAACIKEANRILKLG  196 (196)
Q Consensus       176 ~lh~~-d---------~~~~l~e~~rvLkpg  196 (196)
                      .+|.. +         ...++.++.+.| ||
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pg  116 (170)
T 3q87_B           87 PYVPDTDDPIIGGGYLGREVIDRFVDAV-TV  116 (170)
T ss_dssp             CCBTTCCCTTTBCCGGGCHHHHHHHHHC-CS
T ss_pred             CCccCCccccccCCcchHHHHHHHHhhC-CC
Confidence            88643 2         367888888887 64

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.30  E-value=5.5e-12  Score=107.86  Aligned_cols=79  Identities=20%  Similarity=0.111  Sum_probs=66.0

Q ss_pred             CCCCEEEEEcCCCchhHhhc--cCC-eEEEEeCCC---------------CCceEEEecCCCCCCCCCceeeEeeccccc
Q psy10644        117 KGRLVIADLGCGEAKLAAEL--TQH-KVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDVAVFCLSLM  178 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l--~~~-~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh  178 (196)
                      .++.+|||||||+|.++..+  .+. +|+|+|+|+               .++.++.+|+++++++ ++||+|++..+.|
T Consensus        62 ~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Iv~~~~~~  140 (376)
T 3r0q_C           62 FEGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLP-EKVDVIISEWMGY  140 (376)
T ss_dssp             TTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCCCS-SCEEEEEECCCBT
T ss_pred             CCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcCcC-CcceEEEEcChhh
Confidence            34789999999999998888  344 999999996               2379999999998877 8999999966544


Q ss_pred             c----cCHHHHHHHHHHhccCC
Q psy10644        179 G----TDLAACIKEANRILKLG  196 (196)
Q Consensus       179 ~----~d~~~~l~e~~rvLkpg  196 (196)
                      .    .++..++.++.|+||||
T Consensus       141 ~l~~e~~~~~~l~~~~~~Lkpg  162 (376)
T 3r0q_C          141 FLLRESMFDSVISARDRWLKPT  162 (376)
T ss_dssp             TBTTTCTHHHHHHHHHHHEEEE
T ss_pred             cccchHHHHHHHHHHHhhCCCC
Confidence            3    26888999999999996

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.30  E-value=3e-11  Score=102.81  Aligned_cols=79  Identities=16%  Similarity=0.166  Sum_probs=65.4

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC----------------CCceEEEecCCCCCCCCCceeeEeec
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAVFC  174 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~  174 (196)
                      ...+..+|||||||+|.++..+    ++.+++++|+ +                .++.+..+|+. .+++. .||+|++.
T Consensus       199 ~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~-~~~p~-~~D~v~~~  275 (369)
T 3gwz_A          199 DFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFF-ETIPD-GADVYLIK  275 (369)
T ss_dssp             CCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-TCCCS-SCSEEEEE
T ss_pred             CCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCC-CCCCC-CceEEEhh
Confidence            3345689999999999998877    4669999999 6                35899999997 46665 89999999


Q ss_pred             cccccc-CHH--HHHHHHHHhccCC
Q psy10644        175 LSLMGT-DLA--ACIKEANRILKLG  196 (196)
Q Consensus       175 ~~lh~~-d~~--~~l~e~~rvLkpg  196 (196)
                      .+||.. +..  ++|++++++||||
T Consensus       276 ~vlh~~~d~~~~~~L~~~~~~L~pg  300 (369)
T 3gwz_A          276 HVLHDWDDDDVVRILRRIATAMKPD  300 (369)
T ss_dssp             SCGGGSCHHHHHHHHHHHHTTCCTT
T ss_pred             hhhccCCHHHHHHHHHHHHHHcCCC
Confidence            999765 433  7999999999997

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.29  E-value=2.2e-11  Score=102.74  Aligned_cols=74  Identities=20%  Similarity=0.196  Sum_probs=62.7

Q ss_pred             CCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC---------CCceEEEecCCCCCCCCCceeeEeeccccccc-CHH
Q psy10644        118 GRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA---------LNERVTSCDMTRTPLKPYSVDVAVFCLSLMGT-DLA  183 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~---------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~~-d~~  183 (196)
                      +..+|||||||+|.++..+    ++.+++++|+ +         .++.++.+|+.. +++.  ||+|++..+||+. +..
T Consensus       188 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~-~~p~--~D~v~~~~~lh~~~d~~  263 (352)
T 1fp2_A          188 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGSNNLTYVGGDMFT-SIPN--ADAVLLKYILHNWTDKD  263 (352)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCBTTEEEEECCTTT-CCCC--CSEEEEESCGGGSCHHH
T ss_pred             cCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccCCCcEEEeccccC-CCCC--ccEEEeehhhccCCHHH
Confidence            4679999999999998888    4669999999 5         368899999866 5653  9999999999754 555


Q ss_pred             --HHHHHHHHhccC
Q psy10644        184 --ACIKEANRILKL  195 (196)
Q Consensus       184 --~~l~e~~rvLkp  195 (196)
                        .+|++++++|||
T Consensus       264 ~~~~l~~~~~~L~p  277 (352)
T 1fp2_A          264 CLRILKKCKEAVTN  277 (352)
T ss_dssp             HHHHHHHHHHHHSG
T ss_pred             HHHHHHHHHHhCCC
Confidence              999999999999

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.29  E-value=4.8e-11  Score=99.69  Aligned_cols=74  Identities=12%  Similarity=0.146  Sum_probs=62.7

Q ss_pred             CEEEEEcCCCchhHhhc----cCCeEEEEeCCC----------------CCceEEEecCCCCCCCCCceeeEeecccccc
Q psy10644        120 LVIADLGCGEAKLAAEL----TQHKVHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAVFCLSLMG  179 (196)
Q Consensus       120 ~~ILDlGCG~G~~a~~l----~~~~v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~  179 (196)
                      .+|||||||+|.++..+    ++.+++++|+ +                .++.++.+|+.. +++ +.||+|++..++|.
T Consensus       169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~-~~~D~v~~~~vl~~  245 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVP-SNGDIYLLSRIIGD  245 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCC-SSCSEEEEESCGGG
T ss_pred             CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CCC-CCCCEEEEchhccC
Confidence            79999999999998877    4669999999 6                258899999876 555 67999999999974


Q ss_pred             -cCH--HHHHHHHHHhccCC
Q psy10644        180 -TDL--AACIKEANRILKLG  196 (196)
Q Consensus       180 -~d~--~~~l~e~~rvLkpg  196 (196)
                       .+.  ..++++++++||||
T Consensus       246 ~~~~~~~~~l~~~~~~L~pg  265 (334)
T 2ip2_A          246 LDEAASLRLLGNCREAMAGD  265 (334)
T ss_dssp             CCHHHHHHHHHHHHHHSCTT
T ss_pred             CCHHHHHHHHHHHHHhcCCC
Confidence             444  48999999999997

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.29  E-value=1.3e-11  Score=103.26  Aligned_cols=76  Identities=21%  Similarity=0.207  Sum_probs=64.0

Q ss_pred             CCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC----------------CCceEEEecCCCCCCCCCceeeEeecccc
Q psy10644        118 GRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAVFCLSL  177 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l  177 (196)
                      +..+|||||||+|.++..+    ++.+++++|+ +                .++.+..+|+. .+++. .||+|++..+|
T Consensus       169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~p~-~~D~v~~~~vl  245 (332)
T 3i53_A          169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFF-DPLPA-GAGGYVLSAVL  245 (332)
T ss_dssp             GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-SCCCC-SCSEEEEESCG
T ss_pred             CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCC-CCCCC-CCcEEEEehhh
Confidence            3579999999999998777    4669999999 6                35889999996 45555 89999999999


Q ss_pred             ccc-C--HHHHHHHHHHhccCC
Q psy10644        178 MGT-D--LAACIKEANRILKLG  196 (196)
Q Consensus       178 h~~-d--~~~~l~e~~rvLkpg  196 (196)
                      |+. +  ..++|++++++||||
T Consensus       246 h~~~~~~~~~~l~~~~~~L~pg  267 (332)
T 3i53_A          246 HDWDDLSAVAILRRCAEAAGSG  267 (332)
T ss_dssp             GGSCHHHHHHHHHHHHHHHTTT
T ss_pred             ccCCHHHHHHHHHHHHHhcCCC
Confidence            755 4  488999999999997

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.29  E-value=4.9e-12  Score=95.73  Aligned_cols=78  Identities=19%  Similarity=0.193  Sum_probs=61.7

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC---------------C-CceEEEecCCC-CCCCCCceeeEee
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA---------------L-NERVTSCDMTR-TPLKPYSVDVAVF  173 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~---------------~-~~~~~~~d~~~-lp~~~~sfD~Vi~  173 (196)
                      ...++.+|||+|||+|.++..+    ++.+|+++|+++               . ++ ++.+|... ++...++||+|++
T Consensus        22 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~D~i~~  100 (178)
T 3hm2_A           22 APKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVPDNPDVIFI  100 (178)
T ss_dssp             CCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCCSCCSEEEE
T ss_pred             cccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccCCCCCEEEE
Confidence            4445789999999999998877    256999999998               1 45 77777743 4433389999999


Q ss_pred             cccccccCHHHHHHHHHHhccCC
Q psy10644        174 CLSLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       174 ~~~lh~~d~~~~l~e~~rvLkpg  196 (196)
                      ..+++.   ..+++++.++||||
T Consensus       101 ~~~~~~---~~~l~~~~~~L~~g  120 (178)
T 3hm2_A          101 GGGLTA---PGVFAAAWKRLPVG  120 (178)
T ss_dssp             CC-TTC---TTHHHHHHHTCCTT
T ss_pred             CCcccH---HHHHHHHHHhcCCC
Confidence            999866   78999999999997

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.29  E-value=4.3e-12  Score=98.05  Aligned_cols=82  Identities=17%  Similarity=0.199  Sum_probs=65.2

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC----------------CCceEEEecCCCCC-CCCCceeeEe
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA----------------LNERVTSCDMTRTP-LKPYSVDVAV  172 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~----------------~~~~~~~~d~~~lp-~~~~sfD~Vi  172 (196)
                      ...++.+|||+|||+|.++..+     ...+|+|+|+++                .++.++.+|+..++ +.+++||+|+
T Consensus        19 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~   98 (197)
T 3eey_A           19 FVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVM   98 (197)
T ss_dssp             HCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEE
T ss_pred             cCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEE
Confidence            3345789999999999998777     135999999998                25788999987775 5678999999


Q ss_pred             eccccc---------cc-CHHHHHHHHHHhccCC
Q psy10644        173 FCLSLM---------GT-DLAACIKEANRILKLG  196 (196)
Q Consensus       173 ~~~~lh---------~~-d~~~~l~e~~rvLkpg  196 (196)
                      +...+.         .. +...+++++.++||||
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~g  132 (197)
T 3eey_A           99 FNLGYLPSGDHSISTRPETTIQALSKAMELLVTG  132 (197)
T ss_dssp             EEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEE
T ss_pred             EcCCcccCcccccccCcccHHHHHHHHHHhCcCC
Confidence            887551         11 4567999999999986

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.29  E-value=1.9e-11  Score=95.86  Aligned_cols=78  Identities=12%  Similarity=0.046  Sum_probs=63.3

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC---------------C-CceEEEecCCCCCCCCCceeeEeeccc
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA---------------L-NERVTSCDMTRTPLKPYSVDVAVFCLS  176 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~---------------~-~~~~~~~d~~~lp~~~~sfD~Vi~~~~  176 (196)
                      ...++.+|||||||+|.++..+  .+.+|+|+|+++               . ++.++.+|+.+.......||+|++..+
T Consensus        52 ~~~~~~~vLDlGcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~  131 (204)
T 3njr_A           52 APRRGELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLPEAVFIGGG  131 (204)
T ss_dssp             CCCTTCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCCSEEEECSC
T ss_pred             CCCCCCEEEEecCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCCCEEEECCc
Confidence            4445789999999999998777  467999999998               2 688999998773333457999997764


Q ss_pred             ccccCHHHHHHHHHHhccCC
Q psy10644        177 LMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       177 lh~~d~~~~l~e~~rvLkpg  196 (196)
                      +   +.. +++++.++||||
T Consensus       132 ~---~~~-~l~~~~~~Lkpg  147 (204)
T 3njr_A          132 G---SQA-LYDRLWEWLAPG  147 (204)
T ss_dssp             C---CHH-HHHHHHHHSCTT
T ss_pred             c---cHH-HHHHHHHhcCCC
Confidence            4   667 999999999997

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.29  E-value=1e-11  Score=106.51  Aligned_cols=92  Identities=20%  Similarity=0.195  Sum_probs=73.8

Q ss_pred             HHHHHHHHhhc---CCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC--------------CCceEEEecCCCCCCCC
Q psy10644        105 DIIIKSIQERE---SKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA--------------LNERVTSCDMTRTPLKP  165 (196)
Q Consensus       105 ~~~~~~l~~~~---~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~--------------~~~~~~~~d~~~lp~~~  165 (196)
                      ..+++.+....   ..++.+|||+|||+|.++..+  .+.+|+++|+++              ..+.++.+|+...+.++
T Consensus       217 ~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~  296 (381)
T 3dmg_A          217 LLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEE  296 (381)
T ss_dssp             HHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHTTCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTT
T ss_pred             HHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccC
Confidence            34455554321   224679999999999998888  567999999998              25789999998887777


Q ss_pred             CceeeEeecccccc-----c-CHHHHHHHHHHhccCC
Q psy10644        166 YSVDVAVFCLSLMG-----T-DLAACIKEANRILKLG  196 (196)
Q Consensus       166 ~sfD~Vi~~~~lh~-----~-d~~~~l~e~~rvLkpg  196 (196)
                      ++||+|++...+|+     . +...+++++.++||||
T Consensus       297 ~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpG  333 (381)
T 3dmg_A          297 ARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPG  333 (381)
T ss_dssp             CCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEE
T ss_pred             CCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcC
Confidence            89999999988875     2 6788999999999986

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.28  E-value=2.2e-11  Score=103.64  Aligned_cols=76  Identities=16%  Similarity=0.153  Sum_probs=64.1

Q ss_pred             CCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC---------CCceEEEecCCCCCCCCCceeeEeeccccccc-CH
Q psy10644        117 KGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA---------LNERVTSCDMTRTPLKPYSVDVAVFCLSLMGT-DL  182 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~---------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~~-d~  182 (196)
                      .+..+|||||||+|.++..+    +..+++++|+ +         .++.++.+|+.. +++.  ||+|++..+||+. +.
T Consensus       208 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~-~~~~--~D~v~~~~~lh~~~d~  283 (372)
T 1fp1_D          208 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPLSGIEHVGGDMFA-SVPQ--GDAMILKAVCHNWSDE  283 (372)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCCTTEEEEECCTTT-CCCC--EEEEEEESSGGGSCHH
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhcCCCEEEeCCccc-CCCC--CCEEEEecccccCCHH
Confidence            34689999999999998888    4568999998 4         468899999977 6664  9999999999755 55


Q ss_pred             H--HHHHHHHHhccCC
Q psy10644        183 A--ACIKEANRILKLG  196 (196)
Q Consensus       183 ~--~~l~e~~rvLkpg  196 (196)
                      .  .+|++++|+||||
T Consensus       284 ~~~~~l~~~~~~L~pg  299 (372)
T 1fp1_D          284 KCIEFLSNCHKALSPN  299 (372)
T ss_dssp             HHHHHHHHHHHHEEEE
T ss_pred             HHHHHHHHHHHhcCCC
Confidence            5  9999999999986

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.28  E-value=1.3e-11  Score=102.92  Aligned_cols=79  Identities=8%  Similarity=0.073  Sum_probs=66.5

Q ss_pred             CCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC---------------CCceEEEecCCCCCCCCCceeeEeecccc
Q psy10644        117 KGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDVAVFCLSL  177 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l  177 (196)
                      .+..+|||||||+|.++..+    ++.+|+++|++.               .++.+..+|+...+++.+ ||+|++..++
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~D~v~~~~~l  242 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEVDYGND-YDLVLLPNFL  242 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSC-EEEEEEESCG
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCC-CcEEEEcchh
Confidence            45789999999999998877    367999999984               248899999987777655 9999999999


Q ss_pred             ccc---CHHHHHHHHHHhccCC
Q psy10644        178 MGT---DLAACIKEANRILKLG  196 (196)
Q Consensus       178 h~~---d~~~~l~e~~rvLkpg  196 (196)
                      |+.   +...++++++++||||
T Consensus       243 ~~~~~~~~~~~l~~~~~~L~pg  264 (335)
T 2r3s_A          243 HHFDVATCEQLLRKIKTALAVE  264 (335)
T ss_dssp             GGSCHHHHHHHHHHHHHHEEEE
T ss_pred             ccCCHHHHHHHHHHHHHhCCCC
Confidence            754   4579999999999986

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.28  E-value=5e-12  Score=101.62  Aligned_cols=87  Identities=17%  Similarity=0.083  Sum_probs=68.7

Q ss_pred             HHHHhhcCCCCCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC-------------CCceEEEecCCC---CCCCCCc
Q psy10644        109 KSIQERESKGRLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA-------------LNERVTSCDMTR---TPLKPYS  167 (196)
Q Consensus       109 ~~l~~~~~~~~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~-------------~~~~~~~~d~~~---lp~~~~s  167 (196)
                      ..+..+..+++.+|||+|||+|.++..+     +..+|+|+|+++             .|+..+.+|...   .++..++
T Consensus        68 ~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~  147 (233)
T 4df3_A           68 KGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEG  147 (233)
T ss_dssp             TTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCC
T ss_pred             hchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccce
Confidence            3344456678999999999999998888     456999999998             478888888743   4567789


Q ss_pred             eeeEeecccccccCHHHHHHHHHHhccCC
Q psy10644        168 VDVAVFCLSLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       168 fD~Vi~~~~lh~~d~~~~l~e~~rvLkpg  196 (196)
                      +|+|++... |..+...++.+++|+||||
T Consensus       148 vDvVf~d~~-~~~~~~~~l~~~~r~LKpG  175 (233)
T 4df3_A          148 VDGLYADVA-QPEQAAIVVRNARFFLRDG  175 (233)
T ss_dssp             EEEEEECCC-CTTHHHHHHHHHHHHEEEE
T ss_pred             EEEEEEecc-CChhHHHHHHHHHHhccCC
Confidence            999875432 4447788999999999996

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.28  E-value=3.6e-13  Score=107.41  Aligned_cols=78  Identities=15%  Similarity=0.110  Sum_probs=65.7

Q ss_pred             CCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC----------------CCceEEEecCCCCCCCCCceeeEeecccccc
Q psy10644        118 GRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAVFCLSLMG  179 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~  179 (196)
                      ++.+|||+|||+|.++..+  .+.+|+|+|+++                .++.++++|+..++ ++++||+|++...+|+
T Consensus        78 ~~~~vLD~gcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~~~~~  156 (241)
T 3gdh_A           78 KCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA-SFLKADVVFLSPPWGG  156 (241)
T ss_dssp             CCSEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG-GGCCCSEEEECCCCSS
T ss_pred             CCCEEEECccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc-ccCCCCEEEECCCcCC
Confidence            3789999999999999888  567999999998                26789999998766 5689999999998865


Q ss_pred             c-CHHHHHHHHHHhccCC
Q psy10644        180 T-DLAACIKEANRILKLG  196 (196)
Q Consensus       180 ~-d~~~~l~e~~rvLkpg  196 (196)
                      . +....+.+++++||||
T Consensus       157 ~~~~~~~~~~~~~~L~pg  174 (241)
T 3gdh_A          157 PDYATAETFDIRTMMSPD  174 (241)
T ss_dssp             GGGGGSSSBCTTTSCSSC
T ss_pred             cchhhhHHHHHHhhcCCc
Confidence            5 5555778888999886

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.27  E-value=5.7e-11  Score=101.14  Aligned_cols=77  Identities=17%  Similarity=0.104  Sum_probs=64.0

Q ss_pred             CCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC--------CCceEEEecCCCCCCCCCceeeEeeccccccc---C
Q psy10644        117 KGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA--------LNERVTSCDMTRTPLKPYSVDVAVFCLSLMGT---D  181 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~--------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~~---d  181 (196)
                      .+..+|||||||+|.++..+    ++.+++++|+..        .++.++.+|+.. |++.+  |+|++..+||..   +
T Consensus       202 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~-~~p~~--D~v~~~~vlh~~~~~~  278 (368)
T 3reo_A          202 EGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAFSGVEHLGGDMFD-GVPKG--DAIFIKWICHDWSDEH  278 (368)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTT-CCCCC--SEEEEESCGGGBCHHH
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHHHHHhhhhcCCCEEEecCCCC-CCCCC--CEEEEechhhcCCHHH
Confidence            44689999999999998887    466999999832        478999999976 77654  999999999744   3


Q ss_pred             HHHHHHHHHHhccCC
Q psy10644        182 LAACIKEANRILKLG  196 (196)
Q Consensus       182 ~~~~l~e~~rvLkpg  196 (196)
                      ...+|++++++||||
T Consensus       279 ~~~~l~~~~~~L~pg  293 (368)
T 3reo_A          279 CLKLLKNCYAALPDH  293 (368)
T ss_dssp             HHHHHHHHHHHSCTT
T ss_pred             HHHHHHHHHHHcCCC
Confidence            458999999999997

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.27  E-value=2.6e-11  Score=101.78  Aligned_cols=78  Identities=15%  Similarity=0.185  Sum_probs=65.6

Q ss_pred             CCEEEEEcCCCchhHhhc--cC-CeEEEEeCCC---------------CCceEEEecCCCCCCCCCceeeEeecccc---
Q psy10644        119 RLVIADLGCGEAKLAAEL--TQ-HKVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDVAVFCLSL---  177 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l--~~-~~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l---  177 (196)
                      +.+|||||||+|.++..+  .+ .+|+|+|+++               .++.++.+|++++++++++||+|++....   
T Consensus        39 ~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~~l  118 (328)
T 1g6q_1           39 DKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFL  118 (328)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTCCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBTTB
T ss_pred             CCEEEEecCccHHHHHHHHHCCCCEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCchhhc
Confidence            679999999999998887  33 3899999996               24789999999998888899999987543   


Q ss_pred             cc-cCHHHHHHHHHHhccCC
Q psy10644        178 MG-TDLAACIKEANRILKLG  196 (196)
Q Consensus       178 h~-~d~~~~l~e~~rvLkpg  196 (196)
                      +. ..+..++.++.|+||||
T Consensus       119 ~~~~~~~~~l~~~~~~Lkpg  138 (328)
T 1g6q_1          119 LYESMMDTVLYARDHYLVEG  138 (328)
T ss_dssp             STTCCHHHHHHHHHHHEEEE
T ss_pred             ccHHHHHHHHHHHHhhcCCC
Confidence            22 37889999999999986

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.26  E-value=3.1e-11  Score=102.30  Aligned_cols=78  Identities=22%  Similarity=0.311  Sum_probs=63.7

Q ss_pred             CCCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC----------------CCceEEEecCCCCCCCCCceeeEeecc
Q psy10644        116 SKGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAVFCL  175 (196)
Q Consensus       116 ~~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~  175 (196)
                      ..++.+|||||||+|.++..+    ++.+++++|+ +                .++.++.+|+.+ +++. .||+|++..
T Consensus       180 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~-~~D~v~~~~  256 (374)
T 1qzz_A          180 WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLPV-TADVVLLSF  256 (374)
T ss_dssp             CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSC-CEEEEEEES
T ss_pred             CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-cCCC-CCCEEEEec
Confidence            345789999999999998877    3569999998 6                268999999865 4444 399999999


Q ss_pred             ccccc-CH--HHHHHHHHHhccCC
Q psy10644        176 SLMGT-DL--AACIKEANRILKLG  196 (196)
Q Consensus       176 ~lh~~-d~--~~~l~e~~rvLkpg  196 (196)
                      ++|+. +.  ..++++++++||||
T Consensus       257 vl~~~~~~~~~~~l~~~~~~L~pg  280 (374)
T 1qzz_A          257 VLLNWSDEDALTILRGCVRALEPG  280 (374)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred             cccCCCHHHHHHHHHHHHHhcCCC
Confidence            99755 44  48999999999986

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.26  E-value=7.2e-11  Score=100.39  Aligned_cols=77  Identities=19%  Similarity=0.154  Sum_probs=64.8

Q ss_pred             CCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC--------CCceEEEecCCCCCCCCCceeeEeeccccccc---C
Q psy10644        117 KGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA--------LNERVTSCDMTRTPLKPYSVDVAVFCLSLMGT---D  181 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~--------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~~---d  181 (196)
                      .+..+|||||||+|.++..+    ++.+++++|+..        .++.++.+|+.. |++.+  |+|++..+||..   +
T Consensus       200 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~-~~p~~--D~v~~~~vlh~~~d~~  276 (364)
T 3p9c_A          200 EGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQFPGVTHVGGDMFK-EVPSG--DTILMKWILHDWSDQH  276 (364)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTT-CCCCC--SEEEEESCGGGSCHHH
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHhhhhcCCeEEEeCCcCC-CCCCC--CEEEehHHhccCCHHH
Confidence            34689999999999998887    466999999933        478999999977 77755  999999999744   4


Q ss_pred             HHHHHHHHHHhccCC
Q psy10644        182 LAACIKEANRILKLG  196 (196)
Q Consensus       182 ~~~~l~e~~rvLkpg  196 (196)
                      ...+|++++++||||
T Consensus       277 ~~~~L~~~~~~L~pg  291 (364)
T 3p9c_A          277 CATLLKNCYDALPAH  291 (364)
T ss_dssp             HHHHHHHHHHHSCTT
T ss_pred             HHHHHHHHHHHcCCC
Confidence            568999999999997

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.25  E-value=3.3e-11  Score=101.88  Aligned_cols=78  Identities=21%  Similarity=0.309  Sum_probs=65.8

Q ss_pred             CCCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC----------------CCceEEEecCCCCCCCCCceeeEeecc
Q psy10644        116 SKGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAVFCL  175 (196)
Q Consensus       116 ~~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~  175 (196)
                      ..+..+|||||||+|.++..+    ++.+|+++|+ +                .++.++.+|+...++++.  |+|++..
T Consensus       188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~--D~v~~~~  264 (359)
T 1x19_A          188 LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEA--DAVLFCR  264 (359)
T ss_dssp             CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCCC--SEEEEES
T ss_pred             CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCCC--CEEEEec
Confidence            345789999999999998887    3569999999 6                148899999988777654  9999999


Q ss_pred             ccccc-C--HHHHHHHHHHhccCC
Q psy10644        176 SLMGT-D--LAACIKEANRILKLG  196 (196)
Q Consensus       176 ~lh~~-d--~~~~l~e~~rvLkpg  196 (196)
                      ++|.. +  ...+|++++++||||
T Consensus       265 vlh~~~d~~~~~~l~~~~~~L~pg  288 (359)
T 1x19_A          265 ILYSANEQLSTIMCKKAFDAMRSG  288 (359)
T ss_dssp             CGGGSCHHHHHHHHHHHHTTCCTT
T ss_pred             hhccCCHHHHHHHHHHHHHhcCCC
Confidence            99754 4  788999999999997

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.24  E-value=8.3e-12  Score=99.55  Aligned_cols=79  Identities=15%  Similarity=0.095  Sum_probs=59.2

Q ss_pred             CCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC-------------------CCceEEEecCCCCCCC-CCceeeEee
Q psy10644        118 GRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA-------------------LNERVTSCDMTRTPLK-PYSVDVAVF  173 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~-------------------~~~~~~~~d~~~lp~~-~~sfD~Vi~  173 (196)
                      ++.+|||||||+|.++..+    .+.+|+|+|+|+                   .++.+.++|++.+|.. .+.+|.|++
T Consensus        24 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~~  103 (225)
T 3p2e_A           24 FDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSISI  103 (225)
T ss_dssp             CSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEEE
T ss_pred             CCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEEE
Confidence            4679999999999998887    345899999993                   2578889999888632 255666655


Q ss_pred             cccc-----cc-cCHHHHHHHHHHhccCC
Q psy10644        174 CLSL-----MG-TDLAACIKEANRILKLG  196 (196)
Q Consensus       174 ~~~l-----h~-~d~~~~l~e~~rvLkpg  196 (196)
                      .+.+     |. .+...+|++++|+||||
T Consensus       104 ~~~~~~~~~~~~~~~~~~l~~~~r~LkpG  132 (225)
T 3p2e_A          104 LFPWGTLLEYVIKPNRDILSNVADLAKKE  132 (225)
T ss_dssp             ESCCHHHHHHHHTTCHHHHHHHHTTEEEE
T ss_pred             eCCCcHHhhhhhcchHHHHHHHHHhcCCC
Confidence            5433     11 14567999999999997

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.24  E-value=1.6e-11  Score=97.56  Aligned_cols=76  Identities=21%  Similarity=0.130  Sum_probs=61.4

Q ss_pred             CCCCCEEEEEcCCCchhHhhc--c-C-CeEEEEeCCC-------------CCceEEEecCCC----CCCCCCceeeEeec
Q psy10644        116 SKGRLVIADLGCGEAKLAAEL--T-Q-HKVHSLDLVA-------------LNERVTSCDMTR----TPLKPYSVDVAVFC  174 (196)
Q Consensus       116 ~~~~~~ILDlGCG~G~~a~~l--~-~-~~v~giDls~-------------~~~~~~~~d~~~----lp~~~~sfD~Vi~~  174 (196)
                      ..++.+|||+|||+|.++..+  . + .+|+|+|+++             .++.++.+|+..    ++++ ++||+|+. 
T Consensus        72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~-~~~D~v~~-  149 (230)
T 1fbn_A           72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIV-EKVDVIYE-  149 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTS-CCEEEEEE-
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccC-ccEEEEEE-
Confidence            345789999999999998877  2 3 6999999998             367889999987    7776 78999982 


Q ss_pred             ccccccCH---HHHHHHHHHhccCC
Q psy10644        175 LSLMGTDL---AACIKEANRILKLG  196 (196)
Q Consensus       175 ~~lh~~d~---~~~l~e~~rvLkpg  196 (196)
                         +..++   ..+++++.++||||
T Consensus       150 ---~~~~~~~~~~~l~~~~~~Lkpg  171 (230)
T 1fbn_A          150 ---DVAQPNQAEILIKNAKWFLKKG  171 (230)
T ss_dssp             ---CCCSTTHHHHHHHHHHHHEEEE
T ss_pred             ---ecCChhHHHHHHHHHHHhCCCC
Confidence               12344   77899999999986

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.24  E-value=1.1e-11  Score=99.53  Aligned_cols=79  Identities=19%  Similarity=0.281  Sum_probs=62.7

Q ss_pred             CCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC---------------------CCceEEEecCCC-CC--CCCCcee
Q psy10644        118 GRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA---------------------LNERVTSCDMTR-TP--LKPYSVD  169 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~---------------------~~~~~~~~d~~~-lp--~~~~sfD  169 (196)
                      ++.+|||||||+|.++..|    ++..|+|+|+++                     .++.++++|+.. ++  +++++||
T Consensus        46 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~D  125 (235)
T 3ckk_A           46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLT  125 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCEE
T ss_pred             CCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCee
Confidence            4678999999999998887    356899999985                     368899999976 66  7889999


Q ss_pred             eEeeccccccc---------CHHHHHHHHHHhccCC
Q psy10644        170 VAVFCLSLMGT---------DLAACIKEANRILKLG  196 (196)
Q Consensus       170 ~Vi~~~~lh~~---------d~~~~l~e~~rvLkpg  196 (196)
                      .|++++.-.+.         ....++++++++||||
T Consensus       126 ~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpG  161 (235)
T 3ckk_A          126 KMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVG  161 (235)
T ss_dssp             EEEEESCC-----------CCCHHHHHHHHHHEEEE
T ss_pred             EEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCC
Confidence            99876654221         1157999999999997

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.23  E-value=3.2e-11  Score=102.00  Aligned_cols=79  Identities=18%  Similarity=0.159  Sum_probs=66.2

Q ss_pred             CCCCEEEEEcCCCchhHhhc--cC-CeEEEEeCCC---------------CCceEEEecCCCCCCCCCceeeEeecccc-
Q psy10644        117 KGRLVIADLGCGEAKLAAEL--TQ-HKVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDVAVFCLSL-  177 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l--~~-~~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l-  177 (196)
                      .++.+|||||||+|.++..+  .+ .+|+|+|+++               .++.++.+|+++++++ ++||+|++...+ 
T Consensus        49 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~~  127 (348)
T 2y1w_A           49 FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPMGY  127 (348)
T ss_dssp             TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEEECCCBT
T ss_pred             CCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCCCC-CceeEEEEeCchh
Confidence            35789999999999998887  23 4999999997               3588999999988775 689999998877 


Q ss_pred             ccc--CHHHHHHHHHHhccCC
Q psy10644        178 MGT--DLAACIKEANRILKLG  196 (196)
Q Consensus       178 h~~--d~~~~l~e~~rvLkpg  196 (196)
                      |..  +...++.+++++||||
T Consensus       128 ~~~~~~~~~~l~~~~~~Lkpg  148 (348)
T 2y1w_A          128 MLFNERMLESYLHAKKYLKPS  148 (348)
T ss_dssp             TBTTTSHHHHHHHGGGGEEEE
T ss_pred             cCChHHHHHHHHHHHhhcCCC
Confidence            443  6788999999999986

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.23  E-value=2.3e-11  Score=94.84  Aligned_cols=77  Identities=16%  Similarity=0.070  Sum_probs=63.5

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC---------------CCceEEEecCCCCCCCCCceeeEeecccc
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDVAVFCLSL  177 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l  177 (196)
                      ...++.+|||||||+|.++..+  .+.+|+++|+++               .++.++.+|+...+.++++||+|++..++
T Consensus        74 ~~~~~~~vLdiG~G~G~~~~~la~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~~  153 (210)
T 3lbf_A           74 ELTPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAP  153 (210)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEESSBC
T ss_pred             CCCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCCccEEEEccch
Confidence            4455789999999999998888  467999999998               35889999998766667899999999999


Q ss_pred             cccCHHHHHHHHHHhccCC
Q psy10644        178 MGTDLAACIKEANRILKLG  196 (196)
Q Consensus       178 h~~d~~~~l~e~~rvLkpg  196 (196)
                      |+..     .++.++||||
T Consensus       154 ~~~~-----~~~~~~L~pg  167 (210)
T 3lbf_A          154 PEIP-----TALMTQLDEG  167 (210)
T ss_dssp             SSCC-----THHHHTEEEE
T ss_pred             hhhh-----HHHHHhcccC
Confidence            6542     1588999986

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.22  E-value=2.4e-11  Score=103.13  Aligned_cols=77  Identities=13%  Similarity=0.145  Sum_probs=64.8

Q ss_pred             CCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC----------------CCceEEEecCCCC--CCCCCceeeEeecc
Q psy10644        118 GRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA----------------LNERVTSCDMTRT--PLKPYSVDVAVFCL  175 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~----------------~~~~~~~~d~~~l--p~~~~sfD~Vi~~~  175 (196)
                      +..+|||||||+|.++..+    ++.+|+++|+ +                .++.++.+|+...  |++ ++||+|++..
T Consensus       179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p-~~~D~v~~~~  256 (363)
T 3dp7_A          179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP-TGFDAVWMSQ  256 (363)
T ss_dssp             CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCC-CCCSEEEEES
T ss_pred             CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCC-CCcCEEEEec
Confidence            4679999999999998877    4679999998 5                2588999999775  566 7899999999


Q ss_pred             ccccc---CHHHHHHHHHHhccCC
Q psy10644        176 SLMGT---DLAACIKEANRILKLG  196 (196)
Q Consensus       176 ~lh~~---d~~~~l~e~~rvLkpg  196 (196)
                      +||..   +...+|++++++||||
T Consensus       257 vlh~~~~~~~~~~l~~~~~~L~pg  280 (363)
T 3dp7_A          257 FLDCFSEEEVISILTRVAQSIGKD  280 (363)
T ss_dssp             CSTTSCHHHHHHHHHHHHHHCCTT
T ss_pred             hhhhCCHHHHHHHHHHHHHhcCCC
Confidence            99744   3468899999999997

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.22  E-value=1.1e-10  Score=96.00  Aligned_cols=78  Identities=14%  Similarity=0.142  Sum_probs=61.4

Q ss_pred             CCEEEEEcCCCch----hHhhc----c----CCeEEEEeCCC-------C------------------------------
Q psy10644        119 RLVIADLGCGEAK----LAAEL----T----QHKVHSLDLVA-------L------------------------------  149 (196)
Q Consensus       119 ~~~ILDlGCG~G~----~a~~l----~----~~~v~giDls~-------~------------------------------  149 (196)
                      ..+|+|+|||||.    ++..|    .    +.+|+|+|+|+       .                              
T Consensus       106 ~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~  185 (274)
T 1af7_A          106 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGL  185 (274)
T ss_dssp             CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSE
T ss_pred             CcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCc
Confidence            5799999999998    44333    2    35999999997       1                              


Q ss_pred             ---------CceEEEecCCCCCCC-CCceeeEeecccccccC---HHHHHHHHHHhccCC
Q psy10644        150 ---------NERVTSCDMTRTPLK-PYSVDVAVFCLSLMGTD---LAACIKEANRILKLG  196 (196)
Q Consensus       150 ---------~~~~~~~d~~~lp~~-~~sfD~Vi~~~~lh~~d---~~~~l~e~~rvLkpg  196 (196)
                               ++.|.++|+...|++ .+.||+|+|..+|++.+   ..+++++++++||||
T Consensus       186 ~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pg  245 (274)
T 1af7_A          186 VRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPD  245 (274)
T ss_dssp             EEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEE
T ss_pred             eeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCC
Confidence                     256778888776665 57899999999996553   368999999999997

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.22  E-value=6.9e-11  Score=99.42  Aligned_cols=78  Identities=18%  Similarity=0.137  Sum_probs=64.5

Q ss_pred             CCEEEEEcCCCchhHhhc----cCCeEEEEeCCC---------------CCceEEEecCCCCC-CCCCceeeEeeccccc
Q psy10644        119 RLVIADLGCGEAKLAAEL----TQHKVHSLDLVA---------------LNERVTSCDMTRTP-LKPYSVDVAVFCLSLM  178 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l----~~~~v~giDls~---------------~~~~~~~~d~~~lp-~~~~sfD~Vi~~~~lh  178 (196)
                      ..+|||||||+|.++..+    ++.+++++|+..               .++.++.+|+...+ +.++.||+|++..++|
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~vlh  259 (352)
T 3mcz_A          180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLNDCLH  259 (352)
T ss_dssp             CCEEEEETCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEESCGG
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEEEEecccc
Confidence            679999999999998877    467999999943               24889999997765 2346699999999997


Q ss_pred             cc-C--HHHHHHHHHHhccCC
Q psy10644        179 GT-D--LAACIKEANRILKLG  196 (196)
Q Consensus       179 ~~-d--~~~~l~e~~rvLkpg  196 (196)
                      +. +  ...+|++++++||||
T Consensus       260 ~~~~~~~~~~l~~~~~~L~pg  280 (352)
T 3mcz_A          260 YFDAREAREVIGHAAGLVKPG  280 (352)
T ss_dssp             GSCHHHHHHHHHHHHHTEEEE
T ss_pred             cCCHHHHHHHHHHHHHHcCCC
Confidence            54 3  478999999999986

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.21  E-value=7.3e-11  Score=94.63  Aligned_cols=76  Identities=16%  Similarity=0.050  Sum_probs=62.1

Q ss_pred             CCEEEEEcCCCchhHhhc--c------CCeEEEEeCCC----------CCceEEEecCCCC---CCCC-CceeeEeeccc
Q psy10644        119 RLVIADLGCGEAKLAAEL--T------QHKVHSLDLVA----------LNERVTSCDMTRT---PLKP-YSVDVAVFCLS  176 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l--~------~~~v~giDls~----------~~~~~~~~d~~~l---p~~~-~sfD~Vi~~~~  176 (196)
                      +.+|||||||+|..+..|  .      +.+|+|+|+++          .++.++++|+...   +..+ .+||+|++..+
T Consensus        82 ~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~~  161 (236)
T 2bm8_A           82 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDNA  161 (236)
T ss_dssp             CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEESS
T ss_pred             CCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEECCc
Confidence            569999999999987776  2      57999999998          2588999999774   5433 47999887654


Q ss_pred             ccccCHHHHHHHHHH-hccCC
Q psy10644        177 LMGTDLAACIKEANR-ILKLG  196 (196)
Q Consensus       177 lh~~d~~~~l~e~~r-vLkpg  196 (196)
                       | .+...+|.++.| +||||
T Consensus       162 -~-~~~~~~l~~~~r~~LkpG  180 (236)
T 2bm8_A          162 -H-ANTFNIMKWAVDHLLEEG  180 (236)
T ss_dssp             -C-SSHHHHHHHHHHHTCCTT
T ss_pred             -h-HhHHHHHHHHHHhhCCCC
Confidence             5 488899999998 99997

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.20  E-value=6.9e-12  Score=95.66  Aligned_cols=79  Identities=15%  Similarity=0.130  Sum_probs=63.1

Q ss_pred             CCCEEEEEcCCCchhHhhc--c-CCeEEEEeCCC----------------CCceEEEecCCCC----CCCCCceeeEeec
Q psy10644        118 GRLVIADLGCGEAKLAAEL--T-QHKVHSLDLVA----------------LNERVTSCDMTRT----PLKPYSVDVAVFC  174 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l--~-~~~v~giDls~----------------~~~~~~~~d~~~l----p~~~~sfD~Vi~~  174 (196)
                      ++.+|||+|||+|.++..+  . ..+|+|+|+++                .++.++.+|+.+.    +.++++||+|++.
T Consensus        44 ~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~  123 (187)
T 2fhp_A           44 DGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLD  123 (187)
T ss_dssp             SSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEEC
Confidence            4679999999999998866  2 35999999998                2478888888652    2236789999998


Q ss_pred             ccccccCHHHHHHHH--HHhccCC
Q psy10644        175 LSLMGTDLAACIKEA--NRILKLG  196 (196)
Q Consensus       175 ~~lh~~d~~~~l~e~--~rvLkpg  196 (196)
                      ..++..+....+..+  .++||||
T Consensus       124 ~~~~~~~~~~~~~~l~~~~~L~~g  147 (187)
T 2fhp_A          124 PPYAKQEIVSQLEKMLERQLLTNE  147 (187)
T ss_dssp             CCGGGCCHHHHHHHHHHTTCEEEE
T ss_pred             CCCCchhHHHHHHHHHHhcccCCC
Confidence            887655778888888  8899986

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.20  E-value=9.5e-12  Score=97.20  Aligned_cols=78  Identities=21%  Similarity=0.047  Sum_probs=62.3

Q ss_pred             CCEEEEEcCCCchhHhhc--cC-CeEEEEeCCC-----------------CCceEEEecCCCCC--CCCCc-eeeEeecc
Q psy10644        119 RLVIADLGCGEAKLAAEL--TQ-HKVHSLDLVA-----------------LNERVTSCDMTRTP--LKPYS-VDVAVFCL  175 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l--~~-~~v~giDls~-----------------~~~~~~~~d~~~lp--~~~~s-fD~Vi~~~  175 (196)
                      +.+|||+|||+|.++..+  .+ .+|+|+|+++                 .++.++.+|+.++.  +++++ ||+|++..
T Consensus        54 ~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  133 (201)
T 2ift_A           54 QSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLDP  133 (201)
T ss_dssp             TCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEECC
T ss_pred             CCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEECC
Confidence            679999999999998875  33 4899999997                 15688888876542  24678 99999988


Q ss_pred             cccccCHHHHHHHH--HHhccCC
Q psy10644        176 SLMGTDLAACIKEA--NRILKLG  196 (196)
Q Consensus       176 ~lh~~d~~~~l~e~--~rvLkpg  196 (196)
                      .++..+...+++++  .|+||||
T Consensus       134 ~~~~~~~~~~l~~~~~~~~Lkpg  156 (201)
T 2ift_A          134 PFHFNLAEQAISLLCENNWLKPN  156 (201)
T ss_dssp             CSSSCHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCccHHHHHHHHHhcCccCCC
Confidence            87755778899999  6789986

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.20  E-value=1.4e-11  Score=97.94  Aligned_cols=80  Identities=16%  Similarity=0.099  Sum_probs=63.3

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC-------------CCceEEEecCCC---CCCCCCceeeEee
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA-------------LNERVTSCDMTR---TPLKPYSVDVAVF  173 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~-------------~~~~~~~~d~~~---lp~~~~sfD~Vi~  173 (196)
                      ...++.+|||+|||+|.++..+     ...+|+|+|+++             .++.++.+|+..   +++.+++||+|++
T Consensus        74 ~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~  153 (233)
T 2ipx_A           74 HIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFA  153 (233)
T ss_dssp             CCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEE
T ss_pred             cCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEE
Confidence            3445789999999999998887     136999999995             578899999976   4556789999998


Q ss_pred             cccccccC-HHHHHHHHHHhccCC
Q psy10644        174 CLSLMGTD-LAACIKEANRILKLG  196 (196)
Q Consensus       174 ~~~lh~~d-~~~~l~e~~rvLkpg  196 (196)
                      ...  ..+ ...++.++.++||||
T Consensus       154 ~~~--~~~~~~~~~~~~~~~Lkpg  175 (233)
T 2ipx_A          154 DVA--QPDQTRIVALNAHTFLRNG  175 (233)
T ss_dssp             CCC--CTTHHHHHHHHHHHHEEEE
T ss_pred             cCC--CccHHHHHHHHHHHHcCCC
Confidence            554  233 355688999999986

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.20  E-value=2.1e-11  Score=98.64  Aligned_cols=77  Identities=18%  Similarity=0.121  Sum_probs=63.8

Q ss_pred             CCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC---------------CCceEEEecCCCCCCC---CCceeeEeec
Q psy10644        117 KGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA---------------LNERVTSCDMTRTPLK---PYSVDVAVFC  174 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~---------------~~~~~~~~d~~~lp~~---~~sfD~Vi~~  174 (196)
                      .++.+|||||||+|..+..+    ++.+|+++|+++               .++.++.+|+++++..   +++||+|++.
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~  158 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR  158 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence            35789999999999887766    467999999998               3689999999877643   4799999986


Q ss_pred             ccccccCHHHHHHHHHHhccCC
Q psy10644        175 LSLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       175 ~~lh~~d~~~~l~e~~rvLkpg  196 (196)
                      .+   .++..++.++.++||||
T Consensus       159 a~---~~~~~ll~~~~~~Lkpg  177 (249)
T 3g89_A          159 AV---APLCVLSELLLPFLEVG  177 (249)
T ss_dssp             SS---CCHHHHHHHHGGGEEEE
T ss_pred             Cc---CCHHHHHHHHHHHcCCC
Confidence            53   36789999999999986

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.20  E-value=6.1e-11  Score=93.66  Aligned_cols=80  Identities=20%  Similarity=0.157  Sum_probs=64.2

Q ss_pred             CCCCEEEEEcCC-CchhHhhc--c-CCeEEEEeCCC--------------CCceEEEecCCCC-CCCCCceeeEeecccc
Q psy10644        117 KGRLVIADLGCG-EAKLAAEL--T-QHKVHSLDLVA--------------LNERVTSCDMTRT-PLKPYSVDVAVFCLSL  177 (196)
Q Consensus       117 ~~~~~ILDlGCG-~G~~a~~l--~-~~~v~giDls~--------------~~~~~~~~d~~~l-p~~~~sfD~Vi~~~~l  177 (196)
                      .++.+|||+||| +|.++..+  . +.+|+|+|+++              .++.++.+|+..+ ++++++||+|++...+
T Consensus        54 ~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~npp~  133 (230)
T 3evz_A           54 RGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAPPY  133 (230)
T ss_dssp             CSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECCCC
T ss_pred             CCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECCCC
Confidence            457899999999 99998887  3 67999999998              2588999997543 5667899999988666


Q ss_pred             ccc-C-------------------HHHHHHHHHHhccCC
Q psy10644        178 MGT-D-------------------LAACIKEANRILKLG  196 (196)
Q Consensus       178 h~~-d-------------------~~~~l~e~~rvLkpg  196 (196)
                      +.. +                   ...+++++.++||||
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg  172 (230)
T 3evz_A          134 YDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPG  172 (230)
T ss_dssp             C---------------CCSSSCHHHHHHHHHHGGGEEEE
T ss_pred             cCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCC
Confidence            432 1                   478999999999986

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.20  E-value=1.6e-10  Score=97.39  Aligned_cols=78  Identities=21%  Similarity=0.297  Sum_probs=63.2

Q ss_pred             CCCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC----------------CCceEEEecCCCCCCCCCceeeEeecc
Q psy10644        116 SKGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAVFCL  175 (196)
Q Consensus       116 ~~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~  175 (196)
                      ..++.+|||||||+|.++..+    ++.+++++|+ +                .++.++.+|+.+ +++. .||+|++..
T Consensus       181 ~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~-~~D~v~~~~  257 (360)
T 1tw3_A          181 WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-PLPR-KADAIILSF  257 (360)
T ss_dssp             CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSS-CEEEEEEES
T ss_pred             CccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-CCCC-CccEEEEcc
Confidence            345789999999999998877    3568999998 5                268899999865 4444 499999999


Q ss_pred             ccccc-CH--HHHHHHHHHhccCC
Q psy10644        176 SLMGT-DL--AACIKEANRILKLG  196 (196)
Q Consensus       176 ~lh~~-d~--~~~l~e~~rvLkpg  196 (196)
                      ++|.. +.  ..++++++++||||
T Consensus       258 vl~~~~~~~~~~~l~~~~~~L~pg  281 (360)
T 1tw3_A          258 VLLNWPDHDAVRILTRCAEALEPG  281 (360)
T ss_dssp             CGGGSCHHHHHHHHHHHHHTEEEE
T ss_pred             cccCCCHHHHHHHHHHHHHhcCCC
Confidence            99754 43  58999999999986

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.20  E-value=4.8e-12  Score=96.16  Aligned_cols=91  Identities=14%  Similarity=0.039  Sum_probs=67.2

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc--c-CCeEEEEeCCC----------------CCceEEEecCCC-CCC
Q psy10644        104 VDIIIKSIQERESKGRLVIADLGCGEAKLAAEL--T-QHKVHSLDLVA----------------LNERVTSCDMTR-TPL  163 (196)
Q Consensus       104 ~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l--~-~~~v~giDls~----------------~~~~~~~~d~~~-lp~  163 (196)
                      .+.+++.+..  ..++.+|||+|||+|.++..+  . ..+|+|+|+++                .++.++.+|+.+ ++.
T Consensus        19 ~~~~~~~l~~--~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~   96 (177)
T 2esr_A           19 RGAIFNMIGP--YFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDC   96 (177)
T ss_dssp             HHHHHHHHCS--CCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHH
T ss_pred             HHHHHHHHHh--hcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHh
Confidence            3444444432  234679999999999998877  3 35999999998                147788888866 444


Q ss_pred             CCCceeeEeecccccccCHHHHHHHHH--HhccCC
Q psy10644        164 KPYSVDVAVFCLSLMGTDLAACIKEAN--RILKLG  196 (196)
Q Consensus       164 ~~~sfD~Vi~~~~lh~~d~~~~l~e~~--rvLkpg  196 (196)
                      .++.||+|++...++......+++.+.  ++||||
T Consensus        97 ~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~L~~g  131 (177)
T 2esr_A           97 LTGRFDLVFLDPPYAKETIVATIEALAAKNLLSEQ  131 (177)
T ss_dssp             BCSCEEEEEECCSSHHHHHHHHHHHHHHTTCEEEE
T ss_pred             hcCCCCEEEECCCCCcchHHHHHHHHHhCCCcCCC
Confidence            456799999987776556677788887  899986

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.19  E-value=2.4e-12  Score=99.91  Aligned_cols=79  Identities=16%  Similarity=0.100  Sum_probs=56.9

Q ss_pred             CCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCCC--------------CceEEEecCCCCCCCC-----CceeeEee
Q psy10644        117 KGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVAL--------------NERVTSCDMTRTPLKP-----YSVDVAVF  173 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~~--------------~~~~~~~d~~~lp~~~-----~sfD~Vi~  173 (196)
                      .++.+|||+|||+|.++..+    ++.+|+|+|+++.              ++.++++|+.. ++++     ++||+|++
T Consensus        29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~fD~i~~  107 (215)
T 4dzr_A           29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIE-WLIERAERGRPWHAIVS  107 (215)
T ss_dssp             CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHH-HHHHHHHTTCCBSEEEE
T ss_pred             CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHh-hhhhhhhccCcccEEEE
Confidence            34789999999999998877    3559999999982              34556666655 5555     89999999


Q ss_pred             ccccccc-C--------------------------HHHHHHHHHHhccCC
Q psy10644        174 CLSLMGT-D--------------------------LAACIKEANRILKLG  196 (196)
Q Consensus       174 ~~~lh~~-d--------------------------~~~~l~e~~rvLkpg  196 (196)
                      ...++.. +                          +..++++++++||||
T Consensus       108 npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg  157 (215)
T 4dzr_A          108 NPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARG  157 (215)
T ss_dssp             CCCCCC------------------------CTTHHHHHHHTCCGGGBCSS
T ss_pred             CCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCC
Confidence            6554321 1                          178899999999997

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.18  E-value=2.6e-11  Score=94.75  Aligned_cols=78  Identities=14%  Similarity=0.027  Sum_probs=63.8

Q ss_pred             CCEEEEEcCCCchhHhhc--cC-CeEEEEeCCC---------------CCceEEEecCCC-CCCCCCceeeEeecccccc
Q psy10644        119 RLVIADLGCGEAKLAAEL--TQ-HKVHSLDLVA---------------LNERVTSCDMTR-TPLKPYSVDVAVFCLSLMG  179 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l--~~-~~v~giDls~---------------~~~~~~~~d~~~-lp~~~~sfD~Vi~~~~lh~  179 (196)
                      +.+|||+|||+|.++..+  .+ .+|+|+|+++               .++.++++|+.. ++..+++||+|++...+|.
T Consensus        55 ~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~~~  134 (202)
T 2fpo_A           55 DAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFRR  134 (202)
T ss_dssp             TCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSST
T ss_pred             CCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCCCC
Confidence            679999999999998875  33 4899999998               267889999866 5666789999999887775


Q ss_pred             cCHHHHHHHHHH--hccCC
Q psy10644        180 TDLAACIKEANR--ILKLG  196 (196)
Q Consensus       180 ~d~~~~l~e~~r--vLkpg  196 (196)
                      .+...+++++.+  +||||
T Consensus       135 ~~~~~~l~~l~~~~~L~pg  153 (202)
T 2fpo_A          135 GLLEETINLLEDNGWLADE  153 (202)
T ss_dssp             TTHHHHHHHHHHTTCEEEE
T ss_pred             CcHHHHHHHHHhcCccCCC
Confidence            578888998876  59986

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.18  E-value=4.3e-11  Score=93.00  Aligned_cols=85  Identities=18%  Similarity=0.153  Sum_probs=66.1

Q ss_pred             HHHHHHhhcCCCCCEEEEEcCCCchhHhhc--c-CCeEEEEeCCC---------------CCceEEEecCCCCCCCCCce
Q psy10644        107 IIKSIQERESKGRLVIADLGCGEAKLAAEL--T-QHKVHSLDLVA---------------LNERVTSCDMTRTPLKPYSV  168 (196)
Q Consensus       107 ~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l--~-~~~v~giDls~---------------~~~~~~~~d~~~lp~~~~sf  168 (196)
                      +++.+.... .++.+|||+|||+|.++..+  . ..+|+|+|+++               .++.+..+|+...  .+++|
T Consensus        50 ~~~~l~~~~-~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~--~~~~f  126 (205)
T 3grz_A           50 AMLGIERAM-VKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLAD--VDGKF  126 (205)
T ss_dssp             HHHHHHHHC-SSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTT--CCSCE
T ss_pred             HHHHHHHhc-cCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEecccccc--CCCCc
Confidence            344443322 34789999999999998888  2 34999999998               2488899998664  35899


Q ss_pred             eeEeecccccccCHHHHHHHHHHhccCC
Q psy10644        169 DVAVFCLSLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       169 D~Vi~~~~lh~~d~~~~l~e~~rvLkpg  196 (196)
                      |+|++...++.  ...+++++.++||||
T Consensus       127 D~i~~~~~~~~--~~~~l~~~~~~L~~g  152 (205)
T 3grz_A          127 DLIVANILAEI--LLDLIPQLDSHLNED  152 (205)
T ss_dssp             EEEEEESCHHH--HHHHGGGSGGGEEEE
T ss_pred             eEEEECCcHHH--HHHHHHHHHHhcCCC
Confidence            99999887754  478899999999986

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.17  E-value=8.8e-12  Score=111.94  Aligned_cols=66  Identities=17%  Similarity=0.237  Sum_probs=55.9

Q ss_pred             CCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC---------------CCceEEEecCCCC--CCCCCceeeEeecccc-
Q psy10644        118 GRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA---------------LNERVTSCDMTRT--PLKPYSVDVAVFCLSL-  177 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~---------------~~~~~~~~d~~~l--p~~~~sfD~Vi~~~~l-  177 (196)
                      .+.+|||||||.|.++..|  .|++|+|+|+++               .++.+.+++++++  ++++++||+|+|..+| 
T Consensus        66 ~~~~vLDvGCG~G~~~~~la~~ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~~e  145 (569)
T 4azs_A           66 RPLNVLDLGCAQGFFSLSLASKGATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSVFH  145 (569)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEESCHH
T ss_pred             CCCeEEEECCCCcHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECcchh
Confidence            3679999999999999999  688999999998               2578889998887  5678899999999999 


Q ss_pred             cccCHH
Q psy10644        178 MGTDLA  183 (196)
Q Consensus       178 h~~d~~  183 (196)
                      |..|+.
T Consensus       146 hv~~~~  151 (569)
T 4azs_A          146 HIVHLH  151 (569)
T ss_dssp             HHHHHH
T ss_pred             cCCCHH
Confidence            544543

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.16  E-value=6.8e-11  Score=97.92  Aligned_cols=89  Identities=15%  Similarity=0.167  Sum_probs=62.4

Q ss_pred             HHHHHHHhhcC-CCCCEEEEEcCCCchhHhhc--cC-CeEEEEeCCCCCc--------eEE---EecCCCCC---CCCCc
Q psy10644        106 IIIKSIQERES-KGRLVIADLGCGEAKLAAEL--TQ-HKVHSLDLVALNE--------RVT---SCDMTRTP---LKPYS  167 (196)
Q Consensus       106 ~~~~~l~~~~~-~~~~~ILDlGCG~G~~a~~l--~~-~~v~giDls~~~~--------~~~---~~d~~~lp---~~~~s  167 (196)
                      .+...+..... .++.+|||||||||.++..+  .+ .+|+|+|+++..+        .+.   ..++..++   ++..+
T Consensus        72 Kl~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~~  151 (291)
T 3hp7_A           72 KLEKALAVFNLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGL  151 (291)
T ss_dssp             HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTCC
T ss_pred             HHHHHHHhcCCCccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCCC
Confidence            34444544333 24679999999999999877  33 4999999998322        221   23443333   34456


Q ss_pred             eeeEeecccccccCHHHHHHHHHHhccCC
Q psy10644        168 VDVAVFCLSLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       168 fD~Vi~~~~lh~~d~~~~l~e~~rvLkpg  196 (196)
                      ||+|++..++|.  ...+|.+++|+||||
T Consensus       152 fD~v~~d~sf~s--l~~vL~e~~rvLkpG  178 (291)
T 3hp7_A          152 PSFASIDVSFIS--LNLILPALAKILVDG  178 (291)
T ss_dssp             CSEEEECCSSSC--GGGTHHHHHHHSCTT
T ss_pred             CCEEEEEeeHhh--HHHHHHHHHHHcCcC
Confidence            999999887764  488999999999997

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.16  E-value=6.7e-11  Score=101.20  Aligned_cols=81  Identities=20%  Similarity=0.249  Sum_probs=64.4

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC-------------C-----CceEEEecCCCCCCCCCceeeEe
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA-------------L-----NERVTSCDMTRTPLKPYSVDVAV  172 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~-------------~-----~~~~~~~d~~~lp~~~~sfD~Vi  172 (196)
                      ....+.+|||+|||+|.++..+    ++.+|+|+|+++             .     ++.+..+|+.. ++++++||+|+
T Consensus       219 ~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~-~~~~~~fD~Ii  297 (375)
T 4dcm_A          219 PENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-GVEPFRFNAVL  297 (375)
T ss_dssp             CCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTT-TCCTTCEEEEE
T ss_pred             cccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhc-cCCCCCeeEEE
Confidence            3344589999999999998888    367999999998             1     36678999876 56778999999


Q ss_pred             eccccccc------CHHHHHHHHHHhccCC
Q psy10644        173 FCLSLMGT------DLAACIKEANRILKLG  196 (196)
Q Consensus       173 ~~~~lh~~------d~~~~l~e~~rvLkpg  196 (196)
                      +...+|..      ....+|+++.++||||
T Consensus       298 ~nppfh~~~~~~~~~~~~~l~~~~~~Lkpg  327 (375)
T 4dcm_A          298 CNPPFHQQHALTDNVAWEMFHHARRCLKIN  327 (375)
T ss_dssp             ECCCC-------CCHHHHHHHHHHHHEEEE
T ss_pred             ECCCcccCcccCHHHHHHHHHHHHHhCCCC
Confidence            99888632      2347899999999986

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.16  E-value=8.1e-11  Score=89.51  Aligned_cols=79  Identities=27%  Similarity=0.294  Sum_probs=63.3

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC----------------CCceEEEecCCCCCCCC-CceeeEeecc
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA----------------LNERVTSCDMTRTPLKP-YSVDVAVFCL  175 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~----------------~~~~~~~~d~~~lp~~~-~sfD~Vi~~~  175 (196)
                      ...++.+|||+|||+|.++..+  ...+|+++|+++                .++.+..+|+.. +++. +.||+|++..
T Consensus        30 ~~~~~~~vldiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~~~  108 (192)
T 1l3i_A           30 EPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE-ALCKIPDIDIAVVGG  108 (192)
T ss_dssp             CCCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH-HHTTSCCEEEEEESC
T ss_pred             CCCCCCEEEEECCCCCHHHHHHHHhcCEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHH-hcccCCCCCEEEECC
Confidence            3445789999999999998888  236999999997                257788888765 3333 5899999987


Q ss_pred             cccccCHHHHHHHHHHhccCC
Q psy10644        176 SLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       176 ~lh~~d~~~~l~e~~rvLkpg  196 (196)
                      +++  +...+++++.++||||
T Consensus       109 ~~~--~~~~~l~~~~~~l~~g  127 (192)
T 1l3i_A          109 SGG--ELQEILRIIKDKLKPG  127 (192)
T ss_dssp             CTT--CHHHHHHHHHHTEEEE
T ss_pred             chH--HHHHHHHHHHHhcCCC
Confidence            764  4689999999999986

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=99.16  E-value=1.1e-10  Score=98.74  Aligned_cols=74  Identities=18%  Similarity=0.204  Sum_probs=62.6

Q ss_pred             CCEEEEEcCCCchhHhhc----cCCeEEEEeCCC--------CCceEEEecCCCCCCCCCceeeEeeccccccc-CHH--
Q psy10644        119 RLVIADLGCGEAKLAAEL----TQHKVHSLDLVA--------LNERVTSCDMTRTPLKPYSVDVAVFCLSLMGT-DLA--  183 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l----~~~~v~giDls~--------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~~-d~~--  183 (196)
                      ..+|||||||+|.++..+    ++.+++++|++.        .++.++.+|+.. +++  .||+|++..+||+. +..  
T Consensus       194 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~-~~~--~~D~v~~~~vlh~~~d~~~~  270 (358)
T 1zg3_A          194 LESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGGDMFK-SIP--SADAVLLKWVLHDWNDEQSL  270 (358)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCCCSSEEEEECCTTT-CCC--CCSEEEEESCGGGSCHHHHH
T ss_pred             CCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhcccCCCcEEEeCccCC-CCC--CceEEEEcccccCCCHHHHH
Confidence            579999999999998887    456899999843        368899999977 666  49999999999754 655  


Q ss_pred             HHHHHHHHhccC
Q psy10644        184 ACIKEANRILKL  195 (196)
Q Consensus       184 ~~l~e~~rvLkp  195 (196)
                      .+|++++++|||
T Consensus       271 ~~l~~~~~~L~p  282 (358)
T 1zg3_A          271 KILKNSKEAISH  282 (358)
T ss_dssp             HHHHHHHHHTGG
T ss_pred             HHHHHHHHhCCC
Confidence            999999999999

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.15  E-value=8.8e-11  Score=88.78  Aligned_cols=74  Identities=16%  Similarity=0.254  Sum_probs=62.3

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC---------------CCceEEEecCCCCCCCCCceeeEeecccc
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDVAVFCLSL  177 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l  177 (196)
                      ...++.+|||+|||+|.++..+  .+.+|+|+|+++               .++.++.+|+.. ++++++||+|++..+ 
T Consensus        32 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~i~~~~~-  109 (183)
T 2yxd_A           32 NLNKDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED-VLDKLEFNKAFIGGT-  109 (183)
T ss_dssp             CCCTTCEEEEESCCCSHHHHHHHTTSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH-HGGGCCCSEEEECSC-
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc-cccCCCCcEEEECCc-
Confidence            3345779999999999998888  456999999998               267888999876 677789999999888 


Q ss_pred             cccCHHHHHHHHHHh
Q psy10644        178 MGTDLAACIKEANRI  192 (196)
Q Consensus       178 h~~d~~~~l~e~~rv  192 (196)
                        .+...+++++.++
T Consensus       110 --~~~~~~l~~~~~~  122 (183)
T 2yxd_A          110 --KNIEKIIEILDKK  122 (183)
T ss_dssp             --SCHHHHHHHHHHT
T ss_pred             --ccHHHHHHHHhhC
Confidence              6788899999887

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.15  E-value=4.2e-11  Score=96.89  Aligned_cols=79  Identities=18%  Similarity=0.258  Sum_probs=63.1

Q ss_pred             CCCEEEEEcCCCchhHhhcc---CCeEEEEeCCC----------------CCceEEEecCCCCC--CCCCceeeEeeccc
Q psy10644        118 GRLVIADLGCGEAKLAAELT---QHKVHSLDLVA----------------LNERVTSCDMTRTP--LKPYSVDVAVFCLS  176 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l~---~~~v~giDls~----------------~~~~~~~~d~~~lp--~~~~sfD~Vi~~~~  176 (196)
                      ++.+|||+|||+|.++..+.   ..+|+|+|+++                .++.++.+|+.+++  +++++||+|+++..
T Consensus        49 ~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~npP  128 (259)
T 3lpm_A           49 RKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTCNPP  128 (259)
T ss_dssp             SCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEECCC
T ss_pred             CCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEEECCC
Confidence            47899999999999988882   23999999998                25889999998765  56789999999644


Q ss_pred             cc-c--------------------cCHHHHHHHHHHhccCC
Q psy10644        177 LM-G--------------------TDLAACIKEANRILKLG  196 (196)
Q Consensus       177 lh-~--------------------~d~~~~l~e~~rvLkpg  196 (196)
                      ++ .                    .+...+++++.++||||
T Consensus       129 y~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lkpg  169 (259)
T 3lpm_A          129 YFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQG  169 (259)
T ss_dssp             C-----------------------HHHHHHHHHHHHHEEEE
T ss_pred             CCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCC
Confidence            42 1                    13567999999999986

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.15  E-value=8.9e-11  Score=92.76  Aligned_cols=77  Identities=18%  Similarity=0.078  Sum_probs=61.8

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC-------------CCceEEEecCCCCCCCCCceeeEeecccccc
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA-------------LNERVTSCDMTRTPLKPYSVDVAVFCLSLMG  179 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~-------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~  179 (196)
                      ...++.+|||||||+|.++..+  .+.+|+|+|+++             .++.++.+|+.....++++||+|++..++|+
T Consensus        67 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~  146 (231)
T 1vbf_A           67 DLHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDRVVVWATAPT  146 (231)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEEEEESSBBSS
T ss_pred             CCCCCCEEEEEcCCCCHHHHHHHHHcCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCccEEEECCcHHH
Confidence            3445789999999999998888  457999999998             1688999998763334678999999999965


Q ss_pred             cCHHHHHHHHHHhccCC
Q psy10644        180 TDLAACIKEANRILKLG  196 (196)
Q Consensus       180 ~d~~~~l~e~~rvLkpg  196 (196)
                      ..     .++.++||||
T Consensus       147 ~~-----~~~~~~L~pg  158 (231)
T 1vbf_A          147 LL-----CKPYEQLKEG  158 (231)
T ss_dssp             CC-----HHHHHTEEEE
T ss_pred             HH-----HHHHHHcCCC
Confidence            42     3688999986

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.15  E-value=3.7e-11  Score=93.68  Aligned_cols=91  Identities=15%  Similarity=0.087  Sum_probs=67.7

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC--------------CCceEEEecCCCCCCCC
Q psy10644        104 VDIIIKSIQERESKGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA--------------LNERVTSCDMTRTPLKP  165 (196)
Q Consensus       104 ~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~--------------~~~~~~~~d~~~lp~~~  165 (196)
                      ++.+...+.... .+..+|||||||+|-++..+    ++.+|+++|+++              ...++..+|.... .+.
T Consensus        36 ld~fY~~~~~~l-~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~~d~~~~-~~~  113 (200)
T 3fzg_A           36 LNDFYTYVFGNI-KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKESD-VYK  113 (200)
T ss_dssp             HHHHHHHHHHHS-CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEEECCHHH-HTT
T ss_pred             HHHHHHHHHhhc-CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEEeccccc-CCC
Confidence            455544443332 23679999999999998888    356999999999              1224555666443 467


Q ss_pred             CceeeEeeccccccc-CHHHHHHHHHHhccCC
Q psy10644        166 YSVDVAVFCLSLMGT-DLAACIKEANRILKLG  196 (196)
Q Consensus       166 ~sfD~Vi~~~~lh~~-d~~~~l~e~~rvLkpg  196 (196)
                      +.||+|++..+||.. +.+..+..+++.||||
T Consensus       114 ~~~DvVLa~k~LHlL~~~~~al~~v~~~L~pg  145 (200)
T 3fzg_A          114 GTYDVVFLLKMLPVLKQQDVNILDFLQLFHTQ  145 (200)
T ss_dssp             SEEEEEEEETCHHHHHHTTCCHHHHHHTCEEE
T ss_pred             CCcChhhHhhHHHhhhhhHHHHHHHHHHhCCC
Confidence            899999999999877 6667788999999986

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.14  E-value=1.2e-10  Score=94.97  Aligned_cols=92  Identities=18%  Similarity=0.258  Sum_probs=67.9

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC---------------CCceEEEecCCCCCCC
Q psy10644        104 VDIIIKSIQERESKGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA---------------LNERVTSCDMTRTPLK  164 (196)
Q Consensus       104 ~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~---------------~~~~~~~~d~~~lp~~  164 (196)
                      ...+++.+......++.+|||+|||+|.++..+    ++.+|+++|+|+               .++.++.+|+.. +++
T Consensus        95 te~l~~~~l~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~-~~~  173 (276)
T 2b3t_A           95 TECLVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFS-ALA  173 (276)
T ss_dssp             HHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTG-GGT
T ss_pred             HHHHHHHHHHhcccCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhh-hcc
Confidence            445555544332234679999999999998877    367999999998               258888899866 345


Q ss_pred             CCceeeEeecccccc--------------------------cCHHHHHHHHHHhccCC
Q psy10644        165 PYSVDVAVFCLSLMG--------------------------TDLAACIKEANRILKLG  196 (196)
Q Consensus       165 ~~sfD~Vi~~~~lh~--------------------------~d~~~~l~e~~rvLkpg  196 (196)
                      +++||+|++...++.                          .+...++.++.++||||
T Consensus       174 ~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~Lkpg  231 (276)
T 2b3t_A          174 GQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSG  231 (276)
T ss_dssp             TCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEE
T ss_pred             cCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCC
Confidence            678999999743321                          14578899999999986

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.14  E-value=1e-10  Score=93.19  Aligned_cols=76  Identities=9%  Similarity=0.065  Sum_probs=62.3

Q ss_pred             CCEEEEEcCCCchhHhhc----cCCeEEEEeCCC----------------CCceEEEecCCCC-C-CCCCceeeEeeccc
Q psy10644        119 RLVIADLGCGEAKLAAEL----TQHKVHSLDLVA----------------LNERVTSCDMTRT-P-LKPYSVDVAVFCLS  176 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l----~~~~v~giDls~----------------~~~~~~~~d~~~l-p-~~~~sfD~Vi~~~~  176 (196)
                      +.+|||||||+|.++..+    ++.+|+++|+++                .++.++.+|+... + ..+++||+|++...
T Consensus        72 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~~~  151 (232)
T 3ntv_A           72 VKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFIDAA  151 (232)
T ss_dssp             CCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEETT
T ss_pred             CCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEcCc
Confidence            679999999999998887    356999999998                2689999998663 4 33689999986533


Q ss_pred             ccccCHHHHHHHHHHhccCC
Q psy10644        177 LMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       177 lh~~d~~~~l~e~~rvLkpg  196 (196)
                        ..+...+++++.++||||
T Consensus       152 --~~~~~~~l~~~~~~Lkpg  169 (232)
T 3ntv_A          152 --KAQSKKFFEIYTPLLKHQ  169 (232)
T ss_dssp             --SSSHHHHHHHHGGGEEEE
T ss_pred             --HHHHHHHHHHHHHhcCCC
Confidence              336788999999999986

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=99.13  E-value=1.8e-10  Score=96.03  Aligned_cols=90  Identities=14%  Similarity=0.107  Sum_probs=63.2

Q ss_pred             HHHHHHHHhhcCCCCCEEEEEcCCCchhHhhccC-CeEEEEeC----CC-------------CCceEEEe-cCCCCCCCC
Q psy10644        105 DIIIKSIQERESKGRLVIADLGCGEAKLAAELTQ-HKVHSLDL----VA-------------LNERVTSC-DMTRTPLKP  165 (196)
Q Consensus       105 ~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l~~-~~v~giDl----s~-------------~~~~~~~~-d~~~lp~~~  165 (196)
                      -.+.+.+......++.+|||||||+|.++..+.. .+|+|+|+    ++             .++.++++ |+..++  .
T Consensus        69 ~KL~~i~~~~~~~~g~~VLDlGcG~G~~s~~la~~~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~--~  146 (305)
T 2p41_A           69 AKLRWFVERNLVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIP--P  146 (305)
T ss_dssp             HHHHHHHHTTSSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSC--C
T ss_pred             HHHHHHHHcCCCCCCCEEEEEcCCCCHHHHHHHhcCCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCC--c
Confidence            3344434333334578999999999999998833 58999999    33             13566666 666554  5


Q ss_pred             CceeeEeeccccc---c-cCHH---HHHHHHHHhccCC
Q psy10644        166 YSVDVAVFCLSLM---G-TDLA---ACIKEANRILKLG  196 (196)
Q Consensus       166 ~sfD~Vi~~~~lh---~-~d~~---~~l~e~~rvLkpg  196 (196)
                      ++||+|+|..+++   . .+..   .+|.++.++||||
T Consensus       147 ~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpG  184 (305)
T 2p41_A          147 ERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNN  184 (305)
T ss_dssp             CCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTT
T ss_pred             CCCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCC
Confidence            6899999976643   2 2333   5899999999997

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.13  E-value=1.7e-10  Score=98.74  Aligned_cols=77  Identities=21%  Similarity=0.226  Sum_probs=63.1

Q ss_pred             CCEEEEEcCCCchhHhhc--cC-CeEEEEeCCC---------------CCceEEEecCCCCCCCCCceeeEeec---ccc
Q psy10644        119 RLVIADLGCGEAKLAAEL--TQ-HKVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDVAVFC---LSL  177 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l--~~-~~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~---~~l  177 (196)
                      +.+|||||||+|.++...  .| .+|+++|.|+               ..+.++.++++.+.++ +.||+||+-   ..|
T Consensus        84 ~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lp-e~~DvivsE~~~~~l  162 (376)
T 4hc4_A           84 GKTVLDVGAGTGILSIFCAQAGARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELP-EQVDAIVSEWMGYGL  162 (376)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCCBTTB
T ss_pred             CCEEEEeCCCccHHHHHHHHhCCCEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeecCC-ccccEEEeecccccc
Confidence            679999999999997766  34 4899999997               3589999999998886 689999983   334


Q ss_pred             ccc-CHHHHHHHHHHhccCC
Q psy10644        178 MGT-DLAACIKEANRILKLG  196 (196)
Q Consensus       178 h~~-d~~~~l~e~~rvLkpg  196 (196)
                      .+. ....++....|+||||
T Consensus       163 ~~e~~l~~~l~a~~r~Lkp~  182 (376)
T 4hc4_A          163 LHESMLSSVLHARTKWLKEG  182 (376)
T ss_dssp             TTTCSHHHHHHHHHHHEEEE
T ss_pred             cccchhhhHHHHHHhhCCCC
Confidence            333 7888999999999986

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.12  E-value=1.1e-10  Score=92.09  Aligned_cols=89  Identities=11%  Similarity=0.110  Sum_probs=65.5

Q ss_pred             HHHHHHHHhhcCCCCCEEEEEcCCCchhHhhcc-----CCeEEEEeCCC----------------CCceEEEecCCC-CC
Q psy10644        105 DIIIKSIQERESKGRLVIADLGCGEAKLAAELT-----QHKVHSLDLVA----------------LNERVTSCDMTR-TP  162 (196)
Q Consensus       105 ~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l~-----~~~v~giDls~----------------~~~~~~~~d~~~-lp  162 (196)
                      ..++..+.....  +.+|||||||+|..+..+.     +.+|+++|+++                .++.++.+|+.+ ++
T Consensus        47 ~~~l~~l~~~~~--~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~  124 (221)
T 3u81_A           47 GQIMDAVIREYS--PSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIP  124 (221)
T ss_dssp             HHHHHHHHHHHC--CSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGG
T ss_pred             HHHHHHHHHhcC--CCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHH
Confidence            344444433333  6799999999999988772     56999999998                248889998744 33


Q ss_pred             C-C----CCceeeEeeccccc-ccCHHHHHHHHHHhccCC
Q psy10644        163 L-K----PYSVDVAVFCLSLM-GTDLAACIKEANRILKLG  196 (196)
Q Consensus       163 ~-~----~~sfD~Vi~~~~lh-~~d~~~~l~e~~rvLkpg  196 (196)
                      . +    .++||+|++....+ ..+...++.++ ++||||
T Consensus       125 ~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~-~~Lkpg  163 (221)
T 3u81_A          125 QLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKC-GLLRKG  163 (221)
T ss_dssp             GTTTTSCCCCCSEEEECSCGGGHHHHHHHHHHT-TCCCTT
T ss_pred             HHHHhcCCCceEEEEEcCCcccchHHHHHHHhc-cccCCC
Confidence            2 2    27899999988774 44667788888 999997

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.12  E-value=1.7e-10  Score=91.54  Aligned_cols=76  Identities=11%  Similarity=0.012  Sum_probs=62.2

Q ss_pred             CCEEEEEcCCCchhHhhc----cCCeEEEEeCCC----------------CCceEEEecCCCC-CCC--CCceeeEeecc
Q psy10644        119 RLVIADLGCGEAKLAAEL----TQHKVHSLDLVA----------------LNERVTSCDMTRT-PLK--PYSVDVAVFCL  175 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l----~~~~v~giDls~----------------~~~~~~~~d~~~l-p~~--~~sfD~Vi~~~  175 (196)
                      +.+|||||||+|.++..+    ++.+|+++|+++                .++.++.+|+... +..  ++.||+|++..
T Consensus        55 ~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  134 (233)
T 2gpy_A           55 PARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFIDA  134 (233)
T ss_dssp             CSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEEEG
T ss_pred             CCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEECC
Confidence            679999999999988777    367999999998                2478888888663 432  57899999876


Q ss_pred             cccccCHHHHHHHHHHhccCC
Q psy10644        176 SLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       176 ~lh~~d~~~~l~e~~rvLkpg  196 (196)
                      ..+  +...+++++.++||||
T Consensus       135 ~~~--~~~~~l~~~~~~L~pg  153 (233)
T 2gpy_A          135 AKG--QYRRFFDMYSPMVRPG  153 (233)
T ss_dssp             GGS--CHHHHHHHHGGGEEEE
T ss_pred             CHH--HHHHHHHHHHHHcCCC
Confidence            643  7789999999999986

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.12  E-value=1.4e-10  Score=92.81  Aligned_cols=78  Identities=17%  Similarity=0.126  Sum_probs=64.9

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc--c---CCeEEEEeCCC----------------CCceEEEecCCCCCCCCCceeeEee
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL--T---QHKVHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAVF  173 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l--~---~~~v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~  173 (196)
                      ...++.+|||+|||+|.++..+  .   +.+|+++|+++                .++.+..+|+.+.++++++||+|++
T Consensus        93 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~~~D~v~~  172 (258)
T 2pwy_A           93 DLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEEAAYDGVAL  172 (258)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCTTCEEEEEE
T ss_pred             CCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCCCCcCEEEE
Confidence            3445789999999999998777  2   57999999987                2578889999888888889999997


Q ss_pred             cccccccCHHHHHHHHHHhccCC
Q psy10644        174 CLSLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       174 ~~~lh~~d~~~~l~e~~rvLkpg  196 (196)
                          +..++..+++++.++||||
T Consensus       173 ----~~~~~~~~l~~~~~~L~~g  191 (258)
T 2pwy_A          173 ----DLMEPWKVLEKAALALKPD  191 (258)
T ss_dssp             ----ESSCGGGGHHHHHHHEEEE
T ss_pred             ----CCcCHHHHHHHHHHhCCCC
Confidence                3447778999999999986

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.11  E-value=8.5e-11  Score=94.22  Aligned_cols=72  Identities=17%  Similarity=0.158  Sum_probs=47.6

Q ss_pred             CCCEEEEEcCCCchhHhhc--cC-CeEEEEeCCCCCce--------EEE---ecC-----CCCC---CCCCceeeEeecc
Q psy10644        118 GRLVIADLGCGEAKLAAEL--TQ-HKVHSLDLVALNER--------VTS---CDM-----TRTP---LKPYSVDVAVFCL  175 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l--~~-~~v~giDls~~~~~--------~~~---~d~-----~~lp---~~~~sfD~Vi~~~  175 (196)
                      .+.+|||||||+|.++..+  .+ .+|+|+|+|+..+.        +..   .++     ..++   +...+||++++..
T Consensus        37 ~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~D~v~~~l  116 (232)
T 3opn_A           37 NGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGRPSFTSIDVSFISL  116 (232)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCCCSEEEECCSSSCG
T ss_pred             CCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcCCCCEEEEEEEhhhH
Confidence            3569999999999999888  34 49999999993221        111   111     1111   2223455544332


Q ss_pred             cccccCHHHHHHHHHHhccCC
Q psy10644        176 SLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       176 ~lh~~d~~~~l~e~~rvLkpg  196 (196)
                             ..+|.+++|+||||
T Consensus       117 -------~~~l~~i~rvLkpg  130 (232)
T 3opn_A          117 -------DLILPPLYEILEKN  130 (232)
T ss_dssp             -------GGTHHHHHHHSCTT
T ss_pred             -------HHHHHHHHHhccCC
Confidence                   78999999999997

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.11  E-value=1.4e-10  Score=100.92  Aligned_cols=85  Identities=16%  Similarity=0.118  Sum_probs=63.9

Q ss_pred             HhhcCCCCCEEEEEcCCCchhHhhc---cC-CeEEEEeCCC------------------------CCceEEEecCCCC--
Q psy10644        112 QERESKGRLVIADLGCGEAKLAAEL---TQ-HKVHSLDLVA------------------------LNERVTSCDMTRT--  161 (196)
Q Consensus       112 ~~~~~~~~~~ILDlGCG~G~~a~~l---~~-~~v~giDls~------------------------~~~~~~~~d~~~l--  161 (196)
                      ......++.+|||||||+|.++..+   .+ .+|+|+|+++                        .++.++.+|....  
T Consensus       236 ~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~  315 (433)
T 1u2z_A          236 QQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNN  315 (433)
T ss_dssp             HHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCH
T ss_pred             HhcCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCcccccc
Confidence            3334456789999999999998877   23 4799999987                        1456666654321  


Q ss_pred             CC--CCCceeeEeecccccccCHHHHHHHHHHhccCC
Q psy10644        162 PL--KPYSVDVAVFCLSLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       162 p~--~~~sfD~Vi~~~~lh~~d~~~~l~e~~rvLkpg  196 (196)
                      ++  ..+.||+|++..+++..++..+|+++.++||||
T Consensus       316 ~~~~~~~~FDvIvvn~~l~~~d~~~~L~el~r~LKpG  352 (433)
T 1u2z_A          316 RVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVG  352 (433)
T ss_dssp             HHHHHGGGCSEEEECCTTCCHHHHHHHHHHHTTCCTT
T ss_pred             ccccccCCCCEEEEeCccccccHHHHHHHHHHhCCCC
Confidence            22  247899999877776678889999999999997

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.10  E-value=9.4e-11  Score=94.33  Aligned_cols=88  Identities=10%  Similarity=0.022  Sum_probs=65.8

Q ss_pred             HHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC----------------CCceEEEecCCCC-C
Q psy10644        105 DIIIKSIQERESKGRLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA----------------LNERVTSCDMTRT-P  162 (196)
Q Consensus       105 ~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~----------------~~~~~~~~d~~~l-p  162 (196)
                      ..++..+.....  ..+|||||||+|..+..+     .+.+|+++|+++                .++.++.+|+.++ +
T Consensus        49 ~~~l~~l~~~~~--~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~  126 (242)
T 3r3h_A           49 AQFMQMLIRLTR--AKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLH  126 (242)
T ss_dssp             HHHHHHHHHHHT--CSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHH
T ss_pred             HHHHHHHHhhcC--cCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHH
Confidence            344444443333  679999999999988777     256999999998                2678888888553 2


Q ss_pred             CC-----CCceeeEeecccccccCHHHHHHHHHHhccCC
Q psy10644        163 LK-----PYSVDVAVFCLSLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       163 ~~-----~~sfD~Vi~~~~lh~~d~~~~l~e~~rvLkpg  196 (196)
                      ..     +++||+|++...  ..+...+++++.++||||
T Consensus       127 ~~~~~~~~~~fD~V~~d~~--~~~~~~~l~~~~~~LkpG  163 (242)
T 3r3h_A          127 SLLNEGGEHQFDFIFIDAD--KTNYLNYYELALKLVTPK  163 (242)
T ss_dssp             HHHHHHCSSCEEEEEEESC--GGGHHHHHHHHHHHEEEE
T ss_pred             HHhhccCCCCEeEEEEcCC--hHHhHHHHHHHHHhcCCC
Confidence            21     478999987654  336788999999999997

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.10  E-value=2.3e-10  Score=90.29  Aligned_cols=79  Identities=20%  Similarity=0.151  Sum_probs=61.0

Q ss_pred             CCCCCEEEEEcCCCchhHhhcc-----CCeEEEEeCCC-------------CCceEEEecCCCCC---CCCCceeeEeec
Q psy10644        116 SKGRLVIADLGCGEAKLAAELT-----QHKVHSLDLVA-------------LNERVTSCDMTRTP---LKPYSVDVAVFC  174 (196)
Q Consensus       116 ~~~~~~ILDlGCG~G~~a~~l~-----~~~v~giDls~-------------~~~~~~~~d~~~lp---~~~~sfD~Vi~~  174 (196)
                      ..++.+|||+|||+|.++..+.     ..+|+|+|+++             .++.++.+|+....   ..+++||+|++.
T Consensus        71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~  150 (227)
T 1g8a_A           71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED  150 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEEC
Confidence            4457899999999999988772     36999999998             47889999987631   124689999976


Q ss_pred             ccccccCH-HHHHHHHHHhccCC
Q psy10644        175 LSLMGTDL-AACIKEANRILKLG  196 (196)
Q Consensus       175 ~~lh~~d~-~~~l~e~~rvLkpg  196 (196)
                      ..  ..+. ..++.+++++||||
T Consensus       151 ~~--~~~~~~~~l~~~~~~Lkpg  171 (227)
T 1g8a_A          151 VA--QPTQAKILIDNAEVYLKRG  171 (227)
T ss_dssp             CC--STTHHHHHHHHHHHHEEEE
T ss_pred             CC--CHhHHHHHHHHHHHhcCCC
Confidence            54  2333 34599999999996

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.10  E-value=2.4e-10  Score=89.24  Aligned_cols=87  Identities=11%  Similarity=0.024  Sum_probs=65.2

Q ss_pred             HHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc----c-CCeEEEEeCCC----------------CCceEEEecCCC-CC
Q psy10644        105 DIIIKSIQERESKGRLVIADLGCGEAKLAAEL----T-QHKVHSLDLVA----------------LNERVTSCDMTR-TP  162 (196)
Q Consensus       105 ~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l----~-~~~v~giDls~----------------~~~~~~~~d~~~-lp  162 (196)
                      ..++..+.....  ..+|||||||+|..+..+    . +.+|+++|+++                .++.++.+|+.. ++
T Consensus        45 ~~~l~~l~~~~~--~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~  122 (210)
T 3c3p_A           45 GRLLYLLARIKQ--PQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAA  122 (210)
T ss_dssp             HHHHHHHHHHHC--CSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHT
T ss_pred             HHHHHHHHHhhC--CCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhc
Confidence            344454433333  679999999999998887    2 56999999998                147788888754 35


Q ss_pred             CCCCceeeEeecccccccCHHHHHHHHHHhccCC
Q psy10644        163 LKPYSVDVAVFCLSLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       163 ~~~~sfD~Vi~~~~lh~~d~~~~l~e~~rvLkpg  196 (196)
                      ..++ ||+|++...  ..+...+++++.++||||
T Consensus       123 ~~~~-fD~v~~~~~--~~~~~~~l~~~~~~Lkpg  153 (210)
T 3c3p_A          123 GQRD-IDILFMDCD--VFNGADVLERMNRCLAKN  153 (210)
T ss_dssp             TCCS-EEEEEEETT--TSCHHHHHHHHGGGEEEE
T ss_pred             cCCC-CCEEEEcCC--hhhhHHHHHHHHHhcCCC
Confidence            4456 999987632  347889999999999986

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.10  E-value=1.5e-10  Score=93.17  Aligned_cols=89  Identities=9%  Similarity=-0.005  Sum_probs=67.0

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc----c-CCeEEEEeCCC----------------CCceEEEecCCC-C
Q psy10644        104 VDIIIKSIQERESKGRLVIADLGCGEAKLAAEL----T-QHKVHSLDLVA----------------LNERVTSCDMTR-T  161 (196)
Q Consensus       104 ~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l----~-~~~v~giDls~----------------~~~~~~~~d~~~-l  161 (196)
                      ...++..+.....  +.+|||||||+|..+..+    + +.+|+++|+++                .++.++.+|+.. +
T Consensus        51 ~~~~l~~l~~~~~--~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l  128 (248)
T 3tfw_A           51 QGQFLALLVRLTQ--AKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSL  128 (248)
T ss_dssp             HHHHHHHHHHHHT--CSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHH
T ss_pred             HHHHHHHHHhhcC--CCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHH
Confidence            3445555543333  679999999999998877    2 56999999998                268899999855 3


Q ss_pred             CCC--CCceeeEeecccccccCHHHHHHHHHHhccCC
Q psy10644        162 PLK--PYSVDVAVFCLSLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       162 p~~--~~sfD~Vi~~~~lh~~d~~~~l~e~~rvLkpg  196 (196)
                      +..  .++||+|++...  ..+...+++++.++||||
T Consensus       129 ~~~~~~~~fD~V~~d~~--~~~~~~~l~~~~~~LkpG  163 (248)
T 3tfw_A          129 ESLGECPAFDLIFIDAD--KPNNPHYLRWALRYSRPG  163 (248)
T ss_dssp             HTCCSCCCCSEEEECSC--GGGHHHHHHHHHHTCCTT
T ss_pred             HhcCCCCCeEEEEECCc--hHHHHHHHHHHHHhcCCC
Confidence            322  358999988543  336788999999999997

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.10  E-value=1.5e-10  Score=93.00  Aligned_cols=81  Identities=16%  Similarity=0.091  Sum_probs=61.1

Q ss_pred             hcCCCCCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC-------------CCceEEEecCCCCC---CCCCceeeEe
Q psy10644        114 RESKGRLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA-------------LNERVTSCDMTRTP---LKPYSVDVAV  172 (196)
Q Consensus       114 ~~~~~~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~-------------~~~~~~~~d~~~lp---~~~~sfD~Vi  172 (196)
                      ....++.+|||+|||+|.++..+     ...+|+|+|+++             .|+.++.+|+....   ...++||+|+
T Consensus        72 ~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~  151 (232)
T 3id6_C           72 NPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLY  151 (232)
T ss_dssp             CSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEE
T ss_pred             cCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEE
Confidence            34567899999999999998776     345999999998             57889999986532   1246899998


Q ss_pred             ecccccccCHHHH-HHHHHHhccCC
Q psy10644        173 FCLSLMGTDLAAC-IKEANRILKLG  196 (196)
Q Consensus       173 ~~~~lh~~d~~~~-l~e~~rvLkpg  196 (196)
                      +..+.  .+.... +..+.++||||
T Consensus       152 ~d~a~--~~~~~il~~~~~~~LkpG  174 (232)
T 3id6_C          152 VDIAQ--PDQTDIAIYNAKFFLKVN  174 (232)
T ss_dssp             ECCCC--TTHHHHHHHHHHHHEEEE
T ss_pred             ecCCC--hhHHHHHHHHHHHhCCCC
Confidence            87554  455554 45566699986

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.10  E-value=1.6e-10  Score=93.78  Aligned_cols=79  Identities=22%  Similarity=0.209  Sum_probs=62.8

Q ss_pred             CCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC-----------C--------CceEEEecCCCC-------CCCCCc
Q psy10644        118 GRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA-----------L--------NERVTSCDMTRT-------PLKPYS  167 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~-----------~--------~~~~~~~d~~~l-------p~~~~s  167 (196)
                      ++.+|||+|||+|.++..+    ++.+|+|+|+++           .        ++.++.+|+.++       ++++++
T Consensus        36 ~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~  115 (260)
T 2ozv_A           36 RACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDEH  115 (260)
T ss_dssp             SCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTTC
T ss_pred             CCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCCC
Confidence            4679999999999998877    346999999997           2        278899999876       366789


Q ss_pred             eeeEeecccc-----------------ccc--CHHHHHHHHHHhccCC
Q psy10644        168 VDVAVFCLSL-----------------MGT--DLAACIKEANRILKLG  196 (196)
Q Consensus       168 fD~Vi~~~~l-----------------h~~--d~~~~l~e~~rvLkpg  196 (196)
                      ||+|++...+                 |..  +...+++++.++||||
T Consensus       116 fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lkpg  163 (260)
T 2ozv_A          116 FHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSG  163 (260)
T ss_dssp             EEEEEECCCC---------------------CCHHHHHHHHHHHEEEE
T ss_pred             cCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCC
Confidence            9999997332                 222  5789999999999986

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.09  E-value=1.6e-10  Score=92.74  Aligned_cols=77  Identities=18%  Similarity=0.201  Sum_probs=63.4

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc--c---CCeEEEEeCCC---------------CC-ceEEEecCCCCCCCCCceeeEee
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL--T---QHKVHSLDLVA---------------LN-ERVTSCDMTRTPLKPYSVDVAVF  173 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l--~---~~~v~giDls~---------------~~-~~~~~~d~~~lp~~~~sfD~Vi~  173 (196)
                      ...++.+|||+|||+|.++..+  .   +.+|+++|+++               .+ +.++.+|+.+. +++++||+|++
T Consensus        90 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~D~v~~  168 (255)
T 3mb5_A           90 GISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEG-IEEENVDHVIL  168 (255)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGC-CCCCSEEEEEE
T ss_pred             CCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhc-cCCCCcCEEEE
Confidence            4455789999999999998877  2   67999999997               23 88999998753 67789999987


Q ss_pred             cccccccCHHHHHHHHHHhccCC
Q psy10644        174 CLSLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       174 ~~~lh~~d~~~~l~e~~rvLkpg  196 (196)
                          +..++..+++++.++||||
T Consensus       169 ----~~~~~~~~l~~~~~~L~~g  187 (255)
T 3mb5_A          169 ----DLPQPERVVEHAAKALKPG  187 (255)
T ss_dssp             ----CSSCGGGGHHHHHHHEEEE
T ss_pred             ----CCCCHHHHHHHHHHHcCCC
Confidence                3347788999999999986

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.09  E-value=5.9e-11  Score=100.09  Aligned_cols=77  Identities=18%  Similarity=0.257  Sum_probs=62.7

Q ss_pred             CCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC--------------CCceEEEecCCCCCCCCCceeeEeecccccc
Q psy10644        118 GRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA--------------LNERVTSCDMTRTPLKPYSVDVAVFCLSLMG  179 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~--------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~  179 (196)
                      .+.+|||||||+|.++..+    +..+|+++|+++              ....++.+|+...  .+++||+|++...+|.
T Consensus       196 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~--~~~~fD~Iv~~~~~~~  273 (343)
T 2pjd_A          196 TKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSE--VKGRFDMIISNPPFHD  273 (343)
T ss_dssp             CCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTT--CCSCEEEEEECCCCCS
T ss_pred             CCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEcccccc--ccCCeeEEEECCCccc
Confidence            3668999999999998887    335999999998              2356777787654  3679999999998863


Q ss_pred             -----c-CHHHHHHHHHHhccCC
Q psy10644        180 -----T-DLAACIKEANRILKLG  196 (196)
Q Consensus       180 -----~-d~~~~l~e~~rvLkpg  196 (196)
                           . +...++++++|+||||
T Consensus       274 g~~~~~~~~~~~l~~~~~~Lkpg  296 (343)
T 2pjd_A          274 GMQTSLDAAQTLIRGAVRHLNSG  296 (343)
T ss_dssp             SSHHHHHHHHHHHHHHGGGEEEE
T ss_pred             CccCCHHHHHHHHHHHHHhCCCC
Confidence                 2 5788999999999986

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.09  E-value=3e-11  Score=90.68  Aligned_cols=77  Identities=21%  Similarity=0.174  Sum_probs=60.8

Q ss_pred             CCEEEEEcCCCchhHhhc--cCCeEEEEeCCC--------------CCceEEEecCCCC-C-C--CCCceeeEeeccccc
Q psy10644        119 RLVIADLGCGEAKLAAEL--TQHKVHSLDLVA--------------LNERVTSCDMTRT-P-L--KPYSVDVAVFCLSLM  178 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l--~~~~v~giDls~--------------~~~~~~~~d~~~l-p-~--~~~sfD~Vi~~~~lh  178 (196)
                      +.+|||+|||+|.++..+  .+..|+|+|+++              .++.++.+|+.+. + +  ..++||+|++...+|
T Consensus        42 ~~~vLD~GcG~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~~~  121 (171)
T 1ws6_A           42 RGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPPYA  121 (171)
T ss_dssp             CCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCCTT
T ss_pred             CCeEEEeCCCcCHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECCCCc
Confidence            679999999999998888  455799999998              1678888887652 2 1  134899999998877


Q ss_pred             ccCHHHHHHHHH--HhccCC
Q psy10644        179 GTDLAACIKEAN--RILKLG  196 (196)
Q Consensus       179 ~~d~~~~l~e~~--rvLkpg  196 (196)
                       .+...+++.+.  ++||||
T Consensus       122 -~~~~~~~~~~~~~~~L~~g  140 (171)
T 1ws6_A          122 -MDLAALFGELLASGLVEAG  140 (171)
T ss_dssp             -SCTTHHHHHHHHHTCEEEE
T ss_pred             -hhHHHHHHHHHhhcccCCC
Confidence             66667777777  999986

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.09  E-value=2.6e-10  Score=89.06  Aligned_cols=77  Identities=21%  Similarity=0.026  Sum_probs=60.0

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc---cC--CeEEEEeCCC---------------CCceEEEecCCCCCCCCCceeeEeec
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL---TQ--HKVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDVAVFC  174 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l---~~--~~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~  174 (196)
                      ...++.+|||||||+|.++..+   .+  .+|+++|+++               .++.+..+|+......+++||+|++.
T Consensus        74 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~  153 (215)
T 2yxe_A           74 DLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLAPYDRIYTT  153 (215)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGCCEEEEEES
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCCCeeEEEEC
Confidence            3445789999999999998877   22  7999999997               35788888875422236789999999


Q ss_pred             ccccccCHHHHHHHHHHhccCC
Q psy10644        175 LSLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       175 ~~lh~~d~~~~l~e~~rvLkpg  196 (196)
                      .++|+..     .++.++||||
T Consensus       154 ~~~~~~~-----~~~~~~L~pg  170 (215)
T 2yxe_A          154 AAGPKIP-----EPLIRQLKDG  170 (215)
T ss_dssp             SBBSSCC-----HHHHHTEEEE
T ss_pred             CchHHHH-----HHHHHHcCCC
Confidence            9996543     4889999986

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.09  E-value=1.5e-10  Score=96.47  Aligned_cols=77  Identities=17%  Similarity=0.050  Sum_probs=62.1

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc----c-CCeEEEEeCCC---------------CCceEEEecCCCCCCCCCceeeEeec
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL----T-QHKVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDVAVFC  174 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l----~-~~~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~  174 (196)
                      ...++.+|||||||+|.++..+    . ..+|+|+|+++               .++.+..+|+...+.++++||+|++.
T Consensus        72 ~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Iv~~  151 (317)
T 1dl5_A           72 GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVIFVT  151 (317)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEEC
T ss_pred             CCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCCCeEEEEEc
Confidence            4445789999999999998877    2 34699999998               35888999987755556889999999


Q ss_pred             ccccccCHHHHHHHHHHhccCC
Q psy10644        175 LSLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       175 ~~lh~~d~~~~l~e~~rvLkpg  196 (196)
                      .++++..     .++.++||||
T Consensus       152 ~~~~~~~-----~~~~~~Lkpg  168 (317)
T 1dl5_A          152 VGVDEVP-----ETWFTQLKEG  168 (317)
T ss_dssp             SBBSCCC-----HHHHHHEEEE
T ss_pred             CCHHHHH-----HHHHHhcCCC
Confidence            9996543     5788899986

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.08  E-value=4.4e-10  Score=87.00  Aligned_cols=74  Identities=18%  Similarity=0.127  Sum_probs=58.5

Q ss_pred             CCCCEEEEEcCCCchhHhhc--cCC-eEEEEeCCC----------CCceEEEecCCCCCCCCCceeeEeeccccccc---
Q psy10644        117 KGRLVIADLGCGEAKLAAEL--TQH-KVHSLDLVA----------LNERVTSCDMTRTPLKPYSVDVAVFCLSLMGT---  180 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l--~~~-~v~giDls~----------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~~---  180 (196)
                      .++.+|||+|||+|.++..+  .+. +|+|+|+++          .++.++.+|+..++   ++||+|++...+|+.   
T Consensus        50 ~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p~~~~~~~  126 (200)
T 1ne2_A           50 IGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFMVADVSEIS---GKYDTWIMNPPFGSVVKH  126 (200)
T ss_dssp             SBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCC---CCEEEEEECCCC------
T ss_pred             CCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcCCCEEEECcHHHCC---CCeeEEEECCCchhccCc
Confidence            34789999999999998888  333 799999998          26899999998865   689999999988644   


Q ss_pred             CHHHHHHHHHHhc
Q psy10644        181 DLAACIKEANRIL  193 (196)
Q Consensus       181 d~~~~l~e~~rvL  193 (196)
                      ....+++++.++|
T Consensus       127 ~~~~~l~~~~~~~  139 (200)
T 1ne2_A          127 SDRAFIDKAFETS  139 (200)
T ss_dssp             -CHHHHHHHHHHE
T ss_pred             hhHHHHHHHHHhc
Confidence            2357888888876

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.08  E-value=1.7e-10  Score=92.57  Aligned_cols=79  Identities=22%  Similarity=0.376  Sum_probs=61.1

Q ss_pred             CCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC-----------------------CCceEEEecCCC-CC--CCCCc
Q psy10644        118 GRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA-----------------------LNERVTSCDMTR-TP--LKPYS  167 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~-----------------------~~~~~~~~d~~~-lp--~~~~s  167 (196)
                      ++.+|||||||+|.++..+    +...|+|+|+|+                       .++.++.+|+.. ++  ++.++
T Consensus        49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~  128 (246)
T 2vdv_E           49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQ  128 (246)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTC
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccccc
Confidence            4679999999999998887    345899999985                       257889999876 66  77889


Q ss_pred             eeeEeeccccccc-C--------HHHHHHHHHHhccCC
Q psy10644        168 VDVAVFCLSLMGT-D--------LAACIKEANRILKLG  196 (196)
Q Consensus       168 fD~Vi~~~~lh~~-d--------~~~~l~e~~rvLkpg  196 (196)
                      +|.|++.+.--+. .        ...++.++.++||||
T Consensus       129 ~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~Lkpg  166 (246)
T 2vdv_E          129 LSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEG  166 (246)
T ss_dssp             EEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEE
T ss_pred             cCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCC
Confidence            9999855422110 0        158999999999986

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.08  E-value=1.7e-10  Score=93.41  Aligned_cols=87  Identities=21%  Similarity=0.169  Sum_probs=65.1

Q ss_pred             HHHHHHHhhcCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCCC------------C--ceEEEecCCCCCCCCCcee
Q psy10644        106 IIIKSIQERESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVAL------------N--ERVTSCDMTRTPLKPYSVD  169 (196)
Q Consensus       106 ~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~~------------~--~~~~~~d~~~lp~~~~sfD  169 (196)
                      ..++.+... ..++.+|||+|||+|.++..+  .+.+|+|+|+++.            +  +.+..+|+.. ++++++||
T Consensus       109 ~~~~~l~~~-~~~~~~VLDiGcG~G~l~~~la~~g~~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~-~~~~~~fD  186 (254)
T 2nxc_A          109 LALKALARH-LRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEA-ALPFGPFD  186 (254)
T ss_dssp             HHHHHHHHH-CCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHH-HGGGCCEE
T ss_pred             HHHHHHHHh-cCCCCEEEEecCCCcHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhh-cCcCCCCC
Confidence            344445433 234789999999999998877  4559999999981            2  6777777755 24567899


Q ss_pred             eEeecccccccCHHHHHHHHHHhccCC
Q psy10644        170 VAVFCLSLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       170 ~Vi~~~~lh~~d~~~~l~e~~rvLkpg  196 (196)
                      +|+++...+.  ...++.++.++||||
T Consensus       187 ~Vv~n~~~~~--~~~~l~~~~~~Lkpg  211 (254)
T 2nxc_A          187 LLVANLYAEL--HAALAPRYREALVPG  211 (254)
T ss_dssp             EEEEECCHHH--HHHHHHHHHHHEEEE
T ss_pred             EEEECCcHHH--HHHHHHHHHHHcCCC
Confidence            9998765543  578999999999986

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.08  E-value=1.6e-10  Score=93.91  Aligned_cols=78  Identities=24%  Similarity=0.224  Sum_probs=64.3

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC------------------CCceEEEecCCCCCCCCCceeeE
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA------------------LNERVTSCDMTRTPLKPYSVDVA  171 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~------------------~~~~~~~~d~~~lp~~~~sfD~V  171 (196)
                      ...++.+|||+|||+|.++..+     ++.+|+++|+++                  .++.++.+|+...++++++||+|
T Consensus        96 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~~~~~~D~v  175 (280)
T 1i9g_A           96 DIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRA  175 (280)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEEEE
T ss_pred             CCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCCCCCceeEE
Confidence            3445789999999999998777     256999999986                  14788889998888888899999


Q ss_pred             eecccccccCHHHHHHHHHHhccCC
Q psy10644        172 VFCLSLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       172 i~~~~lh~~d~~~~l~e~~rvLkpg  196 (196)
                      ++    +..++..++.++.++||||
T Consensus       176 ~~----~~~~~~~~l~~~~~~L~pg  196 (280)
T 1i9g_A          176 VL----DMLAPWEVLDAVSRLLVAG  196 (280)
T ss_dssp             EE----ESSCGGGGHHHHHHHEEEE
T ss_pred             EE----CCcCHHHHHHHHHHhCCCC
Confidence            98    3346778999999999986

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.08  E-value=1.1e-10  Score=95.25  Aligned_cols=77  Identities=13%  Similarity=0.216  Sum_probs=63.6

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc--c---CCeEEEEeCCC------------C----CceEEEecCCCCCCCCCceeeEee
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL--T---QHKVHSLDLVA------------L----NERVTSCDMTRTPLKPYSVDVAVF  173 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l--~---~~~v~giDls~------------~----~~~~~~~d~~~lp~~~~sfD~Vi~  173 (196)
                      ...++.+|||+|||+|.++..+  .   +.+|+++|+++            .    ++.+..+|+.. ++++++||+|++
T Consensus       107 ~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~-~~~~~~fD~Vi~  185 (275)
T 1yb2_A          107 GLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIAD-FISDQMYDAVIA  185 (275)
T ss_dssp             CCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTT-CCCSCCEEEEEE
T ss_pred             CCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhc-cCcCCCccEEEE
Confidence            3445789999999999998777  2   57999999987            1    47888889877 677789999997


Q ss_pred             cccccccCHHHHHHHHHHhccCC
Q psy10644        174 CLSLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       174 ~~~lh~~d~~~~l~e~~rvLkpg  196 (196)
                          |..++..+++++.++||||
T Consensus       186 ----~~~~~~~~l~~~~~~Lkpg  204 (275)
T 1yb2_A          186 ----DIPDPWNHVQKIASMMKPG  204 (275)
T ss_dssp             ----CCSCGGGSHHHHHHTEEEE
T ss_pred             ----cCcCHHHHHHHHHHHcCCC
Confidence                4457789999999999986

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.06  E-value=1.8e-10  Score=95.75  Aligned_cols=79  Identities=18%  Similarity=0.102  Sum_probs=60.7

Q ss_pred             CCCEEEEEcCCCchhHhhcc----CCeEEEEeCCC-------------------CCceEEEecCCCCCC--CCCceeeEe
Q psy10644        118 GRLVIADLGCGEAKLAAELT----QHKVHSLDLVA-------------------LNERVTSCDMTRTPL--KPYSVDVAV  172 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l~----~~~v~giDls~-------------------~~~~~~~~d~~~lp~--~~~sfD~Vi  172 (196)
                      ++.+|||||||+|.++..+.    ..+|+++|+++                   .++.++.+|+..++.  ++++||+|+
T Consensus        95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvIi  174 (304)
T 3bwc_A           95 KPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVVI  174 (304)
T ss_dssp             SCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEEE
T ss_pred             CCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEEE
Confidence            36799999999999998882    35999999997                   257888888866543  478999999


Q ss_pred             ecccccc-cCH----HHHHHHHHHhccCC
Q psy10644        173 FCLSLMG-TDL----AACIKEANRILKLG  196 (196)
Q Consensus       173 ~~~~lh~-~d~----~~~l~e~~rvLkpg  196 (196)
                      +....+. ...    ..++++++|+||||
T Consensus       175 ~d~~~~~~~~~~l~~~~~l~~~~~~Lkpg  203 (304)
T 3bwc_A          175 IDTTDPAGPASKLFGEAFYKDVLRILKPD  203 (304)
T ss_dssp             EECC---------CCHHHHHHHHHHEEEE
T ss_pred             ECCCCccccchhhhHHHHHHHHHHhcCCC
Confidence            9766643 222    68999999999986

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.06  E-value=5.7e-10  Score=87.72  Aligned_cols=89  Identities=11%  Similarity=0.047  Sum_probs=65.7

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc----c-CCeEEEEeCCC----------------CCceEEEecCCCC-
Q psy10644        104 VDIIIKSIQERESKGRLVIADLGCGEAKLAAEL----T-QHKVHSLDLVA----------------LNERVTSCDMTRT-  161 (196)
Q Consensus       104 ~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l----~-~~~v~giDls~----------------~~~~~~~~d~~~l-  161 (196)
                      ...++..+.....  +.+|||||||+|.++..+    + +.+|+++|+++                .++.++.+|+... 
T Consensus        46 ~~~~l~~l~~~~~--~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~  123 (223)
T 3duw_A           46 QGKFLQLLVQIQG--ARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSL  123 (223)
T ss_dssp             HHHHHHHHHHHHT--CSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHH
T ss_pred             HHHHHHHHHHhhC--CCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHH
Confidence            3445555543333  679999999999998877    2 57999999998                2488889887542 


Q ss_pred             C-CC---CCceeeEeecccccccCHHHHHHHHHHhccCC
Q psy10644        162 P-LK---PYSVDVAVFCLSLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       162 p-~~---~~sfD~Vi~~~~lh~~d~~~~l~e~~rvLkpg  196 (196)
                      + ++   .++||+|++...  ..+...+++++.++||||
T Consensus       124 ~~~~~~~~~~fD~v~~d~~--~~~~~~~l~~~~~~L~pg  160 (223)
T 3duw_A          124 QQIENEKYEPFDFIFIDAD--KQNNPAYFEWALKLSRPG  160 (223)
T ss_dssp             HHHHHTTCCCCSEEEECSC--GGGHHHHHHHHHHTCCTT
T ss_pred             HHHHhcCCCCcCEEEEcCC--cHHHHHHHHHHHHhcCCC
Confidence            2 11   267999987655  236688999999999997

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.06  E-value=2.4e-10  Score=91.77  Aligned_cols=79  Identities=20%  Similarity=0.207  Sum_probs=60.9

Q ss_pred             CCCEEEEEcCCCchhHhhc--c----CCeEEEEeCCC-----------CC------------------------------
Q psy10644        118 GRLVIADLGCGEAKLAAEL--T----QHKVHSLDLVA-----------LN------------------------------  150 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l--~----~~~v~giDls~-----------~~------------------------------  150 (196)
                      ++.+|||+|||+|.++..+  .    +.+|+|+|+++           ..                              
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA  130 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence            4679999999999987776  2    45899999998           12                              


Q ss_pred             ---ce-------------EEEecCCCCCC-----CCCceeeEeeccccccc----------CHHHHHHHHHHhccCC
Q psy10644        151 ---ER-------------VTSCDMTRTPL-----KPYSVDVAVFCLSLMGT----------DLAACIKEANRILKLG  196 (196)
Q Consensus       151 ---~~-------------~~~~d~~~lp~-----~~~sfD~Vi~~~~lh~~----------d~~~~l~e~~rvLkpg  196 (196)
                         +.             +.++|+.....     ..+.||+|++...++..          ....++++++++||||
T Consensus       131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg  207 (250)
T 1o9g_A          131 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAH  207 (250)
T ss_dssp             HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTT
T ss_pred             hhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCC
Confidence               45             88899866321     44589999998766422          3468999999999997

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.05  E-value=5.1e-10  Score=92.20  Aligned_cols=64  Identities=22%  Similarity=0.236  Sum_probs=52.7

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC----------------CCceEEEecCCCCCCCCCceeeEeeccc
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAVFCLS  176 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~  176 (196)
                      ...++.+|||||||+|.++..+  .+.+|+|+|+++                .++.++.+|+..++++  .||+|+++..
T Consensus        25 ~~~~~~~VLDiG~G~G~lt~~L~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~--~fD~vv~nlp  102 (285)
T 1zq9_A           25 ALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP--FFDTCVANLP  102 (285)
T ss_dssp             CCCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC--CCSEEEEECC
T ss_pred             CCCCCCEEEEEcCcccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccch--hhcEEEEecC
Confidence            3445789999999999999988  567999999998                1578899999887765  7999999877


Q ss_pred             cccc
Q psy10644        177 LMGT  180 (196)
Q Consensus       177 lh~~  180 (196)
                      +++.
T Consensus       103 y~~~  106 (285)
T 1zq9_A          103 YQIS  106 (285)
T ss_dssp             GGGH
T ss_pred             cccc
Confidence            6544

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.05  E-value=1.1e-10  Score=93.84  Aligned_cols=79  Identities=13%  Similarity=0.059  Sum_probs=55.4

Q ss_pred             CCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC----------------CCceEEEecCCCC---CCC---CCceeeE
Q psy10644        118 GRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA----------------LNERVTSCDMTRT---PLK---PYSVDVA  171 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~----------------~~~~~~~~d~~~l---p~~---~~sfD~V  171 (196)
                      ++.+|||+|||+|.++..+    .+.+|+|+|+++                .++.++.+|+.+.   +++   +++||+|
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i  144 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC  144 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence            3679999999999887766    367999999998                1388999997652   454   2689999


Q ss_pred             eecccccccC----------------HHHHHHHHHHhccCC
Q psy10644        172 VFCLSLMGTD----------------LAACIKEANRILKLG  196 (196)
Q Consensus       172 i~~~~lh~~d----------------~~~~l~e~~rvLkpg  196 (196)
                      ++...+|...                ...++.+++|+||||
T Consensus       145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Lkpg  185 (254)
T 2h00_A          145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEG  185 (254)
T ss_dssp             EECCCCC-------------------------CTTTTHHHH
T ss_pred             EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecC
Confidence            9986554221                124577888888885

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.05  E-value=6.5e-10  Score=91.17  Aligned_cols=90  Identities=12%  Similarity=0.146  Sum_probs=63.4

Q ss_pred             HHHHHHHHhhc-CCCCCEEEEEcCCCchhHhhc--cCC-eEEEEeC-CC---------C----------------CceEE
Q psy10644        105 DIIIKSIQERE-SKGRLVIADLGCGEAKLAAEL--TQH-KVHSLDL-VA---------L----------------NERVT  154 (196)
Q Consensus       105 ~~~~~~l~~~~-~~~~~~ILDlGCG~G~~a~~l--~~~-~v~giDl-s~---------~----------------~~~~~  154 (196)
                      ..+.+++.... ..++.+|||||||+|.++..+  .+. +|+++|+ ++         .                ++.+.
T Consensus        65 ~~l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~  144 (281)
T 3bzb_A           65 RALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVV  144 (281)
T ss_dssp             HHHHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEE
T ss_pred             HHHHHHHHhcchhcCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEE
Confidence            33444444322 234679999999999998877  344 8999999 66         1                23444


Q ss_pred             EecCCCC--CC----CCCceeeEeeccccc-ccCHHHHHHHHHHhcc
Q psy10644        155 SCDMTRT--PL----KPYSVDVAVFCLSLM-GTDLAACIKEANRILK  194 (196)
Q Consensus       155 ~~d~~~l--p~----~~~sfD~Vi~~~~lh-~~d~~~~l~e~~rvLk  194 (196)
                      ..+..+.  .+    ++++||+|+++.+++ ..+...+++++.++||
T Consensus       145 ~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk  191 (281)
T 3bzb_A          145 PYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLA  191 (281)
T ss_dssp             ECCTTSCTHHHHHHHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBC
T ss_pred             EecCCCccHHHHhhccCCCCCEEEEeCcccChHHHHHHHHHHHHHhc
Confidence            4443321  11    357899999999995 4489999999999999

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.04  E-value=2.2e-10  Score=90.99  Aligned_cols=91  Identities=13%  Similarity=0.116  Sum_probs=66.5

Q ss_pred             HHHHHHHHHhhcC-CCCCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC---------------C--CceEEEecCCC
Q psy10644        104 VDIIIKSIQERES-KGRLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA---------------L--NERVTSCDMTR  160 (196)
Q Consensus       104 ~~~~~~~l~~~~~-~~~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~---------------~--~~~~~~~d~~~  160 (196)
                      ...++..+..... .++.+|||||||+|..+..+     .+.+|+++|+++               .  ++.++.+|+.+
T Consensus        41 ~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~  120 (221)
T 3dr5_A           41 TGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLD  120 (221)
T ss_dssp             HHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHH
T ss_pred             HHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHH
Confidence            3445555544332 23459999999999988777     257999999998               1  47788888755


Q ss_pred             C-C-CCCCceeeEeecccccccCHHHHHHHHHHhccCC
Q psy10644        161 T-P-LKPYSVDVAVFCLSLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       161 l-p-~~~~sfD~Vi~~~~lh~~d~~~~l~e~~rvLkpg  196 (196)
                      + + +++++||+|++...  ..+...+++++.++||||
T Consensus       121 ~l~~~~~~~fD~V~~d~~--~~~~~~~l~~~~~~LkpG  156 (221)
T 3dr5_A          121 VMSRLANDSYQLVFGQVS--PMDLKALVDAAWPLLRRG  156 (221)
T ss_dssp             HGGGSCTTCEEEEEECCC--TTTHHHHHHHHHHHEEEE
T ss_pred             HHHHhcCCCcCeEEEcCc--HHHHHHHHHHHHHHcCCC
Confidence            3 2 44689999987643  236778999999999996

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.04  E-value=3.3e-10  Score=99.84  Aligned_cols=79  Identities=18%  Similarity=0.163  Sum_probs=64.6

Q ss_pred             CCCCEEEEEcCCCchhHhhc--c-CCeEEEEeCCC---------------CCceEEEecCCCCCCCCCceeeEeecccc-
Q psy10644        117 KGRLVIADLGCGEAKLAAEL--T-QHKVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDVAVFCLSL-  177 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l--~-~~~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l-  177 (196)
                      .++.+|||||||+|.++..+  . ..+|+|+|+++               .++.++.+|+.+++++ ++||+|++...+ 
T Consensus       157 ~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~-~~fD~Ivs~~~~~  235 (480)
T 3b3j_A          157 FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPMGY  235 (480)
T ss_dssp             TTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCCHH
T ss_pred             cCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhCccC-CCeEEEEEeCchH
Confidence            34679999999999998877  2 35999999987               3588999999888765 589999998776 


Q ss_pred             ccc--CHHHHHHHHHHhccCC
Q psy10644        178 MGT--DLAACIKEANRILKLG  196 (196)
Q Consensus       178 h~~--d~~~~l~e~~rvLkpg  196 (196)
                      |..  +....+.+++++||||
T Consensus       236 ~~~~e~~~~~l~~~~~~Lkpg  256 (480)
T 3b3j_A          236 MLFNERMLESYLHAKKYLKPS  256 (480)
T ss_dssp             HHTCHHHHHHHHHGGGGEEEE
T ss_pred             hcCcHHHHHHHHHHHHhcCCC
Confidence            433  5677888999999986

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.04  E-value=2.9e-10  Score=93.24  Aligned_cols=75  Identities=17%  Similarity=0.098  Sum_probs=61.6

Q ss_pred             CCCEEEEEcCCCchhHhhc--cCC-eEEEEeCCC----------------CCceEEEecCCCCCCCCCceeeEeeccccc
Q psy10644        118 GRLVIADLGCGEAKLAAEL--TQH-KVHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAVFCLSLM  178 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l--~~~-~v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh  178 (196)
                      ++.+|||+|||+|.++..+  .+. +|+|+|+++                .++.++.+|+..++. +++||+|++...  
T Consensus       125 ~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~-~~~fD~Vi~~~p--  201 (278)
T 2frn_A          125 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYV--  201 (278)
T ss_dssp             TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCC--
T ss_pred             CCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc-cCCccEEEECCc--
Confidence            4789999999999998888  344 699999998                137799999988766 789999988543  


Q ss_pred             ccCHHHHHHHHHHhccCC
Q psy10644        179 GTDLAACIKEANRILKLG  196 (196)
Q Consensus       179 ~~d~~~~l~e~~rvLkpg  196 (196)
                       .+...++.++.++||||
T Consensus       202 -~~~~~~l~~~~~~Lkpg  218 (278)
T 2frn_A          202 -VRTHEFIPKALSIAKDG  218 (278)
T ss_dssp             -SSGGGGHHHHHHHEEEE
T ss_pred             -hhHHHHHHHHHHHCCCC
Confidence             24477899999999986

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.03  E-value=2.1e-10  Score=90.29  Aligned_cols=88  Identities=11%  Similarity=0.098  Sum_probs=65.1

Q ss_pred             HHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc----c-CCeEEEEeCCC----------------CCceEEEecCCCC-C
Q psy10644        105 DIIIKSIQERESKGRLVIADLGCGEAKLAAEL----T-QHKVHSLDLVA----------------LNERVTSCDMTRT-P  162 (196)
Q Consensus       105 ~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l----~-~~~v~giDls~----------------~~~~~~~~d~~~l-p  162 (196)
                      ..++..+....+  +.+|||||||+|.++..+    + +.+|+++|+++                .++.++.+|+... +
T Consensus        53 ~~~l~~l~~~~~--~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~  130 (225)
T 3tr6_A           53 AQLLALLVKLMQ--AKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLA  130 (225)
T ss_dssp             HHHHHHHHHHHT--CSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHH
T ss_pred             HHHHHHHHHhhC--CCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHH
Confidence            445555544433  679999999999998887    2 57999999998                2488899887442 2


Q ss_pred             -CCC----CceeeEeecccccccCHHHHHHHHHHhccCC
Q psy10644        163 -LKP----YSVDVAVFCLSLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       163 -~~~----~sfD~Vi~~~~lh~~d~~~~l~e~~rvLkpg  196 (196)
                       +..    ++||+|++...  ..+...+++++.++||||
T Consensus       131 ~~~~~~~~~~fD~v~~~~~--~~~~~~~l~~~~~~L~pg  167 (225)
T 3tr6_A          131 ELIHAGQAWQYDLIYIDAD--KANTDLYYEESLKLLREG  167 (225)
T ss_dssp             HHHTTTCTTCEEEEEECSC--GGGHHHHHHHHHHHEEEE
T ss_pred             HhhhccCCCCccEEEECCC--HHHHHHHHHHHHHhcCCC
Confidence             111    78999985443  336788999999999986

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.00  E-value=5.8e-10  Score=93.48  Aligned_cols=78  Identities=15%  Similarity=0.177  Sum_probs=57.8

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc--c-C--CeEEEEeCCC--------------------------CCceEEEecCCCC--
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL--T-Q--HKVHSLDLVA--------------------------LNERVTSCDMTRT--  161 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l--~-~--~~v~giDls~--------------------------~~~~~~~~d~~~l--  161 (196)
                      ...++.+|||+|||+|.++..+  . +  .+|+++|+++                          .++.+..+|+...  
T Consensus       102 ~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~  181 (336)
T 2b25_A          102 DINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATE  181 (336)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC-
T ss_pred             CCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHccc
Confidence            3445789999999999998877  1 3  7999999987                          2578899999776  


Q ss_pred             CCCCCceeeEeecccccccCHHHHHHHHHHhccCC
Q psy10644        162 PLKPYSVDVAVFCLSLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       162 p~~~~sfD~Vi~~~~lh~~d~~~~l~e~~rvLkpg  196 (196)
                      ++++++||+|++...    ++..++.++.++||||
T Consensus       182 ~~~~~~fD~V~~~~~----~~~~~l~~~~~~Lkpg  212 (336)
T 2b25_A          182 DIKSLTFDAVALDML----NPHVTLPVFYPHLKHG  212 (336)
T ss_dssp             ------EEEEEECSS----STTTTHHHHGGGEEEE
T ss_pred             ccCCCCeeEEEECCC----CHHHHHHHHHHhcCCC
Confidence            567788999998532    3445899999999986

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=98.99  E-value=8.8e-11  Score=89.21  Aligned_cols=69  Identities=19%  Similarity=0.148  Sum_probs=57.4

Q ss_pred             CCCCCEEEEEcCCCchhHhhccCCeEEEEeCCC-----------CCceEEEecCCCCCC---CCCceeeEeecccccc--
Q psy10644        116 SKGRLVIADLGCGEAKLAAELTQHKVHSLDLVA-----------LNERVTSCDMTRTPL---KPYSVDVAVFCLSLMG--  179 (196)
Q Consensus       116 ~~~~~~ILDlGCG~G~~a~~l~~~~v~giDls~-----------~~~~~~~~d~~~lp~---~~~sfD~Vi~~~~lh~--  179 (196)
                      .+++.+|||||||..            ++|+|+           .++.+.++|++.+++   ++++||+|++..++|+  
T Consensus        10 ~~~g~~vL~~~~g~v------------~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l~~~~   77 (176)
T 2ld4_A           10 ISAGQFVAVVWDKSS------------PVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVPGSTT   77 (176)
T ss_dssp             CCTTSEEEEEECTTS------------CHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCSTTCCC
T ss_pred             CCCCCEEEEecCCce------------eeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChhhhcc
Confidence            345889999999973            255544           258899999998887   8899999999999964  


Q ss_pred             cCHHHHHHHHHHhccCC
Q psy10644        180 TDLAACIKEANRILKLG  196 (196)
Q Consensus       180 ~d~~~~l~e~~rvLkpg  196 (196)
                      .++..++++++|+||||
T Consensus        78 ~~~~~~l~~~~r~Lkpg   94 (176)
T 2ld4_A           78 LHSAEILAEIARILRPG   94 (176)
T ss_dssp             CCCHHHHHHHHHHEEEE
T ss_pred             cCHHHHHHHHHHHCCCC
Confidence            48999999999999997

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=98.98  E-value=1.4e-09  Score=86.59  Aligned_cols=78  Identities=15%  Similarity=0.175  Sum_probs=62.9

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC----------------CCceEEEecCCCCCCCCCceeeEeeccc
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAVFCLS  176 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~  176 (196)
                      ...++.+|||+|||+|.++..+  .+.+|+++|+++                .++.+..+|+....++++.||+|++.  
T Consensus        88 ~~~~~~~vldiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~--  165 (248)
T 2yvl_A           88 NLNKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGIFHAAFVD--  165 (248)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTCBSEEEEC--
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCcccEEEEC--
Confidence            3345789999999999998877  367999999997                25778888887744366789999973  


Q ss_pred             ccccCHHHHHHHHHHhccCC
Q psy10644        177 LMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       177 lh~~d~~~~l~e~~rvLkpg  196 (196)
                        ..++..+++++.++||||
T Consensus       166 --~~~~~~~l~~~~~~L~~g  183 (248)
T 2yvl_A          166 --VREPWHYLEKVHKSLMEG  183 (248)
T ss_dssp             --SSCGGGGHHHHHHHBCTT
T ss_pred             --CcCHHHHHHHHHHHcCCC
Confidence              336778999999999997

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=98.97  E-value=7.5e-10  Score=89.28  Aligned_cols=88  Identities=9%  Similarity=0.034  Sum_probs=65.7

Q ss_pred             HHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc----c-CCeEEEEeCCC----------------CCceEEEecCCCC-C
Q psy10644        105 DIIIKSIQERESKGRLVIADLGCGEAKLAAEL----T-QHKVHSLDLVA----------------LNERVTSCDMTRT-P  162 (196)
Q Consensus       105 ~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l----~-~~~v~giDls~----------------~~~~~~~~d~~~l-p  162 (196)
                      ..++..+.....  ..+|||||||+|..+..+    + +.+|+++|+++                .++.++.+|+... +
T Consensus        68 ~~ll~~l~~~~~--~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~  145 (247)
T 1sui_A           68 GQFLSMLLKLIN--AKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLD  145 (247)
T ss_dssp             HHHHHHHHHHTT--CCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHH
T ss_pred             HHHHHHHHHhhC--cCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHH
Confidence            344554443333  579999999999988777    2 67999999998                2577888887542 3


Q ss_pred             -C-----CCCceeeEeecccccccCHHHHHHHHHHhccCC
Q psy10644        163 -L-----KPYSVDVAVFCLSLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       163 -~-----~~~sfD~Vi~~~~lh~~d~~~~l~e~~rvLkpg  196 (196)
                       +     ++++||+|++...  ..+...+++++.++||||
T Consensus       146 ~l~~~~~~~~~fD~V~~d~~--~~~~~~~l~~~~~~LkpG  183 (247)
T 1sui_A          146 EMIKDEKNHGSYDFIFVDAD--KDNYLNYHKRLIDLVKVG  183 (247)
T ss_dssp             HHHHSGGGTTCBSEEEECSC--STTHHHHHHHHHHHBCTT
T ss_pred             HHHhccCCCCCEEEEEEcCc--hHHHHHHHHHHHHhCCCC
Confidence             2     2578999987643  236889999999999997

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=98.97  E-value=1.1e-09  Score=87.12  Aligned_cols=76  Identities=21%  Similarity=0.221  Sum_probs=58.6

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc---cCCeEEEEeCCC---------------CCceEEEecCCCCCCCCC-ceeeEeecc
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL---TQHKVHSLDLVA---------------LNERVTSCDMTRTPLKPY-SVDVAVFCL  175 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l---~~~~v~giDls~---------------~~~~~~~~d~~~lp~~~~-sfD~Vi~~~  175 (196)
                      ...++.+|||||||+|.++..+   .+.+|+++|+++               .++.+..+|+ ..+++++ .||+|++..
T Consensus        88 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~Ii~~~  166 (235)
T 1jg1_A           88 NLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDG-SKGFPPKAPYDVIIVTA  166 (235)
T ss_dssp             TCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCG-GGCCGGGCCEEEEEECS
T ss_pred             CCCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCc-ccCCCCCCCccEEEECC
Confidence            3445789999999999998887   227999999997               2578888887 3455444 499999999


Q ss_pred             cccccCHHHHHHHHHHhccCC
Q psy10644        176 SLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       176 ~lh~~d~~~~l~e~~rvLkpg  196 (196)
                      +++...     .++.++||||
T Consensus       167 ~~~~~~-----~~~~~~L~pg  182 (235)
T 1jg1_A          167 GAPKIP-----EPLIEQLKIG  182 (235)
T ss_dssp             BBSSCC-----HHHHHTEEEE
T ss_pred             cHHHHH-----HHHHHhcCCC
Confidence            986442     3788899986

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=98.97  E-value=7.2e-10  Score=88.27  Aligned_cols=88  Identities=7%  Similarity=0.003  Sum_probs=64.7

Q ss_pred             HHHHHHHHhhcCCCCCEEEEEcCCCchhHhhcc-----CCeEEEEeCCC----------------CCceEEEecCCC---
Q psy10644        105 DIIIKSIQERESKGRLVIADLGCGEAKLAAELT-----QHKVHSLDLVA----------------LNERVTSCDMTR---  160 (196)
Q Consensus       105 ~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l~-----~~~v~giDls~----------------~~~~~~~~d~~~---  160 (196)
                      ..++..+.....  ..+|||||||+|..+..+.     +.+|+++|+++                .++.++.+|+.+   
T Consensus        61 ~~~l~~l~~~~~--~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~  138 (232)
T 3cbg_A           61 AQFLGLLISLTG--AKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLE  138 (232)
T ss_dssp             HHHHHHHHHHHT--CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHH
T ss_pred             HHHHHHHHHhcC--CCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHH
Confidence            344544443333  5699999999999988772     46999999998                147788888633   


Q ss_pred             -CCCCC--CceeeEeecccccccCHHHHHHHHHHhccCC
Q psy10644        161 -TPLKP--YSVDVAVFCLSLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       161 -lp~~~--~sfD~Vi~~~~lh~~d~~~~l~e~~rvLkpg  196 (196)
                       ++..+  ++||+|++...  ..++..+++++.++||||
T Consensus       139 ~l~~~~~~~~fD~V~~d~~--~~~~~~~l~~~~~~Lkpg  175 (232)
T 3cbg_A          139 QLTQGKPLPEFDLIFIDAD--KRNYPRYYEIGLNLLRRG  175 (232)
T ss_dssp             HHHTSSSCCCEEEEEECSC--GGGHHHHHHHHHHTEEEE
T ss_pred             HHHhcCCCCCcCEEEECCC--HHHHHHHHHHHHHHcCCC
Confidence             33333  78999987654  346788999999999986

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=98.97  E-value=1.2e-09  Score=92.14  Aligned_cols=79  Identities=13%  Similarity=0.075  Sum_probs=61.3

Q ss_pred             CCCEEEEEcCCCchhHhhcc----CCeEEEEeCCC-------------------CCceEEEecCCCC--CCCCCceeeEe
Q psy10644        118 GRLVIADLGCGEAKLAAELT----QHKVHSLDLVA-------------------LNERVTSCDMTRT--PLKPYSVDVAV  172 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l~----~~~v~giDls~-------------------~~~~~~~~d~~~l--p~~~~sfD~Vi  172 (196)
                      ...+|||||||+|.++..+.    ..+|+++|+++                   .++.++.+|+...  .+++++||+|+
T Consensus       120 ~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlIi  199 (334)
T 1xj5_A          120 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVI  199 (334)
T ss_dssp             CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEE
T ss_pred             CCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEEE
Confidence            35799999999999998882    35999999997                   2477888887553  23567899999


Q ss_pred             ecccc--cccC---HHHHHHHHHHhccCC
Q psy10644        173 FCLSL--MGTD---LAACIKEANRILKLG  196 (196)
Q Consensus       173 ~~~~l--h~~d---~~~~l~e~~rvLkpg  196 (196)
                      +....  +..+   ...++++++++||||
T Consensus       200 ~d~~~p~~~~~~l~~~~~l~~~~~~Lkpg  228 (334)
T 1xj5_A          200 VDSSDPIGPAKELFEKPFFQSVARALRPG  228 (334)
T ss_dssp             ECCCCTTSGGGGGGSHHHHHHHHHHEEEE
T ss_pred             ECCCCccCcchhhhHHHHHHHHHHhcCCC
Confidence            86543  2222   578999999999986

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=98.96  E-value=4.3e-09  Score=89.03  Aligned_cols=78  Identities=22%  Similarity=0.267  Sum_probs=63.6

Q ss_pred             CCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC--------------CCceEEEecCCCCCCCCCceeeEeeccccc
Q psy10644        117 KGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA--------------LNERVTSCDMTRTPLKPYSVDVAVFCLSLM  178 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~--------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh  178 (196)
                      .+..+|||||||+|.++..+    ++.+++.+|+.+              .++.++.+|+...|++  .+|+|++..+||
T Consensus       178 ~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~--~~D~~~~~~vlh  255 (353)
T 4a6d_A          178 SVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLP--EADLYILARVLH  255 (353)
T ss_dssp             GGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC--CCSEEEEESCTTTSCCC--CCSEEEEESSGG
T ss_pred             ccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcccCceeeecCccccCCCC--CceEEEeeeecc
Confidence            34579999999999998877    566899999743              4789999998765554  479999999997


Q ss_pred             cc-C--HHHHHHHHHHhccCC
Q psy10644        179 GT-D--LAACIKEANRILKLG  196 (196)
Q Consensus       179 ~~-d--~~~~l~e~~rvLkpg  196 (196)
                      .. |  ...+|+++++.|+||
T Consensus       256 ~~~d~~~~~iL~~~~~al~pg  276 (353)
T 4a6d_A          256 DWADGKCSHLLERIYHTCKPG  276 (353)
T ss_dssp             GSCHHHHHHHHHHHHHHCCTT
T ss_pred             cCCHHHHHHHHHHHHhhCCCC
Confidence            44 3  357899999999997

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=98.96  E-value=8.5e-10  Score=89.91  Aligned_cols=77  Identities=22%  Similarity=0.204  Sum_probs=62.2

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc--c---CCeEEEEeCCC----------------CCceEEEecCCCCCCCCCceeeEee
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL--T---QHKVHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAVF  173 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l--~---~~~v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~  173 (196)
                      ...++.+|||+|||+|.++..+  .   +.+|+++|+++                .++.+..+|+... +++++||+|++
T Consensus       109 ~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~D~V~~  187 (277)
T 1o54_A          109 DVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG-FDEKDVDALFL  187 (277)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC-CSCCSEEEEEE
T ss_pred             CCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc-ccCCccCEEEE
Confidence            4445789999999999987777  2   56999999988                2577888888765 66778999997


Q ss_pred             cccccccCHHHHHHHHHHhccCC
Q psy10644        174 CLSLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       174 ~~~lh~~d~~~~l~e~~rvLkpg  196 (196)
                      .    ..++..++.++.++||||
T Consensus       188 ~----~~~~~~~l~~~~~~L~pg  206 (277)
T 1o54_A          188 D----VPDPWNYIDKCWEALKGG  206 (277)
T ss_dssp             C----CSCGGGTHHHHHHHEEEE
T ss_pred             C----CcCHHHHHHHHHHHcCCC
Confidence            3    346778999999999986

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=98.95  E-value=7.8e-10  Score=87.16  Aligned_cols=75  Identities=16%  Similarity=0.053  Sum_probs=60.1

Q ss_pred             CCCCEEEEEcCCCchhHhhc---cC------CeEEEEeCCC-------------C-------CceEEEecCCCCC----C
Q psy10644        117 KGRLVIADLGCGEAKLAAEL---TQ------HKVHSLDLVA-------------L-------NERVTSCDMTRTP----L  163 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l---~~------~~v~giDls~-------------~-------~~~~~~~d~~~lp----~  163 (196)
                      .++.+|||||||+|.++..+   .+      .+|+++|+++             .       ++.++.+|+....    .
T Consensus        79 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  158 (227)
T 2pbf_A           79 KPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKK  158 (227)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHH
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCc
Confidence            44789999999999998777   22      4999999997             1       5788899987754    5


Q ss_pred             CCCceeeEeecccccccCHHHHHHHHHHhccCC
Q psy10644        164 KPYSVDVAVFCLSLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       164 ~~~sfD~Vi~~~~lh~~d~~~~l~e~~rvLkpg  196 (196)
                      ..+.||+|++..+++.     ++.++.++||||
T Consensus       159 ~~~~fD~I~~~~~~~~-----~~~~~~~~Lkpg  186 (227)
T 2pbf_A          159 ELGLFDAIHVGASASE-----LPEILVDLLAEN  186 (227)
T ss_dssp             HHCCEEEEEECSBBSS-----CCHHHHHHEEEE
T ss_pred             cCCCcCEEEECCchHH-----HHHHHHHhcCCC
Confidence            5678999999988853     357889999986

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=98.94  E-value=1.1e-09  Score=89.82  Aligned_cols=91  Identities=14%  Similarity=0.144  Sum_probs=63.9

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCC---chhH---hhc-cCCeEEEEeCCC---------------CCceEEEecCCCC
Q psy10644        104 VDIIIKSIQERESKGRLVIADLGCGE---AKLA---AEL-TQHKVHSLDLVA---------------LNERVTSCDMTRT  161 (196)
Q Consensus       104 ~~~~~~~l~~~~~~~~~~ILDlGCG~---G~~a---~~l-~~~~v~giDls~---------------~~~~~~~~d~~~l  161 (196)
                      +...+.++....  ....|||||||+   |...   +.+ ++.+|+++|+|+               .++.++++|+.++
T Consensus        66 l~rav~~l~~~~--g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~  143 (277)
T 3giw_A           66 MNRAVAHLAKEA--GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDP  143 (277)
T ss_dssp             HHHHHHHHHHTS--CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCH
T ss_pred             HHHHHHHhcccc--CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccCh
Confidence            344445553211  246899999997   3333   222 678999999998               1478999999775


Q ss_pred             C------CCCCcee-----eEeeccccccc-C---HHHHHHHHHHhccCC
Q psy10644        162 P------LKPYSVD-----VAVFCLSLMGT-D---LAACIKEANRILKLG  196 (196)
Q Consensus       162 p------~~~~sfD-----~Vi~~~~lh~~-d---~~~~l~e~~rvLkpg  196 (196)
                      +      ...+.||     .|+++.+||+. +   +..+|++++++|+||
T Consensus       144 ~~~l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PG  193 (277)
T 3giw_A          144 ASILDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSG  193 (277)
T ss_dssp             HHHHTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTT
T ss_pred             hhhhcccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCC
Confidence            2      1134566     58888889876 4   678999999999998

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=98.94  E-value=1e-09  Score=89.71  Aligned_cols=76  Identities=14%  Similarity=0.063  Sum_probs=62.7

Q ss_pred             CCCCEEEEEcCCCchhHhhc--c--CCeEEEEeCCC---------------CCceEEEecCCCCCCCCCceeeEeecccc
Q psy10644        117 KGRLVIADLGCGEAKLAAEL--T--QHKVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDVAVFCLSL  177 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l--~--~~~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l  177 (196)
                      .++.+|||+|||+|.++..+  .  ..+|+|+|+++               .++.++.+|+..++. .+.||+|++....
T Consensus       118 ~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~-~~~~D~Vi~d~p~  196 (272)
T 3a27_A          118 NENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVEL-KDVADRVIMGYVH  196 (272)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCC-TTCEEEEEECCCS
T ss_pred             CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCc-cCCceEEEECCcc
Confidence            34789999999999998888  2  44999999998               367899999987744 6789999887654


Q ss_pred             cccCHHHHHHHHHHhccCC
Q psy10644        178 MGTDLAACIKEANRILKLG  196 (196)
Q Consensus       178 h~~d~~~~l~e~~rvLkpg  196 (196)
                         +...++.++.++||||
T Consensus       197 ---~~~~~l~~~~~~Lkpg  212 (272)
T 3a27_A          197 ---KTHKFLDKTFEFLKDR  212 (272)
T ss_dssp             ---SGGGGHHHHHHHEEEE
T ss_pred             ---cHHHHHHHHHHHcCCC
Confidence               6677899999999986

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=98.94  E-value=2.2e-09  Score=88.88  Aligned_cols=80  Identities=13%  Similarity=0.024  Sum_probs=59.6

Q ss_pred             CCCCCEEEEEcCCC------ch-hH-hhcc-CCeEEEEeCCC--CCceE-EEecCCCCCCCCCceeeEeecccccc----
Q psy10644        116 SKGRLVIADLGCGE------AK-LA-AELT-QHKVHSLDLVA--LNERV-TSCDMTRTPLKPYSVDVAVFCLSLMG----  179 (196)
Q Consensus       116 ~~~~~~ILDlGCG~------G~-~a-~~l~-~~~v~giDls~--~~~~~-~~~d~~~lp~~~~sfD~Vi~~~~lh~----  179 (196)
                      ..++.+|||||||+      |. .+ +.+. +.+|+|+|+++  .++.+ +++|+..++++ ++||+|++....+.    
T Consensus        61 l~~g~~VLDLGcGsg~~~GpGs~~~a~~~~~~~~V~gvDis~~v~~v~~~i~gD~~~~~~~-~~fD~Vvsn~~~~~~g~~  139 (290)
T 2xyq_A           61 VPYNMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDFVSDADSTLIGDCATVHTA-NKWDLIISDMYDPRTKHV  139 (290)
T ss_dssp             CCTTCEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCCBCSSSEEEESCGGGCCCS-SCEEEEEECCCCCC---C
T ss_pred             CCCCCEEEEeCCCCCCCCCcHHHHHHHHcCCCCEEEEEECCCCCCCCEEEEECccccCCcc-CcccEEEEcCCccccccc
Confidence            34578999999944      64 22 2223 57999999999  46789 99999887764 68999998654321    


Q ss_pred             -------c-CHHHHHHHHHHhccCC
Q psy10644        180 -------T-DLAACIKEANRILKLG  196 (196)
Q Consensus       180 -------~-d~~~~l~e~~rvLkpg  196 (196)
                             . ....++++++|+||||
T Consensus       140 ~~d~~~~~~l~~~~l~~a~r~LkpG  164 (290)
T 2xyq_A          140 TKENDSKEGFFTYLCGFIKQKLALG  164 (290)
T ss_dssp             CSCCCCCCTHHHHHHHHHHHHEEEE
T ss_pred             cccccchHHHHHHHHHHHHHhcCCC
Confidence                   1 2458999999999996

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=98.93  E-value=2e-09  Score=84.71  Aligned_cols=76  Identities=17%  Similarity=0.050  Sum_probs=60.4

Q ss_pred             CCCCCEEEEEcCCCchhHhhcc---C--CeEEEEeCCC--------------------CCceEEEecCCCCCCCCCceee
Q psy10644        116 SKGRLVIADLGCGEAKLAAELT---Q--HKVHSLDLVA--------------------LNERVTSCDMTRTPLKPYSVDV  170 (196)
Q Consensus       116 ~~~~~~ILDlGCG~G~~a~~l~---~--~~v~giDls~--------------------~~~~~~~~d~~~lp~~~~sfD~  170 (196)
                      ..++.+|||||||+|.++..+.   +  .+|+++|+++                    .++.++.+|+...+.+++.||+
T Consensus        75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  154 (226)
T 1i1n_A           75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA  154 (226)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCE
Confidence            3457899999999999988771   2  5999999997                    1578888998766556778999


Q ss_pred             EeecccccccCHHHHHHHHHHhccCC
Q psy10644        171 AVFCLSLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       171 Vi~~~~lh~~d~~~~l~e~~rvLkpg  196 (196)
                      |++...++.     ++.++.++||||
T Consensus       155 i~~~~~~~~-----~~~~~~~~Lkpg  175 (226)
T 1i1n_A          155 IHVGAAAPV-----VPQALIDQLKPG  175 (226)
T ss_dssp             EEECSBBSS-----CCHHHHHTEEEE
T ss_pred             EEECCchHH-----HHHHHHHhcCCC
Confidence            999888743     246888999986

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=98.93  E-value=3.4e-09  Score=82.17  Aligned_cols=75  Identities=19%  Similarity=0.154  Sum_probs=59.3

Q ss_pred             CCCCCEEEEEcCCCchhHhhc--cC-CeEEEEeCCC--------------CCceEEEecCCCCCCCCCceeeEeeccccc
Q psy10644        116 SKGRLVIADLGCGEAKLAAEL--TQ-HKVHSLDLVA--------------LNERVTSCDMTRTPLKPYSVDVAVFCLSLM  178 (196)
Q Consensus       116 ~~~~~~ILDlGCG~G~~a~~l--~~-~~v~giDls~--------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh  178 (196)
                      ..++.+|||+|||+|.++..+  .+ .+|+|+|+++              .++.++.+|+..++   ++||+|++...+|
T Consensus        47 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p~~  123 (207)
T 1wy7_A           47 DIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFN---SRVDIVIMNPPFG  123 (207)
T ss_dssp             SSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCC---CCCSEEEECCCCS
T ss_pred             CCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHcC---CCCCEEEEcCCCc
Confidence            345789999999999998888  33 3799999998              16789999998864   4899999988875


Q ss_pred             cc---CHHHHHHHHHHhc
Q psy10644        179 GT---DLAACIKEANRIL  193 (196)
Q Consensus       179 ~~---d~~~~l~e~~rvL  193 (196)
                      ..   ....+++++.++|
T Consensus       124 ~~~~~~~~~~l~~~~~~l  141 (207)
T 1wy7_A          124 SQRKHADRPFLLKAFEIS  141 (207)
T ss_dssp             SSSTTTTHHHHHHHHHHC
T ss_pred             cccCCchHHHHHHHHHhc
Confidence            33   3457788888776

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=98.92  E-value=3.3e-09  Score=87.91  Aligned_cols=64  Identities=23%  Similarity=0.358  Sum_probs=48.8

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC---------------CCceEEEecCCCCCCCCCceeeEeecccc
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDVAVFCLSL  177 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l  177 (196)
                      ...++.+|||||||+|.++..+  .+.+|+|+|+++               .++.++.+|+..++++  +||+|++....
T Consensus        39 ~~~~~~~VLDiG~G~G~lt~~La~~~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~--~~D~Vv~n~py  116 (299)
T 2h1r_A           39 KIKSSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFP--KFDVCTANIPY  116 (299)
T ss_dssp             CCCTTCEEEEECCTTSTTHHHHTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCC--CCSEEEEECCG
T ss_pred             CCCCcCEEEEEcCcCcHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCcc--cCCEEEEcCCc
Confidence            3445789999999999999998  356999999997               3678899999887764  79999998777


Q ss_pred             ccc
Q psy10644        178 MGT  180 (196)
Q Consensus       178 h~~  180 (196)
                      ++.
T Consensus       117 ~~~  119 (299)
T 2h1r_A          117 KIS  119 (299)
T ss_dssp             GGH
T ss_pred             ccc
Confidence            654

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=98.91  E-value=1.6e-09  Score=85.39  Aligned_cols=87  Identities=18%  Similarity=0.130  Sum_probs=64.1

Q ss_pred             HHHHHHHhhcCCCCCEEEEEcCCCchhHhhcc-----CCeEEEEeCCC----------------CCceEEEecCCCC-C-
Q psy10644        106 IIIKSIQERESKGRLVIADLGCGEAKLAAELT-----QHKVHSLDLVA----------------LNERVTSCDMTRT-P-  162 (196)
Q Consensus       106 ~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l~-----~~~v~giDls~----------------~~~~~~~~d~~~l-p-  162 (196)
                      .++..+.....  +.+|||||||+|.++..+.     +.+|+++|+++                .++.++.+|+... + 
T Consensus        59 ~~l~~l~~~~~--~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~  136 (229)
T 2avd_A           59 QLLANLARLIQ--AKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDE  136 (229)
T ss_dssp             HHHHHHHHHTT--CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHH
T ss_pred             HHHHHHHHhcC--CCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHH
Confidence            34444433333  6799999999999988872     56999999998                2578888887442 1 


Q ss_pred             CCC----CceeeEeecccccccCHHHHHHHHHHhccCC
Q psy10644        163 LKP----YSVDVAVFCLSLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       163 ~~~----~sfD~Vi~~~~lh~~d~~~~l~e~~rvLkpg  196 (196)
                      +++    ++||+|++...  ..+...+++++.++||||
T Consensus       137 ~~~~~~~~~~D~v~~d~~--~~~~~~~l~~~~~~L~pg  172 (229)
T 2avd_A          137 LLAAGEAGTFDVAVVDAD--KENCSAYYERCLQLLRPG  172 (229)
T ss_dssp             HHHTTCTTCEEEEEECSC--STTHHHHHHHHHHHEEEE
T ss_pred             HHhcCCCCCccEEEECCC--HHHHHHHHHHHHHHcCCC
Confidence            211    68999998654  336788999999999986

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=98.90  E-value=1.4e-09  Score=90.68  Aligned_cols=78  Identities=15%  Similarity=0.050  Sum_probs=61.8

Q ss_pred             CCEEEEEcCCCchhHhhcc----CCeEEEEeCCC--------------------CCceEEEecCCC-CCCCCCceeeEee
Q psy10644        119 RLVIADLGCGEAKLAAELT----QHKVHSLDLVA--------------------LNERVTSCDMTR-TPLKPYSVDVAVF  173 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l~----~~~v~giDls~--------------------~~~~~~~~d~~~-lp~~~~sfD~Vi~  173 (196)
                      ..+|||||||+|.++..+.    ..+|+++|+++                    .++.++.+|+.. ++..+++||+|++
T Consensus        78 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~  157 (314)
T 1uir_A           78 PKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVII  157 (314)
T ss_dssp             CCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEEE
T ss_pred             CCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEEEE
Confidence            5799999999999998882    35899999987                    146788888755 3445788999999


Q ss_pred             cccccc---c-----CHHHHHHHHHHhccCC
Q psy10644        174 CLSLMG---T-----DLAACIKEANRILKLG  196 (196)
Q Consensus       174 ~~~lh~---~-----d~~~~l~e~~rvLkpg  196 (196)
                      ....+.   .     ....++++++++||||
T Consensus       158 d~~~~~~~~~~~~~l~~~~~l~~~~~~Lkpg  188 (314)
T 1uir_A          158 DLTDPVGEDNPARLLYTVEFYRLVKAHLNPG  188 (314)
T ss_dssp             ECCCCBSTTCGGGGGSSHHHHHHHHHTEEEE
T ss_pred             CCCCcccccCcchhccHHHHHHHHHHhcCCC
Confidence            776654   1     1478999999999986

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=98.90  E-value=3e-09  Score=89.79  Aligned_cols=81  Identities=20%  Similarity=0.071  Sum_probs=65.2

Q ss_pred             CCCCCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC---------------CCceEEEecCCCCCCCCCceeeEeecc
Q psy10644        116 SKGRLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDVAVFCL  175 (196)
Q Consensus       116 ~~~~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~  175 (196)
                      ..++..|||+|||+|.++..+     +..+|+|+|+++               .++.+.++|+.+++.+.+.||+|++..
T Consensus       201 ~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~~~~D~Ii~np  280 (354)
T 3tma_A          201 ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFFPEVDRILANP  280 (354)
T ss_dssp             CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTCCCCSEEEECC
T ss_pred             CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccccCCCCEEEECC
Confidence            345779999999999997777     237999999998               268999999999888778899999965


Q ss_pred             ccc---c-----c-CHHHHHHHHHHhccCC
Q psy10644        176 SLM---G-----T-DLAACIKEANRILKLG  196 (196)
Q Consensus       176 ~lh---~-----~-d~~~~l~e~~rvLkpg  196 (196)
                      .+.   .     . .+..+++++.++||||
T Consensus       281 Pyg~r~~~~~~~~~~~~~~~~~~~~~Lkpg  310 (354)
T 3tma_A          281 PHGLRLGRKEGLFHLYWDFLRGALALLPPG  310 (354)
T ss_dssp             CSCC----CHHHHHHHHHHHHHHHHTSCTT
T ss_pred             CCcCccCCcccHHHHHHHHHHHHHHhcCCC
Confidence            442   1     1 2478999999999986

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=98.90  E-value=2.5e-09  Score=89.28  Aligned_cols=82  Identities=13%  Similarity=0.156  Sum_probs=62.2

Q ss_pred             cCCCCCEEEEEcCCCchhHhhcc-----CCeEEEEeCCC---------------CCceEEEecCCCCCCCCCceeeEeec
Q psy10644        115 ESKGRLVIADLGCGEAKLAAELT-----QHKVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDVAVFC  174 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l~-----~~~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~  174 (196)
                      .+.++.+|||+|||+|..+..+.     ..+|+++|+++               .++.++.+|+..++..+++||+|++.
T Consensus       115 ~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d  194 (315)
T 1ixk_A          115 DPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLD  194 (315)
T ss_dssp             CCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEE
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEEe
Confidence            34457899999999999877772     36899999998               36788889988776556789999983


Q ss_pred             c------ccc-ccC----------------HHHHHHHHHHhccCC
Q psy10644        175 L------SLM-GTD----------------LAACIKEANRILKLG  196 (196)
Q Consensus       175 ~------~lh-~~d----------------~~~~l~e~~rvLkpg  196 (196)
                      .      +++ ..+                ...+|+++.++||||
T Consensus       195 ~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpG  239 (315)
T 1ixk_A          195 APCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPG  239 (315)
T ss_dssp             CCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEE
T ss_pred             CCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            2      121 111                258999999999986

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=98.89  E-value=1.1e-09  Score=92.29  Aligned_cols=79  Identities=13%  Similarity=-0.030  Sum_probs=61.3

Q ss_pred             CCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC---------------C--CceEEEecCCCCCC----CCCceeeEeec
Q psy10644        118 GRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA---------------L--NERVTSCDMTRTPL----KPYSVDVAVFC  174 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~---------------~--~~~~~~~d~~~lp~----~~~sfD~Vi~~  174 (196)
                      ++.+|||+|||+|.++..+  .+.+|+++|+|+               .  ++.++++|+..+..    ..++||+|++.
T Consensus       153 ~~~~VLDlgcGtG~~sl~la~~ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~d  232 (332)
T 2igt_A          153 RPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILTD  232 (332)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEEC
T ss_pred             CCCcEEEcccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEEEC
Confidence            3679999999999998888  456999999998               1  37888888866421    15689999984


Q ss_pred             cc----------cccc-CHHHHHHHHHHhccCC
Q psy10644        175 LS----------LMGT-DLAACIKEANRILKLG  196 (196)
Q Consensus       175 ~~----------lh~~-d~~~~l~e~~rvLkpg  196 (196)
                      .-          ++.. +...++.++.++||||
T Consensus       233 PP~~~~~~~~~~~~~~~~~~~ll~~~~~~Lkpg  265 (332)
T 2igt_A          233 PPKFGRGTHGEVWQLFDHLPLMLDICREILSPK  265 (332)
T ss_dssp             CCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTT
T ss_pred             CccccCCchHHHHHHHHHHHHHHHHHHHhcCcC
Confidence            22          2222 6789999999999997

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=98.89  E-value=1.3e-09  Score=86.08  Aligned_cols=74  Identities=19%  Similarity=0.150  Sum_probs=58.8

Q ss_pred             CCCCEEEEEcCCCchhHhhc---cC-------CeEEEEeCCC--------------------CCceEEEecCCCCCCCC-
Q psy10644        117 KGRLVIADLGCGEAKLAAEL---TQ-------HKVHSLDLVA--------------------LNERVTSCDMTRTPLKP-  165 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l---~~-------~~v~giDls~--------------------~~~~~~~~d~~~lp~~~-  165 (196)
                      .++.+|||||||+|.++..+   .+       .+|+++|+++                    .++.+..+|+.. ++++ 
T Consensus        83 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~-~~~~~  161 (227)
T 1r18_A           83 KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRK-GYPPN  161 (227)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGG-CCGGG
T ss_pred             CCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCccc-CCCcC
Confidence            44789999999999998777   22       5999999997                    157888888876 4444 


Q ss_pred             CceeeEeecccccccCHHHHHHHHHHhccCC
Q psy10644        166 YSVDVAVFCLSLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       166 ~sfD~Vi~~~~lh~~d~~~~l~e~~rvLkpg  196 (196)
                      +.||+|++..+++..     ++++.++||||
T Consensus       162 ~~fD~I~~~~~~~~~-----~~~~~~~Lkpg  187 (227)
T 1r18_A          162 APYNAIHVGAAAPDT-----PTELINQLASG  187 (227)
T ss_dssp             CSEEEEEECSCBSSC-----CHHHHHTEEEE
T ss_pred             CCccEEEECCchHHH-----HHHHHHHhcCC
Confidence            789999999988543     27889999986

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=98.88  E-value=4.3e-09  Score=87.28  Aligned_cols=66  Identities=20%  Similarity=0.217  Sum_probs=56.5

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC-------------CCceEEEecCCCCCCCCCceeeEeecccccc
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA-------------LNERVTSCDMTRTPLKPYSVDVAVFCLSLMG  179 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~-------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~  179 (196)
                      ...++.+|||||||+|.++..|  .+.+|+++|+++             .++.++.+|+..+++++..||+|+++..++.
T Consensus        47 ~~~~~~~VLEIG~G~G~lT~~La~~~~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~~~~fD~Iv~NlPy~i  126 (295)
T 3gru_A           47 NLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLNKLDFNKVVANLPYQI  126 (295)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGGGSCCSEEEEECCGGG
T ss_pred             CCCCcCEEEEECCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCcccCCccEEEEeCcccc
Confidence            4445789999999999999998  567999999998             4789999999998888888999998877654


Q ss_pred             c
Q psy10644        180 T  180 (196)
Q Consensus       180 ~  180 (196)
                      .
T Consensus       127 s  127 (295)
T 3gru_A          127 S  127 (295)
T ss_dssp             H
T ss_pred             c
Confidence            3

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=98.88  E-value=2.7e-09  Score=84.97  Aligned_cols=76  Identities=12%  Similarity=0.035  Sum_probs=59.3

Q ss_pred             CCEEEEEcCCCchhHhhc----c-CCeEEEEeCCC----------------CCceEEEecCCC-CC--------------
Q psy10644        119 RLVIADLGCGEAKLAAEL----T-QHKVHSLDLVA----------------LNERVTSCDMTR-TP--------------  162 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l----~-~~~v~giDls~----------------~~~~~~~~d~~~-lp--------------  162 (196)
                      +.+|||||||+|.++..+    . +.+|+++|+++                .++.++.+|+.. ++              
T Consensus        61 ~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~  140 (239)
T 2hnk_A           61 AKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASD  140 (239)
T ss_dssp             CSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGTT
T ss_pred             cCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccccccc
Confidence            679999999999998877    2 57999999998                137788888643 22              


Q ss_pred             CCC--CceeeEeecccccccCHHHHHHHHHHhccCC
Q psy10644        163 LKP--YSVDVAVFCLSLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       163 ~~~--~sfD~Vi~~~~lh~~d~~~~l~e~~rvLkpg  196 (196)
                      +++  ++||+|++....  .+...+++++.++||||
T Consensus       141 f~~~~~~fD~I~~~~~~--~~~~~~l~~~~~~L~pg  174 (239)
T 2hnk_A          141 FAFGPSSIDLFFLDADK--ENYPNYYPLILKLLKPG  174 (239)
T ss_dssp             TCCSTTCEEEEEECSCG--GGHHHHHHHHHHHEEEE
T ss_pred             ccCCCCCcCEEEEeCCH--HHHHHHHHHHHHHcCCC
Confidence            222  789999987542  35678999999999986

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.88  E-value=1.5e-09  Score=87.15  Aligned_cols=89  Identities=17%  Similarity=0.194  Sum_probs=62.6

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC-------------CCceEEEecCCCCCCCC-Cc
Q psy10644        104 VDIIIKSIQERESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA-------------LNERVTSCDMTRTPLKP-YS  167 (196)
Q Consensus       104 ~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~-------------~~~~~~~~d~~~lp~~~-~s  167 (196)
                      .+.+++.+   ...++.+|||||||+|.++..+  .+.+|+|+|+++             .++.++.+|+..++++. ++
T Consensus        18 ~~~i~~~~---~~~~~~~VLDiG~G~G~~~~~l~~~~~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~   94 (245)
T 1yub_A           18 LNQIIKQL---NLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQR   94 (245)
T ss_dssp             HHHHHHHC---CCCSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSE
T ss_pred             HHHHHHhc---CCCCCCEEEEEeCCCCHHHHHHHHhCCeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcccCCC
Confidence            44455444   3345779999999999998888  457999999998             24678889998888774 68


Q ss_pred             eeeEeecccccc------------cCHHHHH----HHHHHhccCC
Q psy10644        168 VDVAVFCLSLMG------------TDLAACI----KEANRILKLG  196 (196)
Q Consensus       168 fD~Vi~~~~lh~------------~d~~~~l----~e~~rvLkpg  196 (196)
                      | .|+++.-.+.            .+...++    +.+.|+||||
T Consensus        95 f-~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~  138 (245)
T 1yub_A           95 Y-KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIH  138 (245)
T ss_dssp             E-EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGG
T ss_pred             c-EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCC
Confidence            8 6666532221            1233344    6688888875

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=98.88  E-value=2.3e-09  Score=89.14  Aligned_cols=79  Identities=13%  Similarity=-0.013  Sum_probs=59.1

Q ss_pred             CCCEEEEEcCCCchhHhhcc----CCeEEEEeCCC-------------------CCceEEEecCCC-CCCCCCceeeEee
Q psy10644        118 GRLVIADLGCGEAKLAAELT----QHKVHSLDLVA-------------------LNERVTSCDMTR-TPLKPYSVDVAVF  173 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l~----~~~v~giDls~-------------------~~~~~~~~d~~~-lp~~~~sfD~Vi~  173 (196)
                      ...+|||||||+|.++..+.    ..+|+++|+++                   .++.++.+|+.. ++..+++||+|++
T Consensus        95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii~  174 (304)
T 2o07_A           95 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIIT  174 (304)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEE
T ss_pred             CCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEEE
Confidence            35799999999999999882    35899999987                   246788888754 3445688999998


Q ss_pred             ccccccc-----CHHHHHHHHHHhccCC
Q psy10644        174 CLSLMGT-----DLAACIKEANRILKLG  196 (196)
Q Consensus       174 ~~~lh~~-----d~~~~l~e~~rvLkpg  196 (196)
                      ....+..     ....++++++++||||
T Consensus       175 d~~~~~~~~~~l~~~~~l~~~~~~Lkpg  202 (304)
T 2o07_A          175 DSSDPMGPAESLFKESYYQLMKTALKED  202 (304)
T ss_dssp             ECC-----------CHHHHHHHHHEEEE
T ss_pred             CCCCCCCcchhhhHHHHHHHHHhccCCC
Confidence            6554321     2357899999999986

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=98.87  E-value=3.5e-09  Score=90.23  Aligned_cols=78  Identities=15%  Similarity=0.096  Sum_probs=64.4

Q ss_pred             CCCEEEEEcCCCchhHhhc--c--CCeEEEEeCCC---------------CCceEEEecCCC-CCC-CCCceeeEeeccc
Q psy10644        118 GRLVIADLGCGEAKLAAEL--T--QHKVHSLDLVA---------------LNERVTSCDMTR-TPL-KPYSVDVAVFCLS  176 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l--~--~~~v~giDls~---------------~~~~~~~~d~~~-lp~-~~~sfD~Vi~~~~  176 (196)
                      ++.+|||+| |+|.++..+  .  ..+|+++|+++               .++.++.+|+.. +|. .+++||+|++...
T Consensus       172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p  250 (373)
T 2qm3_A          172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDPP  250 (373)
T ss_dssp             TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECCC
T ss_pred             CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECCC
Confidence            467999999 999998887  2  35999999997               268899999987 664 3578999999877


Q ss_pred             ccccCHHHHHHHHHHhccCC
Q psy10644        177 LMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       177 lh~~d~~~~l~e~~rvLkpg  196 (196)
                      ++......+++++.++||||
T Consensus       251 ~~~~~~~~~l~~~~~~Lkpg  270 (373)
T 2qm3_A          251 ETLEAIRAFVGRGIATLKGP  270 (373)
T ss_dssp             SSHHHHHHHHHHHHHTBCST
T ss_pred             CchHHHHHHHHHHHHHcccC
Confidence            65444688999999999996

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=98.86  E-value=1.6e-09  Score=90.69  Aligned_cols=78  Identities=23%  Similarity=0.252  Sum_probs=61.4

Q ss_pred             CCEEEEEcCCCchhHhhc----cCCeEEEEeCCC---------------CCceEEEecCCCC--CCCCCceeeEeecccc
Q psy10644        119 RLVIADLGCGEAKLAAEL----TQHKVHSLDLVA---------------LNERVTSCDMTRT--PLKPYSVDVAVFCLSL  177 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l----~~~~v~giDls~---------------~~~~~~~~d~~~l--p~~~~sfD~Vi~~~~l  177 (196)
                      ..+|||||||+|.+++.+    ++.+|+++|+++               .++.++.+|...+  .+++++||+|++....
T Consensus        90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~  169 (317)
T 3gjy_A           90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFA  169 (317)
T ss_dssp             GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCST
T ss_pred             CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCC
Confidence            349999999999998887    356999999998               3678899997653  3457899999986543


Q ss_pred             cc-c----CHHHHHHHHHHhccCC
Q psy10644        178 MG-T----DLAACIKEANRILKLG  196 (196)
Q Consensus       178 h~-~----d~~~~l~e~~rvLkpg  196 (196)
                      +. .    ....++++++++||||
T Consensus       170 ~~~~~~~L~t~efl~~~~r~Lkpg  193 (317)
T 3gjy_A          170 GAITPQNFTTVEFFEHCHRGLAPG  193 (317)
T ss_dssp             TSCCCGGGSBHHHHHHHHHHEEEE
T ss_pred             ccccchhhhHHHHHHHHHHhcCCC
Confidence            32 1    2378999999999986

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=98.86  E-value=4.5e-09  Score=86.96  Aligned_cols=78  Identities=10%  Similarity=-0.005  Sum_probs=58.4

Q ss_pred             CCEEEEEcCCCchhHhhcc----CCeEEEEeCCC-------------------CCceEEEecCCC-CCCCCCceeeEeec
Q psy10644        119 RLVIADLGCGEAKLAAELT----QHKVHSLDLVA-------------------LNERVTSCDMTR-TPLKPYSVDVAVFC  174 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l~----~~~v~giDls~-------------------~~~~~~~~d~~~-lp~~~~sfD~Vi~~  174 (196)
                      ..+|||||||+|.++..+.    ..+|+++|+++                   .++.++.+|+.. ++..+++||+|++.
T Consensus        91 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d  170 (296)
T 1inl_A           91 PKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIIID  170 (296)
T ss_dssp             CCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEEE
T ss_pred             CCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEEc
Confidence            5799999999999988882    35999999987                   246788888754 34456789999975


Q ss_pred             cccccc------CHHHHHHHHHHhccCC
Q psy10644        175 LSLMGT------DLAACIKEANRILKLG  196 (196)
Q Consensus       175 ~~lh~~------d~~~~l~e~~rvLkpg  196 (196)
                      ..-++.      ....++++++++||||
T Consensus       171 ~~~~~~~~~~~l~~~~~l~~~~~~Lkpg  198 (296)
T 1inl_A          171 STDPTAGQGGHLFTEEFYQACYDALKED  198 (296)
T ss_dssp             C----------CCSHHHHHHHHHHEEEE
T ss_pred             CCCcccCchhhhhHHHHHHHHHHhcCCC
Confidence            432211      2378999999999986

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=98.86  E-value=3.1e-09  Score=87.37  Aligned_cols=79  Identities=16%  Similarity=0.119  Sum_probs=60.4

Q ss_pred             CCCEEEEEcCCCchhHhhcc----CCeEEEEeCCC-------------------CCceEEEecCCC-CCCCCCceeeEee
Q psy10644        118 GRLVIADLGCGEAKLAAELT----QHKVHSLDLVA-------------------LNERVTSCDMTR-TPLKPYSVDVAVF  173 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l~----~~~v~giDls~-------------------~~~~~~~~d~~~-lp~~~~sfD~Vi~  173 (196)
                      +..+|||||||+|.+++.+.    ..+|+++|+++                   .++.++.+|+.. ++..+++||+|++
T Consensus        78 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~  157 (283)
T 2i7c_A           78 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV  157 (283)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred             CCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEEE
Confidence            35799999999999999882    35999999987                   246788888754 2333678999998


Q ss_pred             ccccc-cc--CH--HHHHHHHHHhccCC
Q psy10644        174 CLSLM-GT--DL--AACIKEANRILKLG  196 (196)
Q Consensus       174 ~~~lh-~~--d~--~~~l~e~~rvLkpg  196 (196)
                      ....+ ..  ..  ..++++++++||||
T Consensus       158 d~~~~~~~~~~l~~~~~l~~~~~~L~pg  185 (283)
T 2i7c_A          158 DSSDPIGPAETLFNQNFYEKIYNALKPN  185 (283)
T ss_dssp             ECCCTTTGGGGGSSHHHHHHHHHHEEEE
T ss_pred             cCCCCCCcchhhhHHHHHHHHHHhcCCC
Confidence            65443 22  22  78999999999986

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=98.85  E-value=3.3e-09  Score=87.28  Aligned_cols=76  Identities=17%  Similarity=0.197  Sum_probs=58.4

Q ss_pred             CCEEEEEcCCCchhHhhc---cCCeEEEEeCCC---------------C-CceEEEecCCCCCCCCCce---eeEeeccc
Q psy10644        119 RLVIADLGCGEAKLAAEL---TQHKVHSLDLVA---------------L-NERVTSCDMTRTPLKPYSV---DVAVFCLS  176 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l---~~~~v~giDls~---------------~-~~~~~~~d~~~lp~~~~sf---D~Vi~~~~  176 (196)
                      +.+|||+|||+|.++..+   ++.+|+|+|+|+               . ++.++.+|+.. +++ ++|   |+|+++--
T Consensus       124 ~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~-~~~-~~f~~~D~IvsnPP  201 (284)
T 1nv8_A          124 IKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLE-PFK-EKFASIEMILSNPP  201 (284)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTG-GGG-GGTTTCCEEEECCC
T ss_pred             CCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchh-hcc-cccCCCCEEEEcCC
Confidence            579999999999998887   367999999998               1 38899999876 333 578   99999621


Q ss_pred             c------------cc--------cCHHHHHHHHH-HhccCC
Q psy10644        177 L------------MG--------TDLAACIKEAN-RILKLG  196 (196)
Q Consensus       177 l------------h~--------~d~~~~l~e~~-rvLkpg  196 (196)
                      .            |.        .+...+++++. +.||||
T Consensus       202 yi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pg  242 (284)
T 1nv8_A          202 YVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSG  242 (284)
T ss_dssp             CBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTT
T ss_pred             CCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCC
Confidence            1            11        12347899999 999986

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=98.85  E-value=7.3e-09  Score=83.44  Aligned_cols=89  Identities=17%  Similarity=0.115  Sum_probs=65.4

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc-cCCeEEEEeCCC--------------CCceEEEecCCCCCCCCCce
Q psy10644        104 VDIIIKSIQERESKGRLVIADLGCGEAKLAAEL-TQHKVHSLDLVA--------------LNERVTSCDMTRTPLKPYSV  168 (196)
Q Consensus       104 ~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l-~~~~v~giDls~--------------~~~~~~~~d~~~lp~~~~sf  168 (196)
                      ++.+...+...  ....+|||||||.|-++..+ .+.+|+++|+++              .+..+.++|....+++ +.|
T Consensus        93 ld~fY~~i~~~--~~p~~VLDlGCG~gpLal~~~~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~-~~~  169 (253)
T 3frh_A           93 LDTLYDFIFSA--ETPRRVLDIACGLNPLALYERGIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPA-EAG  169 (253)
T ss_dssp             HHHHHHHHTSS--CCCSEEEEETCTTTHHHHHHTTCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCC-CBC
T ss_pred             HHHHHHHHhcC--CCCCeEEEecCCccHHHHHhccCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCC-CCc
Confidence            44444444433  24679999999999998876 567999999999              3567888898776755 489


Q ss_pred             eeEeeccccccc---CHHHHHHHHHHhccCC
Q psy10644        169 DVAVFCLSLMGT---DLAACIKEANRILKLG  196 (196)
Q Consensus       169 D~Vi~~~~lh~~---d~~~~l~e~~rvLkpg  196 (196)
                      |+|++..++|+.   .....+ ++.+.|+++
T Consensus       170 DvvLllk~lh~LE~q~~~~~~-~ll~aL~~~  199 (253)
T 3frh_A          170 DLALIFKLLPLLEREQAGSAM-ALLQSLNTP  199 (253)
T ss_dssp             SEEEEESCHHHHHHHSTTHHH-HHHHHCBCS
T ss_pred             chHHHHHHHHHhhhhchhhHH-HHHHHhcCC
Confidence            999999999754   333344 777777764

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=98.84  E-value=2e-09  Score=87.90  Aligned_cols=81  Identities=14%  Similarity=0.116  Sum_probs=62.7

Q ss_pred             CCCCCEEEEEcCCCchhHhhc----cC-CeEEEEeCCC---------------CCceEEEecCCCCCC----CCCceeeE
Q psy10644        116 SKGRLVIADLGCGEAKLAAEL----TQ-HKVHSLDLVA---------------LNERVTSCDMTRTPL----KPYSVDVA  171 (196)
Q Consensus       116 ~~~~~~ILDlGCG~G~~a~~l----~~-~~v~giDls~---------------~~~~~~~~d~~~lp~----~~~sfD~V  171 (196)
                      +.++.+|||+|||+|..+..+    .+ .+|+++|+++               .++.++.+|+..++.    ..+.||+|
T Consensus        81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V  160 (274)
T 3ajd_A           81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKI  160 (274)
T ss_dssp             CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEE
Confidence            345789999999999988776    23 6999999998               267888888876654    36789999


Q ss_pred             eeccccc------------------c-cCHHHHHHHHHHhccCC
Q psy10644        172 VFCLSLM------------------G-TDLAACIKEANRILKLG  196 (196)
Q Consensus       172 i~~~~lh------------------~-~d~~~~l~e~~rvLkpg  196 (196)
                      ++.....                  . .....+++++.++||||
T Consensus       161 l~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~Lkpg  204 (274)
T 3ajd_A          161 LLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKD  204 (274)
T ss_dssp             EEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEE
T ss_pred             EEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            9863221                  1 25678999999999986

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=98.84  E-value=6.9e-09  Score=84.55  Aligned_cols=71  Identities=13%  Similarity=-0.035  Sum_probs=57.0

Q ss_pred             CCEEEEEcCCCchhHhhcc--CCeEEEEeCCC-------------------CCceEEEecCCCCCCCCCceeeEeecccc
Q psy10644        119 RLVIADLGCGEAKLAAELT--QHKVHSLDLVA-------------------LNERVTSCDMTRTPLKPYSVDVAVFCLSL  177 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l~--~~~v~giDls~-------------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l  177 (196)
                      ..+|||||||+|.+++.+.  +.+|+++|+++                   +++.++.+|.....   ++||+|++..  
T Consensus        73 ~~~VL~iG~G~G~~~~~ll~~~~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~Ii~d~--  147 (262)
T 2cmg_A           73 LKEVLIVDGFDLELAHQLFKYDTHIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLIFCLQ--  147 (262)
T ss_dssp             CCEEEEESSCCHHHHHHHTTSSCEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEEEESS--
T ss_pred             CCEEEEEeCCcCHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEEEECC--
Confidence            5799999999999988772  26999999987                   14667777876654   7899999863  


Q ss_pred             cccCHHHHHHHHHHhccCC
Q psy10644        178 MGTDLAACIKEANRILKLG  196 (196)
Q Consensus       178 h~~d~~~~l~e~~rvLkpg  196 (196)
                        .++..++++++++||||
T Consensus       148 --~dp~~~~~~~~~~L~pg  164 (262)
T 2cmg_A          148 --EPDIHRIDGLKRMLKED  164 (262)
T ss_dssp             --CCCHHHHHHHHTTEEEE
T ss_pred             --CChHHHHHHHHHhcCCC
Confidence              35566999999999986

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=98.83  E-value=5.2e-09  Score=85.73  Aligned_cols=78  Identities=14%  Similarity=0.005  Sum_probs=60.4

Q ss_pred             CCEEEEEcCCCchhHhhcc----CCeEEEEeCCC-------------------CCceEEEecCCC-CCCCCCceeeEeec
Q psy10644        119 RLVIADLGCGEAKLAAELT----QHKVHSLDLVA-------------------LNERVTSCDMTR-TPLKPYSVDVAVFC  174 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l~----~~~v~giDls~-------------------~~~~~~~~d~~~-lp~~~~sfD~Vi~~  174 (196)
                      ..+|||||||+|.++..+.    ..+|+++|+++                   +++.++.+|+.. ++..+++||+|++.
T Consensus        76 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~d  155 (275)
T 1iy9_A           76 PEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMVD  155 (275)
T ss_dssp             CCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEES
T ss_pred             CCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEEC
Confidence            5799999999999998882    35999999987                   256788888754 34446789999986


Q ss_pred             cccccc-----CHHHHHHHHHHhccCC
Q psy10644        175 LSLMGT-----DLAACIKEANRILKLG  196 (196)
Q Consensus       175 ~~lh~~-----d~~~~l~e~~rvLkpg  196 (196)
                      ...+..     ....++++++++||||
T Consensus       156 ~~~~~~~~~~l~~~~~~~~~~~~L~pg  182 (275)
T 1iy9_A          156 STEPVGPAVNLFTKGFYAGIAKALKED  182 (275)
T ss_dssp             CSSCCSCCCCCSTTHHHHHHHHHEEEE
T ss_pred             CCCCCCcchhhhHHHHHHHHHHhcCCC
Confidence            544321     1368999999999986

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=98.82  E-value=4.7e-09  Score=83.91  Aligned_cols=88  Identities=10%  Similarity=0.066  Sum_probs=65.0

Q ss_pred             HHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc----c-CCeEEEEeCCC----------------CCceEEEecCCCC-C
Q psy10644        105 DIIIKSIQERESKGRLVIADLGCGEAKLAAEL----T-QHKVHSLDLVA----------------LNERVTSCDMTRT-P  162 (196)
Q Consensus       105 ~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l----~-~~~v~giDls~----------------~~~~~~~~d~~~l-p  162 (196)
                      ..++..+.....  ..+|||||||+|..+..+    + +.+|+++|+++                .++.++.+|+.++ +
T Consensus        59 ~~~l~~l~~~~~--~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~  136 (237)
T 3c3y_A           59 GQLMSFVLKLVN--AKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALD  136 (237)
T ss_dssp             HHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHH
T ss_pred             HHHHHHHHHhhC--CCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHH
Confidence            345555444333  679999999999988777    2 67999999998                1477888887542 2


Q ss_pred             -C-----CCCceeeEeecccccccCHHHHHHHHHHhccCC
Q psy10644        163 -L-----KPYSVDVAVFCLSLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       163 -~-----~~~sfD~Vi~~~~lh~~d~~~~l~e~~rvLkpg  196 (196)
                       +     ++++||+|++...  ..+...+++++.++||||
T Consensus       137 ~l~~~~~~~~~fD~I~~d~~--~~~~~~~l~~~~~~L~pG  174 (237)
T 3c3y_A          137 NLLQGQESEGSYDFGFVDAD--KPNYIKYHERLMKLVKVG  174 (237)
T ss_dssp             HHHHSTTCTTCEEEEEECSC--GGGHHHHHHHHHHHEEEE
T ss_pred             HHHhccCCCCCcCEEEECCc--hHHHHHHHHHHHHhcCCC
Confidence             2     2578999987633  236789999999999986

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=98.82  E-value=6e-09  Score=88.86  Aligned_cols=78  Identities=19%  Similarity=0.177  Sum_probs=61.9

Q ss_pred             CCCCCEEEEEcCCCchhHhhc--cCC--eEEEEeCCC----------------CCceEEEecCCCCCCCCCceeeEeecc
Q psy10644        116 SKGRLVIADLGCGEAKLAAEL--TQH--KVHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAVFCL  175 (196)
Q Consensus       116 ~~~~~~ILDlGCG~G~~a~~l--~~~--~v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~  175 (196)
                      ..++.+|||+|||+|.++..+  .+.  +|+|+|+++                .++.+.++|+..+++++++||+|++..
T Consensus       215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~np  294 (373)
T 3tm4_A          215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNL  294 (373)
T ss_dssp             TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEEC
T ss_pred             cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEECC
Confidence            345789999999999998877  233  899999998                267999999999998889999999976


Q ss_pred             cccc---c-----C-HHHHHHHHHHhc
Q psy10644        176 SLMG---T-----D-LAACIKEANRIL  193 (196)
Q Consensus       176 ~lh~---~-----d-~~~~l~e~~rvL  193 (196)
                      .++.   .     + +..+++++.|+|
T Consensus       295 Pyg~r~~~~~~~~~ly~~~~~~l~r~l  321 (373)
T 3tm4_A          295 PYGLKIGKKSMIPDLYMKFFNELAKVL  321 (373)
T ss_dssp             CCC------CCHHHHHHHHHHHHHHHE
T ss_pred             CCCcccCcchhHHHHHHHHHHHHHHHc
Confidence            6421   1     1 367788888877

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=98.82  E-value=4.5e-09  Score=88.01  Aligned_cols=78  Identities=15%  Similarity=0.096  Sum_probs=59.4

Q ss_pred             CCEEEEEcCCCchhHhhcc----CCeEEEEeCCC-------------------CCceEEEecCCC-CCCCCCceeeEeec
Q psy10644        119 RLVIADLGCGEAKLAAELT----QHKVHSLDLVA-------------------LNERVTSCDMTR-TPLKPYSVDVAVFC  174 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l~----~~~v~giDls~-------------------~~~~~~~~d~~~-lp~~~~sfD~Vi~~  174 (196)
                      ..+|||||||+|.++..+.    ..+|+++|+++                   .++.++.+|+.. ++..+++||+|++.
T Consensus       117 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~d  196 (321)
T 2pt6_A          117 PKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIVD  196 (321)
T ss_dssp             CCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEEE
T ss_pred             CCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEEC
Confidence            5799999999999988882    45999999997                   146788888754 33346789999986


Q ss_pred             cccc-c-c-C--HHHHHHHHHHhccCC
Q psy10644        175 LSLM-G-T-D--LAACIKEANRILKLG  196 (196)
Q Consensus       175 ~~lh-~-~-d--~~~~l~e~~rvLkpg  196 (196)
                      ..-+ + . .  ...++++++++||||
T Consensus       197 ~~~p~~~~~~l~~~~~l~~~~~~Lkpg  223 (321)
T 2pt6_A          197 SSDPIGPAETLFNQNFYEKIYNALKPN  223 (321)
T ss_dssp             CCCSSSGGGGGSSHHHHHHHHHHEEEE
T ss_pred             CcCCCCcchhhhHHHHHHHHHHhcCCC
Confidence            5322 1 1 2  278999999999986

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=98.81  E-value=4.6e-09  Score=87.78  Aligned_cols=78  Identities=15%  Similarity=0.021  Sum_probs=56.3

Q ss_pred             CCEEEEEcCCCchhHhhcc----CCeEEEEeCCC-------------------CCceEEEecCCC-CCCCCCceeeEeec
Q psy10644        119 RLVIADLGCGEAKLAAELT----QHKVHSLDLVA-------------------LNERVTSCDMTR-TPLKPYSVDVAVFC  174 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l~----~~~v~giDls~-------------------~~~~~~~~d~~~-lp~~~~sfD~Vi~~  174 (196)
                      ..+|||||||+|.++..+.    ..+|+++|+++                   .++.++.+|+.. ++..+++||+|++.
T Consensus       109 ~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~d  188 (314)
T 2b2c_A          109 PKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIITD  188 (314)
T ss_dssp             CCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEEC
T ss_pred             CCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEEc
Confidence            5799999999999998882    35999999997                   135777777754 33356789999986


Q ss_pred             cccccc-C--H--HHHHHHHHHhccCC
Q psy10644        175 LSLMGT-D--L--AACIKEANRILKLG  196 (196)
Q Consensus       175 ~~lh~~-d--~--~~~l~e~~rvLkpg  196 (196)
                      ..-+.. .  .  ..++++++++||||
T Consensus       189 ~~~~~~~~~~l~t~~~l~~~~~~Lkpg  215 (314)
T 2b2c_A          189 SSDPVGPAESLFGQSYYELLRDALKED  215 (314)
T ss_dssp             CC-------------HHHHHHHHEEEE
T ss_pred             CCCCCCcchhhhHHHHHHHHHhhcCCC
Confidence            543321 1  1  68999999999986

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=98.77  E-value=1.6e-08  Score=88.25  Aligned_cols=82  Identities=18%  Similarity=0.302  Sum_probs=62.7

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc----cC-CeEEEEeCCC---------------CCceEEEecCCCCC--CCCCceeeEe
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL----TQ-HKVHSLDLVA---------------LNERVTSCDMTRTP--LKPYSVDVAV  172 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l----~~-~~v~giDls~---------------~~~~~~~~d~~~lp--~~~~sfD~Vi  172 (196)
                      .+.++.+|||+|||+|..+..+    .+ .+|+++|+++               .++.++.+|+..++  +++++||+|+
T Consensus       256 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl  335 (450)
T 2yxl_A          256 DPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVL  335 (450)
T ss_dssp             CCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEE
T ss_pred             CCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCCEEE
Confidence            3445789999999999987777    23 6999999998               36788889988776  5557899999


Q ss_pred             e---cc---ccc-ccCH----------------HHHHHHHHHhccCC
Q psy10644        173 F---CL---SLM-GTDL----------------AACIKEANRILKLG  196 (196)
Q Consensus       173 ~---~~---~lh-~~d~----------------~~~l~e~~rvLkpg  196 (196)
                      +   |.   +++ ..+.                ..+|.++.++||||
T Consensus       336 ~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpG  382 (450)
T 2yxl_A          336 LDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPG  382 (450)
T ss_dssp             EECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEE
T ss_pred             EcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            6   22   222 2222                67899999999986

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=98.76  E-value=2.6e-08  Score=80.12  Aligned_cols=62  Identities=16%  Similarity=0.135  Sum_probs=48.2

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC-------------CCceEEEecCCCCCCCC-CceeeEeecccc
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA-------------LNERVTSCDMTRTPLKP-YSVDVAVFCLSL  177 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~-------------~~~~~~~~d~~~lp~~~-~sfD~Vi~~~~l  177 (196)
                      ...++.+|||||||+|.++..+  .+.+|+|+|+++             .++.++.+|+..+++++ ..| .|+++...
T Consensus        27 ~~~~~~~VLDiG~G~G~lt~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~~-~vv~nlPy  104 (244)
T 1qam_A           27 RLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQSY-KIFGNIPY  104 (244)
T ss_dssp             CCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCCC-EEEEECCG
T ss_pred             CCCCCCEEEEEeCCchHHHHHHHHcCCeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCcccCCCe-EEEEeCCc
Confidence            3345789999999999999988  467999999997             36889999999888874 445 45554433

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=98.72  E-value=3.8e-08  Score=80.13  Aligned_cols=90  Identities=19%  Similarity=0.200  Sum_probs=64.8

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC--------------CCceEEEecCCCCCCCC
Q psy10644        104 VDIIIKSIQERESKGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA--------------LNERVTSCDMTRTPLKP  165 (196)
Q Consensus       104 ~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~--------------~~~~~~~~d~~~lp~~~  165 (196)
                      ++.+...+.... ....+|||||||+|-++..+    +..+|+++|+++              ....+.+.|...-+ +.
T Consensus       119 lD~fY~~i~~~i-~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~-p~  196 (281)
T 3lcv_B          119 LDEFYRELFRHL-PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDR-LD  196 (281)
T ss_dssp             HHHHHHHHGGGS-CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSC-CC
T ss_pred             HHHHHHHHHhcc-CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccC-CC
Confidence            444444433322 23679999999999998888    456999999999              34567777775533 56


Q ss_pred             CceeeEeecccccccC---HHHHHHHHHHhccCC
Q psy10644        166 YSVDVAVFCLSLMGTD---LAACIKEANRILKLG  196 (196)
Q Consensus       166 ~sfD~Vi~~~~lh~~d---~~~~l~e~~rvLkpg  196 (196)
                      +.||+|++..++|+.+   ....+ ++.+.|+|+
T Consensus       197 ~~~DvaL~lkti~~Le~q~kg~g~-~ll~aL~~~  229 (281)
T 3lcv_B          197 EPADVTLLLKTLPCLETQQRGSGW-EVIDIVNSP  229 (281)
T ss_dssp             SCCSEEEETTCHHHHHHHSTTHHH-HHHHHSSCS
T ss_pred             CCcchHHHHHHHHHhhhhhhHHHH-HHHHHhCCC
Confidence            7899999999997652   22455 888888875

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=98.70  E-value=4.5e-08  Score=84.85  Aligned_cols=82  Identities=16%  Similarity=0.212  Sum_probs=62.3

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC--------------CCceEEEecCCCCC--CCCCceeeEee-
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA--------------LNERVTSCDMTRTP--LKPYSVDVAVF-  173 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~--------------~~~~~~~~d~~~lp--~~~~sfD~Vi~-  173 (196)
                      .+.++.+|||+|||+|..+..+    .+.+|+++|+++              .++.++.+|+..++  +++++||+|++ 
T Consensus       243 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D  322 (429)
T 1sqg_A          243 APQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLD  322 (429)
T ss_dssp             CCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEE
T ss_pred             CCCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCEEEEe
Confidence            3455789999999999987777    336999999998              24678888988776  56689999996 


Q ss_pred             --ccc---cc-ccCH----------------HHHHHHHHHhccCC
Q psy10644        174 --CLS---LM-GTDL----------------AACIKEANRILKLG  196 (196)
Q Consensus       174 --~~~---lh-~~d~----------------~~~l~e~~rvLkpg  196 (196)
                        |..   ++ ..+.                ..++.++.++||||
T Consensus       323 ~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpG  367 (429)
T 1sqg_A          323 APCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTG  367 (429)
T ss_dssp             CCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEE
T ss_pred             CCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence              222   21 2222                47899999999986

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=98.69  E-value=1.1e-08  Score=81.83  Aligned_cols=77  Identities=16%  Similarity=0.073  Sum_probs=55.6

Q ss_pred             CCCEEEEEcCCCchhHhhc--c--CCeEEEEeCCC----------------CCceEEEecCCCCCCCCCceeeEeecccc
Q psy10644        118 GRLVIADLGCGEAKLAAEL--T--QHKVHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAVFCLSL  177 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l--~--~~~v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l  177 (196)
                      ++.+|||||||+|.++..+  .  ..+|+++|+++                .++.+..+|..+...+++.||+|+++.+.
T Consensus        21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaGmG  100 (230)
T 3lec_A           21 KGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICGMG  100 (230)
T ss_dssp             TTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEEC
T ss_pred             CCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeCCc
Confidence            4689999999999998888  2  23899999998                25889999987654444479998865432


Q ss_pred             cccCHHHHHHHHHHhccC
Q psy10644        178 MGTDLAACIKEANRILKL  195 (196)
Q Consensus       178 h~~d~~~~l~e~~rvLkp  195 (196)
                       +.-...++.++.+.|++
T Consensus       101 -g~lI~~IL~~~~~~l~~  117 (230)
T 3lec_A          101 -GRLIADILNNDIDKLQH  117 (230)
T ss_dssp             -HHHHHHHHHHTGGGGTT
T ss_pred             -hHHHHHHHHHHHHHhCc
Confidence             11245566666666665

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.69  E-value=1.3e-07  Score=77.22  Aligned_cols=96  Identities=16%  Similarity=0.081  Sum_probs=66.4

Q ss_pred             CChHHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhcc---C-CeEEEEeCCC-------C------CceEEEecCCCCCC
Q psy10644        101 INPVDIIIKSIQERESKGRLVIADLGCGEAKLAAELT---Q-HKVHSLDLVA-------L------NERVTSCDMTRTPL  163 (196)
Q Consensus       101 ~~~~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l~---~-~~v~giDls~-------~------~~~~~~~d~~~lp~  163 (196)
                      ....-.+++...+....++.+|||||||+|.|++.+.   + ..|+|+|+.-       .      ++.....+++...+
T Consensus        57 SRaA~KL~ei~ek~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~l  136 (277)
T 3evf_A           57 SRGTAKLRWFHERGYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHRL  136 (277)
T ss_dssp             STHHHHHHHHHHTTSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTTS
T ss_pred             ccHHHHHHHHHHhCCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccccCcCCCCeEEEeccceehhc
Confidence            3344455555555445567899999999999999762   2 2677887762       1      34445666655677


Q ss_pred             CCCceeeEeeccccc----ccCHH---HHHHHHHHhccCC
Q psy10644        164 KPYSVDVAVFCLSLM----GTDLA---ACIKEANRILKLG  196 (196)
Q Consensus       164 ~~~sfD~Vi~~~~lh----~~d~~---~~l~e~~rvLkpg  196 (196)
                      +++.||+|++-.+.+    ..|..   .+|..+.++||||
T Consensus       137 ~~~~~DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG  176 (277)
T 3evf_A          137 EPVKCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACG  176 (277)
T ss_dssp             CCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCCCccEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCC
Confidence            888999999987665    33332   2468889999997

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=98.67  E-value=1.3e-08  Score=82.13  Aligned_cols=77  Identities=19%  Similarity=0.071  Sum_probs=54.9

Q ss_pred             CCCEEEEEcCCCchhHhhc--c--CCeEEEEeCCC----------------CCceEEEecCCCCCCCCCceeeEeecccc
Q psy10644        118 GRLVIADLGCGEAKLAAEL--T--QHKVHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAVFCLSL  177 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l--~--~~~v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l  177 (196)
                      ++.+|||||||+|.++..+  .  ..+|+++|+++                .++.+..+|..+...+...||+|+++.+.
T Consensus        21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~IviagmG  100 (244)
T 3gnl_A           21 KNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAGMG  100 (244)
T ss_dssp             SSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEEC
T ss_pred             CCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeCCc
Confidence            4679999999999998888  2  23899999998                24789999986644333469998874331


Q ss_pred             cccCHHHHHHHHHHhccC
Q psy10644        178 MGTDLAACIKEANRILKL  195 (196)
Q Consensus       178 h~~d~~~~l~e~~rvLkp  195 (196)
                       ..-...+|.++.+.|++
T Consensus       101 -g~lI~~IL~~~~~~L~~  117 (244)
T 3gnl_A          101 -GTLIRTILEEGAAKLAG  117 (244)
T ss_dssp             -HHHHHHHHHHTGGGGTT
T ss_pred             -hHHHHHHHHHHHHHhCC
Confidence             11245566666666665

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=98.67  E-value=3.7e-08  Score=80.77  Aligned_cols=77  Identities=12%  Similarity=-0.016  Sum_probs=57.6

Q ss_pred             CCEEEEEcCCCchhHhhcc---CCeEEEEeCCC-------------------------CCceEEEecCCC-CCCCCCcee
Q psy10644        119 RLVIADLGCGEAKLAAELT---QHKVHSLDLVA-------------------------LNERVTSCDMTR-TPLKPYSVD  169 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l~---~~~v~giDls~-------------------------~~~~~~~~d~~~-lp~~~~sfD  169 (196)
                      +.+|||||||+|.++..+.   ..+|+++|+++                         .++.++.+|+.. ++. +++||
T Consensus        76 ~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~~fD  154 (281)
T 1mjf_A           76 PKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRGFD  154 (281)
T ss_dssp             CCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCCEE
T ss_pred             CCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcc-cCCee
Confidence            5799999999999988883   35999999986                         135677777643 223 67899


Q ss_pred             eEeeccccccc---C--HHHHHHHHHHhccCC
Q psy10644        170 VAVFCLSLMGT---D--LAACIKEANRILKLG  196 (196)
Q Consensus       170 ~Vi~~~~lh~~---d--~~~~l~e~~rvLkpg  196 (196)
                      +|++....+..   .  ...++++++++||||
T Consensus       155 ~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pg  186 (281)
T 1mjf_A          155 VIIADSTDPVGPAKVLFSEEFYRYVYDALNNP  186 (281)
T ss_dssp             EEEEECCCCC-----TTSHHHHHHHHHHEEEE
T ss_pred             EEEECCCCCCCcchhhhHHHHHHHHHHhcCCC
Confidence            99986654321   1  378999999999986

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=98.66  E-value=1.9e-08  Score=80.28  Aligned_cols=77  Identities=18%  Similarity=0.080  Sum_probs=56.4

Q ss_pred             CCCEEEEEcCCCchhHhhc--c--CCeEEEEeCCC----------------CCceEEEecCC-CCCCCCCceeeEeeccc
Q psy10644        118 GRLVIADLGCGEAKLAAEL--T--QHKVHSLDLVA----------------LNERVTSCDMT-RTPLKPYSVDVAVFCLS  176 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l--~--~~~v~giDls~----------------~~~~~~~~d~~-~lp~~~~sfD~Vi~~~~  176 (196)
                      ++.+|||||||+|.++..+  .  ..+|+++|+++                .++.+..+|.. .++. .+.||+|+.+.+
T Consensus        15 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~-~~~~D~IviaG~   93 (225)
T 3kr9_A           15 QGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEE-TDQVSVITIAGM   93 (225)
T ss_dssp             TTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG-GGCCCEEEEEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhccc-CcCCCEEEEcCC
Confidence            4679999999999998888  2  34899999998                25788999974 4432 226999887543


Q ss_pred             ccccCHHHHHHHHHHhccCC
Q psy10644        177 LMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       177 lh~~d~~~~l~e~~rvLkpg  196 (196)
                      - +.-...++.++.+.|+++
T Consensus        94 G-g~~i~~Il~~~~~~L~~~  112 (225)
T 3kr9_A           94 G-GRLIARILEEGLGKLANV  112 (225)
T ss_dssp             C-HHHHHHHHHHTGGGCTTC
T ss_pred             C-hHHHHHHHHHHHHHhCCC
Confidence            1 112567788888888764

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=98.65  E-value=5.7e-08  Score=85.55  Aligned_cols=79  Identities=16%  Similarity=0.186  Sum_probs=60.6

Q ss_pred             CCCEEEEEcCCCchhHhhc----c-CCeEEEEeCCC---------------CCceEEEecCCCCCC-CCCceeeEee---
Q psy10644        118 GRLVIADLGCGEAKLAAEL----T-QHKVHSLDLVA---------------LNERVTSCDMTRTPL-KPYSVDVAVF---  173 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l----~-~~~v~giDls~---------------~~~~~~~~d~~~lp~-~~~sfD~Vi~---  173 (196)
                      ++.+|||+|||+|..+..+    . ...|+++|+++               .++.++.+|+..++. .+++||+|++   
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~P  196 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAP  196 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECC
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCC
Confidence            5889999999999987776    1 36999999998               367888889887653 4678999998   


Q ss_pred             cccc----cccC----------------HHHHHHHHHHhccCC
Q psy10644        174 CLSL----MGTD----------------LAACIKEANRILKLG  196 (196)
Q Consensus       174 ~~~l----h~~d----------------~~~~l~e~~rvLkpg  196 (196)
                      |...    +..+                ...+|.++.++||||
T Consensus       197 cSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpG  239 (479)
T 2frx_A          197 CSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG  239 (479)
T ss_dssp             CCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEE
T ss_pred             cCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCC
Confidence            3222    1111                246899999999986

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.65  E-value=6.3e-08  Score=78.57  Aligned_cols=63  Identities=13%  Similarity=0.128  Sum_probs=50.1

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC-------------CCceEEEecCCCCCCCC----CceeeEeecc
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA-------------LNERVTSCDMTRTPLKP----YSVDVAVFCL  175 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~-------------~~~~~~~~d~~~lp~~~----~sfD~Vi~~~  175 (196)
                      ...++.+|||||||+|.++..|  .+.+|+++|+++             .++.++.+|+..+++++    +.|| |+++.
T Consensus        26 ~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~-vv~Nl  104 (255)
T 3tqs_A           26 HPQKTDTLVEIGPGRGALTDYLLTECDNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFSSVKTDKPLR-VVGNL  104 (255)
T ss_dssp             CCCTTCEEEEECCTTTTTHHHHTTTSSEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCCGGGSCCSSCEE-EEEEC
T ss_pred             CCCCcCEEEEEcccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCCHHHhccCCCeE-EEecC
Confidence            4455789999999999999998  456999999998             37899999999887653    5688 66665


Q ss_pred             ccc
Q psy10644        176 SLM  178 (196)
Q Consensus       176 ~lh  178 (196)
                      -.+
T Consensus       105 PY~  107 (255)
T 3tqs_A          105 PYN  107 (255)
T ss_dssp             CHH
T ss_pred             Ccc
Confidence            443

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=98.64  E-value=6.6e-08  Score=79.20  Aligned_cols=65  Identities=17%  Similarity=0.114  Sum_probs=52.9

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC------------CCceEEEecCCCCCCCCC-ceeeEeecccccc
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA------------LNERVTSCDMTRTPLKPY-SVDVAVFCLSLMG  179 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~------------~~~~~~~~d~~~lp~~~~-sfD~Vi~~~~lh~  179 (196)
                      ...++ +|||||||+|.++..|  .+.+|+++|+++            .++.++.+|+..+++++. .+|.|+++.-.+.
T Consensus        44 ~~~~~-~VLEIG~G~G~lt~~L~~~~~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~~~~~~~iv~NlPy~i  122 (271)
T 3fut_A           44 RPFTG-PVFEVGPGLGALTRALLEAGAEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEEVPQGSLLVANLPYHI  122 (271)
T ss_dssp             CCCCS-CEEEECCTTSHHHHHHHHTTCCEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGGGSCTTEEEEEEECSSC
T ss_pred             CCCCC-eEEEEeCchHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChhhccCccEEEecCcccc
Confidence            44457 9999999999999998  567999999998            368899999988887643 6899888876654


Q ss_pred             c
Q psy10644        180 T  180 (196)
Q Consensus       180 ~  180 (196)
                      .
T Consensus       123 s  123 (271)
T 3fut_A          123 A  123 (271)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=98.63  E-value=1.7e-07  Score=80.20  Aligned_cols=56  Identities=5%  Similarity=-0.016  Sum_probs=45.7

Q ss_pred             CCCEEEEEcCCCchhHhhcc-----CCeEEEEeCCC------CCceEEEecCCCCCCCCCceeeEeec
Q psy10644        118 GRLVIADLGCGEAKLAAELT-----QHKVHSLDLVA------LNERVTSCDMTRTPLKPYSVDVAVFC  174 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l~-----~~~v~giDls~------~~~~~~~~d~~~lp~~~~sfD~Vi~~  174 (196)
                      ++.+|||+|||+|.++..+.     ..+|+|+|+++      .++.++.+|+...+ +.+.||+|+++
T Consensus        39 ~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a~~~~~~~~D~~~~~-~~~~fD~Ii~N  105 (421)
T 2ih2_A           39 RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPPWAEGILADFLLWE-PGEAFDLILGN  105 (421)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCTTEEEEESCGGGCC-CSSCEEEEEEC
T ss_pred             CCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhCCCCcEEeCChhhcC-ccCCCCEEEEC
Confidence            35699999999999987772     46999999999      35778899987754 35789999995

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=98.62  E-value=1.7e-08  Score=86.52  Aligned_cols=79  Identities=15%  Similarity=0.110  Sum_probs=59.5

Q ss_pred             CCCEEEEEcCCCchhHhhc-c-CC-eEEEEeCCC---------------C--CceEEEecCCC-CC-C--CCCceeeEee
Q psy10644        118 GRLVIADLGCGEAKLAAEL-T-QH-KVHSLDLVA---------------L--NERVTSCDMTR-TP-L--KPYSVDVAVF  173 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l-~-~~-~v~giDls~---------------~--~~~~~~~d~~~-lp-~--~~~sfD~Vi~  173 (196)
                      ++.+|||+|||+|.++..+ . +. +|+|+|+|+               .  ++.++++|+.. ++ +  ...+||+|++
T Consensus       212 ~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii~  291 (385)
T 2b78_A          212 AGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIII  291 (385)
T ss_dssp             BTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEEE
Confidence            3679999999999999888 2 44 899999999               2  67899999865 22 1  2458999998


Q ss_pred             cccc---------ccc-CHHHHHHHHHHhccCC
Q psy10644        174 CLSL---------MGT-DLAACIKEANRILKLG  196 (196)
Q Consensus       174 ~~~l---------h~~-d~~~~l~e~~rvLkpg  196 (196)
                      .--.         ... ++..++.++.++|+||
T Consensus       292 DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pg  324 (385)
T 2b78_A          292 DPPSFARNKKEVFSVSKDYHKLIRQGLEILSEN  324 (385)
T ss_dssp             CCCCC-----CCCCHHHHHHHHHHHHHHTEEEE
T ss_pred             CCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCC
Confidence            4221         122 5667888899999986

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=98.60  E-value=1.4e-07  Score=81.99  Aligned_cols=60  Identities=17%  Similarity=0.182  Sum_probs=49.1

Q ss_pred             CCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC---------------CCceEEEecCCC----CCCCCCceeeEeec
Q psy10644        116 SKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA---------------LNERVTSCDMTR----TPLKPYSVDVAVFC  174 (196)
Q Consensus       116 ~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~---------------~~~~~~~~d~~~----lp~~~~sfD~Vi~~  174 (196)
                      ..++.+|||+|||+|.++..+  ...+|+|+|+|+               .++.++.+|+..    +++++++||+|++.
T Consensus       284 ~~~~~~VLDlgcG~G~~~~~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv~d  363 (433)
T 1uwv_A          284 VQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLD  363 (433)
T ss_dssp             CCTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEEC
T ss_pred             CCCCCEEEECCCCCCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhcCCCCEEEEC
Confidence            345679999999999999988  356999999998               368899999876    34567789999975


Q ss_pred             c
Q psy10644        175 L  175 (196)
Q Consensus       175 ~  175 (196)
                      -
T Consensus       364 P  364 (433)
T 1uwv_A          364 P  364 (433)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.60  E-value=4.4e-08  Score=90.01  Aligned_cols=79  Identities=14%  Similarity=0.095  Sum_probs=62.1

Q ss_pred             CCCEEEEEcCCCchhHhhc--cCC-eEEEEeCCC---------------C--CceEEEecCCC-CCCCCCceeeEeecc-
Q psy10644        118 GRLVIADLGCGEAKLAAEL--TQH-KVHSLDLVA---------------L--NERVTSCDMTR-TPLKPYSVDVAVFCL-  175 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l--~~~-~v~giDls~---------------~--~~~~~~~d~~~-lp~~~~sfD~Vi~~~-  175 (196)
                      ++.+|||+|||+|.++..+  .+. +|+++|+|+               .  ++.++++|+.. ++...++||+|++.- 
T Consensus       539 ~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DPP  618 (703)
T 3v97_A          539 KGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDPP  618 (703)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECCC
T ss_pred             CCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECCc
Confidence            3789999999999998887  344 699999998               1  57889999865 444567899999843 


Q ss_pred             ----------ccccc-CHHHHHHHHHHhccCC
Q psy10644        176 ----------SLMGT-DLAACIKEANRILKLG  196 (196)
Q Consensus       176 ----------~lh~~-d~~~~l~e~~rvLkpg  196 (196)
                                ++... ++..++.++.++||||
T Consensus       619 ~f~~~~~~~~~~~~~~~~~~ll~~a~~~Lkpg  650 (703)
T 3v97_A          619 TFSNSKRMEDAFDVQRDHLALMKDLKRLLRAG  650 (703)
T ss_dssp             SBC-------CCBHHHHHHHHHHHHHHHEEEE
T ss_pred             cccCCccchhHHHHHHHHHHHHHHHHHhcCCC
Confidence                      22222 7788999999999986

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=98.58  E-value=1.1e-07  Score=79.93  Aligned_cols=78  Identities=23%  Similarity=0.196  Sum_probs=59.5

Q ss_pred             CCCEEEEEcCCCchhHhhc----cC-----CeEEEEeCCC--------------CCceEEEecCCCCCCCCCceeeEeec
Q psy10644        118 GRLVIADLGCGEAKLAAEL----TQ-----HKVHSLDLVA--------------LNERVTSCDMTRTPLKPYSVDVAVFC  174 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l----~~-----~~v~giDls~--------------~~~~~~~~d~~~lp~~~~sfD~Vi~~  174 (196)
                      ++.+|||+|||+|.++..+    ..     .+|+|+|+++              .++.+..+|... +.+.+.||+|+++
T Consensus       130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~-~~~~~~fD~Ii~N  208 (344)
T 2f8l_A          130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLA-NLLVDPVDVVISD  208 (344)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTS-CCCCCCEEEEEEE
T ss_pred             CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCC-ccccCCccEEEEC
Confidence            4679999999999997666    22     6899999998              256788888755 3346789999998


Q ss_pred             cccccc-C-----------------H-HHHHHHHHHhccCC
Q psy10644        175 LSLMGT-D-----------------L-AACIKEANRILKLG  196 (196)
Q Consensus       175 ~~lh~~-d-----------------~-~~~l~e~~rvLkpg  196 (196)
                      -.++.. .                 . ..++.++.+.||||
T Consensus       209 PPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~g  249 (344)
T 2f8l_A          209 LPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPG  249 (344)
T ss_dssp             CCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEE
T ss_pred             CCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCC
Confidence            776321 1                 1 25899999999985

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=98.58  E-value=4e-08  Score=84.46  Aligned_cols=79  Identities=13%  Similarity=-0.012  Sum_probs=58.3

Q ss_pred             CCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC--------------CCceEEEecCCCC-CCCCCceeeEeeccccc--
Q psy10644        118 GRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA--------------LNERVTSCDMTRT-PLKPYSVDVAVFCLSLM--  178 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~--------------~~~~~~~~d~~~l-p~~~~sfD~Vi~~~~lh--  178 (196)
                      ++.+|||+|||+|.++..+  .+..|+++|+|+              ....+.++|+..+ +...+.||+|++....+  
T Consensus       214 ~g~~VLDlg~GtG~~sl~~a~~ga~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f~~  293 (393)
T 4dmg_A          214 PGERVLDVYSYVGGFALRAARKGAYALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPTLVK  293 (393)
T ss_dssp             TTCEEEEESCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCCCCS
T ss_pred             CCCeEEEcccchhHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCcCCC
Confidence            4789999999999998888  466799999999              1235777887553 22133499999854321  


Q ss_pred             -------c-cCHHHHHHHHHHhccCC
Q psy10644        179 -------G-TDLAACIKEANRILKLG  196 (196)
Q Consensus       179 -------~-~d~~~~l~e~~rvLkpg  196 (196)
                             . .++..++.++.++||||
T Consensus       294 ~~~~~~~~~~~~~~ll~~a~~~LkpG  319 (393)
T 4dmg_A          294 RPEELPAMKRHLVDLVREALRLLAEE  319 (393)
T ss_dssp             SGGGHHHHHHHHHHHHHHHHHTEEEE
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence                   1 15678899999999986

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=98.58  E-value=6e-08  Score=79.73  Aligned_cols=76  Identities=18%  Similarity=0.127  Sum_probs=59.0

Q ss_pred             CCCCEEEEEcCCCchhHhhc---cCCeEEEEeCCC----------------CCceEEEecCCCCCCCCCceeeEeecccc
Q psy10644        117 KGRLVIADLGCGEAKLAAEL---TQHKVHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAVFCLSL  177 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l---~~~~v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l  177 (196)
                      +++.+|||+|||+|.++..+   ...+|+++|+++                ..+.++.+|...++. .+.||.|++..-.
T Consensus       124 ~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~-~~~~D~Vi~~~p~  202 (278)
T 3k6r_A          124 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYVV  202 (278)
T ss_dssp             CTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCCS
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhcc-ccCCCEEEECCCC
Confidence            34889999999999998776   346999999999                357888899887753 5789999876432


Q ss_pred             cccCHHHHHHHHHHhccCC
Q psy10644        178 MGTDLAACIKEANRILKLG  196 (196)
Q Consensus       178 h~~d~~~~l~e~~rvLkpg  196 (196)
                         ....++..+.++||+|
T Consensus       203 ---~~~~~l~~a~~~lk~g  218 (278)
T 3k6r_A          203 ---RTHEFIPKALSIAKDG  218 (278)
T ss_dssp             ---SGGGGHHHHHHHEEEE
T ss_pred             ---cHHHHHHHHHHHcCCC
Confidence               2346777888888875

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=98.56  E-value=1.6e-08  Score=86.63  Aligned_cols=79  Identities=13%  Similarity=-0.005  Sum_probs=61.1

Q ss_pred             CCCEEEEEcCCCchhHhhc--cC-CeEEEEeCCC---------------C-CceEEEecCCCCCC----CCCceeeEeec
Q psy10644        118 GRLVIADLGCGEAKLAAEL--TQ-HKVHSLDLVA---------------L-NERVTSCDMTRTPL----KPYSVDVAVFC  174 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l--~~-~~v~giDls~---------------~-~~~~~~~d~~~lp~----~~~sfD~Vi~~  174 (196)
                      ++.+|||+|||+|.++..+  .+ .+|+|+|+++               . ++.++.+|+..+..    +.++||+|++.
T Consensus       217 ~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~d  296 (396)
T 2as0_A          217 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLD  296 (396)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEEC
Confidence            4789999999999998888  33 3899999998               1 67889999865421    25789999985


Q ss_pred             ccc---------cc-cCHHHHHHHHHHhccCC
Q psy10644        175 LSL---------MG-TDLAACIKEANRILKLG  196 (196)
Q Consensus       175 ~~l---------h~-~d~~~~l~e~~rvLkpg  196 (196)
                      .-.         +. .+...++.++.++||||
T Consensus       297 pP~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg  328 (396)
T 2as0_A          297 PPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDG  328 (396)
T ss_dssp             CCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEE
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            322         12 36778999999999986

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=98.56  E-value=1.4e-08  Score=86.72  Aligned_cols=79  Identities=19%  Similarity=0.054  Sum_probs=60.8

Q ss_pred             CCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC---------------CCceEEEecCCCCCC----CCCceeeEeeccc
Q psy10644        118 GRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA---------------LNERVTSCDMTRTPL----KPYSVDVAVFCLS  176 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~---------------~~~~~~~~d~~~lp~----~~~sfD~Vi~~~~  176 (196)
                      ++.+|||+|||+|.++..+  ...+|+|+|+++               .++.++.+|+..+..    ..++||+|++.--
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dpP  288 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDPP  288 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCC
T ss_pred             CCCeEEEeeeccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEECCC
Confidence            4679999999999998888  345899999998               247889999865421    2578999998432


Q ss_pred             c---------cc-cCHHHHHHHHHHhccCC
Q psy10644        177 L---------MG-TDLAACIKEANRILKLG  196 (196)
Q Consensus       177 l---------h~-~d~~~~l~e~~rvLkpg  196 (196)
                      .         .. .+...++.++.++||||
T Consensus       289 ~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg  318 (382)
T 1wxx_A          289 AFAKGKKDVERAYRAYKEVNLRAIKLLKEG  318 (382)
T ss_dssp             CSCCSTTSHHHHHHHHHHHHHHHHHTEEEE
T ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhcCCC
Confidence            2         11 25678999999999986

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=98.54  E-value=9.1e-08  Score=80.41  Aligned_cols=73  Identities=15%  Similarity=0.146  Sum_probs=57.7

Q ss_pred             CCCEEEEEcCCCchhHhhc-cCCeEEEEeCCC----------------CCceEEEecCCCCCCCCCceeeEeeccccccc
Q psy10644        118 GRLVIADLGCGEAKLAAEL-TQHKVHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAVFCLSLMGT  180 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l-~~~~v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~~  180 (196)
                      ++.+|||+|||+|.++... .+.+|+|+|+++                .++.++.+|+..+.   +.||+|++....+  
T Consensus       195 ~~~~VLDlg~G~G~~~l~a~~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~---~~fD~Vi~dpP~~--  269 (336)
T 2yx1_A          195 LNDVVVDMFAGVGPFSIACKNAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD---VKGNRVIMNLPKF--  269 (336)
T ss_dssp             TTCEEEETTCTTSHHHHHTTTSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC---CCEEEEEECCTTT--
T ss_pred             CCCEEEEccCccCHHHHhccCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc---CCCcEEEECCcHh--
Confidence            4789999999999997773 245899999998                25889999987765   7899999853222  


Q ss_pred             CHHHHHHHHHHhccCC
Q psy10644        181 DLAACIKEANRILKLG  196 (196)
Q Consensus       181 d~~~~l~e~~rvLkpg  196 (196)
                       ...++.++.++|+||
T Consensus       270 -~~~~l~~~~~~L~~g  284 (336)
T 2yx1_A          270 -AHKFIDKALDIVEEG  284 (336)
T ss_dssp             -GGGGHHHHHHHEEEE
T ss_pred             -HHHHHHHHHHHcCCC
Confidence             237888899999875

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.52  E-value=4.9e-07  Score=81.92  Aligned_cols=119  Identities=19%  Similarity=0.259  Sum_probs=81.4

Q ss_pred             ccCCChHHHHHHhhhCHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHhh-cCCCCCEEEEEcCCCchhHhhc------cC
Q psy10644         66 LYTSKSEESKDFFTEDRESFEAYHEGFKKQVTQWPINPVDIIIKSIQER-ESKGRLVIADLGCGEAKLAAEL------TQ  138 (196)
Q Consensus        66 ~y~~~~~~~~~~~~~~~~~f~~y~~~y~~~~~~w~~~~~~~~~~~l~~~-~~~~~~~ILDlGCG~G~~a~~l------~~  138 (196)
                      +..+-...-.+.|.+++..|+.|...-.+.+           .+.+... ...+...|||||||+|-+....      .+
T Consensus       315 l~dnL~s~tYevFEkD~vKy~~Ye~AI~~Al-----------~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~  383 (637)
T 4gqb_A          315 LMDNLESQTYEVFEKDPIKYSQYQQAIYKCL-----------LDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQAD  383 (637)
T ss_dssp             TTSCCCHHHHHHHTTCHHHHHHHHHHHHHHH-----------HHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTT
T ss_pred             hhhhhhhhhhhhhcCChhhHHHHHHHHHHHH-----------HHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcC
Confidence            3444566778888899998888876553322           2222111 1223457999999999883333      12


Q ss_pred             C--eEEEEeCCC---------------CCceEEEecCCCCCCCCCceeeEeeccc---ccccCHHHHHHHHHHhccCC
Q psy10644        139 H--KVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDVAVFCLS---LMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       139 ~--~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~---lh~~d~~~~l~e~~rvLkpg  196 (196)
                      .  +|++++-++               ..+.++.+|++++.+| +.+|+||+-..   +.+.-...++....|.||||
T Consensus       384 ~~vkVyAVEknp~A~~a~~~v~~N~~~dkVtVI~gd~eev~LP-EKVDIIVSEwMG~fLl~E~mlevL~Ardr~LKPg  460 (637)
T 4gqb_A          384 RRIKLYAVEKNPNAVVTLENWQFEEWGSQVTVVSSDMREWVAP-EKADIIVSELLGSFADNELSPECLDGAQHFLKDD  460 (637)
T ss_dssp             CEEEEEEEESCHHHHHHHHHHHHHTTGGGEEEEESCTTTCCCS-SCEEEEECCCCBTTBGGGCHHHHHHHHGGGEEEE
T ss_pred             CCcEEEEEECCHHHHHHHHHHHhccCCCeEEEEeCcceeccCC-cccCEEEEEcCcccccccCCHHHHHHHHHhcCCC
Confidence            2  789999998               4689999999998876 58999997432   22234557888888899986

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=98.48  E-value=7.2e-08  Score=84.39  Aligned_cols=81  Identities=16%  Similarity=0.065  Sum_probs=59.2

Q ss_pred             CCCCCEEEEEcCCCchhHhhc----c-CCeEEEEeCCC---------------CCceEEEecCCCCC-CCCCceeeEeec
Q psy10644        116 SKGRLVIADLGCGEAKLAAEL----T-QHKVHSLDLVA---------------LNERVTSCDMTRTP-LKPYSVDVAVFC  174 (196)
Q Consensus       116 ~~~~~~ILDlGCG~G~~a~~l----~-~~~v~giDls~---------------~~~~~~~~d~~~lp-~~~~sfD~Vi~~  174 (196)
                      +.++.+|||+|||+|..+..+    . ...|+++|+++               .++.++.+|+..++ ..++.||+|++.
T Consensus       103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~D  182 (456)
T 3m4x_A          103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVD  182 (456)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEE
T ss_pred             CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEEC
Confidence            445889999999999887666    2 35999999998               35777788876654 235789999973


Q ss_pred             c---cc-c---ccC----------------HHHHHHHHHHhccCC
Q psy10644        175 L---SL-M---GTD----------------LAACIKEANRILKLG  196 (196)
Q Consensus       175 ~---~l-h---~~d----------------~~~~l~e~~rvLkpg  196 (196)
                      .   .+ .   ..+                ...+|.++.++||||
T Consensus       183 aPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpG  227 (456)
T 3m4x_A          183 APCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNK  227 (456)
T ss_dssp             CCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEE
T ss_pred             CCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            2   21 1   111                227899999999986

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=98.48  E-value=6e-07  Score=76.32  Aligned_cols=75  Identities=15%  Similarity=-0.044  Sum_probs=59.3

Q ss_pred             CCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC--------CCceEEEecCCCCCCCCCceeeEeecccccccCHHHH
Q psy10644        116 SKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA--------LNERVTSCDMTRTPLKPYSVDVAVFCLSLMGTDLAAC  185 (196)
Q Consensus       116 ~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~--------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~~d~~~~  185 (196)
                      ..+++++|||||.+|.|+..+  .+..|++||+.+        +++.++++|...+..+.+.||+|+|-.+..   +...
T Consensus       209 l~~G~~vlDLGAaPGGWT~~l~~rg~~V~aVD~~~l~~~l~~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~~---p~~~  285 (375)
T 4auk_A          209 LANGMWAVDLGACPGGWTYQLVKRNMWVYSVDNGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMVEK---PAKV  285 (375)
T ss_dssp             SCTTCEEEEETCTTCHHHHHHHHTTCEEEEECSSCCCHHHHTTTCEEEECSCTTTCCCCSSCEEEEEECCSSC---HHHH
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHCCCEEEEEEhhhcChhhccCCCeEEEeCccccccCCCCCcCEEEEcCCCC---hHHh
Confidence            356899999999999999999  677999999887        578999999888777778899999877653   3444


Q ss_pred             HHHHHHhc
Q psy10644        186 IKEANRIL  193 (196)
Q Consensus       186 l~e~~rvL  193 (196)
                      +.-+.++|
T Consensus       286 ~~l~~~wl  293 (375)
T 4auk_A          286 AALMAQWL  293 (375)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            44444443

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=98.47  E-value=5.4e-08  Score=85.36  Aligned_cols=81  Identities=15%  Similarity=0.127  Sum_probs=59.1

Q ss_pred             CCCCCEEEEEcCCCchhHhhc----c-CCeEEEEeCCC--------------CCceEEEecCCCCC-CCCCceeeEee--
Q psy10644        116 SKGRLVIADLGCGEAKLAAEL----T-QHKVHSLDLVA--------------LNERVTSCDMTRTP-LKPYSVDVAVF--  173 (196)
Q Consensus       116 ~~~~~~ILDlGCG~G~~a~~l----~-~~~v~giDls~--------------~~~~~~~~d~~~lp-~~~~sfD~Vi~--  173 (196)
                      +.++.+|||+|||+|..+..+    . ...|+++|+++              ..+.++.+|+..++ ..+++||+|++  
T Consensus        99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~Da~~l~~~~~~~FD~Il~D~  178 (464)
T 3m6w_A           99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAFGTYFHRVLLDA  178 (464)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCCCEEECSCHHHHHHHHCSCEEEEEEEC
T ss_pred             cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCeEEEEECCHHHhhhhccccCCEEEECC
Confidence            445889999999999887777    2 35899999998              12677778876654 34678999996  


Q ss_pred             -ccc---c-cccC----------------HHHHHHHHHHhccCC
Q psy10644        174 -CLS---L-MGTD----------------LAACIKEANRILKLG  196 (196)
Q Consensus       174 -~~~---l-h~~d----------------~~~~l~e~~rvLkpg  196 (196)
                       |..   + +..+                ...+|.++.++||||
T Consensus       179 PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpG  222 (464)
T 3m6w_A          179 PCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPG  222 (464)
T ss_dssp             CCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEE
T ss_pred             CcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence             211   1 1111                267899999999986

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=98.46  E-value=6.6e-08  Score=82.88  Aligned_cols=79  Identities=15%  Similarity=0.026  Sum_probs=60.3

Q ss_pred             CCCEEEEEcCCCchhHhhc--cC-CeEEEEeCCC--------------C---CceEEEecCCCCCC----CCCceeeEee
Q psy10644        118 GRLVIADLGCGEAKLAAEL--TQ-HKVHSLDLVA--------------L---NERVTSCDMTRTPL----KPYSVDVAVF  173 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l--~~-~~v~giDls~--------------~---~~~~~~~d~~~lp~----~~~sfD~Vi~  173 (196)
                      ++.+|||+|||+|.++..+  .+ .+|+|+|+++              .   ++.++.+|+..+..    ....||+|++
T Consensus       220 ~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii~  299 (396)
T 3c0k_A          220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM  299 (396)
T ss_dssp             TTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEEE
Confidence            4779999999999998888  33 4899999997              2   46788888765421    1468999998


Q ss_pred             cccc---------cc-cCHHHHHHHHHHhccCC
Q psy10644        174 CLSL---------MG-TDLAACIKEANRILKLG  196 (196)
Q Consensus       174 ~~~l---------h~-~d~~~~l~e~~rvLkpg  196 (196)
                      .--.         .. .+...++.++.++||||
T Consensus       300 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg  332 (396)
T 3c0k_A          300 DPPKFVENKSQLMGACRGYKDINMLAIQLLNEG  332 (396)
T ss_dssp             CCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEE
T ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCC
Confidence            6322         12 36778999999999986

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.44  E-value=4.8e-07  Score=67.27  Aligned_cols=83  Identities=8%  Similarity=0.099  Sum_probs=58.1

Q ss_pred             HHHHHHHHhhcCCCCCEEEEEcCCCc-hhHhhc---cCCeEEEEeCCCCCceEEEecCCCCCCCC--CceeeEeeccccc
Q psy10644        105 DIIIKSIQERESKGRLVIADLGCGEA-KLAAEL---TQHKVHSLDLVALNERVTSCDMTRTPLKP--YSVDVAVFCLSLM  178 (196)
Q Consensus       105 ~~~~~~l~~~~~~~~~~ILDlGCG~G-~~a~~l---~~~~v~giDls~~~~~~~~~d~~~lp~~~--~sfD~Vi~~~~lh  178 (196)
                      +.+.++|.+... .+.+|||||||.| ..|..|   .+..|+++|+++..+.+++.|+.+ |..+  ..||+|.+..-- 
T Consensus        23 e~LaeYI~~~~~-~~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av~~v~dDiF~-P~~~~Y~~~DLIYsirPP-   99 (153)
T 2k4m_A           23 NDLAVYIIRCSG-PGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHGGIVRDDITS-PRMEIYRGAALIYSIRPP-   99 (153)
T ss_dssp             HHHHHHHHHHSC-SSSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSSTTEECCCSSS-CCHHHHTTEEEEEEESCC-
T ss_pred             HHHHHHHHhcCC-CCCcEEEEccCCChHHHHHHHHhCCCeEEEEECCccccceEEccCCC-CcccccCCcCEEEEcCCC-
Confidence            445556544332 3579999999999 699988   466899999999888899999977 3322  479998765431 


Q ss_pred             ccCHHHHHHHHHH
Q psy10644        179 GTDLAACIKEANR  191 (196)
Q Consensus       179 ~~d~~~~l~e~~r  191 (196)
                       .+....|.++.+
T Consensus       100 -~El~~~i~~lA~  111 (153)
T 2k4m_A          100 -AEIHSSLMRVAD  111 (153)
T ss_dssp             -TTTHHHHHHHHH
T ss_pred             -HHHHHHHHHHHH
Confidence             144555555544

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=98.43  E-value=9e-07  Score=76.77  Aligned_cols=75  Identities=16%  Similarity=0.153  Sum_probs=54.1

Q ss_pred             CCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC--------------CCceEEEecCCCCCCCCCceeeEeecccccccC
Q psy10644        118 GRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA--------------LNERVTSCDMTRTPLKPYSVDVAVFCLSLMGTD  181 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~--------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~~d  181 (196)
                      ++.+|||+|||+|.++..+  .+.+|+|+|+++              ..+.++.+|+..+.. . .||+|++.....+..
T Consensus       290 ~~~~VLDlgcG~G~~sl~la~~~~~V~gvD~s~~ai~~A~~n~~~ngl~v~~~~~d~~~~~~-~-~fD~Vv~dPPr~g~~  367 (425)
T 2jjq_A          290 EGEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNVDAEFEVASDREVSV-K-GFDTVIVDPPRAGLH  367 (425)
T ss_dssp             CSSEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCCEEEEECCTTTCCC-T-TCSEEEECCCTTCSC
T ss_pred             CCCEEEEeeccchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEECChHHcCc-c-CCCEEEEcCCccchH
Confidence            4779999999999999888  456999999998              127899999987643 2 899999855432221


Q ss_pred             HHHHHHHHHHhccCC
Q psy10644        182 LAACIKEANRILKLG  196 (196)
Q Consensus       182 ~~~~l~e~~rvLkpg  196 (196)
                       ..+++.+. .|+||
T Consensus       368 -~~~~~~l~-~l~p~  380 (425)
T 2jjq_A          368 -PRLVKRLN-REKPG  380 (425)
T ss_dssp             -HHHHHHHH-HHCCS
T ss_pred             -HHHHHHHH-hcCCC
Confidence             23455443 47775

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.43  E-value=1.8e-07  Score=75.77  Aligned_cols=63  Identities=11%  Similarity=0.020  Sum_probs=48.2

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc-cCCe--EEEEeCCC-------------CCceEEEecCCCCCCCC-----CceeeEee
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL-TQHK--VHSLDLVA-------------LNERVTSCDMTRTPLKP-----YSVDVAVF  173 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l-~~~~--v~giDls~-------------~~~~~~~~d~~~lp~~~-----~sfD~Vi~  173 (196)
                      ...++.+|||||||+|.++. + .+.+  |+++|+++             .++.++.+|+..+++++     +..|.|++
T Consensus        18 ~~~~~~~VLEIG~G~G~lt~-l~~~~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~vvs   96 (252)
T 1qyr_A           18 NPQKGQAMVEIGPGLAALTE-PVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRVFG   96 (252)
T ss_dssp             CCCTTCCEEEECCTTTTTHH-HHHTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHHHHHTSCEEEEE
T ss_pred             CCCCcCEEEEECCCCcHHHH-hhhCCCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHHHhhcccCCceEEEE
Confidence            34457899999999999999 8 4456  99999998             26789999998887643     23467777


Q ss_pred             ccccc
Q psy10644        174 CLSLM  178 (196)
Q Consensus       174 ~~~lh  178 (196)
                      +.-.+
T Consensus        97 NlPY~  101 (252)
T 1qyr_A           97 NLPYN  101 (252)
T ss_dssp             ECCTT
T ss_pred             CCCCC
Confidence            76544

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=98.43  E-value=2.5e-08  Score=81.08  Aligned_cols=60  Identities=12%  Similarity=0.047  Sum_probs=48.2

Q ss_pred             CCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC-----------------------CCceEEEecCCCC-C-CCC--Cce
Q psy10644        118 GRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA-----------------------LNERVTSCDMTRT-P-LKP--YSV  168 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~-----------------------~~~~~~~~d~~~l-p-~~~--~sf  168 (196)
                      ++.+|||+|||+|.++..+  .+++|+++|+++                       .++.++.+|+.++ + +++  ++|
T Consensus        83 ~~~~VLDlgcG~G~~a~~lA~~g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~~~~f  162 (258)
T 2r6z_A           83 AHPTVWDATAGLGRDSFVLASLGLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKTQGKP  162 (258)
T ss_dssp             GCCCEEETTCTTCHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHHHCCC
T ss_pred             CcCeEEEeeCccCHHHHHHHHhCCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhccCCCc
Confidence            3678999999999998888  567999999998                       2388999998763 3 444  789


Q ss_pred             eeEeecccc
Q psy10644        169 DVAVFCLSL  177 (196)
Q Consensus       169 D~Vi~~~~l  177 (196)
                      |+|++.-.+
T Consensus       163 D~V~~dP~~  171 (258)
T 2r6z_A          163 DIVYLDPMY  171 (258)
T ss_dssp             SEEEECCCC
T ss_pred             cEEEECCCC
Confidence            999986554

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=98.39  E-value=1.4e-06  Score=74.37  Aligned_cols=62  Identities=16%  Similarity=0.162  Sum_probs=43.0

Q ss_pred             CCEEEEEcCCCchhHhhc-------------------cCCeEEEEeCCCCC---------------------------ce
Q psy10644        119 RLVIADLGCGEAKLAAEL-------------------TQHKVHSLDLVALN---------------------------ER  152 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l-------------------~~~~v~giDls~~~---------------------------~~  152 (196)
                      ..+|+|+|||+|..+..+                   +..+|+.-|+....                           ..
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~  132 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY  132 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred             ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence            588999999999886655                   12377777876511                           12


Q ss_pred             EEEecC---CCCCCCCCceeeEeeccccccc
Q psy10644        153 VTSCDM---TRTPLKPYSVDVAVFCLSLMGT  180 (196)
Q Consensus       153 ~~~~d~---~~lp~~~~sfD~Vi~~~~lh~~  180 (196)
                      ++.+..   -.-.+|+++||+|+++.+|||.
T Consensus       133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWl  163 (374)
T 3b5i_A          133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWL  163 (374)
T ss_dssp             EEEEEESCTTSCCSCTTCEEEEEEESCTTBC
T ss_pred             EEEecChhhhcccCCCcceEEEEecceeeee
Confidence            222222   2345789999999999999875

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.37  E-value=4.7e-07  Score=82.50  Aligned_cols=118  Identities=17%  Similarity=0.157  Sum_probs=79.9

Q ss_pred             ccCCChHHHHHHhhhCHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc------cC-
Q psy10644         66 LYTSKSEESKDFFTEDRESFEAYHEGFKKQVTQWPINPVDIIIKSIQERESKGRLVIADLGCGEAKLAAEL------TQ-  138 (196)
Q Consensus        66 ~y~~~~~~~~~~~~~~~~~f~~y~~~y~~~~~~w~~~~~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l------~~-  138 (196)
                      |..+-.....+.|.+++..++.|+..-.+.+           .+....  ..+...|||||||+|-+....      .+ 
T Consensus       370 L~dNLes~tYe~fekD~vRy~~Y~~AI~~al-----------~d~~~~--~~~~~VVldVGaGtGpLs~~al~A~~~a~~  436 (745)
T 3ua3_A          370 LSENLDSGVYNTFEQDQIKYDVYGEAVVGAL-----------KDLGAD--GRKTVVIYLLGGGRGPIGTKILKSEREYNN  436 (745)
T ss_dssp             TTSCCCHHHHHHHHHCHHHHHHHHHHHHHHH-----------HHHHTT--CCSEEEEEEESCTTCHHHHHHHHHHHHHHH
T ss_pred             chhccchHHHHHHcCChhhHHHHHHHHHHHH-----------HHhhcc--cCCCcEEEEECCCCCHHHHHHHHHHHHhCc
Confidence            3344456677778888888887765543211           111111  112458999999999885322      12 


Q ss_pred             ----------CeEEEEeCCC---------------CCceEEEecCCCCCCC-----CCceeeEeecccccc---cCHHHH
Q psy10644        139 ----------HKVHSLDLVA---------------LNERVTSCDMTRTPLK-----PYSVDVAVFCLSLMG---TDLAAC  185 (196)
Q Consensus       139 ----------~~v~giDls~---------------~~~~~~~~d~~~lp~~-----~~sfD~Vi~~~~lh~---~d~~~~  185 (196)
                                .+|+++|-++               ..+.++.+|++++.++     .+.+|+||+-..=.+   .-.+.+
T Consensus       437 ~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~~~~~ekVDIIVSElmGsfl~nEL~pe~  516 (745)
T 3ua3_A          437 TFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNELSPEC  516 (745)
T ss_dssp             HHSTTSCCCEEEEEEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHHHTTCCCCSEEEECCCBTTBGGGSHHHH
T ss_pred             cccccccccccEEEEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccccCCCCcccEEEEeccccccchhccHHH
Confidence                      2999999987               3589999999998774     578999998654221   134578


Q ss_pred             HHHHHHhccCC
Q psy10644        186 IKEANRILKLG  196 (196)
Q Consensus       186 l~e~~rvLkpg  196 (196)
                      |..+.|.||||
T Consensus       517 Ld~v~r~Lkp~  527 (745)
T 3ua3_A          517 LDGVTGFLKPT  527 (745)
T ss_dssp             HHTTGGGSCTT
T ss_pred             HHHHHHhCCCC
Confidence            88888999986

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=98.34  E-value=5.1e-07  Score=78.53  Aligned_cols=81  Identities=15%  Similarity=0.153  Sum_probs=60.7

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc-----------------cCCeEEEEeCCC---------------C--CceEEEecCCC
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL-----------------TQHKVHSLDLVA---------------L--NERVTSCDMTR  160 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l-----------------~~~~v~giDls~---------------~--~~~~~~~d~~~  160 (196)
                      .+.++.+|||.|||+|.++..+                 ....++|+|+++               .  +..+..+|...
T Consensus       168 ~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~  247 (445)
T 2okc_A          168 NPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLE  247 (445)
T ss_dssp             CCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTT
T ss_pred             CCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCC
Confidence            3445779999999999986555                 135799999998               1  56788888866


Q ss_pred             CCCCCCceeeEeeccccccc---C---------------HHHHHHHHHHhccCC
Q psy10644        161 TPLKPYSVDVAVFCLSLMGT---D---------------LAACIKEANRILKLG  196 (196)
Q Consensus       161 lp~~~~sfD~Vi~~~~lh~~---d---------------~~~~l~e~~rvLkpg  196 (196)
                      .+.. ..||+|+++-.++..   +               ...++.++.++||||
T Consensus       248 ~~~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~g  300 (445)
T 2okc_A          248 KEPS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTG  300 (445)
T ss_dssp             SCCS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEE
T ss_pred             Cccc-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccC
Confidence            5543 489999998666321   1               147899999999985

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=98.32  E-value=1.4e-06  Score=71.21  Aligned_cols=94  Identities=15%  Similarity=0.084  Sum_probs=60.6

Q ss_pred             hHHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhcc---C-CeEEEEeCCCC-------------CceEEEecCCCCCCCC
Q psy10644        103 PVDIIIKSIQERESKGRLVIADLGCGEAKLAAELT---Q-HKVHSLDLVAL-------------NERVTSCDMTRTPLKP  165 (196)
Q Consensus       103 ~~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l~---~-~~v~giDls~~-------------~~~~~~~d~~~lp~~~  165 (196)
                      ..-.+++...+....++.+|||||||.|.|++.+.   + ..|+|+|+...             ++.....+++-..++.
T Consensus        75 AAfKL~ei~eK~~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~~l~~  154 (282)
T 3gcz_A           75 GSAKLRWMEERGYVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVFNMEV  154 (282)
T ss_dssp             HHHHHHHHHHTTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGGGSCC
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccccccCCCceEEeeCCcchhhcCC
Confidence            34445555554445567899999999999999762   2 27889998741             2223333333334667


Q ss_pred             CceeeEeeccccc----ccCHH---HHHHHHHHhccCC
Q psy10644        166 YSVDVAVFCLSLM----GTDLA---ACIKEANRILKLG  196 (196)
Q Consensus       166 ~sfD~Vi~~~~lh----~~d~~---~~l~e~~rvLkpg  196 (196)
                      +.+|+|+|-.+.+    ..|..   .+|.-+.++||||
T Consensus       155 ~~~DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g  192 (282)
T 3gcz_A          155 IPGDTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEG  192 (282)
T ss_dssp             CCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcCEEEecCccCCCChHHHHHHHHHHHHHHHHHcCCC
Confidence            8999999988775    22222   2466667788875

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=98.31  E-value=3.8e-07  Score=75.69  Aligned_cols=69  Identities=17%  Similarity=0.208  Sum_probs=52.3

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC--------------CCceEEEecCCCCC--C
Q psy10644        104 VDIIIKSIQERESKGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA--------------LNERVTSCDMTRTP--L  163 (196)
Q Consensus       104 ~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~--------------~~~~~~~~d~~~lp--~  163 (196)
                      ++.+++.+   ...++.+|||+|||+|.++..+    .+.+|+|+|+++              .++.++.+|+..++  +
T Consensus        15 l~e~l~~L---~~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l   91 (301)
T 1m6y_A           15 VREVIEFL---KPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLL   91 (301)
T ss_dssp             HHHHHHHH---CCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHH
T ss_pred             HHHHHHhc---CCCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHH
Confidence            45555555   3445789999999999998877    257999999998              26789999987765  2


Q ss_pred             C---CCceeeEeecc
Q psy10644        164 K---PYSVDVAVFCL  175 (196)
Q Consensus       164 ~---~~sfD~Vi~~~  175 (196)
                      +   .+.||+|++..
T Consensus        92 ~~~g~~~~D~Vl~D~  106 (301)
T 1m6y_A           92 KTLGIEKVDGILMDL  106 (301)
T ss_dssp             HHTTCSCEEEEEEEC
T ss_pred             HhcCCCCCCEEEEcC
Confidence            2   25799998754

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.30  E-value=8.4e-07  Score=71.59  Aligned_cols=64  Identities=17%  Similarity=0.153  Sum_probs=47.4

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc--c-CCeEEEEeCCC-----------CCceEEEecCCCCCCCCCc-eeeEeeccccc
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL--T-QHKVHSLDLVA-----------LNERVTSCDMTRTPLKPYS-VDVAVFCLSLM  178 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l--~-~~~v~giDls~-----------~~~~~~~~d~~~lp~~~~s-fD~Vi~~~~lh  178 (196)
                      ...++.+|||||||+|.++..+  . ..+|+|+|+++           .++.++.+|+..+++++.. ...|+++.-.+
T Consensus        28 ~~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~vv~NlPy~  106 (249)
T 3ftd_A           28 NIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSIGDERLEVINEDASKFPFCSLGKELKVVGNLPYN  106 (249)
T ss_dssp             TCCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTSCCTTEEEECSCTTTCCGGGSCSSEEEEEECCTT
T ss_pred             CCCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhccCCCeEEEEcchhhCChhHccCCcEEEEECchh
Confidence            3445789999999999999999  3 36999999998           2578999999988876421 12455544433

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.29  E-value=7.4e-07  Score=73.19  Aligned_cols=51  Identities=12%  Similarity=0.145  Sum_probs=41.7

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc--cCCe----EEEEeCCC-----------CCceEEEecCCCCCCCC
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL--TQHK----VHSLDLVA-----------LNERVTSCDMTRTPLKP  165 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l--~~~~----v~giDls~-----------~~~~~~~~d~~~lp~~~  165 (196)
                      ...++.+|||||||+|.++..|  ....    |+|+|+++           .++.++.+|+..+++++
T Consensus        39 ~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~~~~~~~~  106 (279)
T 3uzu_A           39 RPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDALTFDFGS  106 (279)
T ss_dssp             CCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCGGGCCGGG
T ss_pred             CCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECChhcCChhH
Confidence            4445789999999999999988  2345    99999998           36889999998887653

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=98.29  E-value=1.7e-06  Score=74.32  Aligned_cols=78  Identities=13%  Similarity=0.036  Sum_probs=58.6

Q ss_pred             CCCCEEEEEcCCCchhHhhc----cC--------------------------------------CeEEEEeCCC------
Q psy10644        117 KGRLVIADLGCGEAKLAAEL----TQ--------------------------------------HKVHSLDLVA------  148 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l----~~--------------------------------------~~v~giDls~------  148 (196)
                      .++..|||.+||+|.++...    .+                                      .+|+|+|+++      
T Consensus       200 ~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~A  279 (393)
T 3k0b_A          200 HPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIA  279 (393)
T ss_dssp             CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHH
T ss_pred             CCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHH
Confidence            45778999999999885554    11                                      3599999998      


Q ss_pred             ----------CCceEEEecCCCCCCCCCceeeEeeccccc---c--cCHHHHHHHHHHhccC
Q psy10644        149 ----------LNERVTSCDMTRTPLKPYSVDVAVFCLSLM---G--TDLAACIKEANRILKL  195 (196)
Q Consensus       149 ----------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh---~--~d~~~~l~e~~rvLkp  195 (196)
                                ..+.+.++|+..++.+ ++||+|++.--+.   .  .+...+++++.++||+
T Consensus       280 r~Na~~~gl~~~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~  340 (393)
T 3k0b_A          280 KQNAVEAGLGDLITFRQLQVADFQTE-DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKR  340 (393)
T ss_dssp             HHHHHHTTCTTCSEEEECCGGGCCCC-CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCCCceEEEECChHhCCCC-CCCCEEEECCCCccccCCchhHHHHHHHHHHHHhc
Confidence                      2488999999888765 5899999984442   2  2556677777777765

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=98.23  E-value=2.7e-06  Score=72.87  Aligned_cols=78  Identities=9%  Similarity=0.027  Sum_probs=59.6

Q ss_pred             CCCCEEEEEcCCCchhHhhc----cC--------------------------------------CeEEEEeCCC------
Q psy10644        117 KGRLVIADLGCGEAKLAAEL----TQ--------------------------------------HKVHSLDLVA------  148 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l----~~--------------------------------------~~v~giDls~------  148 (196)
                      .++..|||.+||+|.++...    .+                                      .+|+|+|+++      
T Consensus       193 ~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~A  272 (384)
T 3ldg_A          193 FPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIA  272 (384)
T ss_dssp             CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHH
T ss_pred             CCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHH
Confidence            45788999999999886554    11                                      3599999998      


Q ss_pred             ----------CCceEEEecCCCCCCCCCceeeEeeccccc---c--cCHHHHHHHHHHhccC
Q psy10644        149 ----------LNERVTSCDMTRTPLKPYSVDVAVFCLSLM---G--TDLAACIKEANRILKL  195 (196)
Q Consensus       149 ----------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh---~--~d~~~~l~e~~rvLkp  195 (196)
                                ..+.+.++|+..++.+ .+||+|++.--+.   +  .+...+++++.++||+
T Consensus       273 r~Na~~~gl~~~I~~~~~D~~~l~~~-~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~  333 (384)
T 3ldg_A          273 RKNAREVGLEDVVKLKQMRLQDFKTN-KINGVLISNPPYGERLLDDKAVDILYNEMGETFAP  333 (384)
T ss_dssp             HHHHHHTTCTTTEEEEECCGGGCCCC-CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCCCceEEEECChHHCCcc-CCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhh
Confidence                      2478999999888765 4899999985542   2  2567788888888875

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.21  E-value=5.2e-07  Score=73.32  Aligned_cols=74  Identities=14%  Similarity=0.035  Sum_probs=50.3

Q ss_pred             CEEEEEcCCCchhHhhc--cCCeEEEEeCCC------------------------CCceEEEecCCC-CCCCCCceeeEe
Q psy10644        120 LVIADLGCGEAKLAAEL--TQHKVHSLDLVA------------------------LNERVTSCDMTR-TPLKPYSVDVAV  172 (196)
Q Consensus       120 ~~ILDlGCG~G~~a~~l--~~~~v~giDls~------------------------~~~~~~~~d~~~-lp~~~~sfD~Vi  172 (196)
                      .+|||+|||+|..+..+  .+++|+++|+++                        .++.++.+|..+ ++...+.||+|+
T Consensus        90 ~~VLDl~~G~G~dal~lA~~g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~~~~fDvV~  169 (258)
T 2oyr_A           90 PDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVVY  169 (258)
T ss_dssp             CCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSEEE
T ss_pred             CEEEEcCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhCcccCCEEE
Confidence            79999999999998888  577999999998                        135688888755 332234799999


Q ss_pred             ecccccccCHHHHHHHHHHhc
Q psy10644        173 FCLSLMGTDLAACIKEANRIL  193 (196)
Q Consensus       173 ~~~~lh~~d~~~~l~e~~rvL  193 (196)
                      +.-.++......++++..++|
T Consensus       170 lDP~y~~~~~saavkk~~~~l  190 (258)
T 2oyr_A          170 LDPMFPHKQKSALVKKEMRVF  190 (258)
T ss_dssp             ECCCCCCCCC-----HHHHHH
T ss_pred             EcCCCCCcccchHHHHHHHHH
Confidence            987774332223444444444

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=98.20  E-value=2.5e-06  Score=73.07  Aligned_cols=79  Identities=15%  Similarity=0.105  Sum_probs=60.2

Q ss_pred             CCCCCEEEEEcCCCchhHhhc----cC--------------------------------------CeEEEEeCCC-----
Q psy10644        116 SKGRLVIADLGCGEAKLAAEL----TQ--------------------------------------HKVHSLDLVA-----  148 (196)
Q Consensus       116 ~~~~~~ILDlGCG~G~~a~~l----~~--------------------------------------~~v~giDls~-----  148 (196)
                      ..++..|||.+||+|.++..+    .+                                      .+|+|+|+++     
T Consensus       193 ~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~  272 (385)
T 3ldu_A          193 WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDI  272 (385)
T ss_dssp             CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHH
T ss_pred             CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHH
Confidence            345789999999999886555    11                                      4799999998     


Q ss_pred             -----------CCceEEEecCCCCCCCCCceeeEeeccccc---c--cCHHHHHHHHHHhccC
Q psy10644        149 -----------LNERVTSCDMTRTPLKPYSVDVAVFCLSLM---G--TDLAACIKEANRILKL  195 (196)
Q Consensus       149 -----------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh---~--~d~~~~l~e~~rvLkp  195 (196)
                                 .++.+.++|+.+++.+ +.||+|++.--+.   .  .+...+++++.++||+
T Consensus       273 Ar~Na~~~gl~~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~  334 (385)
T 3ldu_A          273 ARENAEIAGVDEYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRK  334 (385)
T ss_dssp             HHHHHHHHTCGGGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCCceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhh
Confidence                       2578999999888764 5899999976652   2  2566778888888875

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=98.13  E-value=2.2e-05  Score=64.66  Aligned_cols=98  Identities=11%  Similarity=-0.030  Sum_probs=62.0

Q ss_pred             CCCChHHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhccC----CeEEEEeCCCC-------------CceEEEecCCCC
Q psy10644         99 WPINPVDIIIKSIQERESKGRLVIADLGCGEAKLAAELTQ----HKVHSLDLVAL-------------NERVTSCDMTRT  161 (196)
Q Consensus        99 w~~~~~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l~~----~~v~giDls~~-------------~~~~~~~d~~~l  161 (196)
                      |.....-.+++........++.+||||||++|.|++.+..    ..|+|+|+...             ++.....++.-.
T Consensus        62 yrSRaa~KL~ei~ek~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~di~  141 (300)
T 3eld_A           62 SVSRGAAKIRWLHERGYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKSNVF  141 (300)
T ss_dssp             CSSTTHHHHHHHHHHTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCTT
T ss_pred             ccchHHHHHHHHHHhCCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccccccccCCceEEeecCceee
Confidence            3334444455444443345688999999999999999943    27889998641             122223333333


Q ss_pred             CCCCCceeeEeeccccc----ccCH---HHHHHHHHHhccCC
Q psy10644        162 PLKPYSVDVAVFCLSLM----GTDL---AACIKEANRILKLG  196 (196)
Q Consensus       162 p~~~~sfD~Vi~~~~lh----~~d~---~~~l~e~~rvLkpg  196 (196)
                      .++.+.+|+|++-.+.+    ..|.   ..+|.-+.++|+||
T Consensus       142 ~l~~~~~DlVlsD~APnsG~~~~D~~rs~~LL~~A~~~LkpG  183 (300)
T 3eld_A          142 TMPTEPSDTLLCDIGESSSNPLVERDRTMKVLENFERWKHVN  183 (300)
T ss_dssp             TSCCCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTT
T ss_pred             ecCCCCcCEEeecCcCCCCCHHHHHHHHHHHHHHHHHHhcCC
Confidence            45678899999976665    1122   23466777899986

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=98.07  E-value=4.8e-06  Score=70.66  Aligned_cols=56  Identities=13%  Similarity=0.242  Sum_probs=43.6

Q ss_pred             CCEEEEEcCCCchhHhhc--cCCeEEEEeCCC---------------CCceEEEecCCCCC--CCC--------------
Q psy10644        119 RLVIADLGCGEAKLAAEL--TQHKVHSLDLVA---------------LNERVTSCDMTRTP--LKP--------------  165 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l--~~~~v~giDls~---------------~~~~~~~~d~~~lp--~~~--------------  165 (196)
                      +.+|||+|||+|.++..+  ...+|+|+|+++               .++.++.+|+.++.  +..              
T Consensus       214 ~~~vLDl~cG~G~~~l~la~~~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~  293 (369)
T 3bt7_A          214 KGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKS  293 (369)
T ss_dssp             CSEEEEESCTTSHHHHHHGGGSSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCGGG
T ss_pred             CCEEEEccCCCCHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhcccccccccccccc
Confidence            568999999999999888  345899999998               36788988886531  221              


Q ss_pred             CceeeEeec
Q psy10644        166 YSVDVAVFC  174 (196)
Q Consensus       166 ~sfD~Vi~~  174 (196)
                      ..||+|++.
T Consensus       294 ~~fD~Vv~d  302 (369)
T 3bt7_A          294 YQCETIFVD  302 (369)
T ss_dssp             CCEEEEEEC
T ss_pred             CCCCEEEEC
Confidence            379999864

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=98.03  E-value=5.9e-06  Score=70.72  Aligned_cols=62  Identities=15%  Similarity=0.125  Sum_probs=44.1

Q ss_pred             CCEEEEEcCCCchhHhhc--c-------------------CCeEEEEeCCCC------------------------CceE
Q psy10644        119 RLVIADLGCGEAKLAAEL--T-------------------QHKVHSLDLVAL------------------------NERV  153 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l--~-------------------~~~v~giDls~~------------------------~~~~  153 (196)
                      ..+|+|+||++|..+..+  .                   ..+|+.-|+...                        +..|
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f  132 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL  132 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence            578999999999876655  0                   125666677630                        1345


Q ss_pred             EEecCCC---CCCCCCceeeEeeccccccc
Q psy10644        154 TSCDMTR---TPLKPYSVDVAVFCLSLMGT  180 (196)
Q Consensus       154 ~~~d~~~---lp~~~~sfD~Vi~~~~lh~~  180 (196)
                      +.+....   -.||+++||+|+++.+|||.
T Consensus       133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWl  162 (384)
T 2efj_A          133 IGAMPGSFYSRLFPEESMHFLHSCYCLHWL  162 (384)
T ss_dssp             EEECCSCTTSCCSCTTCEEEEEEESCTTBC
T ss_pred             EEecchhhhhccCCCCceEEEEecceeeec
Confidence            5554433   46889999999999999985

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=97.93  E-value=1.8e-05  Score=65.74  Aligned_cols=59  Identities=15%  Similarity=0.134  Sum_probs=46.4

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC---------------CCceEEEecCCCCCCCC---CceeeE
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA---------------LNERVTSCDMTRTPLKP---YSVDVA  171 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~---------------~~~~~~~~d~~~lp~~~---~sfD~V  171 (196)
                      .+.++.+|||+|||+|..+..+     ...+|+++|+++               .++.++.+|+..++...   +.||+|
T Consensus        99 ~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~V  178 (309)
T 2b9e_A           99 DPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYI  178 (309)
T ss_dssp             CCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEE
T ss_pred             CCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEE
Confidence            3445889999999999987776     236999999998               36788899987765332   579999


Q ss_pred             ee
Q psy10644        172 VF  173 (196)
Q Consensus       172 i~  173 (196)
                      ++
T Consensus       179 l~  180 (309)
T 2b9e_A          179 LL  180 (309)
T ss_dssp             EE
T ss_pred             EE
Confidence            97

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=97.89  E-value=5.5e-06  Score=73.91  Aligned_cols=82  Identities=13%  Similarity=0.122  Sum_probs=59.0

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc----c------------------CCeEEEEeCCC---------------CC-----ce
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL----T------------------QHKVHSLDLVA---------------LN-----ER  152 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l----~------------------~~~v~giDls~---------------~~-----~~  152 (196)
                      .+.++.+|||.+||+|.+...+    .                  ...++|+|+++               .+     ..
T Consensus       166 ~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~  245 (541)
T 2ar0_A          166 KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGA  245 (541)
T ss_dssp             CCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBS
T ss_pred             ccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCC
Confidence            3445779999999999886544    1                  13799999998               12     56


Q ss_pred             EEEecCCCCC-CCCCceeeEeeccccccc---------------CHHHHHHHHHHhccCC
Q psy10644        153 VTSCDMTRTP-LKPYSVDVAVFCLSLMGT---------------DLAACIKEANRILKLG  196 (196)
Q Consensus       153 ~~~~d~~~lp-~~~~sfD~Vi~~~~lh~~---------------d~~~~l~e~~rvLkpg  196 (196)
                      +..+|....+ .+...||+|+++--+...               ....++..+.+.||||
T Consensus       246 I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~g  305 (541)
T 2ar0_A          246 IRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPG  305 (541)
T ss_dssp             EEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEE
T ss_pred             eEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCC
Confidence            7888865433 345789999997655321               1347899999999985

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=97.89  E-value=1.5e-05  Score=67.55  Aligned_cols=79  Identities=22%  Similarity=0.140  Sum_probs=57.1

Q ss_pred             CCCEEEEEcCCCchhHhhc-c-------------------CCeEEEEeCCC----------C------CceEEEecCC--
Q psy10644        118 GRLVIADLGCGEAKLAAEL-T-------------------QHKVHSLDLVA----------L------NERVTSCDMT--  159 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l-~-------------------~~~v~giDls~----------~------~~~~~~~d~~--  159 (196)
                      ...+|+|+||++|..+..+ .                   ..+|+..|+..          +      +..|+.+...  
T Consensus        51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSF  130 (359)
T 1m6e_X           51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSF  130 (359)
T ss_dssp             SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCS
T ss_pred             CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhh
Confidence            3578999999999776554 1                   13677888776          1      2245554443  


Q ss_pred             -CCCCCCCceeeEeeccccccc-C---------------------------------HHHHHHHHHHhccCC
Q psy10644        160 -RTPLKPYSVDVAVFCLSLMGT-D---------------------------------LAACIKEANRILKLG  196 (196)
Q Consensus       160 -~lp~~~~sfD~Vi~~~~lh~~-d---------------------------------~~~~l~e~~rvLkpg  196 (196)
                       ...||++++|+|+++.+|||. +                                 +..+|+..++.|+||
T Consensus       131 y~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pG  202 (359)
T 1m6e_X          131 YGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPG  202 (359)
T ss_dssp             SSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTT
T ss_pred             hhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence             357899999999999999875 2                                 234588889999997

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=97.89  E-value=2.5e-06  Score=73.57  Aligned_cols=56  Identities=18%  Similarity=0.156  Sum_probs=45.0

Q ss_pred             CCEEEEEcCCCchhHhhc--cCCeEEEEeCCC------------C-----CceEEEecCCCC-CC-CCCceeeEeec
Q psy10644        119 RLVIADLGCGEAKLAAEL--TQHKVHSLDLVA------------L-----NERVTSCDMTRT-PL-KPYSVDVAVFC  174 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l--~~~~v~giDls~------------~-----~~~~~~~d~~~l-p~-~~~sfD~Vi~~  174 (196)
                      +.+|||+|||+|..+..+  .+.+|+++|+++            .     ++.++++|+... +. +++.||+|++.
T Consensus        94 g~~VLDLgcG~G~~al~LA~~g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~lD  170 (410)
T 3ll7_A           94 GTKVVDLTGGLGIDFIALMSKASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVD  170 (410)
T ss_dssp             TCEEEESSCSSSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEEC
T ss_pred             CCEEEEeCCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEEC
Confidence            689999999999998888  456999999998            1     367888998763 32 34689999984

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=97.82  E-value=4.5e-05  Score=60.96  Aligned_cols=76  Identities=13%  Similarity=0.057  Sum_probs=53.7

Q ss_pred             CCChHHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc---cC-CeEEEEeCCC--------------CCceEEEe-cCCC
Q psy10644        100 PINPVDIIIKSIQERESKGRLVIADLGCGEAKLAAEL---TQ-HKVHSLDLVA--------------LNERVTSC-DMTR  160 (196)
Q Consensus       100 ~~~~~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l---~~-~~v~giDls~--------------~~~~~~~~-d~~~  160 (196)
                      .....-.+++...+....++.+||||||++|.|++..   .+ .+|+|+|+-.              ..+.|..+ |+..
T Consensus        60 rSRa~~KL~ei~ek~~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~  139 (267)
T 3p8z_A           60 VSRGSAKLQWFVERNMVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFY  139 (267)
T ss_dssp             SSTHHHHHHHHHHTTSSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGG
T ss_pred             cchHHHHHHHHHHhcCCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEeccceee
Confidence            3344444555555444556889999999999999966   22 3899999876              35678877 8765


Q ss_pred             CCCCCCceeeEeecccc
Q psy10644        161 TPLKPYSVDVAVFCLSL  177 (196)
Q Consensus       161 lp~~~~sfD~Vi~~~~l  177 (196)
                      ++-  ..+|.|+|-.+=
T Consensus       140 ~~~--~~~DtllcDIge  154 (267)
T 3p8z_A          140 LPP--EKCDTLLCDIGE  154 (267)
T ss_dssp             CCC--CCCSEEEECCCC
T ss_pred             cCC--ccccEEEEecCC
Confidence            543  569999986655

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=97.77  E-value=5.9e-06  Score=70.57  Aligned_cols=75  Identities=11%  Similarity=-0.011  Sum_probs=53.9

Q ss_pred             CCEEEEEcCCCchhHhhc----cCCeEEEEeCCC------------C---------------C---ceEEEecCCCCC-C
Q psy10644        119 RLVIADLGCGEAKLAAEL----TQHKVHSLDLVA------------L---------------N---ERVTSCDMTRTP-L  163 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l----~~~~v~giDls~------------~---------------~---~~~~~~d~~~lp-~  163 (196)
                      +.+|||+|||+|.++..+    .+.+|+++|+++            .               +   +.++.+|+..+. .
T Consensus        48 ~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~~  127 (378)
T 2dul_A           48 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAE  127 (378)
T ss_dssp             CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHH
T ss_pred             CCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHHh
Confidence            679999999999997776    235899999998            2               2   556677764432 1


Q ss_pred             CCCceeeEeecccccccCHHHHHHHHHHhccCC
Q psy10644        164 KPYSVDVAVFCLSLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       164 ~~~sfD~Vi~~~~lh~~d~~~~l~e~~rvLkpg  196 (196)
                      ..+.||+|++. ..  .....++..+.++||||
T Consensus       128 ~~~~fD~I~lD-P~--~~~~~~l~~a~~~lk~g  157 (378)
T 2dul_A          128 RHRYFHFIDLD-PF--GSPMEFLDTALRSAKRR  157 (378)
T ss_dssp             STTCEEEEEEC-CS--SCCHHHHHHHHHHEEEE
T ss_pred             ccCCCCEEEeC-CC--CCHHHHHHHHHHhcCCC
Confidence            13579999843 21  13468889999999875

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=97.75  E-value=4.8e-05  Score=62.59  Aligned_cols=96  Identities=15%  Similarity=0.106  Sum_probs=61.0

Q ss_pred             CCCChHHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc---cC-CeEEEEeCCCC-------------C-ceEEEe-cCC
Q psy10644         99 WPINPVDIIIKSIQERESKGRLVIADLGCGEAKLAAEL---TQ-HKVHSLDLVAL-------------N-ERVTSC-DMT  159 (196)
Q Consensus        99 w~~~~~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l---~~-~~v~giDls~~-------------~-~~~~~~-d~~  159 (196)
                      |.....-.+++........++.+||||||++|.|++..   .+ ..|+|+|+-..             + +.++.. |+.
T Consensus        75 y~SR~~~KL~ei~~~~~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~  154 (321)
T 3lkz_A           75 PVSRGTAKLRWLVERRFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVF  154 (321)
T ss_dssp             CSSTHHHHHHHHHHTTSCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTT
T ss_pred             ccchHHHHHHHHHHhcCCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHh
Confidence            34444555555555555556789999999999999966   22 27999999873             2 345554 666


Q ss_pred             CCCCCCCceeeEeecccccc----cCHHH---HHHHHHHhccCC
Q psy10644        160 RTPLKPYSVDVAVFCLSLMG----TDLAA---CIKEANRILKLG  196 (196)
Q Consensus       160 ~lp~~~~sfD~Vi~~~~lh~----~d~~~---~l~e~~rvLkpg  196 (196)
                      .++.  ..+|+|+|-.+=..    .+...   +|.-+.++|++|
T Consensus       155 ~l~~--~~~D~ivcDigeSs~~~~ve~~Rtl~vLel~~~wL~~~  196 (321)
T 3lkz_A          155 YRPS--ECCDTLLCDIGESSSSAEVEEHRTIRVLEMVEDWLHRG  196 (321)
T ss_dssp             SSCC--CCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             hCCC--CCCCEEEEECccCCCChhhhhhHHHHHHHHHHHHhccC
Confidence            6543  56999988665211    12222   455556667654

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=97.73  E-value=6.3e-05  Score=60.77  Aligned_cols=96  Identities=10%  Similarity=0.004  Sum_probs=59.2

Q ss_pred             CCCChHHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhccCC--------eEEEEe--CCC-----CCceEEE---e-cCC
Q psy10644         99 WPINPVDIIIKSIQERESKGRLVIADLGCGEAKLAAELTQH--------KVHSLD--LVA-----LNERVTS---C-DMT  159 (196)
Q Consensus        99 w~~~~~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l~~~--------~v~giD--ls~-----~~~~~~~---~-d~~  159 (196)
                      |.....-.+++...+...+++.+||||||+.|.|++.....        .|+|+|  +.|     .++.++.   + |+.
T Consensus        54 yRSRAayKL~EIdeK~likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~~~~Gv~~i~~~~G~Df~  133 (269)
T 2px2_A           54 PVSRGTAKLRWLVERRFVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLMQSYGWNIVTMKSGVDVF  133 (269)
T ss_dssp             CSSTHHHHHHHHHHTTSCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCGG
T ss_pred             cccHHHHHHHHHHHcCCCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCcccCCCceEEEeeccCCcc
Confidence            33344444454444444567899999999999999988322        344556  333     1344444   4 886


Q ss_pred             CCCCCCCceeeEeeccccc----ccCHHH---HHHHHHHhccCC
Q psy10644        160 RTPLKPYSVDVAVFCLSLM----GTDLAA---CIKEANRILKLG  196 (196)
Q Consensus       160 ~lp~~~~sfD~Vi~~~~lh----~~d~~~---~l~e~~rvLkpg  196 (196)
                      .+  +...+|+|+|-.+-.    ..|...   +|.-+.++|+||
T Consensus       134 ~~--~~~~~DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~g  175 (269)
T 2px2_A          134 YK--PSEISDTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSRG  175 (269)
T ss_dssp             GS--CCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CC--CCCCCCEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhcC
Confidence            63  356799999876542    113332   566666889886

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=97.64  E-value=1.3e-05  Score=68.72  Aligned_cols=76  Identities=12%  Similarity=0.028  Sum_probs=55.7

Q ss_pred             CCCEEEEEcCCCchhHhhc-c---C-CeEEEEeCCC---------------CC--ceEEEecCCCC-C-CCCCceeeEee
Q psy10644        118 GRLVIADLGCGEAKLAAEL-T---Q-HKVHSLDLVA---------------LN--ERVTSCDMTRT-P-LKPYSVDVAVF  173 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l-~---~-~~v~giDls~---------------~~--~~~~~~d~~~l-p-~~~~sfD~Vi~  173 (196)
                      ++.+|||++||+|.++..+ .   + .+|+++|+++               .+  +.++.+|+..+ . ...+.||+|++
T Consensus        52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~l  131 (392)
T 3axs_A           52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDL  131 (392)
T ss_dssp             SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEE
T ss_pred             CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEE
Confidence            3679999999999998877 2   3 4899999998               23  77888887442 1 12457999987


Q ss_pred             cccccccCHHHHHHHHHHhccCC
Q psy10644        174 CLSLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       174 ~~~lh~~d~~~~l~e~~rvLkpg  196 (196)
                      .- .  -....++..+.++|+||
T Consensus       132 DP-~--g~~~~~l~~a~~~Lk~g  151 (392)
T 3axs_A          132 DP-F--GTPVPFIESVALSMKRG  151 (392)
T ss_dssp             CC-S--SCCHHHHHHHHHHEEEE
T ss_pred             CC-C--cCHHHHHHHHHHHhCCC
Confidence            54 1  12356888899988875

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=97.59  E-value=0.00029  Score=58.06  Aligned_cols=78  Identities=17%  Similarity=0.171  Sum_probs=60.4

Q ss_pred             CCEEEEEcCCCchhHhhcc----CCeEEEEeCCC--------------------CCceEEEecCCC-CCCCCCceeeEee
Q psy10644        119 RLVIADLGCGEAKLAAELT----QHKVHSLDLVA--------------------LNERVTSCDMTR-TPLKPYSVDVAVF  173 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l~----~~~v~giDls~--------------------~~~~~~~~d~~~-lp~~~~sfD~Vi~  173 (196)
                      ..+||=||.|.|..++.+.    ..+|+.+|+++                    ++++++.+|... +.-..++||+|+.
T Consensus        84 pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvIi~  163 (294)
T 3o4f_A           84 AKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVIIS  163 (294)
T ss_dssp             CCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEEEE
T ss_pred             CCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEEEE
Confidence            5699999999999999882    24899999998                    478899999855 4455678999986


Q ss_pred             cccc-ccc----CHHHHHHHHHHhccCC
Q psy10644        174 CLSL-MGT----DLAACIKEANRILKLG  196 (196)
Q Consensus       174 ~~~l-h~~----d~~~~l~e~~rvLkpg  196 (196)
                      -..= .+.    --..+++.++++|+||
T Consensus       164 D~~dp~~~~~~L~t~eFy~~~~~~L~p~  191 (294)
T 3o4f_A          164 DCTDPIGPGESLFTSAFYEGCKRCLNPG  191 (294)
T ss_dssp             SCCCCCCTTCCSSCCHHHHHHHHTEEEE
T ss_pred             eCCCcCCCchhhcCHHHHHHHHHHhCCC
Confidence            5432 111    3467899999999986

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=97.56  E-value=0.00015  Score=66.54  Aligned_cols=78  Identities=19%  Similarity=0.139  Sum_probs=53.5

Q ss_pred             CCCCEEEEEcCCCchhHhhc---c-------------------------------------------CCeEEEEeCCC--
Q psy10644        117 KGRLVIADLGCGEAKLAAEL---T-------------------------------------------QHKVHSLDLVA--  148 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l---~-------------------------------------------~~~v~giDls~--  148 (196)
                      .++..|||.+||+|.++...   .                                           ...|+|+|+++  
T Consensus       189 ~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~a  268 (703)
T 3v97_A          189 QPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARV  268 (703)
T ss_dssp             CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHH
T ss_pred             CCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHH
Confidence            45778999999999885543   1                                           14799999999  


Q ss_pred             --------------CCceEEEecCCCC--CCCCCceeeEeecccc---ccc--CHHHHHHHHHHhcc
Q psy10644        149 --------------LNERVTSCDMTRT--PLKPYSVDVAVFCLSL---MGT--DLAACIKEANRILK  194 (196)
Q Consensus       149 --------------~~~~~~~~d~~~l--p~~~~sfD~Vi~~~~l---h~~--d~~~~l~e~~rvLk  194 (196)
                                    ..+.+.++|+..+  |...+.||+|+++--+   ...  +...+++.+.++||
T Consensus       269 v~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk  335 (703)
T 3v97_A          269 IQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMK  335 (703)
T ss_dssp             HHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHH
Confidence                          2378999999876  3334589999998443   222  44555555555544

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=97.49  E-value=4e-05  Score=62.06  Aligned_cols=79  Identities=15%  Similarity=0.140  Sum_probs=52.8

Q ss_pred             CCCEEEEEcCCCchhHhhc-----------c-----CCeEEEEeCCC---------------------------------
Q psy10644        118 GRLVIADLGCGEAKLAAEL-----------T-----QHKVHSLDLVA---------------------------------  148 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l-----------~-----~~~v~giDls~---------------------------------  148 (196)
                      +..+|||+|||+|..+..+           +     ..+|+++|..|                                 
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g  139 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  139 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence            3579999999999875443           1     13899999765                                 


Q ss_pred             ----------CCceEEEecCCC-CCCCC----CceeeEeec-ccc-cccC--HHHHHHHHHHhccCC
Q psy10644        149 ----------LNERVTSCDMTR-TPLKP----YSVDVAVFC-LSL-MGTD--LAACIKEANRILKLG  196 (196)
Q Consensus       149 ----------~~~~~~~~d~~~-lp~~~----~sfD~Vi~~-~~l-h~~d--~~~~l~e~~rvLkpg  196 (196)
                                .++.++.+|+.+ ++.-+    ..||+|+.- ++- ...+  ...+|.+++|+||||
T Consensus       140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pG  206 (257)
T 2qy6_A          140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPG  206 (257)
T ss_dssp             EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEE
T ss_pred             hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCC
Confidence                      123466677644 44222    279998873 222 1222  467999999999986

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=97.35  E-value=0.00035  Score=57.25  Aligned_cols=71  Identities=18%  Similarity=0.085  Sum_probs=53.9

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC-----------CCceEEEecCCCCC-----CCC
Q psy10644        104 VDIIIKSIQERESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA-----------LNERVTSCDMTRTP-----LKP  165 (196)
Q Consensus       104 ~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~-----------~~~~~~~~d~~~lp-----~~~  165 (196)
                      .+.+++.|   .+.++..+||.+||.|..+..|  .+.+|+|+|.++           .++.++.++..+++     ...
T Consensus        11 l~e~le~L---~~~~gg~~VD~T~G~GGHS~~il~~~g~VigiD~Dp~Ai~~A~~L~~~rv~lv~~~f~~l~~~L~~~g~   87 (285)
T 1wg8_A           11 YQEALDLL---AVRPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALGV   87 (285)
T ss_dssp             HHHHHHHH---TCCTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTTC
T ss_pred             HHHHHHhh---CCCCCCEEEEeCCCCcHHHHHHHHCCCEEEEEeCCHHHHHHHHhhccCCEEEEECCcchHHHHHHHcCC
Confidence            45566666   3445789999999999999988  357999999998           25788888887653     223


Q ss_pred             CceeeEeecccc
Q psy10644        166 YSVDVAVFCLSL  177 (196)
Q Consensus       166 ~sfD~Vi~~~~l  177 (196)
                      ++||.|++.+.+
T Consensus        88 ~~vDgIL~DLGv   99 (285)
T 1wg8_A           88 ERVDGILADLGV   99 (285)
T ss_dssp             SCEEEEEEECSC
T ss_pred             CCcCEEEeCCcc
Confidence            579999986654

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=97.30  E-value=0.00013  Score=65.04  Aligned_cols=77  Identities=13%  Similarity=-0.083  Sum_probs=52.4

Q ss_pred             CEEEEEcCCCchhHhhc----c---------------CCeEEEEeCCC------------C----CceEEEecCCCC-CC
Q psy10644        120 LVIADLGCGEAKLAAEL----T---------------QHKVHSLDLVA------------L----NERVTSCDMTRT-PL  163 (196)
Q Consensus       120 ~~ILDlGCG~G~~a~~l----~---------------~~~v~giDls~------------~----~~~~~~~d~~~l-p~  163 (196)
                      .+|||.+||+|.+...+    .               ...++|+|+++            .    ++.+..+|.... .+
T Consensus       246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~~  325 (544)
T 3khk_A          246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQH  325 (544)
T ss_dssp             EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCSC
T ss_pred             CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCccc
Confidence            49999999999885543    1               45899999998            1    222256665433 34


Q ss_pred             CCCceeeEeecccccc-------------------------c-----CHHHHHHHHHHhccCC
Q psy10644        164 KPYSVDVAVFCLSLMG-------------------------T-----DLAACIKEANRILKLG  196 (196)
Q Consensus       164 ~~~sfD~Vi~~~~lh~-------------------------~-----d~~~~l~e~~rvLkpg  196 (196)
                      +...||+|+++--+..                         .     ....++..+.+.||||
T Consensus       326 ~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~g  388 (544)
T 3khk_A          326 PDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPT  388 (544)
T ss_dssp             TTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEE
T ss_pred             ccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccC
Confidence            5678999998643310                         0     1126899999999985

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=97.23  E-value=0.00046  Score=61.51  Aligned_cols=80  Identities=16%  Similarity=0.105  Sum_probs=57.0

Q ss_pred             CCCCEEEEEcCCCchhHhhc-------cCCeEEEEeCCC------------C-----CceEEEecCCCC--C-CCCCcee
Q psy10644        117 KGRLVIADLGCGEAKLAAEL-------TQHKVHSLDLVA------------L-----NERVTSCDMTRT--P-LKPYSVD  169 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l-------~~~~v~giDls~------------~-----~~~~~~~d~~~l--p-~~~~sfD  169 (196)
                      .++.+|+|.+||+|.+...+       ....++|+|+++            .     ++.+..+|....  | .+...||
T Consensus       220 ~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD  299 (542)
T 3lkd_A          220 KQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFD  299 (542)
T ss_dssp             CTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBS
T ss_pred             CCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceeccccccccccccc
Confidence            35789999999999886655       145899999998            1     346788887554  4 4567899


Q ss_pred             eEeecccc--cc---------------------c-CHHHHHHHHHHhcc-CC
Q psy10644        170 VAVFCLSL--MG---------------------T-DLAACIKEANRILK-LG  196 (196)
Q Consensus       170 ~Vi~~~~l--h~---------------------~-d~~~~l~e~~rvLk-pg  196 (196)
                      +|+++--+  .+                     . ....++..+.+.|| ||
T Consensus       300 ~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~g  351 (542)
T 3lkd_A          300 GVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDN  351 (542)
T ss_dssp             EEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTT
T ss_pred             EEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCc
Confidence            99976322  01                     0 11358999999999 75

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=96.88  E-value=0.00093  Score=54.77  Aligned_cols=32  Identities=16%  Similarity=0.040  Sum_probs=28.5

Q ss_pred             CCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC
Q psy10644        117 KGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA  148 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~  148 (196)
                      .++..|||++||+|.++..+  .+.+++|+|+++
T Consensus       234 ~~~~~vlD~f~GsGt~~~~a~~~g~~~~g~e~~~  267 (297)
T 2zig_A          234 FVGDVVLDPFAGTGTTLIAAARWGRRALGVELVP  267 (297)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCH
Confidence            45789999999999997777  678999999998

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=96.82  E-value=0.0037  Score=51.13  Aligned_cols=77  Identities=10%  Similarity=-0.017  Sum_probs=55.9

Q ss_pred             CCEEEEEcCCCchhHhhc----c-----CCeEEEEeCCC-----------------------------------------
Q psy10644        119 RLVIADLGCGEAKLAAEL----T-----QHKVHSLDLVA-----------------------------------------  148 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l----~-----~~~v~giDls~-----------------------------------------  148 (196)
                      ...|||+||..|..+..|    .     +.+|+++|..+                                         
T Consensus       107 pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~gl  186 (282)
T 2wk1_A          107 PGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYDL  186 (282)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTTC
T ss_pred             CCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcCC
Confidence            569999999999887665    1     57899999531                                         


Q ss_pred             --CCceEEEecCCC-CC-CCCCceeeEeecccccccCHHHHHHHHHHhccCC
Q psy10644        149 --LNERVTSCDMTR-TP-LKPYSVDVAVFCLSLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       149 --~~~~~~~~d~~~-lp-~~~~sfD~Vi~~~~lh~~d~~~~l~e~~rvLkpg  196 (196)
                        .++.++.+++.+ +| +++++||+|++-.-. +.....+|..+...|+||
T Consensus       187 ~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~-y~~~~~~Le~~~p~L~pG  237 (282)
T 2wk1_A          187 LDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDL-YESTWDTLTNLYPKVSVG  237 (282)
T ss_dssp             CSTTEEEEESCHHHHSTTCCCCCEEEEEECCCS-HHHHHHHHHHHGGGEEEE
T ss_pred             CcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCc-cccHHHHHHHHHhhcCCC
Confidence              357788888743 44 445789998876542 334567888888888886

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=96.76  E-value=0.0025  Score=59.18  Aligned_cols=60  Identities=23%  Similarity=0.271  Sum_probs=39.9

Q ss_pred             CCCEEEEEcCCCchhHhhc----c---CCeEEEEeCCCCC---------------------ceEEEecCCCC-CCCCCce
Q psy10644        118 GRLVIADLGCGEAKLAAEL----T---QHKVHSLDLVALN---------------------ERVTSCDMTRT-PLKPYSV  168 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l----~---~~~v~giDls~~~---------------------~~~~~~d~~~l-p~~~~sf  168 (196)
                      ++.+|||.|||+|.++..+    .   ..+++|+|+++..                     ..+...|+... +.....|
T Consensus       321 ~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~kF  400 (878)
T 3s1s_A          321 EDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFANV  400 (878)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTTE
T ss_pred             CCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCCC
Confidence            4679999999999987665    1   2479999999821                     12232333332 2345789


Q ss_pred             eeEeecccc
Q psy10644        169 DVAVFCLSL  177 (196)
Q Consensus       169 D~Vi~~~~l  177 (196)
                      |+|+++--+
T Consensus       401 DVVIgNPPY  409 (878)
T 3s1s_A          401 SVVVMNPPY  409 (878)
T ss_dssp             EEEEECCBC
T ss_pred             CEEEECCCc
Confidence            999986544

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=96.66  E-value=0.0017  Score=67.07  Aligned_cols=91  Identities=18%  Similarity=0.192  Sum_probs=40.7

Q ss_pred             HHHHHHHhhcCCCCCEEEEEcCCCchhHhhc----c-----CCeEEEEeCCCCC----------ceEEE--ecCCC-CCC
Q psy10644        106 IIIKSIQERESKGRLVIADLGCGEAKLAAEL----T-----QHKVHSLDLVALN----------ERVTS--CDMTR-TPL  163 (196)
Q Consensus       106 ~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l----~-----~~~v~giDls~~~----------~~~~~--~d~~~-lp~  163 (196)
                      .+++.+.+..+.+..+||+||.|+|..+..+    .     -.+++-.|+|+.-          ..+..  .|... .++
T Consensus      1228 ~~~~~~~~~~~~~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~di~~~~~d~~~~~~~ 1307 (2512)
T 2vz8_A         1228 ACVDTALENMASPKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLHVTQGQWDPANPAPG 1307 (2512)
T ss_dssp             HHHHHHHTTSSSSEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHTEEEECCCSSCCCC-
T ss_pred             HHHHHHHhcCCCCCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcccccccccccccccC
Confidence            3444444433334789999999999775554    1     1257777888721          11111  13322 234


Q ss_pred             CCCceeeEeeccccccc-CHHHHHHHHHHhccCC
Q psy10644        164 KPYSVDVAVFCLSLMGT-DLAACIKEANRILKLG  196 (196)
Q Consensus       164 ~~~sfD~Vi~~~~lh~~-d~~~~l~e~~rvLkpg  196 (196)
                      ..++||+|+++.+||.+ +....+.+++++||||
T Consensus      1308 ~~~~ydlvia~~vl~~t~~~~~~l~~~~~lL~p~ 1341 (2512)
T 2vz8_A         1308 SLGKADLLVCNCALATLGDPAVAVGNMAATLKEG 1341 (2512)
T ss_dssp             ----CCEEEEECC--------------------C
T ss_pred             CCCceeEEEEcccccccccHHHHHHHHHHhcCCC
Confidence            56789999999999977 8999999999999997

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=96.54  E-value=0.0047  Score=50.95  Aligned_cols=79  Identities=10%  Similarity=0.039  Sum_probs=52.1

Q ss_pred             CCCCEEEEEcC------CCchh-Hhhc-cC-CeEEEEeCCCC---CceEEEecCCCCCCCCCceeeEeeccccc--cc--
Q psy10644        117 KGRLVIADLGC------GEAKL-AAEL-TQ-HKVHSLDLVAL---NERVTSCDMTRTPLKPYSVDVAVFCLSLM--GT--  180 (196)
Q Consensus       117 ~~~~~ILDlGC------G~G~~-a~~l-~~-~~v~giDls~~---~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh--~~--  180 (196)
                      ..+++|||+|+      -.|.+ ++.+ +. ..|+++|+.+.   ...++++|+..+.. .+.||+|++-.+--  +.  
T Consensus       108 p~gmrVLDLGA~s~kg~APGS~VLr~~~p~g~~VVavDL~~~~sda~~~IqGD~~~~~~-~~k~DLVISDMAPNtTG~~D  186 (344)
T 3r24_A          108 PYNMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDFVSDADSTLIGDCATVHT-ANKWDLIISDMYDPRTKHVT  186 (344)
T ss_dssp             CTTCEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCCBCSSSEEEESCGGGEEE-SSCEEEEEECCCCTTSCSSC
T ss_pred             cCCCEEEeCCCCCCCCCCCcHHHHHHhCCCCcEEEEeeCcccccCCCeEEEcccccccc-CCCCCEEEecCCCCcCCccc
Confidence            34899999996      44544 2333 43 59999999982   22458899765433 57899999866541  11  


Q ss_pred             -------C-HHHHHHHHHHhccCC
Q psy10644        181 -------D-LAACIKEANRILKLG  196 (196)
Q Consensus       181 -------d-~~~~l~e~~rvLkpg  196 (196)
                             . .+.++.=+.++|+||
T Consensus       187 ~d~~Rs~~L~ElALdfA~~~LkpG  210 (344)
T 3r24_A          187 KENDSKEGFFTYLCGFIKQKLALG  210 (344)
T ss_dssp             SCCCCCCTHHHHHHHHHHHHEEEE
T ss_pred             cchhHHHHHHHHHHHHHHHhCcCC
Confidence                   1 344566667789886

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=96.40  E-value=0.013  Score=45.57  Aligned_cols=72  Identities=17%  Similarity=0.088  Sum_probs=49.6

Q ss_pred             CCEEEEEcCCCchhHhhc---cCCeEEEEeCCC-------------C-----CceEEEecCCCC---------------C
Q psy10644        119 RLVIADLGCGEAKLAAEL---TQHKVHSLDLVA-------------L-----NERVTSCDMTRT---------------P  162 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l---~~~~v~giDls~-------------~-----~~~~~~~d~~~l---------------p  162 (196)
                      ..+|||+|||  ..+..+   .+.+|+++|.++             .     ++.++.+|+...               +
T Consensus        31 a~~VLEiGtG--ySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l~  108 (202)
T 3cvo_A           31 AEVILEYGSG--GSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSYP  108 (202)
T ss_dssp             CSEEEEESCS--HHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGTT
T ss_pred             CCEEEEECch--HHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhHH
Confidence            5689999996  344444   367999999998             1     367888886432               2


Q ss_pred             --------C-CCCceeeEeecccccccCHHHHHHHHHHhccCC
Q psy10644        163 --------L-KPYSVDVAVFCLSLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       163 --------~-~~~sfD~Vi~~~~lh~~d~~~~l~e~~rvLkpg  196 (196)
                              . ..+.||+|+.-..    ....++..+.+.|+||
T Consensus       109 ~~~~~i~~~~~~~~fDlIfIDg~----k~~~~~~~~l~~l~~G  147 (202)
T 3cvo_A          109 DYPLAVWRTEGFRHPDVVLVDGR----FRVGCALATAFSITRP  147 (202)
T ss_dssp             HHHHGGGGCTTCCCCSEEEECSS----SHHHHHHHHHHHCSSC
T ss_pred             HHhhhhhccccCCCCCEEEEeCC----CchhHHHHHHHhcCCC
Confidence                    2 2368999887653    2236677777888887

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=95.83  E-value=0.0068  Score=51.61  Aligned_cols=78  Identities=15%  Similarity=0.093  Sum_probs=53.7

Q ss_pred             CCEEEEEcCCCchhHhhc---cCCeEEEEeCCC-----------------------CCceEEEecCCCC----CCCCCce
Q psy10644        119 RLVIADLGCGEAKLAAEL---TQHKVHSLDLVA-----------------------LNERVTSCDMTRT----PLKPYSV  168 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l---~~~~v~giDls~-----------------------~~~~~~~~d~~~l----p~~~~sf  168 (196)
                      ..+||=||.|.|..++.+   ...+|+.+|+++                       ++++++..|....    .-..+.|
T Consensus       206 pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~~y  285 (381)
T 3c6k_A          206 GKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGREF  285 (381)
T ss_dssp             TCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCCE
T ss_pred             CCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccCce
Confidence            468999999999999988   335899999998                       1245666665321    1134679


Q ss_pred             eeEeecccc-------ccc----CHHHHHHHHHHhccCC
Q psy10644        169 DVAVFCLSL-------MGT----DLAACIKEANRILKLG  196 (196)
Q Consensus       169 D~Vi~~~~l-------h~~----d~~~~l~e~~rvLkpg  196 (196)
                      |+|+.-..-       .+.    -...+++.++++|+||
T Consensus       286 DvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~  324 (381)
T 3c6k_A          286 DYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQD  324 (381)
T ss_dssp             EEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEE
T ss_pred             eEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCC
Confidence            999875321       111    1356788899999985

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=95.51  E-value=0.011  Score=49.60  Aligned_cols=71  Identities=8%  Similarity=0.076  Sum_probs=50.7

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC-----------CCceEEEecCCCCC--CC-
Q psy10644        104 VDIIIKSIQERESKGRLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA-----------LNERVTSCDMTRTP--LK-  164 (196)
Q Consensus       104 ~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~-----------~~~~~~~~d~~~lp--~~-  164 (196)
                      ++.+++.|   ...++..++|..||.|..+..+     +..+|+|+|.++           .++.++.++..++.  ++ 
T Consensus        46 l~Evl~~L---~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~rL~~~Rv~lv~~nF~~l~~~L~~  122 (347)
T 3tka_A           46 LDEAVNGL---NIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTIDDPRFSIIHGPFSALGEYVAE  122 (347)
T ss_dssp             THHHHHHT---CCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHTTCCCTTEEEEESCGGGHHHHHHH
T ss_pred             HHHHHHhh---CCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHhhcCCcEEEEeCCHHHHHHHHHh
Confidence            45555555   4456889999999999988877     245999999998           35667777765542  11 


Q ss_pred             ---CCceeeEeecccc
Q psy10644        165 ---PYSVDVAVFCLSL  177 (196)
Q Consensus       165 ---~~sfD~Vi~~~~l  177 (196)
                         .+++|.|++-+.+
T Consensus       123 ~g~~~~vDgILfDLGV  138 (347)
T 3tka_A          123 RDLIGKIDGILLDLGV  138 (347)
T ss_dssp             TTCTTCEEEEEEECSC
T ss_pred             cCCCCcccEEEECCcc
Confidence               1369999987765

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=95.50  E-value=0.014  Score=46.68  Aligned_cols=32  Identities=16%  Similarity=0.049  Sum_probs=28.0

Q ss_pred             CCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC
Q psy10644        117 KGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA  148 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~  148 (196)
                      .++..|||..||+|..+...  .+.+++|+|+++
T Consensus       211 ~~~~~vlD~f~GsGtt~~~a~~~gr~~ig~e~~~  244 (260)
T 1g60_A          211 NPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNA  244 (260)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCH
Confidence            45789999999999887776  688999999987

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=95.39  E-value=0.015  Score=51.49  Aligned_cols=81  Identities=19%  Similarity=0.188  Sum_probs=53.0

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc-----------------cCCeEEEEeCCC---------------CCceEEEecCCCCC
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL-----------------TQHKVHSLDLVA---------------LNERVTSCDMTRTP  162 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l-----------------~~~~v~giDls~---------------~~~~~~~~d~~~lp  162 (196)
                      .+..+.+|+|-.||+|.+....                 ....++|+|+.+               ....+..+|....|
T Consensus       214 ~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~I~~~dtL~~~  293 (530)
T 3ufb_A          214 DPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPRIDPENSLRFP  293 (530)
T ss_dssp             CCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCEEECSCTTCSC
T ss_pred             ccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCccccccccccccCc
Confidence            4455779999999999985433                 134799999998               23456666654444


Q ss_pred             C----CCCceeeEeeccccc--c-------------c-C-HHHHHHHHHHhccC
Q psy10644        163 L----KPYSVDVAVFCLSLM--G-------------T-D-LAACIKEANRILKL  195 (196)
Q Consensus       163 ~----~~~sfD~Vi~~~~lh--~-------------~-d-~~~~l~e~~rvLkp  195 (196)
                      +    +...||+|+++--+-  .             . + ...++..+.+.||+
T Consensus       294 ~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~  347 (530)
T 3ufb_A          294 LREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKR  347 (530)
T ss_dssp             GGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCC
T ss_pred             hhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhh
Confidence            3    235799999865441  0             0 1 23467788888873

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=95.08  E-value=0.032  Score=47.03  Aligned_cols=58  Identities=14%  Similarity=0.047  Sum_probs=42.0

Q ss_pred             HHHHHHHHHhhc---CCCCCEEEEEcCCCchhHhhcc----CCeEEEEeCCC------------CCceEEEecCCCC
Q psy10644        104 VDIIIKSIQERE---SKGRLVIADLGCGEAKLAAELT----QHKVHSLDLVA------------LNERVTSCDMTRT  161 (196)
Q Consensus       104 ~~~~~~~l~~~~---~~~~~~ILDlGCG~G~~a~~l~----~~~v~giDls~------------~~~~~~~~d~~~l  161 (196)
                      .+.|++.+.-..   ..++..|||||+|.|.+++.|.    ..+|+++++.+            .++.++.+|+..+
T Consensus        41 ~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~~~~l~ii~~D~l~~  117 (353)
T 1i4w_A           41 YNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYDW  117 (353)
T ss_dssp             HHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTCH
T ss_pred             HHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhccCCCEEEEECCccch
Confidence            455565553211   0035799999999999999993    45899999986            4788888998543

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=93.70  E-value=0.03  Score=47.23  Aligned_cols=59  Identities=20%  Similarity=0.130  Sum_probs=43.0

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC---------------------CCceEEEecCCCCC-CCCCce
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA---------------------LNERVTSCDMTRTP-LKPYSV  168 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~---------------------~~~~~~~~d~~~lp-~~~~sf  168 (196)
                      .+.++.+|||+.||.|.=+..|    .+..|+++|+++                     .++.+...|...++ ...+.|
T Consensus       145 ~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~f  224 (359)
T 4fzv_A          145 GLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTY  224 (359)
T ss_dssp             CCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCE
T ss_pred             CCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccC
Confidence            4566899999999999765554    334799999998                     14556666665543 456789


Q ss_pred             eeEee
Q psy10644        169 DVAVF  173 (196)
Q Consensus       169 D~Vi~  173 (196)
                      |.|++
T Consensus       225 D~VLl  229 (359)
T 4fzv_A          225 DRVLV  229 (359)
T ss_dssp             EEEEE
T ss_pred             CEEEE
Confidence            99985

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=92.74  E-value=0.13  Score=43.59  Aligned_cols=56  Identities=13%  Similarity=0.044  Sum_probs=43.0

Q ss_pred             CEEEEEcCCCchhHhhc--cCCe-EEEEeCCC----------CCceEEEecCCCCCC--------CCCceeeEeecc
Q psy10644        120 LVIADLGCGEAKLAAEL--TQHK-VHSLDLVA----------LNERVTSCDMTRTPL--------KPYSVDVAVFCL  175 (196)
Q Consensus       120 ~~ILDlGCG~G~~a~~l--~~~~-v~giDls~----------~~~~~~~~d~~~lp~--------~~~sfD~Vi~~~  175 (196)
                      .+++||-||.|.++.-+  .+.+ |.++|+++          ++..++.+|+..+..        ....+|+|+...
T Consensus         3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~ggp   79 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINFPRSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIGGP   79 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHCTTSEEECCCGGGCCHHHHHHHHCSCCCCCEEEECC
T ss_pred             CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhCCCCceEecChhhcCHHHHHhhcccCCCeeEEEecC
Confidence            58999999999998877  5664 66999988          456778889877631        346799998743

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=92.42  E-value=0.12  Score=42.63  Aligned_cols=77  Identities=13%  Similarity=0.099  Sum_probs=48.1

Q ss_pred             CCEEEEEcCCCchhHhh-c-------cCC--eEEEEeCCC---------------------------C--CceEEEecCC
Q psy10644        119 RLVIADLGCGEAKLAAE-L-------TQH--KVHSLDLVA---------------------------L--NERVTSCDMT  159 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~-l-------~~~--~v~giDls~---------------------------~--~~~~~~~d~~  159 (196)
                      ..+|||+|-|+|..+.. +       +..  +++++|-.+                           .  .+.+..+|+.
T Consensus        97 ~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa~  176 (308)
T 3vyw_A           97 VIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDAR  176 (308)
T ss_dssp             EEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCHH
T ss_pred             CcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechHH
Confidence            46899999999975322 1       222  567777543                           1  1245566663


Q ss_pred             C-CC-CCCCceeeEeeccccc-ccCH----HHHHHHHHHhccCC
Q psy10644        160 R-TP-LKPYSVDVAVFCLSLM-GTDL----AACIKEANRILKLG  196 (196)
Q Consensus       160 ~-lp-~~~~sfD~Vi~~~~lh-~~d~----~~~l~e~~rvLkpg  196 (196)
                      . ++ ++...||+|+. ..+- ..++    +.+|+.++++++||
T Consensus       177 ~~l~~l~~~~~Da~fl-DgFsP~kNPeLWs~e~f~~l~~~~~pg  219 (308)
T 3vyw_A          177 KRIKEVENFKADAVFH-DAFSPYKNPELWTLDFLSLIKERIDEK  219 (308)
T ss_dssp             HHGGGCCSCCEEEEEE-CCSCTTTSGGGGSHHHHHHHHTTEEEE
T ss_pred             HHHhhhcccceeEEEe-CCCCcccCcccCCHHHHHHHHHHhCCC
Confidence            3 33 44557999776 3331 1132    67999999999986

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=91.08  E-value=0.078  Score=44.22  Aligned_cols=57  Identities=16%  Similarity=0.211  Sum_probs=42.2

Q ss_pred             CCEEEEEcCCCchhHhhc--cC--C-eEEEEeCCC----------CCceEEEecCCCCCC---CCCceeeEeecc
Q psy10644        119 RLVIADLGCGEAKLAAEL--TQ--H-KVHSLDLVA----------LNERVTSCDMTRTPL---KPYSVDVAVFCL  175 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l--~~--~-~v~giDls~----------~~~~~~~~d~~~lp~---~~~sfD~Vi~~~  175 (196)
                      ..+++|+-||.|.+...+  .+  . .|.++|+++          ++..++.+|+..+..   +...+|+|+...
T Consensus         2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~~~~~~~Di~~~~~~~~~~~~~D~l~~gp   76 (343)
T 1g55_A            2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSP   76 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEECC
T ss_pred             CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccccccccCCHHHccHhHcCcCCcCEEEEcC
Confidence            458999999999998877  45  2 689999998          345677888877642   222589998754

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=88.01  E-value=1.6  Score=36.60  Aligned_cols=80  Identities=15%  Similarity=0.066  Sum_probs=49.6

Q ss_pred             cCCCCCEEEEEcCCC-chhHhhc---cCC-eEEEEeCCC--------CCceEEEecCCCCCC---------CCCceeeEe
Q psy10644        115 ESKGRLVIADLGCGE-AKLAAEL---TQH-KVHSLDLVA--------LNERVTSCDMTRTPL---------KPYSVDVAV  172 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~-G~~a~~l---~~~-~v~giDls~--------~~~~~~~~d~~~lp~---------~~~sfD~Vi  172 (196)
                      ...++.+||-+|||. |.++..+   .+. +|+++|.++        ....+  .|...-.+         ....||+|+
T Consensus       182 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~--i~~~~~~~~~~~~~~~~~g~g~Dvvi  259 (398)
T 2dph_A          182 GVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDAGFET--IDLRNSAPLRDQIDQILGKPEVDCGV  259 (398)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTTTCEE--EETTSSSCHHHHHHHHHSSSCEEEEE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcE--EcCCCcchHHHHHHHHhCCCCCCEEE
Confidence            445588999999975 6665555   466 899999887        22332  23222111         123699998


Q ss_pred             ecccccc---------cCHHHHHHHHHHhccCC
Q psy10644        173 FCLSLMG---------TDLAACIKEANRILKLG  196 (196)
Q Consensus       173 ~~~~lh~---------~d~~~~l~e~~rvLkpg  196 (196)
                      -+-.-..         .++...+.++.++|++|
T Consensus       260 d~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~g  292 (398)
T 2dph_A          260 DAVGFEAHGLGDEANTETPNGALNSLFDVVRAG  292 (398)
T ss_dssp             ECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEE
T ss_pred             ECCCCccccccccccccccHHHHHHHHHHHhcC
Confidence            7765321         12345788888888864

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=87.35  E-value=0.61  Score=38.32  Aligned_cols=34  Identities=12%  Similarity=0.083  Sum_probs=28.5

Q ss_pred             CCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCCC
Q psy10644        116 SKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVAL  149 (196)
Q Consensus       116 ~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~~  149 (196)
                      ..++..|||.=||+|..+...  .+.+.+|+|+++.
T Consensus       250 ~~~~~~VlDpF~GsGtt~~aa~~~gr~~ig~e~~~~  285 (323)
T 1boo_A          250 TEPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPE  285 (323)
T ss_dssp             CCTTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHcCCCEEEEeCCHH
Confidence            345889999999999886665  6889999999983

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=85.98  E-value=0.7  Score=38.19  Aligned_cols=56  Identities=21%  Similarity=0.058  Sum_probs=37.7

Q ss_pred             CCEEEEEcCCCchhHhhc--cCC-eEEEEeCCCC-------Cc-eEEEecCCCCCCC-CCceeeEeec
Q psy10644        119 RLVIADLGCGEAKLAAEL--TQH-KVHSLDLVAL-------NE-RVTSCDMTRTPLK-PYSVDVAVFC  174 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l--~~~-~v~giDls~~-------~~-~~~~~d~~~lp~~-~~sfD~Vi~~  174 (196)
                      +.+++|+-||.|.+...+  .+. .|.++|+++.       |. ....+|+..+... -..+|+|+..
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~~~~~~Di~~~~~~~~~~~D~l~~g   78 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEKPEGDITQVNEKTIPDHDILCAG   78 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCCCBSCGGGSCGGGSCCCSEEEEE
T ss_pred             CCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCCCcCCHHHcCHhhCCCCCEEEEC
Confidence            468999999999998877  455 5778999881       10 1115777654311 1248999874

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=85.93  E-value=3.5  Score=32.19  Aligned_cols=55  Identities=7%  Similarity=-0.086  Sum_probs=43.6

Q ss_pred             CEEEEEcCCCchhHhhc------cCCeEEEEeCCC--------CCceEEEecCCCCCCCCCceeeEeeccccc
Q psy10644        120 LVIADLGCGEAKLAAEL------TQHKVHSLDLVA--------LNERVTSCDMTRTPLKPYSVDVAVFCLSLM  178 (196)
Q Consensus       120 ~~ILDlGCG~G~~a~~l------~~~~v~giDls~--------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh  178 (196)
                      ++||=.||  |.++..+      .+++|++++.++        .++.++.+|+.++.  -..+|+|+.+.+..
T Consensus         6 ~~ilVtGa--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~--~~~~d~vi~~a~~~   74 (286)
T 3ius_A            6 GTLLSFGH--GYTARVLSRALAPQGWRIIGTSRNPDQMEAIRASGAEPLLWPGEEPS--LDGVTHLLISTAPD   74 (286)
T ss_dssp             CEEEEETC--CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHHTTEEEEESSSSCCC--CTTCCEEEECCCCB
T ss_pred             CcEEEECC--cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhhCCCeEEEecccccc--cCCCCEEEECCCcc
Confidence            57999995  8776666      578999999876        46788999998866  45789999888764

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=85.11  E-value=1.2  Score=36.62  Aligned_cols=33  Identities=15%  Similarity=0.051  Sum_probs=28.3

Q ss_pred             CCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC
Q psy10644        116 SKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA  148 (196)
Q Consensus       116 ~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~  148 (196)
                      ..++..|||.=||+|..+...  .+.+.+|+|+++
T Consensus       240 ~~~~~~vlDpF~GsGtt~~aa~~~~r~~ig~e~~~  274 (319)
T 1eg2_A          240 SHPGSTVLDFFAGSGVTARVAIQEGRNSICTDAAP  274 (319)
T ss_dssp             SCTTCEEEETTCTTCHHHHHHHHHTCEEEEEESST
T ss_pred             CCCCCEEEecCCCCCHHHHHHHHcCCcEEEEECCc
Confidence            345889999999999886665  689999999998

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=84.55  E-value=4  Score=33.99  Aligned_cols=80  Identities=18%  Similarity=0.110  Sum_probs=50.0

Q ss_pred             cCCCCCEEEEEcCCC-chhHhhc---cCC-eEEEEeCCC--------CCceEEEecCCCCC---------CCCCceeeEe
Q psy10644        115 ESKGRLVIADLGCGE-AKLAAEL---TQH-KVHSLDLVA--------LNERVTSCDMTRTP---------LKPYSVDVAV  172 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~-G~~a~~l---~~~-~v~giDls~--------~~~~~~~~d~~~lp---------~~~~sfD~Vi  172 (196)
                      ...++.+||-+|||. |.++..+   .+. .|+++|.++        ....++  |...-.         .....+|+|+
T Consensus       182 ~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~lGa~~i--~~~~~~~~~~~v~~~t~g~g~Dvvi  259 (398)
T 1kol_A          182 GVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIA--DLSLDTPLHEQIAALLGEPEVDCAV  259 (398)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEE--ETTSSSCHHHHHHHHHSSSCEEEEE
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHcCCcEE--ccCCcchHHHHHHHHhCCCCCCEEE
Confidence            344578999999865 5555554   466 799999987        233322  221111         1123699998


Q ss_pred             ecccc----------cccCHHHHHHHHHHhccCC
Q psy10644        173 FCLSL----------MGTDLAACIKEANRILKLG  196 (196)
Q Consensus       173 ~~~~l----------h~~d~~~~l~e~~rvLkpg  196 (196)
                      -+-.-          |..++...+.++.++|++|
T Consensus       260 d~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  293 (398)
T 1kol_A          260 DAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVA  293 (398)
T ss_dssp             ECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEE
T ss_pred             ECCCCcccccccccccccchHHHHHHHHHHHhcC
Confidence            76542          3345566888888888874

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=84.06  E-value=0.62  Score=38.58  Aligned_cols=55  Identities=7%  Similarity=0.152  Sum_probs=39.6

Q ss_pred             CCEEEEEcCCCchhHhhc--cC--C-eE-EEEeCCC----------CCceEEEecCCCCCC---CCCceeeEeec
Q psy10644        119 RLVIADLGCGEAKLAAEL--TQ--H-KV-HSLDLVA----------LNERVTSCDMTRTPL---KPYSVDVAVFC  174 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l--~~--~-~v-~giDls~----------~~~~~~~~d~~~lp~---~~~sfD~Vi~~  174 (196)
                      ..+++|+-||.|.+..-+  .+  . .| .++|+++          +. .++.+|+.++..   +...+|+++..
T Consensus        10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~-~~~~~DI~~~~~~~i~~~~~Dil~gg   83 (327)
T 3qv2_A           10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKE-EVQVKNLDSISIKQIESLNCNTWFMS   83 (327)
T ss_dssp             CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCC-CCBCCCTTTCCHHHHHHTCCCEEEEC
T ss_pred             CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCC-CcccCChhhcCHHHhccCCCCEEEec
Confidence            568999999999998777  44  2 45 6999998          22 256778877642   22368999864

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=84.03  E-value=3.2  Score=34.29  Aligned_cols=75  Identities=15%  Similarity=0.187  Sum_probs=48.8

Q ss_pred             CCEEEEEcCCCchhHhhcc----CCeEEEEeCCC-----------------------------------CCceEEEecCC
Q psy10644        119 RLVIADLGCGEAKLAAELT----QHKVHSLDLVA-----------------------------------LNERVTSCDMT  159 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l~----~~~v~giDls~-----------------------------------~~~~~~~~d~~  159 (196)
                      ...|+.||||....+..|.    +..++-+|.-.                                   .+..++.+|+.
T Consensus        98 ~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~DL~  177 (334)
T 1rjd_A           98 KVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDLN  177 (334)
T ss_dssp             SEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCTT
T ss_pred             CcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecCCC
Confidence            5789999999998888872    34666666522                                   23567778886


Q ss_pred             CCC--------C-CCCceeeEeeccccccc---CHHHHHHHHHHhc
Q psy10644        160 RTP--------L-KPYSVDVAVFCLSLMGT---DLAACIKEANRIL  193 (196)
Q Consensus       160 ~lp--------~-~~~sfD~Vi~~~~lh~~---d~~~~l~e~~rvL  193 (196)
                      +..        . ..+...++++-.+|++.   ....+|+.+.+.+
T Consensus       178 d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~  223 (334)
T 1rjd_A          178 DITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF  223 (334)
T ss_dssp             CHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC
T ss_pred             CcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC
Confidence            532        1 23456677777777765   3455666666544

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=82.52  E-value=4.9  Score=30.48  Aligned_cols=59  Identities=15%  Similarity=0.149  Sum_probs=41.2

Q ss_pred             CCEEEEEcCCCchhHhhc------cCCeEEEEeCCC--------CCc-eEEEecCC-CCCCCCCceeeEeeccccc
Q psy10644        119 RLVIADLGCGEAKLAAEL------TQHKVHSLDLVA--------LNE-RVTSCDMT-RTPLKPYSVDVAVFCLSLM  178 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l------~~~~v~giDls~--------~~~-~~~~~d~~-~lp~~~~sfD~Vi~~~~lh  178 (196)
                      +++||=.|+ +|.++..+      .+++|++++.++        .++ .++.+|+. .+.-.-+.+|+|+.+....
T Consensus        21 ~~~ilVtGa-tG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~D~vi~~ag~~   95 (236)
T 3e8x_A           21 GMRVLVVGA-NGKVARYLLSELKNKGHEPVAMVRNEEQGPELRERGASDIVVANLEEDFSHAFASIDAVVFAAGSG   95 (236)
T ss_dssp             CCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHTTCSEEEECCTTSCCGGGGTTCSEEEECCCCC
T ss_pred             CCeEEEECC-CChHHHHHHHHHHhCCCeEEEEECChHHHHHHHhCCCceEEEcccHHHHHHHHcCCCEEEECCCCC
Confidence            678998885 45554444      578999999887        367 88999985 2221124689999887763

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=82.34  E-value=2.3  Score=34.76  Aligned_cols=73  Identities=12%  Similarity=0.112  Sum_probs=42.5

Q ss_pred             cCCCCCEEEEEcCCC-chhHhhc---cCCeEEEEeCCCCC--------ceEEEecCCCCCCCCCceeeEeecccccccCH
Q psy10644        115 ESKGRLVIADLGCGE-AKLAAEL---TQHKVHSLDLVALN--------ERVTSCDMTRTPLKPYSVDVAVFCLSLMGTDL  182 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~-G~~a~~l---~~~~v~giDls~~~--------~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~~d~  182 (196)
                      ...++.+||-+|+|. |.++..+   .+.+|+++|.++.+        ...+..+.+.  +.. .+|+|+-+..--    
T Consensus       173 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~--~~~-~~D~vid~~g~~----  245 (348)
T 3two_A          173 KVTKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGVKHFYTDPKQ--CKE-ELDFIISTIPTH----  245 (348)
T ss_dssp             TCCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHTTCSEEESSGGG--CCS-CEEEEEECCCSC----
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCCCeecCCHHH--Hhc-CCCEEEECCCcH----
Confidence            345588999999864 5554444   57799999998832        2222222222  222 799988654421    


Q ss_pred             HHHHHHHHHhccC
Q psy10644        183 AACIKEANRILKL  195 (196)
Q Consensus       183 ~~~l~e~~rvLkp  195 (196)
                       ..+..+.++|+|
T Consensus       246 -~~~~~~~~~l~~  257 (348)
T 3two_A          246 -YDLKDYLKLLTY  257 (348)
T ss_dssp             -CCHHHHHTTEEE
T ss_pred             -HHHHHHHHHHhc
Confidence             134455556654

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=81.54  E-value=0.75  Score=38.14  Aligned_cols=55  Identities=15%  Similarity=0.239  Sum_probs=40.5

Q ss_pred             CEEEEEcCCCchhHhhc--cCC---eEEEEeCCC----------CCceEEEecCCCCC---CCCCceeeEeec
Q psy10644        120 LVIADLGCGEAKLAAEL--TQH---KVHSLDLVA----------LNERVTSCDMTRTP---LKPYSVDVAVFC  174 (196)
Q Consensus       120 ~~ILDlGCG~G~~a~~l--~~~---~v~giDls~----------~~~~~~~~d~~~lp---~~~~sfD~Vi~~  174 (196)
                      .+++|+=||.|.+..-+  .+.   -|.++|+++          +...++..|+..+.   ++...+|+++..
T Consensus         4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~~~~~~~DI~~~~~~~~~~~~~D~l~gg   76 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPETNLLNRNIQQLTPQVIKKWNVDTILMS   76 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECCCGGGCCHHHHHHTTCCEEEEC
T ss_pred             CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCCCceeccccccCCHHHhccCCCCEEEec
Confidence            57999999999998777  453   477999998          34556778887764   223368998864

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=80.76  E-value=1.1  Score=37.98  Aligned_cols=32  Identities=16%  Similarity=0.116  Sum_probs=26.6

Q ss_pred             CCCCEEEEEcCCCchhHhhcc------CCeEEEEeCCC
Q psy10644        117 KGRLVIADLGCGEAKLAAELT------QHKVHSLDLVA  148 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l~------~~~v~giDls~  148 (196)
                      .++..++|+||+.|.++..+.      ..+|++++.+|
T Consensus       225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p  262 (409)
T 2py6_A          225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDR  262 (409)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCH
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCH
Confidence            457899999999999877542      26999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	196
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.79
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.79
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.77
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.75
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.72
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.72
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.68
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.67
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.62
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.62
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.62
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.6
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.6
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.59
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.58
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.57
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.57
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.55
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.54
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.48
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.47
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.45
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.44
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.42
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.41
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.4
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.34
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.34
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.34
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.33
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.33
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.33
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.31
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.3
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.3
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.29
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.29
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.28
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.28
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.24
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.24
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.19
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.17
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.13
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.1
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.03
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.02
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.0
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	98.99
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	98.95
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	98.86
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	98.8
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	98.78
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	98.75
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	98.75
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	98.72
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	98.66
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	98.66
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	98.6
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	98.6
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	98.54
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.48
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	98.46
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	98.37
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.33
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	98.3
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	98.26
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	98.21
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	98.19
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	98.19
d2h00a1	250	Methyltransferase 10 domain containing protein MET	98.16
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	98.12
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.09
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	98.05
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.02
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	97.95
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	97.94
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	97.86
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	97.72
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	97.71
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	97.71
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	97.68
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	97.53
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	97.48
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	97.47
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	97.45
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	97.36
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	97.35
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	97.34
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	97.33
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	97.28
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	97.28
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	97.22
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	97.18
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	95.54
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	95.3
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	94.87
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	94.08
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	94.03
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	93.67
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	93.47
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	93.31
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	91.83
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	91.18
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	90.99
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	87.33
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	86.84
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	84.63
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	84.4
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	84.4
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	84.08
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	83.99
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	83.39
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	82.19
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	82.12
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	81.08
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	80.73
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	80.43

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.79  E-value=2.2e-19  Score=140.94  Aligned_cols=82  Identities=22%  Similarity=0.293  Sum_probs=73.7

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC---------------CCceEEEecCCCCCCCCCceeeEeecccc
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDVAVFCLSL  177 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l  177 (196)
                      ..+++.+|||||||+|.++..+  .+.+|+|+|+|+               .++.+.++|++++|+++++||+|++..++
T Consensus        12 ~l~~~~rVLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~fD~v~~~~~l   91 (231)
T d1vl5a_          12 ALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRIAA   91 (231)
T ss_dssp             TCCSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEEEEEESCG
T ss_pred             CCCCcCEEEEecccCcHHHHHHHHhCCEEEEEECCHHHHhhhhhcccccccccccccccccccccccccccccccccccc
Confidence            5556889999999999999888  567999999997               47889999999999999999999999999


Q ss_pred             ccc-CHHHHHHHHHHhccCC
Q psy10644        178 MGT-DLAACIKEANRILKLG  196 (196)
Q Consensus       178 h~~-d~~~~l~e~~rvLkpg  196 (196)
                      |+. |+..+|++++|+||||
T Consensus        92 ~~~~d~~~~l~~~~r~Lkpg  111 (231)
T d1vl5a_          92 HHFPNPASFVSEAYRVLKKG  111 (231)
T ss_dssp             GGCSCHHHHHHHHHHHEEEE
T ss_pred             cccCCHHHHHHHHHHhcCCC
Confidence            665 9999999999999997

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.79  E-value=2.7e-19  Score=141.37  Aligned_cols=82  Identities=20%  Similarity=0.274  Sum_probs=74.7

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC---------------CCceEEEecCCCCCCCCCceeeEeecccc
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDVAVFCLSL  177 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l  177 (196)
                      ..+++.+|||||||+|.++..+  .+.+|+|+|+|+               .++.+.++|++++|+++++||+|+|+.++
T Consensus        13 ~~~~~~rILDiGcGtG~~~~~la~~~~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l   92 (234)
T d1xxla_          13 ECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITCRYAA   92 (234)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEEEEEESCG
T ss_pred             CCCCCCEEEEeCCcCcHHHHHHHHhCCeEEEEeCChhhhhhhhhhhcccccccccccccccccccccccccceeeeecee
Confidence            5566899999999999999999  456999999997               47899999999999999999999999999


Q ss_pred             ccc-CHHHHHHHHHHhccCC
Q psy10644        178 MGT-DLAACIKEANRILKLG  196 (196)
Q Consensus       178 h~~-d~~~~l~e~~rvLkpg  196 (196)
                      |+. |+..+|++++|+||||
T Consensus        93 ~~~~d~~~~l~~~~r~Lkpg  112 (234)
T d1xxla_          93 HHFSDVRKAVREVARVLKQD  112 (234)
T ss_dssp             GGCSCHHHHHHHHHHHEEEE
T ss_pred             ecccCHHHHHHHHHHeeCCC
Confidence            655 9999999999999996

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.77  E-value=5e-19  Score=139.49  Aligned_cols=80  Identities=19%  Similarity=0.150  Sum_probs=69.7

Q ss_pred             CCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC---------CCceEEEecCCCCCCCCCceeeEeecc-cccc-cCHH
Q psy10644        117 KGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA---------LNERVTSCDMTRTPLKPYSVDVAVFCL-SLMG-TDLA  183 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~---------~~~~~~~~d~~~lp~~~~sfD~Vi~~~-~lh~-~d~~  183 (196)
                      .++.+|||||||+|.++..|  .+++|+|+|+|+         ....++.+|++++|+++++||+|++.. ++|+ .|+.
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~d~~  120 (246)
T d2avna1          41 KNPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVENKD  120 (246)
T ss_dssp             CSCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSCHH
T ss_pred             CCCCEEEEECCCCchhcccccccceEEEEeecccccccccccccccccccccccccccccccccceeeecchhhhhhhHH
Confidence            35679999999999999999  567999999999         244678899999999999999999864 6754 4999


Q ss_pred             HHHHHHHHhccCC
Q psy10644        184 ACIKEANRILKLG  196 (196)
Q Consensus       184 ~~l~e~~rvLkpg  196 (196)
                      ++|++++|+||||
T Consensus       121 ~~l~~i~r~Lk~g  133 (246)
T d2avna1         121 KAFSEIRRVLVPD  133 (246)
T ss_dssp             HHHHHHHHHEEEE
T ss_pred             HHHHHHHhhcCcC
Confidence            9999999999997

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.75  E-value=3.6e-18  Score=132.18  Aligned_cols=84  Identities=24%  Similarity=0.243  Sum_probs=72.7

Q ss_pred             HHHHhhcCCCCCEEEEEcCCCchhHhhccCCeEEEEeCCC--------CCceEEEecCCCCCCCCCceeeEeeccccccc
Q psy10644        109 KSIQERESKGRLVIADLGCGEAKLAAELTQHKVHSLDLVA--------LNERVTSCDMTRTPLKPYSVDVAVFCLSLMGT  180 (196)
Q Consensus       109 ~~l~~~~~~~~~~ILDlGCG~G~~a~~l~~~~v~giDls~--------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~~  180 (196)
                      +.+....+  +.+|||||||+|.++..+.  +++|+|+|+        .++.++++|++++|+++++||+|++..+||+.
T Consensus        29 ~~~~~~~~--~~~vLDiGcG~G~~~~~~~--~~~giD~s~~~~~~a~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~h~  104 (208)
T d1vlma_          29 QAVKCLLP--EGRGVEIGVGTGRFAVPLK--IKIGVEPSERMAEIARKRGVFVLKGTAENLPLKDESFDFALMVTTICFV  104 (208)
T ss_dssp             HHHHHHCC--SSCEEEETCTTSTTHHHHT--CCEEEESCHHHHHHHHHTTCEEEECBTTBCCSCTTCEEEEEEESCGGGS
T ss_pred             HHHHhhCC--CCeEEEECCCCcccccccc--eEEEEeCChhhcccccccccccccccccccccccccccccccccccccc
Confidence            34444444  5689999999999998884  478999999        57899999999999999999999999999554


Q ss_pred             -CHHHHHHHHHHhccCC
Q psy10644        181 -DLAACIKEANRILKLG  196 (196)
Q Consensus       181 -d~~~~l~e~~rvLkpg  196 (196)
                       |+.++|++++|+||||
T Consensus       105 ~d~~~~l~~~~~~L~pg  121 (208)
T d1vlma_         105 DDPERALKEAYRILKKG  121 (208)
T ss_dssp             SCHHHHHHHHHHHEEEE
T ss_pred             cccccchhhhhhcCCCC
Confidence             9999999999999996

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.72  E-value=8.7e-18  Score=136.25  Aligned_cols=82  Identities=21%  Similarity=0.140  Sum_probs=73.8

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc---cCCeEEEEeCCC----------------CCceEEEecCCCCCCCCCceeeEeecc
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL---TQHKVHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAVFCL  175 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l---~~~~v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~  175 (196)
                      ...++.+|||||||+|.++..|   .+++|+|+|+|+                .++.+..+|++++|+++++||+|++..
T Consensus        64 ~l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~~sfD~V~~~~  143 (282)
T d2o57a1          64 VLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQD  143 (282)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEES
T ss_pred             CCCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhcccccccccccccccccccccccccccccchhhccc
Confidence            3456899999999999998888   467999999998                368899999999999999999999999


Q ss_pred             cc-cccCHHHHHHHHHHhccCC
Q psy10644        176 SL-MGTDLAACIKEANRILKLG  196 (196)
Q Consensus       176 ~l-h~~d~~~~l~e~~rvLkpg  196 (196)
                      ++ |..++..+|++++|+||||
T Consensus       144 ~l~h~~d~~~~l~~~~~~Lkpg  165 (282)
T d2o57a1         144 AFLHSPDKLKVFQECARVLKPR  165 (282)
T ss_dssp             CGGGCSCHHHHHHHHHHHEEEE
T ss_pred             hhhhccCHHHHHHHHHHhcCCC
Confidence            99 5559999999999999997

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.72  E-value=8.4e-18  Score=130.71  Aligned_cols=80  Identities=25%  Similarity=0.348  Sum_probs=71.1

Q ss_pred             CCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC--------------CCceEEEecCCCCCCCCCceeeEeecccccc-
Q psy10644        117 KGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA--------------LNERVTSCDMTRTPLKPYSVDVAVFCLSLMG-  179 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~--------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~-  179 (196)
                      +++.+|||||||+|.++..+  .+.+|+|+|+|+              ..+.++.+|+.++|+++++||+|++..++|+ 
T Consensus        36 ~~~~~ILDiGcG~G~~~~~la~~~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~~~  115 (226)
T d1ve3a1          36 KKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHF  115 (226)
T ss_dssp             CSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGGC
T ss_pred             CCCCEEEEECCCcchhhhhHhhhhcccccccccccchhhhhhhhccccccccccccccccccccCcCceEEEEecchhhC
Confidence            34789999999999999999  567999999998              3577889999999999999999999999954 


Q ss_pred             c--CHHHHHHHHHHhccCC
Q psy10644        180 T--DLAACIKEANRILKLG  196 (196)
Q Consensus       180 ~--d~~~~l~e~~rvLkpg  196 (196)
                      .  ++.++|++++|+||||
T Consensus       116 ~~~d~~~~l~~i~~~Lkpg  134 (226)
T d1ve3a1         116 EPLELNQVFKEVRRVLKPS  134 (226)
T ss_dssp             CHHHHHHHHHHHHHHEEEE
T ss_pred             ChhHHHHHHHHHHHHcCcC
Confidence            3  7888999999999997

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.68  E-value=6.6e-17  Score=128.00  Aligned_cols=90  Identities=23%  Similarity=0.309  Sum_probs=73.7

Q ss_pred             HHHHHHHhhcCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC--------------CCceEEEecCCCCCCCCCcee
Q psy10644        106 IIIKSIQERESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA--------------LNERVTSCDMTRTPLKPYSVD  169 (196)
Q Consensus       106 ~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~--------------~~~~~~~~d~~~lp~~~~sfD  169 (196)
                      .+.+.+......+..+|||||||+|.++..|  .+.+|+|+|+|+              .++.++++|+++++++ ++||
T Consensus        29 ~~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~-~~fD  107 (251)
T d1wzna1          29 FVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFK-NEFD  107 (251)
T ss_dssp             HHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCC-SCEE
T ss_pred             HHHHHHHHhcCCCCCEEEEeCCCCCccchhhcccceEEEEEeeccccccccccccccccccchheehhhhhcccc-cccc
Confidence            3444555555556779999999999999888  567999999998              3689999999999987 5899


Q ss_pred             eEeecc-ccccc---CHHHHHHHHHHhccCC
Q psy10644        170 VAVFCL-SLMGT---DLAACIKEANRILKLG  196 (196)
Q Consensus       170 ~Vi~~~-~lh~~---d~~~~l~e~~rvLkpg  196 (196)
                      +|+|.. ++++.   +..++|++++++||||
T Consensus       108 ~I~~~~~~~~~~~~~~~~~~L~~~~~~Lkpg  138 (251)
T d1wzna1         108 AVTMFFSTIMYFDEEDLRKLFSKVAEALKPG  138 (251)
T ss_dssp             EEEECSSGGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred             hHhhhhhhhhcCChHHHHHHHHHHHHHcCCC
Confidence            999875 55433   6779999999999997

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.67  E-value=6.3e-17  Score=128.44  Aligned_cols=81  Identities=19%  Similarity=0.129  Sum_probs=71.0

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc---cCCeEEEEeCCC----------------CCceEEEecCCCCCCCCCceeeEeecc
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL---TQHKVHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAVFCL  175 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l---~~~~v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~  175 (196)
                      ...++.+|||||||+|.++..+   .+++|+|+|+|+                .++.++.+|+.++ +++++||+|++..
T Consensus        30 ~l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~-~~~~~fD~v~~~~  108 (245)
T d1nkva_          30 RMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY-VANEKCDVAACVG  108 (245)
T ss_dssp             CCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC-CCSSCEEEEEEES
T ss_pred             CCCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhc-cccCceeEEEEEe
Confidence            4455899999999999998888   467999999998                3489999999887 4689999999999


Q ss_pred             cccc-cCHHHHHHHHHHhccCC
Q psy10644        176 SLMG-TDLAACIKEANRILKLG  196 (196)
Q Consensus       176 ~lh~-~d~~~~l~e~~rvLkpg  196 (196)
                      ++|+ .|+..++++++|+||||
T Consensus       109 ~~~~~~d~~~~l~~~~r~LkPG  130 (245)
T d1nkva_         109 ATWIAGGFAGAEELLAQSLKPG  130 (245)
T ss_dssp             CGGGTSSSHHHHHHHTTSEEEE
T ss_pred             hhhccCCHHHHHHHHHHHcCcC
Confidence            9954 49999999999999997

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.62  E-value=6.3e-16  Score=124.71  Aligned_cols=87  Identities=22%  Similarity=0.352  Sum_probs=74.1

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC----------CCceEEEecCCCCCCCCCcee
Q psy10644        104 VDIIIKSIQERESKGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA----------LNERVTSCDMTRTPLKPYSVD  169 (196)
Q Consensus       104 ~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~----------~~~~~~~~d~~~lp~~~~sfD  169 (196)
                      .+.++..+....+.++.+|||||||+|.++..|    ++.+|+|+|+|+          .++.+.++|+.++|+++++||
T Consensus        70 ~~~~~~~l~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD  149 (268)
T d1p91a_          70 RDAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMD  149 (268)
T ss_dssp             HHHHHHHHHHHSCTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEE
T ss_pred             HHHHHHHHHHhcCCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccccccceeeehhhccCCCCCEE
Confidence            455556666666667889999999999988777    456999999998          688999999999999999999


Q ss_pred             eEeecccccccCHHHHHHHHHHhccCC
Q psy10644        170 VAVFCLSLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       170 ~Vi~~~~lh~~d~~~~l~e~~rvLkpg  196 (196)
                      +|++.+++|.      ++|++|+||||
T Consensus       150 ~v~~~~~~~~------~~e~~rvLkpg  170 (268)
T d1p91a_         150 AIIRIYAPCK------AEELARVVKPG  170 (268)
T ss_dssp             EEEEESCCCC------HHHHHHHEEEE
T ss_pred             EEeecCCHHH------HHHHHHHhCCC
Confidence            9999988854      57899999997

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.62  E-value=5.6e-16  Score=121.58  Aligned_cols=77  Identities=18%  Similarity=0.177  Sum_probs=68.0

Q ss_pred             CCEEEEEcCCCchhHhhc--cCCeEEEEeCCC-----------CCceEEEecCCCCCCCCCceeeEeecccccc-cCHHH
Q psy10644        119 RLVIADLGCGEAKLAAEL--TQHKVHSLDLVA-----------LNERVTSCDMTRTPLKPYSVDVAVFCLSLMG-TDLAA  184 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l--~~~~v~giDls~-----------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~-~d~~~  184 (196)
                      +.+|||||||+|.++..|  .+.+|+|+|+|+           .++.++.++++.+++ +++||+|++..+||+ .|+..
T Consensus        21 ~~~VLDiGcG~G~~~~~l~~~g~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~~-~~~fD~I~~~~vleh~~d~~~   99 (225)
T d2p7ia1          21 PGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLKDGITYIHSRFEDAQL-PRRYDNIVLTHVLEHIDDPVA   99 (225)
T ss_dssp             SSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCC-SSCEEEEEEESCGGGCSSHHH
T ss_pred             CCcEEEEeCCCcHHHHHHHHcCCeEEEEeCcHHHhhhhhccccccccccccccccccc-ccccccccccceeEecCCHHH
Confidence            568999999999999999  456999999998           468899999988876 579999999999955 59999


Q ss_pred             HHHHHH-HhccCC
Q psy10644        185 CIKEAN-RILKLG  196 (196)
Q Consensus       185 ~l~e~~-rvLkpg  196 (196)
                      +|.+++ |+||||
T Consensus       100 ~l~~i~~~~Lk~g  112 (225)
T d2p7ia1         100 LLKRINDDWLAEG  112 (225)
T ss_dssp             HHHHHHHTTEEEE
T ss_pred             HHHHHHHHhcCCC
Confidence            999998 799986

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.62  E-value=3.9e-16  Score=125.12  Aligned_cols=88  Identities=18%  Similarity=0.218  Sum_probs=73.4

Q ss_pred             HHHHhhcCCCCCEEEEEcCCCchhHhhc---cCCeEEEEeCCC-------------CCceEEEecCCCCCCCCCceeeEe
Q psy10644        109 KSIQERESKGRLVIADLGCGEAKLAAEL---TQHKVHSLDLVA-------------LNERVTSCDMTRTPLKPYSVDVAV  172 (196)
Q Consensus       109 ~~l~~~~~~~~~~ILDlGCG~G~~a~~l---~~~~v~giDls~-------------~~~~~~~~d~~~lp~~~~sfD~Vi  172 (196)
                      ..|...+..+..+|||+|||+|.++..|   ....|+++|+|+             .++++.++|++++++++++||+|+
T Consensus        84 ~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I~  163 (254)
T d1xtpa_          84 NFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIV  163 (254)
T ss_dssp             HHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEE
T ss_pred             HHHhhCCCCCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCccceEE
Confidence            4455555566789999999999999876   245899999998             346889999999999999999999


Q ss_pred             eccccccc-C--HHHHHHHHHHhccCC
Q psy10644        173 FCLSLMGT-D--LAACIKEANRILKLG  196 (196)
Q Consensus       173 ~~~~lh~~-d--~~~~l~e~~rvLkpg  196 (196)
                      +..++|+. +  ...+|++++++||||
T Consensus       164 ~~~vl~hl~d~d~~~~l~~~~~~Lkpg  190 (254)
T d1xtpa_         164 IQWTAIYLTDADFVKFFKHCQQALTPN  190 (254)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred             eeccccccchhhhHHHHHHHHHhcCCC
Confidence            99999544 4  468999999999986

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.60  E-value=1.3e-15  Score=120.53  Aligned_cols=90  Identities=27%  Similarity=0.343  Sum_probs=70.9

Q ss_pred             HHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC--------------CCceEEEecCCCCCCCCCce
Q psy10644        105 DIIIKSIQERESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA--------------LNERVTSCDMTRTPLKPYSV  168 (196)
Q Consensus       105 ~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~--------------~~~~~~~~d~~~lp~~~~sf  168 (196)
                      +.+++.+....+ ++.+|||||||+|.++..|  .+.+|+|+|+|+              .++.++++|+.++++ +++|
T Consensus        25 ~~~~~~~~~~~~-~~~~vLDiGCG~G~~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~-~~~f  102 (246)
T d1y8ca_          25 DFIIEKCVENNL-VFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNI-NRKF  102 (246)
T ss_dssp             HHHHHHHHTTTC-CTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCC-SCCE
T ss_pred             HHHHHHHHHhCC-CCCeEEEEeCcCCHHHHHHHHhCCccEeeccchhhhhhccccccccCccceeeccchhhhcc-cccc
Confidence            334455544332 3578999999999999999  567999999998              378999999998886 4689


Q ss_pred             eeEeec-ccc-ccc---CHHHHHHHHHHhccCC
Q psy10644        169 DVAVFC-LSL-MGT---DLAACIKEANRILKLG  196 (196)
Q Consensus       169 D~Vi~~-~~l-h~~---d~~~~l~e~~rvLkpg  196 (196)
                      |+|+|. .++ |..   ++..+|++++++||||
T Consensus       103 D~i~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg  135 (246)
T d1y8ca_         103 DLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEG  135 (246)
T ss_dssp             EEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEE
T ss_pred             cccceeeeeeeccCCHHHHHHHHHHHHHhCCCC
Confidence            999986 455 332   6778999999999996

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.60  E-value=6.2e-16  Score=125.47  Aligned_cols=79  Identities=22%  Similarity=0.262  Sum_probs=68.4

Q ss_pred             CCCCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC--------------CCceEEEecCCCCCCCCCceeeEeecccc
Q psy10644        117 KGRLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA--------------LNERVTSCDMTRTPLKPYSVDVAVFCLSL  177 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~--------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l  177 (196)
                      .++.+|||||||+|.++..|     .+.+|+|+|+|+              .++.+.++|+.+++++ ++||+|++..++
T Consensus        26 ~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~~-~~fD~v~~~~~l  104 (281)
T d2gh1a1          26 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELN-DKYDIAICHAFL  104 (281)
T ss_dssp             CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCS-SCEEEEEEESCG
T ss_pred             CCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccccccccccccccccccc-CCceEEEEehhh
Confidence            34679999999999998777     246899999997              2578899999998875 579999999999


Q ss_pred             ccc-CHHHHHHHHHHhccCC
Q psy10644        178 MGT-DLAACIKEANRILKLG  196 (196)
Q Consensus       178 h~~-d~~~~l~e~~rvLkpg  196 (196)
                      |+. |+..+|++++|+||||
T Consensus       105 ~~~~d~~~~l~~~~~~Lkpg  124 (281)
T d2gh1a1         105 LHMTTPETMLQKMIHSVKKG  124 (281)
T ss_dssp             GGCSSHHHHHHHHHHTEEEE
T ss_pred             hcCCCHHHHHHHHHHHcCcC
Confidence            655 9999999999999997

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=6.9e-16  Score=120.72  Aligned_cols=80  Identities=20%  Similarity=0.270  Sum_probs=68.5

Q ss_pred             CCCCEEEEEcCCCchhHhhc---cCCeEEEEeCCC---------------CCceEEEecCCCCCCCCCceeeEeeccccc
Q psy10644        117 KGRLVIADLGCGEAKLAAEL---TQHKVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDVAVFCLSLM  178 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l---~~~~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh  178 (196)
                      .++.+|||||||+|.++..+   ...+|+|+|+|+               .++.+.++|++++++++++||+|++..++|
T Consensus        59 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~l~  138 (222)
T d2ex4a1          59 TGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG  138 (222)
T ss_dssp             CCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred             CCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhccccccccccccccccccccccccccccccccccccccccc
Confidence            34679999999999999876   234899999998               246889999999999999999999999996


Q ss_pred             cc-C--HHHHHHHHHHhccCC
Q psy10644        179 GT-D--LAACIKEANRILKLG  196 (196)
Q Consensus       179 ~~-d--~~~~l~e~~rvLkpg  196 (196)
                      +. +  ..+++++++++||||
T Consensus       139 h~~~~~~~~~l~~i~~~Lk~~  159 (222)
T d2ex4a1         139 HLTDQHLAEFLRRCKGSLRPN  159 (222)
T ss_dssp             GSCHHHHHHHHHHHHHHEEEE
T ss_pred             cchhhhhhhHHHHHHHhcCCc
Confidence            55 3  458999999999986

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.58  E-value=9.3e-15  Score=114.30  Aligned_cols=78  Identities=14%  Similarity=0.192  Sum_probs=62.2

Q ss_pred             CCCCEEEEEcCCCchhHhhc------cCCeEEEEeCCC----------------CCceEEEecCCCCCCCCCceeeEeec
Q psy10644        117 KGRLVIADLGCGEAKLAAEL------TQHKVHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAVFC  174 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l------~~~~v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~  174 (196)
                      +++.+|||||||+|..+..|      ++.+|+|+|+|+                .++.+...|+.+  ++.+.+|+|+++
T Consensus        38 ~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~--~~~~~~d~i~~~  115 (225)
T d1im8a_          38 TADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRH--VEIKNASMVILN  115 (225)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTT--CCCCSEEEEEEE
T ss_pred             CCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhc--cccccceeeEEe
Confidence            45789999999999987665      356999999998                234445555544  455689999999


Q ss_pred             cccccc---CHHHHHHHHHHhccCC
Q psy10644        175 LSLMGT---DLAACIKEANRILKLG  196 (196)
Q Consensus       175 ~~lh~~---d~~~~l~e~~rvLkpg  196 (196)
                      .++|+.   ++..+|++++|+||||
T Consensus       116 ~~l~~~~~~d~~~~l~~i~~~Lkpg  140 (225)
T d1im8a_         116 FTLQFLPPEDRIALLTKIYEGLNPN  140 (225)
T ss_dssp             SCGGGSCGGGHHHHHHHHHHHEEEE
T ss_pred             eeccccChhhHHHHHHHHHHhCCCC
Confidence            999654   8899999999999997

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.57  E-value=3.8e-15  Score=114.43  Aligned_cols=77  Identities=21%  Similarity=0.211  Sum_probs=67.0

Q ss_pred             CCEEEEEcCCCchhHhhc--cCCeEEEEeCCC---------------CCceEEEecCCCCCCCCCceeeEeeccccccc-
Q psy10644        119 RLVIADLGCGEAKLAAEL--TQHKVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDVAVFCLSLMGT-  180 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l--~~~~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~~-  180 (196)
                      +.+|||||||+|..+..|  .+.+|+|+|+|+               .++.+...|+..+++ +++||+|++..++|+. 
T Consensus        31 ~grvLDiGcG~G~~~~~la~~g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~I~~~~~~~~~~  109 (198)
T d2i6ga1          31 PGRTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTF-DGEYDFILSTVVMMFLE  109 (198)
T ss_dssp             SCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCC-CCCEEEEEEESCGGGSC
T ss_pred             CCcEEEECCCCCHHHHHHHHHhhhhccccCcHHHHHHHHHHhhhccccchhhhheecccccc-cccccEEEEeeeeecCC
Confidence            459999999999999999  677999999998               357888899988775 6789999999999654 


Q ss_pred             --CHHHHHHHHHHhccCC
Q psy10644        181 --DLAACIKEANRILKLG  196 (196)
Q Consensus       181 --d~~~~l~e~~rvLkpg  196 (196)
                        +..++|++++++||||
T Consensus       110 ~~~~~~~l~~~~~~L~pg  127 (198)
T d2i6ga1         110 AQTIPGLIANMQRCTKPG  127 (198)
T ss_dssp             TTHHHHHHHHHHHTEEEE
T ss_pred             HHHHHHHHHHHHHHcCCC
Confidence              4678999999999986

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.57  E-value=1.8e-15  Score=114.64  Aligned_cols=88  Identities=7%  Similarity=-0.048  Sum_probs=71.7

Q ss_pred             HHHHhhcCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC---------------------------CCceEEEecCC
Q psy10644        109 KSIQERESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA---------------------------LNERVTSCDMT  159 (196)
Q Consensus       109 ~~l~~~~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~---------------------------~~~~~~~~d~~  159 (196)
                      +++..+...++.+|||+|||+|..+..|  .+++|+|+|+|+                           ..+.+..+|+.
T Consensus        11 ~~~~~l~~~~~~rvLd~GCG~G~~a~~la~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~   90 (201)
T d1pjza_          11 QYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFF   90 (201)
T ss_dssp             HHHHHHCCCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCS
T ss_pred             HHHHHcCCCCCCEEEEecCcCCHHHHHHHHcCCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccc
Confidence            3344445566899999999999999999  788999999997                           23467888887


Q ss_pred             CCCC-CCCceeeEeeccccccc---CHHHHHHHHHHhccCC
Q psy10644        160 RTPL-KPYSVDVAVFCLSLMGT---DLAACIKEANRILKLG  196 (196)
Q Consensus       160 ~lp~-~~~sfD~Vi~~~~lh~~---d~~~~l~e~~rvLkpg  196 (196)
                      .++. ....||+|++..++|+.   +...++++++++||||
T Consensus        91 ~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~Lkpg  131 (201)
T d1pjza_          91 ALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQA  131 (201)
T ss_dssp             SSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSE
T ss_pred             ccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCC
Confidence            7653 45789999999999654   5788999999999996

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=8.5e-15  Score=115.05  Aligned_cols=110  Identities=14%  Similarity=0.109  Sum_probs=81.5

Q ss_pred             HHHHHHHhhhhcCCC-ChHHHHHHHHHhh-cCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC--------------
Q psy10644         87 AYHEGFKKQVTQWPI-NPVDIIIKSIQER-ESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA--------------  148 (196)
Q Consensus        87 ~y~~~y~~~~~~w~~-~~~~~~~~~l~~~-~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~--------------  148 (196)
                      .+...|.+.--.|.. .+...+++.+... ...++.+|||+|||+|..+..|  .|++|+|+|+|+              
T Consensus        12 ~W~~~~~~~~~~w~~~~~~~~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~G~~V~gvD~S~~ai~~a~~~~~~~~   91 (229)
T d2bzga1          12 EWQDKWVNGKTAFHQEQGHQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADRGHSVVGVEISELGIQEFFTEQNLSY   91 (229)
T ss_dssp             HHHHHHHHTCCTTCCTTCCHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCE
T ss_pred             HHHHHHccCCCCCccCCCCHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhhccc
Confidence            344445443224532 3444555555432 3445789999999999999999  788999999998              


Q ss_pred             ------------------CCceEEEecCCCC-CCCCCceeeEeeccccccc---CHHHHHHHHHHhccCC
Q psy10644        149 ------------------LNERVTSCDMTRT-PLKPYSVDVAVFCLSLMGT---DLAACIKEANRILKLG  196 (196)
Q Consensus       149 ------------------~~~~~~~~d~~~l-p~~~~sfD~Vi~~~~lh~~---d~~~~l~e~~rvLkpg  196 (196)
                                        .++.+.++|+..+ +...+.||+|+...++|+.   +...+++++.++||||
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~Lkpg  161 (229)
T d2bzga1          92 SEEPITEIPGTKVFKSSSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKK  161 (229)
T ss_dssp             EEEECTTSTTCEEEEETTSSEEEEESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEE
T ss_pred             cccchhcccccceeeecCCcEEEEEcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCc
Confidence                              1567888888776 4567899999999999543   7889999999999997

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.54  E-value=7.7e-15  Score=116.81  Aligned_cols=80  Identities=19%  Similarity=0.194  Sum_probs=66.2

Q ss_pred             CCCCEEEEEcCCCchhHhhc--cC-CeEEEEeCCC----------------CCceEEEecCCCCCC-CCCceeeEeeccc
Q psy10644        117 KGRLVIADLGCGEAKLAAEL--TQ-HKVHSLDLVA----------------LNERVTSCDMTRTPL-KPYSVDVAVFCLS  176 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l--~~-~~v~giDls~----------------~~~~~~~~d~~~lp~-~~~sfD~Vi~~~~  176 (196)
                      +++.+|||||||+|..+..+  .+ .+|+|+|+|+                .++.+.++|+...++ .+++||+|+|..+
T Consensus        23 ~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~~  102 (252)
T d1ri5a_          23 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFS  102 (252)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESC
T ss_pred             CCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEcce
Confidence            45789999999999887777  34 4899999999                257789999977665 4678999999999


Q ss_pred             cccc-----CHHHHHHHHHHhccCC
Q psy10644        177 LMGT-----DLAACIKEANRILKLG  196 (196)
Q Consensus       177 lh~~-----d~~~~l~e~~rvLkpg  196 (196)
                      +|+.     +...+|++++|+||||
T Consensus       103 l~~~~~~~~~~~~~l~~i~~~Lk~g  127 (252)
T d1ri5a_         103 FHYAFSTSESLDIAQRNIARHLRPG  127 (252)
T ss_dssp             GGGGGSSHHHHHHHHHHHHHTEEEE
T ss_pred             eeecCCCHHHHHHHHHHHhceeCCC
Confidence            9653     4568999999999996

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.48  E-value=5.6e-14  Score=114.61  Aligned_cols=82  Identities=15%  Similarity=0.061  Sum_probs=66.9

Q ss_pred             HhhcCCCCCEEEEEcCCCchhHhhc---cCCeEEEEeCCC----------------CCceEEEecCCCCCCCCCceeeEe
Q psy10644        112 QERESKGRLVIADLGCGEAKLAAEL---TQHKVHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAV  172 (196)
Q Consensus       112 ~~~~~~~~~~ILDlGCG~G~~a~~l---~~~~v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi  172 (196)
                      .....+++.+|||||||.|.++..+   .+++|+|+++|+                ..+.+...|   .++.+++||.|+
T Consensus        55 ~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d---~~~~~~~fD~i~  131 (291)
T d1kpia_          55 DKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQG---WEEFDEPVDRIV  131 (291)
T ss_dssp             HTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECC---GGGCCCCCSEEE
T ss_pred             HhcCCCCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhccchhhhhhhhc---ccccccccceEe
Confidence            3446677999999999999998887   578999999998                234444444   356678999999


Q ss_pred             ecccc-ccc---------CHHHHHHHHHHhccCC
Q psy10644        173 FCLSL-MGT---------DLAACIKEANRILKLG  196 (196)
Q Consensus       173 ~~~~l-h~~---------d~~~~l~e~~rvLkpg  196 (196)
                      +..++ |..         ++..+|++++|+||||
T Consensus       132 sie~~eH~~~~~~~~~~~~~~~~f~~i~~~Lkpg  165 (291)
T d1kpia_         132 SLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDD  165 (291)
T ss_dssp             EESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTT
T ss_pred             echhHHhcchhhhhhHHHHHHHHHHHHHHhCCCC
Confidence            99999 754         3789999999999997

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.47  E-value=6.6e-14  Score=113.57  Aligned_cols=81  Identities=17%  Similarity=0.141  Sum_probs=65.0

Q ss_pred             hhcCCCCCEEEEEcCCCchhHhhc---cCCeEEEEeCCC----------------CCceEEEecCCCCCCCCCceeeEee
Q psy10644        113 ERESKGRLVIADLGCGEAKLAAEL---TQHKVHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAVF  173 (196)
Q Consensus       113 ~~~~~~~~~ILDlGCG~G~~a~~l---~~~~v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~  173 (196)
                      .+..+++.+|||||||+|.++..+   .+++|+|+|+|+                ..+.+...|...+   +++||.|++
T Consensus        47 ~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~---~~~fD~i~s  123 (280)
T d2fk8a1          47 KLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF---AEPVDRIVS  123 (280)
T ss_dssp             TSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC---CCCCSEEEE
T ss_pred             HcCCCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhh---ccchhhhhH
Confidence            335567899999999999998887   478999999998                2344444554443   478999999


Q ss_pred             cccc-ccc--CHHHHHHHHHHhccCC
Q psy10644        174 CLSL-MGT--DLAACIKEANRILKLG  196 (196)
Q Consensus       174 ~~~l-h~~--d~~~~l~e~~rvLkpg  196 (196)
                      ..++ |..  ++..+|++++|+||||
T Consensus       124 i~~~eh~~~~~~~~~f~~i~~~Lkpg  149 (280)
T d2fk8a1         124 IEAFEHFGHENYDDFFKRCFNIMPAD  149 (280)
T ss_dssp             ESCGGGTCGGGHHHHHHHHHHHSCTT
T ss_pred             hhHHHHhhhhhHHHHHHHHHhccCCC
Confidence            9999 543  7799999999999997

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.45  E-value=1.3e-13  Score=112.00  Aligned_cols=81  Identities=20%  Similarity=0.159  Sum_probs=69.0

Q ss_pred             hhcCCCCCEEEEEcCCCchhHhhc---cCCeEEEEeCCC----------------CCceEEEecCCCCCCCCCceeeEee
Q psy10644        113 ERESKGRLVIADLGCGEAKLAAEL---TQHKVHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAVF  173 (196)
Q Consensus       113 ~~~~~~~~~ILDlGCG~G~~a~~l---~~~~v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~  173 (196)
                      .+..+++.+|||||||.|.++..+   .+++|+|+++|+                .++.+..+|...++   ++||.|++
T Consensus        57 ~l~l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~---~~fD~i~s  133 (285)
T d1kpga_          57 KLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD---EPVDRIVS  133 (285)
T ss_dssp             TTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---CCCSEEEE
T ss_pred             HcCCCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhccc---ccccceee
Confidence            345567999999999999998887   578999999998                46778888876654   68999999


Q ss_pred             cccc-ccc--CHHHHHHHHHHhccCC
Q psy10644        174 CLSL-MGT--DLAACIKEANRILKLG  196 (196)
Q Consensus       174 ~~~l-h~~--d~~~~l~e~~rvLkpg  196 (196)
                      ..++ |..  +...++++++|+||||
T Consensus       134 i~~~eh~~~~~~~~~~~~~~r~Lkpg  159 (285)
T d1kpga_         134 IGAFEHFGHERYDAFFSLAHRLLPAD  159 (285)
T ss_dssp             ESCGGGTCTTTHHHHHHHHHHHSCTT
T ss_pred             ehhhhhcCchhHHHHHHHHHhhcCCC
Confidence            9999 753  7899999999999997

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=2.3e-14  Score=112.72  Aligned_cols=80  Identities=14%  Similarity=0.049  Sum_probs=61.8

Q ss_pred             CCCCEEEEEcCCCchhHhhcc---CCeEEEEeCCC--------------CCceEEEecCCC--CCCCCCceeeEee----
Q psy10644        117 KGRLVIADLGCGEAKLAAELT---QHKVHSLDLVA--------------LNERVTSCDMTR--TPLKPYSVDVAVF----  173 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l~---~~~v~giDls~--------------~~~~~~~~d~~~--lp~~~~sfD~Vi~----  173 (196)
                      .++.+|||||||+|.++..+.   +.+|+|+|+|+              .++.++..++..  .++++++||.|++    
T Consensus        52 ~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~~  131 (229)
T d1zx0a1          52 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYP  131 (229)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCC
T ss_pred             cCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeecccc
Confidence            447899999999999998882   34899999998              234555555433  3677889999874    


Q ss_pred             -cccc-cccCHHHHHHHHHHhccCC
Q psy10644        174 -CLSL-MGTDLAACIKEANRILKLG  196 (196)
Q Consensus       174 -~~~l-h~~d~~~~l~e~~rvLkpg  196 (196)
                       ...+ |..++..++++++|+||||
T Consensus       132 ~~~~~~~~~~~~~~~~~~~r~LkpG  156 (229)
T d1zx0a1         132 LSEETWHTHQFNFIKNHAFRLLKPG  156 (229)
T ss_dssp             CBGGGTTTHHHHHHHHTHHHHEEEE
T ss_pred             cccccccccCHHHHHHHHHHHcCCC
Confidence             4445 3448999999999999997

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.42  E-value=2.3e-13  Score=104.25  Aligned_cols=81  Identities=21%  Similarity=0.255  Sum_probs=67.6

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC-----------------CCceEEEecCCCCCCCCCceeeEeecc
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA-----------------LNERVTSCDMTRTPLKPYSVDVAVFCL  175 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~-----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~  175 (196)
                      ...++.+|||+|||+|.++..+  ...+|+++|+|+                 .++.+..+|+.. ++++++||+|++..
T Consensus        49 ~~~~~~~VLDiGcG~G~~~~~la~~~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~-~~~~~~fD~Ii~~~  127 (194)
T d1dusa_          49 VVDKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NVKDRKYNKIITNP  127 (194)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TCTTSCEEEEEECC
T ss_pred             CcCCCCeEEEEeecCChhHHHHHhhccccceeeeccccchhHHHHHHHhCCccceEEEEEcchhh-hhccCCceEEEEcc
Confidence            4455889999999999998888  456999999998                 246788888866 66788999999998


Q ss_pred             ccccc-C-HHHHHHHHHHhccCC
Q psy10644        176 SLMGT-D-LAACIKEANRILKLG  196 (196)
Q Consensus       176 ~lh~~-d-~~~~l~e~~rvLkpg  196 (196)
                      .+|.. + ...+++++.++||||
T Consensus       128 p~~~~~~~~~~~l~~~~~~Lkpg  150 (194)
T d1dusa_         128 PIRAGKEVLHRIIEEGKELLKDN  150 (194)
T ss_dssp             CSTTCHHHHHHHHHHHHHHEEEE
T ss_pred             cEEecchhhhhHHHHHHHhcCcC
Confidence            88754 4 578999999999986

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.41  E-value=6.4e-13  Score=105.72  Aligned_cols=88  Identities=19%  Similarity=0.299  Sum_probs=67.7

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC---------------CCceEEEecCCCCCCC
Q psy10644        104 VDIIIKSIQERESKGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA---------------LNERVTSCDMTRTPLK  164 (196)
Q Consensus       104 ~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~---------------~~~~~~~~d~~~lp~~  164 (196)
                      .+.+++.+   ...+..+|||||||+|.++..+    ++.+++++|+.+               .++.++.+|+.+ +. 
T Consensus        69 ~~~~~~~~---d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~rv~~~~~D~~~-~~-  143 (253)
T d1tw3a2          69 FDAPAAAY---DWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFE-PL-  143 (253)
T ss_dssp             THHHHHHS---CCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTS-CC-
T ss_pred             HHHHHhhc---CCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccCHHHHHHHHHHHHHhhcccchhhccccchh-hc-
Confidence            44444443   3344679999999999998887    467999999865               368899999854 22 


Q ss_pred             CCceeeEeeccccccc---CHHHHHHHHHHhccCC
Q psy10644        165 PYSVDVAVFCLSLMGT---DLAACIKEANRILKLG  196 (196)
Q Consensus       165 ~~sfD~Vi~~~~lh~~---d~~~~l~e~~rvLkpg  196 (196)
                      ..+||+|++..+||+.   +..++|++++|+||||
T Consensus       144 ~~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPG  178 (253)
T d1tw3a2         144 PRKADAIILSFVLLNWPDHDAVRILTRCAEALEPG  178 (253)
T ss_dssp             SSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEE
T ss_pred             ccchhheeeccccccCCchhhHHHHHHHHHhcCCC
Confidence            3579999999999754   3457899999999997

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.1e-13  Score=111.45  Aligned_cols=78  Identities=14%  Similarity=0.115  Sum_probs=59.1

Q ss_pred             CCEEEEEcCCCchhHhhc--------c--CCeEEEEeCCC----------------CCceE--EEecCC------CCCCC
Q psy10644        119 RLVIADLGCGEAKLAAEL--------T--QHKVHSLDLVA----------------LNERV--TSCDMT------RTPLK  164 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l--------~--~~~v~giDls~----------------~~~~~--~~~d~~------~lp~~  164 (196)
                      ..+|||||||+|.++..+        .  ...++|+|+|+                .++.+  ...+++      ..+.+
T Consensus        41 ~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (280)
T d1jqea_          41 EIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKE  120 (280)
T ss_dssp             EEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSS
T ss_pred             CCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCC
Confidence            458999999999986665        1  23789999997                12222  222221      23567


Q ss_pred             CCceeeEeeccccccc-CHHHHHHHHHHhccCC
Q psy10644        165 PYSVDVAVFCLSLMGT-DLAACIKEANRILKLG  196 (196)
Q Consensus       165 ~~sfD~Vi~~~~lh~~-d~~~~l~e~~rvLkpg  196 (196)
                      +++||+|++.++||+. |+..+|++++++||||
T Consensus       121 ~~~fD~I~~~~~l~~~~d~~~~l~~l~~~Lkpg  153 (280)
T d1jqea_         121 LQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTN  153 (280)
T ss_dssp             CCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEE
T ss_pred             CCceeEEEEccceecCCCHHHHHHHHHhhCCCC
Confidence            8999999999999766 9999999999999996

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.34  E-value=4.3e-13  Score=105.78  Aligned_cols=86  Identities=17%  Similarity=0.132  Sum_probs=68.6

Q ss_pred             HHhhcCCCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC-------------CCceEEEecCCCC-CCCCCceeeEe
Q psy10644        111 IQERESKGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA-------------LNERVTSCDMTRT-PLKPYSVDVAV  172 (196)
Q Consensus       111 l~~~~~~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~-------------~~~~~~~~d~~~l-p~~~~sfD~Vi  172 (196)
                      +...+.+++.+|||||||+|..+..+    ++..|+|+|+|+             .++..+..|.... ++.+..+|+++
T Consensus        67 l~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~  146 (230)
T d1g8sa_          67 LKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDV  146 (230)
T ss_dssp             CCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEE
T ss_pred             HHhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeEE
Confidence            34456678999999999999988777    456999999998             5677788777553 45667788877


Q ss_pred             eccccccc-CHHHHHHHHHHhccCC
Q psy10644        173 FCLSLMGT-DLAACIKEANRILKLG  196 (196)
Q Consensus       173 ~~~~lh~~-d~~~~l~e~~rvLkpg  196 (196)
                      ++..+|.. +...++.+++++||||
T Consensus       147 i~~~~~~~~~~~~~l~~~~r~LKpg  171 (230)
T d1g8sa_         147 IYEDVAQPNQAEILIKNAKWFLKKG  171 (230)
T ss_dssp             EEECCCSTTHHHHHHHHHHHHEEEE
T ss_pred             eeccccchHHHHHHHHHHHHhcccC
Confidence            77777544 8889999999999996

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.34  E-value=4.3e-13  Score=102.08  Aligned_cols=81  Identities=26%  Similarity=0.270  Sum_probs=68.4

Q ss_pred             hcCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC----------------CCceEEEecCCCCCCCCCceeeEeecc
Q psy10644        114 RESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAVFCL  175 (196)
Q Consensus       114 ~~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~  175 (196)
                      ..+.++.+|||||||+|.++..+  ...+|+|+|+++                .++.++++|+.+.+.+...||+|++..
T Consensus        29 l~~~~g~~VLDiGcGsG~~s~~lA~~~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~~D~v~~~~  108 (186)
T d1l3ia_          29 AEPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGG  108 (186)
T ss_dssp             HCCCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEEESC
T ss_pred             cCCCCCCEEEEEECCeEcccccccccceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCCcCEEEEeC
Confidence            36667999999999999998888  445999999998                378899999887777788999999876


Q ss_pred             cccccCHHHHHHHHHHhccCC
Q psy10644        176 SLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       176 ~lh~~d~~~~l~e~~rvLkpg  196 (196)
                      ..+  +...+++++.++||||
T Consensus       109 ~~~--~~~~~~~~~~~~Lkpg  127 (186)
T d1l3ia_         109 SGG--ELQEILRIIKDKLKPG  127 (186)
T ss_dssp             CTT--CHHHHHHHHHHTEEEE
T ss_pred             ccc--cchHHHHHHHHHhCcC
Confidence            553  4578899999999986

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.34  E-value=7.4e-13  Score=107.23  Aligned_cols=77  Identities=16%  Similarity=0.182  Sum_probs=57.0

Q ss_pred             CCEEEEEcCCCchhHhhc--cCCeEEEEeCCCC-------------------CceEEEecCCC----CCCCCCceeeEee
Q psy10644        119 RLVIADLGCGEAKLAAEL--TQHKVHSLDLVAL-------------------NERVTSCDMTR----TPLKPYSVDVAVF  173 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l--~~~~v~giDls~~-------------------~~~~~~~d~~~----lp~~~~sfD~Vi~  173 (196)
                      +.+|||||||+|.++..|  .+.+|+|+|+|+.                   ...+..+++..    +| ..+.||+|+|
T Consensus        57 ~~~vLD~GcG~G~~~~~la~~g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~fd~v~~  135 (292)
T d1xvaa_          57 CHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVP-AGDGFDAVIC  135 (292)
T ss_dssp             CCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSC-CTTCEEEEEE
T ss_pred             CCEEEEecCCCcHHHHHHHHcCCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccC-CCCCceEEEE
Confidence            579999999999999998  5679999999981                   12233344322    23 3468999987


Q ss_pred             cc-cc-ccc-------CHHHHHHHHHHhccCC
Q psy10644        174 CL-SL-MGT-------DLAACIKEANRILKLG  196 (196)
Q Consensus       174 ~~-~l-h~~-------d~~~~l~e~~rvLkpg  196 (196)
                      .. ++ |..       +...+|++++|+||||
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg  167 (292)
T d1xvaa_         136 LGNSFAHLPDSKGDQSEHRLALKNIASMVRPG  167 (292)
T ss_dssp             CSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEE
T ss_pred             ecCchhhcCCcccChHHHHHHHHHHHHHcCcC
Confidence            54 66 532       4678999999999997

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.33  E-value=4.6e-13  Score=103.80  Aligned_cols=78  Identities=13%  Similarity=0.225  Sum_probs=66.0

Q ss_pred             CCEEEEEcCCCchhHhhc----cCCeEEEEeCCC---------------CCceEEEecCCCCC--CCCCceeeEeecccc
Q psy10644        119 RLVIADLGCGEAKLAAEL----TQHKVHSLDLVA---------------LNERVTSCDMTRTP--LKPYSVDVAVFCLSL  177 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l----~~~~v~giDls~---------------~~~~~~~~d~~~lp--~~~~sfD~Vi~~~~l  177 (196)
                      +..|||||||+|.++..+    +...++|+|+++               .|+.++.+|+..+.  ++++++|.|++.+..
T Consensus        30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp~  109 (204)
T d2fcaa1          30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFSD  109 (204)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESCC
T ss_pred             CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhcccccccc
Confidence            458999999999987777    567999999998               58999999987765  789999999988877


Q ss_pred             ccc-C--------HHHHHHHHHHhccCC
Q psy10644        178 MGT-D--------LAACIKEANRILKLG  196 (196)
Q Consensus       178 h~~-d--------~~~~l~e~~rvLkpg  196 (196)
                      .+. .        ...+|++++|+||||
T Consensus       110 P~~k~~h~k~Rl~~~~~l~~~~r~Lkpg  137 (204)
T d2fcaa1         110 PWPKKRHEKRRLTYSHFLKKYEEVMGKG  137 (204)
T ss_dssp             CCCSGGGGGGSTTSHHHHHHHHHHHTTS
T ss_pred             ccchhhhcchhhhHHHHHHHHHHhCCCC
Confidence            443 2        258999999999997

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=4.4e-13  Score=110.85  Aligned_cols=93  Identities=16%  Similarity=0.217  Sum_probs=72.0

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc---cC-CeEEEEeCCC------------------------CCceEEE
Q psy10644        104 VDIIIKSIQERESKGRLVIADLGCGEAKLAAEL---TQ-HKVHSLDLVA------------------------LNERVTS  155 (196)
Q Consensus       104 ~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l---~~-~~v~giDls~------------------------~~~~~~~  155 (196)
                      ...+-+.+.....+++.+|||||||+|.++..+   .+ .+|+|+|+++                        .++.+++
T Consensus       137 ~~~~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~  216 (328)
T d1nw3a_         137 FDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLER  216 (328)
T ss_dssp             HHHHHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEE
T ss_pred             HHHHHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEE
Confidence            344444555556667899999999999987766   24 4799999998                        2688999


Q ss_pred             ecCCCCCCCCCcee--eEeecccccccCHHHHHHHHHHhccCC
Q psy10644        156 CDMTRTPLKPYSVD--VAVFCLSLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       156 ~d~~~lp~~~~sfD--~Vi~~~~lh~~d~~~~l~e~~rvLkpg  196 (196)
                      +|+.+.++.+..+|  +|++...+|..+....|.|++|+||||
T Consensus       217 gd~~~~~~~~~~~~advi~~~~~~f~~~~~~~l~e~~r~LKpG  259 (328)
T d1nw3a_         217 GDFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEG  259 (328)
T ss_dssp             CCTTSHHHHHHHHHCSEEEECCTTTCHHHHHHHHHHHTTCCTT
T ss_pred             CcccccccccccCcceEEEEcceecchHHHHHHHHHHHhCCCC
Confidence            99999888776665  455444446779999999999999998

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.33  E-value=9.6e-13  Score=105.70  Aligned_cols=79  Identities=24%  Similarity=0.217  Sum_probs=68.8

Q ss_pred             hcCCCCCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC------------------CCceEEEecCCCCCCCCCceee
Q psy10644        114 RESKGRLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA------------------LNERVTSCDMTRTPLKPYSVDV  170 (196)
Q Consensus       114 ~~~~~~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~------------------~~~~~~~~d~~~lp~~~~sfD~  170 (196)
                      ....++++|||+|||+|.++..|     +..+|+++|+++                  .++.+.+.|+.+.++++++||.
T Consensus        92 l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~~~~~fDa  171 (264)
T d1i9ga_          92 GDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDR  171 (264)
T ss_dssp             TTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEEE
T ss_pred             hCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccccccCCCcce
Confidence            35566999999999999998877     356999999997                  4788899999888999999999


Q ss_pred             EeecccccccCHHHHHHHHHHhccCC
Q psy10644        171 AVFCLSLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       171 Vi~~~~lh~~d~~~~l~e~~rvLkpg  196 (196)
                      |++    |..++..++.++.|+||||
T Consensus       172 V~l----dlp~P~~~l~~~~~~LkpG  193 (264)
T d1i9ga_         172 AVL----DMLAPWEVLDAVSRLLVAG  193 (264)
T ss_dssp             EEE----ESSCGGGGHHHHHHHEEEE
T ss_pred             EEE----ecCCHHHHHHHHHhccCCC
Confidence            874    5679999999999999997

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.31  E-value=4.9e-12  Score=104.18  Aligned_cols=78  Identities=15%  Similarity=0.165  Sum_probs=67.1

Q ss_pred             CCEEEEEcCCCchhHhhc--cC-CeEEEEeCCC---------------CCceEEEecCCCCCCCCCceeeEeeccccc--
Q psy10644        119 RLVIADLGCGEAKLAAEL--TQ-HKVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDVAVFCLSLM--  178 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l--~~-~~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh--  178 (196)
                      +.+|||||||+|.++..+  .+ .+|+++|.++               .++.++.+++.++++++++||+|++....+  
T Consensus        39 ~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~~~~  118 (328)
T d1g6q1_          39 DKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFL  118 (328)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTCCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBTTB
T ss_pred             cCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecceee
Confidence            789999999999998877  34 4899999998               467899999999999999999999876653  


Q ss_pred             -cc-CHHHHHHHHHHhccCC
Q psy10644        179 -GT-DLAACIKEANRILKLG  196 (196)
Q Consensus       179 -~~-d~~~~l~e~~rvLkpg  196 (196)
                       +. ....++.++.|+||||
T Consensus       119 ~~e~~~~~~~~a~~r~Lkpg  138 (328)
T d1g6q1_         119 LYESMMDTVLYARDHYLVEG  138 (328)
T ss_dssp             STTCCHHHHHHHHHHHEEEE
T ss_pred             ccchhHHHHHHHHHhccCCC
Confidence             22 6888999999999996

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.30  E-value=1.1e-12  Score=101.96  Aligned_cols=83  Identities=13%  Similarity=0.055  Sum_probs=64.8

Q ss_pred             hcCCCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC-------------CCceEEEecCCCCCCCCCceeeEeec-c
Q psy10644        114 RESKGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA-------------LNERVTSCDMTRTPLKPYSVDVAVFC-L  175 (196)
Q Consensus       114 ~~~~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~-------------~~~~~~~~d~~~lp~~~~sfD~Vi~~-~  175 (196)
                      ...+++.+|||||||+|..+..+    ...+|+|+|+|+             .|+.++..|+...+.....+|.|.++ .
T Consensus        52 l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~v~~  131 (209)
T d1nt2a_          52 LKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQ  131 (209)
T ss_dssp             CCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEE
T ss_pred             CCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEEEEe
Confidence            45567999999999999887776    446999999998             58889999987766555555554332 3


Q ss_pred             cc-cccCHHHHHHHHHHhccCC
Q psy10644        176 SL-MGTDLAACIKEANRILKLG  196 (196)
Q Consensus       176 ~l-h~~d~~~~l~e~~rvLkpg  196 (196)
                      .+ |..+...++++++|+||||
T Consensus       132 ~~~~~~~~~~~l~~~~~~Lkpg  153 (209)
T d1nt2a_         132 DIAQKNQIEILKANAEFFLKEK  153 (209)
T ss_dssp             CCCSTTHHHHHHHHHHHHEEEE
T ss_pred             cccChhhHHHHHHHHHHHhccC
Confidence            34 5558889999999999996

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.30  E-value=1.5e-12  Score=104.11  Aligned_cols=88  Identities=20%  Similarity=0.161  Sum_probs=67.5

Q ss_pred             HHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC--------------CCceEEEecCCCCCCCCCce
Q psy10644        105 DIIIKSIQERESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA--------------LNERVTSCDMTRTPLKPYSV  168 (196)
Q Consensus       105 ~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~--------------~~~~~~~~d~~~lp~~~~sf  168 (196)
                      ...++.+.... .++.+|||+|||+|.++..+  .+.+|+|+|+++              .++.+..+|+.. .++.++|
T Consensus       108 ~l~l~~l~~~~-~~g~~VLDiGcGsG~l~i~aa~~g~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~-~~~~~~f  185 (254)
T d2nxca1         108 RLALKALARHL-RPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEA-ALPFGPF  185 (254)
T ss_dssp             HHHHHHHHHHC-CTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHH-HGGGCCE
T ss_pred             hHHHHHHHhhc-CccCEEEEcccchhHHHHHHHhcCCEEEEEECChHHHHHHHHHHHHcCCceeEEeccccc-ccccccc
Confidence            44556665433 45789999999999998777  578999999999              255677777654 3567899


Q ss_pred             eeEeecccccccCHHHHHHHHHHhccCC
Q psy10644        169 DVAVFCLSLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       169 D~Vi~~~~lh~~d~~~~l~e~~rvLkpg  196 (196)
                      |+|+++...+  ....++.++.|+||||
T Consensus       186 D~V~ani~~~--~l~~l~~~~~~~LkpG  211 (254)
T d2nxca1         186 DLLVANLYAE--LHAALAPRYREALVPG  211 (254)
T ss_dssp             EEEEEECCHH--HHHHHHHHHHHHEEEE
T ss_pred             chhhhccccc--cHHHHHHHHHHhcCCC
Confidence            9999875443  3567889999999996

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.29  E-value=4.6e-12  Score=103.93  Aligned_cols=78  Identities=15%  Similarity=0.137  Sum_probs=66.7

Q ss_pred             CCEEEEEcCCCchhHhhc--cC-CeEEEEeCCC---------------CCceEEEecCCCCCCCCCceeeEeecccccc-
Q psy10644        119 RLVIADLGCGEAKLAAEL--TQ-HKVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDVAVFCLSLMG-  179 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l--~~-~~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~-  179 (196)
                      +.+|||||||+|.++..+  .+ .+|+|+|.++               .++.++.+|+.+++++.++||+|++....+. 
T Consensus        34 ~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~~l  113 (316)
T d1oria_          34 DKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCL  113 (316)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBBTB
T ss_pred             cCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeeeeee
Confidence            779999999999998777  34 4899999998               3688999999999999999999998665542 


Q ss_pred             --c-CHHHHHHHHHHhccCC
Q psy10644        180 --T-DLAACIKEANRILKLG  196 (196)
Q Consensus       180 --~-d~~~~l~e~~rvLkpg  196 (196)
                        . ..+.++..+.|+||||
T Consensus       114 ~~e~~~~~~l~~~~r~Lkp~  133 (316)
T d1oria_         114 FYESMLNTVLHARDKWLAPD  133 (316)
T ss_dssp             TBTCCHHHHHHHHHHHEEEE
T ss_pred             ccHHHHHHHHHHHHhcCCCC
Confidence              2 6889999999999986

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=4.5e-13  Score=105.84  Aligned_cols=80  Identities=19%  Similarity=0.232  Sum_probs=59.0

Q ss_pred             CCCCEEEEEcCCCchhHhhc--cCC-eEEEEeCCCCCce-----------------------------------------
Q psy10644        117 KGRLVIADLGCGEAKLAAEL--TQH-KVHSLDLVALNER-----------------------------------------  152 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l--~~~-~v~giDls~~~~~-----------------------------------------  152 (196)
                      .++.+|||||||+|.++..+  .+. +|+|+|+|+..+.                                         
T Consensus        50 ~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (257)
T d2a14a1          50 LQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA  129 (257)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHhh
Confidence            34679999999999987766  333 7999999981110                                         


Q ss_pred             ----EEEecC----CCCCCCCCceeeEeeccccccc-----CHHHHHHHHHHhccCC
Q psy10644        153 ----VTSCDM----TRTPLKPYSVDVAVFCLSLMGT-----DLAACIKEANRILKLG  196 (196)
Q Consensus       153 ----~~~~d~----~~lp~~~~sfD~Vi~~~~lh~~-----d~~~~l~e~~rvLkpg  196 (196)
                          ....++    ...++++++||+|++.+++|+.     ++..++++++|+||||
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpG  186 (257)
T d2a14a1         130 AVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPG  186 (257)
T ss_dssp             HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEE
T ss_pred             hhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCC
Confidence                111111    1236778999999999999543     5678999999999997

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=9.2e-12  Score=99.51  Aligned_cols=80  Identities=18%  Similarity=0.296  Sum_probs=59.5

Q ss_pred             CCCCEEEEEcCCCchhHhhc---cCCeEEEEeCCCCC-------------------------------------------
Q psy10644        117 KGRLVIADLGCGEAKLAAEL---TQHKVHSLDLVALN-------------------------------------------  150 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l---~~~~v~giDls~~~-------------------------------------------  150 (196)
                      .++.+|||||||+|.+....   ...+|+|+|+|+.+                                           
T Consensus        53 ~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (263)
T d2g72a1          53 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA  132 (263)
T ss_dssp             SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred             CCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhhh
Confidence            35789999999999876544   23489999999811                                           


Q ss_pred             --ceEEEecCCC------CCCCCCceeeEeeccccccc-----CHHHHHHHHHHhccCC
Q psy10644        151 --ERVTSCDMTR------TPLKPYSVDVAVFCLSLMGT-----DLAACIKEANRILKLG  196 (196)
Q Consensus       151 --~~~~~~d~~~------lp~~~~sfD~Vi~~~~lh~~-----d~~~~l~e~~rvLkpg  196 (196)
                        ..+..+|+..      .+++.++||+|+++++||+.     ++..+|++++++||||
T Consensus       133 ~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPG  191 (263)
T d2g72a1         133 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPG  191 (263)
T ss_dssp             HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEE
T ss_pred             hhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCC
Confidence              1234456532      23456789999999999543     4678999999999997

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.28  E-value=6e-12  Score=100.39  Aligned_cols=80  Identities=20%  Similarity=0.317  Sum_probs=63.2

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC---------------CCceEEEecCCCCCCCCCceeeEeecc
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDVAVFCL  175 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~  175 (196)
                      ...+..+|||||||+|.++..+    ++.+++++|+.+               .++.+...|+.. +++ ..||+|++..
T Consensus        78 d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~~~~~~~~ri~~~~~d~~~-~~p-~~~D~v~~~~  155 (256)
T d1qzza2          78 DWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFK-PLP-VTADVVLLSF  155 (256)
T ss_dssp             CCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCS-CCEEEEEEES
T ss_pred             CCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecChHHHHHHHHHHhhcCCcceeeeeeeeccc-ccc-ccchhhhccc
Confidence            3344678999999999998888    467999999854               357778888754 444 4599999999


Q ss_pred             ccccc---CHHHHHHHHHHhccCC
Q psy10644        176 SLMGT---DLAACIKEANRILKLG  196 (196)
Q Consensus       176 ~lh~~---d~~~~l~e~~rvLkpg  196 (196)
                      +||..   +..++|++++++||||
T Consensus       156 vLh~~~d~~~~~lL~~i~~~Lkpg  179 (256)
T d1qzza2         156 VLLNWSDEDALTILRGCVRALEPG  179 (256)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred             cccccCcHHHHHHHHHHHhhcCCc
Confidence            99754   3457899999999996

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.24  E-value=9e-12  Score=96.83  Aligned_cols=81  Identities=16%  Similarity=0.044  Sum_probs=64.4

Q ss_pred             HHhhcCCCCCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC---------------CCceEEEecCCCCCCCCCceee
Q psy10644        111 IQERESKGRLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDV  170 (196)
Q Consensus       111 l~~~~~~~~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~  170 (196)
                      +.....+++.+|||||||+|.++..+     ....|+++|+++               .++.++.+|....+..+++||+
T Consensus        68 l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~~fD~  147 (213)
T d1dl5a1          68 MEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDV  147 (213)
T ss_dssp             HHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEE
T ss_pred             HHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHccccccchhh
Confidence            33445667999999999999987766     345899999998               4778888898877777889999


Q ss_pred             EeecccccccCHHHHHHHHHHhccCC
Q psy10644        171 AVFCLSLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       171 Vi~~~~lh~~d~~~~l~e~~rvLkpg  196 (196)
                      |++..+++...     .++.++||||
T Consensus       148 I~~~~~~~~~p-----~~l~~~LkpG  168 (213)
T d1dl5a1         148 IFVTVGVDEVP-----ETWFTQLKEG  168 (213)
T ss_dssp             EEECSBBSCCC-----HHHHHHEEEE
T ss_pred             hhhhccHHHhH-----HHHHHhcCCC
Confidence            99999985431     3567889986

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=1.3e-11  Score=100.73  Aligned_cols=79  Identities=22%  Similarity=0.191  Sum_probs=65.8

Q ss_pred             CCCEEEEEcCCCchhHhhc--cC-CeEEEEeCCC---------------CCceEEEecCCCCCCCCCceeeEeecccccc
Q psy10644        118 GRLVIADLGCGEAKLAAEL--TQ-HKVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDVAVFCLSLMG  179 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l--~~-~~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~  179 (196)
                      ++.+|||||||+|.++..+  .+ .+|+++|.++               .++.++.+|++++++++.+||+|++....|.
T Consensus        35 ~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~~~~  114 (311)
T d2fyta1          35 KDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYF  114 (311)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCBTT
T ss_pred             CcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEeeeeee
Confidence            4779999999999998877  34 4899999999               4688999999999999999999998766643


Q ss_pred             c----CHHHHHHHHHHhccCC
Q psy10644        180 T----DLAACIKEANRILKLG  196 (196)
Q Consensus       180 ~----d~~~~l~e~~rvLkpg  196 (196)
                      .    .++.++....|+||||
T Consensus       115 ~~~e~~~~~~~~a~~~~Lkp~  135 (311)
T d2fyta1         115 LLFESMLDSVLYAKNKYLAKG  135 (311)
T ss_dssp             BTTTCHHHHHHHHHHHHEEEE
T ss_pred             cccccccHHHHHHHHhcCCCC
Confidence            3    3567777788999986

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.19  E-value=2.3e-11  Score=93.99  Aligned_cols=78  Identities=13%  Similarity=0.155  Sum_probs=64.9

Q ss_pred             CCEEEEEcCCCchhHhhc----cCCeEEEEeCCC---------------CCceEEEecCCCCC--CCCCceeeEeecccc
Q psy10644        119 RLVIADLGCGEAKLAAEL----TQHKVHSLDLVA---------------LNERVTSCDMTRTP--LKPYSVDVAVFCLSL  177 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l----~~~~v~giDls~---------------~~~~~~~~d~~~lp--~~~~sfD~Vi~~~~l  177 (196)
                      +..|||||||+|.++..+    +...++|+|+++               .|+.++.+|+..+.  ++++++|.|++.+.-
T Consensus        32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fPd  111 (204)
T d1yzha1          32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFSD  111 (204)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESCC
T ss_pred             CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhcccccc
Confidence            458999999999987777    577999999998               58999999998765  788999999887765


Q ss_pred             ccc-C--------HHHHHHHHHHhccCC
Q psy10644        178 MGT-D--------LAACIKEANRILKLG  196 (196)
Q Consensus       178 h~~-d--------~~~~l~e~~rvLkpg  196 (196)
                      .+. .        ...+|.+++|+||||
T Consensus       112 Pw~K~~h~krRl~~~~~l~~~~~~Lkpg  139 (204)
T d1yzha1         112 PWPKKRHEKRRLTYKTFLDTFKRILPEN  139 (204)
T ss_dssp             CCCSGGGGGGSTTSHHHHHHHHHHSCTT
T ss_pred             cccchhhhhhhhhHHHHHHHHHHhCCCC
Confidence            332 1        268999999999997

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.17  E-value=1e-11  Score=98.81  Aligned_cols=77  Identities=13%  Similarity=0.188  Sum_probs=64.4

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC----------------CCceEEEecCCCCCCCCCceeeEee
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAVF  173 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~  173 (196)
                      ..+++.+|||+|||+|.++..|     +..+|+++|.++                .++.+..+|+.+. ++++.||+|++
T Consensus        82 ~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~-~~~~~fD~V~l  160 (250)
T d1yb2a1          82 GLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF-ISDQMYDAVIA  160 (250)
T ss_dssp             CCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC-CCSCCEEEEEE
T ss_pred             CCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc-cccceeeeeee
Confidence            5566999999999999987777     346999999998                4788899998775 56789999875


Q ss_pred             cccccccCHHHHHHHHHHhccCC
Q psy10644        174 CLSLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       174 ~~~lh~~d~~~~l~e~~rvLkpg  196 (196)
                          +..++..+|.++.++||||
T Consensus       161 ----d~p~p~~~l~~~~~~LKpG  179 (250)
T d1yb2a1         161 ----DIPDPWNHVQKIASMMKPG  179 (250)
T ss_dssp             ----CCSCGGGSHHHHHHTEEEE
T ss_pred             ----cCCchHHHHHHHHHhcCCC
Confidence                3457888999999999997

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.13  E-value=2.9e-11  Score=94.88  Aligned_cols=85  Identities=20%  Similarity=0.103  Sum_probs=65.2

Q ss_pred             HHhhcCCCCCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC-------------CCceEEEecCCC---CCCCCCcee
Q psy10644        111 IQERESKGRLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA-------------LNERVTSCDMTR---TPLKPYSVD  169 (196)
Q Consensus       111 l~~~~~~~~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~-------------~~~~~~~~d~~~---lp~~~~sfD  169 (196)
                      +.....+++.+|||+|||+|.++..|     +...|+|+|+++             .++..+..|...   .+.....+|
T Consensus        66 l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD  145 (227)
T d1g8aa_          66 LKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVD  145 (227)
T ss_dssp             CCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEE
T ss_pred             ccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceE
Confidence            34456678999999999999998888     356999999998             467777777643   344556788


Q ss_pred             eEeecccccccCHHHHHHHHHHhccCC
Q psy10644        170 VAVFCLSLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       170 ~Vi~~~~lh~~d~~~~l~e~~rvLkpg  196 (196)
                      +|++ ...|..+...++.+++++||||
T Consensus       146 ~i~~-d~~~~~~~~~~l~~~~~~Lkpg  171 (227)
T d1g8aa_         146 VIFE-DVAQPTQAKILIDNAEVYLKRG  171 (227)
T ss_dssp             EEEE-CCCSTTHHHHHHHHHHHHEEEE
T ss_pred             EEEE-EccccchHHHHHHHHHHhcccC
Confidence            8765 2224557788999999999986

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=9.7e-11  Score=91.60  Aligned_cols=76  Identities=17%  Similarity=0.049  Sum_probs=60.8

Q ss_pred             CCCCCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC--------------------CCceEEEecCCCCCCCCCceee
Q psy10644        116 SKGRLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA--------------------LNERVTSCDMTRTPLKPYSVDV  170 (196)
Q Consensus       116 ~~~~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~--------------------~~~~~~~~d~~~lp~~~~sfD~  170 (196)
                      .+++.+|||||||+|..+..|     ...+|+++|+++                    .++.+..+|....+.+++.||+
T Consensus        74 l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~~~~fD~  153 (224)
T d1i1na_          74 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA  153 (224)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred             cCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccchhhhhhh
Confidence            355899999999999876665     356999999998                    3567888998887778889999


Q ss_pred             EeecccccccCHHHHHHHHHHhccCC
Q psy10644        171 AVFCLSLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       171 Vi~~~~lh~~d~~~~l~e~~rvLkpg  196 (196)
                      |++..+++..     ..++.+.||||
T Consensus       154 I~~~~~~~~i-----p~~l~~~LkpG  174 (224)
T d1i1na_         154 IHVGAAAPVV-----PQALIDQLKPG  174 (224)
T ss_dssp             EEECSBBSSC-----CHHHHHTEEEE
T ss_pred             hhhhcchhhc-----CHHHHhhcCCC
Confidence            9999998533     13577889986

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.03  E-value=1.4e-10  Score=92.98  Aligned_cols=78  Identities=22%  Similarity=0.195  Sum_probs=60.8

Q ss_pred             hcCCCCCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC----------------CCceEEEecCCCCCCCCCceeeEe
Q psy10644        114 RESKGRLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAV  172 (196)
Q Consensus       114 ~~~~~~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi  172 (196)
                      +...++.+|||+|||+|.++..|     ++.+|+++|+++                .++.+...|+.. .++...||.|+
T Consensus        99 l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~-~~~~~~~D~V~  177 (266)
T d1o54a_          99 LDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISE-GFDEKDVDALF  177 (266)
T ss_dssp             TTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGG-CCSCCSEEEEE
T ss_pred             hCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccc-cccccceeeeE
Confidence            35566999999999999887777     356999999998                245555566533 45667788875


Q ss_pred             ecccccccCHHHHHHHHHHhccCC
Q psy10644        173 FCLSLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       173 ~~~~lh~~d~~~~l~e~~rvLkpg  196 (196)
                      .    +..++..+|.++.++||||
T Consensus       178 ~----d~p~p~~~l~~~~~~LKpG  197 (266)
T d1o54a_         178 L----DVPDPWNYIDKCWEALKGG  197 (266)
T ss_dssp             E----CCSCGGGTHHHHHHHEEEE
T ss_pred             e----cCCCHHHHHHHHHhhcCCC
Confidence            3    4569999999999999997

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.02  E-value=3.4e-10  Score=88.53  Aligned_cols=82  Identities=18%  Similarity=0.116  Sum_probs=62.6

Q ss_pred             HHHhhcCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC-------------CCceEEEecCCCCCCCCCceeeEeec
Q psy10644        110 SIQERESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA-------------LNERVTSCDMTRTPLKPYSVDVAVFC  174 (196)
Q Consensus       110 ~l~~~~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~-------------~~~~~~~~d~~~lp~~~~sfD~Vi~~  174 (196)
                      .+..+..+++.+|||||||+|.++..|  ...+|+++|+++             .|+.++.+|......+.+.||+|++.
T Consensus        62 ml~~L~l~~g~~VLdIG~GsGy~ta~La~l~~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~~~pfD~Iiv~  141 (224)
T d1vbfa_          62 MLDELDLHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDRVVVW  141 (224)
T ss_dssp             HHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEEEEES
T ss_pred             HHHHhhhcccceEEEecCCCCHHHHHHHHHhcccccccccHHHHHHHHHHHhcccccccccCchhhcchhhhhHHHHHhh
Confidence            344445667999999999999998877  567999999998             58889999986644456889999998


Q ss_pred             ccccccCHHHHHHHHHHhccCC
Q psy10644        175 LSLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       175 ~~lh~~d~~~~l~e~~rvLkpg  196 (196)
                      .++...     ...+.+.||||
T Consensus       142 ~a~~~i-----p~~l~~qLk~G  158 (224)
T d1vbfa_         142 ATAPTL-----LCKPYEQLKEG  158 (224)
T ss_dssp             SBBSSC-----CHHHHHTEEEE
T ss_pred             cchhhh-----hHHHHHhcCCC
Confidence            887432     12355678875

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=2.8e-10  Score=93.58  Aligned_cols=78  Identities=17%  Similarity=0.177  Sum_probs=59.8

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC--------------------------CCceEEEecCCCCC-
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA--------------------------LNERVTSCDMTRTP-  162 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~--------------------------~~~~~~~~d~~~lp-  162 (196)
                      ...++.+|||+|||+|.++..|     +..+|+++|+++                          .++.+...|+.... 
T Consensus        95 ~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~  174 (324)
T d2b25a1          95 DINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATE  174 (324)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC-
T ss_pred             CCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhccc
Confidence            4556999999999999998877     356999999987                          36788889987653 


Q ss_pred             -CCCCceeeEeecccccccCHHHHHHHHHHhccCC
Q psy10644        163 -LKPYSVDVAVFCLSLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       163 -~~~~sfD~Vi~~~~lh~~d~~~~l~e~~rvLkpg  196 (196)
                       +++..||.|++    ...++..+|.++.++||||
T Consensus       175 ~~~~~~fD~V~L----D~p~P~~~l~~~~~~LKpG  205 (324)
T d2b25a1         175 DIKSLTFDAVAL----DMLNPHVTLPVFYPHLKHG  205 (324)
T ss_dssp             ------EEEEEE----CSSSTTTTHHHHGGGEEEE
T ss_pred             ccCCCCcceEee----cCcCHHHHHHHHHHhccCC
Confidence             56778999874    3357778999999999997

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.99  E-value=3.3e-10  Score=95.70  Aligned_cols=94  Identities=15%  Similarity=0.109  Sum_probs=64.1

Q ss_pred             hHHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc---cCC-eEEEEeCCCC------------------------CceE-
Q psy10644        103 PVDIIIKSIQERESKGRLVIADLGCGEAKLAAEL---TQH-KVHSLDLVAL------------------------NERV-  153 (196)
Q Consensus       103 ~~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l---~~~-~v~giDls~~------------------------~~~~-  153 (196)
                      ..+.+.+.+.....+++.+|||||||+|.++..+   .++ +|+|+|+++.                        ...+ 
T Consensus       201 ~~~~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~  280 (406)
T d1u2za_         201 LPNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFS  280 (406)
T ss_dssp             CHHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEE
T ss_pred             CHHHHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceee
Confidence            3445555666666777999999999999998777   344 8999999981                        1111 


Q ss_pred             EEecCCCCCCC---CCceeeEeecccccccCHHHHHHHHHHhccCC
Q psy10644        154 TSCDMTRTPLK---PYSVDVAVFCLSLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       154 ~~~d~~~lp~~---~~sfD~Vi~~~~lh~~d~~~~l~e~~rvLkpg  196 (196)
                      ..++....+..   -..+|+|++...+|..+...+|.+++|+||||
T Consensus       281 ~~~~f~~~~~~d~~~~~adVV~inn~~f~~~l~~~L~ei~r~LKPG  326 (406)
T d1u2za_         281 LKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVG  326 (406)
T ss_dssp             ESSCSTTCHHHHHHGGGCSEEEECCTTCCHHHHHHHHHHHTTCCTT
T ss_pred             eeechhhccccccccccceEEEEecccCchHHHHHHHHHHHhcCCC
Confidence            12222221111   12467777655556779999999999999998

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=98.95  E-value=1.3e-09  Score=87.46  Aligned_cols=74  Identities=19%  Similarity=0.239  Sum_probs=57.0

Q ss_pred             CCChHHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC---------------CCceEEEecCCC
Q psy10644        100 PINPVDIIIKSIQERESKGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA---------------LNERVTSCDMTR  160 (196)
Q Consensus       100 ~~~~~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~---------------~~~~~~~~d~~~  160 (196)
                      |......+++.........+.+|||+|||+|.++..+    +..+|+++|+|+               .++.++.+|+..
T Consensus        90 PRpeTE~lv~~~l~~~~~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~  169 (274)
T d2b3ta1          90 PRPDTECLVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFS  169 (274)
T ss_dssp             CCTTHHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTG
T ss_pred             cccchhhhhhhHhhhhcccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeeccccc
Confidence            4444555666554444455779999999999997777    567999999998               368899999865


Q ss_pred             CCCCCCceeeEeec
Q psy10644        161 TPLKPYSVDVAVFC  174 (196)
Q Consensus       161 lp~~~~sfD~Vi~~  174 (196)
                       ++++++||+|+++
T Consensus       170 -~~~~~~fDlIvsN  182 (274)
T d2b3ta1         170 -ALAGQQFAMIVSN  182 (274)
T ss_dssp             -GGTTCCEEEEEEC
T ss_pred             -ccCCCceeEEEec
Confidence             5667899999986

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.86  E-value=2.2e-09  Score=82.15  Aligned_cols=56  Identities=18%  Similarity=0.192  Sum_probs=46.1

Q ss_pred             CCCEEEEEcCCCchhHhhc--cC-CeEEEEeCCC----------CCceEEEecCCCCCCCCCceeeEeeccc
Q psy10644        118 GRLVIADLGCGEAKLAAEL--TQ-HKVHSLDLVA----------LNERVTSCDMTRTPLKPYSVDVAVFCLS  176 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l--~~-~~v~giDls~----------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~  176 (196)
                      .+.+|||+|||+|.++..+  .+ .+|+|+|+++          .++.++++|+..++   +.||+|+++--
T Consensus        48 ~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~~~~~~~~~D~~~l~---~~fD~Vi~NPP  116 (197)
T d1ne2a_          48 GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFMVADVSEIS---GKYDTWIMNPP  116 (197)
T ss_dssp             BTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCC---CCEEEEEECCC
T ss_pred             CCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHccccccEEEEehhhcC---CcceEEEeCcc
Confidence            4789999999999987655  34 4899999998          57899999998764   67999998743

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.80  E-value=1.5e-08  Score=79.79  Aligned_cols=77  Identities=14%  Similarity=0.128  Sum_probs=62.6

Q ss_pred             CCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC--------CCceEEEecCCCCCCCCCceeeEeeccccccc---C
Q psy10644        117 KGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA--------LNERVTSCDMTRTPLKPYSVDVAVFCLSLMGT---D  181 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~--------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~~---d  181 (196)
                      .+..+|||||||+|.++..+    ++.+++.+|+.+        .++.++.+|+.+ ++|  ..|+|++..+||..   +
T Consensus        80 ~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~ri~~~~gd~~~-~~p--~~D~~~l~~vLh~~~de~  156 (244)
T d1fp1d2          80 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDMFA-SVP--QGDAMILKAVCHNWSDEK  156 (244)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTT-CCC--CEEEEEEESSGGGSCHHH
T ss_pred             cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecchhhhhccCCCCCeEEecCCccc-ccc--cceEEEEehhhhhCCHHH
Confidence            34579999999999998887    567999999865        578999999854 444  34999999999744   4


Q ss_pred             HHHHHHHHHHhccCC
Q psy10644        182 LAACIKEANRILKLG  196 (196)
Q Consensus       182 ~~~~l~e~~rvLkpg  196 (196)
                      -..+|+++++.|+||
T Consensus       157 ~~~iL~~~~~aL~pg  171 (244)
T d1fp1d2         157 CIEFLSNCHKALSPN  171 (244)
T ss_dssp             HHHHHHHHHHHEEEE
T ss_pred             HHHHHHHHHHHcCCC
Confidence            667899999999986

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.78  E-value=3.2e-08  Score=77.75  Aligned_cols=75  Identities=15%  Similarity=0.114  Sum_probs=61.1

Q ss_pred             CCEEEEEcCCCchhHhhc----cCCeEEEEeCCC--------CCceEEEecCCCCCCCCCceeeEeecccccc-c--CHH
Q psy10644        119 RLVIADLGCGEAKLAAEL----TQHKVHSLDLVA--------LNERVTSCDMTRTPLKPYSVDVAVFCLSLMG-T--DLA  183 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l----~~~~v~giDls~--------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~-~--d~~  183 (196)
                      ..+|||||||+|.++..+    ++.+++++|+.+        .++.+..+|+.. ++|.  .|++++..++|. .  +..
T Consensus        82 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~r~~~~~~d~~~-~~P~--ad~~~l~~vlh~~~d~~~~  158 (243)
T d1kyza2          82 LKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAPSYPGVEHVGGDMFV-SIPK--ADAVFMKWICHDWSDEHCL  158 (243)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTTTTTCCCCTTEEEEECCTTT-CCCC--CSCEECSSSSTTSCHHHHH
T ss_pred             CcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHhhhhcccCCceEEecccccc-cCCC--cceEEEEEEeecCCHHHHH
Confidence            568999999999998888    577999999976        578899999854 4443  477788888863 3  677


Q ss_pred             HHHHHHHHhccCC
Q psy10644        184 ACIKEANRILKLG  196 (196)
Q Consensus       184 ~~l~e~~rvLkpg  196 (196)
                      .+|+++++.|+||
T Consensus       159 ~iL~~~~~al~pg  171 (243)
T d1kyza2         159 KFLKNCYEALPDN  171 (243)
T ss_dssp             HHHHHHHHHCCSS
T ss_pred             HHHHHHHHhcCCC
Confidence            8999999999997

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.75  E-value=6.8e-09  Score=80.45  Aligned_cols=68  Identities=18%  Similarity=0.150  Sum_probs=56.1

Q ss_pred             HHhhcCCCCCEEEEEcCCCchhHhhc---cCCeEEEEeCCC---------------CCceEEEecCCCCCCCCCceeeEe
Q psy10644        111 IQERESKGRLVIADLGCGEAKLAAEL---TQHKVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDVAV  172 (196)
Q Consensus       111 l~~~~~~~~~~ILDlGCG~G~~a~~l---~~~~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~Vi  172 (196)
                      +..+..+++.+|||||||+|..+..|   .+.+|+++|..+               .|+.++.+|......+.+.||.|+
T Consensus        71 l~~L~l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~pfD~Ii  150 (215)
T d1jg1a_          71 LEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAPYDVII  150 (215)
T ss_dssp             HHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEE
T ss_pred             HHhhccCccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcccCcceeEE
Confidence            33445667899999999999998777   466899999997               588999999877555678999999


Q ss_pred             eccccc
Q psy10644        173 FCLSLM  178 (196)
Q Consensus       173 ~~~~lh  178 (196)
                      +..++.
T Consensus       151 v~~a~~  156 (215)
T d1jg1a_         151 VTAGAP  156 (215)
T ss_dssp             ECSBBS
T ss_pred             eecccc
Confidence            988884

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.75  E-value=3e-08  Score=78.04  Aligned_cols=75  Identities=19%  Similarity=0.161  Sum_probs=61.9

Q ss_pred             CCEEEEEcCCCchhHhhc----cCCeEEEEeCCC--------CCceEEEecCCCCCCCCCceeeEeeccccccc---CHH
Q psy10644        119 RLVIADLGCGEAKLAAEL----TQHKVHSLDLVA--------LNERVTSCDMTRTPLKPYSVDVAVFCLSLMGT---DLA  183 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l----~~~~v~giDls~--------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~~---d~~  183 (196)
                      ..+|||||||+|.++..+    ++.+++.+|+.+        .++.++.+|+.. +.+  .+|++++..+||.-   +-.
T Consensus        81 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~rv~~~~gD~f~-~~p--~aD~~~l~~vLHdw~d~~~~  157 (244)
T d1fp2a2          81 LESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFT-SIP--NADAVLLKYILHNWTDKDCL  157 (244)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCBTTEEEEECCTTT-CCC--CCSEEEEESCGGGSCHHHHH
T ss_pred             ceEEEEecCCccHHHHHHHHhCCCCeEEEecCHHHHHhCcccCceEEEecCccc-CCC--CCcEEEEEeecccCChHHHH
Confidence            468999999999998877    567999999865        688999999865 333  47999999999744   345


Q ss_pred             HHHHHHHHhccCC
Q psy10644        184 ACIKEANRILKLG  196 (196)
Q Consensus       184 ~~l~e~~rvLkpg  196 (196)
                      ++|+.+++.|+||
T Consensus       158 ~iL~~~~~al~pg  170 (244)
T d1fp2a2         158 RILKKCKEAVTND  170 (244)
T ss_dssp             HHHHHHHHHHSGG
T ss_pred             HHHHHHHHHcCcc
Confidence            7899999999985

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.72  E-value=8.9e-09  Score=80.16  Aligned_cols=76  Identities=17%  Similarity=0.078  Sum_probs=58.5

Q ss_pred             CCCCCEEEEEcCCCchhHhhcc----------CCeEEEEeCCC--------------------CCceEEEecCCCCCCCC
Q psy10644        116 SKGRLVIADLGCGEAKLAAELT----------QHKVHSLDLVA--------------------LNERVTSCDMTRTPLKP  165 (196)
Q Consensus       116 ~~~~~~ILDlGCG~G~~a~~l~----------~~~v~giDls~--------------------~~~~~~~~d~~~lp~~~  165 (196)
                      .+++.+|||||||+|.++..|.          ..+|+++|.++                    .|+.+..+|......+.
T Consensus        78 l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~~~  157 (223)
T d1r18a_          78 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPN  157 (223)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGG
T ss_pred             cCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEecccccccccc
Confidence            3458999999999999877661          23899999987                    37889999987766667


Q ss_pred             CceeeEeecccccccCHHHHHHHHHHhccCC
Q psy10644        166 YSVDVAVFCLSLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       166 ~sfD~Vi~~~~lh~~d~~~~l~e~~rvLkpg  196 (196)
                      +.||+|++..++....     ..+.+.||||
T Consensus       158 ~~fD~Iiv~~a~~~~p-----~~l~~~Lk~g  183 (223)
T d1r18a_         158 APYNAIHVGAAAPDTP-----TELINQLASG  183 (223)
T ss_dssp             CSEEEEEECSCBSSCC-----HHHHHTEEEE
T ss_pred             cceeeEEEEeechhch-----HHHHHhcCCC
Confidence            8999999998884331     1356677775

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.66  E-value=2.2e-08  Score=76.60  Aligned_cols=57  Identities=21%  Similarity=0.240  Sum_probs=44.4

Q ss_pred             CCCEEEEEcCCCchhHhhc--cC-CeEEEEeCCC--------------CCceEEEecCCCCCCCCCceeeEeecccc
Q psy10644        118 GRLVIADLGCGEAKLAAEL--TQ-HKVHSLDLVA--------------LNERVTSCDMTRTPLKPYSVDVAVFCLSL  177 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l--~~-~~v~giDls~--------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l  177 (196)
                      ++.+|||+|||+|.++..+  .+ .+|+|+|+++              ....++.+|+..+   ++.||+|++.--.
T Consensus        46 ~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~---~~~fD~Vi~nPP~  119 (201)
T d1wy7a1          46 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEF---NSRVDIVIMNPPF  119 (201)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGC---CCCCSEEEECCCC
T ss_pred             CCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhh---CCcCcEEEEcCcc
Confidence            4789999999999997765  44 4899999998              3557777777664   4679999986544

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.66  E-value=5.2e-08  Score=73.92  Aligned_cols=79  Identities=15%  Similarity=0.112  Sum_probs=55.7

Q ss_pred             CCCEEEEEcCCCchh----Hhhc------c--CCeEEEEeCCC-------------------------------------
Q psy10644        118 GRLVIADLGCGEAKL----AAEL------T--QHKVHSLDLVA-------------------------------------  148 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~----a~~l------~--~~~v~giDls~-------------------------------------  148 (196)
                      +..+|+++|||+|.-    +..+      .  ..+|+|.|+++                                     
T Consensus        24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~  103 (193)
T d1af7a2          24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  103 (193)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccc
Confidence            467999999999974    3222      1  23799999998                                     


Q ss_pred             ---------CCceEEEecCCC-CCCCCCceeeEeecccccccC---HHHHHHHHHHhccCC
Q psy10644        149 ---------LNERVTSCDMTR-TPLKPYSVDVAVFCLSLMGTD---LAACIKEANRILKLG  196 (196)
Q Consensus       149 ---------~~~~~~~~d~~~-lp~~~~sfD~Vi~~~~lh~~d---~~~~l~e~~rvLkpg  196 (196)
                               ..+.+...+... .+.+.+.||+|+|.++|++.+   ..++++.+++.|+||
T Consensus       104 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pG  164 (193)
T d1af7a2         104 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPD  164 (193)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEE
T ss_pred             eeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCC
Confidence                     012233333322 234467899999999996553   458999999999997

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.60  E-value=2.1e-08  Score=79.68  Aligned_cols=76  Identities=18%  Similarity=0.127  Sum_probs=58.9

Q ss_pred             CCCCEEEEEcCCCchhHhhc---cCCeEEEEeCCC----------------CCceEEEecCCCCCCCCCceeeEeecccc
Q psy10644        117 KGRLVIADLGCGEAKLAAEL---TQHKVHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAVFCLSL  177 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l---~~~~v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l  177 (196)
                      .++.+|||+|||+|.++..+   ..++|+++|+++                ..+.++.+|+..++. .+.||.|++..--
T Consensus       106 ~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~-~~~~D~Ii~~~p~  184 (260)
T d2frna1         106 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYVV  184 (260)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCCS
T ss_pred             CCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhcc-CCCCCEEEECCCC
Confidence            34889999999999998877   346999999999                357889999987754 5789998865322


Q ss_pred             cccCHHHHHHHHHHhccCC
Q psy10644        178 MGTDLAACIKEANRILKLG  196 (196)
Q Consensus       178 h~~d~~~~l~e~~rvLkpg  196 (196)
                         ....++.++.++||+|
T Consensus       185 ---~~~~~l~~a~~~l~~g  200 (260)
T d2frna1         185 ---RTHEFIPKALSIAKDG  200 (260)
T ss_dssp             ---SGGGGHHHHHHHEEEE
T ss_pred             ---chHHHHHHHHhhcCCC
Confidence               2345677788888875

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.60  E-value=3e-08  Score=75.40  Aligned_cols=90  Identities=18%  Similarity=0.247  Sum_probs=68.4

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC--------------CCceEEEecCCCC----
Q psy10644        104 VDIIIKSIQERESKGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA--------------LNERVTSCDMTRT----  161 (196)
Q Consensus       104 ~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~--------------~~~~~~~~d~~~l----  161 (196)
                      .+.+++++   .+.++..|||++||+|..+..+    ++++|+|+|.++              .++.++.++..++    
T Consensus        12 l~evi~~l---~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~   88 (192)
T d1m6ya2          12 VREVIEFL---KPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLL   88 (192)
T ss_dssp             HHHHHHHH---CCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHH
T ss_pred             HHHHHHhh---CCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHH
Confidence            45566666   5566889999999999988777    567999999998              3677888876553    


Q ss_pred             -CCCCCceeeEeecccc--c-------cc-CHHHHHHHHHHhccCC
Q psy10644        162 -PLKPYSVDVAVFCLSL--M-------GT-DLAACIKEANRILKLG  196 (196)
Q Consensus       162 -p~~~~sfD~Vi~~~~l--h-------~~-d~~~~l~e~~rvLkpg  196 (196)
                       .+..++||.|++-+.+  +       .. ....+|..+.++|+||
T Consensus        89 ~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~g  134 (192)
T d1m6ya2          89 KTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPG  134 (192)
T ss_dssp             HHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEE
T ss_pred             HHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCC
Confidence             2446899999887665  2       22 4667888888898875

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.54  E-value=1.7e-08  Score=73.74  Aligned_cols=79  Identities=14%  Similarity=0.049  Sum_probs=54.8

Q ss_pred             CCCEEEEEcCCCchhHhhc--cC-CeEEEEeCCC----------------CCceEEEecCCC-CCCCCCceeeEeecccc
Q psy10644        118 GRLVIADLGCGEAKLAAEL--TQ-HKVHSLDLVA----------------LNERVTSCDMTR-TPLKPYSVDVAVFCLSL  177 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l--~~-~~v~giDls~----------------~~~~~~~~d~~~-lp~~~~sfD~Vi~~~~l  177 (196)
                      ++.+|||+|||+|.++..+  .+ .+|+++|.++                .++.++++|+.. ++...++||+|++---.
T Consensus        14 ~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPPy   93 (152)
T d2esra1          14 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPPY   93 (152)
T ss_dssp             CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCSS
T ss_pred             CCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEechhh
Confidence            3789999999999998755  33 4999999998                347888888755 34557889999885433


Q ss_pred             cccCHHHHHHHHH--HhccCC
Q psy10644        178 MGTDLAACIKEAN--RILKLG  196 (196)
Q Consensus       178 h~~d~~~~l~e~~--rvLkpg  196 (196)
                      ........+..+.  ++|+||
T Consensus        94 ~~~~~~~~l~~i~~~~~L~~~  114 (152)
T d2esra1          94 AKETIVATIEALAAKNLLSEQ  114 (152)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEE
T ss_pred             ccchHHHHHHHHHHCCCcCCC
Confidence            2223344444443  456653

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.48  E-value=4.8e-08  Score=76.94  Aligned_cols=74  Identities=18%  Similarity=0.213  Sum_probs=59.4

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC-------------CCceEEEecCCCCCCCCCce
Q psy10644        104 VDIIIKSIQERESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA-------------LNERVTSCDMTRTPLKPYSV  168 (196)
Q Consensus       104 ~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~-------------~~~~~~~~d~~~lp~~~~sf  168 (196)
                      .+.+++.+   ...++.+|||||||+|.++..|  .+.+|+++|+++             .++.++.+|+..++++...+
T Consensus        18 i~kIv~~~---~~~~~d~VLEIGpG~G~LT~~L~~~~~~v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~l~~~~~~~~~   94 (245)
T d1yuba_          18 LNQIIKQL---NLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQR   94 (245)
T ss_dssp             HHHHHHHC---CCCSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSE
T ss_pred             HHHHHHhc---CCCCCCeEEEECCCccHHHHHHHhhcCceeEeeecccchhhhhhhhhhccchhhhhhhhhcccccccee
Confidence            44455444   4455789999999999999999  567999999998             36888999999988888888


Q ss_pred             eeEeeccccccc
Q psy10644        169 DVAVFCLSLMGT  180 (196)
Q Consensus       169 D~Vi~~~~lh~~  180 (196)
                      +.|+++.-.|..
T Consensus        95 ~~vv~NLPY~Is  106 (245)
T d1yuba_          95 YKIVGNIPYHLS  106 (245)
T ss_dssp             EEEEEECCSSSC
T ss_pred             eeEeeeeehhhh
Confidence            888888776644

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=98.46  E-value=2.1e-08  Score=81.92  Aligned_cols=79  Identities=19%  Similarity=0.042  Sum_probs=60.7

Q ss_pred             CCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC---------------CCceEEEecCCC----CCCCCCceeeEeeccc
Q psy10644        118 GRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA---------------LNERVTSCDMTR----TPLKPYSVDVAVFCLS  176 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~---------------~~~~~~~~d~~~----lp~~~~sfD~Vi~~~~  176 (196)
                      ++.+|||++||+|.++..+  .+.+|+++|+|+               .++.++++|+.+    ++...+.||+|++.--
T Consensus       145 ~g~rVLDl~~gtG~~s~~~a~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~DpP  224 (318)
T d1wxxa2         145 RGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDPP  224 (318)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCC
T ss_pred             CCCeeeccCCCCcHHHHHHHhcCCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEcCC
Confidence            3789999999999998887  455999999999               467888888754    3445678999997432


Q ss_pred             c--------c--ccCHHHHHHHHHHhccCC
Q psy10644        177 L--------M--GTDLAACIKEANRILKLG  196 (196)
Q Consensus       177 l--------h--~~d~~~~l~e~~rvLkpg  196 (196)
                      .        .  ..++..++..+.++||||
T Consensus       225 ~~~~~~~~~~~~~~~~~~l~~~a~~lLkpG  254 (318)
T d1wxxa2         225 AFAKGKKDVERAYRAYKEVNLRAIKLLKEG  254 (318)
T ss_dssp             CSCCSTTSHHHHHHHHHHHHHHHHHTEEEE
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            1        1  114567888999999986

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.37  E-value=8.4e-08  Score=78.39  Aligned_cols=80  Identities=11%  Similarity=-0.031  Sum_probs=59.8

Q ss_pred             CCCCEEEEEcCCCchhHhhc--cC-CeEEEEeCCC----------------CCceEEEecCCC----CCCCCCceeeEee
Q psy10644        117 KGRLVIADLGCGEAKLAAEL--TQ-HKVHSLDLVA----------------LNERVTSCDMTR----TPLKPYSVDVAVF  173 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l--~~-~~v~giDls~----------------~~~~~~~~d~~~----lp~~~~sfD~Vi~  173 (196)
                      .++.+|||+|||+|.++..+  .+ .+|+++|+++                .++.++++|+..    ++.....||+|++
T Consensus       144 ~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi~  223 (324)
T d2as0a2         144 QPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL  223 (324)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchhc
Confidence            35789999999999998877  33 4899999999                256788888743    3345678999997


Q ss_pred             ccc---cccc-------CHHHHHHHHHHhccCC
Q psy10644        174 CLS---LMGT-------DLAACIKEANRILKLG  196 (196)
Q Consensus       174 ~~~---lh~~-------d~~~~l~e~~rvLkpg  196 (196)
                      .--   .+..       ++..++..+.++||||
T Consensus       224 DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pG  256 (324)
T d2as0a2         224 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDG  256 (324)
T ss_dssp             CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEE
T ss_pred             CCccccCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            432   2211       4566888889999986

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.33  E-value=4.3e-07  Score=70.92  Aligned_cols=65  Identities=14%  Similarity=0.083  Sum_probs=51.8

Q ss_pred             hcCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC-------------CCceEEEecCCCCCCCCCceeeEeeccccc
Q psy10644        114 RESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA-------------LNERVTSCDMTRTPLKPYSVDVAVFCLSLM  178 (196)
Q Consensus       114 ~~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~-------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh  178 (196)
                      ....++.+|||||||+|.++..|  .+.+|+++|+++             .++.++.+|+..++++......|+++.-.+
T Consensus        17 ~~~~~~d~VlEIGpG~G~LT~~Ll~~~~~v~avE~D~~l~~~l~~~~~~~~n~~i~~~D~l~~~~~~~~~~~vv~NLPYn   96 (235)
T d1qama_          17 IRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQSYKIFGNIPYN   96 (235)
T ss_dssp             CCCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCCCEEEEECCGG
T ss_pred             cCCCCCCeEEEECCCchHHHHHHHhCcCceEEEeeccchHHHHHHHhhcccchhhhhhhhhhccccccccceeeeeehhh
Confidence            34456899999999999999999  567999999998             578999999988887765545566655444

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.30  E-value=2.7e-07  Score=71.08  Aligned_cols=88  Identities=11%  Similarity=0.132  Sum_probs=60.6

Q ss_pred             HHHHHHHhhcCCCCCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC----------------CCceEEEecCCC-CC-
Q psy10644        106 IIIKSIQERESKGRLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA----------------LNERVTSCDMTR-TP-  162 (196)
Q Consensus       106 ~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~----------------~~~~~~~~d~~~-lp-  162 (196)
                      .++..+.....  ..+|||||||+|..+..|     .+.+|+++|+++                .++.++.+|..+ ++ 
T Consensus        46 ~lL~~lv~~~k--pk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~  123 (214)
T d2cl5a1          46 QIMDAVIREYS--PSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQ  123 (214)
T ss_dssp             HHHHHHHHHHC--CSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGG
T ss_pred             HHHHHHHHhhC--CCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccc
Confidence            34444433332  469999999999888777     356999999998                358888888644 22 


Q ss_pred             ----CCCCceeeEeeccccccc-CHHHHHHHHHHhccCC
Q psy10644        163 ----LKPYSVDVAVFCLSLMGT-DLAACIKEANRILKLG  196 (196)
Q Consensus       163 ----~~~~sfD~Vi~~~~lh~~-d~~~~l~e~~rvLkpg  196 (196)
                          +..+.||+|++-. -|.. .....+.++.++||||
T Consensus       124 l~~~~~~~~~D~ifiD~-~~~~~~~~~~l~~~~~lLkpG  161 (214)
T d2cl5a1         124 LKKKYDVDTLDMVFLDH-WKDRYLPDTLLLEKCGLLRKG  161 (214)
T ss_dssp             HHHHSCCCCEEEEEECS-CGGGHHHHHHHHHHTTCEEEE
T ss_pred             hhhcccccccceeeecc-cccccccHHHHHHHhCccCCC
Confidence                3457899987652 2322 2334577888899986

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=98.26  E-value=6.5e-07  Score=67.08  Aligned_cols=77  Identities=14%  Similarity=0.031  Sum_probs=55.5

Q ss_pred             CCEEEEEcCCCchhHhhc--cCC-eEEEEeCCC---------------CCceEEEecCCC-CCCCCCceeeEeecccccc
Q psy10644        119 RLVIADLGCGEAKLAAEL--TQH-KVHSLDLVA---------------LNERVTSCDMTR-TPLKPYSVDVAVFCLSLMG  179 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l--~~~-~v~giDls~---------------~~~~~~~~d~~~-lp~~~~sfD~Vi~~~~lh~  179 (196)
                      +.+|||++||+|.++...  .++ +|+.+|.++               .+..++.+|+.. +......||+|++---...
T Consensus        44 ~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY~~  123 (183)
T d2fpoa1          44 DAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFRR  123 (183)
T ss_dssp             TCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSST
T ss_pred             hhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEEcCcccc
Confidence            679999999999998765  344 899999998               467778888644 3445678999998755433


Q ss_pred             cCHHHHHHHHHH--hccC
Q psy10644        180 TDLAACIKEANR--ILKL  195 (196)
Q Consensus       180 ~d~~~~l~e~~r--vLkp  195 (196)
                      ......+..+.+  +|++
T Consensus       124 ~~~~~~l~~l~~~~~L~~  141 (183)
T d2fpoa1         124 GLLEETINLLEDNGWLAD  141 (183)
T ss_dssp             TTHHHHHHHHHHTTCEEE
T ss_pred             chHHHHHHHHHHCCCCCC
Confidence            345566665554  3554

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=98.21  E-value=5.8e-07  Score=66.69  Aligned_cols=78  Identities=19%  Similarity=0.132  Sum_probs=49.4

Q ss_pred             CCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC--------------CCceEEEecCCC----CCCCCCceeeEeecccc
Q psy10644        118 GRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA--------------LNERVTSCDMTR----TPLKPYSVDVAVFCLSL  177 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~--------------~~~~~~~~d~~~----lp~~~~sfD~Vi~~~~l  177 (196)
                      ++.+|||+|||+|.++..+  .+.+|+++|.++              .+.++...+...    ......+||+|++.--+
T Consensus        41 ~g~~vLDl~~G~G~~~i~a~~~ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~DPPY  120 (171)
T d1ws6a1          41 RRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPPY  120 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCCT
T ss_pred             CCCeEEEeccccchhhhhhhhccchhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEEcccc
Confidence            4779999999999998766  677999999999              123444444322    13455789999875333


Q ss_pred             cccCHHHHHHHHH--HhccCC
Q psy10644        178 MGTDLAACIKEAN--RILKLG  196 (196)
Q Consensus       178 h~~d~~~~l~e~~--rvLkpg  196 (196)
                      +. +..+.+.++.  .+|+||
T Consensus       121 ~~-~~~~~l~~l~~~~ll~~~  140 (171)
T d1ws6a1         121 AM-DLAALFGELLASGLVEAG  140 (171)
T ss_dssp             TS-CTTHHHHHHHHHTCEEEE
T ss_pred             cc-CHHHHHHHHHHcCCcCCC
Confidence            21 2233344332  356653

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.19  E-value=6.1e-07  Score=72.68  Aligned_cols=79  Identities=13%  Similarity=-0.006  Sum_probs=57.8

Q ss_pred             CCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC-----------------CCceEEEecCCCC----CCCCCceeeEeec
Q psy10644        118 GRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA-----------------LNERVTSCDMTRT----PLKPYSVDVAVFC  174 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~-----------------~~~~~~~~d~~~l----p~~~~sfD~Vi~~  174 (196)
                      ++.+|||+.||+|.++..+  .+.+|+++|.|+                 .++++++.|+..+    ......||+||+-
T Consensus       132 ~~~rVLdlf~~tG~~sl~aa~~GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~IilD  211 (309)
T d2igta1         132 RPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILTD  211 (309)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEEC
T ss_pred             CCCeEEEecCCCcHHHHHHHhCCCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEEEEC
Confidence            3779999999999998887  567999999998                 2578888887542    2235789999973


Q ss_pred             ---ccc------c-cc-CHHHHHHHHHHhccCC
Q psy10644        175 ---LSL------M-GT-DLAACIKEANRILKLG  196 (196)
Q Consensus       175 ---~~l------h-~~-d~~~~l~e~~rvLkpg  196 (196)
                         ++-      . .. +....+..+.++|+||
T Consensus       212 PP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~  244 (309)
T d2igta1         212 PPKFGRGTHGEVWQLFDHLPLMLDICREILSPK  244 (309)
T ss_dssp             CCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTT
T ss_pred             CCcccccccchhHHHHHHHHHHHHHHHHhcCCC
Confidence               221      1 11 4456677788888875

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=98.19  E-value=1e-06  Score=71.62  Aligned_cols=79  Identities=15%  Similarity=0.144  Sum_probs=58.9

Q ss_pred             CCCEEEEEcCCCchhHhhc--cCC-eEEEEeCCC-----------------CCceEEEecCCCC----CCCCCceeeEee
Q psy10644        118 GRLVIADLGCGEAKLAAEL--TQH-KVHSLDLVA-----------------LNERVTSCDMTRT----PLKPYSVDVAVF  173 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l--~~~-~v~giDls~-----------------~~~~~~~~d~~~l----p~~~~sfD~Vi~  173 (196)
                      ++.+|||+.||+|.++..+  .+. .|+++|+++                 .++.++++|+...    .-....||+|++
T Consensus       144 ~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii~  223 (317)
T d2b78a2         144 AGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIII  223 (317)
T ss_dssp             BTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEEEE
Confidence            3789999999999998776  344 899999998                 2567888887432    234568999997


Q ss_pred             cc--------ccc-cc-CHHHHHHHHHHhccCC
Q psy10644        174 CL--------SLM-GT-DLAACIKEANRILKLG  196 (196)
Q Consensus       174 ~~--------~lh-~~-d~~~~l~e~~rvLkpg  196 (196)
                      --        .++ .. ++..++..+.++|+||
T Consensus       224 DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pg  256 (317)
T d2b78a2         224 DPPSFARNKKEVFSVSKDYHKLIRQGLEILSEN  256 (317)
T ss_dssp             CCCCC-----CCCCHHHHHHHHHHHHHHTEEEE
T ss_pred             cChhhccchhHHHHHHHHHHHHHHHHHHHcCCC
Confidence            31        121 22 5778899999999986

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=1.8e-06  Score=67.85  Aligned_cols=61  Identities=10%  Similarity=-0.020  Sum_probs=43.8

Q ss_pred             CCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC----------------CCceEEEecCCCC------CCCCCceeeE
Q psy10644        118 GRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA----------------LNERVTSCDMTRT------PLKPYSVDVA  171 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~----------------~~~~~~~~d~~~l------p~~~~sfD~V  171 (196)
                      +..+|||||||+|.++..|    ++++|+|+|+++                ..+.+...+....      ...++.||+|
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i  140 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC  140 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred             ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeEE
Confidence            3568999999999887776    678999999998                2345555443221      1235689999


Q ss_pred             eeccccc
Q psy10644        172 VFCLSLM  178 (196)
Q Consensus       172 i~~~~lh  178 (196)
                      +|+--++
T Consensus       141 vsNPPY~  147 (250)
T d2h00a1         141 MCNPPFF  147 (250)
T ss_dssp             EECCCCC
T ss_pred             EecCccc
Confidence            9876554

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=3.4e-06  Score=64.97  Aligned_cols=88  Identities=16%  Similarity=0.094  Sum_probs=64.2

Q ss_pred             HHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC----------------CCceEEEecCCC-CC
Q psy10644        105 DIIIKSIQERESKGRLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA----------------LNERVTSCDMTR-TP  162 (196)
Q Consensus       105 ~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~----------------~~~~~~~~d~~~-lp  162 (196)
                      ..++..|.+...  ..+|||||||+|..+..+     .+.+|+++|.++                ..+.++.+|+.+ ++
T Consensus        48 g~lL~~L~~~~~--~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~  125 (219)
T d2avda1          48 AQLLANLARLIQ--AKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLD  125 (219)
T ss_dssp             HHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHH
T ss_pred             HHHHHHHHHccC--CCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcch
Confidence            445555554433  569999999999988887     256999999999                357888888633 22


Q ss_pred             -----CCCCceeeEeecccccccCHHHHHHHHHHhccCC
Q psy10644        163 -----LKPYSVDVAVFCLSLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       163 -----~~~~sfD~Vi~~~~lh~~d~~~~l~e~~rvLkpg  196 (196)
                           ...++||+|+.-..  ..+....+..+.++|+||
T Consensus       126 ~~~~~~~~~~fD~ifiD~d--k~~y~~~~~~~~~lL~~G  162 (219)
T d2avda1         126 ELLAAGEAGTFDVAVVDAD--KENCSAYYERCLQLLRPG  162 (219)
T ss_dssp             HHHHTTCTTCEEEEEECSC--STTHHHHHHHHHHHEEEE
T ss_pred             hhhhhcccCCccEEEEeCC--HHHHHHHHHHHHHHhcCC
Confidence                 34678999887532  226677888889999986

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.09  E-value=7e-06  Score=62.04  Aligned_cols=61  Identities=7%  Similarity=-0.007  Sum_probs=44.5

Q ss_pred             CCCCCEEEEEcCCCchhHhhc-----cCCeEEEEeCCCC------CceEEEecCCCCCCCCCceeeEeecccc
Q psy10644        116 SKGRLVIADLGCGEAKLAAEL-----TQHKVHSLDLVAL------NERVTSCDMTRTPLKPYSVDVAVFCLSL  177 (196)
Q Consensus       116 ~~~~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~~------~~~~~~~d~~~lp~~~~sfD~Vi~~~~l  177 (196)
                      ..++.+|||.|||+|.++..+     ....++|+|+++.      ...++.+|..... ....||+|++..-+
T Consensus        17 ~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~~~~~~~~~~~~~~-~~~~fd~ii~npP~   88 (223)
T d2ih2a1          17 APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPPWAEGILADFLLWE-PGEAFDLILGNPPY   88 (223)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCTTEEEEESCGGGCC-CSSCEEEEEECCCC
T ss_pred             CCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhcccceeeeeehhccc-cccccceecccCcc
Confidence            345789999999999987665     3458999999993      3355666654433 35789999987554

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=98.05  E-value=6.6e-06  Score=61.40  Aligned_cols=80  Identities=15%  Similarity=0.226  Sum_probs=57.8

Q ss_pred             CCCCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC----CCceEEEecCCCCC--------CCCCceeeEeecccccc
Q psy10644        117 KGRLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA----LNERVTSCDMTRTP--------LKPYSVDVAVFCLSLMG  179 (196)
Q Consensus       117 ~~~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~----~~~~~~~~d~~~lp--------~~~~sfD~Vi~~~~lh~  179 (196)
                      +++.+||||||+.|.|++.+     ....|+++|+.+    .++.++.+|+....        ...+.||+|++-.+...
T Consensus        21 k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~~i~~~~~~~~d~~~~~~~~~~~~~~~~~~~DlVlSD~ap~~  100 (180)
T d1ej0a_          21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDMAPNM  100 (180)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCCCTTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEECCCCCC
T ss_pred             CCCCeEEEEeccCCcceEEEEeeccccceEEEeecccccccCCceEeecccccchhhhhhhhhccCcceeEEEecccchh
Confidence            45789999999999999877     346899999998    57888898885422        23568999999877632


Q ss_pred             c-----CH-------HHHHHHHHHhccCC
Q psy10644        180 T-----DL-------AACIKEANRILKLG  196 (196)
Q Consensus       180 ~-----d~-------~~~l~e~~rvLkpg  196 (196)
                      +     |.       ...+.-+.++||+|
T Consensus       101 sg~~~~d~~~~~~L~~~~l~~a~~~Lk~g  129 (180)
T d1ej0a_         101 SGTPAVDIPRAMYLVELALEMCRDVLAPG  129 (180)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHHHHHEEEE
T ss_pred             cccchhHHHHHHHHHHHHHHhhhhccCCC
Confidence            1     21       23455566677664

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.02  E-value=1e-05  Score=61.76  Aligned_cols=86  Identities=15%  Similarity=0.082  Sum_probs=59.9

Q ss_pred             HHHHHHHhhcCCCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC---------------CCceEEEecCCCCCCCCC
Q psy10644        106 IIIKSIQERESKGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA---------------LNERVTSCDMTRTPLKPY  166 (196)
Q Consensus       106 ~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~---------------~~~~~~~~d~~~lp~~~~  166 (196)
                      .+++-+.-...-++.+|+|||+|.|.-+..+    +..+|+.+|.+.               .|+.++...++++. ...
T Consensus        53 Hi~DSl~~~~~~~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~-~~~  131 (207)
T d1jsxa_          53 HILDSIVVAPYLQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP-SEP  131 (207)
T ss_dssp             HHHHHHHHGGGCCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC-CCS
T ss_pred             HhcchHhhhhhhcCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhc-ccc
Confidence            4444443322223569999999999776555    678999999998               47888888898865 356


Q ss_pred             ceeeEeecccccccCHHHHHHHHHHhccC
Q psy10644        167 SVDVAVFCLSLMGTDLAACIKEANRILKL  195 (196)
Q Consensus       167 sfD~Vi~~~~lh~~d~~~~l~e~~rvLkp  195 (196)
                      +||+|++..+   .....++.-+...|++
T Consensus       132 ~fD~V~sRA~---~~~~~ll~~~~~~l~~  157 (207)
T d1jsxa_         132 PFDGVISRAF---ASLNDMVSWCHHLPGE  157 (207)
T ss_dssp             CEEEEECSCS---SSHHHHHHHHTTSEEE
T ss_pred             ccceehhhhh---cCHHHHHHHHHHhcCC
Confidence            8999988665   2445555555555554

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.95  E-value=3.2e-06  Score=63.23  Aligned_cols=78  Identities=15%  Similarity=0.109  Sum_probs=56.2

Q ss_pred             CCCEEEEEcCCCchhHhhc--cCC-eEEEEeCCC----------------CCceEEEecCCCC----CCCCCceeeEeec
Q psy10644        118 GRLVIADLGCGEAKLAAEL--TQH-KVHSLDLVA----------------LNERVTSCDMTRT----PLKPYSVDVAVFC  174 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l--~~~-~v~giDls~----------------~~~~~~~~d~~~l----p~~~~sfD~Vi~~  174 (196)
                      .+.+|||+.||+|.++...  .|+ +|+++|.++                .++.++.+|+...    .-....||+|++.
T Consensus        41 ~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIflD  120 (182)
T d2fhpa1          41 DGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLD  120 (182)
T ss_dssp             SSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceEEec
Confidence            3789999999999998866  344 899999998                3677888887542    2245689999876


Q ss_pred             ccccccCHHHHHHHHHH--hccC
Q psy10644        175 LSLMGTDLAACIKEANR--ILKL  195 (196)
Q Consensus       175 ~~lh~~d~~~~l~e~~r--vLkp  195 (196)
                      --....+....+..+..  +|++
T Consensus       121 PPY~~~~~~~~l~~i~~~~~L~~  143 (182)
T d2fhpa1         121 PPYAKQEIVSQLEKMLERQLLTN  143 (182)
T ss_dssp             CCGGGCCHHHHHHHHHHTTCEEE
T ss_pred             hhhhhhHHHHHHHHHHHCCCCCC
Confidence            54444466677777654  4654

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=97.94  E-value=6.6e-06  Score=65.28  Aligned_cols=75  Identities=16%  Similarity=0.182  Sum_probs=50.3

Q ss_pred             CCChHHHHHHHHHhh-cCCCCCEEEEEcCCCchhHhhc---cCCeEEEEeCCC----------------CCceEEEecCC
Q psy10644        100 PINPVDIIIKSIQER-ESKGRLVIADLGCGEAKLAAEL---TQHKVHSLDLVA----------------LNERVTSCDMT  159 (196)
Q Consensus       100 ~~~~~~~~~~~l~~~-~~~~~~~ILDlGCG~G~~a~~l---~~~~v~giDls~----------------~~~~~~~~d~~  159 (196)
                      |....+.+++.+... ...+..+|+|+|||+|..+..+   ++.+|+++|+|+                ..+.+..+|..
T Consensus        91 PRpeTE~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~  170 (271)
T d1nv8a_          91 PRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFL  170 (271)
T ss_dssp             CCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTT
T ss_pred             chhhhhhhhhhhhhhhccccccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccc
Confidence            444455555544321 1122468999999999886666   677999999999                23455666664


Q ss_pred             C-CCCCCCceeeEeec
Q psy10644        160 R-TPLKPYSVDVAVFC  174 (196)
Q Consensus       160 ~-lp~~~~sfD~Vi~~  174 (196)
                      + ++...+.||+|+++
T Consensus       171 ~~~~~~~~~fDlIVsN  186 (271)
T d1nv8a_         171 EPFKEKFASIEMILSN  186 (271)
T ss_dssp             GGGGGGTTTCCEEEEC
T ss_pred             cccccccCcccEEEEc
Confidence            4 33334789999987

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=97.86  E-value=1.2e-05  Score=65.00  Aligned_cols=78  Identities=17%  Similarity=0.074  Sum_probs=58.4

Q ss_pred             CCEEEEEcCCCchhHhhc----cCCeEEEEeCCC--------------------CCceEEEecCCC-CCCCCCceeeEee
Q psy10644        119 RLVIADLGCGEAKLAAEL----TQHKVHSLDLVA--------------------LNERVTSCDMTR-TPLKPYSVDVAVF  173 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l----~~~~v~giDls~--------------------~~~~~~~~d~~~-lp~~~~sfD~Vi~  173 (196)
                      ..+||.||+|.|..++.+    ...+|+++|+++                    ++++++.+|... +.-.++.||+|++
T Consensus        78 pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi~  157 (312)
T d1uira_          78 PKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVII  157 (312)
T ss_dssp             CCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEEE
T ss_pred             cceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEEEE
Confidence            568999999999998877    234899999998                    367888888754 2334578999996


Q ss_pred             ccc--cc------ccCHHHHHHHHHHhccCC
Q psy10644        174 CLS--LM------GTDLAACIKEANRILKLG  196 (196)
Q Consensus       174 ~~~--lh------~~d~~~~l~e~~rvLkpg  196 (196)
                      -..  ..      ..--.++++.+++.|+||
T Consensus       158 D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~  188 (312)
T d1uira_         158 DLTDPVGEDNPARLLYTVEFYRLVKAHLNPG  188 (312)
T ss_dssp             ECCCCBSTTCGGGGGSSHHHHHHHHHTEEEE
T ss_pred             eCCCcccccchhhhhhhHHHHHHHHHhcCCC
Confidence            432  11      112367999999999986

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.72  E-value=2.1e-05  Score=62.43  Aligned_cols=79  Identities=13%  Similarity=0.017  Sum_probs=56.8

Q ss_pred             CCCEEEEEcCCCchhHhhc---cCCeEEEEeCCC-------------------------CCceEEEecCCCCCCCCCcee
Q psy10644        118 GRLVIADLGCGEAKLAAEL---TQHKVHSLDLVA-------------------------LNERVTSCDMTRTPLKPYSVD  169 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l---~~~~v~giDls~-------------------------~~~~~~~~d~~~lp~~~~sfD  169 (196)
                      +..+||-||+|.|..+..+   ...+|+.+|+++                         ++++++.+|....--..++||
T Consensus        72 ~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~yD  151 (276)
T d1mjfa_          72 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGFD  151 (276)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCEE
T ss_pred             CCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCCCC
Confidence            3579999999999998887   234899999997                         246778888643212357899


Q ss_pred             eEeeccccc-cc----CHHHHHHHHHHhccCC
Q psy10644        170 VAVFCLSLM-GT----DLAACIKEANRILKLG  196 (196)
Q Consensus       170 ~Vi~~~~lh-~~----d~~~~l~e~~rvLkpg  196 (196)
                      +|++-..-. ..    --.++++.+++.|+||
T Consensus       152 vIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~  183 (276)
T d1mjfa_         152 VIIADSTDPVGPAKVLFSEEFYRYVYDALNNP  183 (276)
T ss_dssp             EEEEECCCCC-----TTSHHHHHHHHHHEEEE
T ss_pred             EEEEeCCCCCCCcccccCHHHHHhhHhhcCCC
Confidence            998644321 11    2367999999999985

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.71  E-value=3.8e-05  Score=59.19  Aligned_cols=88  Identities=9%  Similarity=-0.007  Sum_probs=63.7

Q ss_pred             HHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC----------------CCceEEEecCCC-CC
Q psy10644        105 DIIIKSIQERESKGRLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA----------------LNERVTSCDMTR-TP  162 (196)
Q Consensus       105 ~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~----------------~~~~~~~~d~~~-lp  162 (196)
                      ..++..|.+...  ..+|||||+++|..+..|     .+.+|+++|.++                ..+.++.+++.+ ++
T Consensus        48 g~~L~~L~~~~~--~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~  125 (227)
T d1susa1          48 GQFLSMLLKLIN--AKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLD  125 (227)
T ss_dssp             HHHHHHHHHHHT--CCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHH
T ss_pred             HHHHHHHHHhcC--CCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHH
Confidence            345555544333  569999999999887777     357999999999                357788887643 22


Q ss_pred             ------CCCCceeeEeecccccccCHHHHHHHHHHhccCC
Q psy10644        163 ------LKPYSVDVAVFCLSLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       163 ------~~~~sfD~Vi~~~~lh~~d~~~~l~e~~rvLkpg  196 (196)
                            ...++||+|+.-. - ..+....+..+.++|+||
T Consensus       126 ~l~~~~~~~~~fD~iFiDa-~-k~~y~~~~e~~~~ll~~g  163 (227)
T d1susa1         126 EMIKDEKNHGSYDFIFVDA-D-KDNYLNYHKRLIDLVKVG  163 (227)
T ss_dssp             HHHHCGGGTTCBSEEEECS-C-STTHHHHHHHHHHHBCTT
T ss_pred             HHHhccccCCceeEEEecc-c-hhhhHHHHHHHHhhcCCC
Confidence                  1356899988743 2 236788888999999987

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.71  E-value=3.5e-05  Score=62.03  Aligned_cols=80  Identities=23%  Similarity=0.223  Sum_probs=55.1

Q ss_pred             CCCCCEEEEEcCCCchhHhhc---------cCCeEEEEeCCC--------------CCceEEEecCCCCCCCCCceeeEe
Q psy10644        116 SKGRLVIADLGCGEAKLAAEL---------TQHKVHSLDLVA--------------LNERVTSCDMTRTPLKPYSVDVAV  172 (196)
Q Consensus       116 ~~~~~~ILDlGCG~G~~a~~l---------~~~~v~giDls~--------------~~~~~~~~d~~~lp~~~~sfD~Vi  172 (196)
                      ..++.+|||.|||+|.++..+         ....++|+|+++              ....+...|... ..+...||+|+
T Consensus       115 ~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~~~~fD~vi  193 (328)
T d2f8la1         115 KKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLA-NLLVDPVDVVI  193 (328)
T ss_dssp             TCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTS-CCCCCCEEEEE
T ss_pred             CCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhcccccc-ccccccccccc
Confidence            345678999999999997665         123799999998              345556666533 23457899999


Q ss_pred             ecccc--ccc-----------------CHHHHHHHHHHhccCC
Q psy10644        173 FCLSL--MGT-----------------DLAACIKEANRILKLG  196 (196)
Q Consensus       173 ~~~~l--h~~-----------------d~~~~l~e~~rvLkpg  196 (196)
                      +.--+  +..                 -...++..+.+.|+||
T Consensus       194 ~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~  236 (328)
T d2f8la1         194 SDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPG  236 (328)
T ss_dssp             EECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEE
T ss_pred             cCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCC
Confidence            98544  111                 1234788888998875

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=97.68  E-value=0.00018  Score=55.51  Aligned_cols=77  Identities=14%  Similarity=0.103  Sum_probs=51.5

Q ss_pred             CCEEEEEcCCCchhHhhc--------cCCeEEEEeCCC----------CCceEEEecCCCCC----CCCCceeeEeeccc
Q psy10644        119 RLVIADLGCGEAKLAAEL--------TQHKVHSLDLVA----------LNERVTSCDMTRTP----LKPYSVDVAVFCLS  176 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l--------~~~~v~giDls~----------~~~~~~~~d~~~lp----~~~~sfD~Vi~~~~  176 (196)
                      ..+|||||++.|..+..+        ...+|+|+|+.+          .++.++.+|..+..    +....+|+|+. ..
T Consensus        81 Pk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~~~~~I~~i~gDs~~~~~~~~l~~~~~dlIfI-D~  159 (232)
T d2bm8a1          81 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFI-DN  159 (232)
T ss_dssp             CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEE-ES
T ss_pred             CCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhccccceeeeecccccHHHHHHHHhcCCCEEEE-cC
Confidence            458999999999765443        356999999976          57889999875432    34556788665 44


Q ss_pred             ccccCHHHHHHHHHHhccCC
Q psy10644        177 LMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       177 lh~~d~~~~l~e~~rvLkpg  196 (196)
                      -|..+....--+...+|++|
T Consensus       160 ~H~~~~v~~~~~~~~lLk~G  179 (232)
T d2bm8a1         160 AHANTFNIMKWAVDHLLEEG  179 (232)
T ss_dssp             SCSSHHHHHHHHHHHTCCTT
T ss_pred             CcchHHHHHHHHHhcccCcC
Confidence            46542222212456789887

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=0.0001  Score=58.45  Aligned_cols=62  Identities=23%  Similarity=0.254  Sum_probs=48.0

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC----------------CCceEEEecCCCCCCCCCceeeEeeccc
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAVFCLS  176 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~  176 (196)
                      ...++..|||||||.|.++..|  .+.+|+++++++                .++.++.+|+....++.  ++.||.+.-
T Consensus        18 ~~~~~d~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~~~--~~~vV~NLP   95 (278)
T d1zq9a1          18 ALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPF--FDTCVANLP   95 (278)
T ss_dssp             CCCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCC--CSEEEEECC
T ss_pred             CCCCCCEEEEECCCchHHHHHHHhcCCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhhhh--hhhhhcchH
Confidence            4445789999999999999999  567999999987                26788999987766543  456776654


Q ss_pred             cc
Q psy10644        177 LM  178 (196)
Q Consensus       177 lh  178 (196)
                      .+
T Consensus        96 Y~   97 (278)
T d1zq9a1          96 YQ   97 (278)
T ss_dssp             GG
T ss_pred             HH
Confidence            43

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=97.48  E-value=0.00012  Score=59.43  Aligned_cols=60  Identities=17%  Similarity=0.213  Sum_probs=46.8

Q ss_pred             cCCCCCEEEEEcCCCchhHhhcc--CCeEEEEeCCC---------------CCceEEEecCCCC----CCCCCceeeEee
Q psy10644        115 ESKGRLVIADLGCGEAKLAAELT--QHKVHSLDLVA---------------LNERVTSCDMTRT----PLKPYSVDVAVF  173 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l~--~~~v~giDls~---------------~~~~~~~~d~~~l----p~~~~sfD~Vi~  173 (196)
                      ...++.+|||+-||.|.++..|.  ..+|+|+|.++               .|+.++.++.+..    +.....+|+|+.
T Consensus       209 ~~~~~~~vlDLycG~G~fsl~La~~~~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~~~~~d~vil  288 (358)
T d1uwva2         209 DVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLL  288 (358)
T ss_dssp             TCCTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEE
T ss_pred             ccCCCceEEEecccccccchhccccccEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhhhhhccCceEEe
Confidence            44457899999999999999993  45999999998               5788999887652    223467899875


Q ss_pred             c
Q psy10644        174 C  174 (196)
Q Consensus       174 ~  174 (196)
                      -
T Consensus       289 D  289 (358)
T d1uwva2         289 D  289 (358)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=97.47  E-value=4e-05  Score=60.00  Aligned_cols=56  Identities=16%  Similarity=0.245  Sum_probs=43.3

Q ss_pred             HHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC-------------CCceEEEecCCCCCC
Q psy10644        105 DIIIKSIQERESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA-------------LNERVTSCDMTRTPL  163 (196)
Q Consensus       105 ~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~-------------~~~~~~~~d~~~lp~  163 (196)
                      +.+++.+   ...++..|||||||+|.++..|  .+.+|+++|+++             .++.++.+|+..+.+
T Consensus        11 ~~Iv~~~---~~~~~d~vlEIGpG~G~LT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~~~~ii~~D~l~~~~   81 (252)
T d1qyra_          11 DSIVSAI---NPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNF   81 (252)
T ss_dssp             HHHHHHH---CCCTTCCEEEECCTTTTTHHHHHTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCH
T ss_pred             HHHHHhc---CCCCCCEEEEECCCchHHHHHHHccCCceEEEEeccchhHHHHHHhhhccchhHHhhhhhhhcc
Confidence            3444444   4455789999999999999999  456999999998             467888888876654

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.45  E-value=0.00015  Score=57.91  Aligned_cols=78  Identities=12%  Similarity=0.026  Sum_probs=58.0

Q ss_pred             CCEEEEEcCCCchhHhhcc----CCeEEEEeCCC-------------------CCceEEEecCCC-CCCCCCceeeEeec
Q psy10644        119 RLVIADLGCGEAKLAAELT----QHKVHSLDLVA-------------------LNERVTSCDMTR-TPLKPYSVDVAVFC  174 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l~----~~~v~giDls~-------------------~~~~~~~~d~~~-lp~~~~sfD~Vi~~  174 (196)
                      ..+||-||.|.|..++.+.    ..+|+.+|+++                   ++++++.+|... +.-.++.||+|++-
T Consensus        90 pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~D  169 (295)
T d1inla_          90 PKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIIID  169 (295)
T ss_dssp             CCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEEE
T ss_pred             CceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEEEc
Confidence            5699999999999998882    34899999998                   467888888643 33345789999975


Q ss_pred             cccc--cc----CHHHHHHHHHHhccCC
Q psy10644        175 LSLM--GT----DLAACIKEANRILKLG  196 (196)
Q Consensus       175 ~~lh--~~----d~~~~l~e~~rvLkpg  196 (196)
                      ..-.  ..    --.++++.+++.|+||
T Consensus       170 ~~dp~~~~~~~L~t~efy~~~~~~L~~~  197 (295)
T d1inla_         170 STDPTAGQGGHLFTEEFYQACYDALKED  197 (295)
T ss_dssp             C----------CCSHHHHHHHHHHEEEE
T ss_pred             CCCCCcCchhhhccHHHHHHHHhhcCCC
Confidence            4321  11    3478999999999985

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=97.36  E-value=0.00021  Score=56.41  Aligned_cols=78  Identities=15%  Similarity=0.063  Sum_probs=59.4

Q ss_pred             CCEEEEEcCCCchhHhhcc----CCeEEEEeCCC-------------------CCceEEEecCCC-CCCCCCceeeEeec
Q psy10644        119 RLVIADLGCGEAKLAAELT----QHKVHSLDLVA-------------------LNERVTSCDMTR-TPLKPYSVDVAVFC  174 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l~----~~~v~giDls~-------------------~~~~~~~~d~~~-lp~~~~sfD~Vi~~  174 (196)
                      ..+||-||-|.|..++.+.    ..+|+.+|+++                   +++.++.+|... +.-.+++||+|+.-
T Consensus        76 p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi~D  155 (274)
T d1iy9a_          76 PEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMVD  155 (274)
T ss_dssp             CCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEES
T ss_pred             cceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEEEc
Confidence            5699999999999998882    24899999998                   477888888744 33346789999875


Q ss_pred             ccc-cc----cCHHHHHHHHHHhccCC
Q psy10644        175 LSL-MG----TDLAACIKEANRILKLG  196 (196)
Q Consensus       175 ~~l-h~----~d~~~~l~e~~rvLkpg  196 (196)
                      ..- ..    .--.++++.+.++|+||
T Consensus       156 ~~~p~~~~~~L~t~eFy~~~~~~L~~~  182 (274)
T d1iy9a_         156 STEPVGPAVNLFTKGFYAGIAKALKED  182 (274)
T ss_dssp             CSSCCSCCCCCSTTHHHHHHHHHEEEE
T ss_pred             CCCCCCcchhhccHHHHHHHHhhcCCC
Confidence            432 11    13568999999999985

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=97.35  E-value=0.00058  Score=52.98  Aligned_cols=89  Identities=16%  Similarity=0.150  Sum_probs=53.0

Q ss_pred             HHHHHHHhhcCCCCCEEEEEcCCCchhHhhcc----CCeEEEEeCC------CC-------Cc-eEEEe-cCCCCCCCCC
Q psy10644        106 IIIKSIQERESKGRLVIADLGCGEAKLAAELT----QHKVHSLDLV------AL-------NE-RVTSC-DMTRTPLKPY  166 (196)
Q Consensus       106 ~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l~----~~~v~giDls------~~-------~~-~~~~~-d~~~lp~~~~  166 (196)
                      .+++...+....+..+|+|||||.|.|++.+.    ...|.|+|+-      |.       ++ .+... |+.  -++++
T Consensus        54 Kl~~~~~~~~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P~~~~~~~~ni~~~~~~~dv~--~l~~~  131 (257)
T d2p41a1          54 KLRWFVERNLVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVF--FIPPE  131 (257)
T ss_dssp             HHHHHHHTTSSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTT--TSCCC
T ss_pred             HHHHHHHhcCccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCCccccccccccccchhhhhHH--hcCCC
Confidence            33333344344567899999999999999882    1367777763      21       11 11111 122  34567


Q ss_pred             ceeeEeeccccccc----CH---HHHHHHHHHhccCC
Q psy10644        167 SVDVAVFCLSLMGT----DL---AACIKEANRILKLG  196 (196)
Q Consensus       167 sfD~Vi~~~~lh~~----d~---~~~l~e~~rvLkpg  196 (196)
                      .+|+|+|-.+-+..    +.   ..+|.-+.++|+||
T Consensus       132 ~~D~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~g  168 (257)
T d2p41a1         132 RCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNN  168 (257)
T ss_dssp             CCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTT
T ss_pred             cCCEEEeeCCCCCCCchhhhhhHHHHHHHHHHHcccC
Confidence            89999987654311    22   24566666788876

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.34  E-value=0.00022  Score=52.95  Aligned_cols=90  Identities=20%  Similarity=0.162  Sum_probs=63.5

Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC-----------CCceEEEecCCCCC-----CCC
Q psy10644        104 VDIIIKSIQERESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA-----------LNERVTSCDMTRTP-----LKP  165 (196)
Q Consensus       104 ~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~-----------~~~~~~~~d~~~lp-----~~~  165 (196)
                      ++.+++.|   .+.++..++|..||.|..+..+  .+.+|+|+|..+           .++.++..+..++.     +..
T Consensus         7 l~Evl~~l---~~~~g~~~vD~T~G~GGhs~~iL~~~~~viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~~~~   83 (182)
T d1wg8a2           7 YQEALDLL---AVRPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALGV   83 (182)
T ss_dssp             HHHHHHHH---TCCTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTTC
T ss_pred             HHHHHHhc---CCCCCCEEEEeCCCCcHHHHHHhcccCcEEEEhhhhhHHHHHhhccccceeEeehHHHHHHHHHHHcCC
Confidence            45566665   4566899999999999998888  567999999998           46677777654432     345


Q ss_pred             CceeeEeecccc--ccc-C-------HHHHHHHHHHhccCC
Q psy10644        166 YSVDVAVFCLSL--MGT-D-------LAACIKEANRILKLG  196 (196)
Q Consensus       166 ~sfD~Vi~~~~l--h~~-d-------~~~~l~e~~rvLkpg  196 (196)
                      +.+|.|++-+.+  +.. +       ....|..+..+|+||
T Consensus        84 ~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~g  124 (182)
T d1wg8a2          84 ERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPG  124 (182)
T ss_dssp             SCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEE
T ss_pred             CccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCC
Confidence            789999987766  221 2       334566666677664

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.33  E-value=0.00014  Score=58.50  Aligned_cols=78  Identities=15%  Similarity=0.044  Sum_probs=54.9

Q ss_pred             CCEEEEEcCCCchhHhhccC----CeEEEEeCCC-------------------CCceEEEecCCC-CCCCCCceeeEeec
Q psy10644        119 RLVIADLGCGEAKLAAELTQ----HKVHSLDLVA-------------------LNERVTSCDMTR-TPLKPYSVDVAVFC  174 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l~~----~~v~giDls~-------------------~~~~~~~~d~~~-lp~~~~sfD~Vi~~  174 (196)
                      ..+||-||-|.|..++.+..    .+|+.+|+++                   ++++++.+|... +.-..+.||+|+.-
T Consensus       107 pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII~D  186 (312)
T d2b2ca1         107 PKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIITD  186 (312)
T ss_dssp             CCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEEC
T ss_pred             CCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEEEc
Confidence            56899999999999998822    4899999998                   466777777643 22346789999975


Q ss_pred             ccc-ccc----CHHHHHHHHHHhccCC
Q psy10644        175 LSL-MGT----DLAACIKEANRILKLG  196 (196)
Q Consensus       175 ~~l-h~~----d~~~~l~e~~rvLkpg  196 (196)
                      ..- ...    --..+++.++++|+||
T Consensus       187 ~~dp~~~~~~L~t~eFy~~~~~~L~~~  213 (312)
T d2b2ca1         187 SSDPVGPAESLFGQSYYELLRDALKED  213 (312)
T ss_dssp             CC-------------HHHHHHHHEEEE
T ss_pred             CCCCCCcchhhhhHHHHHHHHhhcCCC
Confidence            433 211    3467899999999985

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=0.00021  Score=56.67  Aligned_cols=78  Identities=15%  Similarity=0.062  Sum_probs=57.3

Q ss_pred             CCEEEEEcCCCchhHhhcc----CCeEEEEeCCC-------------------CCceEEEecCCC-CCCCCCceeeEeec
Q psy10644        119 RLVIADLGCGEAKLAAELT----QHKVHSLDLVA-------------------LNERVTSCDMTR-TPLKPYSVDVAVFC  174 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l~----~~~v~giDls~-------------------~~~~~~~~d~~~-lp~~~~sfD~Vi~~  174 (196)
                      ..+||-||-|.|..++.+.    ..+|+.+|+++                   ++++++.+|... +.-..++||+|++-
T Consensus        79 pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi~D  158 (285)
T d2o07a1          79 PRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIITD  158 (285)
T ss_dssp             CCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEEE
T ss_pred             cCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEEEc
Confidence            5689999999999999883    34999999997                   578888888643 33345789999975


Q ss_pred             ccc-ccc----CHHHHHHHHHHhccCC
Q psy10644        175 LSL-MGT----DLAACIKEANRILKLG  196 (196)
Q Consensus       175 ~~l-h~~----d~~~~l~e~~rvLkpg  196 (196)
                      ..- ...    --.++++.+.+.|+||
T Consensus       159 ~~~p~~~~~~L~t~eF~~~~~~~L~~~  185 (285)
T d2o07a1         159 SSDPMGPAESLFKESYYQLMKTALKED  185 (285)
T ss_dssp             CC-----------CHHHHHHHHHEEEE
T ss_pred             CCCCCCcccccccHHHHHHHHHhcCCC
Confidence            432 111    3457899999999985

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=97.28  E-value=0.00014  Score=56.33  Aligned_cols=75  Identities=15%  Similarity=0.053  Sum_probs=52.4

Q ss_pred             CCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC---------------CCceEEEecCCCCCC---CCCceeeEeecc
Q psy10644        118 GRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA---------------LNERVTSCDMTRTPL---KPYSVDVAVFCL  175 (196)
Q Consensus       118 ~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~---------------~~~~~~~~d~~~lp~---~~~sfD~Vi~~~  175 (196)
                      ...+|+|||+|.|.-+..+    +..+|+-+|.+.               .++.++...++.+..   ..+.||+|++..
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~sRA  149 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARA  149 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEEC
T ss_pred             CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEEhh
Confidence            3568999999999765555    677999999988               477777777765532   246899999875


Q ss_pred             cccccCHHHHHHHHHHhccC
Q psy10644        176 SLMGTDLAACIKEANRILKL  195 (196)
Q Consensus       176 ~lh~~d~~~~l~e~~rvLkp  195 (196)
                      +-   ....++.-+...|++
T Consensus       150 va---~l~~ll~~~~~~l~~  166 (239)
T d1xdza_         150 VA---RLSVLSELCLPLVKK  166 (239)
T ss_dssp             CS---CHHHHHHHHGGGEEE
T ss_pred             hh---CHHHHHHHHhhhccc
Confidence            42   334455555555544

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=97.22  E-value=0.00043  Score=51.11  Aligned_cols=77  Identities=21%  Similarity=0.079  Sum_probs=49.0

Q ss_pred             CCEEEEEcCCCchhHhhc--cCC-eEEEEeCCC---------------C--CceEEEecCC---CCCCCCCceeeEeecc
Q psy10644        119 RLVIADLGCGEAKLAAEL--TQH-KVHSLDLVA---------------L--NERVTSCDMT---RTPLKPYSVDVAVFCL  175 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l--~~~-~v~giDls~---------------~--~~~~~~~d~~---~lp~~~~sfD~Vi~~~  175 (196)
                      +.+|||+-||+|.++...  .|+ .|+.+|.+.               .  ...+...|+.   ........||+|++--
T Consensus        44 ~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFlDP  123 (183)
T d2ifta1          44 QSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLDP  123 (183)
T ss_dssp             TCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEECC
T ss_pred             cceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEech
Confidence            679999999999998877  344 999999998               1  2233444432   2233355799998755


Q ss_pred             cccccCHHHHHHHHHH--hccC
Q psy10644        176 SLMGTDLAACIKEANR--ILKL  195 (196)
Q Consensus       176 ~lh~~d~~~~l~e~~r--vLkp  195 (196)
                      -.........+..+..  +|++
T Consensus       124 PY~~~~~~~~l~~l~~~~~L~~  145 (183)
T d2ifta1         124 PFHFNLAEQAISLLCENNWLKP  145 (183)
T ss_dssp             CSSSCHHHHHHHHHHHTTCEEE
T ss_pred             hHhhhhHHHHHHHHHHhCCcCC
Confidence            4433334555555543  4554

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.18  E-value=0.0005  Score=54.59  Aligned_cols=78  Identities=14%  Similarity=0.118  Sum_probs=58.4

Q ss_pred             CCEEEEEcCCCchhHhhcc---C-CeEEEEeCCC-------------------CCceEEEecCCC-C-CCCCCceeeEee
Q psy10644        119 RLVIADLGCGEAKLAAELT---Q-HKVHSLDLVA-------------------LNERVTSCDMTR-T-PLKPYSVDVAVF  173 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l~---~-~~v~giDls~-------------------~~~~~~~~d~~~-l-p~~~~sfD~Vi~  173 (196)
                      ..+||=||-|.|..++.+.   + .+|+.+|+++                   ++++++.+|... + ..+++.||+|+.
T Consensus        81 pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvIi~  160 (290)
T d1xj5a_          81 PKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVIV  160 (290)
T ss_dssp             CCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEEE
T ss_pred             CcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEEEE
Confidence            5689999999999999882   2 4899999998                   567888888643 2 234578999986


Q ss_pred             cccc-cc----cCHHHHHHHHHHhccCC
Q psy10644        174 CLSL-MG----TDLAACIKEANRILKLG  196 (196)
Q Consensus       174 ~~~l-h~----~d~~~~l~e~~rvLkpg  196 (196)
                      -..= ..    .--..+++.++++|+||
T Consensus       161 D~~dp~~~~~~L~t~eF~~~~~~~L~~~  188 (290)
T d1xj5a_         161 DSSDPIGPAKELFEKPFFQSVARALRPG  188 (290)
T ss_dssp             CCCCTTSGGGGGGSHHHHHHHHHHEEEE
T ss_pred             cCCCCCCcchhhCCHHHHHHHHHhcCCC
Confidence            4332 11    13477999999999985

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=95.54  E-value=0.0078  Score=49.64  Aligned_cols=81  Identities=15%  Similarity=0.163  Sum_probs=55.0

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc----c-------------CCeEEEEeCCC-----------------CCceEEEecCCC
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL----T-------------QHKVHSLDLVA-----------------LNERVTSCDMTR  160 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l----~-------------~~~v~giDls~-----------------~~~~~~~~d~~~  160 (196)
                      .+..+.+|+|-.||+|.+...+    .             ...++|+|+++                 ....+...|...
T Consensus       159 ~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~~i~~~d~l~  238 (425)
T d2okca1         159 NPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLE  238 (425)
T ss_dssp             CCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTT
T ss_pred             cCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccceeecCchhh
Confidence            4455789999999999996544    1             23599999998                 134455666543


Q ss_pred             CCCCCCceeeEeeccccc--cc----------------CHHHHHHHHHHhccCC
Q psy10644        161 TPLKPYSVDVAVFCLSLM--GT----------------DLAACIKEANRILKLG  196 (196)
Q Consensus       161 lp~~~~sfD~Vi~~~~lh--~~----------------d~~~~l~e~~rvLkpg  196 (196)
                      . .+...||+|++.--+.  ..                ....++..+.+.||+|
T Consensus       239 ~-~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~  291 (425)
T d2okca1         239 K-EPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTG  291 (425)
T ss_dssp             S-CCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEE
T ss_pred             h-hcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCC
Confidence            2 3457899999875441  10                1245888999999875

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.30  E-value=0.017  Score=45.35  Aligned_cols=59  Identities=15%  Similarity=0.121  Sum_probs=43.5

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC---------------CCceEEEecCCCCCCC---CCceeeE
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA---------------LNERVTSCDMTRTPLK---PYSVDVA  171 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~---------------~~~~~~~~d~~~lp~~---~~sfD~V  171 (196)
                      .+.++.+|||+.||.|.=+..+     ....|+++|+++               .++.+...|...+...   .+.||.|
T Consensus        91 ~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~fD~V  170 (293)
T d2b9ea1          91 DPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYI  170 (293)
T ss_dssp             CCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEE
T ss_pred             CCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcccccccceeeEE
Confidence            4456889999999999755544     356899999998               4677777777655432   2579999


Q ss_pred             ee
Q psy10644        172 VF  173 (196)
Q Consensus       172 i~  173 (196)
                      ++
T Consensus       171 L~  172 (293)
T d2b9ea1         171 LL  172 (293)
T ss_dssp             EE
T ss_pred             ee
Confidence            85

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.87  E-value=0.012  Score=46.96  Aligned_cols=56  Identities=14%  Similarity=0.083  Sum_probs=39.9

Q ss_pred             HHHHHHHHHhh---cCCCCCEEEEEcCCCchhHhhc--c--CCeEEEEeCCC------------CCceEEEecCC
Q psy10644        104 VDIIIKSIQER---ESKGRLVIADLGCGEAKLAAEL--T--QHKVHSLDLVA------------LNERVTSCDMT  159 (196)
Q Consensus       104 ~~~~~~~l~~~---~~~~~~~ILDlGCG~G~~a~~l--~--~~~v~giDls~------------~~~~~~~~d~~  159 (196)
                      .+.+++.+.-.   ...++..|||||+|.|.++..|  .  ..+|+++++++            .++.++.+|+.
T Consensus        26 ~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~~~~~~ii~~D~l  100 (322)
T d1i4wa_          26 YNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPY  100 (322)
T ss_dssp             HHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTT
T ss_pred             HHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccCCCcEEEeCchh
Confidence            44555554211   1124678999999999999998  2  34899999987            46778877764

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=94.08  E-value=0.0096  Score=50.51  Aligned_cols=82  Identities=13%  Similarity=0.131  Sum_probs=50.4

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc----c------------------CCeEEEEeCCCC------------C--------ce
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL----T------------------QHKVHSLDLVAL------------N--------ER  152 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l----~------------------~~~v~giDls~~------------~--------~~  152 (196)
                      .+.++.+|+|-.||+|.+....    .                  ...++|+|+++.            .        ..
T Consensus       161 ~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~~~i~~~~~  240 (524)
T d2ar0a1         161 KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGA  240 (524)
T ss_dssp             CCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBS
T ss_pred             cCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhcccccccccch
Confidence            4455789999999999986443    1                  126899999881            1        11


Q ss_pred             EEEecCCCC-CCCCCceeeEeeccccc--c------------cC-HHHHHHHHHHhccCC
Q psy10644        153 VTSCDMTRT-PLKPYSVDVAVFCLSLM--G------------TD-LAACIKEANRILKLG  196 (196)
Q Consensus       153 ~~~~d~~~l-p~~~~sfD~Vi~~~~lh--~------------~d-~~~~l~e~~rvLkpg  196 (196)
                      +...+.... ......||+|+++--+-  .            .+ ...++..+.+.||+|
T Consensus       241 ~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~g  300 (524)
T d2ar0a1         241 IRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPG  300 (524)
T ss_dssp             EEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEE
T ss_pred             hhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhcccc
Confidence            222222111 12345799999875441  0            11 335899999999875

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=94.03  E-value=0.028  Score=44.43  Aligned_cols=59  Identities=14%  Similarity=0.131  Sum_probs=43.5

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC---------------CCceEEEecCCCCCCCCCceeeEee
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDVAVF  173 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~  173 (196)
                      .+.++.+|||+.||.|.=+..+     ....|+++|.++               .++.+...|...++..+..||.|++
T Consensus       113 ~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~ILv  191 (313)
T d1ixka_         113 DPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILL  191 (313)
T ss_dssp             CCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEE
T ss_pred             cCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccccccccccEEEE
Confidence            4556899999999999644433     345899999998               3555555666566666788999975

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=93.67  E-value=0.17  Score=35.45  Aligned_cols=84  Identities=12%  Similarity=0.075  Sum_probs=49.2

Q ss_pred             HHHHHhhcCCCCCEEEEEcCC-CchhHhhc---cCCeEEEEeCCCC--------Cc-eEEEecCCCCC----------CC
Q psy10644        108 IKSIQERESKGRLVIADLGCG-EAKLAAEL---TQHKVHSLDLVAL--------NE-RVTSCDMTRTP----------LK  164 (196)
Q Consensus       108 ~~~l~~~~~~~~~~ILDlGCG-~G~~a~~l---~~~~v~giDls~~--------~~-~~~~~d~~~lp----------~~  164 (196)
                      +..+.....+++.+||=+||| .|.++..+   .+++|+++|.++.        .. ..+..+.....          ..
T Consensus        16 ~~a~~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~   95 (170)
T d1e3ja2          16 VHACRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAI   95 (170)
T ss_dssp             HHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHS
T ss_pred             HHHHHHhCCCCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhccc
Confidence            333444455668899999998 34443333   5789999999982        11 12222211111          01


Q ss_pred             CCceeeEeecccccccCHHHHHHHHHHhccCC
Q psy10644        165 PYSVDVAVFCLSLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       165 ~~sfD~Vi~~~~lh~~d~~~~l~e~~rvLkpg  196 (196)
                      .+.+|+|+-+-.     -...+..+.++|+|+
T Consensus        96 g~g~D~vid~~g-----~~~~~~~a~~~~~~~  122 (170)
T d1e3ja2          96 GDLPNVTIDCSG-----NEKCITIGINITRTG  122 (170)
T ss_dssp             SSCCSEEEECSC-----CHHHHHHHHHHSCTT
T ss_pred             ccCCceeeecCC-----ChHHHHHHHHHHhcC
Confidence            345788876543     246677788888875

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=93.47  E-value=0.016  Score=44.62  Aligned_cols=59  Identities=12%  Similarity=-0.037  Sum_probs=46.1

Q ss_pred             CCEEEEEcCCCchhHhhc--cCCeEEEEeCCC------------------------CCceEEEecCCC-CCCCCCceeeE
Q psy10644        119 RLVIADLGCGEAKLAAEL--TQHKVHSLDLVA------------------------LNERVTSCDMTR-TPLKPYSVDVA  171 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l--~~~~v~giDls~------------------------~~~~~~~~d~~~-lp~~~~sfD~V  171 (196)
                      ..+|||.=||.|..+..+  .+++|++++-++                        .++.++.+|..+ +.-..+.||+|
T Consensus        89 ~~~VlD~TaGlG~Da~vlA~~G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~DvI  168 (250)
T d2oyra1          89 LPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVV  168 (250)
T ss_dssp             CCCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSEE
T ss_pred             CCEEEECCCcccHHHHHHHhCCCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCCCEE
Confidence            458999999999998888  689999999998                        156788888533 33335679999


Q ss_pred             eecccc
Q psy10644        172 VFCLSL  177 (196)
Q Consensus       172 i~~~~l  177 (196)
                      ++--.+
T Consensus       169 YlDPMF  174 (250)
T d2oyra1         169 YLDPMF  174 (250)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            876555

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=93.31  E-value=0.04  Score=44.52  Aligned_cols=62  Identities=23%  Similarity=0.163  Sum_probs=41.4

Q ss_pred             CCEEEEEcCCCchhHhhc--------------------cCCeEEEEeCCC-----------------CCceE--EEecCC
Q psy10644        119 RLVIADLGCGEAKLAAEL--------------------TQHKVHSLDLVA-----------------LNERV--TSCDMT  159 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l--------------------~~~~v~giDls~-----------------~~~~~--~~~d~~  159 (196)
                      ..+|+|+||.+|..+..+                    +..+|.--|+-.                 .++.+  +.+..-
T Consensus        52 ~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY  131 (359)
T d1m6ex_          52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFY  131 (359)
T ss_dssp             EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSS
T ss_pred             ceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCchh
Confidence            467999999999876433                    012566667655                 11111  223333


Q ss_pred             CCCCCCCceeeEeeccccccc
Q psy10644        160 RTPLKPYSVDVAVFCLSLMGT  180 (196)
Q Consensus       160 ~lp~~~~sfD~Vi~~~~lh~~  180 (196)
                      .--||+++.++++++.+|||.
T Consensus       132 ~rLfP~~Slh~~~Ss~alHWL  152 (359)
T d1m6ex_         132 GRLFPRNTLHFIHSSYSLMWL  152 (359)
T ss_dssp             SCCSCTTCBSCEEEESCTTBC
T ss_pred             hhcCCCCceEEeeehhhhhhh
Confidence            445889999999999999975

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=91.83  E-value=0.37  Score=34.81  Aligned_cols=82  Identities=18%  Similarity=0.097  Sum_probs=50.5

Q ss_pred             hcCCCCCEEEEEcCCC-chhHhhc----cCCeEEEEeCCCC--------CceEEEecCCCCCC--------CCCceeeEe
Q psy10644        114 RESKGRLVIADLGCGE-AKLAAEL----TQHKVHSLDLVAL--------NERVTSCDMTRTPL--------KPYSVDVAV  172 (196)
Q Consensus       114 ~~~~~~~~ILDlGCG~-G~~a~~l----~~~~v~giDls~~--------~~~~~~~d~~~lp~--------~~~sfD~Vi  172 (196)
                      ...+++.+||-+|||. |..+..+    ...+|+++|.++.        ....+. +-..-++        ....+|+++
T Consensus        21 a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~-~~~~~~~~~~i~~~t~g~g~D~vi   99 (195)
T d1kola2          21 AGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIAD-LSLDTPLHEQIAALLGEPEVDCAV   99 (195)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEE-TTSSSCHHHHHHHHHSSSCEEEEE
T ss_pred             hCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEEE-eCCCcCHHHHHHHHhCCCCcEEEE
Confidence            3445688999999997 4443333    3348999999982        233222 2111111        244689988


Q ss_pred             ecccc------c----ccCHHHHHHHHHHhccCC
Q psy10644        173 FCLSL------M----GTDLAACIKEANRILKLG  196 (196)
Q Consensus       173 ~~~~l------h----~~d~~~~l~e~~rvLkpg  196 (196)
                      -+-..      |    .......|+.+.++++||
T Consensus       100 d~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~g  133 (195)
T d1kola2         100 DAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVA  133 (195)
T ss_dssp             ECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEE
T ss_pred             ECccccccCCcccceeecCcHHHHHHHHHHHhcC
Confidence            65431      1    124567899999999875

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=91.18  E-value=0.061  Score=43.60  Aligned_cols=30  Identities=10%  Similarity=0.062  Sum_probs=25.2

Q ss_pred             CCEEEEEcCCCchhHhhc----cCCeEEEEeCCC
Q psy10644        119 RLVIADLGCGEAKLAAEL----TQHKVHSLDLVA  148 (196)
Q Consensus       119 ~~~ILDlGCG~G~~a~~l----~~~~v~giDls~  148 (196)
                      +.+|||..||+|..+...    ...+|++.|+++
T Consensus        46 ~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~   79 (375)
T d2dula1          46 PKIVLDALSATGIRGIRFALETPAEEVWLNDISE   79 (375)
T ss_dssp             CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCH
T ss_pred             CCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCH
Confidence            678999999999887754    334899999998

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=90.99  E-value=0.33  Score=37.36  Aligned_cols=34  Identities=15%  Similarity=0.194  Sum_probs=27.2

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA  148 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~  148 (196)
                      .+.++.+|||+.+|.|.=+..+    .+..|+++|+++
T Consensus        99 ~~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~  136 (284)
T d1sqga2          99 APQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDE  136 (284)
T ss_dssp             CCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESST
T ss_pred             CccccceeEeccCccccchhhhhhhhhhhhhhhhhcch
Confidence            4556899999999999655444    456899999999

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=87.33  E-value=0.3  Score=37.18  Aligned_cols=36  Identities=11%  Similarity=0.040  Sum_probs=29.5

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCCCC
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVALN  150 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~~~  150 (196)
                      ...++..|||.=||+|..+...  .+.+.+|+|+++..
T Consensus       247 ~s~~gdiVlDpF~GSGTT~~AA~~lgR~~Ig~El~~~y  284 (320)
T d1booa_         247 LTEPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEY  284 (320)
T ss_dssp             HCCTTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHHH
T ss_pred             cccCCCEEEecCCCCcHHHHHHHHcCCcEEEEeCCHHH
Confidence            3456889999999999886666  78999999999843

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=86.84  E-value=0.55  Score=33.16  Aligned_cols=77  Identities=9%  Similarity=0.119  Sum_probs=44.5

Q ss_pred             cCCCCCEEEEEcCCC-chhHhhc---cCC-eEEEEeCCCC--------C-ceEEEecCCCC-----C-CCCCceeeEeec
Q psy10644        115 ESKGRLVIADLGCGE-AKLAAEL---TQH-KVHSLDLVAL--------N-ERVTSCDMTRT-----P-LKPYSVDVAVFC  174 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~-G~~a~~l---~~~-~v~giDls~~--------~-~~~~~~d~~~l-----p-~~~~sfD~Vi~~  174 (196)
                      ..+++.+||=+|||. |.++..+   .+. +|+++|.++.        . ..++...-+.+     . .....||+|+-+
T Consensus        24 ~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~vid~  103 (174)
T d1jqba2          24 DIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVIMA  103 (174)
T ss_dssp             TCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEEEEEC
T ss_pred             CCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcceEEEc
Confidence            445678888899985 5554444   454 7999999982        1 12221111111     0 123459998776


Q ss_pred             ccccccCHHHHHHHHHHhccCC
Q psy10644        175 LSLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       175 ~~lh~~d~~~~l~e~~rvLkpg  196 (196)
                      -.-     ...+.++.++|||+
T Consensus       104 ~g~-----~~~~~~a~~~~~~~  120 (174)
T d1jqba2         104 GGG-----SETLSQAVKMVKPG  120 (174)
T ss_dssp             SSC-----TTHHHHHHHHEEEE
T ss_pred             cCC-----HHHHHHHHHHHhcC
Confidence            542     34566667777764

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=84.63  E-value=0.39  Score=37.14  Aligned_cols=57  Identities=18%  Similarity=0.279  Sum_probs=42.2

Q ss_pred             CEEEEEcCCCchhHhhc------cCCeEEEEeCCC---------------CCceEEEecCCCCC-----CCCCceeeEee
Q psy10644        120 LVIADLGCGEAKLAAEL------TQHKVHSLDLVA---------------LNERVTSCDMTRTP-----LKPYSVDVAVF  173 (196)
Q Consensus       120 ~~ILDlGCG~G~~a~~l------~~~~v~giDls~---------------~~~~~~~~d~~~lp-----~~~~sfD~Vi~  173 (196)
                      ++||=.| |+|.++..|      .+.+|+++|...               .++.++++|+.+..     +....+|+|+-
T Consensus         1 MKiLItG-~tGfIG~~l~~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~ViH   79 (338)
T d1udca_           1 MRVLVTG-GSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIH   79 (338)
T ss_dssp             CEEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHHHTTCSEEEE
T ss_pred             CEEEEEC-CCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHhhcCCCCEEEEeecCCHHHHHHHHhccCCCEEEE
Confidence            4678788 889887777      578999998522               47889999987643     33456899887


Q ss_pred             cccc
Q psy10644        174 CLSL  177 (196)
Q Consensus       174 ~~~l  177 (196)
                      +.+.
T Consensus        80 lAa~   83 (338)
T d1udca_          80 FAGL   83 (338)
T ss_dssp             CCSC
T ss_pred             CCCc
Confidence            6655

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.40  E-value=0.72  Score=32.17  Aligned_cols=74  Identities=11%  Similarity=0.079  Sum_probs=46.0

Q ss_pred             CCCCCEEEEEcCC--CchhHhhc---cCCeEEEEeCCCC--------CceEEEecCCCCC--------CCCCceeeEeec
Q psy10644        116 SKGRLVIADLGCG--EAKLAAEL---TQHKVHSLDLVAL--------NERVTSCDMTRTP--------LKPYSVDVAVFC  174 (196)
Q Consensus       116 ~~~~~~ILDlGCG--~G~~a~~l---~~~~v~giDls~~--------~~~~~~~d~~~lp--------~~~~sfD~Vi~~  174 (196)
                      .+++.+||-+|++  .|..+..+   .+++|++++.++.        ....+ .|..+..        .....+|+|+.+
T Consensus        26 ~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga~~v-i~~~~~~~~~~i~~~t~~~g~d~v~d~  104 (174)
T d1yb5a2          26 VKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHEV-FNHREVNYIDKIKKYVGEKGIDIIIEM  104 (174)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEE-EETTSTTHHHHHHHHHCTTCEEEEEES
T ss_pred             CCCCCEEEEEeccccccccccccccccCcccccccccccccccccccCcccc-cccccccHHHHhhhhhccCCceEEeec
Confidence            4568899999973  44444444   5789999998772        22211 1222211        234579999887


Q ss_pred             ccccccCHHHHHHHHHHhccCC
Q psy10644        175 LSLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       175 ~~lh~~d~~~~l~e~~rvLkpg  196 (196)
                      ..      ...+.++.++|+|+
T Consensus       105 ~g------~~~~~~~~~~l~~~  120 (174)
T d1yb5a2         105 LA------NVNLSKDLSLLSHG  120 (174)
T ss_dssp             CH------HHHHHHHHHHEEEE
T ss_pred             cc------HHHHHHHHhccCCC
Confidence            54      35677778888764

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=84.40  E-value=1.1  Score=28.54  Aligned_cols=62  Identities=13%  Similarity=0.152  Sum_probs=38.9

Q ss_pred             CCEEEEEcC-CCc--hhHhhc--cCCeEEEEeCCC---------CCceEEEecCCCCCCCCCceeeEeecccccccCHH
Q psy10644        119 RLVIADLGC-GEA--KLAAEL--TQHKVHSLDLVA---------LNERVTSCDMTRTPLKPYSVDVAVFCLSLMGTDLA  183 (196)
Q Consensus       119 ~~~ILDlGC-G~G--~~a~~l--~~~~v~giDls~---------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~~d~~  183 (196)
                      ..+|.=||. |+|  .+|+.|  .++.|+|.|...         .++.+..+.... .+  ...|+||...++-..+++
T Consensus         8 ~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L~~~Gi~v~~g~~~~-~i--~~~d~vV~S~AI~~~npe   83 (96)
T d1p3da1           8 VQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQAGAKIYIGHAEE-HI--EGASVVVVSSAIKDDNPE   83 (96)
T ss_dssp             CCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHHTTCEEEESCCGG-GG--TTCSEEEECTTSCTTCHH
T ss_pred             CCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCChhhhHHHHCCCeEEECCccc-cC--CCCCEEEECCCcCCCCHH
Confidence            446666653 444  556666  789999999876         456665544422 12  246899888887433433

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.08  E-value=2.2  Score=29.36  Aligned_cols=81  Identities=15%  Similarity=0.104  Sum_probs=46.0

Q ss_pred             HHhhcCCCCCEEEEEcCCCchh-Hhhc---cCC-eEEEEeCCCC--------CceEEEecCCCCC---------CCCCce
Q psy10644        111 IQERESKGRLVIADLGCGEAKL-AAEL---TQH-KVHSLDLVAL--------NERVTSCDMTRTP---------LKPYSV  168 (196)
Q Consensus       111 l~~~~~~~~~~ILDlGCG~G~~-a~~l---~~~-~v~giDls~~--------~~~~~~~d~~~lp---------~~~~sf  168 (196)
                      +.....+++.+||=+|||.-.. +..+   .++ +|+++|.++.        ........-...+         .....+
T Consensus        19 ~~~~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~   98 (171)
T d1pl8a2          19 CRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKP   98 (171)
T ss_dssp             HHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCC
T ss_pred             HHHhCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCc
Confidence            3333455688999999986544 2222   455 8999999982        2222221111111         012467


Q ss_pred             eeEeecccccccCHHHHHHHHHHhccCC
Q psy10644        169 DVAVFCLSLMGTDLAACIKEANRILKLG  196 (196)
Q Consensus       169 D~Vi~~~~lh~~d~~~~l~e~~rvLkpg  196 (196)
                      |+|+-+-.     -...+..+.++|++|
T Consensus        99 Dvvid~~G-----~~~~~~~a~~~~~~g  121 (171)
T d1pl8a2          99 EVTIECTG-----AEASIQAGIYATRSG  121 (171)
T ss_dssp             SEEEECSC-----CHHHHHHHHHHSCTT
T ss_pred             eEEEeccC-----CchhHHHHHHHhcCC
Confidence            88776553     245667777777765

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=83.99  E-value=0.71  Score=34.28  Aligned_cols=45  Identities=16%  Similarity=0.143  Sum_probs=33.0

Q ss_pred             hHHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC
Q psy10644        103 PVDIIIKSIQERESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA  148 (196)
Q Consensus       103 ~~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~  148 (196)
                      |.+.+...|.. ...++..|||.=||+|..+...  .+.+.+|+|+++
T Consensus       193 P~~L~~~~I~~-~s~~gdiVLDpF~GSGTT~~Aa~~lgR~~ig~El~~  239 (279)
T d1eg2a_         193 PAAVIERLVRA-LSHPGSTVLDFFAGSGVTARVAIQEGRNSICTDAAP  239 (279)
T ss_dssp             CHHHHHHHHHH-HSCTTCEEEETTCTTCHHHHHHHHHTCEEEEEESST
T ss_pred             chhHHHHHHHh-hcCCCCEEEecCCCCcHHHHHHHHhCCeEEEEeCCH
Confidence            44444444433 3356889999999999776555  789999999999

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=83.39  E-value=0.38  Score=36.61  Aligned_cols=56  Identities=18%  Similarity=0.152  Sum_probs=40.2

Q ss_pred             EEEEEcCCCchhHhhc------cCCeEEEEe-CCC-------------CCceEEEecCCCCC-----CCCCceeeEeecc
Q psy10644        121 VIADLGCGEAKLAAEL------TQHKVHSLD-LVA-------------LNERVTSCDMTRTP-----LKPYSVDVAVFCL  175 (196)
Q Consensus       121 ~ILDlGCG~G~~a~~l------~~~~v~giD-ls~-------------~~~~~~~~d~~~lp-----~~~~sfD~Vi~~~  175 (196)
                      +||=.| |+|.++..|      .+++|+++| ++.             .++.++.+|+.+..     +....+|+|+.+.
T Consensus         2 KILVTG-atGfIGs~lv~~Ll~~g~~V~~id~~~~~~~~~~~~~~~~~~~~~~i~~Di~~~~~l~~~~~~~~~d~Vih~a   80 (338)
T d1orra_           2 KLLITG-GCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFHLA   80 (338)
T ss_dssp             EEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred             EEEEEC-CCcHHHHHHHHHHHHCcCEEEEEECCCcccchhHHHHhhccCCcEEEEcccCCHHHHHHHHHhcCCceEEeec
Confidence            577666 778887666      578999998 333             47889999997532     2334579998877


Q ss_pred             cc
Q psy10644        176 SL  177 (196)
Q Consensus       176 ~l  177 (196)
                      +.
T Consensus        81 a~   82 (338)
T d1orra_          81 GQ   82 (338)
T ss_dssp             CC
T ss_pred             cc
Confidence            66

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=82.19  E-value=0.95  Score=31.17  Aligned_cols=71  Identities=15%  Similarity=0.216  Sum_probs=42.4

Q ss_pred             CEEEEEcCC--CchhHhhc--cCCeEEEEeCCCC--------C-ceEEEecCCCCCCCCCceeeEeecccccccCHHHHH
Q psy10644        120 LVIADLGCG--EAKLAAEL--TQHKVHSLDLVAL--------N-ERVTSCDMTRTPLKPYSVDVAVFCLSLMGTDLAACI  186 (196)
Q Consensus       120 ~~ILDlGCG--~G~~a~~l--~~~~v~giDls~~--------~-~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~~d~~~~l  186 (196)
                      ++|.=||+|  -+.+++.|  .+++|+++|.++.        + +.....+.+.+    ...|+|+.+--.  ......+
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~~~~~~~~~~~~----~~~DiIilavp~--~~~~~vl   74 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLL----QTAKIIFLCTPI--QLILPTL   74 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGG----TTCSEEEECSCH--HHHHHHH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhhccceeeeecccc----cccccccccCcH--hhhhhhh
Confidence            467778888  34556666  6889999999872        1 11122222221    356888764421  2456677


Q ss_pred             HHHHHhccCC
Q psy10644        187 KEANRILKLG  196 (196)
Q Consensus       187 ~e~~rvLkpg  196 (196)
                      +++...|+++
T Consensus        75 ~~l~~~l~~~   84 (165)
T d2f1ka2          75 EKLIPHLSPT   84 (165)
T ss_dssp             HHHGGGSCTT
T ss_pred             hhhhhhcccc
Confidence            7777777654

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=82.12  E-value=0.79  Score=33.54  Aligned_cols=46  Identities=22%  Similarity=0.179  Sum_probs=32.5

Q ss_pred             hHHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCCC
Q psy10644        103 PVDIIIKSIQERESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVAL  149 (196)
Q Consensus       103 ~~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~~  149 (196)
                      |+..+...|... ..++..|||.=||+|..+...  .+.+.+|+|+++.
T Consensus       198 P~~L~~~lI~~~-s~~gd~VlDpF~GSGTT~~aa~~~~R~~ig~El~~~  245 (256)
T d1g60a_         198 PRDLIERIIRAS-SNPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAE  245 (256)
T ss_dssp             CHHHHHHHHHHH-CCTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHH
T ss_pred             chhHHHHHHHHh-CCCCCEEEECCCCchHHHHHHHHcCCeEEEEeCCHH
Confidence            344333334332 345889999999999876665  7889999999873

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=81.08  E-value=0.73  Score=36.51  Aligned_cols=34  Identities=18%  Similarity=0.382  Sum_probs=25.3

Q ss_pred             cCCCCCEEEEEcCCCchhHhhc-----------cCCeEEEEeCCC
Q psy10644        115 ESKGRLVIADLGCGEAKLAAEL-----------TQHKVHSLDLVA  148 (196)
Q Consensus       115 ~~~~~~~ILDlGCG~G~~a~~l-----------~~~~v~giDls~  148 (196)
                      ...+...|+|+|+|+|.++..+           ....++-++.|+
T Consensus        76 ~~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~  120 (365)
T d1zkda1          76 DEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINP  120 (365)
T ss_dssp             TCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCH
T ss_pred             CCCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccch
Confidence            3334568999999999997766           123688888888

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.73  E-value=1.1  Score=30.96  Aligned_cols=35  Identities=6%  Similarity=0.017  Sum_probs=26.1

Q ss_pred             cCCCCCEEEEEcCC-CchhHhhc---cCCeEEEEeCCCC
Q psy10644        115 ESKGRLVIADLGCG-EAKLAAEL---TQHKVHSLDLVAL  149 (196)
Q Consensus       115 ~~~~~~~ILDlGCG-~G~~a~~l---~~~~v~giDls~~  149 (196)
                      ..+++.+||-+||| .|.++..+   .+++|+++|.++.
T Consensus        24 ~~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~   62 (168)
T d1piwa2          24 GCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSR   62 (168)
T ss_dssp             TCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSST
T ss_pred             CcCCCCEEEEECCCCcchhHHHHhhhccccccccccchh
Confidence            44568899999998 44444444   5889999999983

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=80.43  E-value=1.4  Score=33.19  Aligned_cols=55  Identities=9%  Similarity=0.079  Sum_probs=39.9

Q ss_pred             CEEEEEcCCCchhHhhc--cCCeEE-EEeCCC---------CCceEEEecCCCCCCC-CCceeeEeec
Q psy10644        120 LVIADLGCGEAKLAAEL--TQHKVH-SLDLVA---------LNERVTSCDMTRTPLK-PYSVDVAVFC  174 (196)
Q Consensus       120 ~~ILDlGCG~G~~a~~l--~~~~v~-giDls~---------~~~~~~~~d~~~lp~~-~~sfD~Vi~~  174 (196)
                      ++||||=||.|.+..-|  .|.+++ ++|+.+         ....+..+|+.++... -..+|+++..
T Consensus         1 mk~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~~~~~~~~Di~~~~~~~~~~~dll~~g   68 (324)
T d1dcta_           1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHSAKLIKGDISKISSDEFPKCDGIIGG   68 (324)
T ss_dssp             CEEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHCCSEEEESCTTTSCGGGSCCCSEEEEC
T ss_pred             CeEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCCCCCccCChhhCCHhHcccccEEeec
Confidence            47999999999887766  576555 889998         3456678898876432 2358998864