Psyllid ID: psy10650

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440------
Protein Sequence
MNEKGGEEKEDQEKEVGGISRGKEEETEEEKKKKKKKKKKKKKKKRYEEEEKEEEKDNKLLHNCYLYSYYRVTHICFSDPPGQAPVLLSPGIHSFPFKLGLPLGLPSTFLGQAPVLLSPGIHSFPFKLGLPLGLPSTFLGKHGWVQYFCKAALREPTGYTHKNQQVFIIMSPIDLNLEPPILSVFIIMSPIDLNLEPPILSQPFDCEIEHKLGVACVSSGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALTEQPFDCEIEHKLGVACVSSGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALTETIQYLARNKVLESETRELASLTRGKIKPGERDDWTNQQLYVPPLPPTNLRGCHLIKIQYDVFFIVDPKSIEKPVKLQLPIMLATYPFRQDDGSLQRKSSGTHYPTTLPIFRPWLEEKATKIKT
Secondary Structure (PSIPRED)
cccccccccccccHHccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHcccEEEEEEEEEEEEEEEEEEccccccccEEEcccEEEccEEEEEEccccccccccccEEEcccEEEEEEEEEccccccccEEEccEEEEEEEEEEEEcccccccccEEEEEEEEEcccccccccccEEEEEccccccccccccccccccEEEEEEEEEEcccccEEEEEEEcccccccccEEEEEEEEEEcccEEEEccccccccccccccccEEEEEEEEccccEEEEEEEcccccccccEEEEEEEEEEcccEEEEccccEEEEEEEEEEcccEEcccEEEEEEEEcccccccccccccccEEEcccccccccccccEEEEEEEEEEEEEcccccccEEEEEcEEEEcccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHcEEEEEEEEEEEEEcccccccccEEEccccccccccEEEEEEEcccccccccEEcccccEEEEEEEEcccccccccccccEEEEEEEEEEEEccccccccEEEEEEEEcccccccccccccccccccHHHcccccccccccccccccEEEEEEEcccccEEEEEEEcccccccccEEEEEEEEEcccccEEEEEEEEEEEEEEEEccccEEEEEEEEcccccEEEEccccccccccEEccccccccccccEEEEEEEEEEEEEEEccccccEEcccEEEEEcccccccccccccccccEcccccccccccccccEEEEEEEEEEEEEccccccccEEEEEEEEEEEcccccccccccccccccccccccccccccccccEEEcc
Coil and Loop (DISEMBL)
mnekggeekedqekevggisrgkeeeTEEEKKKKKKKKKKKKKKKRYEEEEKEEEkdnkllhncylySYYRVthicfsdppgqapvllspgihsfpfklglplglpstflgqapvllspgihsfpfklglplglpstflgkhGWVQYFCKAAlreptgythknqQVFIIMspidlnleppilsvfiimspidlnleppilsqpfdceiehklgvacvssgpvlcrvsldrggyvpgetIIINATvynrskitVKSTKaalteqpfdceiehklgvacvssgpvlcrvsldrggyvpgetIIINATvynrskitVKSTKAALTETIQYLARNKVLESETRELASLtrgkikpgerddwtnqqlyvpplpptnlrgchliKIQYDVFfivdpksiekpvklqlpimlatypfrqddgslqrkssgthypttlpifrpWLEEKATKIKT
Flexible Loop (DISEMBL)
mnekggeekedqekevggisrgkeeeteeekkkkkkkkkkkkkkkryeeeekeeekdnkllhnCYLYSYYRVTHICFSDPPGQAPVLLSPGIHSFPFKLGLPLGLPSTFLGQAPVLLSPGIHSFPFKLGLPLGLPSTFLGKHGWVQYFCKAALREPTGYTHKNQQVFIIMSPIDLNLEPPILSVFIIMSPIDLNLEPPILSQPFDCEIEHKLGVACVSSGPVLCRVSLDRGGYVPgetiiinatvynrskITVKSTKAALTEQPFDCEIEHKLGVACVSSGPVLCRVSLDRGGYVPgetiiinatvynrskitvKSTKAALTETIQylarnkvlesetrelasltrgkikpgerddwtnqQLYVPPLPPTNLRGCHLIKIQYDVFFIVDPKSIEKPVKLQLPIMLATYPFRQDDGslqrkssgthypttlpifrpwleekatkikt
Low Complexity Region (SEG)
MNekggeekedqekevggISRGkeeeteeekkkkkkkkkkkkkkkryeeeekeeekDNKLLHNCYLYSYYRVTHICFSDPPGQAPVLLSPGIHSFPFKlglplglpSTFLGQAPVLLSPGIHSFPFKlglplglpSTFLGKHGWVQYFCKAALREPTGYTHKNQQVFIIMSPIDLNLEPPILSVFIIMSPIDLNLEPPILSQPFDCEIEHKLGVACVSSGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALTEQPFDCEIEHKLGVACVSSGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALTETIQYLARNKVLESETRELASLTRGKIKPGERDDWTNQQLYVPPLPPTNLRGCHLIKIQYDVFFIVDPKSIEKPVKLQLPIMLATYPFRQDDGSLQRKSSGTHYPTTLPIFRPWLEEKATKIKT
Disordered region (IsUnstruct)
***********************************************************LLHNCYLYSYYRVTHICFSDPPGQAPVLLSPGIHSFPFKLGLPLGLPSTFLGQAPVLLSPGIHSFPFKLGLPLGLPSTFLGKHGWVQYFCKAALREPTGYTHKNQQVFIIMSPIDLNLEPPILSVFIIMSPIDLNLEPPILSQPFDCEIEHKLGVACVSSGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALTEQPFDCEIEHKLGVACVSSGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALTETIQYLARNKVL*********************DWTNQQLYVPPLPPTNLRGCHLIKIQYDVFFIVDPKSIEKPVKLQLPIMLATYPFR**************YPTTLPIFRPWL*********
Disordered Region (DISOPRED)
**********************************************************KLLHNCYLYSYYRV*********************SFPFKLGLPLGLPSTFLGQAPVLLSPGIHSFPFKLGLPLGLPSTFLGKHGWVQYFCKAALREPTGYTHKNQQVFIIMSPIDLNLEPPILSVFIIMSPIDLNLEPPILSQPFDCEIEHKLGVACVSSGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALTEQPFDCEIEHKLGVACVSSGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALTETIQYLARNKVLESETRELASLT**************QQLYVPPLPPTNLRGCHLIKIQYDVFFIVDPKSIEKPVKLQLPIMLATYP*************************************
Disordered Region (DISEMBL)
*********************************************************NKLLHNCYLYSYYRVTHICFSDPPGQAPVLLSPGIHSFPFKLGLPLGLPSTFLGQAPVLLSPGIHSFPFKLGLPLGLPSTFLGKHGWVQYFCKAALREPTGYTHKNQQVFIIMSPIDLNLEPPILSVFIIMSPIDLNLEPPILSQPFDCEIEHKLGVACVSSGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALTEQPFDCEIEHKLGVACVSSGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALTETIQYLARNKVLESETRELASLTRGKIKPGERDDWTNQQLYVPPLPPTNLRGCHLIKIQYDVFFIVDPKSIEKPVKLQLPIMLATYPFRQDDGSLQRKSSGTHYPTTLPIFRPWLEEKATKIKT
Disordered Region (DISPRO)
*****************************EKKKKKKKKKKKKKKKRYEEEEKEEEKDNKLLHNCYLYSYYRVTHICFSDPPGQAPVLLSPGIHSFPFKLGLPLGLPSTFLGQAPVLLSPGIHSFPFKLGLPLGLPSTFLGKHGWVQYFCKAALREPTGYTHKNQQVFIIMSPIDLNLEPPILSVFIIMSPIDLNLEPPILSQPFDCEIEHKLGVACVSSGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALTEQPFDCEIEHKLGVACVSSGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALTETIQYLARNKVLESETRELASLTRGKIKPGERDDWTNQQLYVPPLPPTNLRGCHLIKIQYDVFFIVDPKSIEKPVKLQLPIMLATYPFRQD***************TLPIFRPWLEEKA*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNEKGGEEKEDQEKEVGGISRGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLHNCYLYSYYRVTHICFSDPPGQAPVLLSPGIHSFPFKLGLPLGLPSTFLGQAPVLLSPGIHSFPFKLGLPLGLPSTFLGKHGWVQYFCKAALREPTGYTHKNQQVFIIMSPIDLNLEPPILSVFIIMSPIDLNLEPPILSQPFDCEIEHKLGVACVSSGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALTEQPFDCEIEHKLGVACVSSGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALTETIQYLARNKVLESETRELASLTRGKIKPGERDDWTNQQLYVPPLPPTNLRGCHLIKIQYDVFFIVDPKSIEKPVKLQLPIMLATYPFRQDDGSLQRKSSGTHYPTTLPIFRPWLEEKATKIKT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	446	2.2.26 [Sep-21-2011]
Q8NCT1	418	Arrestin domain-containin	yes	N/A	0.5	0.533	0.242	8e-11
Q9D668	407	Arrestin domain-containin	no	N/A	0.322	0.353	0.310	2e-10
Q5R5L7	414	Arrestin domain-containin	no	N/A	0.302	0.326	0.314	2e-10
Q7TPQ9	414	Arrestin domain-containin	no	N/A	0.302	0.326	0.314	3e-10
Q96B67	414	Arrestin domain-containin	no	N/A	0.302	0.326	0.314	3e-10
Q6TXF1	414	Arrestin domain-containin	yes	N/A	0.302	0.326	0.314	3e-10
Q0VCA2	414	Arrestin domain-containin	no	N/A	0.282	0.304	0.320	3e-10
Q8TBH0	407	Arrestin domain-containin	no	N/A	0.322	0.353	0.304	2e-09
Q7TP90	300	Arrestin domain-containin	no	N/A	0.311	0.463	0.337	5e-09
Q8N5I2	433	Arrestin domain-containin	no	N/A	0.298	0.307	0.311	2e-08

>sp|Q8NCT1|ARRD4_HUMAN Arrestin domain-containing protein 4 OS=Homo sapiens GN=ARRDC4 PE=2 SV=3

 Score = 68.9 bits (167), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 117/314 (37%), Gaps = 91/314 (28%)

Query: 111 GQAPVLLSPGIHSFPFKLGLPLG-LPSTFLGKHGWVQYFCKAALREPTGYTHKNQQVFII 169
           G+  +LL PG H FPF+  LP   L ++F GK+G +QY  +A L  P       ++   +
Sbjct: 103 GEGIILLQPGKHEFPFRFQLPSEPLVTSFTGKYGSIQYCVRAVLERPKVPDQSVKRELQV 162

Query: 170 MSPIDLNLEPPILSVFIIMSPIDLNLEPPILSQPFDCEIEHKLGVACVSSGPVLCRVSLD 229
           +S +D+N                     P L  P     E  +G    +SGPV     ++
Sbjct: 163 VSHVDVNT--------------------PALLTPVLKTQEKMVGCWFFTSGPVSLSAKIE 202

Query: 230 RGGYVPGETIIINATVYNRSKITVKSTKAALTEQPFDCEIEHKLGVACVSSGPVLCRVSL 289
           R GY  GE I I A + N S   +                                    
Sbjct: 203 RKGYCNGEAIPIYAEIENCSSRLI------------------------------------ 226

Query: 290 DRGGYVPGETIIINATVYNRSKITVKSTKAALTETIQYLARNKVLESETRELASLTRGK- 348
                VP   I    T     K          T+TI+++  N              RG  
Sbjct: 227 -----VPKAAIFQTQTYLASGK----------TKTIRHMVAN-------------VRGNH 258

Query: 349 IKPGERDDWTNQQLYVPPLPPTNLRGCHLIKIQYDVFFIVDPKSIEKPVKLQLPIMLATY 408
           I  G  D W  + L +PP+ P+ L  C +I++ Y +   +     +K + L+LP+++ T 
Sbjct: 259 IASGSTDTWNGKTLKIPPVTPSILDCC-IIRVDYSLAVYIHIPGAKK-LMLELPLVIGTI 316

Query: 409 PFRQDDGSLQRKSS 422
           P+   +G   R SS
Sbjct: 317 PY---NGFGSRNSS 327

Homo sapiens (taxid: 9606)

>sp|Q9D668|ARRD2_MOUSE Arrestin domain-containing protein 2 OS=Mus musculus GN=Arrdc2 PE=2 SV=1

 Score = 67.8 bits (164), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 68/164 (41%), Gaps = 20/164 (12%)

Query: 117 LSPGIHSFPFKLGLPLGLPSTFLGKHGWVQYFCKAALREPTGYTHKNQQVFIIMSPIDLN 176
           L  G H FPF   LP+ L ++F GKHG V+Y  KA L  P       ++VF ++ P+D+N
Sbjct: 99  LPAGRHEFPFSFQLPISLVTSFEGKHGSVRYSIKATLHRPWVPARCARKVFTVIEPVDIN 158

Query: 177 LEPPILSVFIIMSPIDLNLEPPILSQPFDCEIEHKLGVACVSSGPVLCRVSLDRGGYVPG 236
                                P L +P     E        + G V     +DR GY PG
Sbjct: 159 T--------------------PALLEPQAGAREKVARSWYCTRGLVSLSAKIDRKGYTPG 198

Query: 237 ETIIINATVYNRSKITVKSTKAALTEQPFDCEIEHKLGVACVSS 280
           E I I A + N S   V+   A +  Q F      K   A V+S
Sbjct: 199 EVIPIFAEIDNGSTRAVQPRAALVQTQTFMARGARKQKRAVVAS 242

Mus musculus (taxid: 10090)

>sp|Q5R5L7|ARRD3_PONAB Arrestin domain-containing protein 3 OS=Pongo abelii GN=ARRDC3 PE=2 SV=1

 Score = 67.4 bits (163), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 79/143 (55%), Gaps = 8/143 (5%)

Query: 270 EHKLGVACVSSGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALTETIQYLA 329
           E  L     +SGP+     ++R GY PGE+I I A + N S   V   KAA+ +T  + A
Sbjct: 178 EKTLCCWFCTSGPISLSAKIERKGYTPGESIQIYAEIENCSSRMV-VPKAAIYQTQAFYA 236

Query: 330 RNKVLESETRELASLTRGK-IKPGERDDWTNQQLYVPPLPPTNLRGCHLIKIQYDVFFIV 388
           + K+   E ++L +  RG+ +  G+ + W  + L +PP+ P+ L  C +I+++Y +   V
Sbjct: 237 KGKM--KEVKQLVANLRGESLSSGKTETWNGKLLKIPPVSPSIL-DCSIIRVEYSLMVYV 293

Query: 389 D-PKSIEKPVKLQLPIMLATYPF 410
           D P +++  + L LP+++ T P 
Sbjct: 294 DIPGAMD--LFLNLPLVIGTIPL 314

Pongo abelii (taxid: 9601)

>sp|Q7TPQ9|ARRD3_MOUSE Arrestin domain-containing protein 3 OS=Mus musculus GN=Arrdc3 PE=2 SV=1

 Score = 67.0 bits (162), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 79/143 (55%), Gaps = 8/143 (5%)

Query: 270 EHKLGVACVSSGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALTETIQYLA 329
           E  L     +SGP+     ++R GY PGE+I I A + N S   V   KAA+ +T  + A
Sbjct: 178 EKTLCCWFCTSGPISLSAKIERKGYTPGESIQIFAEIENCSSRMV-VPKAAIYQTQAFYA 236

Query: 330 RNKVLESETRELASLTRGK-IKPGERDDWTNQQLYVPPLPPTNLRGCHLIKIQYDVFFIV 388
           + K+   E ++L +  RG+ +  G+ + W  + L +PP+ P+ L  C +I+++Y +   V
Sbjct: 237 KGKM--KEVKQLVANLRGESLSSGKTETWNGKLLKIPPVSPSIL-DCSIIRVEYSLMVYV 293

Query: 389 D-PKSIEKPVKLQLPIMLATYPF 410
           D P +++  + L LP+++ T P 
Sbjct: 294 DIPGAMD--LLLSLPLVIGTIPL 314

Mus musculus (taxid: 10090)

>sp|Q96B67|ARRD3_HUMAN Arrestin domain-containing protein 3 OS=Homo sapiens GN=ARRDC3 PE=1 SV=1

 Score = 67.0 bits (162), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 79/143 (55%), Gaps = 8/143 (5%)

Query: 270 EHKLGVACVSSGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALTETIQYLA 329
           E  L     +SGP+     ++R GY PGE+I I A + N S   V   KAA+ +T  + A
Sbjct: 178 EKTLCCWFCTSGPISLSAKIERKGYTPGESIQIFAEIENCSSRMV-VPKAAIYQTQAFYA 236

Query: 330 RNKVLESETRELASLTRGK-IKPGERDDWTNQQLYVPPLPPTNLRGCHLIKIQYDVFFIV 388
           + K+   E ++L +  RG+ +  G+ + W  + L +PP+ P+ L  C +I+++Y +   V
Sbjct: 237 KGKM--KEVKQLVANLRGESLSSGKTETWNGKLLKIPPVSPSIL-DCSIIRVEYSLMVYV 293

Query: 389 D-PKSIEKPVKLQLPIMLATYPF 410
           D P +++  + L LP+++ T P 
Sbjct: 294 DIPGAMD--LFLNLPLVIGTIPL 314

Homo sapiens (taxid: 9606)

>sp|Q6TXF1|ARRD3_RAT Arrestin domain-containing protein 3 OS=Rattus norvegicus GN=Arrdc3 PE=2 SV=1

 Score = 67.0 bits (162), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 79/143 (55%), Gaps = 8/143 (5%)

Query: 270 EHKLGVACVSSGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALTETIQYLA 329
           E  L     +SGP+     ++R GY PGE+I I A + N S   V   KAA+ +T  + A
Sbjct: 178 EKTLCCWFCTSGPISLSAKIERKGYTPGESIQIFAEIENCSSRMV-VPKAAIYQTQAFYA 236

Query: 330 RNKVLESETRELASLTRGK-IKPGERDDWTNQQLYVPPLPPTNLRGCHLIKIQYDVFFIV 388
           + K+   E ++L +  RG+ +  G+ + W  + L +PP+ P+ L  C +I+++Y +   V
Sbjct: 237 KGKM--KEVKQLVANLRGESLSSGKTETWDGKLLKIPPVSPSIL-DCSIIRVEYSLMVYV 293

Query: 389 D-PKSIEKPVKLQLPIMLATYPF 410
           D P +++  + L LP+++ T P 
Sbjct: 294 DIPGAMD--LLLSLPLVIGTIPL 314

Rattus norvegicus (taxid: 10116)

>sp|Q0VCA2|ARRD3_BOVIN Arrestin domain-containing protein 3 OS=Bos taurus GN=ARRDC3 PE=2 SV=1

 Score = 67.0 bits (162), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 77/134 (57%), Gaps = 8/134 (5%)

Query: 279 SSGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALTETIQYLARNKVLESET 338
           +SGP+     ++R GY PGE+I I A + N S   V   KAA+ +T  + A+ K+   E 
Sbjct: 187 TSGPISLSAKIERKGYTPGESIQIFAEIENCSSRMV-VPKAAIYQTQAFYAKGKM--KEV 243

Query: 339 RELASLTRGK-IKPGERDDWTNQQLYVPPLPPTNLRGCHLIKIQYDVFFIVD-PKSIEKP 396
           ++L +  RG+ +  G+ + W  + L +PP+ P+ L  C +I+++Y +   VD P +++  
Sbjct: 244 KQLVANLRGESLSSGKTETWNGKLLKIPPVSPSIL-DCSIIRVEYSLMVYVDIPGAMD-- 300

Query: 397 VKLQLPIMLATYPF 410
           + L LP+++ T P 
Sbjct: 301 LFLNLPLVIGTIPL 314

Bos taurus (taxid: 9913)

>sp|Q8TBH0|ARRD2_HUMAN Arrestin domain-containing protein 2 OS=Homo sapiens GN=ARRDC2 PE=2 SV=2

 Score = 63.9 bits (154), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 66/164 (40%), Gaps = 20/164 (12%)

Query: 117 LSPGIHSFPFKLGLPLGLPSTFLGKHGWVQYFCKAALREPTGYTHKNQQVFIIMSPIDLN 176
           L PG H F F   LP  L ++F GKHG V+Y  KA L  P     + ++VF ++ P+D+N
Sbjct: 99  LPPGRHEFLFSFQLPPTLVTSFEGKHGSVRYCIKATLHRPWVPARRARKVFTVIEPVDIN 158

Query: 177 LEPPILSVFIIMSPIDLNLEPPILSQPFDCEIEHKLGVACVSSGPVLCRVSLDRGGYVPG 236
                                P L  P     E        + G V     +DR GY PG
Sbjct: 159 T--------------------PALLAPQAGAREKVARSWYCNRGLVSLSAKIDRKGYTPG 198

Query: 237 ETIIINATVYNRSKITVKSTKAALTEQPFDCEIEHKLGVACVSS 280
           E I + A + N S   V    A +  Q F      K   A V+S
Sbjct: 199 EVIPVFAEIDNGSTRPVLPRAAVVQTQTFMARGARKQKRAVVAS 242

Homo sapiens (taxid: 9606)

>sp|Q7TP90|ARRD4_RAT Arrestin domain-containing protein 4 OS=Rattus norvegicus GN=Arrdc4 PE=2 SV=1

 Score = 62.8 bits (151), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 52/154 (33%), Positives = 77/154 (50%), Gaps = 15/154 (9%)

Query: 270 EHKLGVACVSSGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALTETIQYLA 329
           E  +G    +SGPV   V ++R GY  GE I I A + N S   V   KAA+ +T  YLA
Sbjct: 69  EKMVGCWLFTSGPVSLSVKIERKGYCNGEAIPIYAEIENCSSRLVVP-KAAIFQTQTYLA 127

Query: 330 RNKVLESETRELASLTRGK-IKPGERDDWTNQQLYVPPLPPTNLRGCHLIKIQYDVFFIV 388
             K      R + +  RG  I  G  D W  + L +PP+ P+ L  C +I++     +I 
Sbjct: 128 SGKT--KTVRHMVANVRGNHIGSGSTDTWNGKMLKIPPVTPSILDCC-IIRV-----YIH 179

Query: 389 DPKSIEKPVKLQLPIMLATYPFRQDDGSLQRKSS 422
            P +  K + L+LP+++ T P+    G  +R SS
Sbjct: 180 IPGA--KKLMLELPLVIGTIPY---SGFGRRNSS 208

Rattus norvegicus (taxid: 10116)

>sp|Q8N5I2|ARRD1_HUMAN Arrestin domain-containing protein 1 OS=Homo sapiens GN=ARRDC1 PE=2 SV=1

 Score = 60.8 bits (146), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 65/138 (47%), Gaps = 5/138 (3%)

Query: 262 EQPFDCEIEHKLGVACVSSGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAAL 321
           EQP       K     V +G V+   S D  GYV G+ + ++A V N+S        A+L
Sbjct: 145 EQPNVASATKKFSYKLVKTGSVVLTASTDLRGYVVGQALQLHADVENQSGKDTSPVVASL 204

Query: 322 TETIQYLARNKVLESETRELASLTRGKIKPGERDDWTNQQLYVPPLPPTNLRGCHLIKIQ 381
            + + Y A+  +   + R +A +    +K   R  W ++Q+ VP LP + L GC LI I 
Sbjct: 205 LQKVSYKAKRWI--HDVRTIAEVEGAGVKAWRRAQW-HEQILVPALPQSALPGCSLIHID 261

Query: 382 YDVFFIVDPKSIEKPVKL 399
           Y  +  V  K+ E  V L
Sbjct: 262 Y--YLQVSLKAPEATVTL 277

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	446
321457519	336	hypothetical protein DAPPUDRAFT_63009 [D	0.562	0.747	0.558	8e-95
242007669	318	arrestin domain-containing protein, puta	0.562	0.789	0.558	8e-94
91092722	333	PREDICTED: similar to AGAP002691-PA [Tri	0.565	0.756	0.542	1e-92
383852390	338	PREDICTED: arrestin domain-containing pr	0.573	0.757	0.537	2e-91
66505138	338	PREDICTED: arrestin domain-containing pr	0.573	0.757	0.531	3e-88
340709919	338	PREDICTED: arrestin domain-containing pr	0.573	0.757	0.528	4e-88
380028153	338	PREDICTED: arrestin domain-containing pr	0.573	0.757	0.528	4e-88
332025797	338	Arrestin domain-containing protein 3 [Ac	0.573	0.757	0.522	2e-87
307199143	338	Arrestin domain-containing protein 3 [Ha	0.573	0.757	0.525	3e-87
307176567	338	Arrestin domain-containing protein 3 [Ca	0.573	0.757	0.525	4e-87

>gi|321457519|gb|EFX68604.1| hypothetical protein DAPPUDRAFT_63009 [Daphnia pulex]

 Score =  353 bits (907), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 185/331 (55%), Positives = 215/331 (64%), Gaps = 80/331 (24%)

Query: 111 GQAPVLLSPGIHSFPFKLGLPLGLPSTFLGKHGWVQYFCKAALREPTGYTHKNQQVFIIM 170
           GQ PVLLSPGIHSFPFKLGLPLGLPSTFLGKHGWVQY+CKAA REP G  HKNQQVFI+M
Sbjct: 84  GQGPVLLSPGIHSFPFKLGLPLGLPSTFLGKHGWVQYYCKAAFREPAGLLHKNQQVFIVM 143

Query: 171 SPIDLNLEPPILSVFIIMSPIDLNLEPPILSQPFDCEIEHKLGVACVSSGPVLCRVSLDR 230
           +PIDLN                  LEPPIL+QPF CEIEH+LG+ C +SGPV CRV LDR
Sbjct: 144 NPIDLN------------------LEPPILAQPFHCEIEHRLGLNCFTSGPVSCRVRLDR 185

Query: 231 GGYVPGETIIINATVYNRSKITVKSTKAALTEQPFDCEIEHKLGVACVSSGPVLCRVSLD 290
           GGYVPGETI I A+V+N+S++T+K TKA+LTE                            
Sbjct: 186 GGYVPGETIGIWASVHNQSRVTIKRTKASLTE---------------------------- 217

Query: 291 RGGYVPGETIIINATVYNRSKITVKSTKAALTETIQYLARNKVLESETRELASLTRGKIK 350
                         T+   +K  V  T+   T  +  L R K+                K
Sbjct: 218 --------------TIQYMAKNRVVQTE---TRELASLNRGKI----------------K 244

Query: 351 PGERDDWTNQQLYVPPLPPTNLRGCHLIKIQYDVFFIVDPKSIEKPVKLQLPIMLATYPF 410
            GE DDW N+QLYVPPLPPTNLRGCH+I+IQYDVFF ++P S+EKP+KLQLPIMLATYP 
Sbjct: 245 AGETDDWRNEQLYVPPLPPTNLRGCHIIRIQYDVFFQIEPHSMEKPIKLQLPIMLATYPL 304

Query: 411 RQDDGSLQRKSSGTHYPTTLPIFRPWLEEKA 441
           R DDG+L+RK  G HYP+TLPIFRPWL+EK 
Sbjct: 305 RSDDGTLRRK-RGAHYPSTLPIFRPWLDEKT 334

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242007669|ref|XP_002424653.1| arrestin domain-containing protein, putative [Pediculus humanus corporis] gi|212508127|gb|EEB11915.1| arrestin domain-containing protein, putative [Pediculus humanus corporis]

 Score =  350 bits (898), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 185/331 (55%), Positives = 219/331 (66%), Gaps = 80/331 (24%)

Query: 111 GQAPVLLSPGIHSFPFKLGLPLGLPSTFLGKHGWVQYFCKAALREPTGYTHKNQQVFIIM 170
           GQ PV+LSPGIHSFPFKLGLPLGLPSTFLGKHGWVQYFCKAALREP G THKNQQV I++
Sbjct: 66  GQGPVILSPGIHSFPFKLGLPLGLPSTFLGKHGWVQYFCKAALREPNGLTHKNQQVLIVI 125

Query: 171 SPIDLNLEPPILSVFIIMSPIDLNLEPPILSQPFDCEIEHKLGVACVSSGPVLCRVSLDR 230
           +PIDL                  NLEPP L+QPF CEIEHKLGV+C++SGPV CRVSLDR
Sbjct: 126 NPIDL------------------NLEPPTLAQPFRCEIEHKLGVSCMNSGPVSCRVSLDR 167

Query: 231 GGYVPGETIIINATVYNRSKITVKSTKAALTEQPFDCEIEHKLGVACVSSGPVLCRVSLD 290
           GGYV GETI I+AT+ N+SK+T+KSTKA+LTE      I+                    
Sbjct: 168 GGYVAGETIGISATIVNKSKVTIKSTKASLTET-----IQ-------------------- 202

Query: 291 RGGYVPGETIIINATVYNRSKITVKSTKAALTETIQYLARNKVLESETRELASLTRGKIK 350
              Y+  E +I +                  T  +  L+R K+                +
Sbjct: 203 ---YMAKEKVIYSE-----------------TRELASLSRGKI----------------R 226

Query: 351 PGERDDWTNQQLYVPPLPPTNLRGCHLIKIQYDVFFIVDPKSIEKPVKLQLPIMLATYPF 410
            GE D+W N+QLYVPPLPPTNLRGCHLIKIQYDVFFI+ PKS EK +KLQLPI++ATYP 
Sbjct: 227 SGESDEWKNEQLYVPPLPPTNLRGCHLIKIQYDVFFILTPKSFEKEIKLQLPIVMATYPL 286

Query: 411 RQDDGSLQRKSSGTHYPTTLPIFRPWLEEKA 441
           R  +G+L++K  GTHYP+TLPIFRPWL+EK 
Sbjct: 287 RASEGTLKKK-QGTHYPSTLPIFRPWLDEKT 316

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91092722|ref|XP_972691.1| PREDICTED: similar to AGAP002691-PA [Tribolium castaneum] gi|270014876|gb|EFA11324.1| hypothetical protein TcasGA2_TC010863 [Tribolium castaneum]

 Score =  346 bits (888), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 180/332 (54%), Positives = 218/332 (65%), Gaps = 80/332 (24%)

Query: 111 GQAPVLLSPGIHSFPFKLGLPLGLPSTFLGKHGWVQYFCKAALREPTGYTHKNQQVFIIM 170
           GQ P +LSPGIHSFPFKLGLPLGLPSTFLGKHGWVQYFCKAALREP G THKNQQVFI+M
Sbjct: 80  GQGPSVLSPGIHSFPFKLGLPLGLPSTFLGKHGWVQYFCKAALREPNGLTHKNQQVFIVM 139

Query: 171 SPIDLNLEPPILSVFIIMSPIDLNLEPPILSQPFDCEIEHKLGVACVSSGPVLCRVSLDR 230
           +PI                  DLNLEP  L + F CE+EHK GV+CV SG V+C+V+LDR
Sbjct: 140 NPI------------------DLNLEPSTLGETFRCEVEHKFGVSCVGSGSVVCKVTLDR 181

Query: 231 GGYVPGETIIINATVYNRSKITVKSTKAALTEQPFDCEIEHKLGVACVSSGPVLCRVSLD 290
           GGYVPGE+I + A+VYNRS++T+KST+AALTE            +A ++ G V       
Sbjct: 182 GGYVPGESIGVTASVYNRSRVTIKSTRAALTES-----------IAYMARGKV------- 223

Query: 291 RGGYVPGETIIINATVYNRSKITVKSTKAALTETIQYLARNKVLESETRELASLTRGKIK 350
                                  V+S K  L      LAR K                I+
Sbjct: 224 -----------------------VQSEKRELAS----LARGK----------------IR 240

Query: 351 PGERDDWTNQQLYVPPLPPTNLRGCHLIKIQYDVFFIVDPKSIEKPVKLQLPIMLATYPF 410
           PGE+D+W N+QLY+PPLPPTNLRGCHLIK+ YDV+FI++PK+++K VKLQLPI++ATYP 
Sbjct: 241 PGEKDEWINEQLYIPPLPPTNLRGCHLIKVNYDVYFIIEPKNLQKEVKLQLPIVMATYPL 300

Query: 411 RQDDGSLQRKSSGTHYPTTLPIFRPWLEEKAT 442
           R +D +   K SGTHYP+TLPIFRPWLE+K T
Sbjct: 301 RSEDDNSAYK-SGTHYPSTLPIFRPWLEDKPT 331

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383852390|ref|XP_003701711.1| PREDICTED: arrestin domain-containing protein 2-like [Megachile rotundata]

 Score =  342 bits (878), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 181/337 (53%), Positives = 217/337 (64%), Gaps = 81/337 (24%)

Query: 111 GQAPVLLSPGIHSFPFKLGLPLGLPSTFLGKHGWVQYFCKAALREPTGYTHKNQQVFIIM 170
           G+ P LLSPGIHSFPFKLGLPLGLPSTFLGKHGWVQY+CKAALREP G THKNQQ     
Sbjct: 80  GEGPSLLSPGIHSFPFKLGLPLGLPSTFLGKHGWVQYYCKAALREPGGLTHKNQQ----- 134

Query: 171 SPIDLNLEPPILSVFIIMSPIDLNLEPPILSQPFDCEIEHKLGVACVSSGPVLCRVSLDR 230
                        VFI+M+             P D  +E           P+L       
Sbjct: 135 -------------VFIVMN-------------PIDLNLEQ----------PILA------ 152

Query: 231 GGYVPGETIIINATVYNRSKITVKSTKAALTEQPFDCEIEHKLGVACVSSGPVLCRVSLD 290
                                           QP   EIE ++GV+CVS GPV CRVSLD
Sbjct: 153 --------------------------------QPARQEIEQRVGVSCVSGGPVFCRVSLD 180

Query: 291 RGGYVPGETIIINATVYNRSKITVKSTKAALTETIQYLARNKVLESETRELASLTRGKIK 350
           RGGYVPGETI I+ATV NRSK+T+KSTKA+LTETIQY  R KVL SETRELAS++RGKI+
Sbjct: 181 RGGYVPGETIGISATVSNRSKVTMKSTKASLTETIQYRCRGKVLASETRELASVSRGKIR 240

Query: 351 PGERDDWTNQQLYVPPLPPTNLRGCHLIKIQYDVFFIVDPKSIEKPVKLQLPIMLATYPF 410
           PGE ++W N+Q+YVPPLPPTNLRGC+LI + Y V+F++ PKS++K +KLQ+PI+LATYP 
Sbjct: 241 PGEGEEWLNEQMYVPPLPPTNLRGCNLINVLYHVYFVISPKSLDKEIKLQIPIVLATYPL 300

Query: 411 RQDDGSLQRKSS--GTHYPTTLPIFRPWLEEKATKIK 445
           RQ+        S  G HYP+TLPIFRPWL++KA +I+
Sbjct: 301 RQEGAPAGTAPSKRGAHYPSTLPIFRPWLDDKAFEIQ 337

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66505138|ref|XP_394372.2| PREDICTED: arrestin domain-containing protein 2 [Apis mellifera]

 Score =  332 bits (850), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 179/337 (53%), Positives = 218/337 (64%), Gaps = 81/337 (24%)

Query: 111 GQAPVLLSPGIHSFPFKLGLPLGLPSTFLGKHGWVQYFCKAALREPTGYTHKNQQVFIIM 170
           G+ P LLSPGIHSFPFKLGLPLGLPSTFLGKHGWVQY+CKAALREP G THKNQQVFI+M
Sbjct: 80  GEGPSLLSPGIHSFPFKLGLPLGLPSTFLGKHGWVQYYCKAALREPGGLTHKNQQVFIVM 139

Query: 171 SPIDLNLEPPILSVFIIMSPIDLNLEPPILSQPFDCEIEHKLGVACVSSGPVLCRVSLDR 230
           +PIDLN                  LEPPIL+QP   EIE ++GV+CVS GPV CRVSLDR
Sbjct: 140 NPIDLN------------------LEPPILAQPARQEIEQRVGVSCVSGGPVFCRVSLDR 181

Query: 231 GGYVPGETIIINATVYNRSKITVKSTKAALTEQPFDCEIEHKLGVACVSSGPVLCRVSLD 290
           GGYVPGETI I+ATV NRSK+T+KSTKA+LTE      I++            LCR    
Sbjct: 182 GGYVPGETIGISATVSNRSKVTMKSTKASLTET-----IQY------------LCR---- 220

Query: 291 RGGYVPGETIIINATVYNRSKITVKSTKAALTETIQYLARNKVLESETRELASLTRGKIK 350
                 G+ +                  A+ T  +  ++R K                I+
Sbjct: 221 ------GKVL------------------ASETRELASVSRGK----------------IR 240

Query: 351 PGERDDWTNQQLYVPPLPPTNLRGCHLIKIQYDVFFIVDPKSIEKPVKLQLPIMLATYPF 410
           PGE ++W N+Q+YVPPLPPTNLRGCHLI + Y V+FI+ PKS++K +KLQ+PI+LATYP 
Sbjct: 241 PGEGEEWLNEQMYVPPLPPTNLRGCHLINVLYHVYFIISPKSLDKEIKLQIPIVLATYPL 300

Query: 411 RQDDGSLQRKSS--GTHYPTTLPIFRPWLEEKATKIK 445
           RQ+        S  G HYP+TLPIFRPWL++KA +I+
Sbjct: 301 RQEGAPAGTAPSKRGAHYPSTLPIFRPWLDDKAFEIQ 337

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340709919|ref|XP_003393547.1| PREDICTED: arrestin domain-containing protein 2-like [Bombus terrestris] gi|350399263|ref|XP_003485473.1| PREDICTED: arrestin domain-containing protein 2-like [Bombus impatiens]

 Score =  331 bits (849), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 178/337 (52%), Positives = 218/337 (64%), Gaps = 81/337 (24%)

Query: 111 GQAPVLLSPGIHSFPFKLGLPLGLPSTFLGKHGWVQYFCKAALREPTGYTHKNQQVFIIM 170
           G+ P LLSPGIHSFPFKLGLPLGLPSTFLGKHGWVQY+CKAALREP G THKNQQVFI+M
Sbjct: 80  GEGPSLLSPGIHSFPFKLGLPLGLPSTFLGKHGWVQYYCKAALREPGGLTHKNQQVFIVM 139

Query: 171 SPIDLNLEPPILSVFIIMSPIDLNLEPPILSQPFDCEIEHKLGVACVSSGPVLCRVSLDR 230
           +PIDLN                  LEPPIL+QP   EIE ++GV+CVS GPV CRVSLDR
Sbjct: 140 NPIDLN------------------LEPPILAQPARQEIEQRVGVSCVSGGPVFCRVSLDR 181

Query: 231 GGYVPGETIIINATVYNRSKITVKSTKAALTEQPFDCEIEHKLGVACVSSGPVLCRVSLD 290
           GGYVPGETI I+ATV NRSK+T+KSTKA+LTE      I++            LCR    
Sbjct: 182 GGYVPGETIGISATVSNRSKVTMKSTKASLTET-----IQY------------LCR---- 220

Query: 291 RGGYVPGETIIINATVYNRSKITVKSTKAALTETIQYLARNKVLESETRELASLTRGKIK 350
                 G+ +                  A+ T  +  ++R K                I+
Sbjct: 221 ------GKVL------------------ASETRELASVSRGK----------------IR 240

Query: 351 PGERDDWTNQQLYVPPLPPTNLRGCHLIKIQYDVFFIVDPKSIEKPVKLQLPIMLATYPF 410
           PGE ++W N+Q+YVPPLPPTNLRGCHLI + Y V+F++ PKS++K +KLQ+PI+LATYP 
Sbjct: 241 PGEGEEWLNEQMYVPPLPPTNLRGCHLINVLYHVYFVISPKSLDKEIKLQIPIVLATYPL 300

Query: 411 RQDDGSLQRKSS--GTHYPTTLPIFRPWLEEKATKIK 445
           RQ+        S  G HYP+TLPIFRPWL++KA +I+
Sbjct: 301 RQEGAPAGTAPSKRGAHYPSTLPIFRPWLDDKAFEIQ 337

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380028153|ref|XP_003697773.1| PREDICTED: arrestin domain-containing protein 3-like [Apis florea]

 Score =  331 bits (849), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 178/337 (52%), Positives = 218/337 (64%), Gaps = 81/337 (24%)

Query: 111 GQAPVLLSPGIHSFPFKLGLPLGLPSTFLGKHGWVQYFCKAALREPTGYTHKNQQVFIIM 170
           G+ P LLSPGIHSFPFKLGLPLGLPSTFLGKHGWVQY+CKAALREP G THKNQQVFI+M
Sbjct: 80  GEGPSLLSPGIHSFPFKLGLPLGLPSTFLGKHGWVQYYCKAALREPGGLTHKNQQVFIVM 139

Query: 171 SPIDLNLEPPILSVFIIMSPIDLNLEPPILSQPFDCEIEHKLGVACVSSGPVLCRVSLDR 230
           +PIDLN                  LEPPIL+QP   EIE ++GV+CVS GP+ CRVSLDR
Sbjct: 140 NPIDLN------------------LEPPILAQPARQEIEQRVGVSCVSGGPIFCRVSLDR 181

Query: 231 GGYVPGETIIINATVYNRSKITVKSTKAALTEQPFDCEIEHKLGVACVSSGPVLCRVSLD 290
           GGYVPGETI I+ATV NRSK+T+KSTKA+LTE      I++            LCR    
Sbjct: 182 GGYVPGETIGISATVSNRSKVTMKSTKASLTET-----IQY------------LCR---- 220

Query: 291 RGGYVPGETIIINATVYNRSKITVKSTKAALTETIQYLARNKVLESETRELASLTRGKIK 350
                 G+ +                  A+ T  +  ++R K                I+
Sbjct: 221 ------GKVL------------------ASETRELASVSRGK----------------IR 240

Query: 351 PGERDDWTNQQLYVPPLPPTNLRGCHLIKIQYDVFFIVDPKSIEKPVKLQLPIMLATYPF 410
           PGE ++W N+Q+YVPPLPPTNLRGCHLI + Y V+FI+ PKS++K +KLQ+PI+LATYP 
Sbjct: 241 PGEGEEWLNEQMYVPPLPPTNLRGCHLINVLYHVYFIISPKSLDKEIKLQIPIVLATYPL 300

Query: 411 RQDDGSLQRKSS--GTHYPTTLPIFRPWLEEKATKIK 445
           RQ+        S  G HYP+TLPIFRPWL++KA +I+
Sbjct: 301 RQEGAPAGTAPSKRGAHYPSTLPIFRPWLDDKAFEIQ 337

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332025797|gb|EGI65954.1| Arrestin domain-containing protein 3 [Acromyrmex echinatior]

 Score =  328 bits (842), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 176/337 (52%), Positives = 218/337 (64%), Gaps = 81/337 (24%)

Query: 111 GQAPVLLSPGIHSFPFKLGLPLGLPSTFLGKHGWVQYFCKAALREPTGYTHKNQQVFIIM 170
           G+ P LLSPGIHSFPFKLGLPLGLPSTFLGKHGWVQY+CKAALREP G THKNQQVFI+M
Sbjct: 80  GEGPSLLSPGIHSFPFKLGLPLGLPSTFLGKHGWVQYYCKAALREPGGLTHKNQQVFIVM 139

Query: 171 SPIDLNLEPPILSVFIIMSPIDLNLEPPILSQPFDCEIEHKLGVACVSSGPVLCRVSLDR 230
           +PIDLN                  LEPPIL+QP   EIE ++GV+CVS GPV CRVSLDR
Sbjct: 140 NPIDLN------------------LEPPILAQPARQEIEQRVGVSCVSGGPVFCRVSLDR 181

Query: 231 GGYVPGETIIINATVYNRSKITVKSTKAALTEQPFDCEIEHKLGVACVSSGPVLCRVSLD 290
           GGYVPGETI I+ATV NRSK+T+KSTKA+LTE      I++            LCR    
Sbjct: 182 GGYVPGETIGISATVSNRSKVTMKSTKASLTET-----IQY------------LCR---- 220

Query: 291 RGGYVPGETIIINATVYNRSKITVKSTKAALTETIQYLARNKVLESETRELASLTRGKIK 350
                 G+ +                  A+ T  +  ++R K+                +
Sbjct: 221 ------GKVL------------------ASETRELASVSRGKI----------------R 240

Query: 351 PGERDDWTNQQLYVPPLPPTNLRGCHLIKIQYDVFFIVDPKSIEKPVKLQLPIMLATYPF 410
           PGE ++W N+Q+YVPPLPPTNLRGCHLI + Y V+F++ PKS++K +KLQ+PI+LATYP 
Sbjct: 241 PGESEEWLNEQMYVPPLPPTNLRGCHLINVLYHVYFVISPKSLDKEIKLQIPIVLATYPL 300

Query: 411 RQDDGSLQRKSS--GTHYPTTLPIFRPWLEEKATKIK 445
           R +   +    S  G HYP+TLPIFRPWL++KA +I+
Sbjct: 301 RPEGAPVGTAPSKRGAHYPSTLPIFRPWLDDKAFEIQ 337

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307199143|gb|EFN79853.1| Arrestin domain-containing protein 3 [Harpegnathos saltator]

 Score =  328 bits (841), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 177/337 (52%), Positives = 217/337 (64%), Gaps = 81/337 (24%)

Query: 111 GQAPVLLSPGIHSFPFKLGLPLGLPSTFLGKHGWVQYFCKAALREPTGYTHKNQQVFIIM 170
           G+ P LLSPGIHSFPFKLGLPLGLPSTFLGKHGWVQY+CKAALREP G THKNQQVFI+M
Sbjct: 80  GEGPSLLSPGIHSFPFKLGLPLGLPSTFLGKHGWVQYYCKAALREPGGLTHKNQQVFIVM 139

Query: 171 SPIDLNLEPPILSVFIIMSPIDLNLEPPILSQPFDCEIEHKLGVACVSSGPVLCRVSLDR 230
           +PIDLN                  LEPPIL+QP   EIE ++GV+CVS GPV CRVSLDR
Sbjct: 140 NPIDLN------------------LEPPILAQPARQEIEQRVGVSCVSGGPVFCRVSLDR 181

Query: 231 GGYVPGETIIINATVYNRSKITVKSTKAALTEQPFDCEIEHKLGVACVSSGPVLCRVSLD 290
           GGYVPGETI I+ATV NRSK+T+KSTKA+LTE      I++            LCR    
Sbjct: 182 GGYVPGETIGISATVSNRSKVTMKSTKASLTET-----IQY------------LCR---- 220

Query: 291 RGGYVPGETIIINATVYNRSKITVKSTKAALTETIQYLARNKVLESETRELASLTRGKIK 350
                 G+ +                  A+ T  +  ++R K                I+
Sbjct: 221 ------GKVL------------------ASETRELASVSRGK----------------IR 240

Query: 351 PGERDDWTNQQLYVPPLPPTNLRGCHLIKIQYDVFFIVDPKSIEKPVKLQLPIMLATYPF 410
           PGE ++W N+Q+YVPPLPPTNLRGCHLI + Y V+F++ PKS++K +KLQ+PI+LATYP 
Sbjct: 241 PGEGEEWLNEQMYVPPLPPTNLRGCHLINVLYHVYFVISPKSLDKEIKLQIPIVLATYPL 300

Query: 411 RQDDGSLQRKSS--GTHYPTTLPIFRPWLEEKATKIK 445
           R +        S  G HYP+TLPIFRPWL++KA +I+
Sbjct: 301 RPEGAPAGTAPSKRGAHYPSTLPIFRPWLDDKAFEIQ 337

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307176567|gb|EFN66054.1| Arrestin domain-containing protein 3 [Camponotus floridanus]

 Score =  328 bits (841), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 177/337 (52%), Positives = 217/337 (64%), Gaps = 81/337 (24%)

Query: 111 GQAPVLLSPGIHSFPFKLGLPLGLPSTFLGKHGWVQYFCKAALREPTGYTHKNQQVFIIM 170
           G+ P LLSPGIHSFPFKLGLPLGLPSTFLGKHGWVQY+CKAALREP G THKNQQVFI+M
Sbjct: 80  GEGPSLLSPGIHSFPFKLGLPLGLPSTFLGKHGWVQYYCKAALREPGGLTHKNQQVFIVM 139

Query: 171 SPIDLNLEPPILSVFIIMSPIDLNLEPPILSQPFDCEIEHKLGVACVSSGPVLCRVSLDR 230
           +PIDLN                  LEPPIL+QP   EIE ++GV+CVS GPV CRVSLDR
Sbjct: 140 NPIDLN------------------LEPPILAQPARQEIEQRVGVSCVSGGPVFCRVSLDR 181

Query: 231 GGYVPGETIIINATVYNRSKITVKSTKAALTEQPFDCEIEHKLGVACVSSGPVLCRVSLD 290
           GGYVPGETI I+ATV NRSK+T+KSTKA+LTE      I++            LCR    
Sbjct: 182 GGYVPGETIGISATVSNRSKVTMKSTKASLTET-----IQY------------LCR---- 220

Query: 291 RGGYVPGETIIINATVYNRSKITVKSTKAALTETIQYLARNKVLESETRELASLTRGKIK 350
                 G+ +                  A+ T  +  ++R K                I+
Sbjct: 221 ------GKVL------------------ASETRELASVSRGK----------------IR 240

Query: 351 PGERDDWTNQQLYVPPLPPTNLRGCHLIKIQYDVFFIVDPKSIEKPVKLQLPIMLATYPF 410
           PGE ++W N+Q+YVPPLPPTNLRGCHLI + Y V+F++ PKS++K +KLQ+PI+LATYP 
Sbjct: 241 PGEGEEWLNEQMYVPPLPPTNLRGCHLINVLYHVYFVISPKSLDKEIKLQIPIVLATYPL 300

Query: 411 RQDDGSLQRKSS--GTHYPTTLPIFRPWLEEKATKIK 445
           R +        S  G HYP+TLPIFRPWL++KA +I+
Sbjct: 301 RPEGAPAGTAPSKRGAHYPSTLPIFRPWLDDKAFEIQ 337

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	446
FB|FBgn0035103	342	Vdup1 "Vitamin D[[3]] up-regul	0.396	0.517	0.641	1.7e-88
UNIPROTKB|E1BZL4	401	ARRDC2 "Uncharacterized protei	0.322	0.359	0.313	1.3e-18
ZFIN|ZDB-GENE-040912-182	412	arrdc3b "arrestin domain conta	0.278	0.300	0.350	2.3e-18
RGD|1309659	407	Arrdc2 "arrestin domain contai	0.280	0.307	0.325	2.8e-17
UNIPROTKB|E2RM03	407	ARRDC2 "Uncharacterized protei	0.309	0.339	0.328	8.9e-17
UNIPROTKB|Q8TBH0	407	ARRDC2 "Arrestin domain-contai	0.309	0.339	0.328	1.4e-16
ZFIN|ZDB-GENE-030131-2913	414	arrdc3a "arrestin domain conta	0.313	0.338	0.311	2e-16
ZFIN|ZDB-GENE-030131-7146	407	arrdc2 "arrestin domain contai	0.345	0.378	0.287	4.9e-16
UNIPROTKB|F1PZM7	414	ARRDC3 "Uncharacterized protei	0.280	0.301	0.330	6.6e-16
MGI|MGI:1918057	407	Arrdc2 "arrestin domain contai	0.280	0.307	0.317	1.1e-15

FB|FBgn0035103 Vdup1 "Vitamin D[[3]] up-regulated protein 1" [Drosophila melanogaster (taxid:7227)]

 Score = 647 (232.8 bits), Expect = 1.7e-88, Sum P(2) = 1.7e-88
 Identities = 120/187 (64%), Positives = 147/187 (78%)

Query:   263 QPFDCEIEHKLGVACVSSGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALT 322
             QPF CE+EHKLGV CV  G + CRVSLDRGGYVPGE I++ A + N S +++K TKA+LT
Sbjct:   153 QPFTCEVEHKLGVVCVGGGQIKCRVSLDRGGYVPGENILVTAFISNYSNVSIKRTKASLT 212

Query:   323 ETIQYLARNKVLESETRELASLTRGKIKPGERDDWTNQQLYVPPLPPTNLRGCHLIKIQY 382
             ETI+YLAR KV+++E RELA L RGKI+PG +D+W N+ LYVPPLPPTNL GCHLIKI Y
Sbjct:   213 ETIEYLARGKVVQTEKRELAVLVRGKIRPGAKDEWHNE-LYVPPLPPTNLHGCHLIKISY 271

Query:   383 DVFFIVDPKSIEKPVKLQLPIMLATYPFRQD-DG--------SLQRKSSGTHYPTTLPIF 433
             DVFF+++PKS+EK +KLQLPI+LATYPFR   D         S+ +  + THYP+TLPIF
Sbjct:   272 DVFFVIEPKSMEKEIKLQLPIVLATYPFRHSGDAVNANTWPESVLKPDTHTHYPSTLPIF 331

Query:   434 RPWLEEK 440
             RPWL EK
Sbjct:   332 RPWLHEK 338

GO:0007165 "signal transduction" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0010629 "negative regulation of gene expression" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

UNIPROTKB|E1BZL4 ARRDC2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 173 (66.0 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
 Identities = 47/150 (31%), Positives = 78/150 (52%)

Query:   281 GPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALTETIQYLARNKVLESETRE 340
             G V     +DR GY PGE I I A + N +   V   KAA+ +T  ++AR    + ++  
Sbjct:   179 GQVSVSAKIDRKGYTPGEVIPIFAEIDNCTNRAVVP-KAAIIQTQTFIARGTKKQKKS-V 236

Query:   341 LASLTRGKIKPGERDDWTNQQLYVPPLPPTNLRGCHLIKIQYDVFFIVDPKSIEKPVKLQ 400
             + S+    I  G+R+ W  + L +PP+ P+ L+ C +I+++Y +   VD     K + L+
Sbjct:   237 VTSIVGDSIAAGKREAWHGRALKIPPVGPSILQ-CRIIQVEYSLKVCVDIPGTSK-LLLE 294

Query:   401 LPIMLATYPFRQDDGSLQRKSSGTHYPTTL 430
             LP+++ T P     GS +  S  + Y  TL
Sbjct:   295 LPLVIGTIPLHPF-GS-RTSSVSSQYSVTL 322

GO:0007165 "signal transduction" evidence=IEA

ZFIN|ZDB-GENE-040912-182 arrdc3b "arrestin domain containing 3b" [Danio rerio (taxid:7955)]

 Score = 193 (73.0 bits), Expect = 2.3e-18, Sum P(2) = 2.3e-18
 Identities = 47/134 (35%), Positives = 77/134 (57%)

Query:   279 SSGPVLCRVSLDRGGYVPGETIIINATVYN-RSKITVKSTKAALTETIQYLARNKVLESE 337
             +SGPV     ++R GY PGETI I A + N  S++ V   KAAL +T  + A+ KV   E
Sbjct:   187 TSGPVSLSAKIERKGYTPGETIQIFAEIENCSSRVVVP--KAALYQTQTFFAKGKV--KE 242

Query:   338 TRELASLTRGK-IKPGERDDWTNQQLYVPPLPPTNLRGCHLIKIQYDVFFIVD-PKSIEK 395
              ++L +  RG  +  G+ + W  + L +PP+ P+ L  C +I ++Y +   VD P+++  
Sbjct:   243 IKQLIANLRGDPLHSGKTETWDGKMLKIPPISPSIL-DCSIIHVEYSLMVYVDIPRAVN- 300

Query:   396 PVKLQLPIMLATYP 409
              + L LP+++ T P
Sbjct:   301 -LTLNLPLVIGTIP 313

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

RGD|1309659 Arrdc2 "arrestin domain containing 2" [Rattus norvegicus (taxid:10116)]

 Score = 162 (62.1 bits), Expect = 2.8e-17, Sum P(2) = 2.8e-17
 Identities = 42/129 (32%), Positives = 67/129 (51%)

Query:   281 GPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALTETIQYLARNKVLESETRE 340
             G V     +DR GY PGE I I A + N S   V+  +AAL +T  ++AR    + +   
Sbjct:   182 GLVSLSAKIDRKGYTPGEVIPIFAEIDNGSTRAVQP-RAALVQTQTFMARG-ARKQKCAV 239

Query:   341 LASLTRGKIKPGERDDWTNQQLYVPPLPPTNLRGCHLIKIQYDVFFIVDPKSIEKPVKLQ 400
             +AS+    + PG R  W  + L +PP+ P+ L  C ++ + Y +   VD     K + L+
Sbjct:   240 VASVDGEPVGPGRRALWPGRALRIPPVGPSILH-CRVLSVDYSLKVCVDIPGSSK-LLLE 297

Query:   401 LPIMLATYP 409
             LP+++ T P
Sbjct:   298 LPLVIGTVP 306

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|E2RM03 ARRDC2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 163 (62.4 bits), Expect = 8.9e-17, Sum P(2) = 8.9e-17
 Identities = 48/146 (32%), Positives = 74/146 (50%)

Query:   281 GPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALTETIQYLARNKVLESETRE 340
             G V     +DR GY PGE I + A + N S   V   +AA+ +T  ++AR    + +   
Sbjct:   182 GLVSLSAKIDRKGYTPGEVIPVFAEIDNGSTRPVLP-RAAVVQTQTFMARG-ARKQKRAV 239

Query:   341 LASLTRGKIKPGERDDWTNQQLYVPPLPPTNLRGCHLIKIQYDVFFIVDPKSIEKPVKLQ 400
             +ASL    + PG R  W  + L +PP+ P+ L  C ++ + Y +   VD     K + L+
Sbjct:   240 VASLAGEPVGPGRRALWQGRALRIPPVGPSILH-CRVLHVDYSLKVCVDIPGTSK-LLLE 297

Query:   401 LPIMLATYPFRQDDGSLQRKSS-GTH 425
             LP+++ T P     GS  R SS G+H
Sbjct:   298 LPLVIGTIPLHPF-GS--RSSSVGSH 320

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|Q8TBH0 ARRDC2 "Arrestin domain-containing protein 2" [Homo sapiens (taxid:9606)]

 Score = 163 (62.4 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
 Identities = 48/146 (32%), Positives = 75/146 (51%)

Query:   281 GPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALTETIQYLARNKVLESETRE 340
             G V     +DR GY PGE I + A + N S   V   +AA+ +T  ++AR    + +   
Sbjct:   182 GLVSLSAKIDRKGYTPGEVIPVFAEIDNGSTRPVLP-RAAVVQTQTFMARG-ARKQKRAV 239

Query:   341 LASLTRGKIKPGERDDWTNQQLYVPPLPPTNLRGCHLIKIQYDVFFIVDPKSIEKPVKLQ 400
             +ASL    + PG+R  W  + L +PP+ P+ L  C ++ + Y +   VD     K + L+
Sbjct:   240 VASLAGEPVGPGQRALWQGRALRIPPVGPSILH-CRVLHVDYALKVCVDIPGTSK-LLLE 297

Query:   401 LPIMLATYPFRQDDGSLQRKSS-GTH 425
             LP+++ T P     GS  R SS G+H
Sbjct:   298 LPLVIGTIPLHPF-GS--RSSSVGSH 320

GO:0007165 "signal transduction" evidence=IEA

ZFIN|ZDB-GENE-030131-2913 arrdc3a "arrestin domain containing 3a" [Danio rerio (taxid:7955)]

 Score = 184 (69.8 bits), Expect = 2.0e-16, Sum P(2) = 2.0e-16
 Identities = 47/151 (31%), Positives = 83/151 (54%)

Query:   279 SSGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALTETIQYLARNKVLESET 338
             +SGP+     ++R GY PGE+I I A + N S   V   KAA+ +T  + A+ K+   E 
Sbjct:   187 TSGPISLSAKIERKGYTPGESIQIFAEIENCSSRMVVP-KAAIYQTQTFFAKGKM--KEI 243

Query:   339 RELASLTRGK-IKPGERDDWTNQQLYVPPLPPTNLRGCHLIKIQYDVFFIVD-PKSIEKP 396
             ++L +  RG+ +  G+ + W  + L +PP+ P+ L  C +I+++Y +   VD P ++   
Sbjct:   244 KQLVANIRGESLSSGKTETWNGKMLKIPPVSPSIL-DCSIIRVEYSLMVYVDIPGAMN-- 300

Query:   397 VKLQLPIMLAT---YPFRQDDGSLQRKSSGT 424
             + L LP+++ T   +PF     S+  + S T
Sbjct:   301 LSLNLPLVIGTIPLHPFGSRTSSVSSQCSMT 331

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

ZFIN|ZDB-GENE-030131-7146 arrdc2 "arrestin domain containing 2" [Danio rerio (taxid:7955)]

 Score = 169 (64.5 bits), Expect = 4.9e-16, Sum P(2) = 4.9e-16
 Identities = 46/160 (28%), Positives = 81/160 (50%)

Query:   281 GPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALTETIQYLARNKVLESETRE 340
             G V     +DR GY PGE I + A   N +  +V   KA +T+T  ++AR   ++ +   
Sbjct:   183 GQVSITAKIDRKGYTPGEVIPVFAEFDNSTSRSVVP-KAYITQTQTFIARG-TMKQKRAV 240

Query:   341 LASLTRGKIKPGERDDWTNQQLYVPPLPPTNLRGCHLIKIQYDVFFIVDPKSIEKPVKLQ 400
             +A+L    + P  R+ W  + + +PP+ P+ L+ C +IK++Y +   VD     K + L+
Sbjct:   241 VATLCGDIVGPRRRETWHGRAIKIPPVGPSILQ-CRIIKVEYMLRVCVDVPGTSK-LSLE 298

Query:   401 LPIMLATYPFRQDDGSLQRKSSGTHYPTTLPIFRPWLEEK 440
             LP+++ T P     GS +  S  + Y   +   R  + E+
Sbjct:   299 LPLVMGTIPLHPF-GS-RTSSVSSQYSVNMEWLRMAIPEQ 336

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|F1PZM7 ARRDC3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 184 (69.8 bits), Expect = 6.6e-16, Sum P(2) = 6.6e-16
 Identities = 44/133 (33%), Positives = 77/133 (57%)

Query:   279 SSGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALTETIQYLARNKVLESET 338
             +SGP+     ++R GY PGE+I I A + N S   V   KAA+ +T  + A+ K+   E 
Sbjct:   187 TSGPISLSAKIERKGYTPGESIQIFAEIENCSSRMVVP-KAAIYQTQAFYAKGKM--KEV 243

Query:   339 RELASLTRGK-IKPGERDDWTNQQLYVPPLPPTNLRGCHLIKIQYDVFFIVD-PKSIEKP 396
             ++L +  RG+ +  G+ D W  + L +PP+ P+ L  C +I+++Y +   VD P +++  
Sbjct:   244 KQLVANLRGESLSSGKTDTWNGKLLKIPPVSPSIL-DCSIIRVEYSLMVYVDIPGAMD-- 300

Query:   397 VKLQLPIMLATYP 409
             + L LP+++ T P
Sbjct:   301 LFLNLPLVIGTIP 313

GO:0090327 "negative regulation of locomotion involved in locomotory behavior" evidence=IEA

GO:0071879 "positive regulation of adrenergic receptor signaling pathway" evidence=IEA

GO:0060613 "fat pad development" evidence=IEA

GO:0044252 "negative regulation of multicellular organismal metabolic process" evidence=IEA

GO:0031699 "beta-3 adrenergic receptor binding" evidence=IEA

GO:0031651 "negative regulation of heat generation" evidence=IEA

GO:0001659 "temperature homeostasis" evidence=IEA

MGI|MGI:1918057 Arrdc2 "arrestin domain containing 2" [Mus musculus (taxid:10090)]

 Score = 158 (60.7 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
 Identities = 41/129 (31%), Positives = 67/129 (51%)

Query:   281 GPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALTETIQYLARNKVLESETRE 340
             G V     +DR GY PGE I I A + N S   V+  +AAL +T  ++AR    + +   
Sbjct:   182 GLVSLSAKIDRKGYTPGEVIPIFAEIDNGSTRAVQP-RAALVQTQTFMARG-ARKQKRAV 239

Query:   341 LASLTRGKIKPGERDDWTNQQLYVPPLPPTNLRGCHLIKIQYDVFFIVDPKSIEKPVKLQ 400
             +AS+    + P  R  W  + L +PP+ P+ L+ C ++ + Y +   VD     K + L+
Sbjct:   240 VASVDGEPVGPNRRALWPGRALRIPPVGPSILQ-CRVLSVDYSLKVFVDIPGSSK-LLLE 297

Query:   401 LPIMLATYP 409
             LP+++ T P
Sbjct:   298 LPLVIGTVP 306

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0007165 "signal transduction" evidence=IEA

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	446
pfam02752	136	pfam02752, Arrestin_C, Arrestin (or S-antigen), C-	3e-28
smart01017	142	smart01017, Arrestin_C, Arrestin (or S-antigen), C	2e-25
pfam00339	148	pfam00339, Arrestin_N, Arrestin (or S-antigen), N-	5e-12
pfam08432	182	pfam08432, DUF1742, Fungal protein of unknown func	4e-06
pfam00183	529	pfam00183, HSP90, Hsp90 protein	3e-05
pfam07767	387	pfam07767, Nop53, Nop53 (60S ribosomal biogenesis)	5e-05
pfam00183	529	pfam00183, HSP90, Hsp90 protein	7e-05
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	1e-04
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	1e-04
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	1e-04
pfam00183	529	pfam00183, HSP90, Hsp90 protein	2e-04
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	2e-04
pfam06658	142	pfam06658, DUF1168, Protein of unknown function (D	3e-04
pfam08208	193	pfam08208, RNA_polI_A34, DNA-directed RNA polymera	3e-04
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	4e-04
pfam08208	193	pfam08208, RNA_polI_A34, DNA-directed RNA polymera	4e-04
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	6e-04
pfam08597	242	pfam08597, eIF3_subunit, Translation initiation fa	6e-04
pfam05793	528	pfam05793, TFIIF_alpha, Transcription initiation f	9e-04
pfam08597	242	pfam08597, eIF3_subunit, Translation initiation fa	0.001
pfam12569	516	pfam12569, NARP1, NMDA receptor-regulated protein	0.001
pfam08555	90	pfam08555, DUF1754, Eukaryotic family of unknown f	0.001
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	0.002
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	0.002
pfam14265	125	pfam14265, DUF4355, Domain of unknown function (DU	0.002
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	0.003
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	0.004
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	0.004
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	0.004
pfam09428	130	pfam09428, DUF2011, Fungal protein of unknown func	0.004
pfam05178	99	pfam05178, Kri1, KRI1-like family	0.004
pfam09756	189	pfam09756, DDRGK, DDRGK domain	0.004

>gnl|CDD|217215 pfam02752, Arrestin_C, Arrestin (or S-antigen), C-terminal domain

 Score =  108 bits (271), Expect = 3e-28
 Identities = 47/136 (34%), Positives = 71/136 (52%), Gaps = 4/136 (2%)

Query: 279 SSGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALTETIQYLARNKVLES-- 336
            SGPV   VSL + GYVPGETI I   + N+S   +K  K +L + + Y A+  +  +  
Sbjct: 1   WSGPVSLSVSLPKKGYVPGETIPITVEIDNQSSKKIKKIKISLVQQVTYKAKTPLRRTKN 60

Query: 337 ETRELASLTRGKIKPGERDDWT-NQQLYVPP-LPPTNLRGCHLIKIQYDVFFIVDPKSIE 394
           E R +A    G ++PG  D +     L +P  LPP++   C +IK+ Y +   VD     
Sbjct: 61  EERVVAKEESGGVEPGSSDKFEKELSLQIPTSLPPSSTTKCKIIKVSYKLKVTVDLSGSH 120

Query: 395 KPVKLQLPIMLATYPF 410
             ++L+LPI + T P 
Sbjct: 121 SELRLELPITIGTSPL 136

Ig-like beta-sandwich fold. Scop reports duplication with N-terminal domain. Length = 136

>gnl|CDD|214976 smart01017, Arrestin_C, Arrestin (or S-antigen), C-terminal domain

 Score =  100 bits (252), Expect = 2e-25
 Identities = 52/144 (36%), Positives = 74/144 (51%), Gaps = 14/144 (9%)

Query: 279 SSGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALTETIQY-LARNKVLESE 337
            SGP+   VSL + GYVPGETI +   + N SK TVK  K +L +T+ Y  +   V  S 
Sbjct: 1   WSGPLSLEVSLPKKGYVPGETIPVTIKITNLSKKTVKKIKVSLVQTVTYVSSDGPVKRSL 60

Query: 338 TRE-----------LASLTRGKIKPGERDDWTNQQLYVPPLPPTNLRGCHLIKIQYDVFF 386
             +           +  L  G + PG +D +   QL VPPLPPT+ R C LIK++Y +  
Sbjct: 61  AEKSKEKKADRKTLVKELDGGPVLPGNKDKFE-GQLKVPPLPPTS-RTCRLIKVEYKLKV 118

Query: 387 IVDPKSIEKPVKLQLPIMLATYPF 410
            +        ++L+LPI + T P 
Sbjct: 119 KLRLSGKHSELRLELPITIGTVPL 142

Ig-like beta-sandwich fold. Scop reports duplication with N-terminal domain. Arrestins comprise a family of closely-related proteins that includes beta-arrestin-1 and -2, which regulate the function of beta-adrenergic receptors by binding to their phosphorylated forms, impairing their capacity to activate G(S) proteins; Cone photoreceptors C-arrestin (arrestin-X). which could bind to phosphorylated red/green opsins; and Drosophila phosrestins I and II, which undergo light-induced phosphorylation, and probably play a role in photoreceptor transduction. Length = 142

>gnl|CDD|215866 pfam00339, Arrestin_N, Arrestin (or S-antigen), N-terminal domain

 Score = 63.1 bits (154), Expect = 5e-12
 Identities = 23/60 (38%), Positives = 33/60 (55%)

Query: 117 LSPGIHSFPFKLGLPLGLPSTFLGKHGWVQYFCKAALREPTGYTHKNQQVFIIMSPIDLN 176
           L  G H+FPF   LP   P +F G+ G ++Y  K  L  P    HK ++VF ++  +DLN
Sbjct: 89  LPAGTHAFPFSFELPPNCPPSFEGQPGGIRYEVKVELDRPWKKDHKRKKVFTVIRKLDLN 148

Ig-like beta-sandwich fold. Scop reports duplication with C-terminal domain. Length = 148

>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742)

 Score = 46.6 bits (111), Expect = 4e-06
 Identities = 20/54 (37%), Positives = 31/54 (57%)

Query: 7   EEKEDQEKEVGGISRGKEEETEEEKKKKKKKKKKKKKKKRYEEEEKEEEKDNKL 60
           EE E  +KE     + K ++ + +KKK K K KK  KK    E++ E+E ++KL
Sbjct: 69  EEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKL 122

This is a family of fungal proteins of unknown function. Length = 182

>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein

 Score = 45.9 bits (109), Expect = 3e-05
 Identities = 22/54 (40%), Positives = 34/54 (62%)

Query: 3  EKGGEEKEDQEKEVGGISRGKEEETEEEKKKKKKKKKKKKKKKRYEEEEKEEEK 56
          E+  EEKE++++E    +  +EE  EEE+K++KKKK KK K+   E E   + K
Sbjct: 38 EEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWELLNKTK 91

Length = 529

>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis)

 Score = 45.1 bits (107), Expect = 5e-05
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 6   GEEKEDQEKEVGGISRGKEEETEEEKKKKKKKKKKKKKKKRYEEEEKE-EEKDNKLLHN 63
           GEE+ D E    G     E   +  + K+K K ++ K+K+R E E +  EEK  K    
Sbjct: 249 GEEESDDESAWEGFESEYEPINKPVRPKRKTKAQRNKEKRRKELEREAKEEKQLKKKLA 307

This nucleolar family of proteins are involved in 60S ribosomal biogenesis. They are specifically involved in the processing beyond the 27S stage of 25S rRNA maturation. This family contains sequences that bear similarity to the glioma tumour suppressor candidate region gene 2 protein (p60). This protein has been found to interact with herpes simplex type 1 regulatory proteins. Length = 387

>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein

 Score = 44.8 bits (106), Expect = 7e-05
 Identities = 18/50 (36%), Positives = 29/50 (58%)

Query: 1  MNEKGGEEKEDQEKEVGGISRGKEEETEEEKKKKKKKKKKKKKKKRYEEE 50
            E+  E++E +E+E     + +E + EEEK++KKKK KK K+     E 
Sbjct: 37 DEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWEL 86

Length = 529

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 4/56 (7%)

Query: 4   KGGEEKEDQEKEVGGISRGKEEETEEEKKKKKKKKKKKKKKKRYEEEEKEEEKDNK 59
           + G  K    K        KE + E  K+++K+K++ K++KK+ +E+ KEE KD K
Sbjct: 81  EKGGSKGPAAKT----KPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRK 132

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 16/56 (28%), Positives = 36/56 (64%)

Query: 2   NEKGGEEKEDQEKEVGGISRGKEEETEEEKKKKKKKKKKKKKKKRYEEEEKEEEKD 57
           + K  E++++Q KE     + K +E  +++K K++ K+K+  K++ +E+EK+ E+ 
Sbjct: 102 SGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEP 157

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 22/53 (41%), Positives = 40/53 (75%)

Query: 7   EEKEDQEKEVGGISRGKEEETEEEKKKKKKKKKKKKKKKRYEEEEKEEEKDNK 59
            E+E +EK+    +  K+EE EEE+K+KK+++K++++++  EE+E+EEEK  K
Sbjct: 423 REEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKKK 475

Length = 482

>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 20/53 (37%), Positives = 33/53 (62%)

Query: 7  EEKEDQEKEVGGISRGKEEETEEEKKKKKKKKKKKKKKKRYEEEEKEEEKDNK 59
          +E+E++EKE       K  + EEE  ++++K++KKKK K+ +E   E E  NK
Sbjct: 37 DEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWELLNK 89

Length = 529

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 18/53 (33%), Positives = 41/53 (77%)

Query: 7   EEKEDQEKEVGGISRGKEEETEEEKKKKKKKKKKKKKKKRYEEEEKEEEKDNK 59
           + +E+++++      GK++E EEE++K+KK+++K+++++  EEE++EEE+  K
Sbjct: 422 KREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKK 474

Length = 482

>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168)

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 23/61 (37%), Positives = 41/61 (67%), Gaps = 5/61 (8%)

Query: 1   MNEKGGEEKEDQEKEVGGISRGKEEETEEEK--KKKKKKKKKKKKKKRYEEEEKEEEKDN 58
           M+EK  +E ED+E +     R +++  +EEK  KK+ K++KKK+KKK+ ++ +K  +K+ 
Sbjct: 55  MDEKWKKETEDEEFQ---QKREEKKRKDEEKTAKKRAKRQKKKQKKKKKKKAKKGNKKEE 111

Query: 59  K 59
           K
Sbjct: 112 K 112

This family consists of several hypothetical eukaryotic proteins of unknown function. Length = 142

>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit RPA34

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 21/57 (36%), Positives = 31/57 (54%)

Query: 3   EKGGEEKEDQEKEVGGISRGKEEETEEEKKKKKKKKKKKKKKKRYEEEEKEEEKDNK 59
           E    EKE   K        +EE+ E++KKK+ KK+KK+KK K+ +  E +  K  K
Sbjct: 131 ESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKK 187

5. This is a family of proteins conserved from yeasts to human. Subunit A34.5 of RNA polymerase I is a non-essential subunit which is thought to help Pol I overcome topological constraints imposed on ribosomal DNA during the process of transcription. Length = 193

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 42.2 bits (100), Expect = 4e-04
 Identities = 19/37 (51%), Positives = 26/37 (70%)

Query: 21  RGKEEETEEEKKKKKKKKKKKKKKKRYEEEEKEEEKD 57
             K E+  EE+KK+KKKK    KKK  EEEE++E+K+
Sbjct: 416 VEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKE 452

Length = 482

>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit RPA34

 Score = 40.9 bits (96), Expect = 4e-04
 Identities = 18/49 (36%), Positives = 33/49 (67%)

Query: 5   GGEEKEDQEKEVGGISRGKEEETEEEKKKKKKKKKKKKKKKRYEEEEKE 53
           G E +  +++    + +  E E EE+K+KKKKK+ KK+KK++ +++EK 
Sbjct: 129 GSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKM 177

5. This is a family of proteins conserved from yeasts to human. Subunit A34.5 of RNA polymerase I is a non-essential subunit which is thought to help Pol I overcome topological constraints imposed on ribosomal DNA during the process of transcription. Length = 193

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 41.8 bits (99), Expect = 6e-04
 Identities = 22/47 (46%), Positives = 32/47 (68%)

Query: 13  EKEVGGISRGKEEETEEEKKKKKKKKKKKKKKKRYEEEEKEEEKDNK 59
            K++  I    E++ EEEKK+KKKK    KKK+  EEEEKE++++ K
Sbjct: 409 TKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEK 455

Length = 482

>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3 subunit

 Score = 40.8 bits (96), Expect = 6e-04
 Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 6/54 (11%)

Query: 7  EEKEDQEKEVGGISRGKEEETEEEKKKKKKKKKKKKKKKRYEEEEKEEEKDNKL 60
          +E+ED+EKE       ++ +   + K KK  K K ++K++ + E++E+      
Sbjct: 38 DEEEDEEKE------EEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRELE 85

This is a family of proteins which are subunits of the eukaryotic translation initiation factor 3 (eIF3). In yeast it is called Hcr1. The Saccharomyces cerevisiae protein eIF3j (HCR1) has been shown to be required for processing of 20S pre-rRNA and binds to 18S rRNA and eIF3 subunits Rpg1p and Prt1p. Length = 242

>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)

 Score = 41.1 bits (96), Expect = 9e-04
 Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 21/73 (28%)

Query: 6   GEEKEDQEKEVGGISRGK---------------------EEETEEEKKKKKKKKKKKKKK 44
           G+E E+ E E GG  RGK                      E+ +EEK KKKKKK  K KK
Sbjct: 194 GDEDEETEGEKGGGGRGKDLKIKDLEGDDEDDGDESDKGGEDGDEEKSKKKKKKLAKNKK 253

Query: 45  KRYEEEEKEEEKD 57
           K  ++++ +   D
Sbjct: 254 KLDDDKKGKRGGD 266

Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) or RNA polymerase II-associating protein 74 (RAP74) is the large subunit of transcription factor IIF (TFIIF), which is essential for accurate initiation and stimulates elongation by RNA polymerase II. Length = 528

>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3 subunit

 Score = 40.0 bits (94), Expect = 0.001
 Identities = 19/56 (33%), Positives = 30/56 (53%)

Query: 6  GEEKEDQEKEVGGISRGKEEETEEEKKKKKKKKKKKKKKKRYEEEEKEEEKDNKLL 61
           E+++D  K+       +E+E E+ K   K K KK  K K  E+E+ + EK+ K L
Sbjct: 26 DEDEDDDVKDSWDEEEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGL 81

This is a family of proteins which are subunits of the eukaryotic translation initiation factor 3 (eIF3). In yeast it is called Hcr1. The Saccharomyces cerevisiae protein eIF3j (HCR1) has been shown to be required for processing of 20S pre-rRNA and binds to 18S rRNA and eIF3 subunits Rpg1p and Prt1p. Length = 242

>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1

 Score = 41.1 bits (97), Expect = 0.001
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 7/50 (14%)

Query: 8   EKEDQEKEVGGISRGKEEETEEEKKKKKKKKKKKKKKKRYEEEEKEEEKD 57
           E E++E E G +S         E+KK +KK++K +KK   EE EK   K 
Sbjct: 395 EGEEEEGENGNLS-------PAERKKLRKKQRKAEKKAEKEEAEKAAAKK 437

This domain family is found in eukaryotes, and is approximately 40 amino acids in length. The family is found in association with pfam07719, pfam00515. There is a single completely conserved residue L that may be functionally important. NARP1 is the mammalian homologue of a yeast N-terminal acetyltransferase that regulates entry into the G(0) phase of the cell cycle. Length = 516

>gnl|CDD|219901 pfam08555, DUF1754, Eukaryotic family of unknown function (DUF1754)

 Score = 37.8 bits (88), Expect = 0.001
 Identities = 17/29 (58%), Positives = 21/29 (72%)

Query: 31 KKKKKKKKKKKKKKKRYEEEEKEEEKDNK 59
          KKKKKKKKKK K K+    E++EEEK + 
Sbjct: 20 KKKKKKKKKKNKSKEEVVTEKEEEEKSSA 48

This is a eukaryotic protein family of unknown function. Length = 90

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 40.3 bits (94), Expect = 0.002
 Identities = 19/55 (34%), Positives = 36/55 (65%)

Query: 2   NEKGGEEKEDQEKEVGGISRGKEEETEEEKKKKKKKKKKKKKKKRYEEEEKEEEK 56
           NE G EE++++E+      + KE+  EE K +K K++ K+K+  + +E+EKE++ 
Sbjct: 100 NESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKV 154

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 39.9 bits (94), Expect = 0.002
 Identities = 20/58 (34%), Positives = 37/58 (63%), Gaps = 4/58 (6%)

Query: 1   MNEKGGEEKEDQEKEVGGISRGKEEETEEEKKKKKKKKKKKKKKKRYEEEEKEEEKDN 58
             E+  +EK+ +          KEEE EEEK+KK+++K++++++   E+EE+EE+K  
Sbjct: 422 KREEEKKEKKKKAFAGKK----KEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKKK 475

Length = 482

>gnl|CDD|222636 pfam14265, DUF4355, Domain of unknown function (DUF4355)

 Score = 38.0 bits (89), Expect = 0.002
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 3  EKGGEEKEDQEKEVGGISRGKEEETEEEKKKKKKKKKKKKKKKRYEEEEKEEEKD 57
          E   E+     KEV       +E+ + EKK+++KK + +K  K   EE+ E E +
Sbjct: 1  EPEEEKTFTD-KEVDKAI--AKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELE 52

This family of proteins is found in bacteria and viruses. Proteins in this family are typically between 180 and 214 amino acids in length. Length = 125

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 39.5 bits (93), Expect = 0.003
 Identities = 16/37 (43%), Positives = 27/37 (72%)

Query: 23  KEEETEEEKKKKKKKKKKKKKKKRYEEEEKEEEKDNK 59
           K+ E E+++KKKK    KKK+++  EE+EK+EE+  +
Sbjct: 421 KKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEE 457

Length = 482

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 39.1 bits (91), Expect = 0.004
 Identities = 17/55 (30%), Positives = 38/55 (69%)

Query: 2   NEKGGEEKEDQEKEVGGISRGKEEETEEEKKKKKKKKKKKKKKKRYEEEEKEEEK 56
             + G+E+E ++++V    + K+E+ +EE K +K K++ K+K+   E+E+++E+K
Sbjct: 99  KNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKK 153

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 39.1 bits (92), Expect = 0.004
 Identities = 15/57 (26%), Positives = 40/57 (70%), Gaps = 3/57 (5%)

Query: 3   EKGGEEKEDQEKEVGGISRGKEEETEEEKKKKKKKKKKKKKKKRYEEEEKEEEKDNK 59
           EK  +++E+++KE     +      ++E++++++K+KK+++K+  EEE +EE+++ +
Sbjct: 417 EKAEKKREEEKKE---KKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEE 470

Length = 482

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 39.1 bits (92), Expect = 0.004
 Identities = 20/55 (36%), Positives = 36/55 (65%)

Query: 5   GGEEKEDQEKEVGGISRGKEEETEEEKKKKKKKKKKKKKKKRYEEEEKEEEKDNK 59
           G ++   + K++   +  K EE ++EKKKK    KKK++++  E+E+KEEEK+ +
Sbjct: 404 GSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEE 458

Length = 482

>gnl|CDD|220237 pfam09428, DUF2011, Fungal protein of unknown function (DUF2011)

 Score = 37.3 bits (87), Expect = 0.004
 Identities = 12/32 (37%), Positives = 22/32 (68%)

Query: 21  RGKEEETEEEKKKKKKKKKKKKKKKRYEEEEK 52
           R +  +   EK+K+ +K ++KK K+R +E+EK
Sbjct: 99  RRERTKERAEKEKRTRKNREKKFKRRQKEKEK 130

This is a family of fungal proteins whose function is unknown. Length = 130

>gnl|CDD|218482 pfam05178, Kri1, KRI1-like family

 Score = 36.5 bits (85), Expect = 0.004
 Identities = 13/29 (44%), Positives = 20/29 (68%)

Query: 24 EEETEEEKKKKKKKKKKKKKKKRYEEEEK 52
          +E  EEEK +++++ K+ K  KR E EEK
Sbjct: 1  KERKEEEKAQREEELKRLKNLKREEIEEK 29

The yeast member of this family (Kri1p) is found to be required for 40S ribosome biogenesis in the nucleolus. Length = 99

>gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain

 Score = 38.1 bits (89), Expect = 0.004
 Identities = 18/58 (31%), Positives = 36/58 (62%), Gaps = 2/58 (3%)

Query: 1  MNEKGGEEKEDQEKEVGGISRGKEEETEEEKKKKKKKKKKKKKKKRYEEEEKEEEKDN 58
          +  K  +  + +EK+     R  EEE  EE+KK ++K++ ++K++   EEE+E++K+ 
Sbjct: 3  IGAK--KRAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEE 58

This is a family of proteins of approximately 300 residues, found in plants and vertebrates. They contain a highly conserved DDRGK motif. Length = 189

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	446
KOG3780|consensus	427		99.97
PF02752	136	Arrestin_C: Arrestin (or S-antigen), C-terminal do	99.84
KOG3865|consensus	402		99.62
PF00339	149	Arrestin_N: Arrestin (or S-antigen), N-terminal do	99.09
PF02752	136	Arrestin_C: Arrestin (or S-antigen), C-terminal do	98.64
KOG3780|consensus	427		98.51
PF00339	149	Arrestin_N: Arrestin (or S-antigen), N-terminal do	98.27
PF03643	275	Vps26: Vacuolar protein sorting-associated protein	98.06
PF08737	415	Rgp1: Rgp1; InterPro: IPR014848 Rgp1 forms heterod	97.85
KOG3865|consensus	402		97.27
PF13002	191	LDB19: Arrestin_N terminal like; InterPro: IPR0243	96.82
PF13002	191	LDB19: Arrestin_N terminal like; InterPro: IPR0243	96.51
KOG2717|consensus	313		96.42
PF07070	218	Spo0M: SpoOM protein; InterPro: IPR009776 This fam	95.33
PF03643	275	Vps26: Vacuolar protein sorting-associated protein	93.32
PF08737	415	Rgp1: Rgp1; InterPro: IPR014848 Rgp1 forms heterod	91.49
COG1470	513	Predicted membrane protein [Function unknown]	88.59
PF00927	107	Transglut_C: Transglutaminase family, C-terminal i	85.19
PF01835	99	A2M_N: MG2 domain; InterPro: IPR002890 The protein	83.99
COG3175	195	COX11 Cytochrome oxidase assembly factor [Posttran	82.41
PF10633	78	NPCBM_assoc: NPCBM-associated, NEW3 domain of alph	81.96
PRK05089	188	cytochrome C oxidase assembly protein; Provisional	80.91
PF07070	218	Spo0M: SpoOM protein; InterPro: IPR009776 This fam	80.87

>KOG3780|consensus

Probab=99.97  E-value=4e-29  Score=260.61  Aligned_cols=219  Identities=34%  Similarity=0.617  Sum_probs=171.1

Q ss_pred             ccCCeeeEeeeEeecCCCCCCccccCCCeeecCeEEEEeEEEecCCCCCceEEeecccEEEEEEEEEecCCCCCccceEE
Q psy10650         87 LLSPGIHSFPFKLGLPLGLPSTFLGQAPVLLSPGIHSFPFKLGLPLGLPSTFLGKHGWVQYFCKAALREPTGYTHKNQQV  166 (446)
Q Consensus        87 ~Lp~G~H~fpF~~~LP~~LPsSfeg~~g~~l~~G~~~~pf~f~LP~~lP~Sf~~~~g~IrY~i~~~i~~p~~~d~~~~~~  166 (446)
                      .|++|.|+|||.|.||.+||+||||.+                             |+|||.|+++++|+|..+....+.
T Consensus       101 ~l~~G~~~~pF~~~LP~~~P~Sfeg~~-----------------------------G~irY~vk~~idr~~~~~~~~~~~  151 (427)
T KOG3780|consen  101 VLPPGNYEFPFSFTLPLNLPPSFEGKF-----------------------------GHVRYFVKAEIDRPWKLNKKNRKP  151 (427)
T ss_pred             ecCCCceEEeEeccCCCCCCCceeeCC-----------------------------ceEEEEEEEEEecCCCCCccceee
Confidence            467777777777777777777777666                             567899999999999999999999


Q ss_pred             EEEEeccccCCCCCccceeeeccccccCCCCCCCCCCCceeEeEeEeeeeecCCcEEEEEEEcccccccCceEEEEEEEE
Q psy10650        167 FIIMSPIDLNLEPPILSVFIIMSPIDLNLEPPILSQPFDCEIEHKLGVACVSSGPVLCRVSLDRGGYVPGETIIINATVY  246 (446)
Q Consensus       167 ~~V~~~~dl~~~p~~~~~~~~~~P~~~~~~~p~~~~p~~~~~~k~~~~~c~~sG~v~l~v~lpr~gYvPGE~I~v~v~I~  246 (446)
                      |+|++.+|+|.+|.                   ...|+.+..++.++||||..|+|.+.+.||++||+|||.|.+.++|+
T Consensus       152 ~~V~~~~~ln~~p~-------------------~~~~~~~~~~k~~~~~~~~~g~v~~~~~ip~~~~~~ge~i~~~~~i~  212 (427)
T KOG3780|consen  152 FTVIETVDLNSSPS-------------------LLEPIISKASKKLGCVCFSSGPVSLELTIPKTGYVPGETIPVTLEIE  212 (427)
T ss_pred             EEEecccccccCcc-------------------ccCcchhhhhheeeEEEecCCcEEEEEEcccccCcCCccEEEEEEEe
Confidence            99999999986543                   34677888889999999999999999999999999999999999999


Q ss_pred             cCCcceeEeeeceeeeccccccccceeeeeEecCCceeEEEEeccceecCCCeEEEEEEEeeccceeeeeeEEEEEEEEE
Q psy10650        247 NRSKITVKSTKAALTEQPFDCEIEHKLGVACVSSGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALTETIQ  326 (446)
Q Consensus       247 N~S~k~ik~i~~~L~q~~~~~~~~~~~~~~c~~~G~v~l~~sl~r~gY~pGE~I~i~v~I~N~S~~~I~~i~v~Liq~v~  326 (446)
                      |.|++.++.+.+.|.|+..+..                   .      ..|         ...                 
T Consensus       213 n~ss~~~~~~~~~l~q~~~~~~-------------------~------~~~---------~~~-----------------  241 (427)
T KOG3780|consen  213 NKSSRTIKKVKAKLIQKISYLA-------------------F------SYG---------EHT-----------------  241 (427)
T ss_pred             cCCCCcceeeEEEEEEEEEEEe-------------------e------cCC---------ccc-----------------
Confidence            9999999888888887632211                   0      000         000                 


Q ss_pred             EEeccceeeeeEEEEeeeecCccCCCCccceeeeeEecCCCCCCCcCCCceEEEEEEEEEEEecCC-CCCCeEEEecEEE
Q psy10650        327 YLARNKVLESETRELASLTRGKIKPGERDDWTNQQLYVPPLPPTNLRGCHLIKIQYDVFFIVDPKS-IEKPVKLQLPIML  405 (446)
Q Consensus       327 y~a~~~~~~~~~~~V~~~~~~~V~~g~~~~~~~~~L~IP~i~PT~l~~~~iI~V~Y~L~V~v~~~~-~~~~l~v~lPIiI  405 (446)
                           ..+......+.....+.|.++....| ...|.||..+|++...|.+|+++|.|.|.+.+.+ +..++.+++||+|
T Consensus       242 -----~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~iP~~~Ps~~~~~~~i~v~y~l~v~~~~~~~~~~~~~l~~pi~i  315 (427)
T KOG3780|consen  242 -----KTKKSEKTLIKSRGSLEVAPRSEDKF-EKELRIPPVPPSILPDTPIIRVEYELKVTLKTSSLRHSELALELPIII  315 (427)
T ss_pred             -----cceeeeeEEeeeccccccCCCCcccc-ceEEEcCCCCCccCCCCceEEEEEEEEEEEecCcccccceeeeeceEE
Confidence                 00111112233334567888888877 8999999988876556999999999999999875 2578999999999


Q ss_pred             Eee-cC
Q psy10650        406 ATY-PF  410 (446)
Q Consensus       406 Gtv-Pl  410 (446)
                      |++ |+
T Consensus       316 gt~~P~  321 (427)
T KOG3780|consen  316 GTIPPL  321 (427)
T ss_pred             eccCcc
Confidence            999 53

>PF02752 Arrestin_C: Arrestin (or S-antigen), C-terminal domain; InterPro: IPR011022 G protein-coupled receptors are a large family of signalling molecules that respond to a wide variety of extracellular stimuli

Probab=99.84  E-value=3.9e-20  Score=161.60  Aligned_cols=130  Identities=34%  Similarity=0.561  Sum_probs=98.5

Q ss_pred             CCceeEEEEeccceecCCCeEEEEEEEeeccceeeeeeEEEEEEEEEEEeccc--eeeeeEEEEeeeecCccCCCCccce
Q psy10650        280 SGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALTETIQYLARNK--VLESETRELASLTRGKIKPGERDDW  357 (446)
Q Consensus       280 ~G~v~l~~sl~r~gY~pGE~I~i~v~I~N~S~~~I~~i~v~Liq~v~y~a~~~--~~~~~~~~V~~~~~~~V~~g~~~~~  357 (446)
                      +|.+++.+++++.+|.|||+|++++.|+|.|++.++.|+++|+|.++|.+++.  ......+.+++.....+.++....|
T Consensus         2 ~g~i~~~~~i~~~~~~~Ge~i~v~v~i~n~s~~~i~~I~v~L~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~   81 (136)
T PF02752_consen    2 SGKISLSISIPRTAYVPGETIPVNVEIDNQSKKKIKKIKVSLVERITYKAKGGKDESKSEKRVVAKSKNCGVDPGSSGSF   81 (136)
T ss_dssp             TEEEEEEEEES-SEEETT--EEEEEEEEE-SSSEEEEEEEEEEEEEEE-SS----S-EEEEEEEEEEECCEB-B-TTEEE
T ss_pred             CCEEEEEEEECCCEECCCCEEEEEEEEEECCCCEEEEEEEEEEEEEEEEEeeccccceEEEEEEEEEecCCccCCCCceE
Confidence            68999999999999999999999999999999999999999999999999875  3334556677766777877777778


Q ss_pred             e-eeeEecC-CCCCCCcCCCceEEEEEEEEEEEecCCCCCCeEEEecEEEEeec
Q psy10650        358 T-NQQLYVP-PLPPTNLRGCHLIKIQYDVFFIVDPKSIEKPVKLQLPIMLATYP  409 (446)
Q Consensus       358 ~-~~~L~IP-~i~PT~l~~~~iI~V~Y~L~V~v~~~~~~~~l~v~lPIiIGtvP  409 (446)
                      + ...|.|| +++||+...+++|+|+|.|+|.+.+.++..++.+++||+||++|
T Consensus        82 ~~~~~l~lP~~~~~s~~~~~~~i~v~Y~l~v~~~~~~~~~~~~~~~PI~I~~~p  135 (136)
T PF02752_consen   82 EFNIQLQLPSNLPPSTSTNSRLIQVEYQLEVTVKLSGCTSDLRLELPITIGSSP  135 (136)
T ss_dssp             EEEEEE-----B-----CGGGSEEEEEEEEEEEEEETTSEEEEEEEEEEEEB-S
T ss_pred             EEEEEEcCCCccCcccccCCcEEEEEEEEEEEEEECCceeEEEEEccEEEEecC
Confidence            4 4899999 58888645899999999999999999877899999999999988

The receptors relay the information encoded by the ligand through the activation of heterotrimeric G proteins and intracellular effector molecules. To ensure the appropriate regulation of the signalling cascade, it is vital to properly inactivate the receptor. This inactivation is achieved, in part, by the binding of a soluble protein, arrestin, which uncouples the receptor from the downstream G protein after the receptors are phosphorylated by G protein-coupled receptor kinases. In addition to the inactivation of G protein-coupled receptors, arrestins have also been implicated in the endocytosis of receptors and cross talk with other signalling pathways. Arrestin (retinal S-antigen) is a major protein of the retinal rod outer segments. It interacts with photo-activated phosphorylated rhodopsin, inhibiting or 'arresting' its ability to interact with transducin []. The protein binds calcium, and shows similarity in its C terminus to alpha-transducin and other purine nucleotide-binding proteins. In mammals, arrestin is associated with autoimmune uveitis. Arrestins comprise a family of closely-related proteins that includes beta-arrestin-1 and -2, which regulate the function of beta-adrenergic receptors by binding to their phosphorylated forms, impairing their capacity to activate G(S) proteins; Cone photoreceptors C-arrestin (arrestin-X) [], which could bind to phosphorylated red/green opsins; and Drosophila phosrestins I and II, which undergo light-induced phosphorylation, and probably play a role in photoreceptor transduction [, , ]. The crystal structure of bovine retinal arrestin comprises two domains of antiparallel beta-sheets connected through a hinge region and one short alpha-helix on the back of the amino-terminal fold []. The binding region for phosphorylated light-activated rhodopsin is located at the N-terminal domain, as indicated by the docking of the photoreceptor to the three-dimensional structure of arrestin. The C-terminal domain consists of an immunoglobulin-like beta-sandwich structure. This entry represents proteins with immunoglobulin-like domains that are similar to those found in arrestin.; PDB: 1SUJ_A 3UGX_A 1CF1_B 1AYR_A 3UGU_A 3P2D_B 1ZSH_A 2WTR_B 3GC3_A 1G4R_A ....

>KOG3865|consensus

Probab=99.62  E-value=2.2e-14  Score=139.52  Aligned_cols=121  Identities=31%  Similarity=0.510  Sum_probs=87.1

Q ss_pred             eEEEEeEEEecCCCCCceEE--------eecccEEEEEEEEEecCCCC-CccceEEEEEEeccccCCCCCccceeeeccc
Q psy10650        120 GIHSFPFKLGLPLGLPSTFL--------GKHGWVQYFCKAALREPTGY-THKNQQVFIIMSPIDLNLEPPILSVFIIMSP  190 (446)
Q Consensus       120 G~~~~pf~f~LP~~lP~Sf~--------~~~g~IrY~i~~~i~~p~~~-d~~~~~~~~V~~~~dl~~~p~~~~~~~~~~P  190 (446)
                      |.+.|||.|.+|.++|+|+.        |+.+-|.|.+++-+.....- ..+....--+++.+..             ||
T Consensus       107 G~nAyPF~f~~pp~~P~SVtLQp~p~D~gKpcGVdyevkaF~~~s~edk~hKr~sVrL~IRKvqy-------------AP  173 (402)
T KOG3865|consen  107 GSNAYPFTFEFPPNLPCSVTLQPGPEDTGKPCGVDYEVKAFVADSEEDKIHKRNSVRLVIRKVQY-------------AP  173 (402)
T ss_pred             CCCCCceEEeCCCCCCceEEeccCCccCCCcccceEEEEEEecCCcccccccccceeeeeeeeee-------------cC
Confidence            88889999999999999883        55678999999987654211 1111111123344322             33


Q ss_pred             cccCCCCCCCCCCCceeEeEeEeeeeecCCcEEEEEEEcccccccCceEEEEEEEEcCCcceeEeeeceeeec
Q psy10650        191 IDLNLEPPILSQPFDCEIEHKLGVACVSSGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALTEQ  263 (446)
Q Consensus       191 ~~~~~~~p~~~~p~~~~~~k~~~~~c~~sG~v~l~v~lpr~gYvPGE~I~v~v~I~N~S~k~ik~i~~~L~q~  263 (446)
                      ...+.      +| +.++++.   |.++.|+++|+++|||.-|..||.|+|+|.|.|+|++.|+.|++.+.|.
T Consensus       174 ~~~Gp------qP-~~~v~k~---FlmS~~~lhLevsLDkEiYyHGE~isvnV~V~NNsnKtVKkIK~~V~Q~  236 (402)
T KOG3865|consen  174 LEPGP------QP-SAEVSKQ---FLMSDGPLHLEVSLDKEIYYHGEPISVNVHVTNNSNKTVKKIKISVRQV  236 (402)
T ss_pred             CCCCC------Cc-hhHhhHh---hccCCCceEEEEEecchheecCCceeEEEEEecCCcceeeeeEEEeEee
Confidence            22221      22 2233444   4789999999999999999999999999999999999999999999885

>PF00339 Arrestin_N: Arrestin (or S-antigen), N-terminal domain; InterPro: IPR011021 G protein-coupled receptors are a large family of signalling molecules that respond to a wide variety of extracellular stimuli

Probab=99.09  E-value=9.5e-11  Score=103.99  Aligned_cols=63  Identities=46%  Similarity=0.835  Sum_probs=44.2

Q ss_pred             CeeecCeEEEEeEEEecCCCCCceEEeecccEEEEEEEEEecCCCCCccceEEEEEEeccccC
Q psy10650        114 PVLLSPGIHSFPFKLGLPLGLPSTFLGKHGWVQYFCKAALREPTGYTHKNQQVFIIMSPIDLN  176 (446)
Q Consensus       114 g~~l~~G~~~~pf~f~LP~~lP~Sf~~~~g~IrY~i~~~i~~p~~~d~~~~~~~~V~~~~dl~  176 (446)
                      +..|++|.|.|||+|.||.++|+||++.+|+|+|.++|.+++++..+....+.|+|++++|+|
T Consensus        87 ~~~l~~G~~~fpF~f~LP~~lP~S~~~~~g~I~Y~l~a~l~~~~~~~~~~~~~~~v~~~id~n  149 (149)
T PF00339_consen   87 PNILPPGEYEFPFEFQLPSNLPSSFEGSHGSIRYKLKATLDRPGKKDHKAKREFTVVEPIDLN  149 (149)
T ss_dssp             -----C-TTEEEEEE---TTS--SEEEE-SEEEEEEEEEESSTTSE--CGGEEEEEEEEEEB-
T ss_pred             eecccCCCEEEEEEEECCCCCCceEeccCcCEEEEEEEEEECCCCCCcEEEEEEEEECcccCC
Confidence            456777888888888888888888888888999999999999999898899999999999986

The receptors relay the information encoded by the ligand through the activation of heterotrimeric G proteins and intracellular effector molecules. To ensure the appropriate regulation of the signalling cascade, it is vital to properly inactivate the receptor. This inactivation is achieved, in part, by the binding of a soluble protein, arrestin, which uncouples the receptor from the downstream G protein after the receptors are phosphorylated by G protein-coupled receptor kinases. In addition to the inactivation of G protein-coupled receptors, arrestins have also been implicated in the endocytosis of receptors and cross talk with other signalling pathways. Arrestin (retinal S-antigen) is a major protein of the retinal rod outer segments. It interacts with photo-activated phosphorylated rhodopsin, inhibiting or 'arresting' its ability to interact with transducin []. The protein binds calcium, and shows similarity in its C terminus to alpha-transducin and other purine nucleotide-binding proteins. In mammals, arrestin is associated with autoimmune uveitis. Arrestins comprise a family of closely-related proteins that includes beta-arrestin-1 and -2, which regulate the function of beta-adrenergic receptors by binding to their phosphorylated forms, impairing their capacity to activate G(S) proteins; Cone photoreceptors C-arrestin (arrestin-X) [], which could bind to phosphorylated red/green opsins; and Drosophila phosrestins I and II, which undergo light-induced phosphorylation, and probably play a role in photoreceptor transduction [, , ]. The crystal structure of bovine retinal arrestin comprises two domains of antiparallel beta-sheets connected through a hinge region and one short alpha-helix on the back of the amino-terminal fold []. The binding region for phosphorylated light-activated rhodopsin is located at the N-terminal domain, as indicated by the docking of the photoreceptor to the three-dimensional structure of arrestin. The N-terminal domain consists of an immunoglobulin-like beta-sandwich structure. This entry represents proteins with immunoglobulin-like domains that are similar to those found in arrestin.; PDB: 1SUJ_A 3UGX_A 1CF1_B 1AYR_A 3UGU_A 3P2D_B 1ZSH_A 2WTR_B 3GC3_A 1G4R_A ....

>PF02752 Arrestin_C: Arrestin (or S-antigen), C-terminal domain; InterPro: IPR011022 G protein-coupled receptors are a large family of signalling molecules that respond to a wide variety of extracellular stimuli

Probab=98.64  E-value=4.5e-08  Score=85.15  Aligned_cols=50  Identities=38%  Similarity=0.600  Sum_probs=41.5

Q ss_pred             cCCcEEEEEEEcccccccCceEEEEEEEEcCCcceeEeeeceeeec-cccc
Q psy10650        218 SSGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALTEQ-PFDC  267 (446)
Q Consensus       218 ~sG~v~l~v~lpr~gYvPGE~I~v~v~I~N~S~k~ik~i~~~L~q~-~~~~  267 (446)
                      |+|+|++++++||+||+|||+|++.++|+|.|++.|+.|.+.|.|. +|.+
T Consensus         1 w~g~i~~~~~i~~~~~~~Ge~i~v~v~i~n~s~~~i~~I~v~L~~~~~~~~   51 (136)
T PF02752_consen    1 WSGKISLSISIPRTAYVPGETIPVNVEIDNQSKKKIKKIKVSLVERITYKA   51 (136)
T ss_dssp             -TEEEEEEEEES-SEEETT--EEEEEEEEE-SSSEEEEEEEEEEEEEEE-S
T ss_pred             CCCEEEEEEEECCCEECCCCEEEEEEEEEECCCCEEEEEEEEEEEEEEEEE
Confidence            5899999999999999999999999999999999999999999997 4433

The receptors relay the information encoded by the ligand through the activation of heterotrimeric G proteins and intracellular effector molecules. To ensure the appropriate regulation of the signalling cascade, it is vital to properly inactivate the receptor. This inactivation is achieved, in part, by the binding of a soluble protein, arrestin, which uncouples the receptor from the downstream G protein after the receptors are phosphorylated by G protein-coupled receptor kinases. In addition to the inactivation of G protein-coupled receptors, arrestins have also been implicated in the endocytosis of receptors and cross talk with other signalling pathways. Arrestin (retinal S-antigen) is a major protein of the retinal rod outer segments. It interacts with photo-activated phosphorylated rhodopsin, inhibiting or 'arresting' its ability to interact with transducin []. The protein binds calcium, and shows similarity in its C terminus to alpha-transducin and other purine nucleotide-binding proteins. In mammals, arrestin is associated with autoimmune uveitis. Arrestins comprise a family of closely-related proteins that includes beta-arrestin-1 and -2, which regulate the function of beta-adrenergic receptors by binding to their phosphorylated forms, impairing their capacity to activate G(S) proteins; Cone photoreceptors C-arrestin (arrestin-X) [], which could bind to phosphorylated red/green opsins; and Drosophila phosrestins I and II, which undergo light-induced phosphorylation, and probably play a role in photoreceptor transduction [, , ]. The crystal structure of bovine retinal arrestin comprises two domains of antiparallel beta-sheets connected through a hinge region and one short alpha-helix on the back of the amino-terminal fold []. The binding region for phosphorylated light-activated rhodopsin is located at the N-terminal domain, as indicated by the docking of the photoreceptor to the three-dimensional structure of arrestin. The C-terminal domain consists of an immunoglobulin-like beta-sandwich structure. This entry represents proteins with immunoglobulin-like domains that are similar to those found in arrestin.; PDB: 1SUJ_A 3UGX_A 1CF1_B 1AYR_A 3UGU_A 3P2D_B 1ZSH_A 2WTR_B 3GC3_A 1G4R_A ....

>KOG3780|consensus

Probab=98.51  E-value=6.1e-07  Score=93.86  Aligned_cols=69  Identities=41%  Similarity=0.621  Sum_probs=62.3

Q ss_pred             ccccccceeeeeEecCCceeEEEEeccceecCCCeEEEEEEEeeccceeeeeeEEEEEEEEEEEeccce
Q psy10650        265 FDCEIEHKLGVACVSSGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALTETIQYLARNKV  333 (446)
Q Consensus       265 ~~~~~~~~~~~~c~~~G~v~l~~sl~r~gY~pGE~I~i~v~I~N~S~~~I~~i~v~Liq~v~y~a~~~~  333 (446)
                      .....++.++|+|+..|.+.+.+++++.||++||.|.+.+.|+|.+++.+..+.++|.|.+.|.+....
T Consensus       170 ~~~~~~k~~~~~~~~~g~v~~~~~ip~~~~~~ge~i~~~~~i~n~ss~~~~~~~~~l~q~~~~~~~~~~  238 (427)
T KOG3780|consen  170 IISKASKKLGCVCFSSGPVSLELTIPKTGYVPGETIPVTLEIENKSSRTIKKVKAKLIQKISYLAFSYG  238 (427)
T ss_pred             chhhhhheeeEEEecCCcEEEEEEcccccCcCCccEEEEEEEecCCCCcceeeEEEEEEEEEEEeecCC
Confidence            344556678889999999999999999999999999999999999999999999999999999987543

>PF00339 Arrestin_N: Arrestin (or S-antigen), N-terminal domain; InterPro: IPR011021 G protein-coupled receptors are a large family of signalling molecules that respond to a wide variety of extracellular stimuli

Probab=98.27  E-value=1.2e-06  Score=77.58  Aligned_cols=40  Identities=43%  Similarity=0.792  Sum_probs=26.0

Q ss_pred             CcccCCeeeEeeeEeecCCCCCCccccCCCeeecCeEEEEeEEEec
Q psy10650         85 PVLLSPGIHSFPFKLGLPLGLPSTFLGQAPVLLSPGIHSFPFKLGL  130 (446)
Q Consensus        85 ~~~Lp~G~H~fpF~~~LP~~LPsSfeg~~g~~l~~G~~~~pf~f~L  130 (446)
                      ...|++|.|.|||+|+||.+||+||+|.+      |.+.|-.++.|
T Consensus        87 ~~~l~~G~~~fpF~f~LP~~lP~S~~~~~------g~I~Y~l~a~l  126 (149)
T PF00339_consen   87 PNILPPGEYEFPFEFQLPSNLPSSFEGSH------GSIRYKLKATL  126 (149)
T ss_dssp             -----C-TTEEEEEE---TTS--SEEEE-------SEEEEEEEEEE
T ss_pred             eecccCCCEEEEEEEECCCCCCceEeccC------cCEEEEEEEEE
Confidence            56799999999999999999999999998      68888888888

The receptors relay the information encoded by the ligand through the activation of heterotrimeric G proteins and intracellular effector molecules. To ensure the appropriate regulation of the signalling cascade, it is vital to properly inactivate the receptor. This inactivation is achieved, in part, by the binding of a soluble protein, arrestin, which uncouples the receptor from the downstream G protein after the receptors are phosphorylated by G protein-coupled receptor kinases. In addition to the inactivation of G protein-coupled receptors, arrestins have also been implicated in the endocytosis of receptors and cross talk with other signalling pathways. Arrestin (retinal S-antigen) is a major protein of the retinal rod outer segments. It interacts with photo-activated phosphorylated rhodopsin, inhibiting or 'arresting' its ability to interact with transducin []. The protein binds calcium, and shows similarity in its C terminus to alpha-transducin and other purine nucleotide-binding proteins. In mammals, arrestin is associated with autoimmune uveitis. Arrestins comprise a family of closely-related proteins that includes beta-arrestin-1 and -2, which regulate the function of beta-adrenergic receptors by binding to their phosphorylated forms, impairing their capacity to activate G(S) proteins; Cone photoreceptors C-arrestin (arrestin-X) [], which could bind to phosphorylated red/green opsins; and Drosophila phosrestins I and II, which undergo light-induced phosphorylation, and probably play a role in photoreceptor transduction [, , ]. The crystal structure of bovine retinal arrestin comprises two domains of antiparallel beta-sheets connected through a hinge region and one short alpha-helix on the back of the amino-terminal fold []. The binding region for phosphorylated light-activated rhodopsin is located at the N-terminal domain, as indicated by the docking of the photoreceptor to the three-dimensional structure of arrestin. The N-terminal domain consists of an immunoglobulin-like beta-sandwich structure. This entry represents proteins with immunoglobulin-like domains that are similar to those found in arrestin.; PDB: 1SUJ_A 3UGX_A 1CF1_B 1AYR_A 3UGU_A 3P2D_B 1ZSH_A 2WTR_B 3GC3_A 1G4R_A ....

>PF03643 Vps26: Vacuolar protein sorting-associated protein 26 ; InterPro: IPR005377 The movement of lipid and protein components between intracellular organelles requires the regulated interactions of many molecules

Probab=98.06  E-value=0.00084  Score=66.68  Aligned_cols=177  Identities=19%  Similarity=0.277  Sum_probs=88.7

Q ss_pred             eecCeEEEEeEEEecCCCCCceEEeecccEEEEEEEEEecCCCCCccceEEEEEEeccccCCCCCccceeeeccccccCC
Q psy10650        116 LLSPGIHSFPFKLGLPLGLPSTFLGKHGWVQYFCKAALREPTGYTHKNQQVFIIMSPIDLNLEPPILSVFIIMSPIDLNL  195 (446)
Q Consensus       116 ~l~~G~~~~pf~f~LP~~lP~Sf~~~~g~IrY~i~~~i~~p~~~d~~~~~~~~V~~~~dl~~~p~~~~~~~~~~P~~~~~  195 (446)
                      .|+.|.. |||.|.+-..--.||.|.+-.|+|.+++++.|+. .+......|-|...   ...                 
T Consensus        92 ~l~~~~t-~pFeF~~~~k~yETY~G~~v~i~Y~lrv~v~R~~-~~i~k~~ef~V~~~---~~~-----------------  149 (275)
T PF03643_consen   92 KLPEGKT-FPFEFPLVEKPYETYHGVNVNIRYFLRVTVKRSY-KDISKEQEFWVQNF---SIT-----------------  149 (275)
T ss_dssp             EE-S-EE-EEEEE-SB---S--EE-SSEEEEEEEEEEE--SS-S-EEEEEEEEEE-E---B-------------------
T ss_pred             ccCCCcE-EeeEeCCCCCCCccEeeeEEEEEEEEEEEEEccC-CCcceEEEEEEEec---cCC-----------------
Confidence            4555666 9999987544456788888899999999999998 56666666665522   110                 


Q ss_pred             CCCCCCCCCceeEeEeEeeeeecCCcEEEEEEEcccccccCceEEEEEEEEcCCcceeEeeeceeeeccccccccceeee
Q psy10650        196 EPPILSQPFDCEIEHKLGVACVSSGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALTEQPFDCEIEHKLGV  275 (446)
Q Consensus       196 ~~p~~~~p~~~~~~k~~~~~c~~sG~v~l~v~lpr~gYvPGE~I~v~v~I~N~S~k~ik~i~~~L~q~~~~~~~~~~~~~  275 (446)
                        |...+|+                  .+++.+                                               
T Consensus       150 --p~~~~~i------------------k~evgi-----------------------------------------------  162 (275)
T PF03643_consen  150 --PESNQPI------------------KMEVGI-----------------------------------------------  162 (275)
T ss_dssp             --------E------------------EEEECE-----------------------------------------------
T ss_pred             --CCCCCCc------------------ccccCC-----------------------------------------------
Confidence              1001121                  111100                                               


Q ss_pred             eEecCCceeEEEEeccceecCCCeEEEEEEEeeccceeeeeeEEEEEEEEEEEeccceeeeeEEEEee--eecCccCCCC
Q psy10650        276 ACVSSGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALTETIQYLARNKVLESETRELAS--LTRGKIKPGE  353 (446)
Q Consensus       276 ~c~~~G~v~l~~sl~r~gY~pGE~I~i~v~I~N~S~~~I~~i~v~Liq~v~y~a~~~~~~~~~~~V~~--~~~~~V~~g~  353 (446)
                          .+-+++...++++.|.-.|.|.=.+.+. ..+..|+.+++.|+|.-++.+.... ..+..+|..  ++.+.+-+|.
T Consensus       163 ----e~~lhief~~~k~~~~l~d~i~G~i~f~-lv~~kIk~~elqLiR~Et~g~~~~~-~~e~t~i~~~eImDG~p~rge  236 (275)
T PF03643_consen  163 ----EDCLHIEFEYDKSKYHLKDVITGKIYFL-LVRIKIKSMELQLIRVETCGCGENY-AKESTEIQKIEIMDGAPCRGE  236 (275)
T ss_dssp             ----TTTEEEEEEES-SEEETT-EEEEEEEEE-EESS-EEEEEEEEEEEEEECECCCE-EEEEEEEEEEEEESS---TT-
T ss_pred             ----CccEEEEEEEcccceECCCCEEEEEEEE-EEeecceEEEEEEEEEEEEecCCcc-cccceEEEEEEeecCCccccc
Confidence                1123444444555555555433222221 2236789999999999988664332 234445544  4455555554


Q ss_pred             ccceeeeeEecCC--CCCCCcCCCceEEEEEEEEEEEec
Q psy10650        354 RDDWTNQQLYVPP--LPPTNLRGCHLIKIQYDVFFIVDP  390 (446)
Q Consensus       354 ~~~~~~~~L~IP~--i~PT~l~~~~iI~V~Y~L~V~v~~  390 (446)
                      .-   -..|-+|.  +.||...-...++|+|+|.+.+..
T Consensus       237 ~I---Pirl~l~~l~l~Pt~~~~~~~FsV~y~lnlvlid  272 (275)
T PF03643_consen  237 SI---PIRLFLPRLFLCPTYKNVNNKFSVEYELNLVLID  272 (275)
T ss_dssp             EE---EEEEECCCT-----EEEECTTEEEEEEEEEEEEE
T ss_pred             ee---eEEEEcCCcccCCcchhcCCcEEEEEEEEEEEEc
Confidence            32   56677788  788852225679999999997743

Vacuolar protein sorting-associated protein (Vps)5 is a yeast protein that is a subunit of a large multimeric complex, termed the retromer complex, involved in retrograde transport of proteins from endosomes to the trans-Golgi network. Sorting nexin (SNX) 1 and SNX2 are its mammalian orthologs []. To carry out its biological functions, Vps5 forms the retromer complex with at least four other proteins: Vps17, Vps26, Vps29, and Vps35 []. This family of Vps26-proteins also contains Down syndrome critical region 3/A.; GO: 0007034 vacuolar transport, 0030904 retromer complex; PDB: 3LHA_A 3LH9_A 2R51_A 3LH8_B 2FAU_A.

>PF08737 Rgp1: Rgp1; InterPro: IPR014848 Rgp1 forms heterodimer with Ric1 (IPR009771 from INTERPRO) which associates with Golgi membranes and functions as a guanyl-nucleotide exchange factor []

Probab=97.85  E-value=0.0025  Score=66.97  Aligned_cols=108  Identities=18%  Similarity=0.169  Sum_probs=73.8

Q ss_pred             ecCCceeEEEEeccceecCCCeEEEEEEEeeccceeeeeeEEEEEEEEEEEeccc----e--eeeeEEEEeeeecCccCC
Q psy10650        278 VSSGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALTETIQYLARNK----V--LESETRELASLTRGKIKP  351 (446)
Q Consensus       278 ~~~G~v~l~~sl~r~gY~pGE~I~i~v~I~N~S~~~I~~i~v~Liq~v~y~a~~~----~--~~~~~~~V~~~~~~~V~~  351 (446)
                      ...|..-+.+++.|.+|..||.|...+.+.+.....+-.+.+.|.-.-.+...-.    .  ....++.+++..  .+-.
T Consensus       299 ~~n~~~va~~~LsK~~yrlGE~I~g~idf~~~~~~~c~~v~~~LEs~E~v~~~~~~~~~~~~~~~~~~~~~~~~--e~~~  376 (415)
T PF08737_consen  299 RRNGQRVARLSLSKPAYRLGEDIVGTIDFNDASTIPCYQVSASLESEETVNPSYAVRSSAKINRVTRKVHAEHH--EICL  376 (415)
T ss_pred             EECCeEEEEEEecCCCcccCCeEEEEEEcCCCCcceeEEEEEEEEEEEEeCchhcccccccccccEEEEEEEEe--eeec
Confidence            3477888899999999999999999999988775677788888887666533221    1  111222233322  1212


Q ss_pred             CCccceeeeeEecCC-CCCCCcCCCceEEEEEEEEEEEec
Q psy10650        352 GERDDWTNQQLYVPP-LPPTNLRGCHLIKIQYDVFFIVDP  390 (446)
Q Consensus       352 g~~~~~~~~~L~IP~-i~PT~l~~~~iI~V~Y~L~V~v~~  390 (446)
                      +..... ...|.||. .+|++  .+.++++.|.|++.+.+
T Consensus       377 ~~~~~~-~f~l~IP~~~tp~F--~T~~v~lkW~LrfeFv~  413 (415)
T PF08737_consen  377 DSRSRT-SFSLPIPLSATPQF--QTSGVSLKWRLRFEFVT  413 (415)
T ss_pred             CCcceE-EEEeeCCCCCCCce--EeCCEEEEEEEEEEEEe
Confidence            222122 67899999 56665  68899999999998765

>KOG3865|consensus

Probab=97.27  E-value=0.00052  Score=67.97  Aligned_cols=125  Identities=26%  Similarity=0.305  Sum_probs=91.6

Q ss_pred             EecCCceeEEEEeccceecCCCeEEEEEEEeeccceeeeeeEEEEEEEEEEEe--ccceeeeeEEEEeeee---cCccCC
Q psy10650        277 CVSSGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALTETIQYLA--RNKVLESETRELASLT---RGKIKP  351 (446)
Q Consensus       277 c~~~G~v~l~~sl~r~gY~pGE~I~i~v~I~N~S~~~I~~i~v~Liq~v~y~a--~~~~~~~~~~~V~~~~---~~~V~~  351 (446)
                      ..+.|+++|.+++|+.-|..||.|.+++.|.|+|+++|+.|++.+.|......  ....    .+.|+.++   .+.|.|
T Consensus       189 lmS~~~lhLevsLDkEiYyHGE~isvnV~V~NNsnKtVKkIK~~V~Q~adi~Lfs~aqy----~~~VA~~E~~eGc~v~P  264 (402)
T KOG3865|consen  189 LMSDGPLHLEVSLDKEIYYHGEPISVNVHVTNNSNKTVKKIKISVRQVADICLFSTAQY----KKPVAMEETDEGCPVAP  264 (402)
T ss_pred             ccCCCceEEEEEecchheecCCceeEEEEEecCCcceeeeeEEEeEeeceEEEEecccc----cceeeeeecccCCccCC
Confidence            46799999999999999999999999999999999999999999999654432  2222    23455443   568999


Q ss_pred             CCccceeeeeEecCCC----------------------CCCC-cCC---Cc--eEEEEEEEEEEEecCC-CCCCeEEEec
Q psy10650        352 GERDDWTNQQLYVPPL----------------------PPTN-LRG---CH--LIKIQYDVFFIVDPKS-IEKPVKLQLP  402 (446)
Q Consensus       352 g~~~~~~~~~L~IP~i----------------------~PT~-l~~---~~--iI~V~Y~L~V~v~~~~-~~~~l~v~lP  402 (446)
                      |++.+-  ..-.+|-+                      +.|+ ++.   ..  =|-|+|.++|.+.+++ +..++.+++|
T Consensus       265 gstl~K--vf~l~PllanN~dkrGlALDG~lKhEDtnLASSTii~~~~~re~lGI~VsY~VkVkL~vs~ll~ge~~~ElP  342 (402)
T KOG3865|consen  265 GSTLSK--VFTLTPLLANNKDKRGLALDGKLKHEDTNLASSTIIREGADREALGILVSYKVKVKLVVSRLLGGEVAAELP  342 (402)
T ss_pred             CCeeee--eEEechhhhcCcccccccccccccccccccchhheecCCCCcceeEEEEEEEEEEEEEEecccCCceeeecc
Confidence            987542  33334422                      1111 111   01  1789999999998884 6789999999


Q ss_pred             EEEEe
Q psy10650        403 IMLAT  407 (446)
Q Consensus       403 IiIGt  407 (446)
                      +++..
T Consensus       343 F~Lmh  347 (402)
T KOG3865|consen  343 FTLMH  347 (402)
T ss_pred             eEEec
Confidence            98765

>PF13002 LDB19: Arrestin_N terminal like; InterPro: IPR024391 This entry represents a predicted Ig-like beta sandwich domain found towards the N terminus of protein LDB19 []

Probab=96.82  E-value=0.017  Score=54.13  Aligned_cols=26  Identities=38%  Similarity=0.728  Sum_probs=19.8

Q ss_pred             CcccCCeeeEeeeEeecCCCCCCccc
Q psy10650         85 PVLLSPGIHSFPFKLGLPLGLPSTFL  110 (446)
Q Consensus        85 ~~~Lp~G~H~fpF~~~LP~~LPsSfe  110 (446)
                      +..|..|.|.|||++-||-+||.|..
T Consensus        44 ~t~l~~G~h~fPFS~LiPG~LPaS~~   69 (191)
T PF13002_consen   44 PTTLTKGSHAFPFSYLIPGHLPASMD   69 (191)
T ss_pred             ccccCCCcccCCeeEECCCCCccccc
Confidence            44578888888888888888887764

It is also found in other sequences and is related to the arrestin N-terminal fold [].

>PF13002 LDB19: Arrestin_N terminal like; InterPro: IPR024391 This entry represents a predicted Ig-like beta sandwich domain found towards the N terminus of protein LDB19 []

Probab=96.51  E-value=0.016  Score=54.29  Aligned_cols=111  Identities=19%  Similarity=0.229  Sum_probs=69.7

Q ss_pred             eeecCeEEEEeEEEecCCCCCceEE---eecccEEEEEEEEEecC--CC-CCccceEEEEEEeccccCCCCCccceeeec
Q psy10650        115 VLLSPGIHSFPFKLGLPLGLPSTFL---GKHGWVQYFCKAALREP--TG-YTHKNQQVFIIMSPIDLNLEPPILSVFIIM  188 (446)
Q Consensus       115 ~~l~~G~~~~pf~f~LP~~lP~Sf~---~~~g~IrY~i~~~i~~p--~~-~d~~~~~~~~V~~~~dl~~~p~~~~~~~~~  188 (446)
                      ..|..|.|.|||++-||..+|.|..   +..+.|.|.+.|++..-  .. ........+.+..++++...       .. 
T Consensus        45 t~l~~G~h~fPFS~LiPG~LPaS~~lgs~~l~~I~Yel~A~a~~~~~~~~~~~~~~~~~~~~~pl~V~Rs-------i~-  116 (191)
T PF13002_consen   45 TTLTKGSHAFPFSYLIPGHLPASMDLGSTPLVSIKYELKAEATYKDPRRGSSSSKPRVLKLKRPLPVKRS-------IL-  116 (191)
T ss_pred             cccCCCcccCCeeEECCCCCccccccCCCCcEEEEEEEEEEEEEccCccccCCCcceeEEEeeeEEEEEe-------cC-
Confidence            3567899999999999999999998   77899999999998762  11 00111122333334433320       00 


Q ss_pred             cccccCCCCCCCCCCCceeEeEeEeeeeecCCcEEEEEEEcccccccCceEEEEEEEEcCCcce
Q psy10650        189 SPIDLNLEPPILSQPFDCEIEHKLGVACVSSGPVLCRVSLDRGGYVPGETIIINATVYNRSKIT  252 (446)
Q Consensus       189 ~P~~~~~~~p~~~~p~~~~~~k~~~~~c~~sG~v~l~v~lpr~gYvPGE~I~v~v~I~N~S~k~  252 (446)
                       |      .|.    .     ..+.  .|.--.|...+.+|--.| |--+.+|.+.++|-++.+
T Consensus       117 -~------gpd----~-----~S~R--vFPPT~l~a~a~lP~VI~-P~gtfpvel~LdGv~~~~  161 (191)
T PF13002_consen  117 -P------GPD----K-----NSLR--VFPPTNLTASAVLPNVIH-PKGTFPVELRLDGVVSKD  161 (191)
T ss_pred             -C------CCC----c-----ccEE--ecCCCCcEEEEEcCCeeC-CCCcccEEEEEecccCCC
Confidence             0      010    0     0111  345566788888886665 555689999999976544

It is also found in other sequences and is related to the arrestin N-terminal fold [].

>KOG2717|consensus

Probab=96.42  E-value=0.12  Score=49.78  Aligned_cols=105  Identities=18%  Similarity=0.132  Sum_probs=64.9

Q ss_pred             CCceeEEEEeccceecCCCeEEEEEEEeeccceeeeeeEEEEEEEEEEEeccceeeeeEEEEeeeecCccCCCCc---cc
Q psy10650        280 SGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALTETIQYLARNKVLESETRELASLTRGKIKPGER---DD  356 (446)
Q Consensus       280 ~G~v~l~~sl~r~gY~pGE~I~i~v~I~N~S~~~I~~i~v~Liq~v~y~a~~~~~~~~~~~V~~~~~~~V~~g~~---~~  356 (446)
                      .+...++-.+|++.++..+.+.=.+.++. |...|+.|++.|+|.-+........+ +...|.   ...|+.|+-   .+
T Consensus       176 ~p~FlvtG~Ld~t~c~~t~PltGeltVe~-seaaI~Sie~qLvRVEtcgc~Egy~~-dateIQ---siQIADGdVcr~l~  250 (313)
T KOG2717|consen  176 TPGFLVTGKLDATQCSLTDPLTGELTVEA-SEAAITSIEIQLVRVETCGCGEGYVT-DATEIQ---SIQIADGDVCRNLT  250 (313)
T ss_pred             CCceEEEeeecceeeEecCCccceEEEEe-eccceeEEEEEEEEEEEeecccceec-ccceee---eEEeccCccccCCc
Confidence            44556677778888877776655555554 55689999999999887766543321 111222   223434331   22


Q ss_pred             eeeeeEecCC--CCCCCcCCCceEEEEEEEEEEEecCC
Q psy10650        357 WTNQQLYVPP--LPPTNLRGCHLIKIQYDVFFIVDPKS  392 (446)
Q Consensus       357 ~~~~~L~IP~--i~PT~l~~~~iI~V~Y~L~V~v~~~~  392 (446)
                      + ..-+.+|.  +.||.  ...-++|++.+.+.+.+..
T Consensus       251 l-PIymvlPRLftCPtl--~t~nFkvEFevni~v~fk~  285 (313)
T KOG2717|consen  251 L-PIYMVLPRLFTCPTL--FTGNFKVEFEVNITVSFKS  285 (313)
T ss_pred             e-eEEEEechhhcCCce--eccccEEEEEEEEEEEEcc
Confidence            2 34455677  67885  4666799999999887753

>PF07070 Spo0M: SpoOM protein; InterPro: IPR009776 This family consists of several bacterial SpoOM proteins which are thought to control sporulation in Bacillus subtilis

Probab=95.33  E-value=0.89  Score=43.79  Aligned_cols=108  Identities=18%  Similarity=0.189  Sum_probs=79.5

Q ss_pred             ecCCceeEEEEeccceecCCCeEEEEEEEeec-cceeeeeeEEEEEEEEEEEeccceeeeeEEEEeeee---cCccCCCC
Q psy10650        278 VSSGPVLCRVSLDRGGYVPGETIIINATVYNR-SKITVKSTKAALTETIQYLARNKVLESETRELASLT---RGKIKPGE  353 (446)
Q Consensus       278 ~~~G~v~l~~sl~r~gY~pGE~I~i~v~I~N~-S~~~I~~i~v~Liq~v~y~a~~~~~~~~~~~V~~~~---~~~V~~g~  353 (446)
                      +.-|..++...+++..|.|||+|.=.+.|.-. ....|..|.+.|+..+.....+... ....++....   .-.|.+|+
T Consensus         8 ~GiG~akVDT~L~~~~~~pGe~v~G~V~i~GG~v~Q~I~~I~l~L~t~~~~e~~d~~~-~~~~~~~~~~v~~~f~I~~ge   86 (218)
T PF07070_consen    8 IGIGGAKVDTVLEKPSVRPGETVRGEVHIKGGSVDQEIDRIYLELVTRYEVESDDKEY-TQEVELARVRVSGPFTIEPGE   86 (218)
T ss_pred             cCCCCceEEEEECCCCccCCCEEEEEEEEEeCCcceEEeEEEEEEEEEEEEecCCCeE-EEEEEEEEEEeCCCEEECCCC
Confidence            45688899999999999999999999999885 6689999999999887765544321 1233444432   34689999


Q ss_pred             ccceeeeeEecCCCCCCCcCCCceEEEEEEEEEEEecCC
Q psy10650        354 RDDWTNQQLYVPPLPPTNLRGCHLIKIQYDVFFIVDPKS  392 (446)
Q Consensus       354 ~~~~~~~~L~IP~i~PT~l~~~~iI~V~Y~L~V~v~~~~  392 (446)
                      ..++ ...|.||.-.|-+. .    ...|.|+-.+++.+
T Consensus        87 ~~~i-PF~~~lP~etPiT~-~----~~~v~l~T~LdI~~  119 (218)
T PF07070_consen   87 EKEI-PFSFPLPWETPITE-G----GMRVWLRTGLDIAG  119 (218)
T ss_pred             EEEE-eEEEECCCCCCccC-C----CcEEEEEEEEEeCC
Confidence            9888 88999998555432 2    45666677777765

Spo0M exerts certain negative effects on sporulation and its gene expression is controlled by sigmaH [].

>PF03643 Vps26: Vacuolar protein sorting-associated protein 26 ; InterPro: IPR005377 The movement of lipid and protein components between intracellular organelles requires the regulated interactions of many molecules

Probab=93.32  E-value=1.9  Score=42.97  Aligned_cols=138  Identities=19%  Similarity=0.200  Sum_probs=74.4

Q ss_pred             CceEEEEEEEEcCCcceeEeeeceeeeccccccccceeeeeEecCCceeEEEEeccceecCCCeEEEEEEEeecc--cee
Q psy10650        236 GETIIINATVYNRSKITVKSTKAALTEQPFDCEIEHKLGVACVSSGPVLCRVSLDRGGYVPGETIIINATVYNRS--KIT  313 (446)
Q Consensus       236 GE~I~v~v~I~N~S~k~ik~i~~~L~q~~~~~~~~~~~~~~c~~~G~v~l~~sl~r~gY~pGE~I~i~v~I~N~S--~~~  313 (446)
                      |..+.|.+.+++...+....++..                    .|..     -.-..|..||+|.=.+.|....  +..
T Consensus         2 ~~~~~i~i~l~~~~~rk~v~~~~~--------------------~~~~-----~~~~iY~~gE~V~G~V~I~~~~gk~~~   56 (275)
T PF03643_consen    2 GPPCDIDIELDDEDSRKKVEVKTD--------------------DGKK-----EKNPIYSDGETVSGKVVITSKPGKSLE   56 (275)
T ss_dssp             TTTEEEEEEETTCCCS-EEEEE-T--------------------TS-E-----EEEEEEETC--EEEEEEEEESSTS-EE
T ss_pred             CCceEEEEEECCCcccceEEEECC--------------------CCCE-----EEeceEcCCCEEEEEEEEEECCCCceE
Confidence            567778888888877766554422                    0111     0113688999999999997766  556


Q ss_pred             eeeeEEEEEEEEEE-Eeccceee--eeEEEEeeeecCccCCCCccceeeeeEecCC---CCCCCcCCCceEEEEEEEEEE
Q psy10650        314 VKSTKAALTETIQY-LARNKVLE--SETRELASLTRGKIKPGERDDWTNQQLYVPP---LPPTNLRGCHLIKIQYDVFFI  387 (446)
Q Consensus       314 I~~i~v~Liq~v~y-~a~~~~~~--~~~~~V~~~~~~~V~~g~~~~~~~~~L~IP~---i~PT~l~~~~iI~V~Y~L~V~  387 (446)
                      -.+|++.|+-.+.. +.+++.-.  ...+.++  ..+.+..+.+     .+|..|.   --.|.  .+..++|.|.|+|+
T Consensus        57 H~GI~l~lvG~ie~~~~~~k~~~f~~~~~eL~--~~G~l~~~~t-----~pFeF~~~~k~yETY--~G~~v~i~Y~lrv~  127 (275)
T PF03643_consen   57 HQGIKLELVGQIEAFYDSGKPIEFLSLSIELA--PPGKLPEGKT-----FPFEFPLVEKPYETY--HGVNVNIRYFLRVT  127 (275)
T ss_dssp             ES-EEEEEEEEEEEGCCTT-EEEEEEEEEEEE---SEEE-S-EE-----EEEEE-SB---S--E--E-SSEEEEEEEEEE
T ss_pred             EeeEEEEEEEeEeEeccCCCceEeEEeeEEEc--CCcccCCCcE-----EeeEeCCCCCCCccE--eeeEEEEEEEEEEE
Confidence            67899999876644 33332211  1111111  1234444444     2333333   34564  57789999999999


Q ss_pred             EecCCCCCCeEEEecEEEEeec
Q psy10650        388 VDPKSIEKPVKLQLPIMLATYP  409 (446)
Q Consensus       388 v~~~~~~~~l~v~lPIiIGtvP  409 (446)
                      +.-+.  .++.-+.++++-...
T Consensus       128 v~R~~--~~i~k~~ef~V~~~~  147 (275)
T PF03643_consen  128 VKRSY--KDISKEQEFWVQNFS  147 (275)
T ss_dssp             E--SS--S-EEEEEEEEEE-EB
T ss_pred             EEccC--CCcceEEEEEEEecc
Confidence            97654  789999999887543

Vacuolar protein sorting-associated protein (Vps)5 is a yeast protein that is a subunit of a large multimeric complex, termed the retromer complex, involved in retrograde transport of proteins from endosomes to the trans-Golgi network. Sorting nexin (SNX) 1 and SNX2 are its mammalian orthologs []. To carry out its biological functions, Vps5 forms the retromer complex with at least four other proteins: Vps17, Vps26, Vps29, and Vps35 []. This family of Vps26-proteins also contains Down syndrome critical region 3/A.; GO: 0007034 vacuolar transport, 0030904 retromer complex; PDB: 3LHA_A 3LH9_A 2R51_A 3LH8_B 2FAU_A.

>PF08737 Rgp1: Rgp1; InterPro: IPR014848 Rgp1 forms heterodimer with Ric1 (IPR009771 from INTERPRO) which associates with Golgi membranes and functions as a guanyl-nucleotide exchange factor []

Probab=91.49  E-value=0.56  Score=49.48  Aligned_cols=57  Identities=26%  Similarity=0.486  Sum_probs=45.6

Q ss_pred             ccCCCCccceeeeeEecCC-CCCCCcCCCceEEEEEEEEEEEecCC--CCCCeEEEecEEEEe
Q psy10650        348 KIKPGERDDWTNQQLYVPP-LPPTNLRGCHLIKIQYDVFFIVDPKS--IEKPVKLQLPIMLAT  407 (446)
Q Consensus       348 ~V~~g~~~~~~~~~L~IP~-i~PT~l~~~~iI~V~Y~L~V~v~~~~--~~~~l~v~lPIiIGt  407 (446)
                      .+.||++++| ...+.+|. +|||+  ++..|++.|.|.|.+.-.+  -.....+.+||-|-.
T Consensus       114 ~L~pge~k~f-~~~~~lP~~lPPsy--~g~~i~~~Y~l~vg~~~~~~~~~~~~~~~~Pi~v~~  173 (415)
T PF08737_consen  114 RLAPGESKSF-HFSFTLPKDLPPSY--RGKAIKISYSLVVGTQRGSSVNSKVKSIRVPIRVLP  173 (415)
T ss_pred             EECCCCcEEE-EEEEeCCCCCCCCC--cCcEEEEEEEEEEEEEEcCCCCcceEEEEeCEEEee
Confidence            5688999999 88999999 88885  5999999999999886621  224567888887763

>COG1470 Predicted membrane protein [Function unknown]

Probab=88.59  E-value=16  Score=38.95  Aligned_cols=91  Identities=15%  Similarity=0.236  Sum_probs=59.8

Q ss_pred             cCCCeEEEEEEEeeccceeeeeeEEEEEEEEEEEeccceeeeeEEEEeeeecCccCCCCccceeeeeEecCCCCCCCcCC
Q psy10650        295 VPGETIIINATVYNRSKITVKSTKAALTETIQYLARNKVLESETRELASLTRGKIKPGERDDWTNQQLYVPPLPPTNLRG  374 (446)
Q Consensus       295 ~pGE~I~i~v~I~N~S~~~I~~i~v~Liq~v~y~a~~~~~~~~~~~V~~~~~~~V~~g~~~~~~~~~L~IP~i~PT~l~~  374 (446)
                      .+||...+.+.|.|..+.+++.|++.+---.     +..-     .|....-..++||+..+. ...+.+|+-++..   
T Consensus       394 taGee~~i~i~I~NsGna~LtdIkl~v~~Pq-----gWei-----~Vd~~~I~sL~pge~~tV-~ltI~vP~~a~aG---  459 (513)
T COG1470         394 TAGEEKTIRISIENSGNAPLTDIKLTVNGPQ-----GWEI-----EVDESTIPSLEPGESKTV-SLTITVPEDAGAG---  459 (513)
T ss_pred             cCCccceEEEEEEecCCCccceeeEEecCCc-----cceE-----EECcccccccCCCCcceE-EEEEEcCCCCCCC---
Confidence            4999999999999999999999888665322     1111     122223356888988887 8889999865543   


Q ss_pred             CceEEEEEEEEEEEecCCCCCCeEEEecEEEEe
Q psy10650        375 CHLIKIQYDVFFIVDPKSIEKPVKLQLPIMLAT  407 (446)
Q Consensus       375 ~~iI~V~Y~L~V~v~~~~~~~~l~v~lPIiIGt  407 (446)
                            +|++.+++..+-..  -.-.|-|.+|.
T Consensus       460 ------dY~i~i~~ksDq~s--~e~tlrV~V~~  484 (513)
T COG1470         460 ------DYRITITAKSDQAS--SEDTLRVVVGQ  484 (513)
T ss_pred             ------cEEEEEEEeecccc--ccceEEEEEec
Confidence                  47777776555322  23333444554

>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds

Probab=85.19  E-value=10  Score=31.76  Aligned_cols=74  Identities=15%  Similarity=0.142  Sum_probs=48.4

Q ss_pred             EEEEEEcccccccCceEEEEEEEEcCCcceeEeeeceeeeccccccccceeeeeEecCCcee--EEEEeccceecCCCeE
Q psy10650        223 LCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALTEQPFDCEIEHKLGVACVSSGPVL--CRVSLDRGGYVPGETI  300 (446)
Q Consensus       223 ~l~v~lpr~gYvPGE~I~v~v~I~N~S~k~ik~i~~~L~q~~~~~~~~~~~~~~c~~~G~v~--l~~sl~r~gY~pGE~I  300 (446)
                      ++.+.++.... -|+.+.+.+.+.|.++..++.+++.|.-.+.            ..+|...  +.......-..||++.
T Consensus         2 ~~~i~~~~~~~-vG~d~~v~v~~~N~~~~~l~~v~~~l~~~~v------------~ytG~~~~~~~~~~~~~~l~p~~~~   68 (107)
T PF00927_consen    2 EIKIKLPGDPV-VGQDFTVSVSFTNPSSEPLRNVSLNLCAFTV------------EYTGLTRDQFKKEKFEVTLKPGETK   68 (107)
T ss_dssp             EEEEEEESEEB-TTSEEEEEEEEEE-SSS-EECEEEEEEEEEE------------ECTTTEEEEEEEEEEEEEE-TTEEE
T ss_pred             eEEEEECCCcc-CCCCEEEEEEEEeCCcCccccceeEEEEEEE------------EECCcccccEeEEEcceeeCCCCEE
Confidence            45566666665 8999999999999999999999888754321            1244442  3334444455689988


Q ss_pred             EEEEEEeec
Q psy10650        301 IINATVYNR  309 (446)
Q Consensus       301 ~i~v~I~N~  309 (446)
                      .+.+.|.-.
T Consensus        69 ~~~~~i~p~   77 (107)
T PF00927_consen   69 SVEVTITPS   77 (107)
T ss_dssp             EEEEEE-HH
T ss_pred             EEEEEEEce
Confidence            888887553

Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....

>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white

Probab=83.99  E-value=3.8  Score=33.64  Aligned_cols=26  Identities=35%  Similarity=0.427  Sum_probs=21.8

Q ss_pred             EEEEEcccccccCceEEEEEEEEcCC
Q psy10650        224 CRVSLDRGGYVPGETIIINATVYNRS  249 (446)
Q Consensus       224 l~v~lpr~gYvPGE~I~v~v~I~N~S  249 (446)
                      +-+..||..|.|||+|.+.+-+-+..
T Consensus         2 ~~i~TDr~iYrPGetV~~~~~~~~~~   27 (99)
T PF01835_consen    2 IFIQTDRPIYRPGETVHFRAIVRDLD   27 (99)
T ss_dssp             EEEEESSSEE-TTSEEEEEEEEEEEC
T ss_pred             EEEECCccCcCCCCEEEEEEEEeccc
Confidence            35788999999999999999987776

A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....

>COG3175 COX11 Cytochrome oxidase assembly factor [Posttranslational modification, protein turnover, chaperones]

Probab=82.41  E-value=6.8  Score=36.51  Aligned_cols=84  Identities=20%  Similarity=0.182  Sum_probs=53.0

Q ss_pred             ccCceEEEEEEEEcCCcceeEeeeceeeeccccc-cccceeeeeEecCCceeEEEEeccceecCCCeEEEE--EEEeec-
Q psy10650        234 VPGETIIINATVYNRSKITVKSTKAALTEQPFDC-EIEHKLGVACVSSGPVLCRVSLDRGGYVPGETIIIN--ATVYNR-  309 (446)
Q Consensus       234 vPGE~I~v~v~I~N~S~k~ik~i~~~L~q~~~~~-~~~~~~~~~c~~~G~v~l~~sl~r~gY~pGE~I~i~--v~I~N~-  309 (446)
                      .|||+..+.-+..|.|.++|....+-=+. +-.| ..=.++.|+|+.           .+-..|||+|.+=  ..|++. 
T Consensus        90 ~pGet~~~~y~a~N~sd~~itg~A~~nv~-P~~Ag~YF~KveCFCFt-----------eq~L~pgE~vemPV~FfVDpd~  157 (195)
T COG3175          90 RPGETNLIFYEAENLSDKPITGQATYNVA-PGQAGAYFNKVECFCFT-----------EQTLKPGETVEMPVVFFVDPDF  157 (195)
T ss_pred             ccCceEEEEEEEecCCCCCceeEEecccC-hhHhhhheeeeeEEEee-----------ecccCCCCeEeccEEEEECccc
Confidence            69999999999999999999885432221 1111 112356788873           3556799987655  466764 


Q ss_pred             -cceeeeeeEEEEEEEEEEEe
Q psy10650        310 -SKITVKSTKAALTETIQYLA  329 (446)
Q Consensus       310 -S~~~I~~i~v~Liq~v~y~a  329 (446)
                       ....++.|+.-..-+.-|.+
T Consensus       158 ~~dPe~kdvk~iTLSYTFF~~  178 (195)
T COG3175         158 ADDPEMKDVKTITLSYTFFPI  178 (195)
T ss_pred             ccCcccCCCCeEEEEEEEEEc
Confidence             33445666555554544443

>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known

Probab=81.96  E-value=12  Score=29.39  Aligned_cols=65  Identities=20%  Similarity=0.292  Sum_probs=36.0

Q ss_pred             cCCCeEEEEEEEeeccceeeeeeEEEEEEEEEEEeccceeeeeEEEEeeeecCccCCCCccceeeeeEecCCCCCC
Q psy10650        295 VPGETIIINATVYNRSKITVKSTKAALTETIQYLARNKVLESETRELASLTRGKIKPGERDDWTNQQLYVPPLPPT  370 (446)
Q Consensus       295 ~pGE~I~i~v~I~N~S~~~I~~i~v~Liq~v~y~a~~~~~~~~~~~V~~~~~~~V~~g~~~~~~~~~L~IP~i~PT  370 (446)
                      .+|+++.+.+.|.|.....+..+.++|--     -.|........     ....+++|.+.++ ...+.+|...+.
T Consensus         2 ~~G~~~~~~~tv~N~g~~~~~~v~~~l~~-----P~GW~~~~~~~-----~~~~l~pG~s~~~-~~~V~vp~~a~~   66 (78)
T PF10633_consen    2 TPGETVTVTLTVTNTGTAPLTNVSLSLSL-----PEGWTVSASPA-----SVPSLPPGESVTV-TFTVTVPADAAP   66 (78)
T ss_dssp             -TTEEEEEEEEEE--SSS-BSS-EEEEE-------TTSE---EEE-----EE--B-TTSEEEE-EEEEEE-TT--S
T ss_pred             CCCCEEEEEEEEEECCCCceeeEEEEEeC-----CCCccccCCcc-----ccccCCCCCEEEE-EEEEECCCCCCC
Confidence            48999999999999888888877776652     12222111111     1227889998887 888999985543

It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.

>PRK05089 cytochrome C oxidase assembly protein; Provisional

Probab=80.91  E-value=4.7  Score=37.94  Aligned_cols=73  Identities=21%  Similarity=0.175  Sum_probs=48.6

Q ss_pred             ccCceEEEEEEEEcCCcceeEeeeceeeeccccc-cccceeeeeEecCCceeEEEEeccceecCCCeEEEE--EEEeecc
Q psy10650        234 VPGETIIINATVYNRSKITVKSTKAALTEQPFDC-EIEHKLGVACVSSGPVLCRVSLDRGGYVPGETIIIN--ATVYNRS  310 (446)
Q Consensus       234 vPGE~I~v~v~I~N~S~k~ik~i~~~L~q~~~~~-~~~~~~~~~c~~~G~v~l~~sl~r~gY~pGE~I~i~--v~I~N~S  310 (446)
                      .|||+..+.-.+.|.|.+.|....+==+ .+..+ ..=.++.|+|+           +.+-+.|||++.+-  ..|+..-
T Consensus        91 ~pGE~~~~~y~a~N~sd~~i~g~A~~nV-~P~~a~~YF~KieCFCF-----------~eQ~L~pgE~~~mPV~F~IDP~i  158 (188)
T PRK05089         91 HPGELNLVFYEAENLSDRPIVGQAIPSV-TPGQAGAYFNKIECFCF-----------TQQTLQPGETREMPVVFYVDPDL  158 (188)
T ss_pred             cCCCeEEEEEEEECCCCCcEEEEEeccc-CHHHHhhhccceeeecc-----------cCcccCCCCeEecCEEEEECCCc
Confidence            5999999999999999999988654322 23222 22235778887           56778899976554  4566654


Q ss_pred             ceeeeeeE
Q psy10650        311 KITVKSTK  318 (446)
Q Consensus       311 ~~~I~~i~  318 (446)
                      ..+|+.|.
T Consensus       159 ~~dv~~iT  166 (188)
T PRK05089        159 PKDVKTIT  166 (188)
T ss_pred             ccccCEEE
Confidence            44454433

>PF07070 Spo0M: SpoOM protein; InterPro: IPR009776 This family consists of several bacterial SpoOM proteins which are thought to control sporulation in Bacillus subtilis

Probab=80.87  E-value=6.1  Score=38.10  Aligned_cols=53  Identities=19%  Similarity=0.321  Sum_probs=33.0

Q ss_pred             eeecCe-EEEEeEEEecCCCCCceEEeecccEEEEEEEEEecCCCCCccceEEEEEEe
Q psy10650        115 VLLSPG-IHSFPFKLGLPLGLPSTFLGKHGWVQYFCKAALREPTGYTHKNQQVFIIMS  171 (446)
Q Consensus       115 ~~l~~G-~~~~pf~f~LP~~lP~Sf~~~~g~IrY~i~~~i~~p~~~d~~~~~~~~V~~  171 (446)
                      +.+.+| .+.+||+|+||.+.|-|.    +..+|.+...++..+..|....-.+.|.+
T Consensus        80 f~I~~ge~~~iPF~~~lP~etPiT~----~~~~v~l~T~LdI~~avD~~D~D~i~V~P  133 (218)
T PF07070_consen   80 FTIEPGEEKEIPFSFPLPWETPITE----GGMRVWLRTGLDIAGAVDPGDLDPIEVEP  133 (218)
T ss_pred             EEECCCCEEEEeEEEECCCCCCccC----CCcEEEEEEEEEeCCCCCCCCceeEEEeC
Confidence            445554 566677777777666655    44557777777777766654444555554

Spo0M exerts certain negative effects on sporulation and its gene expression is controlled by sigmaH [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	446
1suj_A	392	CONE arrestin; sensory transduction, signaling pro	99.96
1g4m_A	393	Beta-arrestin1; sensory transduction, alternative	99.96
3ugu_A	380	S-arrestin; arrestin fold, signal termination, GPC	99.91
2r51_A	340	Vacuolar protein sorting-associated protein 26B; r	99.84
2fau_A	341	Vacuolar protein sorting 26; arrestin, retromer, p	99.69
2fau_A	341	Vacuolar protein sorting 26; arrestin, retromer, p	99.06
1suj_A	392	CONE arrestin; sensory transduction, signaling pro	98.78
3ugu_A	380	S-arrestin; arrestin fold, signal termination, GPC	98.59
1g4m_A	393	Beta-arrestin1; sensory transduction, alternative	97.47
2r51_A	340	Vacuolar protein sorting-associated protein 26B; r	97.18
2p9r_A	102	Alpha-2-M, alpha-2-macroglobulin; human alpha2-mac	88.61
3isy_A	120	Bsupi, intracellular proteinase inhibitor; intrace	81.53

>1suj_A CONE arrestin; sensory transduction, signaling protein; 2.38A {Ambystoma tigrinum}

Probab=99.96  E-value=2e-28  Score=249.42  Aligned_cols=214  Identities=23%  Similarity=0.297  Sum_probs=144.8

Q ss_pred             CCeeeEeeeEeecCCCCCCccccCCCeeecCeEEEEeEEEecCCCCCceEEeecccEEEEEEEEEecCCCCC-ccceEEE
Q psy10650         89 SPGIHSFPFKLGLPLGLPSTFLGQAPVLLSPGIHSFPFKLGLPLGLPSTFLGKHGWVQYFCKAALREPTGYT-HKNQQVF  167 (446)
Q Consensus        89 p~G~H~fpF~~~LP~~LPsSfeg~~g~~l~~G~~~~pf~f~LP~~lP~Sf~~~~g~IrY~i~~~i~~p~~~d-~~~~~~~  167 (446)
                      ++|.|.|||+|+||.+||+||+...+                     ++++|++|.|+|.|+|.++++|... .+.....
T Consensus       104 ~~G~h~fPFsFqLP~~lPsSf~lqp~---------------------~~~eGk~g~VrY~VKa~i~~~~~dk~~Kr~tv~  162 (392)
T 1suj_A          104 KLGAHAYPFCFKMGTNLPCSVTLQPG---------------------PDDTGKSCGVDFEVKAFCAENLEEKIHKRNSVQ  162 (392)
T ss_dssp             HHCSSEEEEEECCCSSCCCCEEECCC---------------------TTCCSCCEEEEEEEEEEEESCTTSCCCGGGEEE
T ss_pred             cccCeeEeEEeeCCCCCCCeEEeccC---------------------CccCCCceeEEEEEEEEEcCChhhccceEEEEE
Confidence            78888888888888888888865541                     3567788999999999999987321 2211222


Q ss_pred             EEEeccccCCCCCccceeeeccccccCCCCCCCCCCCceeEeEeEeeeeecCCcEEEEEEEcccccccCceEEEEEEEEc
Q psy10650        168 IIMSPIDLNLEPPILSVFIIMSPIDLNLEPPILSQPFDCEIEHKLGVACVSSGPVLCRVSLDRGGYVPGETIIINATVYN  247 (446)
Q Consensus       168 ~V~~~~dl~~~p~~~~~~~~~~P~~~~~~~p~~~~p~~~~~~k~~~~~c~~sG~v~l~v~lpr~gYvPGE~I~v~v~I~N  247 (446)
                      .++.  +++..|...           .      ..| ..+.++.   |||++|+|+|+++|||.||+|||+|+|++.|+|
T Consensus       163 l~ir--~l~~~P~~~-----------~------~~p-~~e~~k~---f~~ssGpl~l~vsLdK~~Y~pGE~I~V~v~I~N  219 (392)
T 1suj_A          163 LVIR--KVQFAPANL-----------G------VAP-KTEITRQ---FMLSDRPLHLEASLDKEIYYHGEPINVNVKINN  219 (392)
T ss_dssp             EEEE--EEECCCSSC-----------C------CCC-CCEEEEE---EEETTEEEEEEEEESCSEEETTCCEEEEEEEEE
T ss_pred             Eeee--ccccCcccc-----------C------CCC-eeEEEEE---eEecCCCEEEEEEeCCccccCCCEEEEEEEEEC
Confidence            2233  333222211           0      012 2333333   579999999999999999999999999999999


Q ss_pred             CCcceeEeeeceeeeccccccccceeeeeEecCCceeEEEEeccceecCCCeEEEEEEEeeccceeeeeeEEEEEEEEEE
Q psy10650        248 RSKITVKSTKAALTEQPFDCEIEHKLGVACVSSGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALTETIQY  327 (446)
Q Consensus       248 ~S~k~ik~i~~~L~q~~~~~~~~~~~~~~c~~~G~v~l~~sl~r~gY~pGE~I~i~v~I~N~S~~~I~~i~v~Liq~v~y  327 (446)
                      .|++.|+.|+++|.|....+                     +    |                                 
T Consensus       220 ~Ssk~Vk~Ikv~L~Q~~~v~---------------------l----~---------------------------------  241 (392)
T 1suj_A          220 TTGKIVKKIKIIVEQVTDVV---------------------L----F---------------------------------  241 (392)
T ss_dssp             CSSSEEEEEEEEEEEEEEEC---------------------S----S---------------------------------
T ss_pred             CCCCcEeEEEEEEEEEEEEE---------------------E----e---------------------------------
Confidence            99999998888888752110                     0    0                                 


Q ss_pred             EeccceeeeeEEEEeeee-cCccCCCCccceeeeeEecCCCC-----------------CCCcCCCce-----------E
Q psy10650        328 LARNKVLESETRELASLT-RGKIKPGERDDWTNQQLYVPPLP-----------------PTNLRGCHL-----------I  378 (446)
Q Consensus       328 ~a~~~~~~~~~~~V~~~~-~~~V~~g~~~~~~~~~L~IP~i~-----------------PT~l~~~~i-----------I  378 (446)
                       +.+.    ..++|+++. ..+|.+|++.++ ... .+|.++                 ||.+..|.+           |
T Consensus       242 -s~~~----~k~~Va~~e~~e~V~pgst~~k-~~~-L~P~l~~n~~k~glaldg~lk~~dTnLassti~~~~~~~~~~gI  314 (392)
T 1suj_A          242 -SLDK----YVKTVCAEETNDTVAANSTLSK-TFS-VTPMLANNREKRGLALDGKLKHEDTNLASTTVIRPGMDKEVLGI  314 (392)
T ss_dssp             -SCCE----EEEEEEEEECCCCBCTTEEEEE-EEE-ECCCGGGCSCCTTCCBSSCTTBSSCCBCCCCCCCTTSCGGGGSE
T ss_pred             -cCCc----EEEEEEEEecCCCcCCCCEEEE-EEE-EeccccCCCccceeeecccccCCCccccccccccCCCCccccce
Confidence             0000    012444443 458888877332 222 246666                 576666776           8


Q ss_pred             EEEEEEEEEEecCC--C-----CCCeEEEecEEEEeecCC
Q psy10650        379 KIQYDVFFIVDPKS--I-----EKPVKLQLPIMLATYPFR  411 (446)
Q Consensus       379 ~V~Y~L~V~v~~~~--~-----~~~l~v~lPIiIGtvPl~  411 (446)
                      .|+|.|+|.+.+++  |     ..++.++|||+|+.....
T Consensus       315 ~VsY~vkVkl~v~~gg~~~~~~s~d~~velPf~L~~p~P~  354 (392)
T 1suj_A          315 LVSYKVKVHLVVARGGILGDLTSSDVAVELPLTLMHPKPS  354 (392)
T ss_dssp             EEEEEEEEEEEEETTSSTTCCCCEEEEEEEEEEEECCCCC
T ss_pred             EEEEEEEEEEEEcCCcccccccccCeeEEECeEEeCCCCC
Confidence            99999999999876  3     259999999999875443

>1g4m_A Beta-arrestin1; sensory transduction, alternative splicing, signaling protein; 1.90A {Bos taurus} SCOP: b.1.18.11 b.1.18.11 PDB: 1g4r_A 3gd1_C 1jsy_A 1zsh_A* 2wtr_A 2wtr_B 3gc3_A 3p2d_A

Probab=99.96  E-value=1.3e-28  Score=252.71  Aligned_cols=215  Identities=23%  Similarity=0.260  Sum_probs=141.1

Q ss_pred             CeeeEeeeEeecCCCCCCccccCCCeeecCeEEEEeEEEecCCCCCceEEeecccEEEEEEEEEecCCCCCccceEEEEE
Q psy10650         90 PGIHSFPFKLGLPLGLPSTFLGQAPVLLSPGIHSFPFKLGLPLGLPSTFLGKHGWVQYFCKAALREPTGYTHKNQQVFII  169 (446)
Q Consensus        90 ~G~H~fpF~~~LP~~LPsSfeg~~g~~l~~G~~~~pf~f~LP~~lP~Sf~~~~g~IrY~i~~~i~~p~~~d~~~~~~~~V  169 (446)
                      +|.|.|||+|+||.+||+||+...+                     +-..|.+|.|+|.|+|.+++++ .+....+.+++
T Consensus       108 ~G~h~fPF~f~LP~~lPsSfelq~~---------------------~~d~G~~g~IrY~Vka~i~~~~-~~k~~K~~~v~  165 (393)
T 1g4m_A          108 LGEHAYPFTFEIPPNLPCSVTLQPG---------------------PEDTGKACGVDYEVKAFCAENL-EEKIHKRNSVR  165 (393)
T ss_dssp             SCTTEEEEEECCCTTSCCCEEEECC---------------------GGGGGGCEEEEEEEEEEEESST-TSCCCGGGEEE
T ss_pred             CCceEEEEEeeCCCCCCceEEEccc---------------------cccCCCcEEEEEEEEEEEcCCc-ccccceEEEEE
Confidence            7777777777777777777752210                     0001457899999999999883 22211222222


Q ss_pred             EeccccCCCCCccceeeeccccccCCCCCCCCCCCceeEeEeEeeeeecCCcEEEEEEEcccccccCceEEEEEEEEcCC
Q psy10650        170 MSPIDLNLEPPILSVFIIMSPIDLNLEPPILSQPFDCEIEHKLGVACVSSGPVLCRVSLDRGGYVPGETIIINATVYNRS  249 (446)
Q Consensus       170 ~~~~dl~~~p~~~~~~~~~~P~~~~~~~p~~~~p~~~~~~k~~~~~c~~sG~v~l~v~lpr~gYvPGE~I~v~v~I~N~S  249 (446)
                      +...+++..|..                  +..|...+.++.   |||++|+|+|+++|||+||+|||+|+|++.|+|.|
T Consensus       166 l~i~~l~~~p~~------------------~~~~~~~e~~k~---fc~~sG~l~l~~sldk~~Y~pGE~I~v~v~I~N~S  224 (393)
T 1g4m_A          166 LVIRKVQYAPER------------------PGPQPTAETTRQ---FLMSDKPLHLEASLDKEIYYHGEPISVNVHVTNNT  224 (393)
T ss_dssp             EEEEEEECCCCC------------------CSSCCCCEEEEE---CBSSSSCEEEEEEESCSEEETTCCEEEEEEEEECS
T ss_pred             EeccccccCchh------------------hcCCCceEEEEE---EEEcCCCEEEEEEECCceEcCCCEEEEEEEEEcCC
Confidence            333333332221                  112223344443   46899999999999999999999999999999999


Q ss_pred             cceeEeeeceeeeccccccccceeeeeEecCCceeEEEEeccceecCCCeEEEEEEEeeccceeeeeeEEEEEEEEEEEe
Q psy10650        250 KITVKSTKAALTEQPFDCEIEHKLGVACVSSGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALTETIQYLA  329 (446)
Q Consensus       250 ~k~ik~i~~~L~q~~~~~~~~~~~~~~c~~~G~v~l~~sl~r~gY~pGE~I~i~v~I~N~S~~~I~~i~v~Liq~v~y~a  329 (446)
                      ++.|+.|+++|.|....          |               .|                                  +
T Consensus       225 ~k~Vk~Ikv~L~Q~~~~----------~---------------~~----------------------------------s  245 (393)
T 1g4m_A          225 NKTVKKIKISVRQYADI----------C---------------LF----------------------------------N  245 (393)
T ss_dssp             SCCEEEEEEEEEEEEEE----------C---------------SS----------------------------------B
T ss_pred             CCEEeEEEEEEEEEEEE----------E---------------Ee----------------------------------c
Confidence            99999999998885310          0               00                                  0


Q ss_pred             ccceeeeeEEEEeeee-cCccCCCCccceeeeeEecCCCCC-----------------CCcCCCceEE-----------E
Q psy10650        330 RNKVLESETRELASLT-RGKIKPGERDDWTNQQLYVPPLPP-----------------TNLRGCHLIK-----------I  380 (446)
Q Consensus       330 ~~~~~~~~~~~V~~~~-~~~V~~g~~~~~~~~~L~IP~i~P-----------------T~l~~~~iI~-----------V  380 (446)
                      .+.    ..++|++.+ ..+|.+|++..+ ...| +|.++|                 |++..|.||+           |
T Consensus       246 ~~~----~k~~Va~~e~~~~V~~gs~~~~-~~~L-~P~l~p~~~~~~~aldg~lk~~dt~l~ss~ii~~~~~~~~~gi~V  319 (393)
T 1g4m_A          246 TAQ----YKCPVAMEEADDTVAPSSTFCK-VYTL-TPFLANNREKRGLALDGKLKHEDTNLASSTLLREGANREILGIIV  319 (393)
T ss_dssp             CEE----EEEEEEEEEECCCBCTTEEEEE-EEEE-CCCGGGTTTCSSEEESSCTTSTTCCBCCCCCCCTTCCSGGGSEEE
T ss_pred             CCc----eEEEEEEEecCCcCCCCCEEee-EEEE-cCCCCCcccccceeeccccccCCcccccceeecCCCCccccceEE
Confidence            000    012344433 347888877644 4344 677877                 7778899999           9


Q ss_pred             EEEEEEEEecCC--C-----CCCeEEEecEEEEeecCCC
Q psy10650        381 QYDVFFIVDPKS--I-----EKPVKLQLPIMLATYPFRQ  412 (446)
Q Consensus       381 ~Y~L~V~v~~~~--~-----~~~l~v~lPIiIGtvPl~~  412 (446)
                      +|.|+|.+.+++  |     ..++.++|||+||+.+-..
T Consensus       320 sY~vkV~l~v~~gg~~~~~~~~~l~~~lPi~i~~p~p~~  358 (393)
T 1g4m_A          320 SYKVKVKLVVSRGGLLGDLASSDVAVELPFTLMHPKPKE  358 (393)
T ss_dssp             EEEEEEEEEECCC--------CEEEEEEEEEEECCCCC-
T ss_pred             EEEEEEEEEecCCCcccccccccEEEEeCEEEecCCCCc
Confidence            999999998874  2     4699999999999966544

>3ugu_A S-arrestin; arrestin fold, signal termination, GPCR, outer segment, SIGN protein; 1.85A {Bos taurus} PDB: 3ugx_A 1cf1_A 1ayr_A

Probab=99.91  E-value=1.2e-22  Score=203.90  Aligned_cols=130  Identities=25%  Similarity=0.333  Sum_probs=93.8

Q ss_pred             eeeEeeeEeecCCCCCCccccCCCeeecCeEEEEeEEEecCCCCCceEEeecccEEEEEEEEEecCCC--CC--ccceEE
Q psy10650         91 GIHSFPFKLGLPLGLPSTFLGQAPVLLSPGIHSFPFKLGLPLGLPSTFLGKHGWVQYFCKAALREPTG--YT--HKNQQV  166 (446)
Q Consensus        91 G~H~fpF~~~LP~~LPsSfeg~~g~~l~~G~~~~pf~f~LP~~lP~Sf~~~~g~IrY~i~~~i~~p~~--~d--~~~~~~  166 (446)
                      |.|.|||.|+||.+||+||...++                     +..+|+.|.|+|.|++.+.++|.  .+  .+....
T Consensus       122 G~nayPF~f~LP~~lPsSv~LQp~---------------------p~d~Gk~cgV~YeVKafia~~~~~~~dk~~Kr~sV  180 (380)
T 3ugu_A          122 GANTYPFLLTFPDYLPCSVMLQPA---------------------PQDVGKSCGVDFEIKAFATHSTDVEEDKIPKKSSV  180 (380)
T ss_dssp             CTTEEEEEECCCSSCCCSEEECCC---------------------TTCCSCCEEEEEEEEEEEEBCCSSSSSBCCGGGEE
T ss_pred             CcCceeEEEeCCCCCCCEEEeccC---------------------CccCCCccceEEEEEEEEccCcccccccccccceE
Confidence            666666666666666666655442                     11246778999999999999873  32  333344


Q ss_pred             EEEEeccccCCCCCccceeeeccccccCCCCCCCCCCCceeEeEeEeeeeecCCcEEEEEEEcccccccCceEEEEEEEE
Q psy10650        167 FIIMSPIDLNLEPPILSVFIIMSPIDLNLEPPILSQPFDCEIEHKLGVACVSSGPVLCRVSLDRGGYVPGETIIINATVY  246 (446)
Q Consensus       167 ~~V~~~~dl~~~p~~~~~~~~~~P~~~~~~~p~~~~p~~~~~~k~~~~~c~~sG~v~l~v~lpr~gYvPGE~I~v~v~I~  246 (446)
                      ..++.+++..  |...                  ..+-..+.+|.|   ||++|+|+|+++|||.||+|||+|+|++.|+
T Consensus       181 ~L~Irklq~a--P~~~------------------~~~P~~e~~K~F---~~ssGpl~L~vsLdK~~Y~pGE~I~V~v~I~  237 (380)
T 3ugu_A          181 RLLIRKVQHA--PRDM------------------GPQPRAEASWQF---FMSDKPLRLAVSLSKEIYYHGEPIPVTVAVT  237 (380)
T ss_dssp             EEEEEEEEBC--CSCC------------------CCCCEEEEEEEC---TTCCCEEEEEEEESCSEEETTCCEEEEEEEE
T ss_pred             EEeeeecccC--Cccc------------------CCCCcceEEEEe---EecCCCEEEEEEeCCccCcCCCEEEEEEEEE
Confidence            4455555443  2110                  112256777776   5799999999999999999999999999999


Q ss_pred             cCCcceeEeeeceeeecc
Q psy10650        247 NRSKITVKSTKAALTEQP  264 (446)
Q Consensus       247 N~S~k~ik~i~~~L~q~~  264 (446)
                      |+|++.|+.|+++|.|..
T Consensus       238 N~Ssk~Vk~Ikv~L~Q~~  255 (380)
T 3ugu_A          238 NSTEKTVKKIKVLVEQVT  255 (380)
T ss_dssp             ECSSSCEEEEEEEEEEEE
T ss_pred             cCCCCeEeEEEEEEEEEE
Confidence            999999999999999863

>2r51_A Vacuolar protein sorting-associated protein 26B; retromer, fibronectin III, arrestin domain, membrane, phosphorylation, protein transport; 2.10A {Mus musculus} PDB: 3lh9_A 3lh8_A 3lha_A

Probab=99.84  E-value=3.5e-19  Score=178.77  Aligned_cols=195  Identities=14%  Similarity=0.166  Sum_probs=136.2

Q ss_pred             eecCeEEEEeEEEecCCCCCceEEeecccEEEEEEEEEecCCCCCccceEEEEEEeccccCCCCCccceeeeccccccCC
Q psy10650        116 LLSPGIHSFPFKLGLPLGLPSTFLGKHGWVQYFCKAALREPTGYTHKNQQVFIIMSPIDLNLEPPILSVFIIMSPIDLNL  195 (446)
Q Consensus       116 ~l~~G~~~~pf~f~LP~~lP~Sf~~~~g~IrY~i~~~i~~p~~~d~~~~~~~~V~~~~dl~~~p~~~~~~~~~~P~~~~~  195 (446)
                      .|++|.| |||+|.||..+|.||+|.+|.|||.|+++|+|||. |....+.|.|....   ..                 
T Consensus       102 ~L~~G~~-fpF~F~lp~~l~eSy~G~~g~IrY~vkv~i~Rp~~-di~~~~eF~V~~~~---~~-----------------  159 (340)
T 2r51_A          102 EITQSQA-FDFEFTHVEKPYESYTGQNVKLRYFLRATISRRLN-DVVKEMDIVVHTLS---TY-----------------  159 (340)
T ss_dssp             EECSCEE-EEEEECSBCCCSCCEECSSEEEEEEEEEEECCSSC-CEEEEEEEEEECCC---CC-----------------
T ss_pred             ccCCCcE-EeeEeCCCCCCCcCeEeeeEEEEEEEEEEEEecCC-CceEEEEEEEEeCC---CC-----------------
Confidence            6888999 99999999999999999999999999999999998 88888999988742   11                 


Q ss_pred             CCCCCCCCCceeEeEeEeeeeecCCcEEEEEEEcccccccCceEEEEEEEEcCCcceeEeeeceeeeccccccccceeee
Q psy10650        196 EPPILSQPFDCEIEHKLGVACVSSGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALTEQPFDCEIEHKLGV  275 (446)
Q Consensus       196 ~~p~~~~p~~~~~~k~~~~~c~~sG~v~l~v~lpr~gYvPGE~I~v~v~I~N~S~k~ik~i~~~L~q~~~~~~~~~~~~~  275 (446)
                        |.+..|+..+    +|+.+|    +++++.+++++|+|||.|...+.+. .|+..|+.+.++|               
T Consensus       160 --p~~~~pIk~E----vgi~~c----l~Ie~~~~ks~y~lgd~I~G~I~f~-~s~i~Ik~iel~L---------------  213 (340)
T 2r51_A          160 --PELNSSIKME----VGIEDC----LHIEFEYNKSKYHLKDVIVGKIYFL-LVRIKIKHMEIDI---------------  213 (340)
T ss_dssp             --CCCCCCEEEE----EEETTT----EEEEEEESCSEEETTCEEEEEEEEE-EECSCEEEEEEEE---------------
T ss_pred             --CccCCCEecc----ccCCce----EEEEEEECcccccCCCeEEEEEEEE-EeeceeEEEEEEE---------------
Confidence              1122344433    244333    6777777777777777666655555 4445555555555               


Q ss_pred             eEecCCceeEEEEeccceecCCCeEEEEEEEeeccceeeeeeEEEEEEEEEEEeccceeeeeEEEEeee--ecCccCCCC
Q psy10650        276 ACVSSGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALTETIQYLARNKVLESETRELASL--TRGKIKPGE  353 (446)
Q Consensus       276 ~c~~~G~v~l~~sl~r~gY~pGE~I~i~v~I~N~S~~~I~~i~v~Liq~v~y~a~~~~~~~~~~~V~~~--~~~~V~~g~  353 (446)
                                                                    +|..+|.+.... ..+..+|++.  +.+.+..|.
T Consensus       214 ----------------------------------------------iR~Et~~~~~~~-~~e~~~i~k~eImdG~p~rge  246 (340)
T 2r51_A          214 ----------------------------------------------IKRETTGTGPNV-YHENDTIAKYEIMDGAPVRGE  246 (340)
T ss_dssp             ----------------------------------------------EEEEEEEETTEE-EEEEEEEEEEEEEESCCCTTC
T ss_pred             ----------------------------------------------EEEEEEecCCCe-eEEEEEEEEEEEecCCccCCC
Confidence                                                          444444433221 1233344432  234444555


Q ss_pred             ccceeeeeEecCC--CCCCCcCCCceEEEEEEEEEEEecCCCCCCeEEEecEEEEeec
Q psy10650        354 RDDWTNQQLYVPP--LPPTNLRGCHLIKIQYDVFFIVDPKSIEKPVKLQLPIMLATYP  409 (446)
Q Consensus       354 ~~~~~~~~L~IP~--i~PT~l~~~~iI~V~Y~L~V~v~~~~~~~~l~v~lPIiIGtvP  409 (446)
                      ..   ...|.+|+  ++||....|++|+|+|+|.|.+...+. ..+...+||+|+-..
T Consensus       247 ~I---Pirl~Lp~~~l~PT~~~~~~~fsV~Y~Lnlvl~~e~~-~~~~kq~pI~L~R~~  300 (340)
T 2r51_A          247 SI---PIRLFLAGYELTPTMRDINKKFSVRYYLNLVLIDEEE-RRYFKQQEVVLWRKG  300 (340)
T ss_dssp             EE---EEEEEGGGSCCCCCEEEETTTEEEEEEEEEEEEETTC-CEEEEEEEEEEECCC
T ss_pred             EE---EEEEECCCCCCCCCccccCCeEEEEEEEEEEEEeCCC-cEEEEEeeEEEEECC
Confidence            43   34677887  899974449999999999999988875 589999999999865

>2fau_A Vacuolar protein sorting 26; arrestin, retromer, protein transport; HET: CAF; 2.10A {Homo sapiens}

Probab=99.69  E-value=5.8e-15  Score=148.11  Aligned_cols=179  Identities=14%  Similarity=0.186  Sum_probs=121.9

Q ss_pred             eecCeEEEEeEEEecCCCCCceEEeecccEEEEEEEEEecCCCCCccceEEEEEEeccccCCCCCccceeeeccccccCC
Q psy10650        116 LLSPGIHSFPFKLGLPLGLPSTFLGKHGWVQYFCKAALREPTGYTHKNQQVFIIMSPIDLNLEPPILSVFIIMSPIDLNL  195 (446)
Q Consensus       116 ~l~~G~~~~pf~f~LP~~lP~Sf~~~~g~IrY~i~~~i~~p~~~d~~~~~~~~V~~~~dl~~~p~~~~~~~~~~P~~~~~  195 (446)
                      .|++| |.|||.|.+|..++.||+|.+|.|||.|+++|+|+|. |......|.|....+.   |.               
T Consensus       102 ~L~~g-~~fpF~F~~~~~~~eSy~G~~~~IrY~vrv~i~R~~~-di~~~~eF~V~~~~~~---p~---------------  161 (341)
T 2fau_A          102 ELTQS-RSYDFEFMQVEKPYESYIGANVRLRYFLKVTIVRRLT-DLVKEYDLIVHQLATY---PD---------------  161 (341)
T ss_dssp             EECSC-EEEEEEECSCCCCSCCEECSSEEEEEEEEEEECCSSS-CEEEEEEEEECCCBCC---CC---------------
T ss_pred             ccCCC-cEEeeEeCCCCCCCcceEeeEEEEEEEEEEEEEecCc-ceeEEEEEEEEeCCCC---CC---------------
Confidence            57889 9999999998889999999999999999999999998 8888888988863211   11               


Q ss_pred             CCCCCCCCCceeEeEeEeeeeecCCcEEEEEEEcccccccCceEEEEEEEEcCCcceeEeeeceeeeccccccccceeee
Q psy10650        196 EPPILSQPFDCEIEHKLGVACVSSGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALTEQPFDCEIEHKLGV  275 (446)
Q Consensus       196 ~~p~~~~p~~~~~~k~~~~~c~~sG~v~l~v~lpr~gYvPGE~I~v~v~I~N~S~k~ik~i~~~L~q~~~~~~~~~~~~~  275 (446)
                          ...|+..+    ++    .+++                                                      
T Consensus       162 ----~~~pi~~e----vg----ied~------------------------------------------------------  175 (341)
T 2fau_A          162 ----VNNSIKME----VG----IEDX------------------------------------------------------  175 (341)
T ss_dssp             ----CCCCEEEE----EE----ETTT------------------------------------------------------
T ss_pred             ----CCCCeEEE----Ee----cccc------------------------------------------------------
Confidence                11232211    00    1222                                                      


Q ss_pred             eEecCCceeEEEEeccceecCCCeEEEEEEEeeccceeeeeeEEEEEEEEEEEeccceeeeeEEEEeeeec--CccCCCC
Q psy10650        276 ACVSSGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALTETIQYLARNKVLESETRELASLTR--GKIKPGE  353 (446)
Q Consensus       276 ~c~~~G~v~l~~sl~r~gY~pGE~I~i~v~I~N~S~~~I~~i~v~Liq~v~y~a~~~~~~~~~~~V~~~~~--~~V~~g~  353 (446)
                             +++.+.+++++|.+||.|...+.+. .++..|+.+++.|+|..+|.+..... .+..++.+...  +.+..|.
T Consensus       176 -------L~ieF~~~ks~y~l~d~I~G~I~f~-~s~i~Ik~iel~LiR~Et~~~~~~~~-~e~~~i~k~eImDG~p~rge  246 (341)
T 2fau_A          176 -------LHIEFEYNKSKYHLKDVIVGKIYFL-LVRIKIQHMELQLIKKEITGIGPSTT-TETETIAKYEIMDGAPVKGE  246 (341)
T ss_dssp             -------EEEEEEESCSEEETTCEEEEEEEEE-EECSCEEEEEEEEEEEEEESCGGGCE-EEEEEEEEEECCCC------
T ss_pred             -------EEEEEEEccccccCCCeEEEEEEEE-EeccceEEEEEEEEEEEEEcCCCCee-eEEEEEEEEEEeCCCccCCC
Confidence                   3444556666666666665555555 45667889999999999997765432 34455655432  4444454


Q ss_pred             ccceeeeeEecCC--CCCCCcCCCceEEEEEEEEEEEecCC
Q psy10650        354 RDDWTNQQLYVPP--LPPTNLRGCHLIKIQYDVFFIVDPKS  392 (446)
Q Consensus       354 ~~~~~~~~L~IP~--i~PT~l~~~~iI~V~Y~L~V~v~~~~  392 (446)
                      ..   ...|.||.  ++||....|++|+|+|+|.|.+...+
T Consensus       247 ~I---Pirl~Lp~~~l~PT~~~~~~~fsV~Y~Lnlvlvde~  284 (341)
T 2fau_A          247 SI---PIRLFLAGYDPTPTMRDVNKKFSVRYFLNLVLVDEE  284 (341)
T ss_dssp             CE---EEEEESTTTCCCCCEEEEETTEEEEEEEEEEEEETT
T ss_pred             EE---EEEEEcCCCCCCCcchhcCCeEEEEEEEEEEEEeCC
Confidence            43   45789997  89996333999999999999996654

>2fau_A Vacuolar protein sorting 26; arrestin, retromer, protein transport; HET: CAF; 2.10A {Homo sapiens}

Probab=99.06  E-value=7e-09  Score=104.01  Aligned_cols=153  Identities=12%  Similarity=0.144  Sum_probs=93.1

Q ss_pred             ccCCeeeEeeeEeecCCCCCCccccCCCeeecCeEEEEeEEEecCCCCCceEEeecccEEEEEEEEEecCCCC-CccceE
Q psy10650         87 LLSPGIHSFPFKLGLPLGLPSTFLGQAPVLLSPGIHSFPFKLGLPLGLPSTFLGKHGWVQYFCKAALREPTGY-THKNQQ  165 (446)
Q Consensus        87 ~Lp~G~H~fpF~~~LP~~LPsSfeg~~g~~l~~G~~~~pf~f~LP~~lP~Sf~~~~g~IrY~i~~~i~~p~~~-d~~~~~  165 (446)
                      .|++| |+|||.|++|..+|.||+|.+      |.++|-.++.|.+...        .+.......+...... +..   
T Consensus       102 ~L~~g-~~fpF~F~~~~~~~eSy~G~~------~~IrY~vrv~i~R~~~--------di~~~~eF~V~~~~~~p~~~---  163 (341)
T 2fau_A          102 ELTQS-RSYDFEFMQVEKPYESYIGAN------VRLRYFLKVTIVRRLT--------DLVKEYDLIVHQLATYPDVN---  163 (341)
T ss_dssp             EECSC-EEEEEEECSCCCCSCCEECSS------EEEEEEEEEEECCSSS--------CEEEEEEEEECCCBCCCCCC---
T ss_pred             ccCCC-cEEeeEeCCCCCCCcceEeeE------EEEEEEEEEEEEecCc--------ceeEEEEEEEEeCCCCCCCC---
Confidence            58999 999999999988999999999      8888988888876331        2334444444432211 111   


Q ss_pred             EEEEEeccccCCCCCccceeeeccccccCCCCCCCCCCCceeEeEeEeeeeecCCcEEEEEEEcccccccCceEEEEEEE
Q psy10650        166 VFIIMSPIDLNLEPPILSVFIIMSPIDLNLEPPILSQPFDCEIEHKLGVACVSSGPVLCRVSLDRGGYVPGETIIINATV  245 (446)
Q Consensus       166 ~~~V~~~~dl~~~p~~~~~~~~~~P~~~~~~~p~~~~p~~~~~~k~~~~~c~~sG~v~l~v~lpr~gYvPGE~I~v~v~I  245 (446)
                           .++.++..           |          ..++..                  ++.+++++|.+||.|...+.+
T Consensus       164 -----~pi~~evg-----------i----------ed~L~i------------------eF~~~ks~y~l~d~I~G~I~f  199 (341)
T 2fau_A          164 -----NSIKMEVG-----------I----------EDXLHI------------------EFEYNKSKYHLKDVIVGKIYF  199 (341)
T ss_dssp             -----CCEEEEEE-----------E----------TTTEEE------------------EEEESCSEEETTCEEEEEEEE
T ss_pred             -----CCeEEEEe-----------c----------cccEEE------------------EEEEccccccCCCeEEEEEEE
Confidence                 12222110           0          012211                  234899999999999998888


Q ss_pred             EcCCcceeEeeeceeeec-cccccccceeeeeEecCCceeEEEEeccceecCCCeEEEEEEEee
Q psy10650        246 YNRSKITVKSTKAALTEQ-PFDCEIEHKLGVACVSSGPVLCRVSLDRGGYVPGETIIINATVYN  308 (446)
Q Consensus       246 ~N~S~k~ik~i~~~L~q~-~~~~~~~~~~~~~c~~~G~v~l~~sl~r~gY~pGE~I~i~v~I~N  308 (446)
                      . .|+..|+.|.++|+++ +|.+......      .-..-...++--.+-+.||.|++.+.+-.
T Consensus       200 ~-~s~i~Ik~iel~LiR~Et~~~~~~~~~------e~~~i~k~eImDG~p~rge~IPirl~Lp~  256 (341)
T 2fau_A          200 L-LVRIKIQHMELQLIKKEITGIGPSTTT------ETETIAKYEIMDGAPVKGESIPIRLFLAG  256 (341)
T ss_dssp             E-EECSCEEEEEEEEEEEEEESCGGGCEE------EEEEEEEEECCCC------CEEEEEESTT
T ss_pred             E-EeccceEEEEEEEEEEEEEcCCCCeee------EEEEEEEEEEeCCCccCCCEEEEEEEcCC
Confidence            8 6889999999999997 3332211000      00111234444466788999999877653

>1suj_A CONE arrestin; sensory transduction, signaling protein; 2.38A {Ambystoma tigrinum}

Probab=98.78  E-value=2.9e-08  Score=101.16  Aligned_cols=52  Identities=27%  Similarity=0.339  Sum_probs=49.5

Q ss_pred             eEecCCceeEEEEeccceecCCCeEEEEEEEeeccceeeeeeEEEEEEEEEE
Q psy10650        276 ACVSSGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALTETIQY  327 (446)
Q Consensus       276 ~c~~~G~v~l~~sl~r~gY~pGE~I~i~v~I~N~S~~~I~~i~v~Liq~v~y  327 (446)
                      +|+.+|+++|++++|+.+|+|||+|+|++.|+|.|++.|+.|+++|+|.++|
T Consensus       187 f~~ssGpl~l~vsLdK~~Y~pGE~I~V~v~I~N~Ssk~Vk~Ikv~L~Q~~~v  238 (392)
T 1suj_A          187 FMLSDRPLHLEASLDKEIYYHGEPINVNVKINNTTGKIVKKIKIIVEQVTDV  238 (392)
T ss_dssp             EEETTEEEEEEEEESCSEEETTCCEEEEEEEEECSSSEEEEEEEEEEEEEEE
T ss_pred             eEecCCCEEEEEEeCCccccCCCEEEEEEEEECCCCCcEeEEEEEEEEEEEE
Confidence            6789999999999999999999999999999999999999999999998754

>3ugu_A S-arrestin; arrestin fold, signal termination, GPCR, outer segment, SIGN protein; 1.85A {Bos taurus} PDB: 3ugx_A 1cf1_A 1ayr_A

Probab=98.59  E-value=2.2e-07  Score=93.48  Aligned_cols=126  Identities=21%  Similarity=0.327  Sum_probs=96.6

Q ss_pred             EecCCceeEEEEeccceecCCCeEEEEEEEeeccceeeeeeEEEEEEEEEEEeccceeeeeEEEEeeee-cCccCCCCcc
Q psy10650        277 CVSSGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALTETIQYLARNKVLESETRELASLT-RGKIKPGERD  355 (446)
Q Consensus       277 c~~~G~v~l~~sl~r~gY~pGE~I~i~v~I~N~S~~~I~~i~v~Liq~v~y~a~~~~~~~~~~~V~~~~-~~~V~~g~~~  355 (446)
                      |+.+|++++++++|+.+|+|||+|+|++.|+|.|+++|+.|++.|.|.++|.+.....  ...+|++.+ ..+|.||++ 
T Consensus       207 ~~ssGpl~L~vsLdK~~Y~pGE~I~V~v~I~N~Ssk~Vk~Ikv~L~Q~~~v~l~s~~~--y~~~Va~~E~~epV~pgst-  283 (380)
T 3ugu_A          207 FMSDKPLRLAVSLSKEIYYHGEPIPVTVAVTNSTEKTVKKIKVLVEQVTNVVLYSSDY--YIKTVAAEEAQEKVPPNSS-  283 (380)
T ss_dssp             TTCCCEEEEEEEESCSEEETTCCEEEEEEEEECSSSCEEEEEEEEEEEEEECSSSCCE--EEEEEEEEECSCCBCTTEE-
T ss_pred             EecCCCEEEEEEeCCccCcCCCEEEEEEEEEcCCCCeEeEEEEEEEEEEEEEEecCCe--EEEEEEEeccCCcCCCCCe-
Confidence            4589999999999999999999999999999999999999999999999998753322  234567666 458999976 


Q ss_pred             ceeeeeE-ecCCC----------------------CCCCc-CCC---ce--EEEEEEEEEEEecCCC-----CCCeEEEe
Q psy10650        356 DWTNQQL-YVPPL----------------------PPTNL-RGC---HL--IKIQYDVFFIVDPKSI-----EKPVKLQL  401 (446)
Q Consensus       356 ~~~~~~L-~IP~i----------------------~PT~l-~~~---~i--I~V~Y~L~V~v~~~~~-----~~~l~v~l  401 (446)
                       | ...+ .+|.+                      +.|++ ..+   .+  |-|+|.++|.+.++++     ..++.+++
T Consensus       284 -~-~k~~~l~P~l~~n~~krglALdG~lk~edtnLASsT~~~~~~~ke~~GI~VsY~VkVkl~v~~lgg~~~~sdv~~el  361 (380)
T 3ugu_A          284 -L-TKTLTLVPLLANNRERRGIALDGKIKHEDTNLASSTIIKEGIDKTVMGILVSYQIKVKLTVSGLLGELTSSEVATEV  361 (380)
T ss_dssp             -E-EEEEEECCCGGGCSCCTTSCBSSCTTCTTCCBCCCCCCCTTCCGGGGSEEEEEEEEEEEEECCCTTCSSCEEEEEEE
T ss_pred             -E-EeeEEEEEecccCCceeeEEecceeccCCCcccceeEecCCCCCcceEEEEEEEEEEEEEEecccCCccccceEEEe
Confidence             5 3444 55532                      22221 111   11  8899999999988742     35899999


Q ss_pred             cEEEEe
Q psy10650        402 PIMLAT  407 (446)
Q Consensus       402 PIiIGt  407 (446)
                      |+++..
T Consensus       362 Pf~Lmh  367 (380)
T 3ugu_A          362 PFRLMH  367 (380)
T ss_dssp             EEEEEB
T ss_pred             cccccC
Confidence            998876

>1g4m_A Beta-arrestin1; sensory transduction, alternative splicing, signaling protein; 1.90A {Bos taurus} SCOP: b.1.18.11 b.1.18.11 PDB: 1g4r_A 3gd1_C 1jsy_A 1zsh_A* 2wtr_A 2wtr_B 3gc3_A 3p2d_A

Probab=97.47  E-value=9e-05  Score=75.81  Aligned_cols=53  Identities=30%  Similarity=0.355  Sum_probs=49.3

Q ss_pred             eeEecCCceeEEEEeccceecCCCeEEEEEEEeeccceeeeeeEEEEEEEEEE
Q psy10650        275 VACVSSGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALTETIQY  327 (446)
Q Consensus       275 ~~c~~~G~v~l~~sl~r~gY~pGE~I~i~v~I~N~S~~~I~~i~v~Liq~v~y  327 (446)
                      .+||.+|+++|++++|+.+|+|||+|.+++.|+|.|++.|+.++++|+|.+.+
T Consensus       189 ~fc~~sG~l~l~~sldk~~Y~pGE~I~v~v~I~N~S~k~Vk~Ikv~L~Q~~~~  241 (393)
T 1g4m_A          189 QFLMSDKPLHLEASLDKEIYYHGEPISVNVHVTNNTNKTVKKIKISVRQYADI  241 (393)
T ss_dssp             ECBSSSSCEEEEEEESCSEEETTCCEEEEEEEEECSSCCEEEEEEEEEEEEEE
T ss_pred             EEEEcCCCEEEEEEECCceEcCCCEEEEEEEEEcCCCCEEeEEEEEEEEEEEE
Confidence            45688999999999999999999999999999999999999999999997643

>2r51_A Vacuolar protein sorting-associated protein 26B; retromer, fibronectin III, arrestin domain, membrane, phosphorylation, protein transport; 2.10A {Mus musculus} PDB: 3lh9_A 3lh8_A 3lha_A

Probab=97.18  E-value=0.014  Score=58.35  Aligned_cols=140  Identities=14%  Similarity=0.180  Sum_probs=92.4

Q ss_pred             CceEEEEEEEEcCCcceeEeeeceeeeccccccccceeeeeEecCCceeEEEEeccceecCCCeEEEEEEEeec---cce
Q psy10650        236 GETIIINATVYNRSKITVKSTKAALTEQPFDCEIEHKLGVACVSSGPVLCRVSLDRGGYVPGETIIINATVYNR---SKI  312 (446)
Q Consensus       236 GE~I~v~v~I~N~S~k~ik~i~~~L~q~~~~~~~~~~~~~~c~~~G~v~l~~sl~r~gY~pGE~I~i~v~I~N~---S~~  312 (446)
                      ||.+.|.+.+++..++....++..                    .|...   .  --.|.+||+|.=.+.|...   ...
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~---~--~pvY~~GE~VsG~V~I~~~~~~k~l   65 (340)
T 2r51_A           11 GQSVEVEILLNDAESRKRAEHKTE--------------------DGKKE---K--YFLFYDGETVSGKVSLSLKNPNKRL   65 (340)
T ss_dssp             --CEEEEEEETTTTTSCEEEEECT--------------------TSCEE---E--EEEEETBCCEEEEEEEEESSTTSCE
T ss_pred             CCCceEEEEECCCCccceEEeecC--------------------CCcEe---e--cCcCCCCCEEEEEEEEEECCCCCee
Confidence            788888888888776644332211                    12211   1  1258999999999999887   668


Q ss_pred             eeeeeEEEEEEEEEEEec-cceee--eeEEEEeeeecCccCCCCccceeeeeEecCCCCCCCcCCCceEEEEEEEEEEEe
Q psy10650        313 TVKSTKAALTETIQYLAR-NKVLE--SETRELASLTRGKIKPGERDDWTNQQLYVPPLPPTNLRGCHLIKIQYDVFFIVD  389 (446)
Q Consensus       313 ~I~~i~v~Liq~v~y~a~-~~~~~--~~~~~V~~~~~~~V~~g~~~~~~~~~L~IP~i~PT~l~~~~iI~V~Y~L~V~v~  389 (446)
                      ..++|++.+...+...-. +....  .....++  ..+.+.+|.+  | ...|.+|...|+++ .+..+.|.|.|+|.++
T Consensus        66 ~h~GIki~~~G~~e~~~~~~~~~~f~~~~~eL~--~pG~L~~G~~--f-pF~F~lp~~l~eSy-~G~~g~IrY~vkv~i~  139 (340)
T 2r51_A           66 EHQGIKIEFIGQIELYYDRGNHHEFVSLVKDLA--RPGEITQSQA--F-DFEFTHVEKPYESY-TGQNVKLRYFLRATIS  139 (340)
T ss_dssp             EESCEEEEEEEEEEEGGGTTCCEEEEEEEEEEE--CSEEECSCEE--E-EEEECSBCCCSCCE-ECSSEEEEEEEEEEEC
T ss_pred             EEEEEEEEEEEEEEEEecCCCcEEEEEEEEEec--CCCccCCCcE--E-eeEeCCCCCCCcCe-EeeeEEEEEEEEEEEE
Confidence            889999999986654222 11110  1111121  1235666655  6 77888898666554 6888999999999998


Q ss_pred             cCCCCCCeEEEecEEEEee
Q psy10650        390 PKSIEKPVKLQLPIMLATY  408 (446)
Q Consensus       390 ~~~~~~~l~v~lPIiIGtv  408 (446)
                      -++.  ++....++++-+.
T Consensus       140 Rp~~--di~~~~eF~V~~~  156 (340)
T 2r51_A          140 RRLN--DVVKEMDIVVHTL  156 (340)
T ss_dssp             CSSC--CEEEEEEEEEECC
T ss_pred             ecCC--CceEEEEEEEEeC
Confidence            8864  8999999988874

>2p9r_A Alpha-2-M, alpha-2-macroglobulin; human alpha2-macroglobulin, Mg2 domain, X-RAY, signaling protein; 2.30A {Homo sapiens}

Probab=88.61  E-value=1.6  Score=34.97  Aligned_cols=30  Identities=20%  Similarity=0.313  Sum_probs=25.3

Q ss_pred             EEEEEcccccccCceEEEEEEEEcCCccee
Q psy10650        224 CRVSLDRGGYVPGETIIINATVYNRSKITV  253 (446)
Q Consensus       224 l~v~lpr~gYvPGE~I~v~v~I~N~S~k~i  253 (446)
                      +-+..||..|.|||+|.+.+-+-|...+.+
T Consensus         4 ~fi~tDr~iYrPGetV~~~~~~~~~~~~p~   33 (102)
T 2p9r_A            4 VFVQTDKSIYKPGQTVKFRVVSMDENFHPL   33 (102)
T ss_dssp             EEEEESCSEECTTCEEEEEEEEECGGGCBC
T ss_pred             EEEECCCcccCCCCEEEEEEEEECCCCcCC
Confidence            568899999999999999999888765544

>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}

Probab=81.53  E-value=5.2  Score=33.70  Aligned_cols=86  Identities=12%  Similarity=0.020  Sum_probs=56.7

Q ss_pred             cCCcEEEEEEEcccccccCceEEEEEEEEcCCcceeEeeeceeeeccccccccceeeeeEecCCceeEEEEeccceecCC
Q psy10650        218 SSGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALTEQPFDCEIEHKLGVACVSSGPVLCRVSLDRGGYVPG  297 (446)
Q Consensus       218 ~sG~v~l~v~lpr~gYvPGE~I~v~v~I~N~S~k~ik~i~~~L~q~~~~~~~~~~~~~~c~~~G~v~l~~sl~r~gY~pG  297 (446)
                      ..|.|.+++.-+.    +|+.+.+.+.|.|.++..+.--.-+=++--|.-....--.+|-++.|.+-.. .+....+.||
T Consensus         3 ~~~~l~~~v~~~~----~g~~v~~~ltv~N~s~~~v~l~f~Sgq~~Df~v~d~~G~~VwrwS~~~~FtQ-a~~~~tl~pG   77 (120)
T 3isy_A            3 ENQEVVLSIDAIQ----EPEQIKFNMSLKNQSERAIEFQFSTGQKFELVVYDSEHKERYRYSKEKMFTQ-AFQNLTLESG   77 (120)
T ss_dssp             -CCSEEEEEEEEE----CSSCEEEEEEEEECSSSCEEEEESSSCCEEEEEECTTCCEEEETTTTCCCCC-CCEEEEECTT
T ss_pred             cccEEEEEEeecc----CCCeEEEEEEEEcCCCCcEEEEeCCCCEEEEEEECCCCCEEEEccccchhhh-hhceEEECCC
Confidence            4577888888777    8899999999999999876533222222011100001124566677777777 4556678899


Q ss_pred             CeEEEEEEEee
Q psy10650        298 ETIIINATVYN  308 (446)
Q Consensus       298 E~I~i~v~I~N  308 (446)
                      |.......+.+
T Consensus        78 E~~~f~~~w~~   88 (120)
T 3isy_A           78 ETYDFSDVWKE   88 (120)
T ss_dssp             CEEEEEEEESS
T ss_pred             CEEEEEEEeCC
Confidence            99999998884

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	446
d1g4ma2	218	b.1.18.11 (A:176-393) Arrestin {Cow (Bos taurus),	2e-17
d1cf1a2	211	b.1.18.11 (A:183-393) Arrestin {Cow (Bos taurus),	1e-16

>d1g4ma2 b.1.18.11 (A:176-393) Arrestin {Cow (Bos taurus), beta-arrestin 1 [TaxId: 9913]} Length = 218

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Arrestin/Vps26-like
domain: Arrestin
species: Cow (Bos taurus), beta-arrestin 1 [TaxId: 9913]

 Score = 79.0 bits (194), Expect = 2e-17
 Identities = 34/195 (17%), Positives = 56/195 (28%), Gaps = 32/195 (16%)

Query: 277 CVSSGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALTETIQYLA------R 330
            +S  P+    SLD+  Y  GE I +N  V N +  TVK  K ++ +            +
Sbjct: 16  LMSDKPLHLEASLDKEIYYHGEPISVNVHVTNNTNKTVKKIKISVRQYADICLFNTAQYK 75

Query: 331 NKVLESETREL--ASLTRGKIK-----------------PGERDDWTNQQLYVPPLPPTN 371
             V   E  +    S T  K+                   G+             L    
Sbjct: 76  CPVAMEEADDTVAPSSTFCKVYTLTPFLANNREKRGLALDGKLKHEDTNLASSTLLREGA 135

Query: 372 LRGCHLIKIQYDV-------FFIVDPKSIEKPVKLQLPIMLATYPFRQDDGSLQRKSSGT 424
            R    I + Y V          +        V ++LP  L     +++    +     T
Sbjct: 136 NREILGIIVSYKVKVKLVVSRGGLLGDLASSDVAVELPFTLMHPKPKEEPPHREVPEHET 195

Query: 425 HYPTTLPIFRPWLEE 439
              T L       ++
Sbjct: 196 PVDTNLIELDTNDDD 210

>d1cf1a2 b.1.18.11 (A:183-393) Arrestin {Cow (Bos taurus), visual arrestin [TaxId: 9913]} Length = 211

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Arrestin/Vps26-like
domain: Arrestin
species: Cow (Bos taurus), visual arrestin [TaxId: 9913]

 Score = 76.2 bits (187), Expect = 1e-16
 Identities = 27/161 (16%), Positives = 49/161 (30%), Gaps = 32/161 (19%)

Query: 277 CVSSGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALTETIQYLA------R 330
            +S  P+   VSL +  Y  GE I +   V N ++ TVK  K  + +    +        
Sbjct: 15  FMSDKPLRLAVSLSKEIYYHGEPIPVTVAVTNSTEKTVKKIKVLVEQVTNVVLYSSDYYI 74

Query: 331 NKVLESETRE----------------LASLTRGK----IKPGERDDWTNQQLYVPPLPPT 370
             V   E +E                L +  R +    +    + + TN       +   
Sbjct: 75  KTVAAEEAQEKVPPNSSLTKTLTLVPLLANNRERRGIALDGKIKHEDTNLAS-STIIKEG 133

Query: 371 NLRGCHLIKIQYDVFFIVDPKS-----IEKPVKLQLPIMLA 406
             +    I + Y +   +             V  ++P  L 
Sbjct: 134 IDKTVMGILVSYQIKVKLTVSGLLGELTSSEVATEVPFRLM 174

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	446
d1g4ma2	218	Arrestin {Cow (Bos taurus), beta-arrestin 1 [TaxId	99.79
d1cf1a2	211	Arrestin {Cow (Bos taurus), visual arrestin [TaxId	99.67
d1g4ma2	218	Arrestin {Cow (Bos taurus), beta-arrestin 1 [TaxId	99.25
d1cf1a2	211	Arrestin {Cow (Bos taurus), visual arrestin [TaxId	99.07
d1w8oa1	103	Sialidase, "linker" domain {Micromonospora viridif	92.34
d1cf1a1	173	Arrestin {Cow (Bos taurus), visual arrestin [TaxId	86.0
d1g4ma1	171	Arrestin {Cow (Bos taurus), beta-arrestin 1 [TaxId	83.11
d1so9a_	131	Cytochrome C oxidase assembly protein CtaG {Rhizob	80.07

>d1g4ma2 b.1.18.11 (A:176-393) Arrestin {Cow (Bos taurus), beta-arrestin 1 [TaxId: 9913]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Arrestin/Vps26-like
domain: Arrestin
species: Cow (Bos taurus), beta-arrestin 1 [TaxId: 9913]

Probab=99.79  E-value=4.9e-19  Score=165.88  Aligned_cols=135  Identities=20%  Similarity=0.130  Sum_probs=101.0

Q ss_pred             eEecCCceeEEEEeccceecCCCeEEEEEEEeeccceeeeeeEEEEEEEEEEEeccceeeeeEEEEeeee-cCccCCCCc
Q psy10650        276 ACVSSGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALTETIQYLARNKVLESETRELASLT-RGKIKPGER  354 (446)
Q Consensus       276 ~c~~~G~v~l~~sl~r~gY~pGE~I~i~v~I~N~S~~~I~~i~v~Liq~v~y~a~~~~~~~~~~~V~~~~-~~~V~~g~~  354 (446)
                      ||+.+|+++|+|++||.||+|||+|+|++.|+|.|++.|+.|+++|+|.++|.+.+....  .+.++... ...+.+|++
T Consensus        15 f~~~sg~~~l~~~l~~~~y~~Ge~I~v~v~i~N~s~~~v~~i~~~l~q~~~~~~~~~~~~--~~~v~~~~~~~~~~~~st   92 (218)
T d1g4ma2          15 FLMSDKPLHLEASLDKEIYYHGEPISVNVHVTNNTNKTVKKIKISVRQYADICLFNTAQY--KCPVAMEEADDTVAPSST   92 (218)
T ss_dssp             CBSSSSCEEEEEEESCSEEETTCCEEEEEEEEECSSCCEEEEEEEEEEEEEECSSBCEEE--EEEEEEEEECCCBCTTEE
T ss_pred             eEeeCCcEEEEEEECCCeEcCCCEEEEEEEEECCCCCEEeeEEEEEEEEEEEEEecCCcE--EEEEEEEeeccccCCCcc
Confidence            567899999999999999999999999999999999999999999999999999866542  22332221 122222221


Q ss_pred             --------------------------cceeeeeEecCCCCCCCcCCCceEEEEEEEEEEEecCCCCCCeEEEecEEEEee
Q psy10650        355 --------------------------DDWTNQQLYVPPLPPTNLRGCHLIKIQYDVFFIVDPKSIEKPVKLQLPIMLATY  408 (446)
Q Consensus       355 --------------------------~~~~~~~L~IP~i~PT~l~~~~iI~V~Y~L~V~v~~~~~~~~l~v~lPIiIGtv  408 (446)
                                                ..+.+..+.+|.++|+++..|.+|.|+|.|+|.+.+++++.+..+.+|++||++
T Consensus        93 ~~k~~~l~~~~~~n~~~~~ial~~~~~~~~~~l~~~p~~~~~~~~~~~~I~V~Y~lkV~~~v~~~~~~~~~~~~~v~~~l  172 (218)
T d1g4ma2          93 FCKVYTLTPFLANNREKRGLALDGKLKHEDTNLASSTLLREGANREILGIIVSYKVKVKLVVSRGGLLGDLASSDVAVEL  172 (218)
T ss_dssp             EEEEEEECCCGGGTTTCSSEEESSCTTSTTCCBCCCCCCCTTCCSGGGSEEEEEEEEEEEEECCC--------CEEEEEE
T ss_pred             eEeEEEecccccccceeeeEecCcccceeeccccccccCCCCccccceeEEEEEEEEEEEEecCCcccCceecCceEEEE
Confidence                                      122255677888888877778999999999999999988788889999999999


Q ss_pred             cCCC
Q psy10650        409 PFRQ  412 (446)
Q Consensus       409 Pl~~  412 (446)
                      |+..
T Consensus       173 P~~l  176 (218)
T d1g4ma2         173 PFTL  176 (218)
T ss_dssp             EEEE
T ss_pred             Ccee
Confidence            9874

>d1cf1a2 b.1.18.11 (A:183-393) Arrestin {Cow (Bos taurus), visual arrestin [TaxId: 9913]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Arrestin/Vps26-like
domain: Arrestin
species: Cow (Bos taurus), visual arrestin [TaxId: 9913]

Probab=99.67  E-value=7.4e-16  Score=143.12  Aligned_cols=130  Identities=18%  Similarity=0.184  Sum_probs=97.7

Q ss_pred             eEecCCceeEEEEeccceecCCCeEEEEEEEeeccceeeeeeEEEEEEEEEEEeccceeeeeEEEEeeee-cCccCCCCc
Q psy10650        276 ACVSSGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALTETIQYLARNKVLESETRELASLT-RGKIKPGER  354 (446)
Q Consensus       276 ~c~~~G~v~l~~sl~r~gY~pGE~I~i~v~I~N~S~~~I~~i~v~Liq~v~y~a~~~~~~~~~~~V~~~~-~~~V~~g~~  354 (446)
                      ||+.+|+++|+|++||.+|+|||+|.|++.|+|.|++.|+.|+++|+|+++|.+.....  ..++|+... ..+++++++
T Consensus        14 f~~~sg~l~l~~~ldr~~Y~~Ge~I~v~v~i~N~s~~~v~~i~~~l~Q~~~~~~~s~~~--~~~~Va~~e~~~~~~~~~t   91 (211)
T d1cf1a2          14 FFMSDKPLRLAVSLSKEIYYHGEPIPVTVAVTNSTEKTVKKIKVLVEQVTNVVLYSSDY--YIKTVAAEEAQEKVPPNSS   91 (211)
T ss_dssp             EEETTEEEEEEEEESCSEEETTCCEEEEEEEEECSSSCEEEEEEEEEEEEEECSSSCCE--EEEEEEEEEESCCBCTTEE
T ss_pred             EEecCCCEEEEEEECCceEcCCCEEEEEEEEEcCCCcceeeEEEEEEEEEEEEEecCCc--eEEEEEEEEecCccCCCcc
Confidence            56889999999999999999999999999999999999999999999999999876543  234444433 334544433


Q ss_pred             cce-------------------------e-eeeEecCCCCCCCcCCCceEEEEEEEEEEEecCCC-----CCCeEEEecE
Q psy10650        355 DDW-------------------------T-NQQLYVPPLPPTNLRGCHLIKIQYDVFFIVDPKSI-----EKPVKLQLPI  403 (446)
Q Consensus       355 ~~~-------------------------~-~~~L~IP~i~PT~l~~~~iI~V~Y~L~V~v~~~~~-----~~~l~v~lPI  403 (446)
                      ...                         + ......|..+++....|.+|.|+|.|+|.+.++++     ..++.++|||
T Consensus        92 ~~k~~~l~p~~~~~k~~~~ialdg~~k~e~~~las~~~~~~~~~~~~~gI~VsY~vkV~l~~~~~~g~~~~sdv~veLP~  171 (211)
T d1cf1a2          92 LTKTLTLVPLLANNRERRGIALDGKIKHEDTNLASSTIIKEGIDKTVMGILVSYQIKVKLTVSGLLGELTSSEVATEVPF  171 (211)
T ss_dssp             EEEEEEECCCGGGCSCCSSSCBSSCTTBTTCCBCCCCCCCTTSCGGGGSEEEEEEEEEEEEECCCTTCSSCEEEEEEEEE
T ss_pred             eEEEEEeeeccccCccceeeeecccccccccccccccccCCCCCCccceEEEEEEEEEEEEecCCccccccCCceEEECe
Confidence            110                         0 11112233444445678899999999999998863     4689999999


Q ss_pred             EEEe
Q psy10650        404 MLAT  407 (446)
Q Consensus       404 iIGt  407 (446)
                      +|..
T Consensus       172 ~l~~  175 (211)
T d1cf1a2         172 RLMH  175 (211)
T ss_dssp             EEEB
T ss_pred             eeec
Confidence            9865

>d1g4ma2 b.1.18.11 (A:176-393) Arrestin {Cow (Bos taurus), beta-arrestin 1 [TaxId: 9913]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Arrestin/Vps26-like
domain: Arrestin
species: Cow (Bos taurus), beta-arrestin 1 [TaxId: 9913]

Probab=99.25  E-value=6.2e-11  Score=109.99  Aligned_cols=56  Identities=30%  Similarity=0.384  Sum_probs=51.2

Q ss_pred             eeEeEeEeeeeecCCcEEEEEEEcccccccCceEEEEEEEEcCCcceeEeeeceeeecc
Q psy10650        206 CEIEHKLGVACVSSGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALTEQP  264 (446)
Q Consensus       206 ~~~~k~~~~~c~~sG~v~l~v~lpr~gYvPGE~I~v~v~I~N~S~k~ik~i~~~L~q~~  264 (446)
                      .+.+|.   |||++|+|+|+++|||+||+|||+|+|++.|+|.|++.|+.|+++|.|..
T Consensus         9 ~e~~k~---f~~~sg~~~l~~~l~~~~y~~Ge~I~v~v~i~N~s~~~v~~i~~~l~q~~   64 (218)
T d1g4ma2           9 AETTRQ---FLMSDKPLHLEASLDKEIYYHGEPISVNVHVTNNTNKTVKKIKISVRQYA   64 (218)
T ss_dssp             CEEEEE---CBSSSSCEEEEEEESCSEEETTCCEEEEEEEEECSSCCEEEEEEEEEEEE
T ss_pred             ceeeee---eEeeCCcEEEEEEECCCeEcCCCEEEEEEEEECCCCCEEeeEEEEEEEEE
Confidence            455554   47899999999999999999999999999999999999999999999974

>d1cf1a2 b.1.18.11 (A:183-393) Arrestin {Cow (Bos taurus), visual arrestin [TaxId: 9913]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Arrestin/Vps26-like
domain: Arrestin
species: Cow (Bos taurus), visual arrestin [TaxId: 9913]

Probab=99.07  E-value=4.3e-10  Score=103.70  Aligned_cols=56  Identities=29%  Similarity=0.340  Sum_probs=51.0

Q ss_pred             eeEeEeEeeeeecCCcEEEEEEEcccccccCceEEEEEEEEcCCcceeEeeeceeeecc
Q psy10650        206 CEIEHKLGVACVSSGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALTEQP  264 (446)
Q Consensus       206 ~~~~k~~~~~c~~sG~v~l~v~lpr~gYvPGE~I~v~v~I~N~S~k~ik~i~~~L~q~~  264 (446)
                      .+.+|.   |+|++|+|+|+++|||+||+|||+|.|++.|+|.|++.|+.|+++|.|.+
T Consensus         8 ~e~~k~---f~~~sg~l~l~~~ldr~~Y~~Ge~I~v~v~i~N~s~~~v~~i~~~l~Q~~   63 (211)
T d1cf1a2           8 AEASWQ---FFMSDKPLRLAVSLSKEIYYHGEPIPVTVAVTNSTEKTVKKIKVLVEQVT   63 (211)
T ss_dssp             EEEEEE---EEETTEEEEEEEEESCSEEETTCCEEEEEEEEECSSSCEEEEEEEEEEEE
T ss_pred             eEEEee---EEecCCCEEEEEEECCceEcCCCEEEEEEEEEcCCCcceeeEEEEEEEEE
Confidence            344555   47999999999999999999999999999999999999999999999973

>d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Sialidase, "linker" domain
species: Micromonospora viridifaciens [TaxId: 1881]

Probab=92.34  E-value=0.24  Score=38.75  Aligned_cols=95  Identities=15%  Similarity=0.196  Sum_probs=63.4

Q ss_pred             EEeccceecCCCeEEEEEEEeeccceeeeeeEEEEEEEEEEEeccceeeeeEEEEeeeecCccCCCCccceeeeeEecCC
Q psy10650        287 VSLDRGGYVPGETIIINATVYNRSKITVKSTKAALTETIQYLARNKVLESETRELASLTRGKIKPGERDDWTNQQLYVPP  366 (446)
Q Consensus       287 ~sl~r~gY~pGE~I~i~v~I~N~S~~~I~~i~v~Liq~v~y~a~~~~~~~~~~~V~~~~~~~V~~g~~~~~~~~~L~IP~  366 (446)
                      ++++..+..||+.+.+.+.|.|..+..+..+.+.|--     -.+..-        ......++||++.+. ...+.+|.
T Consensus         6 ~t~p~~~v~pG~~~~~~vtVtN~g~~~~~~~~~~~~~-----P~GW~v--------~~~~~~L~pG~s~~~-~~~Vt~p~   71 (103)
T d1w8oa1           6 FTIPDVALEPGQQVTVPVAVTNQSGIAVPKPSLQLDA-----SPDWQV--------QGSVEPLMPGRQAKG-QVTITVPA   71 (103)
T ss_dssp             EECCCEEECTTCEEEEEEEEECCSSSCBSSCEEEEEC-----CTTSEE--------EEEECCBCTTCEEEE-EEEEECCT
T ss_pred             ccCcceeeCCCCeEEEEEEEEeCCCCceeeeeEEEcC-----CCCccc--------cCcceeeCCCCcEEE-EEEEECCC
Confidence            4567788999999999999999988888877776531     122221        011235889999887 78888887


Q ss_pred             CCCCCcCCCceEEEEEEEEEEEecCCCCCCeEEEecEEEE
Q psy10650        367 LPPTNLRGCHLIKIQYDVFFIVDPKSIEKPVKLQLPIMLA  406 (446)
Q Consensus       367 i~PT~l~~~~iI~V~Y~L~V~v~~~~~~~~l~v~lPIiIG  406 (446)
                      ..+.         =+|.|.+.+...+.  .....+-+.+|
T Consensus        72 ~a~~---------G~Y~i~~~a~~~~~--~~s~t~tvtV~  100 (103)
T d1w8oa1          72 GTTP---------GRYRVGATLRTSAG--NASTTFTVTVG  100 (103)
T ss_dssp             TCCC---------EEEEEEEEEEETTE--EEEEEEEEEES
T ss_pred             CCCC---------ceEEEEEEEEeCCc--ceEEEEEEEEE
Confidence            4432         15888888866542  23445555554

>d1cf1a1 b.1.18.11 (A:10-182) Arrestin {Cow (Bos taurus), visual arrestin [TaxId: 9913]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Arrestin/Vps26-like
domain: Arrestin
species: Cow (Bos taurus), visual arrestin [TaxId: 9913]

Probab=86.00  E-value=0.2  Score=42.51  Aligned_cols=36  Identities=33%  Similarity=0.528  Sum_probs=29.6

Q ss_pred             eEEEEeEEEecCCCCCceEE--------eecccEEEEEEEEEec
Q psy10650        120 GIHSFPFKLGLPLGLPSTFL--------GKHGWVQYFCKAALRE  155 (446)
Q Consensus       120 G~~~~pf~f~LP~~lP~Sf~--------~~~g~IrY~i~~~i~~  155 (446)
                      |...|||.|.+|.++|+|+.        |+.+-|.|.+++.+..
T Consensus       103 G~nA~PF~f~~p~~~P~SVtLQP~p~d~GkpcGVdyevK~f~ae  146 (173)
T d1cf1a1         103 GANTYPFLLTFPDYLPCSVMLQPAPQDVGKSCGVDFEIKAFATH  146 (173)
T ss_dssp             CSSEEEEEECCCSSCCCCEEECCCTTCCSCCEEEEEEEEEEEEC
T ss_pred             CCCCcceEEeCCCCCCceEEeccCCccCCCcceeeEEEEEEEec
Confidence            78889999999999999984        4556799999998753

>d1g4ma1 b.1.18.11 (A:5-175) Arrestin {Cow (Bos taurus), beta-arrestin 1 [TaxId: 9913]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Arrestin/Vps26-like
domain: Arrestin
species: Cow (Bos taurus), beta-arrestin 1 [TaxId: 9913]

Probab=83.11  E-value=0.26  Score=41.79  Aligned_cols=36  Identities=39%  Similarity=0.635  Sum_probs=28.7

Q ss_pred             eEEEEeEEEecCCCCCceEE--------eecccEEEEEEEEEec
Q psy10650        120 GIHSFPFKLGLPLGLPSTFL--------GKHGWVQYFCKAALRE  155 (446)
Q Consensus       120 G~~~~pf~f~LP~~lP~Sf~--------~~~g~IrY~i~~~i~~  155 (446)
                      |...|||.|.+|.++|+|+.        |+.+-|.|.+++-+..
T Consensus       105 G~nA~PF~f~~p~~~P~SVtLQP~~~d~gkpcGVdyevk~f~ae  148 (171)
T d1g4ma1         105 GEHAYPFTFEIPPNLPCSVTLQPGPEDTGKACGVDYEVKAFCAE  148 (171)
T ss_dssp             CTTEEEEEECCCTTSCCCEEEECCGGGGGGCEEEEEEEEEEEES
T ss_pred             ccCceeeeecCCCCCCCeEEeccCCccCCCcceeEEEEEEEEcC
Confidence            77788999999999999884        3456789999987754

>d1so9a_ b.146.1.1 (A:) Cytochrome C oxidase assembly protein CtaG {Rhizobium meliloti (Sinorhizobium meliloti) [TaxId: 382]}

class: All beta proteins
fold: Ctag/Cox11
superfamily: Ctag/Cox11
family: Ctag/Cox11
domain: Cytochrome C oxidase assembly protein CtaG
species: Rhizobium meliloti (Sinorhizobium meliloti) [TaxId: 382]

Probab=80.07  E-value=0.78  Score=37.35  Aligned_cols=60  Identities=17%  Similarity=0.127  Sum_probs=42.5

Q ss_pred             ccCceEEEEEEEEcCCcceeEeeeceeeeccccccccceeeeeEecCCceeEEEEeccceecCCCeEEEEE
Q psy10650        234 VPGETIIINATVYNRSKITVKSTKAALTEQPFDCEIEHKLGVACVSSGPVLCRVSLDRGGYVPGETIIINA  304 (446)
Q Consensus       234 vPGE~I~v~v~I~N~S~k~ik~i~~~L~q~~~~~~~~~~~~~~c~~~G~v~l~~sl~r~gY~pGE~I~i~v  304 (446)
                      -|||...+...+.|.|++.+....+=-+-=.-.+..=.++.|+|+           ..+-+.|||++.+-+
T Consensus        39 ~pGe~~~v~y~a~N~s~~~~~g~A~~nV~P~~a~~Yf~KieCFCF-----------~~Q~L~pgE~~~mpv   98 (131)
T d1so9a_          39 RIGETVQIMYRAKNLASTPTTGQATFNVTPMAAGAYFNKVQCFCF-----------TETTLEPGEEMEMPV   98 (131)
T ss_dssp             CTTCCCCEEEEEEECSSSCEECCCEEEECSSSCSTTBTTSCCSSC-----------SCCEECTTCEEEEEE
T ss_pred             eCCCeEEEEEEEECCCCCcEEEEEEeeeCHHHHhhheecCcEEEE-----------eeeEECCCCEEEEeE
Confidence            589999999999999999998765433221112233345788887           456788999877655