Psyllid ID: psy10664

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70-----
Protein Sequence
MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKM
Secondary Structure (PSIPRED)
cccccccccccEEEcccEEEEcccHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHccccccHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEEccccEHcccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
midgvdseagaivaggrgyflkgpAVCLQVGLVQYALSKWiekgytplytpfFMRKEVMQEVAQLAQFDEELYKM
Flexible Loop (DISEMBL)
midgvdseAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKM
Low Complexity Region (SEG)
MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKM
Disordered region (IsUnstruct)
*********GAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQ********
Disordered Region (DISOPRED)
MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKM
Disordered Region (DISEMBL)
MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKM
Disordered Region (DISPRO)
*IDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKM
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	75	2.2.26 [Sep-21-2011]
Q18678	487	Probable serine--tRNA lig	yes	N/A	1.0	0.154	0.693	8e-26
Q4R4U9	514	Serine--tRNA ligase, cyto	N/A	N/A	1.0	0.145	0.693	1e-25
P26638	512	Serine--tRNA ligase, cyto	yes	N/A	1.0	0.146	0.706	1e-25
Q9GMB8	514	Serine--tRNA ligase, cyto	yes	N/A	1.0	0.145	0.68	2e-25
Q5R9K9	514	Serine--tRNA ligase, cyto	yes	N/A	1.0	0.145	0.68	7e-25
P49591	514	Serine--tRNA ligase, cyto	yes	N/A	1.0	0.145	0.68	7e-25
Q6P799	512	Serine--tRNA ligase, cyto	yes	N/A	1.0	0.146	0.693	2e-24
Q7KWQ2	451	Serine--tRNA ligase, cyto	yes	N/A	1.0	0.166	0.533	4e-17
O81983	438	Serine--tRNA ligase OS=He	N/A	N/A	0.933	0.159	0.571	4e-16
Q2NEU9	424	Serine--tRNA ligase OS=Me	yes	N/A	1.0	0.176	0.453	9e-16

>sp|Q18678|SYSC_CAEEL Probable serine--tRNA ligase, cytoplasmic OS=Caenorhabditis elegans GN=srs-2 PE=3 SV=1

 Score =  115 bits (288), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 52/75 (69%), Positives = 61/75 (81%)

Query: 1   MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQ 60
           M+DG D E G +VAGGRGYFLKGP V L+  ++Q AL +   KGY PLYTPFFMRKEVMQ
Sbjct: 176 MVDGFDGERGTVVAGGRGYFLKGPLVFLEQAIIQLALQRLNVKGYVPLYTPFFMRKEVMQ 235

Query: 61  EVAQLAQFDEELYKM 75
           EVAQL+QFD+ELYK+
Sbjct: 236 EVAQLSQFDDELYKV 250

Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec).
Caenorhabditis elegans (taxid: 6239)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 1

>sp|Q4R4U9|SYSC_MACFA Serine--tRNA ligase, cytoplasmic OS=Macaca fascicularis GN=SARS PE=2 SV=3

 Score =  114 bits (286), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 52/75 (69%), Positives = 61/75 (81%)

Query: 1   MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQ 60
           M+DG + E GA+VAG RGYFLKG  V L+  L+QYAL     +GYTP+YTPFFMRKEVMQ
Sbjct: 176 MVDGFEGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQ 235

Query: 61  EVAQLAQFDEELYKM 75
           EVAQL+QFDEELYK+
Sbjct: 236 EVAQLSQFDEELYKV 250

Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec).

Macaca fascicularis (taxid: 9541)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 1

>sp|P26638|SYSC_MOUSE Serine--tRNA ligase, cytoplasmic OS=Mus musculus GN=Sars PE=2 SV=3

 Score =  114 bits (286), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 53/75 (70%), Positives = 62/75 (82%)

Query: 1   MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQ 60
           M+DG + E GA+VAG RGYFLKGP V L+  L+QYAL     +GYTP+YTPFFMRKEVMQ
Sbjct: 176 MVDGFEGEKGAVVAGSRGYFLKGPLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQ 235

Query: 61  EVAQLAQFDEELYKM 75
           EVAQL+QFDEELYK+
Sbjct: 236 EVAQLSQFDEELYKV 250

Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec).

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 1

>sp|Q9GMB8|SYSC_BOVIN Serine--tRNA ligase, cytoplasmic OS=Bos taurus GN=SARS PE=2 SV=3

 Score =  114 bits (284), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 51/75 (68%), Positives = 61/75 (81%)

Query: 1   MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQ 60
           M+DG + E GA+VAG RGYFLKG  V L+  L+Q+AL     +GYTP+YTPFFMRKEVMQ
Sbjct: 176 MVDGFEGEKGAVVAGSRGYFLKGVLVFLEQALIQFALRTLASRGYTPIYTPFFMRKEVMQ 235

Query: 61  EVAQLAQFDEELYKM 75
           EVAQL+QFDEELYK+
Sbjct: 236 EVAQLSQFDEELYKV 250

Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec).

Bos taurus (taxid: 9913)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 1

>sp|Q5R9K9|SYSC_PONAB Serine--tRNA ligase, cytoplasmic OS=Pongo abelii GN=SARS PE=2 SV=3

 Score =  112 bits (280), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 51/75 (68%), Positives = 60/75 (80%)

Query: 1   MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQ 60
           M+DG + E GA+VAG RGYFLKG  V L+  L+QYAL     +GY P+YTPFFMRKEVMQ
Sbjct: 176 MVDGFEGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQ 235

Query: 61  EVAQLAQFDEELYKM 75
           EVAQL+QFDEELYK+
Sbjct: 236 EVAQLSQFDEELYKV 250

Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec).

Pongo abelii (taxid: 9601)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 1

>sp|P49591|SYSC_HUMAN Serine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=SARS PE=1 SV=3

 Score =  112 bits (280), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 51/75 (68%), Positives = 60/75 (80%)

Query: 1   MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQ 60
           M+DG + E GA+VAG RGYFLKG  V L+  L+QYAL     +GY P+YTPFFMRKEVMQ
Sbjct: 176 MVDGFEGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQ 235

Query: 61  EVAQLAQFDEELYKM 75
           EVAQL+QFDEELYK+
Sbjct: 236 EVAQLSQFDEELYKV 250

Catalyzes the attachment of serine to tRNA(Ser). Is also probably able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec).

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 1

>sp|Q6P799|SYSC_RAT Serine--tRNA ligase, cytoplasmic OS=Rattus norvegicus GN=Sars PE=1 SV=3

 Score =  110 bits (276), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 52/75 (69%), Positives = 61/75 (81%)

Query: 1   MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQ 60
           M+DG + E GA+VAG RGYFLKG  V L+  L+QYAL     +GYTP+YTPFFMRKEVMQ
Sbjct: 176 MVDGFEGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQ 235

Query: 61  EVAQLAQFDEELYKM 75
           EVAQL+QFDEELYK+
Sbjct: 236 EVAQLSQFDEELYKV 250

Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec).

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 1

>sp|Q7KWQ2|SYSC_DICDI Serine--tRNA ligase, cytoplasmic OS=Dictyostelium discoideum GN=serS PE=1 SV=1

 Score = 86.7 bits (213), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 40/75 (53%), Positives = 51/75 (68%)

Query: 1   MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQ 60
           MIDG D E G +V+G R YFLKG  V L   ++ +AL    ++G  PL TPFFM K+VM 
Sbjct: 150 MIDGYDPERGTLVSGHRCYFLKGIGVLLNQAIINFALMHMTKRGSVPLQTPFFMNKDVMA 209

Query: 61  EVAQLAQFDEELYKM 75
           + AQL QFD+ELYK+
Sbjct: 210 KTAQLEQFDDELYKV 224

Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec).

Dictyostelium discoideum (taxid: 44689)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 1

>sp|O81983|SYS_HELAN Serine--tRNA ligase OS=Helianthus annuus PE=2 SV=1

 Score = 83.6 bits (205), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 40/70 (57%), Positives = 50/70 (71%)

Query: 6   DSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQL 65
           D + GA VAGGRGY+LKG  V L   L+ + L    ++ YT L TPFFMRK++M + AQL
Sbjct: 154 DLKKGANVAGGRGYYLKGDGVRLNQALINFGLDFLEKRKYTALQTPFFMRKDIMGKCAQL 213

Query: 66  AQFDEELYKM 75
           AQFDEELYK+
Sbjct: 214 AQFDEELYKV 223

Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec).

Helianthus annuus (taxid: 4232)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 1

>sp|Q2NEU9|SYS_METST Serine--tRNA ligase OS=Methanosphaera stadtmanae (strain DSM 3091) GN=serS PE=3 SV=1

 Score = 82.0 bits (201), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 34/75 (45%), Positives = 55/75 (73%)

Query: 1   MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQ 60
           +IDG D++  + +AG R Y+LK   + L + L+Q+AL++  +KGYTPL TPFF++ EV +
Sbjct: 145 LIDGADTDTASQIAGSRFYYLKQDILFLNLALIQFALNELKDKGYTPLQTPFFIKSEVAE 204

Query: 61  EVAQLAQFDEELYKM 75
           E ++L +F+E LYK+
Sbjct: 205 ETSELGEFEETLYKV 219

Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec).

Methanosphaera stadtmanae (strain DSM 3091) (taxid: 339860)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	75
328712780	489	PREDICTED: seryl-tRNA synthetase, cytopl	1.0	0.153	0.76	6e-28
383854318	534	PREDICTED: serine--tRNA ligase, cytoplas	1.0	0.140	0.72	4e-26
387018622	514	Seryl-tRNA synthetase, cytoplasmic-like	1.0	0.145	0.72	7e-26
332374480	492	unknown [Dendroctonus ponderosae]	1.0	0.152	0.706	8e-26
148231408	510	seryl-tRNA synthetase [Xenopus laevis] g	1.0	0.147	0.72	1e-25
449677187	450	PREDICTED: serine--tRNA ligase, cytoplas	1.0	0.166	0.733	2e-25
357606091	494	hypothetical protein KGM_16833 [Danaus p	1.0	0.151	0.746	3e-25
224085041	492	PREDICTED: serine--tRNA ligase, cytoplas	1.0	0.152	0.706	3e-25
47498044	511	seryl-tRNA synthetase [Xenopus (Silurana	1.0	0.146	0.706	3e-25
270010395	529	hypothetical protein TcasGA2_TC009786 [T	1.0	0.141	0.706	5e-25

>gi|328712780|ref|XP_001945803.2| PREDICTED: seryl-tRNA synthetase, cytoplasmic-like [Acyrthosiphon pisum]

 Score =  127 bits (320), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 57/75 (76%), Positives = 65/75 (86%)

Query: 1   MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQ 60
           MIDGVD++AG  V+G RGY+LKGPAV LQ  LVQ AL +W +KGY PLYTPFFMRKE+MQ
Sbjct: 175 MIDGVDADAGTTVSGTRGYYLKGPAVFLQSALVQEALRRWDDKGYKPLYTPFFMRKEIMQ 234

Query: 61  EVAQLAQFDEELYKM 75
           EVAQLAQFDEELYK+
Sbjct: 235 EVAQLAQFDEELYKV 249

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383854318|ref|XP_003702668.1| PREDICTED: serine--tRNA ligase, cytoplasmic-like [Megachile rotundata]

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 54/75 (72%), Positives = 62/75 (82%)

Query: 1   MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQ 60
           MIDG+D E G  ++GGRGYFL GPAV LQ  L+QYAL +   KGY PLYTPFFMRK+VMQ
Sbjct: 217 MIDGIDGERGTNISGGRGYFLMGPAVFLQHALIQYALRQLFSKGYKPLYTPFFMRKDVMQ 276

Query: 61  EVAQLAQFDEELYKM 75
           EVAQL+QFDEELYK+
Sbjct: 277 EVAQLSQFDEELYKV 291

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|387018622|gb|AFJ51429.1| Seryl-tRNA synthetase, cytoplasmic-like [Crotalus adamanteus]

 Score =  121 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 54/75 (72%), Positives = 63/75 (84%)

Query: 1   MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQ 60
           M+DG + E GA+VAG RGYFLKGP V L+  L+QYAL   + KGYTP+YTPFFMRKEVMQ
Sbjct: 176 MVDGYEGEKGAVVAGSRGYFLKGPLVFLEQALIQYALQTLLSKGYTPVYTPFFMRKEVMQ 235

Query: 61  EVAQLAQFDEELYKM 75
           EVAQL+QFDEELYK+
Sbjct: 236 EVAQLSQFDEELYKV 250

Source: Crotalus adamanteus

Species: Crotalus adamanteus

Genus: Crotalus

Family: Viperidae

Order: Squamata

Phylum: Chordata

Superkingdom: Eukaryota

>gi|332374480|gb|AEE62381.1| unknown [Dendroctonus ponderosae]

 Score =  120 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 53/75 (70%), Positives = 65/75 (86%)

Query: 1   MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQ 60
           MIDGVD+E G +V+GGRGY+L GPAV L+  LVQ+AL + + KGY PLYTPFFM+KE+MQ
Sbjct: 177 MIDGVDTERGTVVSGGRGYYLTGPAVFLEQALVQFALRQLLVKGYKPLYTPFFMKKEIMQ 236

Query: 61  EVAQLAQFDEELYKM 75
           EVAQL+QFDEELYK+
Sbjct: 237 EVAQLSQFDEELYKV 251

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|148231408|ref|NP_001080487.1| seryl-tRNA synthetase [Xenopus laevis] gi|27697084|gb|AAH43975.1| Sars-prov protein [Xenopus laevis]

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 54/75 (72%), Positives = 62/75 (82%)

Query: 1   MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQ 60
           M+DG + E GA+VAG RGYFLKGP V L+  L+Q AL    EKGYTP+YTPFFMRKEVMQ
Sbjct: 175 MVDGFEGEKGAVVAGSRGYFLKGPLVFLEQALIQLALHTLAEKGYTPIYTPFFMRKEVMQ 234

Query: 61  EVAQLAQFDEELYKM 75
           EVAQL+QFDEELYK+
Sbjct: 235 EVAQLSQFDEELYKV 249

Source: Xenopus laevis

Species: Xenopus laevis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|449677187|ref|XP_002157171.2| PREDICTED: serine--tRNA ligase, cytoplasmic-like [Hydra magnipapillata]

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 55/75 (73%), Positives = 60/75 (80%)

Query: 1   MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQ 60
           MIDGVD E GA VAG RGYFLKGP V LQ  L+  AL   +  GYTP+YTPFFMRKEVMQ
Sbjct: 123 MIDGVDYERGANVAGNRGYFLKGPGVLLQQALINLALQTLVGSGYTPIYTPFFMRKEVMQ 182

Query: 61  EVAQLAQFDEELYKM 75
           EVAQL+QFDEELYK+
Sbjct: 183 EVAQLSQFDEELYKV 197

Source: Hydra magnipapillata

Species: Hydra magnipapillata

Genus: Hydra

Family: Hydridae

Order: Hydroida

Class: Hydrozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|357606091|gb|EHJ64911.1| hypothetical protein KGM_16833 [Danaus plexippus]

 Score =  119 bits (297), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 56/75 (74%), Positives = 65/75 (86%)

Query: 1   MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQ 60
           MIDG+D E GA V+GGRGY+LKGPAV L+  LVQ +L   +E+GYTPLYTPFFM+KEVMQ
Sbjct: 177 MIDGMDGERGAAVSGGRGYYLKGPAVFLEQALVQLSLRMLLERGYTPLYTPFFMKKEVMQ 236

Query: 61  EVAQLAQFDEELYKM 75
           EVAQLAQFDEELYK+
Sbjct: 237 EVAQLAQFDEELYKV 251

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|224085041|ref|XP_002196082.1| PREDICTED: serine--tRNA ligase, cytoplasmic [Taeniopygia guttata]

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 53/75 (70%), Positives = 62/75 (82%)

Query: 1   MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQ 60
           M+DG + E GA+VAG RGYFLKGP V L+  L+QYAL     +GYTP+YTPFFMRKEVMQ
Sbjct: 137 MVDGYEGEKGAVVAGSRGYFLKGPLVFLEQALIQYALQSLRARGYTPVYTPFFMRKEVMQ 196

Query: 61  EVAQLAQFDEELYKM 75
           EVAQL+QFDEELYK+
Sbjct: 197 EVAQLSQFDEELYKV 211

Source: Taeniopygia guttata

Species: Taeniopygia guttata

Genus: Taeniopygia

Family: Estrildidae

Order: Passeriformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|47498044|ref|NP_998852.1| seryl-tRNA synthetase [Xenopus (Silurana) tropicalis] gi|45708834|gb|AAH67920.1| seryl-aminoacyl-tRNA synthetase 1 [Xenopus (Silurana) tropicalis] gi|89269852|emb|CAJ83597.1| seryl-tRNA synthetase [Xenopus (Silurana) tropicalis]

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 53/75 (70%), Positives = 62/75 (82%)

Query: 1   MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQ 60
           M+DG + E GA+VAG RGYFLKGP V L+  L+Q+AL    EK YTP+YTPFFMRKEVMQ
Sbjct: 175 MVDGFEGEKGAVVAGSRGYFLKGPLVFLEQALIQFALHTLAEKQYTPIYTPFFMRKEVMQ 234

Query: 61  EVAQLAQFDEELYKM 75
           EVAQL+QFDEELYK+
Sbjct: 235 EVAQLSQFDEELYKV 249

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|270010395|gb|EFA06843.1| hypothetical protein TcasGA2_TC009786 [Tribolium castaneum]

 Score =  118 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 53/75 (70%), Positives = 63/75 (84%)

Query: 1   MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQ 60
           MIDGVD+E GA ++GGRGYFL GPA+ L+  L+Q AL    +KGY PLYTPFFMRKE+MQ
Sbjct: 177 MIDGVDTERGATISGGRGYFLTGPALFLEHALIQLALRMLHKKGYKPLYTPFFMRKEIMQ 236

Query: 61  EVAQLAQFDEELYKM 75
           EVAQL+QFDEELYK+
Sbjct: 237 EVAQLSQFDEELYKV 251

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	75
MGI|MGI:102809	512	Sars "seryl-aminoacyl-tRNA syn	1.0	0.146	0.706	2.9e-24
WB|WBGene00005663	487	sars-1 [Caenorhabditis elegans	1.0	0.154	0.693	6.5e-24
RGD|628813	512	Sars "seryl-tRNA synthetase" [	1.0	0.146	0.693	2.9e-23
UNIPROTKB|Q6P799	512	Sars "Serine--tRNA ligase, cyt	1.0	0.146	0.693	2.9e-23
UNIPROTKB|E2R4D5	513	SARS "Uncharacterized protein"	1.0	0.146	0.693	2.9e-23
UNIPROTKB|F1S5Z3	514	SARS "Uncharacterized protein"	1.0	0.145	0.693	2.9e-23
UNIPROTKB|Q9GMB8	514	SARS "Serine--tRNA ligase, cyt	1.0	0.145	0.68	3.7e-23
UNIPROTKB|P49591	514	SARS "Serine--tRNA ligase, cyt	1.0	0.145	0.68	1.3e-22
UNIPROTKB|Q5T5C7	536	SARS "Serine--tRNA ligase, cyt	1.0	0.139	0.68	1.5e-22
FB|FBgn0031497	501	CG17259 [Drosophila melanogast	1.0	0.149	0.68	2e-22

MGI|MGI:102809 Sars "seryl-aminoacyl-tRNA synthetase" [Mus musculus (taxid:10090)]

 Score = 283 (104.7 bits), Expect = 2.9e-24, P = 2.9e-24
 Identities = 53/75 (70%), Positives = 62/75 (82%)

Query:     1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQ 60
             M+DG + E GA+VAG RGYFLKGP V L+  L+QYAL     +GYTP+YTPFFMRKEVMQ
Sbjct:   176 MVDGFEGEKGAVVAGSRGYFLKGPLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQ 235

Query:    61 EVAQLAQFDEELYKM 75
             EVAQL+QFDEELYK+
Sbjct:   236 EVAQLSQFDEELYKV 250

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA

GO:0004828 "serine-tRNA ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006412 "translation" evidence=IEA

GO:0006418 "tRNA aminoacylation for protein translation" evidence=IEA

GO:0006434 "seryl-tRNA aminoacylation" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

WB|WBGene00005663 sars-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 279 (103.3 bits), Expect = 6.5e-24, P = 6.5e-24
 Identities = 52/75 (69%), Positives = 61/75 (81%)

Query:     1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQ 60
             M+DG D E G +VAGGRGYFLKGP V L+  ++Q AL +   KGY PLYTPFFMRKEVMQ
Sbjct:   176 MVDGFDGERGTVVAGGRGYFLKGPLVFLEQAIIQLALQRLNVKGYVPLYTPFFMRKEVMQ 235

Query:    61 EVAQLAQFDEELYKM 75
             EVAQL+QFD+ELYK+
Sbjct:   236 EVAQLSQFDDELYKV 250

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006418 "tRNA aminoacylation for protein translation" evidence=IEA

GO:0004828 "serine-tRNA ligase activity" evidence=IEA

GO:0006434 "seryl-tRNA aminoacylation" evidence=IEA

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

RGD|628813 Sars "seryl-tRNA synthetase" [Rattus norvegicus (taxid:10116)]

 Score = 274 (101.5 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 52/75 (69%), Positives = 61/75 (81%)

Query:     1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQ 60
             M+DG + E GA+VAG RGYFLKG  V L+  L+QYAL     +GYTP+YTPFFMRKEVMQ
Sbjct:   176 MVDGFEGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQ 235

Query:    61 EVAQLAQFDEELYKM 75
             EVAQL+QFDEELYK+
Sbjct:   236 EVAQLSQFDEELYKV 250

GO:0004828 "serine-tRNA ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0006434 "seryl-tRNA aminoacylation" evidence=IEA

GO:0097056 "selenocysteinyl-tRNA(Sec) biosynthetic process" evidence=IEA

UNIPROTKB|Q6P799 Sars "Serine--tRNA ligase, cytoplasmic" [Rattus norvegicus (taxid:10116)]

 Score = 274 (101.5 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 52/75 (69%), Positives = 61/75 (81%)

Query:     1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQ 60
             M+DG + E GA+VAG RGYFLKG  V L+  L+QYAL     +GYTP+YTPFFMRKEVMQ
Sbjct:   176 MVDGFEGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQ 235

Query:    61 EVAQLAQFDEELYKM 75
             EVAQL+QFDEELYK+
Sbjct:   236 EVAQLSQFDEELYKV 250

GO:0006434 "seryl-tRNA aminoacylation" evidence=IEA

UNIPROTKB|E2R4D5 SARS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 274 (101.5 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 52/75 (69%), Positives = 61/75 (81%)

Query:     1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQ 60
             M+DG + E GA+VAG RGYFLKG  V L+  L+QYAL     +GYTP+YTPFFMRKEVMQ
Sbjct:   175 MVDGFEGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQ 234

Query:    61 EVAQLAQFDEELYKM 75
             EVAQL+QFDEELYK+
Sbjct:   235 EVAQLSQFDEELYKV 249

GO:0005739 "mitochondrion" evidence=IEA

GO:0006434 "seryl-tRNA aminoacylation" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004828 "serine-tRNA ligase activity" evidence=IEA

UNIPROTKB|F1S5Z3 SARS "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 274 (101.5 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 52/75 (69%), Positives = 61/75 (81%)

Query:     1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQ 60
             M+DG + E GA+VAG RGYFLKG  V L+  L+QYAL     +GYTP+YTPFFMRKEVMQ
Sbjct:   176 MVDGFEGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQ 235

Query:    61 EVAQLAQFDEELYKM 75
             EVAQL+QFDEELYK+
Sbjct:   236 EVAQLSQFDEELYKV 250

GO:0005739 "mitochondrion" evidence=IEA

GO:0006434 "seryl-tRNA aminoacylation" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004828 "serine-tRNA ligase activity" evidence=IEA

UNIPROTKB|Q9GMB8 SARS "Serine--tRNA ligase, cytoplasmic" [Bos taurus (taxid:9913)]

 Score = 273 (101.2 bits), Expect = 3.7e-23, P = 3.7e-23
 Identities = 51/75 (68%), Positives = 61/75 (81%)

Query:     1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQ 60
             M+DG + E GA+VAG RGYFLKG  V L+  L+Q+AL     +GYTP+YTPFFMRKEVMQ
Sbjct:   176 MVDGFEGEKGAVVAGSRGYFLKGVLVFLEQALIQFALRTLASRGYTPIYTPFFMRKEVMQ 235

Query:    61 EVAQLAQFDEELYKM 75
             EVAQL+QFDEELYK+
Sbjct:   236 EVAQLSQFDEELYKV 250

GO:0097056 "selenocysteinyl-tRNA(Sec) biosynthetic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0004828 "serine-tRNA ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006434 "seryl-tRNA aminoacylation" evidence=IEA

UNIPROTKB|P49591 SARS "Serine--tRNA ligase, cytoplasmic" [Homo sapiens (taxid:9606)]

 Score = 268 (99.4 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 51/75 (68%), Positives = 60/75 (80%)

Query:     1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQ 60
             M+DG + E GA+VAG RGYFLKG  V L+  L+QYAL     +GY P+YTPFFMRKEVMQ
Sbjct:   176 MVDGFEGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQ 235

Query:    61 EVAQLAQFDEELYKM 75
             EVAQL+QFDEELYK+
Sbjct:   236 EVAQLSQFDEELYKV 250

GO:0006434 "seryl-tRNA aminoacylation" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0097056 "selenocysteinyl-tRNA(Sec) biosynthetic process" evidence=IEA

GO:0008033 "tRNA processing" evidence=TAS

GO:0003723 "RNA binding" evidence=TAS

GO:0006412 "translation" evidence=TAS

GO:0004828 "serine-tRNA ligase activity" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006418 "tRNA aminoacylation for protein translation" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|Q5T5C7 SARS "Serine--tRNA ligase, cytoplasmic" [Homo sapiens (taxid:9606)]

 Score = 268 (99.4 bits), Expect = 1.5e-22, P = 1.5e-22
 Identities = 51/75 (68%), Positives = 60/75 (80%)

Query:     1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQ 60
             M+DG + E GA+VAG RGYFLKG  V L+  L+QYAL     +GY P+YTPFFMRKEVMQ
Sbjct:   176 MVDGFEGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQ 235

Query:    61 EVAQLAQFDEELYKM 75
             EVAQL+QFDEELYK+
Sbjct:   236 EVAQLSQFDEELYKV 250

GO:0004828 "serine-tRNA ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006434 "seryl-tRNA aminoacylation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

FB|FBgn0031497 CG17259 [Drosophila melanogaster (taxid:7227)]

 Score = 266 (98.7 bits), Expect = 2.0e-22, P = 2.0e-22
 Identities = 51/75 (68%), Positives = 62/75 (82%)

Query:     1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQ 60
             MIDG+++E GA+V+GGRGYFL G AV L+  L+Q+AL     + Y PLYTPFFMRKEVMQ
Sbjct:   177 MIDGMNAEKGAVVSGGRGYFLTGAAVFLEQALIQHALHLLYARDYVPLYTPFFMRKEVMQ 236

Query:    61 EVAQLAQFDEELYKM 75
             EVAQL+QFDEELYK+
Sbjct:   237 EVAQLSQFDEELYKV 251

GO:0004828 "serine-tRNA ligase activity" evidence=ISS

GO:0006434 "seryl-tRNA aminoacylation" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0005524 "ATP binding" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5R9K9	SYSC_PONAB	6, ., 1, ., 1, ., 1, 1	0.68	1.0	0.1459	yes	N/A
P49591	SYSC_HUMAN	6, ., 1, ., 1, ., 1, 1	0.68	1.0	0.1459	yes	N/A
Q6P799	SYSC_RAT	6, ., 1, ., 1, ., 1, 1	0.6933	1.0	0.1464	yes	N/A
Q7KWQ2	SYSC_DICDI	6, ., 1, ., 1, ., 1, 1	0.5333	1.0	0.1662	yes	N/A
Q18678	SYSC_CAEEL	6, ., 1, ., 1, ., 1, 1	0.6933	1.0	0.1540	yes	N/A
Q9GMB8	SYSC_BOVIN	6, ., 1, ., 1, ., 1, 1	0.68	1.0	0.1459	yes	N/A
Q39230	SYS_ARATH	6, ., 1, ., 1, ., 1, 1	0.5285	0.9333	0.1552	yes	N/A
P26638	SYSC_MOUSE	6, ., 1, ., 1, ., 1, 1	0.7066	1.0	0.1464	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	75
PLN02678	448	PLN02678, PLN02678, seryl-tRNA synthetase	3e-33
cd00770	297	cd00770, SerRS_core, Seryl-tRNA synthetase (SerRS)	8e-29
COG0172	429	COG0172, SerS, Seryl-tRNA synthetase [Translation,	4e-18
TIGR00414	418	TIGR00414, serS, seryl-tRNA synthetase	4e-17
PRK05431	425	PRK05431, PRK05431, seryl-tRNA synthetase; Provisi	5e-17
PLN02320	502	PLN02320, PLN02320, seryl-tRNA synthetase	1e-10
pfam00587	171	pfam00587, tRNA-synt_2b, tRNA synthetase class II	8e-06

>gnl|CDD|215364 PLN02678, PLN02678, seryl-tRNA synthetase

 Score =  117 bits (295), Expect = 3e-33
 Identities = 45/74 (60%), Positives = 56/74 (75%)

Query: 1   MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQ 60
           ++  VD+E GA VAGGRGY+LKG  V L   L+ + L+   ++GYTPL TPFFMRK+VM 
Sbjct: 149 LLGIVDTERGADVAGGRGYYLKGAGVLLNQALINFGLAFLRKRGYTPLQTPFFMRKDVMA 208

Query: 61  EVAQLAQFDEELYK 74
           + AQLAQFDEELYK
Sbjct: 209 KCAQLAQFDEELYK 222

Length = 448

>gnl|CDD|238393 cd00770, SerRS_core, Seryl-tRNA synthetase (SerRS) class II core catalytic domain

 Score =  103 bits (259), Expect = 8e-29
 Identities = 34/75 (45%), Positives = 50/75 (66%)

Query: 1   MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQ 60
            +D +D E GA V+G R Y+LKG    L+  L+ +AL    ++G+TP+  PF +RKEVM+
Sbjct: 27  KLDILDFERGAKVSGSRFYYLKGDGALLERALINFALDFLTKRGFTPVIPPFLVRKEVME 86

Query: 61  EVAQLAQFDEELYKM 75
              QL +FDE+LYK+
Sbjct: 87  GTGQLPKFDEQLYKV 101

SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer. Length = 297

>gnl|CDD|223250 COG0172, SerS, Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

 Score = 75.7 bits (187), Expect = 4e-18
 Identities = 26/72 (36%), Positives = 39/72 (54%)

Query: 3   DGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEV 62
             +D E  A V+G R YF KG    L+  L+Q+ L    + G+T +  P+ +  E M   
Sbjct: 151 GLLDFERAAKVSGSRFYFYKGKGARLERALIQFMLDLHTKHGFTEVLPPYLVNLESMFGT 210

Query: 63  AQLAQFDEELYK 74
            QL +F+E+LYK
Sbjct: 211 GQLPKFEEDLYK 222

Length = 429

>gnl|CDD|232965 TIGR00414, serS, seryl-tRNA synthetase

 Score = 72.8 bits (179), Expect = 4e-17
 Identities = 21/74 (28%), Positives = 39/74 (52%)

Query: 1   MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQ 60
            + G+D +    V G R Y+LK     L+  L+ + L    + GY  +Y P+ + +E + 
Sbjct: 148 KLGGLDFDRAVKVTGSRFYYLKNDGAKLERALINFMLDLLEKNGYQEIYPPYLVNEESLD 207

Query: 61  EVAQLAQFDEELYK 74
              QL +F+E+++K
Sbjct: 208 GTGQLPKFEEDIFK 221

This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model [Protein synthesis, tRNA aminoacylation]. Length = 418

>gnl|CDD|235461 PRK05431, PRK05431, seryl-tRNA synthetase; Provisional

 Score = 72.8 bits (180), Expect = 5e-17
 Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 1/76 (1%)

Query: 1   MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWI-EKGYTPLYTPFFMRKEVM 59
            +  +D E  A V+G R Y LKG    L+  L+Q+ L     E GYT +  P+ + +E M
Sbjct: 145 KLGILDFERAAKVSGSRFYVLKGDGARLERALIQFMLDLHTEEHGYTEVIPPYLVNEESM 204

Query: 60  QEVAQLAQFDEELYKM 75
               QL +F+E+LYK+
Sbjct: 205 YGTGQLPKFEEDLYKI 220

Length = 425

>gnl|CDD|177954 PLN02320, PLN02320, seryl-tRNA synthetase

 Score = 54.9 bits (132), Expect = 1e-10
 Identities = 25/60 (41%), Positives = 41/60 (68%)

Query: 2   IDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQE 61
           +D  D +A A V+G + Y+LK  AV L++ LV + LS+ ++KG+TPL TP  +R  V+++
Sbjct: 209 LDLFDFDAAAEVSGSKFYYLKNEAVLLEMALVNWTLSEVMKKGFTPLTTPEIVRSSVVEK 268

Length = 502

>gnl|CDD|216009 pfam00587, tRNA-synt_2b, tRNA synthetase class II core domain (G, H, P, S and T)

 Score = 40.7 bits (96), Expect = 8e-06
 Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 1/45 (2%)

Query: 32 LVQYALSKWIEKGYTPLYTPFFMRKEVMQEV-AQLAQFDEELYKM 75
          L  +        GY  + TP    KE+ +        F+EE+YK 
Sbjct: 5  LENFIRELLKRYGYQEVDTPILEPKELWEGSGHWDDYFEEEMYKF 49

Other tRNA synthetase sub-families are too dissimilar to be included. This domain is the core catalytic domain of tRNA synthetases and includes glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. Length = 171

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	75
COG0172	429	SerS Seryl-tRNA synthetase [Translation, ribosomal	99.93
PLN02678	448	seryl-tRNA synthetase	99.93
TIGR00414	418	serS seryl-tRNA synthetase. This model represents	99.9
PRK05431	425	seryl-tRNA synthetase; Provisional	99.9
PLN02320	502	seryl-tRNA synthetase	99.9
KOG2509|consensus	455		99.89
cd00770	297	SerRS_core Seryl-tRNA synthetase (SerRS) class II	99.88
PLN02837	614	threonine-tRNA ligase	99.85
cd00771	298	ThrRS_core Threonyl-tRNA synthetase (ThrRS) class	99.75
PRK00960	517	seryl-tRNA synthetase; Provisional	99.73
PRK14799	545	thrS threonyl-tRNA synthetase; Provisional	99.72
PLN02908	686	threonyl-tRNA synthetase	99.71
cd00778	261	ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS)	99.68
TIGR00415	520	serS_MJ seryl-tRNA synthetase, Methanococcus janna	99.67
KOG1637|consensus	560		99.65
PRK03991	613	threonyl-tRNA synthetase; Validated	99.62
TIGR00418	563	thrS threonyl-tRNA synthetase. This model represen	99.61
PRK12305	575	thrS threonyl-tRNA synthetase; Reviewed	99.61
COG0441	589	ThrS Threonyl-tRNA synthetase [Translation, riboso	99.57
cd00779	255	ProRS_core_prok Prolyl-tRNA synthetase (ProRS) cla	99.55
PRK12444	639	threonyl-tRNA synthetase; Reviewed	99.51
PRK04173	456	glycyl-tRNA synthetase; Provisional	99.49
PRK12325	439	prolyl-tRNA synthetase; Provisional	99.48
PRK00413	638	thrS threonyl-tRNA synthetase; Reviewed	99.4
PRK08661	477	prolyl-tRNA synthetase; Provisional	99.39
PRK09194	565	prolyl-tRNA synthetase; Provisional	99.38
cd00772	264	ProRS_core Prolyl-tRNA synthetase (ProRS) class II	99.35
TIGR00409	568	proS_fam_II prolyl-tRNA synthetase, family II. Pro	99.31
TIGR00408	472	proS_fam_I prolyl-tRNA synthetase, family I. Proly	99.22
PF00587	173	tRNA-synt_2b: tRNA synthetase class II core domain	99.09
cd00670	235	Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_t	98.99
COG0442	500	ProS Prolyl-tRNA synthetase [Translation, ribosoma	98.47
TIGR00389	551	glyS_dimeric glycyl-tRNA synthetase, dimeric type.	98.19
cd00774	254	GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-lik	98.08
PRK00037	412	hisS histidyl-tRNA synthetase; Reviewed	98.05
cd00773	261	HisRS-like_core Class II Histidinyl-tRNA synthetas	97.91
CHL00201	430	syh histidine-tRNA synthetase; Provisional	97.8
TIGR00442	397	hisS histidyl-tRNA synthetase. This model finds a	97.7
TIGR00443	314	hisZ_biosyn_reg ATP phosphoribosyltransferase, reg	97.57
COG0423	558	GRS1 Glycyl-tRNA synthetase (class II) [Translatio	97.44
PRK09537	417	pylS pyrolysyl-tRNA synthetase; Reviewed	97.37
PLN02734	684	glycyl-tRNA synthetase	97.3
PRK14894	539	glycyl-tRNA synthetase; Provisional	97.0
PLN02530	487	histidine-tRNA ligase	96.94
cd00768	211	class_II_aaRS-like_core Class II tRNA amino-acyl s	96.59
PRK12420	423	histidyl-tRNA synthetase; Provisional	96.54
KOG2324|consensus	457		96.09
PF13393	311	tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI	95.7
TIGR02367	453	PylS pyrrolysyl-tRNA synthetase. PylS is the archa	95.5
PRK12292	391	hisZ ATP phosphoribosyltransferase regulatory subu	95.44
PRK12293	281	hisZ ATP phosphoribosyltransferase regulatory subu	94.42
KOG2298|consensus	599		93.0
cd00775	329	LysRS_core Lys_tRNA synthetase (LysRS) class II co	92.7
COG0124	429	HisS Histidyl-tRNA synthetase [Translation, riboso	92.69
PF00152	335	tRNA-synt_2: tRNA synthetases class II (D, K and N	92.47
PRK09350	306	poxB regulator PoxA; Provisional	92.34
PRK12421	392	ATP phosphoribosyltransferase regulatory subunit;	92.08
cd00777	280	AspRS_core Asp tRNA synthetase (aspRS) class II co	91.77
PLN02221	572	asparaginyl-tRNA synthetase	91.36
cd00669	269	Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase cl	91.22
PLN02532	633	asparagine-tRNA synthetase	91.09
TIGR00462	304	genX lysyl-tRNA synthetase-like protein GenX. Many	90.7
COG0017	435	AsnS Aspartyl/asparaginyl-tRNA synthetases [Transl	90.58
PRK06462	335	asparagine synthetase A; Reviewed	90.34
PRK02983	1094	lysS lysyl-tRNA synthetase; Provisional	90.03
PRK12295	373	hisZ ATP phosphoribosyltransferase regulatory subu	89.9
PTZ00401	550	aspartyl-tRNA synthetase; Provisional	89.89
TIGR00458	428	aspS_arch aspartyl-tRNA synthetase, archaeal type.	89.55
PLN02972	763	Histidyl-tRNA synthetase	89.54
PLN02603	565	asparaginyl-tRNA synthetase	89.12
PRK12294	272	hisZ ATP phosphoribosyltransferase regulatory subu	89.11
TIGR00457	453	asnS asparaginyl-tRNA synthetase. In a multiple se	88.99
cd00776	322	AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class	88.9
PRK05159	437	aspC aspartyl-tRNA synthetase; Provisional	88.81
PLN02850	530	aspartate-tRNA ligase	88.69
PRK00476	588	aspS aspartyl-tRNA synthetase; Validated	88.52
TIGR00459	583	aspS_bact aspartyl-tRNA synthetase, bacterial type	88.51
PF13590	151	DUF4136: Domain of unknown function (DUF4136)	88.47
KOG0555|consensus	545		88.3
PTZ00417	585	lysine-tRNA ligase; Provisional	88.25
TIGR00499	496	lysS_bact lysyl-tRNA synthetase, eukaryotic and no	88.13
PRK03932	450	asnC asparaginyl-tRNA synthetase; Validated	87.94
PTZ00425	586	asparagine-tRNA ligase; Provisional	87.37
PRK12445	505	lysyl-tRNA synthetase; Reviewed	87.29
PRK12820	706	bifunctional aspartyl-tRNA synthetase/aspartyl/glu	87.0
PRK00484	491	lysS lysyl-tRNA synthetase; Reviewed	86.29
PLN02502	553	lysyl-tRNA synthetase	86.07
PTZ00385	659	lysyl-tRNA synthetase; Provisional	84.96
PRK07080	317	hypothetical protein; Validated	84.4
PLN02903	652	aminoacyl-tRNA ligase	83.81

>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=99.93  E-value=1.5e-26  Score=171.50  Aligned_cols=75  Identities=35%  Similarity=0.598  Sum_probs=73.3

Q ss_pred             CCCcccccccchhccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCCCCccccccC
Q psy10664          1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKM   75 (75)
Q Consensus         1 ~l~~~d~~~~~k~~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~i   75 (75)
                      ++|++||++|+|+||+||||++|+||+|++||+||++|++.++||+++.||+||+.+++.+|||+|+|+|+||+|
T Consensus       149 ~l~~~Df~~aaKvsGsrf~~~~~~~a~L~rAL~~f~ld~~~~~Gf~e~~~P~lv~~e~m~gtgqlpkf~e~~y~v  223 (429)
T COG0172         149 KLGLLDFERAAKVSGSRFYFYKGKGARLERALIQFMLDLHTKHGFTEVLPPYLVNLESMFGTGQLPKFEEDLYKV  223 (429)
T ss_pred             hcCcchhhhhcccCCCceEEEcCHHHHHHHHHHHHHHHHHHHcCceEeeCceeecHHHhhccCCCCCCcccceEe
Confidence            478999999999999999999999999999999999999999999999999999999999999999999999986

>PLN02678 seryl-tRNA synthetase

Probab=99.93  E-value=5.1e-26  Score=169.44  Aligned_cols=75  Identities=60%  Similarity=0.988  Sum_probs=73.2

Q ss_pred             CCCcccccccchhccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCCCCccccccC
Q psy10664          1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKM   75 (75)
Q Consensus         1 ~l~~~d~~~~~k~~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~i   75 (75)
                      +||++||++|++++|++||||+|+||+|++||++|++|.+.++||++|.||+|+++++|++|||||+|+|+||+|
T Consensus       149 ~l~l~d~~~~~~vsG~~~y~l~g~ga~L~~AL~~y~ld~~~~~Gy~~V~~P~lv~~~~~~~sG~~~~f~e~my~i  223 (448)
T PLN02678        149 LLGIVDTERGADVAGGRGYYLKGAGVLLNQALINFGLAFLRKRGYTPLQTPFFMRKDVMAKCAQLAQFDEELYKV  223 (448)
T ss_pred             hccCccchhhhhhcCceeEEECCHHHHHHHHHHHHHHHHHHHcCCEEEECcccccHHHHhhcCCcccchhcCcee
Confidence            479999999999999999999999999999999999999999999999999999999999999999999999986

>TIGR00414 serS seryl-tRNA synthetase

Probab=99.90  E-value=3.5e-24  Score=158.08  Aligned_cols=75  Identities=28%  Similarity=0.643  Sum_probs=73.1

Q ss_pred             CCCcccccccchhccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCCCCccccccC
Q psy10664          1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKM   75 (75)
Q Consensus         1 ~l~~~d~~~~~k~~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~i   75 (75)
                      ++|++||++|++++|+|||+|+|+|++|++||++|+++.+.++||++|.||.|++.++|++||||++|+++||+|
T Consensus       148 ~l~l~d~~~~~~~~G~g~~~~~p~g~~l~~aL~~~~~~~~~~~G~~~v~~P~lv~~~~~~~~G~~~~f~~~~y~i  222 (418)
T TIGR00414       148 KLGGLDFDRAVKVTGSRFYYLKNDGAKLERALINFMLDLLEKNGYQEIYPPYLVNEESLDGTGQLPKFEEDIFKL  222 (418)
T ss_pred             hCCCccccccccCCCCCeeeeccHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCccccccccceEe
Confidence            479999999999999999999999999999999999999999999999999999999999999999999999985

This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.

>PRK05431 seryl-tRNA synthetase; Provisional

Probab=99.90  E-value=3.6e-24  Score=158.31  Aligned_cols=75  Identities=37%  Similarity=0.626  Sum_probs=72.9

Q ss_pred             CCCcccccccchhccCcceeecchHHHHHHHHHHHHHHHHH-hCCCeeeccCccchHHHHHHcCCCCCCccccccC
Q psy10664          1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWI-EKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKM   75 (75)
Q Consensus         1 ~l~~~d~~~~~k~~G~~~~~l~~~ga~L~~aL~~f~~~~~~-~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~i   75 (75)
                      ++||+||++|++++|+|||+|+|+|++|++||++|+++.+. ++||++|.||.|++.++|++|||+|+|+++||+|
T Consensus       145 ~l~l~d~~~~~~~~G~g~~~l~p~ga~L~~aL~~~~~~~~~~~~G~~ev~~P~lv~~~~~~~~G~~~~f~~~ly~i  220 (425)
T PRK05431        145 KLGILDFERAAKVSGSRFYVLKGDGARLERALIQFMLDLHTEEHGYTEVIPPYLVNEESMYGTGQLPKFEEDLYKI  220 (425)
T ss_pred             hcCceecccccccCCceeEEECcHHHHHHHHHHHHHHHHHHHhcCCEEEeccccccHHHHhhcCccccchhhceEe
Confidence            47999999999999999999999999999999999999999 9999999999999999999999999999999975

>PLN02320 seryl-tRNA synthetase

Probab=99.90  E-value=3.9e-24  Score=161.10  Aligned_cols=75  Identities=36%  Similarity=0.587  Sum_probs=72.2

Q ss_pred             CCCcccccccchhccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCCCCcc-ccccC
Q psy10664          1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDE-ELYKM   75 (75)
Q Consensus         1 ~l~~~d~~~~~k~~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e-~~y~i   75 (75)
                      +||++||++|++++|++|||+.|.||+|++||++|++|.+.++||++|+||+||++++|++|||+|++++ ++|+|
T Consensus       208 ~L~Lfdf~~aakvsG~~f~~L~g~~a~Le~ALi~f~ld~~~~~Gy~eV~tP~lv~~~l~~~sG~~p~~e~~~~y~i  283 (502)
T PLN02320        208 ELDLFDFDAAAEVSGSKFYYLKNEAVLLEMALVNWTLSEVMKKGFTPLTTPEIVRSSVVEKCGFQPRGDNTQVYSI  283 (502)
T ss_pred             HcCCccccchhhcCCCeeEEeCCHHHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHHHhcCCCcccccCceeEE
Confidence            4799999999999999999999999999999999999999999999999999999999999999999988 88875

>KOG2509|consensus

Probab=99.89  E-value=8.8e-24  Score=156.49  Aligned_cols=73  Identities=52%  Similarity=0.803  Sum_probs=70.5

Q ss_pred             CCcccccccchhccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCCCCcccccc
Q psy10664          2 IDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYK   74 (75)
Q Consensus         2 l~~~d~~~~~k~~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~   74 (75)
                      +|++|+++|+++||+|+||++|+||+|++||+||+++++.++||++++||+|+|++++++||++|.|++++|+
T Consensus       161 ~~~~~~~~~a~vsG~r~Yyl~g~~a~LeqALi~yal~~l~~kGy~pl~~P~i~rkeVm~~cg~~~~~d~~~~y  233 (455)
T KOG2509|consen  161 LGFIDLERGAKVSGHRGYYLKGAGAFLEQALINYALDFLNAKGYTPLTTPDILRKEVMQKCGQLPRFDEEQYY  233 (455)
T ss_pred             cccccccchhhcccccceEEcCHHHHHHHHHHHHHHHHHHHcCCccccCchhhhHHHHHHhccCcCCCcceEE
Confidence            5788999999999999999999999999999999999999999999999999999999999999999987765

>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain

Probab=99.88  E-value=3.3e-23  Score=146.86  Aligned_cols=75  Identities=45%  Similarity=0.793  Sum_probs=73.0

Q ss_pred             CCCcccccccchhccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCCCCccccccC
Q psy10664          1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKM   75 (75)
Q Consensus         1 ~l~~~d~~~~~k~~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~i   75 (75)
                      ++|++|++++++++|+|+|+|+|+|++|+++|++|+++++.+.||++|.+|.|++.++|++||||+.|+++||+|
T Consensus        27 ~~~l~d~~~~~~~~G~g~~~~~p~g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~l~~~sg~~~~~~~~~f~v  101 (297)
T cd00770          27 KLDILDFERGAKVSGSRFYYLKGDGALLERALINFALDFLTKRGFTPVIPPFLVRKEVMEGTGQLPKFDEQLYKV  101 (297)
T ss_pred             HCCCccchhhcccCCCceeEECCHHHHHHHHHHHHHHHHHHHCCCEEEECcccccHHHHhhcCcCccChhcccEe
Confidence            479999999999999999999999999999999999999999999999999999999999999999999999975

SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer.

>PLN02837 threonine-tRNA ligase

Probab=99.85  E-value=8.9e-22  Score=150.62  Aligned_cols=72  Identities=21%  Similarity=0.313  Sum_probs=69.2

Q ss_pred             CCCcccccccchhccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCCCCccccccC
Q psy10664          1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKM   75 (75)
Q Consensus         1 ~l~~~d~~~~~k~~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~i   75 (75)
                      +|+|+||++   .+|+|+|+|+|+|++|+++|++|+++.+.++||++|.||.|++.++|++||||++|+|+||++
T Consensus       225 ~l~lf~~~~---~~g~G~~~~~p~G~~l~~~L~~~~~~~~~~~G~~~v~tP~l~~~~l~~~sGh~~~~~~~mf~~  296 (614)
T PLN02837        225 DLDLFSIQD---DAGGGLVFWHPKGAIVRHIIEDSWKKMHFEHGYDLLYTPHVAKADLWKTSGHLDFYKENMYDQ  296 (614)
T ss_pred             HcCCcccCc---CcCCcceEEechHHHHHHHHHHHHHHHHHHCCCEEEECCccCCHHHHhhcCCcccchhhcccc
Confidence            479999998   499999999999999999999999999999999999999999999999999999999999974

>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain

Probab=99.75  E-value=2.4e-18  Score=121.90  Aligned_cols=72  Identities=15%  Similarity=0.204  Sum_probs=69.2

Q ss_pred             CCCcccccccchhccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCCCCccccccC
Q psy10664          1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKM   75 (75)
Q Consensus         1 ~l~~~d~~~~~k~~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~i   75 (75)
                      +++++||+++   +|+|+++|+|+|+.++++|++++++.+.++||++|.||.|++.++|++|||++.|+++||++
T Consensus         8 ~~~l~~~~~~---~~~G~~~~~p~g~~l~~~l~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sg~~~~~~~~my~~   79 (298)
T cd00771           8 ELELFFFFDE---AGPGLPFWLPKGAIIRNELEDFLRELQRKRGYQEVETPIIYNKELWETSGHWDHYRENMFPF   79 (298)
T ss_pred             HcCCcccCCC---CCCcceEEcccHHHHHHHHHHHHHHHHHHcCCEEEECCeecCHHHHhhCCCccccccCceEe
Confidence            4789999986   89999999999999999999999999999999999999999999999999999999999975

ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.

>PRK00960 seryl-tRNA synthetase; Provisional

Probab=99.73  E-value=3.6e-18  Score=129.30  Aligned_cols=70  Identities=19%  Similarity=0.267  Sum_probs=65.0

Q ss_pred             CCCcccccccchhccCcceeecchHHHHHHHHHHHHHHHH-HhCCCeeeccCccchHHHHHHcCCCCCCccccccC
Q psy10664          1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKW-IEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKM   75 (75)
Q Consensus         1 ~l~~~d~~~~~k~~G~~~~~l~~~ga~L~~aL~~f~~~~~-~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~i   75 (75)
                      ++||+|     +++|+|+|+|+|+|+.|++||++|+++.+ .+.||++|.+|.|++.++|++|||+++|.++||.|
T Consensus       203 ~~glld-----k~~G~G~~~~~p~Ga~L~~aL~~~i~d~~~~k~Gyeev~~P~Li~~ell~ksGhl~~F~e~my~V  273 (517)
T PRK00960        203 KLGWVK-----RFPGRGQWFYTPPMTKLFRAFEKLVIEEVLKPLGFDECLFPKLIPLEVMYKMRYLEGLPEGMYYV  273 (517)
T ss_pred             HCCCcc-----ccCCCceEEEEChHHHHHHHHHHHHHHhhHhhcCCeEEECCcccCHHHHhhcCCccCChhhceEe
Confidence            367888     68999999999999999999999999985 56799999999999999999999999999999975

>PRK14799 thrS threonyl-tRNA synthetase; Provisional

Probab=99.72  E-value=7.1e-18  Score=128.24  Aligned_cols=72  Identities=13%  Similarity=0.223  Sum_probs=68.9

Q ss_pred             CCCcccccccchhccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCCCCccccccC
Q psy10664          1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKM   75 (75)
Q Consensus         1 ~l~~~d~~~~~k~~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~i   75 (75)
                      +|+|+||++   .+|+|+++|+|+|+.|+++|++|+++.+.++||++|.||.|.+.++|+.|||+++|+|+||.+
T Consensus       146 ~l~lf~~~~---~~~~G~~~~lP~G~~i~~~L~~~~r~~~~~~Gy~eV~TP~i~~~eL~k~SGh~~~y~~~mf~~  217 (545)
T PRK14799        146 KLDLFSFHE---EAGSGLVLFHPKGQTIRNELIAFMREINDSMGYQEVYTSHVFKTDIWKISGHYTLYRDKLIVF  217 (545)
T ss_pred             HcCCccccc---ccCCcceEEcChHHHHHHHHHHHHHHHHHHcCCeEEECCccchHHHHhhccccccchhhccee
Confidence            479999998   689999999999999999999999999999999999999999999999999999999999963

>PLN02908 threonyl-tRNA synthetase

Probab=99.71  E-value=1.5e-17  Score=128.68  Aligned_cols=71  Identities=13%  Similarity=0.230  Sum_probs=66.9

Q ss_pred             CCCcccccccchhccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCCCCccccccC
Q psy10664          1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKM   75 (75)
Q Consensus         1 ~l~~~d~~~~~k~~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~i   75 (75)
                      ++++++|++.    ++|+++|+|.|++|+++|++|+++.+.++||++|.||.|++.++|++||||++|+|+||.+
T Consensus       300 ~~~lf~~~~~----~~G~~~~lP~g~~i~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sGh~~~~~~~mf~~  370 (686)
T PLN02908        300 KQELFFFHEL----SPGSCFFLPHGARIYNKLMDFIREQYWERGYDEVITPNIYNMDLWETSGHAAHYKENMFVF  370 (686)
T ss_pred             hcCCeeecCC----CCcceEEechHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHhhcCCccccchhccEE
Confidence            3689999984    5889999999999999999999999999999999999999999999999999999999973

>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain

Probab=99.68  E-value=5.3e-17  Score=113.26  Aligned_cols=70  Identities=11%  Similarity=0.148  Sum_probs=64.3

Q ss_pred             CCCcccccccchhccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHH-HHcCCCCCCccccccC
Q psy10664          1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVM-QEVAQLAQFDEELYKM   75 (75)
Q Consensus         1 ~l~~~d~~~~~k~~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~-~~sG~~~~~~e~~y~i   75 (75)
                      ++|++|++.     .+|+|+|+|.|++++++|++++++.+.+.||++|.||.|++.++| ++|||+++|+++||++
T Consensus        12 ~~~~~d~~~-----~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~sg~~~~f~~~~f~~   82 (261)
T cd00778          12 KAELIDYGP-----VKGCMVFRPYGYAIWENIQKILDKEIKETGHENVYFPLLIPESELEKEKEHIEGFAPEVAWV   82 (261)
T ss_pred             HhCCcccCC-----CCCeEEEcccHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhhhcchhhcCcceEEE
Confidence            468888863     458999999999999999999999999999999999999999998 5799999999999974

ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria.

>TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family

Probab=99.67  E-value=5.6e-17  Score=122.74  Aligned_cols=70  Identities=16%  Similarity=0.293  Sum_probs=64.2

Q ss_pred             CCCcccccccchhccCcceeecchHHHHHHHHHHHHHHHHHh-CCCeeeccCccchHHHHHHcCCCCCCccccccC
Q psy10664          1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIE-KGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKM   75 (75)
Q Consensus         1 ~l~~~d~~~~~k~~G~~~~~l~~~ga~L~~aL~~f~~~~~~~-~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~i   75 (75)
                      ++||+|     |++|+|||+|+|.|+.|++||++|++|.+.+ .||++|.+|.|++.+++++|||+++|.++||.|
T Consensus       203 k~glid-----k~~G~G~~vl~p~ga~L~rAL~~~~ld~~~~k~Gy~ev~fP~LIp~e~l~k~ghl~gF~~e~y~V  273 (520)
T TIGR00415       203 KLGWVK-----KFPGRGQWFYGPKITALFRALEEFFIEEIVKKIGFQECLFPKLIPLDIMNKMRYLEGLPEGMYYC  273 (520)
T ss_pred             HCCCee-----EEcccCEEEEeCHHHHHHHHHHHHHHHHHHHhcCCeEEeCCcEecHHHHcccCCCCCCchhheEE
Confidence            357775     6899999999999999999999999998864 599999999999999999999999999999964

The seryl-tRNA synthetases from a few of the Archaea, represented by this model, are very different from the set of mutually more closely related seryl-tRNA synthetases from Eubacteria, Eukaryotes, and other Archaea. Although distantly homologous, the present set differs enough not to be recognized by the pfam model tRNA-synt_2b that recognizes the remainder of seryl-tRNA synthetases among oither class II amino-acyl tRNA synthetases.

>KOG1637|consensus

Probab=99.65  E-value=6.8e-17  Score=121.35  Aligned_cols=62  Identities=16%  Similarity=0.367  Sum_probs=59.8

Q ss_pred             ccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCCCCccccccC
Q psy10664         14 AGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKM   75 (75)
Q Consensus        14 ~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~i   75 (75)
                      -.||++||.|.|+++.++|+.|++.+.++|||++|+||.|-++++|+.||||++|+||||++
T Consensus       180 lSPGS~FflP~G~~iyN~Lv~fir~ey~~rGf~EVitPniy~~~LWe~SGHwqnY~enmF~~  241 (560)
T KOG1637|consen  180 LSPGSCFFLPHGTRIYNTLVDFIRAEYRKRGFTEVITPNIYNKKLWETSGHWQNYSENMFKF  241 (560)
T ss_pred             CCCcceeeccCcchHHHHHHHHHHHHHHhcCCceecCcchhhhhhhhhccchhhhhhhceee
Confidence            36899999999999999999999999999999999999999999999999999999999975

>PRK03991 threonyl-tRNA synthetase; Validated

Probab=99.62  E-value=6.1e-16  Score=118.97  Aligned_cols=72  Identities=17%  Similarity=0.138  Sum_probs=68.1

Q ss_pred             CCCcccccccchhccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCCCCccccccC
Q psy10664          1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKM   75 (75)
Q Consensus         1 ~l~~~d~~~~~k~~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~i   75 (75)
                      ++|++|++.+   +++|.++|+|+|++|.++|++|+++.+.+.||++|.||.|++.++|+.+||+++|+|+||.+
T Consensus       205 ~~~L~d~~~~---s~~G~~~~~P~G~~i~~~L~~~~~~~~~~~G~~~V~tP~~~~~~~~~~sgh~~~f~e~my~v  276 (613)
T PRK03991        205 EKELADYEPA---SDVGHMRYYPKGRLIRDLLEDYVYNLVVELGAMPVETPIMYDLSHPAIREHADKFGERQYRV  276 (613)
T ss_pred             HCCCcccccc---cCeeeEEEEcHHHHHHHHHHHHHHHHHHHCCCEEEECCeecChhHHhhcccccccchhceEe
Confidence            4789999884   78889999999999999999999999999999999999999999999999999999999975

>TIGR00418 thrS threonyl-tRNA synthetase

Probab=99.61  E-value=1.2e-15  Score=114.98  Aligned_cols=72  Identities=17%  Similarity=0.234  Sum_probs=68.8

Q ss_pred             CCCcccccccchhccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCCCCccccccC
Q psy10664          1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKM   75 (75)
Q Consensus         1 ~l~~~d~~~~~k~~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~i   75 (75)
                      ++|++|++++   +|+|++.|+|+|+.+.++|++++++.+.++||++|.||.+.+.++|+.|||++.|+++||++
T Consensus       178 ~~~l~~~~~~---~~~G~~~~~p~g~~~~~~i~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~emy~~  249 (563)
T TIGR00418       178 ELELFSFEPE---IGPGLPFWLPKGATIRNLLEDFVRQKQIKYGYMEVETPIMYDLELWEISGHWDNYKERMFPF  249 (563)
T ss_pred             hCCCcccCcc---cCCcceEEeccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhcCCcccchhhccee
Confidence            4799999975   89999999999999999999999999999999999999999999999999999999999974

This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..

>PRK12305 thrS threonyl-tRNA synthetase; Reviewed

Probab=99.61  E-value=1.5e-15  Score=114.83  Aligned_cols=72  Identities=14%  Similarity=0.277  Sum_probs=68.5

Q ss_pred             CCCcccccccchhccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCCCCccccccC
Q psy10664          1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKM   75 (75)
Q Consensus         1 ~l~~~d~~~~~k~~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~i   75 (75)
                      +++++|++.   .+|+|+++|+|+|+.+.++|++++++...++||++|.||.+.+.++|++|||++.|+++||++
T Consensus       184 ~~~l~~~~~---~~~~G~~~~~p~~~~~~~~l~~~~~~~~~~~Gy~ev~tP~le~~~l~~~sg~~~~~~~~my~~  255 (575)
T PRK12305        184 ELDLFSFPD---EIGPGLPVWHPKGAIIRREIEDYLRKEHLKRGYEFVYTPHIGKSDLWKTSGHLDNYKENMFPP  255 (575)
T ss_pred             hcCcccccc---ccCCcceEEeccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhcCCcccchhhcccc
Confidence            368999987   689999999999999999999999999999999999999999999999999999999999974

>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=99.57  E-value=1.3e-15  Score=116.84  Aligned_cols=71  Identities=17%  Similarity=0.232  Sum_probs=67.4

Q ss_pred             CCCcccccccchhccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCCCCcccccc
Q psy10664          1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYK   74 (75)
Q Consensus         1 ~l~~~d~~~~~k~~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~   74 (75)
                      +|++++++.   ..|+|+++|+++|+.+.+.|++|+++.+.+.||.+|.||.|++.++|+.||||++|+|+||.
T Consensus       198 el~LF~~~~---~~~~G~~~~~pkG~~ir~~le~y~~~~~~~~Gy~~V~TP~~~~~~l~~~SGH~~~y~e~mf~  268 (589)
T COG0441         198 ELDLFSFSP---EEGPGLPFWHPKGATIRNLLEDYVRTKLRSYGYQEVKTPVLADLELWELSGHWDNYKEDMFL  268 (589)
T ss_pred             hhcceeecc---ccCCcceEECCCcccHHHHHHHHHHHHHHhcCceEecCCeeeecccchhccchhhcccccee
Confidence            368888885   48999999999999999999999999999999999999999999999999999999999996

>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain

Probab=99.55  E-value=1e-14  Score=101.48  Aligned_cols=63  Identities=11%  Similarity=0.142  Sum_probs=60.7

Q ss_pred             hccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCCCCccccccC
Q psy10664         13 VAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKM   75 (75)
Q Consensus        13 ~~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~i   75 (75)
                      .+++|++.|+|.|+.+.++|++++++.+.+.||++|.||.+.+.++|++|||++.|+++||++
T Consensus        18 ~~~~G~~~~lP~g~~l~~~i~~~~~~~~~~~G~~ei~~P~l~~~~~~~~sg~~~~~~~emy~~   80 (255)
T cd00779          18 QTSSGLYSWLPLGLRVLKKIENIIREEMNKIGAQEILMPILQPAELWKESGRWDAYGPELLRL   80 (255)
T ss_pred             cCCCceEEECchHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhcCCccccCcccEEE
Confidence            478999999999999999999999999999999999999999999999999999999999974

ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes.

>PRK12444 threonyl-tRNA synthetase; Reviewed

Probab=99.51  E-value=2.2e-14  Score=110.02  Aligned_cols=70  Identities=14%  Similarity=0.200  Sum_probs=65.9

Q ss_pred             CCCcccccccchhccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCCCCcccccc
Q psy10664          1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYK   74 (75)
Q Consensus         1 ~l~~~d~~~~~k~~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~   74 (75)
                      +|+++||++    .++|+++|+|+|+.+.+.|++|+++.+.++||++|.||.+++.++|++|||+++|+++||.
T Consensus       253 ~~~l~~~~~----~~~G~~~~~p~g~~~~~~i~~~~~~~~~~~G~~~v~tP~l~~~~l~~~sG~~~~~~~emy~  322 (639)
T PRK12444        253 ELELFMFSE----EAPGMPFYLPKGQIIRNELEAFLREIQKEYNYQEVRTPFMMNQELWERSGHWDHYKDNMYF  322 (639)
T ss_pred             HcCCccccc----ccCcceEEeeCHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhcCChhhhhhhcCe
Confidence            368999987    3778999999999999999999999999999999999999999999999999999999994

>PRK04173 glycyl-tRNA synthetase; Provisional

Probab=99.49  E-value=3.3e-14  Score=106.22  Aligned_cols=59  Identities=14%  Similarity=0.200  Sum_probs=56.9

Q ss_pred             CcceeecchHHHHHHHHHHHHHHHHHh--CCCeeeccCccchHHHHHHcCCCCCCcccccc
Q psy10664         16 GRGYFLKGPAVCLQVGLVQYALSKWIE--KGYTPLYTPFFMRKEVMQEVAQLAQFDEELYK   74 (75)
Q Consensus        16 ~~~~~l~~~ga~L~~aL~~f~~~~~~~--~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~   74 (75)
                      +|||.+.|.|+.|.+.|++|+++.+.+  .||.+|.||.|++.++|+.||||++|.|+||+
T Consensus        28 ~g~~d~~P~G~~l~~~i~~~~r~~~~~~~~~~~ev~tp~i~~~~l~~~SGH~~~f~d~m~~   88 (456)
T PRK04173         28 AGFWDYGPLGVELKNNIKRAWWKSFVQEREDVVGIDSPIIMPPEVWEASGHVDNFSDPLVE   88 (456)
T ss_pred             hcccccChhhHHHHHHHHHHHHHHHHhccCCEEEEeccccCCHHHHhhcCCccccCCceeE
Confidence            678999999999999999999999987  79999999999999999999999999999996

>PRK12325 prolyl-tRNA synthetase; Provisional

Probab=99.48  E-value=6.4e-14  Score=103.91  Aligned_cols=62  Identities=8%  Similarity=0.120  Sum_probs=60.3

Q ss_pred             ccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCCCCccccccC
Q psy10664         14 AGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKM   75 (75)
Q Consensus        14 ~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~i   75 (75)
                      .++|+++|+|.|+++.++|++++++.+.+.||++|.||.|.+.++|+.||||+.|+++||++
T Consensus        35 ~~~G~~~~lP~g~~i~~~i~~~i~~~~~~~G~~ev~~P~l~~~~l~~~sg~~~~~~~emf~~   96 (439)
T PRK12325         35 QAAGIYSWLPLGLKVLKKIENIVREEQNRAGAIEILMPTIQPADLWRESGRYDAYGKEMLRI   96 (439)
T ss_pred             cCCceEEECCcHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHhhcCCccccchhheEE
Confidence            58999999999999999999999999999999999999999999999999999999999974

>PRK00413 thrS threonyl-tRNA synthetase; Reviewed

Probab=99.40  E-value=4.8e-13  Score=102.10  Aligned_cols=71  Identities=17%  Similarity=0.259  Sum_probs=66.1

Q ss_pred             CCCcccccccchhccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCCCCccccccC
Q psy10664          1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKM   75 (75)
Q Consensus         1 ~l~~~d~~~~~k~~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~i   75 (75)
                      ++++++|+..+    +|+++|+|+|+.+.++|++++++.+.++||++|.||.+.+.++|..|||++.++++||++
T Consensus       249 ~~~~~~~~~~~----~G~~~~lp~~~~~~~~i~~~~~~~~~~~Gy~ei~tP~le~~~l~~~~g~~~~~~~~my~~  319 (638)
T PRK00413        249 ELDLFHFQEEA----PGLPFWHPKGWTIRRELERYIRRKLRKAGYQEVKTPQILDRELWETSGHWDHYRENMFPT  319 (638)
T ss_pred             hcCEEEecCCC----CcceEEcccHHHHHHHHHHHHHHHHHHCCCEEEECCeeCCHHHHHhcCChhhhhhcccee
Confidence            36788888853    889999999999999999999999999999999999999999999999999999999974

>PRK08661 prolyl-tRNA synthetase; Provisional

Probab=99.39  E-value=6.1e-13  Score=99.69  Aligned_cols=70  Identities=13%  Similarity=0.189  Sum_probs=64.0

Q ss_pred             CCCcccccccchhccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHH-cCCCCCCccccccC
Q psy10664          1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQE-VAQLAQFDEELYKM   75 (75)
Q Consensus         1 ~l~~~d~~~~~k~~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~-sG~~~~~~e~~y~i   75 (75)
                      +.+++|.+.   +  +|+++|+|.|+.+.++|++++.+.+.+.||++|.+|.+++.++|++ +||++.|+++||.|
T Consensus        24 ~~~l~d~~~---v--~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~~~v   94 (477)
T PRK08661         24 KAELADYSP---V--KGCMVIKPYGYAIWENIQKILDKLFKETGHENVYFPLLIPESLLEKEKEHVEGFAPEVAWV   94 (477)
T ss_pred             HccCcccCC---C--CceEEECccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhhcCchhhcccccEEE
Confidence            357888877   2  5899999999999999999999999999999999999999999964 99999999999974

>PRK09194 prolyl-tRNA synthetase; Provisional

Probab=99.38  E-value=7.8e-13  Score=100.60  Aligned_cols=62  Identities=13%  Similarity=0.148  Sum_probs=60.1

Q ss_pred             ccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCCCCccccccC
Q psy10664         14 AGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKM   75 (75)
Q Consensus        14 ~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~i   75 (75)
                      +++|+|.|+|.|+++.++|++++++.+.+.||++|.+|.+.+.++|++||||+.|.++||++
T Consensus        35 ~~~G~~~~lP~g~~~~~~i~~~i~~~~~~~G~~ei~~P~l~~~~l~~~sg~~~~~~~emf~~   96 (565)
T PRK09194         35 LASGIYTYLPLGLRVLRKIENIVREEMNKIGAQEVLMPALQPAELWQESGRWEEYGPELLRL   96 (565)
T ss_pred             cCCCeeEECccHHHHHHHHHHHHHHHHHHcCCEEEECcccCcHHHHhhcCCccccchhceEE
Confidence            68999999999999999999999999999999999999999999999999999999999974

>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain

Probab=99.35  E-value=2.4e-12  Score=90.28  Aligned_cols=60  Identities=17%  Similarity=0.085  Sum_probs=56.6

Q ss_pred             cCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCCCCc-ccccc
Q psy10664         15 GGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFD-EELYK   74 (75)
Q Consensus        15 G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~-e~~y~   74 (75)
                      ++|++.|+|.|+.+.+.|++++.+.+.+.||++|.||.+++.++|++||+++++. ++||.
T Consensus        21 ~~G~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~~~g~~~~~~~~e~~~   81 (264)
T cd00772          21 GRGIINFLPLAKAILDKIENVLDKMFKEHGAQNALFPFFILASFLEKEAEHDEGFSKELAV   81 (264)
T ss_pred             CCCEEEECCcHHHHHHHHHHHHHHHHHHcCCeEEECCeeccHHHHhhcCCcccccCccceE
Confidence            8899999999999999999999999999999999999999999999999999954 67775

ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.

>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II

Probab=99.31  E-value=3.9e-12  Score=97.31  Aligned_cols=63  Identities=14%  Similarity=0.152  Sum_probs=60.7

Q ss_pred             hccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCCCCccccccC
Q psy10664         13 VAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKM   75 (75)
Q Consensus        13 ~~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~i   75 (75)
                      .+++|+|.|+|.|+++.++|++++++++.+.||++|.+|.+.+.++|+.||||+.|.++||++
T Consensus        34 ~~~~G~~~~lP~g~rv~~~I~~~i~~~~~~~G~~ei~~P~l~~~el~~~sg~~~~~~~emf~~   96 (568)
T TIGR00409        34 RLGSGLYNWLPLGLRVLKKVENIVREEMNKDGAIEVLLPALQPAELWQESGRWDTYGPELLRL   96 (568)
T ss_pred             ccCCceEEECChHHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHHhhcCCCCccchhcEEE
Confidence            468999999999999999999999999999999999999999999999999999999999974

Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi.

>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I

Probab=99.22  E-value=1.9e-11  Score=91.65  Aligned_cols=69  Identities=13%  Similarity=0.167  Sum_probs=62.2

Q ss_pred             CCcccccccchhccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHc-CCCCCCccccccC
Q psy10664          2 IDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEV-AQLAQFDEELYKM   75 (75)
Q Consensus         2 l~~~d~~~~~k~~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~s-G~~~~~~e~~y~i   75 (75)
                      .|++|...     .+|+++|+|.|+.+.+.|++++.+.+.+.||++|.+|.+++.++|+++ +|++.|+++||.|
T Consensus        19 ~~li~~~~-----~~G~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~f~v   88 (472)
T TIGR00408        19 AEIIDYYP-----VKGCYVWLPYGFKIWKNIQKILRNILDEIGHEEVYFPMLIPESELAKEKDHIKGFEPEVYWI   88 (472)
T ss_pred             cCCccccC-----CCceEEECcCHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhhcchhhhcchhcEEE
Confidence            57777633     477899999999999999999999999999999999999999999986 5999999999975

Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae.

>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes

Probab=99.09  E-value=3.2e-11  Score=78.93  Aligned_cols=48  Identities=21%  Similarity=0.531  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHHH-hCCCeeeccCccchHHHHHHcCCCCCCccccccC
Q psy10664         28 LQVGLVQYALSKWI-EKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKM   75 (75)
Q Consensus        28 L~~aL~~f~~~~~~-~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~i   75 (75)
                      |+++|++++++.+. +.||++|.+|.|+++++|++|||++.|.++||.+
T Consensus         1 l~~~l~~~~~~~~~~~~G~~ev~~P~l~~~~~~~~sg~~~~~~~~~~~~   49 (173)
T PF00587_consen    1 LRNALERFIREEFVLKFGFQEVDTPILIPSEVWEKSGHWDNFSDEMFKV   49 (173)
T ss_dssp             HHHHHHHHHHHHHHHHTTEEEEB--SEEEHHHHHHHSHHHHHGGGSEEE
T ss_pred             CHHHHHHHHHHHhHHhcCCEEEECCeEEehHHhhhccccccccCCeeee
Confidence            68999999999999 9999999999999999999999999999999974

seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B ....

>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain

Probab=98.99  E-value=6.9e-10  Score=74.78  Aligned_cols=51  Identities=20%  Similarity=0.393  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCCCCccccccC
Q psy10664         25 AVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKM   75 (75)
Q Consensus        25 ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~i   75 (75)
                      |+.+.++|++++.+...++||++|.||.|.+.++|+++||++.++++||++
T Consensus         1 ~~~~~~~l~~~~~~~~~~~G~~ei~~P~l~~~~~~~~~~~~~~~~~~~~~~   51 (235)
T cd00670           1 GTALWRALERFLDDRMAEYGYQEILFPFLAPTVLFFKGGHLDGYRKEMYTF   51 (235)
T ss_pred             CHHHHHHHHHHHHHHHHHcCCEEEECCeEcCHHHHhhcCCcccchhhcCee
Confidence            689999999999999999999999999999999999999999999999974

This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.

>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=98.47  E-value=2.7e-07  Score=70.33  Aligned_cols=62  Identities=13%  Similarity=0.148  Sum_probs=59.7

Q ss_pred             ccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCCCCccccccC
Q psy10664         14 AGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKM   75 (75)
Q Consensus        14 ~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~i   75 (75)
                      ..+|.|.|+|-|.++.+.+++.+++++.+.|-++|.-|.+...++|+.||||..|.+.||.|
T Consensus        35 ~~~G~y~~lP~g~rv~~kI~~iir~em~~~G~~Evl~P~L~p~eLwkEs~r~~~f~~El~~v   96 (500)
T COG0442          35 PVKGLYVWLPLGLRVLEKIENIIREEMDKIGAQEVLFPTLIPAELWKESGRWEGFGPELFRV   96 (500)
T ss_pred             ccCceEEECccHHHHHHHHHHHHHHHHHhcCceEEechhcCHHHHHHHhChhhhcchhhEEE
Confidence            67899999999999999999999999999999999999999999999999999999999864

>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type

Probab=98.19  E-value=3.1e-06  Score=65.24  Aligned_cols=59  Identities=12%  Similarity=0.106  Sum_probs=54.1

Q ss_pred             cCcceeecchHHHHHHHHHHHHHHHHH-hCCCeeeccCccchHHHHHHcCCCCCCccccc
Q psy10664         15 GGRGYFLKGPAVCLQVGLVQYALSKWI-EKGYTPLYTPFFMRKEVMQEVAQLAQFDEELY   73 (75)
Q Consensus        15 G~~~~~l~~~ga~L~~aL~~f~~~~~~-~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y   73 (75)
                      -+|+|=|-|-|+.|.+.+++.+++... +.|+.+|.+|.|+++++|+.|||+.+|.|-|-
T Consensus        26 ~~g~~dygP~G~~lk~ni~~~wr~~~v~~~~~~ei~~~~i~~~~v~~aSGh~~~F~D~mv   85 (551)
T TIGR00389        26 LAGFWDYGPLGAVLKNNIKNAWRKFFIKNERVLEIDTPIITPEEVLKASGHVDNFTDWMV   85 (551)
T ss_pred             ccceeccCcchHHHHHHHHHHHHHHHHhcCCceEeeccccCCHHHHHhcCCccccCCcee
Confidence            368999999999999999999999774 78999999999999999999999999988663

This model describes a glycyl-tRNA synthetase distinct from the two alpha and two beta chains of the tetrameric E. coli glycyl-tRNA synthetase. This enzyme is a homodimeric class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes His, Ser, Pro, and this set of glycyl-tRNA synthetases.

>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain

Probab=98.08  E-value=6.1e-06  Score=57.48  Aligned_cols=53  Identities=8%  Similarity=0.025  Sum_probs=47.3

Q ss_pred             cCcceeecchHHHHHHHHHHHHHHHHHhCC--CeeeccCccchHHHHHHc-CCCCC
Q psy10664         15 GGRGYFLKGPAVCLQVGLVQYALSKWIEKG--YTPLYTPFFMRKEVMQEV-AQLAQ   67 (75)
Q Consensus        15 G~~~~~l~~~ga~L~~aL~~f~~~~~~~~G--y~~v~~P~i~~~~~~~~s-G~~~~   67 (75)
                      -+|++.|.|.|+.+.+.|++++++...+.|  |.+|.||.|.+.+++... |+..+
T Consensus        21 ~~G~~d~~P~g~~l~~~i~~~~~~~~~~~g~~~~~i~tP~i~~~~mf~~~~g~~d~   76 (254)
T cd00774          21 VAGFYDYGPLGVELKNNIKSAWRKSFVLEEEDMLEIDSPIITPELMFKTSIGPVES   76 (254)
T ss_pred             hhcccccCchHHHHHHHHHHHHHHHHHhcCCCeEEEeccccCCHHHheeeecccCC
Confidence            478999999999999999999999999885  999999999999998864 66543

GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly

>PRK00037 hisS histidyl-tRNA synthetase; Reviewed

Probab=98.05  E-value=6.6e-06  Score=60.04  Aligned_cols=60  Identities=12%  Similarity=0.125  Sum_probs=53.0

Q ss_pred             cCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHc-CCCC-CCcccccc
Q psy10664         15 GGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEV-AQLA-QFDEELYK   74 (75)
Q Consensus        15 G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~s-G~~~-~~~e~~y~   74 (75)
                      -.|+.-|.|.++...+.+++.+++...++||++|.||.+-..++|..+ |++. .++++||+
T Consensus         7 p~G~~d~~p~~~~~~~~i~~~i~~~~~~~Gy~ei~tP~le~~~~~~~~~g~~~~~~~~~~~~   68 (412)
T PRK00037          7 PRGTRDILPEESAKWQYVEDTIREVFERYGFSEIRTPIFEYTELFKRKVGEETDIVEKEMYT   68 (412)
T ss_pred             CCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCeEeeccccchHHHhccccCcccccccceeEE
Confidence            467889999999999999999999999999999999999999999764 7764 35677886

>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain

Probab=97.91  E-value=1.6e-05  Score=55.12  Aligned_cols=49  Identities=18%  Similarity=0.302  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCCCCccccccC
Q psy10664         26 VCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKM   75 (75)
Q Consensus        26 a~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~i   75 (75)
                      +.+.+.|++.+.+...++||++|.||.+...+++.+++ .+..+++||++
T Consensus         2 ~~~~~~l~~~l~~~f~~~Gy~~v~tP~le~~~~~~~~~-~~~~~~~~~~~   50 (261)
T cd00773           2 AALRRYIEDTLREVFERYGYEEIDTPVFEYTELFLRKS-GDEVSKEMYRF   50 (261)
T ss_pred             hHHHHHHHHHHHHHHHHcCCEEeeccceeeHHHhcccc-cccccceEEEE
Confidence            46788999999999999999999999999999999887 66777888863

HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain.

>CHL00201 syh histidine-tRNA synthetase; Provisional

Probab=97.80  E-value=3.5e-05  Score=57.27  Aligned_cols=60  Identities=13%  Similarity=0.145  Sum_probs=52.4

Q ss_pred             CcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHc-C-CCCCCccccccC
Q psy10664         16 GRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEV-A-QLAQFDEELYKM   75 (75)
Q Consensus        16 ~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~s-G-~~~~~~e~~y~i   75 (75)
                      .|+-=+.|+.+...+.+++-+++...++||++|.||.+=..+++..+ | +++.++++||++
T Consensus         8 ~G~~D~lp~~~~~~~~i~~~i~~~~~~~Gy~~I~TP~~E~~e~~~~~~G~~~~~~~~~my~~   69 (430)
T CHL00201          8 RGTKDILPDEINYWQFIHDKALTLLSLANYSEIRTPIFENSSLYDRGIGETTDIVNKEMYRF   69 (430)
T ss_pred             CCCCcCCHHHHHHHHHHHHHHHHHHHHcCCeeecCcccchHHHHhcccCCcccccccceEEE
Confidence            34556778999999999999999999999999999999999999875 5 777788899863

>TIGR00442 hisS histidyl-tRNA synthetase

Probab=97.70  E-value=6.8e-05  Score=54.58  Aligned_cols=59  Identities=12%  Similarity=0.113  Sum_probs=50.5

Q ss_pred             CcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcC-C-CCCCcccccc
Q psy10664         16 GRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVA-Q-LAQFDEELYK   74 (75)
Q Consensus        16 ~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG-~-~~~~~e~~y~   74 (75)
                      .|+.-|.|.++.+.+.+++.+.+...++||++|.||.+-..+++...+ . .+..+++||+
T Consensus         4 ~G~~d~~p~~~~~~~~i~~~i~~~f~~~Gy~~i~~P~le~~~~~~~~~g~~~~~~~~~~~~   64 (397)
T TIGR00442         4 RGTRDFLPEEMIKWQYIEETIREVFELYGFKEIRTPIFEYTELFARKVGEETDIVEKEMYT   64 (397)
T ss_pred             CCcCCCCHHHHHHHHHHHHHHHHHHHHcCCeEecCcccchHHHhhhccCccccccccceEE
Confidence            457789999999999999999999999999999999999999998764 2 2235567775

This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.

>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit

Probab=97.57  E-value=9.8e-05  Score=52.64  Aligned_cols=52  Identities=15%  Similarity=0.222  Sum_probs=46.7

Q ss_pred             ecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCCCCcccccc
Q psy10664         21 LKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYK   74 (75)
Q Consensus        21 l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~   74 (75)
                      +.|+.+.+.+.+++.+++...++||++|.||.+-..+++...++  ..+++||+
T Consensus         3 ~~p~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~le~~~~~~~~~~--~~~~~~~~   54 (314)
T TIGR00443         3 LLPEEAARKEEIERQLQDVFRSWGYQEIITPTLEYLDTLSAGGG--ILNEDLFK   54 (314)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHcCCeeccCcchhhHHHhcccCC--cchhceEE
Confidence            46789999999999999999999999999999999999998877  36777886

Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.

>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]

Probab=97.44  E-value=0.00019  Score=55.39  Aligned_cols=57  Identities=18%  Similarity=0.249  Sum_probs=51.4

Q ss_pred             CcceeecchHHHHHHHHHHHHHHHHH-h-CCCeeeccCccchHHHHHHcCCCCCCcccc
Q psy10664         16 GRGYFLKGPAVCLQVGLVQYALSKWI-E-KGYTPLYTPFFMRKEVMQEVAQLAQFDEEL   72 (75)
Q Consensus        16 ~~~~~l~~~ga~L~~aL~~f~~~~~~-~-~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~   72 (75)
                      +|||=+-|-|+.|.+.|++-+++... + .+.-+|-||.|+..++|+.|||..+|.|-|
T Consensus        30 ~GfyDYGPlG~~LK~nI~~~Wrk~fV~~~e~~~eIdtpii~p~~V~kASGHvd~FsDpl   88 (558)
T COG0423          30 AGFYDYGPLGVELKNNIKEAWRKSFVTEREDVVEIDTPIILPEEVWKASGHVDKFSDPL   88 (558)
T ss_pred             ccccccCCccHHHHHHHHHHHHHHHeeccCCeEEecccccCcHHHhhhcCcccccccce
Confidence            57888899999999999999998765 4 689999999999999999999999998854

>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed

Probab=97.37  E-value=0.00033  Score=52.64  Aligned_cols=48  Identities=8%  Similarity=0.350  Sum_probs=37.3

Q ss_pred             chHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCC--CCcccccc
Q psy10664         23 GPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLA--QFDEELYK   74 (75)
Q Consensus        23 ~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~--~~~e~~y~   74 (75)
                      +.+..|++++.+++.+    +||++|.||.|++.+.++.+|+.+  .+.++||+
T Consensus       204 ~~~s~Le~aIR~~f~~----~GF~EV~TPtLt~ee~~e~~g~~~g~~i~~~my~  253 (417)
T PRK09537        204 DYLGKLERDITKFFVD----RGFLEIKSPILIPAEYIERMGIDNDTELSKQIFR  253 (417)
T ss_pred             CHHHHHHHHHHHHHHH----CCCEEEECCeeecHHHHHHhCCCCcccchhhhee
Confidence            4566777777766665    899999999999999999999874  35556664

>PLN02734 glycyl-tRNA synthetase

Probab=97.30  E-value=0.00028  Score=55.82  Aligned_cols=57  Identities=11%  Similarity=0.264  Sum_probs=51.6

Q ss_pred             CcceeecchHHHHHHHHHHHHHHHHH-hCCCeeeccCccchHHHHHHcCCCCCCcccc
Q psy10664         16 GRGYFLKGPAVCLQVGLVQYALSKWI-EKGYTPLYTPFFMRKEVMQEVAQLAQFDEEL   72 (75)
Q Consensus        16 ~~~~~l~~~ga~L~~aL~~f~~~~~~-~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~   72 (75)
                      +|+|=+-|-|+.|.+.+++++++... +.+.-+|-+|.|+...+|+.|||..+|-|-|
T Consensus        99 aG~yDyGP~G~~lK~ni~~~Wr~~fv~~e~mleid~~~i~p~~V~kASGHvd~F~D~m  156 (684)
T PLN02734         99 AGLYDYGPPGCAVKSNVLAFWRQHFVLEENMLEVECPCVTPEVVLKASGHVDKFTDLM  156 (684)
T ss_pred             ccccccCcchHHHHHHHHHHHHHHHhccCCeeEeeccccCCHhHeeecCCccccccee
Confidence            57888999999999999999999654 6688899999999999999999999998855

>PRK14894 glycyl-tRNA synthetase; Provisional

Probab=97.00  E-value=0.0008  Score=52.00  Aligned_cols=57  Identities=14%  Similarity=0.112  Sum_probs=50.5

Q ss_pred             CcceeecchHHHHHHHHHHHHHHHHH--hCCCeeeccCccchHHHHHHcCCCCCCcccc
Q psy10664         16 GRGYFLKGPAVCLQVGLVQYALSKWI--EKGYTPLYTPFFMRKEVMQEVAQLAQFDEEL   72 (75)
Q Consensus        16 ~~~~~l~~~ga~L~~aL~~f~~~~~~--~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~   72 (75)
                      +|+|=+-|-|+.|.+.|++.+.+...  +.+..++-+|.|+++.+|+.|||..+|.|-|
T Consensus        30 ~g~~DyGPlG~~lk~ni~~~W~~~~v~~~~~~~~id~~il~~~~v~~aSGH~~~F~Dpm   88 (539)
T PRK14894         30 QGVYDYGPLGVELKNNIIADWWRTNVYERDDMEGLDAAILMNRLVWKYSGHEETFNDPL   88 (539)
T ss_pred             ccccCcCchhHHHHHHHHHHHHHHHeeccCCEEEeeccccCCHhHeeeccCCCCCCCce
Confidence            56788889999999999999998764  4577899999999999999999999998754

>PLN02530 histidine-tRNA ligase

Probab=96.94  E-value=0.0013  Score=49.67  Aligned_cols=57  Identities=12%  Similarity=0.099  Sum_probs=49.0

Q ss_pred             CcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHc-CCCCCCcccccc
Q psy10664         16 GRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEV-AQLAQFDEELYK   74 (75)
Q Consensus        16 ~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~s-G~~~~~~e~~y~   74 (75)
                      .|+.-|.|+.+.+.+.|++.+++....+||++|.||.+-..+++... |.  .-+++||+
T Consensus        74 ~G~~D~lp~~~~~~~~i~~~~~~~~~~~Gy~~I~tP~lE~~el~~~~~g~--~~~~~~y~  131 (487)
T PLN02530         74 KGTRDFPPEDMRLRNWLFDHFREVSRLFGFEEVDAPVLESEELYIRKAGE--EITDQLYN  131 (487)
T ss_pred             CCcCcCCHHHHHHHHHHHHHHHHHHHHcCCEeccccccchHHHhccccCc--ccccceEE
Confidence            45667889999999999999999999999999999999999999864 43  35567875

>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain

Probab=96.59  E-value=0.0037  Score=40.65  Aligned_cols=38  Identities=16%  Similarity=0.225  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCC
Q psy10664         29 QVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLA   66 (75)
Q Consensus        29 ~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~   66 (75)
                      ...+++.+++.+.++||++|.||.+++.+.++..|+.+
T Consensus         2 ~~~~~~~~r~~l~~~Gf~Ev~t~~l~~~~~~~~~~~~~   39 (211)
T cd00768           2 RSKIEQKLRRFMAELGFQEVETPIVEREPLLEKAGHEP   39 (211)
T ss_pred             HHHHHHHHHHHHHHcCCEEeEcceecHHHHHHHcCccH
Confidence            46788899999999999999999999999998887653

Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.

>PRK12420 histidyl-tRNA synthetase; Provisional

Probab=96.54  E-value=0.0048  Score=45.65  Aligned_cols=59  Identities=17%  Similarity=0.104  Sum_probs=49.7

Q ss_pred             CcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHH-cCCCCCCcccccc
Q psy10664         16 GRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQE-VAQLAQFDEELYK   74 (75)
Q Consensus        16 ~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~-sG~~~~~~e~~y~   74 (75)
                      .|+.=|.|.-+.+.+.+++-+++..+++||.+|.||.+-..+++.. +|.-+.-+++||+
T Consensus         8 ~G~~d~~p~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~~~~~~~~~~~~~~~~~~~~   67 (423)
T PRK12420          8 KGTKDYLPEEQVLRNKIKRALEDVFERYGCKPLETPTLNMYELMSSKYGGGDEILKEIYT   67 (423)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHcCCEeccccccchHHHHhcccCCCcccccceEE
Confidence            4566789999999999999999999999999999999999999975 3544445566775

>KOG2324|consensus

Probab=96.09  E-value=0.017  Score=43.56  Aligned_cols=62  Identities=15%  Similarity=0.177  Sum_probs=56.2

Q ss_pred             hccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCCCCcccccc
Q psy10664         13 VAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYK   74 (75)
Q Consensus        13 ~~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~   74 (75)
                      -+-+|+|=|+|-|.+..+.+.+-.......-|=..|.-|.+-..++|++||-|+.--..||+
T Consensus        39 ps~~G~yq~LPlg~R~~~K~~~~l~~~mqs~Ga~kIslp~ls~~~LWekTgRw~~~gsEl~r  100 (457)
T KOG2324|consen   39 PSSPGLYQLLPLGLRVLNKLCRLLDNEMQSGGAQKISLPILSSKELWEKTGRWDAMGSELFR  100 (457)
T ss_pred             cCCCCceeeccchHHHHHHHHHHHHHHHHhccCeeEeecccChHHHHHhcCcccccchhheE
Confidence            36789999999999999999999999999999999999999999999999999876555654

>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A

Probab=95.70  E-value=0.021  Score=40.16  Aligned_cols=47  Identities=13%  Similarity=0.054  Sum_probs=34.6

Q ss_pred             cceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcC
Q psy10664         17 RGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVA   63 (75)
Q Consensus        17 ~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG   63 (75)
                      |+.-|.|+=+...+.+++=+++...++||++|.||.+-..+++...+
T Consensus         1 G~~d~~~~~~~~~~~i~~~l~~~f~~~Gy~~i~~P~le~~~~~~~~~   47 (311)
T PF13393_consen    1 GFRDLLPEEARKRERIESKLREVFERHGYEEIETPLLEYYELFLDKS   47 (311)
T ss_dssp             T---B-HHHHHHHHHHHHHHHHHHHHTT-EE-B--SEEEHHHHHCHS
T ss_pred             CCCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEECCeEeecHHhhhcc
Confidence            45567788888899999999999999999999999999999988655

...

>TIGR02367 PylS pyrrolysyl-tRNA synthetase

Probab=95.50  E-value=0.027  Score=42.98  Aligned_cols=45  Identities=9%  Similarity=0.349  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCCC--Ccccccc
Q psy10664         30 VGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQ--FDEELYK   74 (75)
Q Consensus        30 ~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~~--~~e~~y~   74 (75)
                      ..|.+-+++.+...||++|.||.|.+.+.++..++.+.  ..++||+
T Consensus       243 ~~Led~IRevfvg~GFqEV~TPtLt~eE~~E~m~~~~g~eI~n~Iyk  289 (453)
T TIGR02367       243 GKLERDITKFFVDRGFLEIKSPILIPAEYIERMGIDNDTELSKQIFR  289 (453)
T ss_pred             HHHHHHHHHHHHHCCCEEEECCeecchHHHHhhcCccCCcccccceE
Confidence            45677777778889999999999999999888776533  3445654

PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase.

>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional

Probab=95.44  E-value=0.025  Score=41.54  Aligned_cols=57  Identities=14%  Similarity=0.073  Sum_probs=46.0

Q ss_pred             CcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHc-CCCCCCcccccc
Q psy10664         16 GRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEV-AQLAQFDEELYK   74 (75)
Q Consensus        16 ~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~s-G~~~~~~e~~y~   74 (75)
                      .|+-=+.|+-+...+.+++-+++...++||++|.||.+-..+++... |..  -+++||+
T Consensus         7 ~G~~D~lp~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~e~~~~~~g~~--~~~~~~~   64 (391)
T PRK12292          7 EGIRDLLPEEARKIEEIRRRLLDLFRRWGYEEVITPTLEYLDTLLAGGGAI--LDLRTFK   64 (391)
T ss_pred             CcchhcCHHHHHHHHHHHHHHHHHHHHcCCceeeCcchhhHHHHhccCCcc--chhhhEE
Confidence            34556678899999999999999999999999999999999998653 432  3456765

>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional

Probab=94.42  E-value=0.067  Score=38.00  Aligned_cols=44  Identities=20%  Similarity=0.282  Sum_probs=38.6

Q ss_pred             CcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHH
Q psy10664         16 GRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVM   59 (75)
Q Consensus        16 ~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~   59 (75)
                      .|+-=+.|+=+.+.+.+++-+.+...++||++|.||.+=..++.
T Consensus         9 ~G~rD~lp~e~~~~~~i~~~l~~vf~~~Gy~~I~tP~lE~~e~~   52 (281)
T PRK12293          9 QGSKLYFGKSAKLKREIENVASEILYENGFEEIVTPFFSYHQHQ   52 (281)
T ss_pred             CcccccCcHHHHHHHHHHHHHHHHHHHcCCeEeeccceeehhhh
Confidence            34556678999999999999999999999999999999877776

>KOG2298|consensus

Probab=93.00  E-value=0.099  Score=40.69  Aligned_cols=57  Identities=11%  Similarity=0.240  Sum_probs=51.1

Q ss_pred             CcceeecchHHHHHHHHHHHHHHHH-HhCCCeeeccCccchHHHHHHcCCCCCCcccc
Q psy10664         16 GRGYFLKGPAVCLQVGLVQYALSKW-IEKGYTPLYTPFFMRKEVMQEVAQLAQFDEEL   72 (75)
Q Consensus        16 ~~~~~l~~~ga~L~~aL~~f~~~~~-~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~   72 (75)
                      +|.|=+-|.|--|...+++.+++.- .+.+--+|-.|.+...++++.|||-++|.|-|
T Consensus        36 sGLyD~GP~Gcalk~Nil~~WRkhFilEE~MlEvdct~ltP~~VlkaSGHVdkF~D~m   93 (599)
T KOG2298|consen   36 SGLYDFGPPGCALKSNILSLWRKHFILEEDMLEVDCTMLTPEPVLKASGHVDKFADWM   93 (599)
T ss_pred             ccccccCCCchhhHHhHHHHHHHHHhhhhcceeeccCcCCcHHHhhcccchhhhhHHH
Confidence            5678888999999999999999854 57899999999999999999999999998865

>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain

Probab=92.70  E-value=0.19  Score=36.37  Aligned_cols=33  Identities=12%  Similarity=0.285  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeeccCccchHH
Q psy10664         25 AVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKE   57 (75)
Q Consensus        25 ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~   57 (75)
                      -.+++.++.+.+++++.++||.+|.||.|....
T Consensus         7 ~l~~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~   39 (329)
T cd00775           7 TFIVRSKIISYIRKFLDDRGFLEVETPMLQPIA   39 (329)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCEEEECCccccCC
Confidence            457888999999999999999999999998664

Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.

>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=92.69  E-value=0.29  Score=37.17  Aligned_cols=59  Identities=14%  Similarity=0.210  Sum_probs=47.4

Q ss_pred             CcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHH-cCCCCCC-cccccc
Q psy10664         16 GRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQE-VAQLAQF-DEELYK   74 (75)
Q Consensus        16 ~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~-sG~~~~~-~e~~y~   74 (75)
                      .|+.=|.|+=+.+++.+++.+++..+++||.+|.||.+=..+++.+ +|--.+- +.+||.
T Consensus         8 rG~~D~lp~d~~~~~~i~~~~~~v~~~yGf~eI~TPifE~telf~r~~Ge~td~v~kemY~   68 (429)
T COG0124           8 RGTRDFLPEDMALREYIESTIRKVFESYGFSEIRTPIFEYTELFARKSGEETDVVEKEMYT   68 (429)
T ss_pred             CCccccChHHHHHHHHHHHHHHHHHHHcCCEeccCccccchhHhhhccCCcccccccceEE
Confidence            3455677888899999999999999999999999999999999875 5654432 456764

>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6

Probab=92.47  E-value=0.19  Score=36.08  Aligned_cols=33  Identities=12%  Similarity=0.276  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeeccCccchHH
Q psy10664         25 AVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKE   57 (75)
Q Consensus        25 ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~   57 (75)
                      -.+++.++.+.+++++.++||.+|.||.|....
T Consensus        21 ~~~~rs~i~~~ir~ff~~~~f~Ev~tP~l~~~~   53 (335)
T PF00152_consen   21 ILRIRSAILQAIREFFDKRGFIEVDTPILTSST   53 (335)
T ss_dssp             HHHHHHHHHHHHHHHHHHTT-EEE---SEESSS
T ss_pred             HHHHHHHHHHHHHHHHHhCCceEEcCceeeccc
Confidence            567889999999999999999999999998764

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....

>PRK09350 poxB regulator PoxA; Provisional

Probab=92.34  E-value=0.23  Score=35.69  Aligned_cols=33  Identities=9%  Similarity=0.190  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeeccCccchHH
Q psy10664         25 AVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKE   57 (75)
Q Consensus        25 ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~   57 (75)
                      -.+....+++.+++.+.++||.+|.||.+....
T Consensus         4 ~l~~r~~i~~~ir~~f~~~gf~EV~TP~l~~~~   36 (306)
T PRK09350          4 NLLKRAKIIAEIRRFFADRGVLEVETPILSQAT   36 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCEEEECCeEeccc
Confidence            356788899999999999999999999997644

>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional

Probab=92.08  E-value=0.39  Score=35.57  Aligned_cols=56  Identities=14%  Similarity=0.097  Sum_probs=43.9

Q ss_pred             cceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHH-cCCCCCCcccccc
Q psy10664         17 RGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQE-VAQLAQFDEELYK   74 (75)
Q Consensus        17 ~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~-sG~~~~~~e~~y~   74 (75)
                      |+-=+.|+=+...+.+++-+++...++||++|.||.+=..+++.. +|..  -+++||+
T Consensus        12 G~rD~lp~e~~~~~~i~~~l~~~f~~~Gy~~I~tP~~E~~e~~~~~~g~~--~~~~~y~   68 (392)
T PRK12421         12 GVADVLPEEAQKIERLRRRLLDLFASRGYQLVMPPLIEYLESLLTGAGQD--LKLQTFK   68 (392)
T ss_pred             cccccCHHHHHHHHHHHHHHHHHHHHcCCEEeeCcchhhHHHHhccCCcc--chhceEE
Confidence            444566778889999999999999999999999999999998865 3543  2234654

>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain

Probab=91.77  E-value=0.22  Score=35.39  Aligned_cols=32  Identities=16%  Similarity=0.266  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHHHHHhCCCeeeccCccchHHH
Q psy10664         27 CLQVGLVQYALSKWIEKGYTPLYTPFFMRKEV   58 (75)
Q Consensus        27 ~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~   58 (75)
                      +++.++++.+++++.++||.+|.||.|.....
T Consensus         2 ~~Rs~i~~~iR~f~~~~gfiEV~TP~L~~~~~   33 (280)
T cd00777           2 RLRSRVIKAIRNFLDEQGFVEIETPILTKSTP   33 (280)
T ss_pred             chHHHHHHHHHHHHHHCCCEEEeCCeeecCCC
Confidence            46778899999999999999999999986544

Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.

>PLN02221 asparaginyl-tRNA synthetase

Probab=91.36  E-value=0.25  Score=38.70  Aligned_cols=35  Identities=14%  Similarity=0.188  Sum_probs=31.3

Q ss_pred             hHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHH
Q psy10664         24 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEV   58 (75)
Q Consensus        24 ~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~   58 (75)
                      ...+++.++.+.+++++.++||.+|.||.|+..+.
T Consensus       169 Ai~RiRS~i~~aiR~ff~~~gFiEI~TP~Lt~s~~  203 (572)
T PLN02221        169 AVARIRNALAFATHSFFQEHSFLYIHTPIITTSDC  203 (572)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCEEEeCCeeccccC
Confidence            35678999999999999999999999999988764

>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain

Probab=91.22  E-value=0.27  Score=34.76  Aligned_cols=31  Identities=10%  Similarity=0.223  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHHHHhCCCeeeccCccchHH
Q psy10664         27 CLQVGLVQYALSKWIEKGYTPLYTPFFMRKE   57 (75)
Q Consensus        27 ~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~   57 (75)
                      +++.++.+.+++++.++||++|.||.+....
T Consensus         2 ~~rs~i~~~ir~~f~~~gf~ev~tP~l~~~~   32 (269)
T cd00669           2 KVRSKIIKAIRDFMDDRGFLEVETPMLQKIT   32 (269)
T ss_pred             cHHHHHHHHHHHHHHHCCCEEEECCEEeccC
Confidence            4678899999999999999999999998653

This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.

>PLN02532 asparagine-tRNA synthetase

Probab=91.09  E-value=0.27  Score=39.04  Aligned_cols=35  Identities=9%  Similarity=0.241  Sum_probs=30.8

Q ss_pred             hHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHH
Q psy10664         24 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEV   58 (75)
Q Consensus        24 ~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~   58 (75)
                      ...+++.++.+.+++++.++||++|.||.|+..+.
T Consensus       233 ailRiRS~i~~aiR~ff~~~GFiEV~TPiLT~s~~  267 (633)
T PLN02532        233 SVTRVRSALTHATHTFFQDHGFLYVQVPIITTTDA  267 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCEEeeCCeecccCC
Confidence            35678899999999999999999999999987753

>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX

Probab=90.70  E-value=0.39  Score=34.47  Aligned_cols=31  Identities=16%  Similarity=0.198  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHHHHhCCCeeeccCccchHH
Q psy10664         27 CLQVGLVQYALSKWIEKGYTPLYTPFFMRKE   57 (75)
Q Consensus        27 ~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~   57 (75)
                      +++..+++.+++.+.++||.+|.||.+....
T Consensus         2 ~~rs~i~~~ir~~f~~~gF~EV~TP~l~~~~   32 (304)
T TIGR00462         2 RARARLLAAIRAFFAERGVLEVETPLLSPAP   32 (304)
T ss_pred             hHHHHHHHHHHHHHHHCCCEEEECCeEecCC
Confidence            4678889999999999999999999999764

Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown.

>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]

Probab=90.58  E-value=0.38  Score=36.68  Aligned_cols=35  Identities=14%  Similarity=0.295  Sum_probs=31.1

Q ss_pred             hHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHH
Q psy10664         24 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEV   58 (75)
Q Consensus        24 ~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~   58 (75)
                      ...+++.++...+++++.++||++|.||.|+-.+.
T Consensus       132 Av~kirs~i~~a~~eff~~~gF~eV~tP~i~~~~~  166 (435)
T COG0017         132 AVFKIRSSILRAIREFFYENGFTEVHTPIITASAT  166 (435)
T ss_pred             HHHhHHHHHHHHHHHHHHhCCcEEecCceEeccCC
Confidence            35678999999999999999999999999987654

>PRK06462 asparagine synthetase A; Reviewed

Probab=90.34  E-value=0.43  Score=34.70  Aligned_cols=33  Identities=12%  Similarity=0.300  Sum_probs=29.5

Q ss_pred             hHHHHHHHHHHHHHHHHHhCCCeeeccCccchH
Q psy10664         24 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRK   56 (75)
Q Consensus        24 ~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~   56 (75)
                      .-.+++.++.+.+++++.++||.+|.||.|...
T Consensus        28 ~il~~Rs~i~~~iR~ff~~~~f~EV~TP~l~~~   60 (335)
T PRK06462         28 KVLKVQSSILRYTREFLDGRGFVEVLPPIISPS   60 (335)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCEEEeCCeEecC
Confidence            356788999999999999999999999999865

>PRK02983 lysS lysyl-tRNA synthetase; Provisional

Probab=90.03  E-value=0.32  Score=40.67  Aligned_cols=33  Identities=12%  Similarity=0.266  Sum_probs=29.2

Q ss_pred             hHHHHHHHHHHHHHHHHHhCCCeeeccCccchH
Q psy10664         24 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRK   56 (75)
Q Consensus        24 ~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~   56 (75)
                      .-.+++.++++.+++++.++||.+|-||.|...
T Consensus       768 ~~~r~Rs~i~~~iR~fl~~~gFlEVeTPiL~~~  800 (1094)
T PRK02983        768 DLLRARSAVVRAVRETLVARGFLEVETPILQQV  800 (1094)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCEEEeCCEeecc
Confidence            456788999999999999999999999999743

>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional

Probab=89.90  E-value=0.51  Score=34.89  Aligned_cols=42  Identities=10%  Similarity=0.190  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHhCCCeeeccCccchHHHHHH-cCCCCCCcccccc
Q psy10664         31 GLVQYALSKWIEKGYTPLYTPFFMRKEVMQE-VAQLAQFDEELYK   74 (75)
Q Consensus        31 aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~-sG~~~~~~e~~y~   74 (75)
                      ++.+-+++...++||++|.||.+-..+++.. +|.-  -+++||+
T Consensus         9 ~i~~~i~~~f~~~Gy~~I~tP~lE~~e~~~~~~g~~--~~~~~~~   51 (373)
T PRK12295          9 AAAEALLASFEAAGAVRVDPPILQPAEPFLDLSGED--IRRRIFV   51 (373)
T ss_pred             HHHHHHHHHHHHcCCEEeeCCccccHHHhhhccCch--hhcceEE
Confidence            5666667777899999999999999998753 4533  2345665

>PTZ00401 aspartyl-tRNA synthetase; Provisional

Probab=89.89  E-value=0.5  Score=36.87  Aligned_cols=34  Identities=18%  Similarity=0.260  Sum_probs=30.3

Q ss_pred             hHHHHHHHHHHHHHHHHHhCCCeeeccCccchHH
Q psy10664         24 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKE   57 (75)
Q Consensus        24 ~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~   57 (75)
                      .-.+++.++.+.+++++.++||.+|-||.|+...
T Consensus       211 ~i~r~rs~i~~~~R~fl~~~gFiEV~TP~L~~~~  244 (550)
T PTZ00401        211 AIFRLQSRVCQYFRQFLIDSDFCEIHSPKIINAP  244 (550)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCEEEeCCccccCC
Confidence            4567888999999999999999999999998755

>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type

Probab=89.55  E-value=0.53  Score=35.36  Aligned_cols=33  Identities=15%  Similarity=0.293  Sum_probs=29.3

Q ss_pred             hHHHHHHHHHHHHHHHHHhCCCeeeccCccchH
Q psy10664         24 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRK   56 (75)
Q Consensus        24 ~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~   56 (75)
                      .-.+++.++++.+++++.++||.+|-||.|...
T Consensus       131 ~~~r~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~  163 (428)
T TIGR00458       131 AIFRIRSGVLESVREFLAEEGFIEVHTPKLVAS  163 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCEEEeCCceecC
Confidence            456788999999999999999999999999843

In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn).

>PLN02972 Histidyl-tRNA synthetase

Probab=89.54  E-value=0.64  Score=37.73  Aligned_cols=45  Identities=18%  Similarity=0.171  Sum_probs=37.8

Q ss_pred             cceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHH
Q psy10664         17 RGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQE   61 (75)
Q Consensus        17 ~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~   61 (75)
                      |+.=|.|+=+.+.+.+++-+.+..+.+||++|.||.+-..+++.+
T Consensus       332 GtrD~lP~e~~~re~I~~~L~~vFk~hGy~eI~TPvfE~~Ell~~  376 (763)
T PLN02972        332 GTRDFAKEQMAIREKAFSIITSVFKRHGATALDTPVFELRETLMG  376 (763)
T ss_pred             CCccCCHHHHHHHHHHHHHHHHHHHHcCCEEccCCcccchHHhhc
Confidence            344455666788999999999999999999999999999998865

>PLN02603 asparaginyl-tRNA synthetase

Probab=89.12  E-value=0.54  Score=36.83  Aligned_cols=34  Identities=12%  Similarity=0.208  Sum_probs=30.3

Q ss_pred             hHHHHHHHHHHHHHHHHHhCCCeeeccCccchHH
Q psy10664         24 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKE   57 (75)
Q Consensus        24 ~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~   57 (75)
                      .-.+++.++.+-+++++.++||.+|.||.|...+
T Consensus       224 ai~RiRS~i~~air~ff~~~gF~eV~TPiLt~s~  257 (565)
T PLN02603        224 AVARVRNALAYATHKFFQENGFVWVSSPIITASD  257 (565)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCEEEECCeecccC
Confidence            4568899999999999999999999999998764

>PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional

Probab=89.11  E-value=0.63  Score=33.13  Aligned_cols=35  Identities=9%  Similarity=-0.102  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcC
Q psy10664         29 QVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVA   63 (75)
Q Consensus        29 ~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG   63 (75)
                      .+.+++-+++...++||++|.||.+=..+++..++
T Consensus        10 ~~~ie~~l~~~f~~~GY~~I~tP~~E~~d~~~~~~   44 (272)
T PRK12294         10 LKESETAFLKYFNKADYELVDFSVIEKLDWKQLNH   44 (272)
T ss_pred             HHHHHHHHHHHHHHcCCeEeeCCcchhHHhhhccc
Confidence            45677778888899999999999998888875444

>TIGR00457 asnS asparaginyl-tRNA synthetase

Probab=88.99  E-value=0.53  Score=35.65  Aligned_cols=34  Identities=18%  Similarity=0.281  Sum_probs=30.4

Q ss_pred             hHHHHHHHHHHHHHHHHHhCCCeeeccCccchHH
Q psy10664         24 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKE   57 (75)
Q Consensus        24 ~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~   57 (75)
                      .-.+++.++++.+++++.++||.+|.||.|....
T Consensus       134 ~~lr~Rs~i~~~~r~~~~~~gf~eV~TP~l~~~~  167 (453)
T TIGR00457       134 AVMRVRNALSQAIHRYFQENGFTWVSPPILTSND  167 (453)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCEEecCCeEeecC
Confidence            3468899999999999999999999999998755

In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.

>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain

Probab=88.90  E-value=0.7  Score=33.34  Aligned_cols=35  Identities=14%  Similarity=0.179  Sum_probs=30.2

Q ss_pred             chHHHHHHHHHHHHHHHHHhCCCeeeccCccchHH
Q psy10664         23 GPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKE   57 (75)
Q Consensus        23 ~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~   57 (75)
                      ..-.+++.++.+-+++...++||.+|.||.|....
T Consensus        21 ~~~~~~rs~i~~~ir~~f~~~gf~eV~TP~l~~~~   55 (322)
T cd00776          21 QAIFRIRSEVLRAFREFLRENGFTEVHTPKITSTD   55 (322)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCEEeeCCceecCC
Confidence            34567889999999999999999999999998743

Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.

>PRK05159 aspC aspartyl-tRNA synthetase; Provisional

Probab=88.81  E-value=0.65  Score=34.89  Aligned_cols=32  Identities=16%  Similarity=0.293  Sum_probs=28.5

Q ss_pred             hHHHHHHHHHHHHHHHHHhCCCeeeccCccch
Q psy10664         24 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMR   55 (75)
Q Consensus        24 ~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~   55 (75)
                      .-.+++.++++.+++++.++||.+|-||.|..
T Consensus       134 ~~l~~Rs~i~~~iR~ff~~~gf~EV~TP~L~~  165 (437)
T PRK05159        134 AIFKIRSEVLRAFREFLYENGFTEIFTPKIVA  165 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCEEEeCCcccc
Confidence            45678889999999999999999999999964

>PLN02850 aspartate-tRNA ligase

Probab=88.69  E-value=0.64  Score=36.04  Aligned_cols=33  Identities=15%  Similarity=0.231  Sum_probs=29.2

Q ss_pred             hHHHHHHHHHHHHHHHHHhCCCeeeccCccchH
Q psy10664         24 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRK   56 (75)
Q Consensus        24 ~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~   56 (75)
                      ...+++.++.+.+++++.++||.+|-||.|...
T Consensus       223 aifrirs~i~~~~R~fl~~~gF~EV~TP~L~~~  255 (530)
T PLN02850        223 AIFRIQSQVCNLFREFLLSKGFVEIHTPKLIAG  255 (530)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCcEEEeCCccccC
Confidence            456788899999999999999999999999654

>PRK00476 aspS aspartyl-tRNA synthetase; Validated

Probab=88.52  E-value=0.6  Score=36.61  Aligned_cols=33  Identities=12%  Similarity=0.206  Sum_probs=29.2

Q ss_pred             hHHHHHHHHHHHHHHHHHhCCCeeeccCccchH
Q psy10664         24 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRK   56 (75)
Q Consensus        24 ~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~   56 (75)
                      .-.+++..+.+.+++++.++||.+|-||.|.+.
T Consensus       139 ~~l~~Rs~i~~~iR~ff~~~gFiEV~TP~L~~s  171 (588)
T PRK00476        139 KNLKLRSKVTSAIRNFLDDNGFLEIETPILTKS  171 (588)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCEEEECCeeecC
Confidence            345678899999999999999999999999865

>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type

Probab=88.51  E-value=0.61  Score=36.67  Aligned_cols=33  Identities=12%  Similarity=0.222  Sum_probs=29.3

Q ss_pred             hHHHHHHHHHHHHHHHHHhCCCeeeccCccchH
Q psy10664         24 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRK   56 (75)
Q Consensus        24 ~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~   56 (75)
                      .-.+++..+.+.+++++.++||.+|-||.|.+.
T Consensus       136 ~~lr~Rs~i~~~iR~ff~~~gFiEVeTP~L~~s  168 (583)
T TIGR00459       136 QRLKLRHKVTKAVRNFLDQQGFLEIETPMLTKS  168 (583)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCEEEECCeeccC
Confidence            345788999999999999999999999999863

In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences.

>PF13590 DUF4136: Domain of unknown function (DUF4136)

Probab=88.47  E-value=1.2  Score=27.73  Aligned_cols=49  Identities=12%  Similarity=0.083  Sum_probs=35.3

Q ss_pred             cccccchhccCcceeecch-------HHHHHHHHHHHHHHHHHhCCCeee-ccCccc
Q psy10664          6 DSEAGAIVAGGRGYFLKGP-------AVCLQVGLVQYALSKWIEKGYTPL-YTPFFM   54 (75)
Q Consensus         6 d~~~~~k~~G~~~~~l~~~-------ga~L~~aL~~f~~~~~~~~Gy~~v-~~P~i~   54 (75)
                      |.++.+..++-+.|.|.+.       .-.....+.+-+.+.|.++||+++ ..|+++
T Consensus         7 dyd~~~df~~ykTy~~~~~~~~~~~~~~~~~~~i~~~v~~~L~~~G~~~~~~~aDl~   63 (151)
T PF13590_consen    7 DYDPSADFSQYKTYAFVPSSSDPAQSNPLDDQRIQDAVEQELAAKGYRRVPENADLL   63 (151)
T ss_pred             cCCCCcCCCCCCeEEEecCCcCccccCcHHHHHHHHHHHHHHHHCCCeecccCCCEE
Confidence            4555556666667777666       234556778888889999999999 777765

>KOG0555|consensus

Probab=88.30  E-value=0.26  Score=37.81  Aligned_cols=39  Identities=18%  Similarity=0.349  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCC
Q psy10664         27 CLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQL   65 (75)
Q Consensus        27 ~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~   65 (75)
                      +.+-++.+-++|....+|||+|.||.||..++=-+|..+
T Consensus       244 K~Ra~~lr~~Rd~y~~~~ytEVtPPtmVQTQVEGGsTLF  282 (545)
T KOG0555|consen  244 KARAALLRAMRDHYFERGYTEVTPPTMVQTQVEGGSTLF  282 (545)
T ss_pred             HHHHHHHHHHHHHHHhcCceecCCCceEEEEecCcceEE
Confidence            456678888999999999999999999999887666644

>PTZ00417 lysine-tRNA ligase; Provisional

Probab=88.25  E-value=0.66  Score=36.48  Aligned_cols=33  Identities=12%  Similarity=0.231  Sum_probs=29.3

Q ss_pred             hHHHHHHHHHHHHHHHHHhCCCeeeccCccchH
Q psy10664         24 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRK   56 (75)
Q Consensus        24 ~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~   56 (75)
                      .-.+++..+++.+++++.++||.+|-||.|...
T Consensus       251 ~ifr~RS~Ii~aiR~Ff~~rGFlEVeTPiL~~~  283 (585)
T PTZ00417        251 STFITRTKIINYLRNFLNDRGFIEVETPTMNLV  283 (585)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeEEEeCCeeecc
Confidence            355688899999999999999999999999764

>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial

Probab=88.13  E-value=0.72  Score=35.40  Aligned_cols=33  Identities=9%  Similarity=0.185  Sum_probs=29.1

Q ss_pred             hHHHHHHHHHHHHHHHHHhCCCeeeccCccchH
Q psy10664         24 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRK   56 (75)
Q Consensus        24 ~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~   56 (75)
                      .-.+++..+++.+++++.++||.+|-||.|...
T Consensus       170 ~~~r~Rs~i~~~iR~fl~~~gF~EVeTP~L~~~  202 (496)
T TIGR00499       170 QTFLVRSKIIKAIRRFLDDRGFIEVETPMLQVI  202 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHCcCEEEeCCeeecC
Confidence            456788899999999999999999999999754

This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms.

>PRK03932 asnC asparaginyl-tRNA synthetase; Validated

Probab=87.94  E-value=0.79  Score=34.64  Aligned_cols=33  Identities=18%  Similarity=0.219  Sum_probs=29.9

Q ss_pred             hHHHHHHHHHHHHHHHHHhCCCeeeccCccchH
Q psy10664         24 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRK   56 (75)
Q Consensus        24 ~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~   56 (75)
                      .-.+++..+.+.+++++.++||.+|-||.|...
T Consensus       131 ~~l~~Rs~i~~~iR~f~~~~gf~EV~TP~L~~~  163 (450)
T PRK03932        131 AVMRIRNTLAQAIHEFFNENGFVWVDTPIITAS  163 (450)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCEEecCCceecc
Confidence            457888999999999999999999999999865

>PTZ00425 asparagine-tRNA ligase; Provisional

Probab=87.37  E-value=0.74  Score=36.29  Aligned_cols=35  Identities=11%  Similarity=0.239  Sum_probs=30.6

Q ss_pred             hHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHH
Q psy10664         24 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEV   58 (75)
Q Consensus        24 ~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~   58 (75)
                      .-.+++.++..-+++++.++||.+|.||.|..++.
T Consensus       213 avlRiRs~l~~a~r~ff~~~gF~eI~TPiit~s~~  247 (586)
T PTZ00425        213 SVIRIRNALAIATHLFFQSRGFLYIHTPLITTSDC  247 (586)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCEEeeCCeecccCC
Confidence            35678899999999999999999999999987663

>PRK12445 lysyl-tRNA synthetase; Reviewed

Probab=87.29  E-value=0.87  Score=35.09  Aligned_cols=32  Identities=9%  Similarity=0.237  Sum_probs=28.8

Q ss_pred             hHHHHHHHHHHHHHHHHHhCCCeeeccCccch
Q psy10664         24 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMR   55 (75)
Q Consensus        24 ~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~   55 (75)
                      .-.+++..+++.+++++.++||.+|-||.|..
T Consensus       182 ~~~r~Rs~i~~~iR~f~~~~gFiEVeTPiL~~  213 (505)
T PRK12445        182 QTFVVRSKILAAIRQFMVARGFMEVETPMMQV  213 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCEEeeCCeeEe
Confidence            45678899999999999999999999999964

>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional

Probab=87.00  E-value=0.85  Score=36.69  Aligned_cols=34  Identities=12%  Similarity=0.248  Sum_probs=29.7

Q ss_pred             hHHHHHHHHHHHHHHHHHhCCCeeeccCccchHH
Q psy10664         24 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKE   57 (75)
Q Consensus        24 ~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~   57 (75)
                      .-.+++..+++.+++++.++||.+|-||.|.+..
T Consensus       154 ~~lr~Rs~i~~~iR~fl~~~gFiEVeTPiL~~s~  187 (706)
T PRK12820        154 DHLAKRHRIIKCARDFLDSRGFLEIETPILTKST  187 (706)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCEEEeCCccccCC
Confidence            4567788999999999999999999999998643

>PRK00484 lysS lysyl-tRNA synthetase; Reviewed

Probab=86.29  E-value=1.1  Score=34.38  Aligned_cols=33  Identities=9%  Similarity=0.108  Sum_probs=29.2

Q ss_pred             hHHHHHHHHHHHHHHHHHhCCCeeeccCccchH
Q psy10664         24 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRK   56 (75)
Q Consensus        24 ~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~   56 (75)
                      .-.+++..+++.+++++.++||.+|-||.|...
T Consensus       170 ~~~r~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~  202 (491)
T PRK00484        170 ETFRKRSKIISAIRRFLDNRGFLEVETPMLQPI  202 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCEEEECCceecc
Confidence            566788999999999999999999999999743

>PLN02502 lysyl-tRNA synthetase

Probab=86.07  E-value=1.1  Score=34.99  Aligned_cols=33  Identities=12%  Similarity=0.210  Sum_probs=29.1

Q ss_pred             hHHHHHHHHHHHHHHHHHhCCCeeeccCccchH
Q psy10664         24 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRK   56 (75)
Q Consensus        24 ~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~   56 (75)
                      .-.+++..+++.+++++.++||.+|-||.|...
T Consensus       227 ~i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~  259 (553)
T PLN02502        227 DIFRTRAKIISYIRRFLDDRGFLEVETPMLNMI  259 (553)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCEEEECCeeecc
Confidence            456788899999999999999999999999753

>PTZ00385 lysyl-tRNA synthetase; Provisional

Probab=84.96  E-value=1.3  Score=35.44  Aligned_cols=32  Identities=13%  Similarity=0.174  Sum_probs=28.5

Q ss_pred             hHHHHHHHHHHHHHHHHHhCCCeeeccCccch
Q psy10664         24 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMR   55 (75)
Q Consensus        24 ~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~   55 (75)
                      .-.+++.++++.+++++.++||.+|-||.|..
T Consensus       231 ~ifr~Rs~I~~aiR~ff~~~gFlEVeTPiL~~  262 (659)
T PTZ00385        231 ETIKKRHVMLQALRDYFNERNFVEVETPVLHT  262 (659)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCEEeeCCEeec
Confidence            35678889999999999999999999999954

>PRK07080 hypothetical protein; Validated

Probab=84.40  E-value=1.9  Score=31.79  Aligned_cols=49  Identities=14%  Similarity=0.070  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCCCCccccccC
Q psy10664         27 CLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKM   75 (75)
Q Consensus        27 ~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~i   75 (75)
                      .+-.+|...+...-...|++++.-|-++..+.+++||++..|=+.++.|
T Consensus        48 ~v~~~ld~~i~~lg~~~~~e~~~FPpl~~~~~~ek~~Y~ksFP~l~~~V   96 (317)
T PRK07080         48 DVVEALDALITRLGADQGAEVLRFPPVMSRAEFERSGYLKSFPQLAGTV   96 (317)
T ss_pred             HHHHHHHHHHHHhccccCCceeeCCCCCCHHHHHhcChhhhCcccceee
Confidence            3444444444433335569999999999999999999999887766643

>PLN02903 aminoacyl-tRNA ligase

Probab=83.81  E-value=1.3  Score=35.31  Aligned_cols=34  Identities=18%  Similarity=0.306  Sum_probs=29.2

Q ss_pred             hHHHHHHHHHHHHHHHHHh-CCCeeeccCccchHH
Q psy10664         24 PAVCLQVGLVQYALSKWIE-KGYTPLYTPFFMRKE   57 (75)
Q Consensus        24 ~ga~L~~aL~~f~~~~~~~-~Gy~~v~~P~i~~~~   57 (75)
                      .-.+++..+.+.+++++.+ +||.+|-||.|.+..
T Consensus       201 ~~lr~Rs~i~~~iR~fl~~~~gFiEVeTPiL~~st  235 (652)
T PLN02903        201 ANLRLRHRVVKLIRRYLEDVHGFVEIETPILSRST  235 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCeEEEECCeeccCC
Confidence            4567888999999999996 999999999998654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	75
3vbb_A	522	Crystal Structure Of Seryl-Trna Synthetase From Hum		5e-26
3lsq_A	484	Trypanosoma Brucei Seryl-Trna Synthetase Length = 4		2e-17
3qne_A	485	Candida Albicans Seryl-Trna Synthetase Length = 485		2e-16
3qo5_A	485	Crystal Structure Of The Seryl-Trna Synthetase From		1e-15
2dq0_A	455	Crystal Structure Of Seryl-Trna Synthetase From Pyr		9e-09
1wle_A	501	Crystal Structure Of Mammalian Mitochondrial Seryl-		4e-06
2dq3_A	425	Crystal Structure Of Aq_298 Length = 425		4e-05

>pdb|3VBB|A Chain A, Crystal Structure Of Seryl-Trna Synthetase From Human At 2.9 Angstroms Length = 522

Iteration: 1
 Score =  112 bits (280), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 51/75 (68%), Positives = 60/75 (80%)
Query: 1   MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQ 60
           M+DG + E GA+VAG RGYFLKG  V L+  L+QYAL     +GY P+YTPFFMRKEVMQ
Sbjct: 176 MVDGFEGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQ 235
Query: 61  EVAQLAQFDEELYKM 75
           EVAQL+QFDEELYK+
Sbjct: 236 EVAQLSQFDEELYKV 250

>pdb|3LSQ|A Chain A, Trypanosoma Brucei Seryl-Trna Synthetase Length = 484

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 40/69 (57%), Positives = 52/69 (75%)
Query: 7   SEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLA 66
           S+A   +AGGR Y LKG  V LQV LV Y+L   +++GYTP Y PFF+ ++VM EVAQL+
Sbjct: 189 SKAVTSMAGGRSYVLKGGLVQLQVALVSYSLDFLVKRGYTPFYPPFFLNRDVMGEVAQLS 248
Query: 67  QFDEELYKM 75
           QFDEELY++
Sbjct: 249 QFDEELYQV 257

>pdb|3QNE|A Chain A, Candida Albicans Seryl-Trna Synthetase Length = 485

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/74 (52%), Positives = 46/74 (62%)
Query: 2   IDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQE 61
           +DG D E G  + G RGYFL+   V L   L+ Y LS    KGY PL  P  M KEVM +
Sbjct: 161 LDGYDPERGVRIVGHRGYFLRNYGVFLNQALINYGLSFLSSKGYVPLQAPVMMNKEVMAK 220
Query: 62  VAQLAQFDEELYKM 75
            AQL+QFDEELYK+
Sbjct: 221 TAQLSQFDEELYKV 234

>pdb|3QO5|A Chain A, Crystal Structure Of The Seryl-Trna Synthetase From Candida Albicans Length = 485

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/74 (51%), Positives = 45/74 (60%)
Query: 2   IDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQE 61
           +DG D E G  + G RGYFL+   V L   L+ Y L     KGY PL  P  M KEVM +
Sbjct: 161 LDGYDPERGVRIVGHRGYFLRNYGVFLNQALINYGLLFLSSKGYVPLQAPVMMNKEVMAK 220
Query: 62  VAQLAQFDEELYKM 75
            AQL+QFDEELYK+
Sbjct: 221 TAQLSQFDEELYKV 234

>pdb|2DQ0|A Chain A, Crystal Structure Of Seryl-Trna Synthetase From Pyrococcus Horikoshii Complexed With A Seryl-Adenylate Analog Length = 455

Iteration: 1
 Score = 55.1 bits (131), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 44/75 (58%)
Query: 1   MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQ 60
           ++ G D    A V+G R Y+L    V L + L+++AL + IEKG+TP+  P+ +R+ V +
Sbjct: 168 ILGGADFARAAKVSGSRFYYLLNEIVILDLALIRFALDRLIEKGFTPVIPPYMVRRFVEE 227
Query: 61  EVAQLAQFDEELYKM 75
                  F++ +YK+
Sbjct: 228 GSTSFEDFEDVIYKV 242

>pdb|1WLE|A Chain A, Crystal Structure Of Mammalian Mitochondrial Seryl-Trna Synthetase Complexed With Seryl-Adenylate Length = 501

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 30/48 (62%)
Query: 13  VAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQ 60
           V+G R Y+L+G    LQ GLV + L+K I +G+TP+  P  +R  V +
Sbjct: 206 VSGHRSYYLRGAGALLQHGLVNFTLNKLIHRGFTPMTVPDLLRGVVFE 253

>pdb|2DQ3|A Chain A, Crystal Structure Of Aq_298 Length = 425

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 38/70 (54%)
Query: 5   VDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQ 64
           +D + GA ++G R   + G    L+  L+ + L    +KGY  +  P  ++ E++    Q
Sbjct: 151 LDFKRGAKLSGSRFTVIAGWGARLERALINFXLDLHTKKGYKEICPPHLVKPEILIGTGQ 210
Query: 65  LAQFDEELYK 74
           L +F+E+LYK
Sbjct: 211 LPKFEEDLYK 220

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	75
3qne_A	485	Seryl-tRNA synthetase, cytoplasmic; amino acid bio	6e-31
3vbb_A	522	Seryl-tRNA synthetase, cytoplasmic; coiled-coil, l	1e-30
3lss_A	484	Seryl-tRNA synthetase; aminoacyl-tRNA synthetase,	5e-28
2dq0_A	455	Seryl-tRNA synthetase; coiled-coil, homodimer, str	2e-20
1wle_A	501	Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bo	1e-16
1ses_A	421	Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A	1e-15
3err_A	536	Fusion protein of microtubule binding domain from	2e-15
2dq3_A	425	Seryl-tRNA synthetase; coiled-coil, homodimer, str	2e-11
3mf2_A	346	BLL0957 protein; aminoacyl-tRNA synthetase, seryl-	3e-08
2cja_A	522	Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE	1e-07

>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A Length = 485

 Score =  111 bits (279), Expect = 6e-31
 Identities = 39/74 (52%), Positives = 45/74 (60%)

Query: 1   MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQ 60
            +DG D E G  + G RGYFL+   V L   L+ Y LS    KGY PL  P  M KEVM 
Sbjct: 160 RLDGYDPERGVRIVGHRGYFLRNYGVFLNQALINYGLSFLSSKGYVPLQAPVMMNKEVMA 219

Query: 61  EVAQLAQFDEELYK 74
           + AQL+QFDEELYK
Sbjct: 220 KTAQLSQFDEELYK 233

>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens} Length = 522

 Score =  110 bits (277), Expect = 1e-30
 Identities = 51/75 (68%), Positives = 60/75 (80%)

Query: 1   MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQ 60
           M+DG + E GA+VAG RGYFLKG  V L+  L+QYAL     +GY P+YTPFFMRKEVMQ
Sbjct: 176 MVDGFEGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQ 235

Query: 61  EVAQLAQFDEELYKM 75
           EVAQL+QFDEELYK+
Sbjct: 236 EVAQLSQFDEELYKV 250

>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A* Length = 484

 Score =  103 bits (258), Expect = 5e-28
 Identities = 40/75 (53%), Positives = 53/75 (70%), Gaps = 1/75 (1%)

Query: 1   MIDGVDSE-AGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVM 59
            +  +D+  A   +AGGR Y LKG  V LQV LV Y+L   +++GYTP Y PFF+ ++VM
Sbjct: 182 RLGMMDTSKAVTSMAGGRSYVLKGGLVQLQVALVSYSLDFLVKRGYTPFYPPFFLNRDVM 241

Query: 60  QEVAQLAQFDEELYK 74
            EVAQL+QFDEELY+
Sbjct: 242 GEVAQLSQFDEELYQ 256

>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A Length = 455

 Score = 81.9 bits (203), Expect = 2e-20
 Identities = 25/73 (34%), Positives = 42/73 (57%)

Query: 3   DGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEV 62
            G D    A V+G R Y+L    V L + L+++AL + IEKG+TP+  P+ +R+ V +  
Sbjct: 170 GGADFARAAKVSGSRFYYLLNEIVILDLALIRFALDRLIEKGFTPVIPPYMVRRFVEEGS 229

Query: 63  AQLAQFDEELYKM 75
                F++ +YK+
Sbjct: 230 TSFEDFEDVIYKV 242

>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus} Length = 501

 Score = 71.5 bits (176), Expect = 1e-16
 Identities = 21/72 (29%), Positives = 34/72 (47%)

Query: 3   DGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEV 62
           D +  +  + V+G R Y+L+G    LQ GLV + L+K I +G+TP+  P  +R  V +  
Sbjct: 196 DIIRQKRLSHVSGHRSYYLRGAGALLQHGLVNFTLNKLIHRGFTPMTVPDLLRGVVFEGC 255

Query: 63  AQLAQFDEELYK 74
                       
Sbjct: 256 GMTPNAKPSQIY 267

>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A Length = 421

 Score = 68.3 bits (168), Expect = 1e-15
 Identities = 14/72 (19%), Positives = 34/72 (47%)

Query: 4   GVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVA 63
           G      + V+G R Y LKG     ++ L+++A+     +G+ P+  P + R++      
Sbjct: 144 GWWEPRISQVSGSRSYALKGDLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTG 203

Query: 64  QLAQFDEELYKM 75
               + ++++ +
Sbjct: 204 HFPAYRDQVWAI 215

>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} Length = 536

 Score = 68.2 bits (167), Expect = 2e-15
 Identities = 14/72 (19%), Positives = 34/72 (47%)

Query: 4   GVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVA 63
           G      + V+G R Y LKG     ++ L+++A+     +G+ P+  P + R++      
Sbjct: 253 GWWEPRISQVSGSRSYALKGDLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTG 312

Query: 64  QLAQFDEELYKM 75
               + ++++ +
Sbjct: 313 HFPAYRDQVWAI 324

>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus} Length = 425

 Score = 56.4 bits (137), Expect = 2e-11
 Identities = 21/73 (28%), Positives = 38/73 (52%)

Query: 3   DGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEV 62
             +D + GA ++G R   + G    L+  L+ + L    +KGY  +  P  ++ E++   
Sbjct: 149 GILDFKRGAKLSGSRFTVIAGWGARLERALINFMLDLHTKKGYKEICPPHLVKPEILIGT 208

Query: 63  AQLAQFDEELYKM 75
            QL +F+E+LYK 
Sbjct: 209 GQLPKFEEDLYKC 221

>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A* Length = 346

 Score = 47.3 bits (112), Expect = 3e-08
 Identities = 11/66 (16%), Positives = 21/66 (31%)

Query: 8   EAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQ 67
           +      G  G + +       V  +   ++   E G   L  P  M +  +++   L  
Sbjct: 45  DKLFHSMGSDGVYARTALYESIVERLAALITSHREAGTEALRFPPVMSRAQLEKSGYLKS 104

Query: 68  FDEELY 73
           F   L 
Sbjct: 105 FPNLLG 110

>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A Length = 522

 Score = 45.9 bits (108), Expect = 1e-07
 Identities = 12/74 (16%), Positives = 23/74 (31%), Gaps = 2/74 (2%)

Query: 2   IDGVDSEAGAIVAGGRG-YFLKGPAVCLQVGLVQYALSKWIEK-GYTPLYTPFFMRKEVM 59
              +  E        RG +     +  +     +  L + +E  GY  +  P  +  EV 
Sbjct: 206 TQAMMKEGWLKRGSSRGQWIHGPQSARIFRTFEKIVLEELLEPLGYREMIFPKLVTWEVW 265

Query: 60  QEVAQLAQFDEELY 73
            +         E+Y
Sbjct: 266 MKSGHAKGVYPEIY 279

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	75
3vbb_A	522	Seryl-tRNA synthetase, cytoplasmic; coiled-coil, l	99.92
3lss_A	484	Seryl-tRNA synthetase; aminoacyl-tRNA synthetase,	99.92
3err_A	536	Fusion protein of microtubule binding domain from	99.91
3qne_A	485	Seryl-tRNA synthetase, cytoplasmic; amino acid bio	99.91
1wle_A	501	Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bo	99.9
2dq0_A	455	Seryl-tRNA synthetase; coiled-coil, homodimer, str	99.86
1ses_A	421	Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A	99.85
2dq3_A	425	Seryl-tRNA synthetase; coiled-coil, homodimer, str	99.85
3uh0_A	460	Threonyl-tRNA synthetase, mitochondrial; threonine	99.69
3mf2_A	346	BLL0957 protein; aminoacyl-tRNA synthetase, seryl-	99.63
1qf6_A	642	THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m	99.59
4hvc_A	519	Bifunctional glutamate/proline--tRNA ligase; ligas	99.57
1nyr_A	645	Threonyl-tRNA synthetase 1; ATP, threonine, ligase	99.53
1evl_A	401	Threonyl-tRNA synthetase; amino acid recognition,	99.52
2cja_A	522	Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE	99.52
3ial_A	518	Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase,	99.48
1nj1_A	501	PROR, proline-tRNA synthetase, proline--tRNA ligas	99.44
2j3l_A	572	Prolyl-tRNA synthetase; class II aminoacyl- T synt	99.38
1ati_A	505	Glycyl-tRNA synthetase; protein biosynthesis, liga	99.33
3a32_A	471	Probable threonyl-tRNA synthetase 1; aeropyrum per	99.29
1nj8_A	459	Proline-tRNA synthetase, proline--tRNA ligase; cla	99.28
1hc7_A	477	Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase,	99.23
2i4l_A	458	Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseud	99.21
1qe0_A	420	Histidyl-tRNA synthetase; class II tRNA synthetase	99.1
4e51_A	467	Histidine--tRNA ligase; seattle structural genomic	99.01
2zt5_A	693	Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP	98.97
1h4v_B	421	Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA	98.79
1htt_A	423	Histidyl-tRNA synthetase; complex (tRNA synthetase	98.73
1z7m_A	344	ATP phosphoribosyltransferase regulatory subunit;	98.69
1wu7_A	434	Histidyl-tRNA synthetase; ligase, structural genom	98.66
3rac_A	373	Histidine-tRNA ligase; structural genomics, PSI-bi	98.51
3od1_A	400	ATP phosphoribosyltransferase regulatory subunit;	98.4
3ikl_A	459	DNA polymerase subunit gamma-2, mitochondrial; tra	98.19
3lc0_A	456	Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-t	98.15
3net_A	465	Histidyl-tRNA synthetase; aminoacyl-tRNA synthetas	97.94
4g84_A	464	Histidine--tRNA ligase, cytoplasmic; synthetase; 2	97.86
1g5h_A	454	Mitochondrial DNA polymerase accessory subunit; in	97.76
3dsq_A	288	Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-t	97.71
4g85_A	517	Histidine-tRNA ligase, cytoplasmic; synthetase; 3.	97.67
3qtc_A	290	Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthet	96.35
1usy_A	275	ATP phosphoribosyltransferase regulatory subunit;	94.61
3a5y_A	345	GENX, putative lysyl-tRNA synthetase; aminoacyl-tR	92.2
2xgt_A	435	Asparaginyl-tRNA synthetase, cytoplasmic; ligase,	91.12
3m4p_A	456	Ehasnrs, asparaginyl-tRNA synthetase, putative; am	91.09
1nnh_A	294	Asparaginyl-tRNA synthetase-related peptide; struc	90.72
1eov_A	487	ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA sy	89.59
1c0a_A	585	Aspartyl tRNA synthetase; protein-RNA complex, lig	89.54
3nem_A	438	Aspartyl-tRNA synthetase; rossmann fold, OB fold,	89.3
1l0w_A	580	Aspartyl-tRNA synthetase; space-grown crystal, dim	89.06
1e1o_A	504	Lysyl-tRNA synthetase, heat inducible; ligase, ami	88.87
3a74_A	493	Lysyl-tRNA synthetase; aminoacyl tRNA synthetase,	88.87
3i7f_A	548	Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-bi	88.82
1n9w_A	422	Aspartyl-tRNA synthetase 2; biosynthetic protein;	88.34
3bju_A	521	Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase,	88.22
4ex5_A	529	Lysine--tRNA ligase; structural genomics, niaid, n	87.83
1wyd_A	429	Hypothetical aspartyl-tRNA synthetase; archaea, LI	87.6
1x54_A	434	Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthe	86.6
4f54_A	197	Uncharacterized protein; PF13590 family protein, D	82.46
4ah6_A	617	Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo	81.94

>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}

Probab=99.92  E-value=8.3e-26  Score=169.68  Aligned_cols=75  Identities=68%  Similarity=1.125  Sum_probs=72.0

Q ss_pred             CCCcccccccchhccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCCCCccccccC
Q psy10664          1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKM   75 (75)
Q Consensus         1 ~l~~~d~~~~~k~~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~i   75 (75)
                      ++|++||++|+|++|+|||+|+|.||+|++||++|+++++.++||++|.||+|++.++|++||||++|+|+||++
T Consensus       176 ~l~l~dfe~~~kvsGsgfy~l~p~GarL~raL~~f~~d~~~~~Gy~EV~~P~lv~~el~~~sG~l~~f~eemy~v  250 (522)
T 3vbb_A          176 MVDGFEGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQEVAQLSQFDEELYKV  250 (522)
T ss_dssp             HTTCEECHHHHHHHSTTCCEEETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHSCCC-CCSCCCEE
T ss_pred             hcCcEecccccccCCcceEEEcCHHHHHHHHHHHHHHHHHHHcCCEEEECCcccchHHHhhcCCcccCcccceEe
Confidence            479999999999999999999999999999999999999999999999999999999999999999999999974

>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*

Probab=99.92  E-value=4.8e-26  Score=169.78  Aligned_cols=75  Identities=52%  Similarity=0.914  Sum_probs=72.9

Q ss_pred             CCCcccccccc-hhccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCCCCccccccC
Q psy10664          1 MIDGVDSEAGA-IVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKM   75 (75)
Q Consensus         1 ~l~~~d~~~~~-k~~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~i   75 (75)
                      +||++||++++ |++|+|||+|+|.||+|++||++|+++++.++||++|.||+|++.++|++||||++|+|+||++
T Consensus       182 ~l~l~df~~~a~k~sGsgf~~~~p~GarL~~aL~~f~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~~~~f~e~mf~v  257 (484)
T 3lss_A          182 RLGMMDTSKAVTSMAGGRSYVLKGGLVQLQVALVSYSLDFLVKRGYTPFYPPFFLNRDVMGEVAQLSQFDEELYQV  257 (484)
T ss_dssp             HTTCEECSHHHHHHHCTTCCEEEHHHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHHHHHSCHHHHHHTCCEE
T ss_pred             hCCceeccccccccCCceEEEECCHHHHHHHHHHHHHHHHHHHcCCEEEecCccccHHHHHhcCCcccccccceEe
Confidence            47999999999 9999999999999999999999999999999999999999999999999999999999999974

>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A

Probab=99.91  E-value=4.5e-25  Score=165.88  Aligned_cols=74  Identities=18%  Similarity=0.418  Sum_probs=71.7

Q ss_pred             CCCcccccccchhccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCCCCccccccC
Q psy10664          1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKM   75 (75)
Q Consensus         1 ~l~~~d~~~~~k~~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~i   75 (75)
                      +||++| ++|+|++|+|||+|+|.||+|++||++|+++++.++||++|.||+|++.++|++|||||+|+|+||++
T Consensus       251 ~l~l~d-~~~~k~~G~g~~~~~p~Ga~l~~aL~~~~~~~~~~~Gy~ev~~P~lv~~~l~~~sG~~~~f~e~mf~~  324 (536)
T 3err_A          251 KNGWWE-PRISQVSGSRSYALKGDLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAI  324 (536)
T ss_dssp             HHTCBC-TTHHHHHCSSCCCEEHHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHTCTTTTGGGCCEE
T ss_pred             HcCCcc-cccccCCCCceeEEcCHHHHHHHHHHHHHHHHHHHcCCEEEeccccccHHHHHhcCCcccChhhceEe
Confidence            378999 99999999999999999999999999999999999999999999999999999999999999999974

>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A

Probab=99.91  E-value=2.2e-25  Score=166.24  Aligned_cols=75  Identities=52%  Similarity=0.851  Sum_probs=72.8

Q ss_pred             CCCcccccccchhccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCCCCccccccC
Q psy10664          1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKM   75 (75)
Q Consensus         1 ~l~~~d~~~~~k~~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~i   75 (75)
                      ++|++||++|+|++|+|||+|+|.||+|++||++|++|++.++||++|.||+|++.++|++||||++|+|+||++
T Consensus       160 ~l~l~df~~~~k~sGsg~~~l~p~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~l~~f~eemf~v  234 (485)
T 3qne_A          160 RLDGYDPERGVRIVGHRGYFLRNYGVFLNQALINYGLSFLSSKGYVPLQAPVMMNKEVMAKTAQLSQFDEELYKV  234 (485)
T ss_dssp             HTTCEEHHHHHHHHCTTCCEECTHHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHHHHHSCHHHHTTTCCEE
T ss_pred             hcCCcccccccccccceeEEEecHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCCccccccceEEE
Confidence            379999999999999999999999999999999999999999999999999999999999999999999999974

>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}

Probab=99.90  E-value=2.7e-24  Score=160.76  Aligned_cols=74  Identities=30%  Similarity=0.594  Sum_probs=72.3

Q ss_pred             CCcccccccchhccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCCCCcc-ccccC
Q psy10664          2 IDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDE-ELYKM   75 (75)
Q Consensus         2 l~~~d~~~~~k~~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e-~~y~i   75 (75)
                      +|++||+++++++|+|||+|+|.||+|++||++|+++++.++||++|.||+|++.++|++||||++|.+ +||++
T Consensus       195 lgl~d~~~~~k~~G~g~~~l~p~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~~~~f~e~emf~v  269 (501)
T 1wle_A          195 LDIIRQKRLSHVSGHRSYYLRGAGALLQHGLVNFTLNKLIHRGFTPMTVPDLLRGVVFEGCGMTPNAKPSQIYNI  269 (501)
T ss_dssp             HTCEECTTCTTTTCTTCCEEETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHHHTCCSSSSSCSSCBB
T ss_pred             cCceecccccccccCceEEEcChHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHHhhcCCCccCccccEEE
Confidence            689999999999999999999999999999999999999999999999999999999999999999998 99975

>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A

Probab=99.86  E-value=1.1e-22  Score=150.34  Aligned_cols=75  Identities=33%  Similarity=0.690  Sum_probs=72.7

Q ss_pred             CCCcccccccchhccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCCCCccccccC
Q psy10664          1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKM   75 (75)
Q Consensus         1 ~l~~~d~~~~~k~~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~i   75 (75)
                      ++|++||++++|++|+|||+|+|.|++|+++|++|+++.+.++||++|.||.|++.++|++|||+++|+++||++
T Consensus       168 ~l~l~d~~~~~k~~g~G~~~~~p~ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~  242 (455)
T 2dq0_A          168 ILGGADFARAAKVSGSRFYYLLNEIVILDLALIRFALDRLIEKGFTPVIPPYMVRRFVEEGSTSFEDFEDVIYKV  242 (455)
T ss_dssp             HTTCEESHHHHHHTCTTCCEEEHHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHTTSCTTHHHHTCCBB
T ss_pred             cCCcEEecccccccCCCeEEECCHHHHHHHHHHHHHHHHHHHcCCEEEeCCcccCHHHHHhcCCCCCChHhhCee
Confidence            379999999999999999999999999999999999999999999999999999999999999999999999975

>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A

Probab=99.85  E-value=3.3e-22  Score=146.52  Aligned_cols=73  Identities=18%  Similarity=0.430  Sum_probs=71.3

Q ss_pred             CCcccccccchhccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCCCCccccccC
Q psy10664          2 IDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKM   75 (75)
Q Consensus         2 l~~~d~~~~~k~~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~i   75 (75)
                      +|++| ++++|++|+|||+|+|.|++|+++|++|+++.+.++||++|.||.|++.++|++|||+++|+++||++
T Consensus       143 l~l~d-~~~~~~~g~G~~~~~p~ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~  215 (421)
T 1ses_A          143 NGWWE-PRISQVSGSRSYALKGDLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAI  215 (421)
T ss_dssp             HTCBC-TTHHHHHCSSCCCEETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHTCTTTTGGGSCBB
T ss_pred             cCccc-cccccccCCCeEEECcHHHHHHHHHHHHHHHHHHHcCCEEEeCCceecHHHHHhcCCCCcCchhcEEE
Confidence            68999 99999999999999999999999999999999999999999999999999999999999999999975

>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}

Probab=99.85  E-value=1.2e-21  Score=143.62  Aligned_cols=74  Identities=28%  Similarity=0.527  Sum_probs=72.5

Q ss_pred             CCcccccccchhccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCCCCccccccC
Q psy10664          2 IDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKM   75 (75)
Q Consensus         2 l~~~d~~~~~k~~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~i   75 (75)
                      +|++||++++|++|+|+|+|+|.|+.|+++|++|+++.+.++||++|.||.|++.++|++|||+++|+++||++
T Consensus       148 l~l~d~~~~~~~~g~G~~~~~p~ga~l~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~  221 (425)
T 2dq3_A          148 LGILDFKRGAKLSGSRFTVIAGWGARLERALINFMLDLHTKKGYKEICPPHLVKPEILIGTGQLPKFEEDLYKC  221 (425)
T ss_dssp             TTCEEHHHHHHHHCSSCCEEETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHHHSCTTTTGGGSCBC
T ss_pred             CCeEEecccccccCCCceEECcHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHHhcCCCCcChhhheEe
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999975

>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*

Probab=99.69  E-value=1.5e-17  Score=122.78  Aligned_cols=71  Identities=11%  Similarity=0.280  Sum_probs=67.3

Q ss_pred             CCCcccccccchhccCcceeecchHHHHHHHHHHHHHHHH-HhCCCeeeccCccchHHHHHHcCCCCCCccccccC
Q psy10664          1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKW-IEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKM   75 (75)
Q Consensus         1 ~l~~~d~~~~~k~~G~~~~~l~~~ga~L~~aL~~f~~~~~-~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~i   75 (75)
                      +|+++||++    +|+|+++|+|.|+.|+++|++|+++.+ .++||++|.||.|++.++|++|||+++|+++||++
T Consensus        43 ~l~l~~~~~----~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sGh~~~~~~emy~~  114 (460)
T 3uh0_A           43 RQDLFMTDP----LSPGSMFFLPNGAKIFNKLIEFMKLQQKFKFGFNEVVTPLIYKKTLWEKSGHWENYADDMFKV  114 (460)
T ss_dssp             HHTCEECCT----TSTTCCEECHHHHHHHHHHHHHHHHHHHHTSCCEECCCCSEEEHHHHHHHTCTTTSGGGSCEE
T ss_pred             hCCCceecc----CCCCcEEECccHHHHHHHHHHHHHHHHHHhcCCEEEECCeeccHHHHHhcCCccccccceEEE
Confidence            368999998    399999999999999999999999999 99999999999999999999999999999999963

>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A*

Probab=99.63  E-value=7.1e-17  Score=116.50  Aligned_cols=61  Identities=20%  Similarity=0.146  Sum_probs=58.5

Q ss_pred             cc-CcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCCCCccccccC
Q psy10664         14 AG-GRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKM   75 (75)
Q Consensus        14 ~G-~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~i   75 (75)
                      +| +|||.+.|.++.|+++|++|+++ +.++||++|.+|.|+++++|++||||++|.|+||++
T Consensus        51 ~g~~g~y~~~g~~a~L~~aLe~~~~~-~~~~Gy~ev~~P~lv~~~~~e~SGhl~~F~e~mf~v  112 (346)
T 3mf2_A           51 MGSDGVYARTALYESIVERLAALITS-HREAGTEALRFPPVMSRAQLEKSGYLKSFPNLLGCV  112 (346)
T ss_dssp             EEETTEEEEEHHHHHHHHHHHHHHHH-TCCTTCEEEECCSEEEHHHHHHTTHHHHCGGGCEEE
T ss_pred             cCCCceEEecchHHHHHHHHHHHHHh-hHhcCCeEEECCCccCHHHHHhcCCcccChhhccee
Confidence            45 99999999999999999999999 999999999999999999999999999999999973

>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1

Probab=99.59  E-value=3.9e-16  Score=118.78  Aligned_cols=69  Identities=14%  Similarity=0.251  Sum_probs=66.1

Q ss_pred             CCcccccccchhccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCCCCcccccc
Q psy10664          2 IDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYK   74 (75)
Q Consensus         2 l~~~d~~~~~k~~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~   74 (75)
                      |++++++++    |+|+++|+|.|+.+.++|++|+++.+.++||++|.||.|.+.++|++||||++|.++||+
T Consensus       251 l~l~~~~~~----~~G~~~~lP~g~~l~~~l~~~~r~~~~~~Gy~ev~tP~l~~~~l~~~sGh~~~~~~~my~  319 (642)
T 1qf6_A          251 LDLYHMQEE----APGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFT  319 (642)
T ss_dssp             TTCEECCTT----STTCCEECHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHHSHHHHHGGGCEE
T ss_pred             cCccccccC----CCCcEEECCcHHHHHHHHHHHHHHHHHHcCCEEEECCcCccHHHHhhcCcccccccccee
Confidence            688999873    999999999999999999999999999999999999999999999999999999999995

>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}

Probab=99.57  E-value=1.5e-15  Score=113.89  Aligned_cols=70  Identities=14%  Similarity=0.214  Sum_probs=64.5

Q ss_pred             CCCcccccccchhccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHH-cCCCCCCccccccC
Q psy10664          1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQE-VAQLAQFDEELYKM   75 (75)
Q Consensus         1 ~l~~~d~~~~~k~~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~-sG~~~~~~e~~y~i   75 (75)
                      ++|++|+     .+++|+++|+|.|+.|+++|++|+++.+.++||++|.||.|++.++|++ |||++.|+++||.+
T Consensus        41 ~~~lid~-----~~~~G~~~~lP~G~~i~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~k~sGh~~~f~~emy~~  111 (519)
T 4hvc_A           41 KSEMIEY-----HDISGCYILRPWAYAIWEAIKDFFDAEIKKLGVENCYFPMFVSQSALEKEKTHVADFAPEVAWV  111 (519)
T ss_dssp             HTTCEEE-----CSSTTCEEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCCSCGGGGGGCEEE
T ss_pred             HCCCeEe-----cCCCCeEEECccHHHHHHHHHHHHHHHHHHcCCEEEeccccccHHHHhcccCCcccccccceEE
Confidence            3678887     2678899999999999999999999999999999999999999999996 99999999999853

>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*

Probab=99.53  E-value=2.3e-15  Score=114.10  Aligned_cols=71  Identities=13%  Similarity=0.331  Sum_probs=67.6

Q ss_pred             CCcccccccchhccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCCCCccccccC
Q psy10664          2 IDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKM   75 (75)
Q Consensus         2 l~~~d~~~~~k~~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~i   75 (75)
                      |++++++.   .+|+|++.|+|.|+.+.++|++++++.+.++||++|.||.|.+.++|++||||+.|.++||++
T Consensus       250 l~l~~~~~---~~~~G~~~~lP~g~~~~~~l~~~ir~~~~~~Gy~eV~tP~l~~~~l~~~sG~~d~~~~~mf~~  320 (645)
T 1nyr_A          250 LELFTNSQ---LVGAGLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPP  320 (645)
T ss_dssp             TTCEEEET---TTEEEEEEECHHHHHHHHHHHHHHHHHHHHTTEEECBCCSEEETHHHHHHTHHHHCTTSSCCC
T ss_pred             cceEEecc---cCCCceeEECCCHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHhhCCCccccccCccee
Confidence            68888887   569999999999999999999999999999999999999999999999999999999999974

>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*

Probab=99.52  E-value=5.2e-15  Score=106.39  Aligned_cols=70  Identities=14%  Similarity=0.243  Sum_probs=66.5

Q ss_pred             CCCcccccccchhccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCCCCcccccc
Q psy10664          1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYK   74 (75)
Q Consensus         1 ~l~~~d~~~~~k~~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~   74 (75)
                      ++|+++++++    ++|++.|.|.|+.+.++|++++++.+.++||++|.||.+.+.++|++|||++.|.++||+
T Consensus         9 ~~~l~~~~~~----~~G~~d~lP~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sG~~~~~~~em~~   78 (401)
T 1evl_A            9 QLDLYHMQEE----APGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFT   78 (401)
T ss_dssp             HTTCEECCTT----STTCCEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTHHHHSGGGCCE
T ss_pred             hCCceEecCC----CCcceEECchHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHHhcCcHhhhchhhEe
Confidence            3789999883    899999999999999999999999999999999999999999999999999999999995

>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A

Probab=99.52  E-value=7.1e-15  Score=110.41  Aligned_cols=64  Identities=13%  Similarity=0.118  Sum_probs=60.5

Q ss_pred             hhccCcceeecchHHHHHHHHHHHHHHH-HHhCCCeeeccCccchHHHHHHcCCCCCCccccccC
Q psy10664         12 IVAGGRGYFLKGPAVCLQVGLVQYALSK-WIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKM   75 (75)
Q Consensus        12 k~~G~~~~~l~~~ga~L~~aL~~f~~~~-~~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~i   75 (75)
                      +.+|+|+|+|.|.|+.|+++|++|+++. +.+.||++|.+|.|++.++|++|||+++|.++||++
T Consensus       217 ~~~~~G~y~~~P~G~~L~~~L~~~~~~e~~~~~G~~EV~tP~L~~~el~~~SGh~~~F~demy~v  281 (522)
T 2cja_A          217 RGSSRGQWIHGPQSARIFRTFEKIVLEELLEPLGYREMIFPKLVTWEVWMKSGHAKGVYPEIYYV  281 (522)
T ss_dssp             ECSSTTCEEECHHHHHHHHHHHHHHHHHTHHHHTCEECBCCSEEEHHHHHHHTGGGTCGGGCCEE
T ss_pred             eeCCCCeEEECchHHHHHHHHHHHHHHHHHHHcCCEEEECCCcccHHHHhhcCCcCccccceeee
Confidence            3589999999999999999999999985 889999999999999999999999999999999964

>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803}

Probab=99.48  E-value=7.4e-15  Score=110.18  Aligned_cols=71  Identities=10%  Similarity=0.204  Sum_probs=65.3

Q ss_pred             CCCcccccccchhccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHH-HcCCCCCCccccccC
Q psy10664          1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQ-EVAQLAQFDEELYKM   75 (75)
Q Consensus         1 ~l~~~d~~~~~k~~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~-~sG~~~~~~e~~y~i   75 (75)
                      +.|++|+ |.   +++|+++|+|.|+.+.++|++|+++.+.+.||++|.||.|++.++|+ .|||++.|+++||.+
T Consensus        34 ~aglid~-r~---~~~G~~~~lP~G~~i~~~L~~~~~~~~~~~Gy~eV~tP~l~~~el~~k~sgh~~~f~~emy~v  105 (518)
T 3ial_A           34 AAELVDR-RY---PVKGCVVFRPYGFFMENAIMRLCEEEYAKVGISQILFPTVIPESFLKKESDHIKGFEAECFWV  105 (518)
T ss_dssp             HTTCEET-TS---SSTTCCEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTSSHHHHHHHGGGCEEE
T ss_pred             HCCCccc-CC---CCCCeEEECccHHHHHHHHHHHHHHHHHHcCCEEEEcccccCHHHHHhhcCCcccccccEEEE
Confidence            3688888 42   68999999999999999999999999999999999999999999996 699999999999964

>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*

Probab=99.44  E-value=1.9e-14  Score=106.98  Aligned_cols=70  Identities=7%  Similarity=0.088  Sum_probs=64.6

Q ss_pred             CCCcccccccchhccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHH-cCCCCCCccccccC
Q psy10664          1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQE-VAQLAQFDEELYKM   75 (75)
Q Consensus         1 ~l~~~d~~~~~k~~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~-sG~~~~~~e~~y~i   75 (75)
                      ++|++|++++    .+|+++|+|.|+.|+++|++++++.+.+ ||++|.||.+++.++|++ |||++.|+++||++
T Consensus        50 ~~glid~~~~----~~G~~~~~P~g~~l~~~i~~~~~~~~~~-G~~ei~tP~l~~~~l~~~~sG~~~~f~~emy~~  120 (501)
T 1nj1_A           50 EAEIIDQRYP----VKGMHVWMPHGFMIRKNTLKILRRILDR-DHEEVLFPLLVPEDELAKEAIHVKGFEDEVYWV  120 (501)
T ss_dssp             HTTCEECCCS----STTCCEECHHHHHHHHHHHHHHHHHHTT-TCEECCCCSEEEHHHHTTSHHHHHHTTTTCCEE
T ss_pred             HCCCccccCC----CCceEEECccHHHHHHHHHHHHHHHHHc-CCEEEecCcEecHHHHhcccCCcccCCcceEEE
Confidence            3688998664    4899999999999999999999999989 999999999999999998 99999999999974

>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*

Probab=99.38  E-value=1.7e-13  Score=102.21  Aligned_cols=62  Identities=13%  Similarity=0.172  Sum_probs=59.8

Q ss_pred             ccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCCCCccccccC
Q psy10664         14 AGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKM   75 (75)
Q Consensus        14 ~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~i   75 (75)
                      +++|++.|+|.|+.+.++|++++++.+.++||++|.||.+.+.++|+.|||++.|+++||++
T Consensus        35 ~~~G~~~~lP~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sG~~~~~~~~m~~~   96 (572)
T 2j3l_A           35 VAAGIYSYLPLANRVLEKLKTIMREEFEKIDAVEMLMPALLPAELWKESGRYETYGPNLYRL   96 (572)
T ss_dssp             EETTEEEECHHHHHHHHHHHHHHHHHHHTTTCEECBCCSEEETHHHHHHSHHHHSCTTSCEE
T ss_pred             cCCCeeeeCCHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHHhcCCccccchheEEE
Confidence            58999999999999999999999999999999999999999999999999999999999973

>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*

Probab=99.33  E-value=3.5e-13  Score=100.29  Aligned_cols=59  Identities=15%  Similarity=0.101  Sum_probs=57.5

Q ss_pred             CcceeecchHHHHHHHHHHHHHHHHH--hCCCeeeccCccchHHHHHHcCCCCCCcccccc
Q psy10664         16 GRGYFLKGPAVCLQVGLVQYALSKWI--EKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYK   74 (75)
Q Consensus        16 ~~~~~l~~~ga~L~~aL~~f~~~~~~--~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~   74 (75)
                      +|+|.|.|.|+.|.+.|++++++.+.  +.||.+|.||.|.+.++|+.||||++|.|+||+
T Consensus        29 ~G~~d~~P~G~~l~~~l~~~~r~~~~~~~~g~~ev~tP~l~~~~l~~~SGh~~~f~d~m~~   89 (505)
T 1ati_A           29 QGVYDYGPLGVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRLVLHYSGHEATFADPMVD   89 (505)
T ss_dssp             TTCEEECHHHHHHHHHHHHHHHHHHTTSCSSEEEEBCCSEEETTHHHHTSHHHHCEEEEEE
T ss_pred             CCcceeCccHHHHHHHHHHHHHHHHHHhhCCcEEEEccccCCHHHHHhcCChhhcCcccee
Confidence            89999999999999999999999998  899999999999999999999999999999986

>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A

Probab=99.29  E-value=2.6e-12  Score=94.47  Aligned_cols=62  Identities=13%  Similarity=0.228  Sum_probs=60.1

Q ss_pred             ccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCCCCccccccC
Q psy10664         14 AGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKM   75 (75)
Q Consensus        14 ~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~i   75 (75)
                      +++|++.|+|.|+.+.++|++++++.+.++||++|.||.+.+.++|++|||++.|.++||++
T Consensus        37 ~~~G~~d~lP~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sg~~~~~~~emy~~   98 (471)
T 3a32_A           37 TGAGVPLFSLGGGPIRYALAEVLAKFHARRGYYVVETPIIASTELFKVSGHIEFYRNNMYLF   98 (471)
T ss_dssp             HCTTCCCBCTTHHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHTCCCTTGGGGSEEE
T ss_pred             cCCEEEEECchHHHHHHHHHHHHHHHHHHcCCEEEECCeeeehHHhhhccCccccccceEEE
Confidence            79999999999999999999999999999999999999999999999999999999999973

>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1

Probab=99.28  E-value=3.3e-12  Score=93.97  Aligned_cols=71  Identities=10%  Similarity=0.077  Sum_probs=64.4

Q ss_pred             CCCcccccccchhccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHH-cCCCCCCccccccC
Q psy10664          1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQE-VAQLAQFDEELYKM   75 (75)
Q Consensus         1 ~l~~~d~~~~~k~~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~-sG~~~~~~e~~y~i   75 (75)
                      +.|++|++.+    .+|++.|+|.|+.+.+.|++++++.+.+.||++|.||.+.+.++|++ +||++.|.++||++
T Consensus        17 ~~~li~~~~~----~~G~~d~lP~g~~l~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~G~~~~~~~emy~~   88 (459)
T 1nj8_A           17 KAEIYDVRYP----IKGCGVYLPYGFKIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYWV   88 (459)
T ss_dssp             HTSSCBCCST----TSSCCBBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHCSSSGGGGGGCEEE
T ss_pred             hCCCccccCC----CCceEEECChHHHHHHHHHHHHHHHHHHcCCEEeeCCcccCHHHHhhhcCcccccchhhEEE
Confidence            3578888653    48899999999999999999999999999999999999999999985 99999999999963

>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A

Probab=99.23  E-value=2.9e-12  Score=94.79  Aligned_cols=69  Identities=14%  Similarity=0.183  Sum_probs=55.5

Q ss_pred             CCcccccccchhccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHH-cCCCCCCccccccC
Q psy10664          2 IDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQE-VAQLAQFDEELYKM   75 (75)
Q Consensus         2 l~~~d~~~~~k~~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~-sG~~~~~~e~~y~i   75 (75)
                      .|++++.     +.+|++.|+|.|+.+.+.|++++++.+.+.||++|.||.+.+.++|++ |||++.|.++||.+
T Consensus        25 ~~li~~~-----~~~G~~d~lP~g~~l~~~I~~~~r~~~~~~G~~ei~tP~l~~~el~~~~sgh~d~f~~emy~~   94 (477)
T 1hc7_A           25 AELADYG-----PVRGTIVVRPYGYAIWENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAVV   94 (477)
T ss_dssp             TTSEEEC-----SSTTCEEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEESTTC---------CCTTCEEE
T ss_pred             CCCeeec-----CCCCeEEECccHHHHHHHHHHHHHHHHHHcCCEEEecCccccHHHHhhcCCcccccccceEEE
Confidence            4667664     368899999999999999999999999999999999999999999988 99999999999964

>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*

Probab=99.21  E-value=5.9e-12  Score=92.25  Aligned_cols=62  Identities=11%  Similarity=0.113  Sum_probs=59.5

Q ss_pred             ccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCCCCccccccC
Q psy10664         14 AGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKM   75 (75)
Q Consensus        14 ~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~i   75 (75)
                      +++|+|.|.|.|+.+.++|++++++.+.++||++|.||.+.+.++|+.||||+.|.++||++
T Consensus        55 ~~~G~~d~lP~g~~~~~~i~~~ir~~~~~~G~~ei~tP~l~~~el~~~sg~~d~~~~em~~~  116 (458)
T 2i4l_A           55 EAAGIYAWLPLGHRVLKKIEQIVREEQNRAGAIELLMPTLQLADLWRESGRYDAYGPEMLRI  116 (458)
T ss_dssp             EETTEEEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTHHHHSCTTSEEE
T ss_pred             cCCcceEECCCHHHHHHHHHHHHHHHHHHcCCEEEEcCccCcHHHHHhcCCccccccceEEE
Confidence            57999999999999999999999999999999999999999999999999999999999973

>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1

Probab=99.10  E-value=3.6e-11  Score=86.21  Aligned_cols=62  Identities=10%  Similarity=0.002  Sum_probs=50.0

Q ss_pred             ccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHc--CCCCCCccccccC
Q psy10664         14 AGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEV--AQLAQFDEELYKM   75 (75)
Q Consensus        14 ~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~s--G~~~~~~e~~y~i   75 (75)
                      ..+|++.|+|.|+.+.++|++++++.+.++||++|.||.+.+.++|+++  ||++.|.++||++
T Consensus         4 ~~~G~~~~~p~~~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~g~~~~~~~~~m~~~   67 (420)
T 1qe0_A            4 IPRGTQDILPEDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTF   67 (420)
T ss_dssp             CCTTCCCBCHHHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHCC-----------CCEEE
T ss_pred             CCCcccccCHHHHHHHHHHHHHHHHHHHHcCCEEccCcccchHHHhhhccCCccchhhhheEEE
Confidence            3578999999999999999999999999999999999999999999999  9999999999963

>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}

Probab=99.01  E-value=1.5e-10  Score=85.21  Aligned_cols=62  Identities=13%  Similarity=0.059  Sum_probs=58.0

Q ss_pred             ccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHc-CC-CCCCccccccC
Q psy10664         14 AGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEV-AQ-LAQFDEELYKM   75 (75)
Q Consensus        14 ~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~s-G~-~~~~~e~~y~i   75 (75)
                      ..+|++.|+|+++.+.+.|++++++...++||++|.||.+.+.++|.++ || ++.++++||++
T Consensus        34 ~~~G~~d~lP~~~~~~~~l~~~i~~~~~~~Gy~eI~tP~le~~el~~~~~G~~~d~~~~~my~~   97 (467)
T 4e51_A           34 GVKGMNDILPQDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTPLFTRGIGEVTDIVEKEMYSF   97 (467)
T ss_dssp             CCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTCTTSHHHHHTCCEE
T ss_pred             CCCCceeeCHHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhccCCcccccccceEEE
Confidence            4789999999999999999999999999999999999999999999999 99 67788999963

>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A

Probab=98.97  E-value=2e-10  Score=88.42  Aligned_cols=59  Identities=14%  Similarity=0.201  Sum_probs=56.1

Q ss_pred             CcceeecchHHHHHHHHHHHHHHHHH-hCCCeeeccCccchHHHHHHcCCCCCCcccccc
Q psy10664         16 GRGYFLKGPAVCLQVGLVQYALSKWI-EKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYK   74 (75)
Q Consensus        16 ~~~~~l~~~ga~L~~aL~~f~~~~~~-~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~   74 (75)
                      +|+|.|.|.|+.+.+.|++++++... +.||.+|.||.|.+.++|+.||||.+|.|.|++
T Consensus        91 ~G~~d~lP~G~~l~~~Ie~~~r~~~~~~~g~~EV~tP~l~~~~lwk~SGH~~~f~d~m~~  150 (693)
T 2zt5_A           91 SGLYDFGPVGCALKNNIIQTWRQHFIQEEQILEIDCTMLTPEPVLKTSGHVDKFADFMVK  150 (693)
T ss_dssp             TTCEEECHHHHHHHHHHHHHHHHHTHHHHTCEECCCCSEEEHHHHHHHTHHHHCEEEEEE
T ss_pred             CCeEEECCChHHHHHHHHHHHHHHHHHhcCcEEEEeCCcccHHHHhhcCCccccccccee
Confidence            89999999999999999999999887 569999999999999999999999999998874

>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A

Probab=98.79  E-value=5.1e-09  Score=75.13  Aligned_cols=62  Identities=19%  Similarity=0.193  Sum_probs=58.3

Q ss_pred             ccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHc-CC-CCCCccccccC
Q psy10664         14 AGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEV-AQ-LAQFDEELYKM   75 (75)
Q Consensus        14 ~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~s-G~-~~~~~e~~y~i   75 (75)
                      ..+|++.|+|.++.+.+.|++.+++...++||++|.||.+-..++|+.+ |+ |+.+.++||++
T Consensus         5 ~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~   68 (421)
T 1h4v_B            5 AVRGTKDLFGKELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVRKEMFTF   68 (421)
T ss_pred             CCCCCCCcCHHHHHHHHHHHHHHHHHHHHcCCEEecccccccHHHhhhccCCcccccccceEEE
Confidence            4689999999999999999999999999999999999999999999999 88 88899899863

>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*

Probab=98.73  E-value=5.4e-09  Score=75.03  Aligned_cols=62  Identities=10%  Similarity=0.074  Sum_probs=57.7

Q ss_pred             ccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHc-CC-CCCCccccccC
Q psy10664         14 AGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEV-AQ-LAQFDEELYKM   75 (75)
Q Consensus        14 ~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~s-G~-~~~~~e~~y~i   75 (75)
                      ..+|++.|+|.++.+.+.+++.+++...++||++|.||.+-..++|+.+ |+ ++.++++||++
T Consensus         6 ~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~   69 (423)
T 1htt_A            6 AIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTF   69 (423)
T ss_dssp             CCTTCCCBCHHHHHHHHHHHHHHHHHHHTTTCEECBCCSEEEHHHHHHHHCSSSHHHHHTCEEE
T ss_pred             CCCCccccCHHHHHHHHHHHHHHHHHHHHcCCEEecccccCHHHHHhhccCCchhhhhhheEEE
Confidence            5789999999999999999999999999999999999999999999998 88 77788888863

>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*

Probab=98.69  E-value=2.2e-08  Score=71.30  Aligned_cols=61  Identities=10%  Similarity=0.038  Sum_probs=58.2

Q ss_pred             ccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHc--CCCCCCcccccc
Q psy10664         14 AGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEV--AQLAQFDEELYK   74 (75)
Q Consensus        14 ~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~s--G~~~~~~e~~y~   74 (75)
                      ..+|++.|.|.++.+.+.+++.+++...++||++|.||.+-..++|+.|  |+++.++++||+
T Consensus        24 ~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~Gy~eI~tP~le~~el~~~s~~g~~~~~~~~my~   86 (344)
T 1z7m_A           24 LPEESAEMTLNQVKSLRQIEGRLRKLFSLKNYQEVMPPSFEYTQLYTALESNGKTFNQEKMFQ   86 (344)
T ss_dssp             CCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHCSSSCCCTTSCCE
T ss_pred             CCCCcccCCHHHHHHHHHHHHHHHHHHHHcCCEEecCcccCcHHHHhhccCCccccccccEEE
Confidence            5789999999999999999999999999999999999999999999987  999999999996

>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1

Probab=98.66  E-value=2.3e-08  Score=72.28  Aligned_cols=61  Identities=7%  Similarity=-0.055  Sum_probs=56.6

Q ss_pred             hccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHH-cCCCCCCccccccC
Q psy10664         13 VAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQE-VAQLAQFDEELYKM   75 (75)
Q Consensus        13 ~~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~-sG~~~~~~e~~y~i   75 (75)
                      -..+|++.|+|.++.+.+.|++.+++...++||++|.||.+-..++|+. +|+  .+.++||++
T Consensus         7 ~~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~--~~~~em~~~   68 (434)
T 1wu7_A            7 EKIRGFRDFYPEDMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSGE--ELLQQTYSF   68 (434)
T ss_dssp             CCCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETHHHHTTSCT--TGGGGSCEE
T ss_pred             CCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHhhhccCC--ccccceEEE
Confidence            3578999999999999999999999999999999999999999999998 798  688889863

>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}

Probab=98.51  E-value=1.7e-07  Score=67.50  Aligned_cols=60  Identities=10%  Similarity=0.002  Sum_probs=54.9

Q ss_pred             ccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCCCCc-cccccC
Q psy10664         14 AGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFD-EELYKM   75 (75)
Q Consensus        14 ~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~-e~~y~i   75 (75)
                      ..+|++.|+|+++.+.+.|++.+++...++||++|.||.+-..++|..+|  ..++ ++||++
T Consensus        25 ~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~el~~~~g--~~~~~~~my~~   85 (373)
T 3rac_A           25 RPPGMQDGYPDFAKRRRAVETRLLSFVEDAGYEPVTSGLFEYVDTLLRAR--SPESSRDWIRL   85 (373)
T ss_dssp             CCTTCCCCCTTHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHTTS--CTTSCCCCCBC
T ss_pred             CCCCccccCHHHHHHHHHHHHHHHHHHHHcCCeEEECCceeeHHHHhhcC--CccchhceEEE
Confidence            46889999999999999999999999999999999999999999999998  4566 788874

>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}

Probab=98.40  E-value=2.2e-07  Score=67.36  Aligned_cols=60  Identities=17%  Similarity=0.041  Sum_probs=55.3

Q ss_pred             ccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCCCCccccccC
Q psy10664         14 AGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKM   75 (75)
Q Consensus        14 ~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~i   75 (75)
                      ..+|+..|+|+++.+.+.|++.+++...++||++|.||.+-..++|..+|  +.++++||++
T Consensus        12 ~p~G~~d~lP~~~~~~~~i~~~l~~~~~~~Gy~eI~tP~lE~~el~~~~g--~~~~~~my~f   71 (400)
T 3od1_A           12 KPFGMRDTLPEWYKTKKNICDQMTEEINLWGYDMIETPTLEYYETVGVVS--AILDQQLFKL   71 (400)
T ss_dssp             CCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETTTHHHHS--SSCGGGSCEE
T ss_pred             CCCcchhcCHHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcC--CccccceEEE
Confidence            46889999999999999999999999999999999999999999999987  5678889863

>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}

Probab=98.19  E-value=3.5e-07  Score=67.94  Aligned_cols=52  Identities=13%  Similarity=-0.004  Sum_probs=43.9

Q ss_pred             cCcceeecchHHHHHHHHHH-HHHHHHHhCC-CeeeccCccchHHHHHHcCCCCCCc
Q psy10664         15 GGRGYFLKGPAVCLQVGLVQ-YALSKWIEKG-YTPLYTPFFMRKEVMQEVAQLAQFD   69 (75)
Q Consensus        15 G~~~~~l~~~ga~L~~aL~~-f~~~~~~~~G-y~~v~~P~i~~~~~~~~sG~~~~~~   69 (75)
                      +.++++|.|+|..|.+.|++ |...+..++| +.+|.||.   .++|+.||||++|.
T Consensus        93 ~g~~p~~gP~G~~l~~nl~~~w~~~~~~~~~~~~eV~tp~---~~~~~~SGH~d~~~  146 (459)
T 3ikl_A           93 SGCHPGFGPLGVELRKNLAAEWWTSVVVFREQVFPVDALH---HKPGPLLPGDSAFR  146 (459)
T ss_dssp             TTCSCCBCHHHHHHHHHHHHHHHHHHTTSSCSCEECCCCS---BCCSCCCSSCSCCT
T ss_pred             cccccccCCcHHHHHHHHHHHHHHHHhhccCceEeecccc---ccccccCcchhhhc
Confidence            44566999999999999998 6666666677 77799999   67799999999997

>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A

Probab=98.15  E-value=5.6e-07  Score=66.23  Aligned_cols=59  Identities=10%  Similarity=0.070  Sum_probs=53.6

Q ss_pred             ccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHH-cCCCCCCcccccc
Q psy10664         14 AGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQE-VAQLAQFDEELYK   74 (75)
Q Consensus        14 ~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~-sG~~~~~~e~~y~   74 (75)
                      ..+|+..|.|+++.+.+.|++.+++...++||++|.||.+-..++|.. +|+.  ++++||+
T Consensus        31 ~p~G~~d~lP~~~~~~~~i~~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~G~~--~~~~my~   90 (456)
T 3lc0_A           31 PVQGCRDFPPEAMRCRRHLFDVFHATAKTFGFEEYDAPVLESEELYIRKAGEE--ITEQMFN   90 (456)
T ss_dssp             CSTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEGGGGCCCSCCH--HHHTCEE
T ss_pred             CCCCCcccCHhHHHHHHHHHHHHHHHHHHCCCEEEECCcEeehhhhccccccc--hhhceEE
Confidence            468899999999999999999999999999999999999999999986 4874  6778886

>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}

Probab=97.94  E-value=9.5e-06  Score=59.49  Aligned_cols=58  Identities=24%  Similarity=0.201  Sum_probs=50.8

Q ss_pred             cCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCCCCcccccc
Q psy10664         15 GGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYK   74 (75)
Q Consensus        15 G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~   74 (75)
                      -.|+.-|.|+.+.+.+.|++.+++...++||++|.||.+-..++|..+|  ...+|+||+
T Consensus        15 p~G~~D~lP~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~~E~~~~~~~~G--~~~ke~m~~   72 (465)
T 3net_A           15 PSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKG--NQGDNIIYG   72 (465)
T ss_dssp             CTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHGGG--CC--CBEEE
T ss_pred             CCCccccCHHHHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHHhccC--CCCccceEE
Confidence            4678889999999999999999999999999999999999999999987  444555886

>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}

Probab=97.86  E-value=2.1e-05  Score=56.78  Aligned_cols=58  Identities=12%  Similarity=0.103  Sum_probs=47.7

Q ss_pred             cCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCCCCcccccc
Q psy10664         15 GGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYK   74 (75)
Q Consensus        15 G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~   74 (75)
                      -.|+.-|.|+++.+.+.+++.+++...++||++|.||.+-..++|..+.-  ...++||+
T Consensus        17 p~G~~D~lP~~~~~~~~i~~~~~~~~~~~Gy~eI~tP~le~~el~~~~~g--~~~~~~y~   74 (464)
T 4g84_A           17 PKGTRDYSPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYG--EDSKLIYD   74 (464)
T ss_dssp             CTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCC------CCCB
T ss_pred             CCCcCccCHHHHHHHHHHHHHHHHHHHHCCCeEEECcccCcHHHhccccC--cCcceeEE
Confidence            45788899999999999999999999999999999999999999865432  23456775

>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*

Probab=97.76  E-value=1.3e-06  Score=64.33  Aligned_cols=55  Identities=9%  Similarity=-0.133  Sum_probs=48.8

Q ss_pred             cce-eecchHHHHHHHHHHHHHHHH--HhCCCeeeccCccchHHHHHHc--CC---CCCCccc
Q psy10664         17 RGY-FLKGPAVCLQVGLVQYALSKW--IEKGYTPLYTPFFMRKEVMQEV--AQ---LAQFDEE   71 (75)
Q Consensus        17 ~~~-~l~~~ga~L~~aL~~f~~~~~--~~~Gy~~v~~P~i~~~~~~~~s--G~---~~~~~e~   71 (75)
                      |.+ .|.|.|+.|.+.|++++.+.+  .+.||.+|.||.+++.++|+++  ||   +++|.|+
T Consensus        52 G~~~~~~P~G~~l~~~i~~~~~~~~~~~~~g~~ev~tp~l~~~~~~~~s~~g~~~r~d~~~e~  114 (454)
T 1g5h_A           52 GCHARFGPLGVELRKNLASQWWSSMVVFREQVFAVDSLHQEPGSSQPRDSAFRLVSPESIREI  114 (454)
T ss_dssp             CCSCCBCHHHHHHHHHHHHHHHHHHTTTCTTEEECCCCSEECCCCSSCCCCCEEECHHHHHHH
T ss_pred             cceeeeCchHHHHHHHHHHHHHHHHhhhcCCeEEEEcCccCChhhccccccCcccHHHHHHHH
Confidence            434 999999999999999999885  5789999999999999999987  88   8888764

>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A

Probab=97.71  E-value=3.8e-05  Score=53.56  Aligned_cols=38  Identities=13%  Similarity=0.224  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCC
Q psy10664         29 QVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLA   66 (75)
Q Consensus        29 ~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~   66 (75)
                      .+++++++++.+.+.||++|.||.+.+.++++.+||++
T Consensus        73 ~~~l~~~ir~~~~~~Gf~EV~tP~Le~~~l~~~~g~~~  110 (288)
T 3dsq_A           73 LLELEEKLAKALHQQGFVQVVTPTIITKSALAKMTIGE  110 (288)
T ss_dssp             HHHHHHHHHHHHHTTTCEECCCCSEEEHHHHHTTSSCC
T ss_pred             HHHHHHHHHHHHHHCCCEEEECCeeecHHHHhhcCCCc
Confidence            47899999999999999999999999999999999987

>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}

Probab=97.67  E-value=4.1e-05  Score=56.50  Aligned_cols=57  Identities=12%  Similarity=0.114  Sum_probs=45.7

Q ss_pred             CcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCCCCcccccc
Q psy10664         16 GRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYK   74 (75)
Q Consensus        16 ~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~   74 (75)
                      .|+.=|.|+++.+.+.+++.+++...++||++|.||.+-..++|.++..  ...++||+
T Consensus        71 ~G~~D~lP~~~~~~~~ie~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~g--e~~~~my~  127 (517)
T 4g85_A           71 KGTRDYSPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYG--EDSKLIYD  127 (517)
T ss_dssp             TTCCCBCHHHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHHCC--------CSCB
T ss_pred             CCCCccCHHHHHHHHHHHHHHHHHHHHCCCeEEECcccCcHHHhhcccC--cCcceeEE
Confidence            3566689999999999999999999999999999999999999865432  33566775

>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A*

Probab=96.35  E-value=0.0047  Score=42.53  Aligned_cols=38  Identities=11%  Similarity=0.235  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCC
Q psy10664         29 QVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLA   66 (75)
Q Consensus        29 ~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~   66 (75)
                      .+.+++.+++.+..+||++|.||.+...+.+...+...
T Consensus        79 ~~~i~~~ir~~l~~~Gf~EV~Tp~l~~~~~~~~~~~~~  116 (290)
T 3qtc_A           79 LGKLEREITRFFVDRGFLEIKSPILIPLEYIERMGIDN  116 (290)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECCCSEEETHHHHHTTCCT
T ss_pred             HHHHHHHHHHHHHHCCCEEEECCceeeHHHHHhcCCCc
Confidence            46788889999999999999999999999998877654

>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C*

Probab=94.61  E-value=0.007  Score=41.49  Aligned_cols=31  Identities=23%  Similarity=0.384  Sum_probs=27.6

Q ss_pred             HHHHHHH--HHHHhCCCeeeccCccchHHHHHH
Q psy10664         31 GLVQYAL--SKWIEKGYTPLYTPFFMRKEVMQE   61 (75)
Q Consensus        31 aL~~f~~--~~~~~~Gy~~v~~P~i~~~~~~~~   61 (75)
                      .|+++++  +...++||++|.||.+-+.++|..
T Consensus         5 ~le~~~r~~~~~~~~Gy~eI~tP~le~~~l~~~   37 (275)
T 1usy_A            5 DFEKVFSFYSKATKKGFSPFFVPALEKAEEPAG   37 (275)
T ss_dssp             CHHHHHHHHHHHHHTTCEECCCCSEEECSSCCS
T ss_pred             hHHHHHHHHHHHHHCCCEEecCccccchhhhcc
Confidence            4778888  899999999999999999998865

>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*

Probab=92.20  E-value=0.13  Score=36.50  Aligned_cols=35  Identities=11%  Similarity=0.189  Sum_probs=31.2

Q ss_pred             chHHHHHHHHHHHHHHHHHhCCCeeeccCccchHH
Q psy10664         23 GPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKE   57 (75)
Q Consensus        23 ~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~   57 (75)
                      ..-.+++..+++.+++++.++||.+|-||.|....
T Consensus        33 ~~~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~   67 (345)
T 3a5y_A           33 IPNLLKRAAIMAEIRRFFADRGVLEVETPCMSQAT   67 (345)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEecC
Confidence            35678899999999999999999999999999754

>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*

Probab=91.12  E-value=0.18  Score=36.74  Aligned_cols=35  Identities=14%  Similarity=0.320  Sum_probs=30.5

Q ss_pred             hHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHH
Q psy10664         24 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEV   58 (75)
Q Consensus        24 ~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~   58 (75)
                      .-.+++..+++.+++++.++||.+|-||.|..+..
T Consensus       130 ~~~r~Rs~i~~~iR~ff~~~gFlEVeTPiL~~s~~  164 (435)
T 2xgt_A          130 ALLRLRAAATRAMREHFYNAGYVEVAPPTLVQTQV  164 (435)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEECCCCSEESCCS
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCEEEECCeEeeccC
Confidence            35678889999999999999999999999987643

>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A

Probab=91.09  E-value=0.2  Score=36.91  Aligned_cols=35  Identities=11%  Similarity=0.265  Sum_probs=29.2

Q ss_pred             hHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHH
Q psy10664         24 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEV   58 (75)
Q Consensus        24 ~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~   58 (75)
                      .-.+++.++++.+++++.++||.+|-||.|.....
T Consensus       154 ~~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~s~~  188 (456)
T 3m4p_A          154 QVLQLRSEIQWYFRKYYHDNHFTEIQPPTIVKTQC  188 (456)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEECCCCSEEC---
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCEEEeCCeeecCCC
Confidence            45678889999999999999999999999987654

>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*

Probab=90.72  E-value=0.29  Score=33.79  Aligned_cols=34  Identities=15%  Similarity=0.361  Sum_probs=30.7

Q ss_pred             chHHHHHHHHHHHHHHHHHhCCCeeeccCccchH
Q psy10664         23 GPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRK   56 (75)
Q Consensus        23 ~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~   56 (75)
                      ..-.++...+++.+++.+.++||.+|.||.+...
T Consensus        12 ~~~~~~rs~i~~~ir~~f~~~GF~EVeTP~l~~~   45 (294)
T 1nnh_A           12 SPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPI   45 (294)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCEEECCCCEESC
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEc
Confidence            4567889999999999999999999999999887

>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*

Probab=89.59  E-value=0.34  Score=35.86  Aligned_cols=34  Identities=18%  Similarity=0.233  Sum_probs=30.5

Q ss_pred             hHHHHHHHHHHHHHHHHHhCCCeeeccCccchHH
Q psy10664         24 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKE   57 (75)
Q Consensus        24 ~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~   57 (75)
                      .-.+++..+++.+++++.++||.+|-||.|...+
T Consensus       176 ~~~~~rs~i~~~ir~~~~~~gF~EV~TPil~~~~  209 (487)
T 1eov_A          176 AIFRIQAGVCELFREYLATKKFTEVHTPKLLGAP  209 (487)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC
T ss_pred             HHHHHHHHHHHHHHHHHHhCCcEEEeCCEEEEec
Confidence            4568889999999999999999999999998854

>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*

Probab=89.54  E-value=0.29  Score=37.10  Aligned_cols=33  Identities=9%  Similarity=0.189  Sum_probs=29.3

Q ss_pred             hHHHHHHHHHHHHHHHHHhCCCeeeccCccchH
Q psy10664         24 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRK   56 (75)
Q Consensus        24 ~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~   56 (75)
                      .-.+++..+++.+++++.++||.+|-||.|.++
T Consensus       136 ~~l~~Rs~i~~~iR~fl~~~gFlEVeTPiL~~s  168 (585)
T 1c0a_A          136 QRLKTRAKITSLVRRFMDDHGFLDIETPMLTKA  168 (585)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEECCCCSSBCC
T ss_pred             HHHHHHHHHHHHHHHHHHhCCcEEEeCCEEecC
Confidence            345788899999999999999999999999965

>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*

Probab=89.30  E-value=0.35  Score=35.42  Aligned_cols=34  Identities=12%  Similarity=0.233  Sum_probs=30.0

Q ss_pred             hHHHHHHHHHHHHHHHHHhCCCeeeccCccchHH
Q psy10664         24 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKE   57 (75)
Q Consensus        24 ~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~   57 (75)
                      .-.+++.++.+.+++++.++||.+|-||.|....
T Consensus       135 ~~~~~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~  168 (438)
T 3nem_A          135 AIFKIRSSVFKAVRDFFHENGFIEIHTPKIIATA  168 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC
T ss_pred             HHHHHHHHHHHHHHHHHHHCCcEEEeCCEEecCC
Confidence            3567888999999999999999999999998764

>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A

Probab=89.06  E-value=0.32  Score=36.83  Aligned_cols=32  Identities=16%  Similarity=0.321  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeeccCccchH
Q psy10664         25 AVCLQVGLVQYALSKWIEKGYTPLYTPFFMRK   56 (75)
Q Consensus        25 ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~   56 (75)
                      -.+++..+++.+++++.++||.+|-||.|.++
T Consensus       143 ~l~~Rs~i~~~iR~fl~~~gF~EVeTPiL~~s  174 (580)
T 1l0w_A          143 NLRLRHRVIKAIWDFLDREGFVQVETPFLTKS  174 (580)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCEECCCCSSBCC
T ss_pred             HHHHHHHHHHHHHHHHHhCCcEEEeCCEEecC
Confidence            45778899999999999999999999999965

>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A

Probab=88.87  E-value=0.4  Score=35.74  Aligned_cols=33  Identities=9%  Similarity=0.209  Sum_probs=29.1

Q ss_pred             hHHHHHHHHHHHHHHHHHhCCCeeeccCccchH
Q psy10664         24 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRK   56 (75)
Q Consensus        24 ~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~   56 (75)
                      .-.+++..+++.+++++.++||.+|-||.|...
T Consensus       181 ~~~r~Rs~i~~~iR~f~~~~gFlEVeTPiL~~~  213 (504)
T 1e1o_A          181 QTFVVRSKILAAIRQFMVARGFMEVETPMMQVI  213 (504)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTCEECCCCSEESS
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCEEEECCeEEec
Confidence            456788899999999999999999999999843

>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*

Probab=88.87  E-value=0.42  Score=35.50  Aligned_cols=33  Identities=15%  Similarity=0.133  Sum_probs=29.2

Q ss_pred             hHHHHHHHHHHHHHHHHHhCCCeeeccCccchH
Q psy10664         24 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRK   56 (75)
Q Consensus        24 ~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~   56 (75)
                      .-.+++..+++.+++++.++||.+|-||.|...
T Consensus       172 ~~~r~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~  204 (493)
T 3a74_A          172 KTFITRSLIIQSMRRYLDSHGYLEVETPMMHAV  204 (493)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEECCCCSEESS
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeEEEECCeEEec
Confidence            456788899999999999999999999999854

>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}

Probab=88.82  E-value=0.42  Score=36.19  Aligned_cols=34  Identities=9%  Similarity=0.046  Sum_probs=28.2

Q ss_pred             hHHHHHHHHHHHHHHHHHhCCCeeeccCccchHH
Q psy10664         24 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKE   57 (75)
Q Consensus        24 ~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~   57 (75)
                      .-.+++.++++.+++++.++||.+|-||.|....
T Consensus       242 ~~~r~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~  275 (548)
T 3i7f_A          242 AIFRIQSACCGLFREFLTSQKFVEIHTPKLIGCS  275 (548)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEECCCCSBC---
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCEEEeCCEEeccc
Confidence            3467888999999999999999999999998875

>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*

Probab=88.34  E-value=0.49  Score=34.44  Aligned_cols=33  Identities=21%  Similarity=0.285  Sum_probs=25.4

Q ss_pred             hHHHHHHHHHHHHHHHHHhCCCeeeccCccchH
Q psy10664         24 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRK   56 (75)
Q Consensus        24 ~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~   56 (75)
                      .-.+++..+++.+++++.++||.+|-||.+...
T Consensus       123 ~~~~~rs~i~~~ir~~f~~~gF~EV~TPil~~~  155 (422)
T 1n9w_A          123 APLKVQAALVRGFRRYLDRQDFTEIFTPKVVRA  155 (422)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEECCCC-----
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEe
Confidence            456788899999999999999999999999865

>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}

Probab=88.22  E-value=0.45  Score=35.55  Aligned_cols=33  Identities=18%  Similarity=0.242  Sum_probs=29.1

Q ss_pred             hHHHHHHHHHHHHHHHHHhCCCeeeccCccchH
Q psy10664         24 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRK   56 (75)
Q Consensus        24 ~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~   56 (75)
                      .-.+++..+++.+++++.++||.+|-||.|...
T Consensus       174 ~~~r~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~  206 (521)
T 3bju_A          174 QKFIIRSKIITYIRSFLDELGFLEIETPMMNII  206 (521)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEECCCCSEESS
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCEEEeCceeecc
Confidence            456788899999999999999999999999853

>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}

Probab=87.83  E-value=0.5  Score=35.58  Aligned_cols=33  Identities=6%  Similarity=0.010  Sum_probs=29.3

Q ss_pred             hHHHHHHHHHHHHHHHHHhCCCeeeccCccchH
Q psy10664         24 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRK   56 (75)
Q Consensus        24 ~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~   56 (75)
                      +-.+++.++++.+++++.++||.+|-||.|...
T Consensus       202 ~~fr~Rs~i~~~iR~ff~~~gFlEVeTPiL~~~  234 (529)
T 4ex5_A          202 TTFRARTKAIASIRKFMGDADFMEVETPMLHPI  234 (529)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEECCCCSEESS
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCEEEeCCeeecc
Confidence            456788899999999999999999999999843

>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}

Probab=87.60  E-value=0.58  Score=34.10  Aligned_cols=33  Identities=12%  Similarity=0.262  Sum_probs=29.3

Q ss_pred             hHHHHHHHHHHHHHHHHHhCCCeeeccCccchH
Q psy10664         24 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRK   56 (75)
Q Consensus        24 ~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~   56 (75)
                      .-.+++..+++.+++++.++||.+|-||.|...
T Consensus       132 ~~~~~rs~i~~~ir~ff~~~gF~eV~TP~l~~~  164 (429)
T 1wyd_A          132 AVIKIQSLALKAFRETLYKEGFIEIFTPKIIAS  164 (429)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEECCCCSEESS
T ss_pred             HHHHHHHHHHHHHHHHHhhCCCEEEECCEEEee
Confidence            456778899999999999999999999999865

>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A

Probab=86.60  E-value=0.71  Score=33.64  Aligned_cols=33  Identities=12%  Similarity=0.315  Sum_probs=29.2

Q ss_pred             hHHHHHHHHHHHHHHHHHhCCCeeeccCccchH
Q psy10664         24 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRK   56 (75)
Q Consensus        24 ~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~   56 (75)
                      .-.+++..+++.+++++.++||.+|-||.|...
T Consensus       133 ~~~~~rs~i~~~ir~~f~~~gF~eVeTP~l~~~  165 (434)
T 1x54_A          133 AIMKVKETLIMAAREWLLKDGWHEVFPPILVTG  165 (434)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEECCCCSEESC
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCEEEeCcEEEee
Confidence            456788899999999999999999999999865

>4f54_A Uncharacterized protein; PF13590 family protein, DUF4136, structural genomics, joint for structural genomics, JCSG; HET: MLY; 1.60A {Bacteroides thetaiotaomicron}

Probab=82.46  E-value=1.8  Score=28.66  Aligned_cols=49  Identities=10%  Similarity=0.040  Sum_probs=37.5

Q ss_pred             cccccchhccCcceeecch----H---------HHHHHHHHHHHHHHHHhCCCeee---ccCccc
Q psy10664          6 DSEAGAIVAGGRGYFLKGP----A---------VCLQVGLVQYALSKWIEKGYTPL---YTPFFM   54 (75)
Q Consensus         6 d~~~~~k~~G~~~~~l~~~----g---------a~L~~aL~~f~~~~~~~~Gy~~v---~~P~i~   54 (75)
                      |.++.+..+.=+.|.|.+.    +         -..++.|++-+.++|.++||+++   ..|+++
T Consensus        22 DYD~~adFs~YkTya~~~~~~~~~~~~~~~~~~dl~~kRI~~aV~~~L~akG~~~v~~~~~pDll   86 (197)
T 4f54_A           22 NYDXQANFXDFSTFYLADXILVISDSXEPEYLEGEGAEQILAAYTENMEAXGYQPAADXESADLG   86 (197)
T ss_dssp             EECTTCCGGGCCEEEECSSCEEECSSSSCEECCSHHHHHHHHHHHHHHHHTTCEECSSTTTCSEE
T ss_pred             cCCCccCcccceeeeeccccccccccccccccCcHHHHHHHHHHHHHHHhcCceecCCCCCCCEE
Confidence            6677777777787777542    1         25688899999999999999999   567754

>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}

Probab=81.94  E-value=1.4  Score=33.86  Aligned_cols=32  Identities=16%  Similarity=0.263  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHHHHHH-hCCCeeeccCccchH
Q psy10664         25 AVCLQVGLVQYALSKWI-EKGYTPLYTPFFMRK   56 (75)
Q Consensus        25 ga~L~~aL~~f~~~~~~-~~Gy~~v~~P~i~~~   56 (75)
                      -.+++.++++.+++++. ++||.+|-||.|..+
T Consensus       147 ~lr~Rs~i~~~iR~f~~~~~gF~EVeTPiL~~s  179 (617)
T 4ah6_A          147 NLRLRSQMVMKMREYLCNLHGFVDIETPTLFKR  179 (617)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSCCEECCCCSSBCC
T ss_pred             HHHHHHHHHHHHHHHHHhcCCeEEEeCCeeccC
Confidence            45778899999999996 799999999999863

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	75
d1seta2	311	d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS	4e-10
d1nyra4	291	d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (Th	3e-05

>d1seta2 d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Seryl-tRNA synthetase (SerRS)
species: Thermus thermophilus, strain hb27 [TaxId: 274]

 Score = 51.3 bits (122), Expect = 4e-10
 Identities = 14/73 (19%), Positives = 35/73 (47%)

Query: 3   DGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEV 62
           +G      + V+G R Y LKG     ++ L+++A+     +G+ P+  P + R++     
Sbjct: 33  NGWWEPRISQVSGSRSYALKGDLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGT 92

Query: 63  AQLAQFDEELYKM 75
                + ++++ +
Sbjct: 93  GHFPAYRDQVWAI 105

>d1nyra4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Staphylococcus aureus [TaxId: 1280]} Length = 291

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Threonyl-tRNA synthetase (ThrRS)
species: Staphylococcus aureus [TaxId: 1280]

 Score = 37.8 bits (87), Expect = 3e-05
 Identities = 9/61 (14%), Positives = 23/61 (37%)

Query: 14 AGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELY 73
           G            ++  + +Y + K +  GY  +YTP     ++ +       + E+++
Sbjct: 18 VGAGLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMF 77

Query: 74 K 74
           
Sbjct: 78 P 78

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	75
d1seta2	311	Seryl-tRNA synthetase (SerRS) {Thermus thermophilu	99.94
d1nyra4	291	Threonyl-tRNA synthetase (ThrRS) {Staphylococcus a	99.87
d1qf6a4	291	Threonyl-tRNA synthetase (ThrRS) {Escherichia coli	99.78
d1hc7a2	272	Prolyl-tRNA synthetase (ProRS) {Thermus thermophil	99.6
d1nj8a3	268	Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanoc	99.55
d1nj1a3	265	Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanoth	99.53
d1b76a2	331	Glycyl-tRNA synthetase (GlyRS) {Thermus thermophil	99.18
d1atia2	394	Glycyl-tRNA synthetase (GlyRS) {Thermus thermophil	97.24
d1z7ma1	318	ATP phosphoribosyltransferase regulatory subunit H	96.66
d1g5ha2	290	The aaRS-like accessory subunit of mitochondrial p	96.65
d1wu7a2	327	Histidyl-tRNA synthetase (HisRS) {Archaeon Thermop	95.23
d1qe0a2	325	Histidyl-tRNA synthetase (HisRS) {Staphylococcus a	95.06
d1kmma2	322	Histidyl-tRNA synthetase (HisRS) {Escherichia coli	93.95
d1eova2	353	Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (S	93.7
d1n9wa2	304	Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph	93.69
d1c0aa3	346	Aspartyl-tRNA synthetase (AspRS) {Escherichia coli	93.37
d1h4vb2	324	Histidyl-tRNA synthetase (HisRS) {Thermus thermoph	93.01
d1b8aa2	335	Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococ	92.98
d1nnha_	293	Hypothetical protein PF1951 {Archaeon Pyrococcus f	92.24
d1l0wa3	356	Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph	91.99
d1e1oa2	342	Lysyl-tRNA synthetase (LysRS) {Escherichia coli, g	90.41

>d1seta2 d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Seryl-tRNA synthetase (SerRS)
species: Thermus thermophilus, strain hb27 [TaxId: 274]

Probab=99.94  E-value=9.6e-28  Score=169.02  Aligned_cols=73  Identities=18%  Similarity=0.430  Sum_probs=70.7

Q ss_pred             CCcccccccchhccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCCCCccccccC
Q psy10664          2 IDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKM   75 (75)
Q Consensus         2 l~~~d~~~~~k~~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~i   75 (75)
                      +|++| ++|+|+||+|||||+|+||+|++||++|++|.+.++||++|.||+||+++++++|||+|+|+|++|++
T Consensus        33 l~l~d-~~~~k~sG~rfy~l~g~~a~Le~AL~~~~ld~~~~~gy~~v~~P~lv~~~~~~~~G~~p~f~~~~y~~  105 (311)
T d1seta2          33 NGWWE-PRISQVSGSRSYALKGDLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAI  105 (311)
T ss_dssp             HTCBC-TTHHHHHCSSCCCEEHHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHTCTTTTGGGSCBB
T ss_pred             cCCcc-hhhceeecCceEEEECHHHHHHHHHHHHHHHhhhcccceEEeechhhccchhhhcccccccccccccc
Confidence            68999 68999999999999999999999999999999999999999999999999999999999999999975

>d1nyra4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Threonyl-tRNA synthetase (ThrRS)
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.87  E-value=1.4e-23  Score=146.05  Aligned_cols=72  Identities=13%  Similarity=0.317  Sum_probs=68.6

Q ss_pred             CCCcccccccchhccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCCCCccccccC
Q psy10664          1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKM   75 (75)
Q Consensus         1 ~l~~~d~~~~~k~~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~i   75 (75)
                      +|||+||++   .+|+|+|+|+|+|++|+++|++|+++++.++||++|.||.|+++++|++|||||+|+|+||++
T Consensus         8 ~l~lf~~~~---~~g~G~~~~~p~G~~l~~~L~~~~~~~~~~~G~~eV~~P~l~~~~l~~~sG~~~~~~~~~~~~   79 (291)
T d1nyra4           8 ELELFTNSQ---LVGAGLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPP   79 (291)
T ss_dssp             HTTCEEEET---TTEEEEEEECHHHHHHHHHHHHHHHHHHHHTTEEECBCCSEEETHHHHHHTHHHHCTTSSCCC
T ss_pred             hcCCccccc---cccCcceEEehhHHHHHHHHHHHHHHHHHHcCCEEEECccccchhHhhhhccccccccceEEE
Confidence            489999976   689999999999999999999999999999999999999999999999999999999999974

>d1qf6a4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Threonyl-tRNA synthetase (ThrRS)
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=2.3e-20  Score=129.59  Aligned_cols=70  Identities=14%  Similarity=0.247  Sum_probs=67.1

Q ss_pred             CCCcccccccchhccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCCCCcccccc
Q psy10664          1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYK   74 (75)
Q Consensus         1 ~l~~~d~~~~~k~~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~   74 (75)
                      +|||++|++    +|+|+|+|+|+|++|.++|++|+++.+.+.||++|.||.|+++++|++||||++|.++||.
T Consensus         9 ~l~lf~~~~----~~~G~~~~lP~G~~l~~~L~~~i~e~~~~~G~~eV~~P~L~~~~l~~~sG~~~~~~~~~~~   78 (291)
T d1qf6a4           9 QLDLYHMQE----EAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFT   78 (291)
T ss_dssp             HTTCEECCT----TSTTCCEECHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHHSHHHHHGGGCEE
T ss_pred             hCCCccccC----CCCcceEEccCHHHHHHHHHHHHHHHHHHcCCEEEEcccccchhHHhhhchhhhccchhcc
Confidence            489999988    4899999999999999999999999999999999999999999999999999999999986

>d1hc7a2 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Prolyl-tRNA synthetase (ProRS)
species: Thermus thermophilus [TaxId: 274]

Probab=99.60  E-value=1e-16  Score=107.25  Aligned_cols=68  Identities=18%  Similarity=0.212  Sum_probs=54.7

Q ss_pred             CCcccccccchhccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcC-CCCCCcccccc
Q psy10664          2 IDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVA-QLAQFDEELYK   74 (75)
Q Consensus         2 l~~~d~~~~~k~~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG-~~~~~~e~~y~   74 (75)
                      .+++|.+.   +  +|+|+|+|.|++|.++|++|+++++.+.||++|.||.|+++++|++|| |+..|+|+||.
T Consensus        21 ~~l~d~~~---~--~G~~~~lP~G~~l~~~l~~~~~~~~~~~G~~eV~~P~l~~~~l~~~sg~~~~~~~~~m~~   89 (272)
T d1hc7a2          21 AELADYGP---V--RGTIVVRPYGYAIWENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAV   89 (272)
T ss_dssp             TTSEEECS---S--TTCEEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEESTTC---------CCTTCEE
T ss_pred             cCCcccCC---C--CCeEEECccHHHHHHHHHHHHHHHHHHcCCeEEeeccccchHHhhhcccchhhcccceee
Confidence            57888654   3  479999999999999999999999999999999999999999999998 67779999985

>d1nj8a3 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Prolyl-tRNA synthetase (ProRS)
species: Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]

Probab=99.55  E-value=1.7e-15  Score=103.07  Aligned_cols=70  Identities=11%  Similarity=0.090  Sum_probs=61.9

Q ss_pred             CCCcccccccchhccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcC-CCCCCcccccc
Q psy10664          1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVA-QLAQFDEELYK   74 (75)
Q Consensus         1 ~l~~~d~~~~~k~~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG-~~~~~~e~~y~   74 (75)
                      |.||+|+.+.+    +|+++|+|.|+++.++|++++++.+.+.||++|.||.|+++++|++|| |++.++++||.
T Consensus        14 k~~L~d~~~~v----~G~~~~lP~G~~i~~~i~~~i~~~~~~~G~~ev~~P~l~~~~l~~ks~~~~~~~~~~~~~   84 (268)
T d1nj8a3          14 KAEIYDVRYPI----KGCGVYLPYGFKIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYW   84 (268)
T ss_dssp             HTSSCBCCSTT----SSCCBBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHCSSSGGGGGGCEE
T ss_pred             HcCCcccCCCC----CccEEECccHHHHHHHHHHHHHHHHHHcCCeEEeehhhhhhHhhhccCCCccccccceeE
Confidence            46899987753    589999999999999999999999999999999999999999999875 56677888874

>d1nj1a3 d.104.1.1 (A:19-283) Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Prolyl-tRNA synthetase (ProRS)
species: Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]

Probab=99.53  E-value=5.7e-16  Score=104.59  Aligned_cols=70  Identities=10%  Similarity=0.172  Sum_probs=61.1

Q ss_pred             CCCcccccccchhccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchH-HHHHHcCCCCCCccccccC
Q psy10664          1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRK-EVMQEVAQLAQFDEELYKM   75 (75)
Q Consensus         1 ~l~~~d~~~~~k~~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~-~~~~~sG~~~~~~e~~y~i   75 (75)
                      |.+++|..+.    .+|+++|+|+|+++.++|++|+.+ ..++||++|.||.++++ ++|+.||||++|+|+||++
T Consensus        12 k~~lid~~~~----~~G~~~~lP~G~~i~~~i~~~~~~-~~~~G~~ev~~P~l~~~~~l~~~sgh~~~~~~e~f~~   82 (265)
T d1nj1a3          12 EAEIIDQRYP----VKGMHVWMPHGFMIRKNTLKILRR-ILDRDHEEVLFPLLVPEDELAKEAIHVKGFEDEVYWV   82 (265)
T ss_dssp             HTTCEECCCS----STTCCEECHHHHHHHHHHHHHHHH-HHTTTCEECCCCSEEEHHHHTTSHHHHHHTTTTCCEE
T ss_pred             HcCCcccCCC----CCceEEEcccHHHHHHHHHHHHHH-HHHhcCceehhhhhhhhhhhhhcccccccccccceee
Confidence            3688998885    368999999999999999999865 46789999999998866 5899999999999999863

>d1b76a2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Glycyl-tRNA synthetase (GlyRS)
species: Thermus thermophilus [TaxId: 274]

Probab=99.18  E-value=5.5e-12  Score=87.83  Aligned_cols=63  Identities=16%  Similarity=0.120  Sum_probs=57.9

Q ss_pred             hhcc--CcceeecchHHHHHHHHHHHHHHHHH--hCCCeeeccCccchHHHHHHcCCCCCCcccccc
Q psy10664         12 IVAG--GRGYFLKGPAVCLQVGLVQYALSKWI--EKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYK   74 (75)
Q Consensus        12 k~~G--~~~~~l~~~ga~L~~aL~~f~~~~~~--~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~   74 (75)
                      .+-|  +|+|-|.|.|+.|.+.|++++++...  +.||.+|.||.|.++++|+.|||+.+|.|+||.
T Consensus        23 ~iy~g~~G~y~ygP~G~~l~~~i~~~wr~~~v~~~~~~~ev~tp~i~~~~lw~~SGH~~~f~d~m~~   89 (331)
T d1b76a2          23 EIYGGLQGVYDYGPLGVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRLVLHYSGHEATFADPMVD   89 (331)
T ss_dssp             GGGSCCTTCEEECHHHHHHHHHHHHHHHHHHTTSCSSEEEEBCCSEEEHHHHHHTSHHHHCEEEECB
T ss_pred             hhcCCceeEeccCCcHHHHHHHHHHHHHHHHHhccCCeEEEeccccCChHHhccCccccccCCceee
Confidence            3444  89999999999999999999999864  679999999999999999999999999999985

>d1atia2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Glycyl-tRNA synthetase (GlyRS)
species: Thermus thermophilus [TaxId: 274]

Probab=97.24  E-value=6.1e-05  Score=53.42  Aligned_cols=57  Identities=16%  Similarity=0.108  Sum_probs=50.0

Q ss_pred             CcceeecchHHHHHHHHHHHHHHHHH--hCCCeeeccCccchHHHHHHcCCCCCCcccc
Q psy10664         16 GRGYFLKGPAVCLQVGLVQYALSKWI--EKGYTPLYTPFFMRKEVMQEVAQLAQFDEEL   72 (75)
Q Consensus        16 ~~~~~l~~~ga~L~~aL~~f~~~~~~--~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~   72 (75)
                      +|+|=+-|-|+.|.+.|++.+.+...  +.+..+|-+|.|+++++|+.|||..+|.|-|
T Consensus        29 aG~yDyGPlG~~LK~Ni~~~Ww~~fv~~~e~~~~id~~ii~p~~V~kASGHv~~F~D~m   87 (394)
T d1atia2          29 QGVYDYGPLGVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRLVLHYSGHEATFADPM   87 (394)
T ss_dssp             TTCEEECHHHHHHHHHHHHHHHHHHTTSCSSEEEEBCCSEEETTHHHHTSHHHHCEEEE
T ss_pred             ccccCcCccHHHHHHHHHHHHHHHHhhccCCEEEecccccCCHHHhhhcCCCCCCcccc
Confidence            56888999999999999998877654  4578889999999999999999999998754

>d1z7ma1 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase regulatory subunit HisZ {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: ATP phosphoribosyltransferase regulatory subunit HisZ
species: Lactococcus lactis [TaxId: 1358]

Probab=96.66  E-value=0.0012  Score=43.68  Aligned_cols=49  Identities=12%  Similarity=0.146  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCC-C-Ccccccc
Q psy10664         26 VCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLA-Q-FDEELYK   74 (75)
Q Consensus        26 a~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~-~-~~e~~y~   74 (75)
                      +.-.+.|++-+++...++||++|.||.+=..+++.....-. . .+++||+
T Consensus        15 ~~~~~~i~~~l~~~f~~~Gy~~I~tP~~E~~d~~~~~~~~~~~~~~~~~~~   65 (318)
T d1z7ma1          15 VKSLRQIEGRLRKLFSLKNYQEVMPPSFEYTQLYTALESNGKTFNQEKMFQ   65 (318)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHCSSSCCCTTSCCE
T ss_pred             HHHHHHHHHHHHHHHHHcCCEEEECCccchHHHhhccCCCcccccccceeE
Confidence            67788899999999999999999999999999987643322 2 2445664

>d1g5ha2 d.104.1.1 (A:41-330) The aaRS-like accessory subunit of mitochondrial polymerase gamma, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: The aaRS-like accessory subunit of mitochondrial polymerase gamma, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.65  E-value=0.00015  Score=48.95  Aligned_cols=56  Identities=11%  Similarity=-0.105  Sum_probs=47.2

Q ss_pred             Ccce-eecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCCCCcccc
Q psy10664         16 GRGY-FLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEEL   72 (75)
Q Consensus        16 ~~~~-~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~   72 (75)
                      +|++ -|-|.|+.|.+.|++++++.. ...+..|.+|+++..++|+.|||+..|.+.+
T Consensus        27 ~g~~~dyGP~G~~Lk~ni~~~w~~~~-v~~~~~v~~~d~~~~~~~~~sgh~~~~~~~~   83 (290)
T d1g5ha2          27 SGCHARFGPLGVELRKNLASQWWSSM-VVFREQVFAVDSLHQEPGSSQPRDSAFRLVS   83 (290)
T ss_dssp             HCCSCCBCHHHHHHHHHHHHHHHHHH-TTTCTTEEECCCCSEECCCCSSCCCCCEEEC
T ss_pred             cccccccCCcHHHHHHHHHHHHHHHH-HhccCceeeccccccccCCCccccchhhhcc
Confidence            3444 789999999999999999764 4455689999999999999999999987654

>d1wu7a2 d.104.1.1 (A:3-329) Histidyl-tRNA synthetase (HisRS) {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Histidyl-tRNA synthetase (HisRS)
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=95.23  E-value=0.014  Score=38.57  Aligned_cols=58  Identities=10%  Similarity=0.099  Sum_probs=45.5

Q ss_pred             hccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHH-cCCCCCCcccccc
Q psy10664         13 VAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQE-VAQLAQFDEELYK   74 (75)
Q Consensus        13 ~~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~-sG~~~~~~e~~y~   74 (75)
                      +.|.+-  +.|+=+...+.+++-+.+...++||++|.||.+=..+++.. +|.  .-+++||+
T Consensus         7 ~~G~~D--~~p~~~~~~~~i~~~l~~~f~~~Gy~~I~tP~lE~~d~~~~~~g~--~~~~~~~~   65 (327)
T d1wu7a2           7 IRGFRD--FYPEDMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSGE--ELLQQTYS   65 (327)
T ss_dssp             CTTCCC--BCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETHHHHTTSCT--TGGGGSCE
T ss_pred             CCCCcc--CCHHHHHHHHHHHHHHHHHHHHcCCeEeECCccchHhhccccCch--hHHHHHhh
Confidence            345444  46889999999999999999999999999999999998764 342  34456664

>d1qe0a2 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisRS) {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Histidyl-tRNA synthetase (HisRS)
species: Staphylococcus aureus [TaxId: 1280]

Probab=95.06  E-value=0.012  Score=38.75  Aligned_cols=45  Identities=9%  Similarity=-0.059  Sum_probs=40.0

Q ss_pred             cceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHH
Q psy10664         17 RGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQE   61 (75)
Q Consensus        17 ~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~   61 (75)
                      |+--+.|+-+...+.|.+-+++...++||++|.||.+=..+++..
T Consensus         7 G~rD~lp~~~~~~~~i~~~l~~~f~~~Gy~~I~tP~lE~~d~l~~   51 (325)
T d1qe0a2           7 GTQDILPEDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFAR   51 (325)
T ss_dssp             TCCCBCHHHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHCC
T ss_pred             CCcCCCHHHHHHHHHHHHHHHHHHHHcCCeEeeCcccccHHHhcc
Confidence            455677889999999999999999999999999999999888754

>d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Histidyl-tRNA synthetase (HisRS)
species: Escherichia coli [TaxId: 562]

Probab=93.95  E-value=0.043  Score=35.88  Aligned_cols=45  Identities=7%  Similarity=-0.017  Sum_probs=39.5

Q ss_pred             cceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHH
Q psy10664         17 RGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQE   61 (75)
Q Consensus        17 ~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~   61 (75)
                      |+-=+.|.=+...+.+++-+.+...++||++|.||.+=..+++..
T Consensus         7 G~~D~lp~~~~~~~~i~~~l~~~f~~~Gy~~I~tP~lE~~d~~~~   51 (322)
T d1kmma2           7 GMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKR   51 (322)
T ss_dssp             TCCCBCHHHHHHHHHHHHHHHHHHHTTTCEECBCCSEEEHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHCCCeEeECcccccHHHhhc
Confidence            445577888999999999999999999999999999999988653

>d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Aspartyl-tRNA synthetase (AspRS)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.70  E-value=0.029  Score=37.67  Aligned_cols=33  Identities=18%  Similarity=0.237  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeeccCccchHH
Q psy10664         25 AVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKE   57 (75)
Q Consensus        25 ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~   57 (75)
                      --+++..+++.+++++.++||.+|-||.|....
T Consensus        43 ilr~Rs~i~~~iR~ff~~~gflEV~TPiL~~~~   75 (353)
T d1eova2          43 IFRIQAGVCELFREYLATKKFTEVHTPKLLGAP   75 (353)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC
T ss_pred             HHHHHHHHHHHHHHHHHHCCCEEEECCccCCCC
Confidence            456788899999999999999999999997653

>d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Aspartyl-tRNA synthetase (AspRS)
species: Thermus thermophilus, AspRS-2 [TaxId: 274]

Probab=93.69  E-value=0.03  Score=36.80  Aligned_cols=34  Identities=21%  Similarity=0.269  Sum_probs=25.7

Q ss_pred             hHHHHHHHHHHHHHHHHHhCCCeeeccCccchHH
Q psy10664         24 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKE   57 (75)
Q Consensus        24 ~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~   57 (75)
                      +-.+++..+++.++++..++||.+|.||.+++..
T Consensus        13 ~~l~~Rs~i~~~iR~ff~~~gf~Ev~TP~l~~~~   46 (304)
T d1n9wa2          13 APLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAG   46 (304)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEECCCC------
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCEEEECCccCCCC
Confidence            3567889999999999999999999999997763

>d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Aspartyl-tRNA synthetase (AspRS)
species: Escherichia coli [TaxId: 562]

Probab=93.37  E-value=0.037  Score=37.27  Aligned_cols=33  Identities=9%  Similarity=0.190  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeeccCccchHH
Q psy10664         25 AVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKE   57 (75)
Q Consensus        25 ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~   57 (75)
                      -.+++.++++.+++++.++||.+|.||.|....
T Consensus        31 ilr~Rs~i~~~iR~ff~~~gFlEV~TPiL~~~~   63 (346)
T d1c0aa3          31 RLKTRAKITSLVRRFMDDHGFLDIETPMLTKAT   63 (346)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCEECCCCSSBCCC
T ss_pred             HHHHHHHHHHHHHHHHHHCCCEEEECCccCCCC
Confidence            346889999999999999999999999997644

>d1h4vb2 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Histidyl-tRNA synthetase (HisRS)
species: Thermus thermophilus [TaxId: 274]

Probab=93.01  E-value=0.037  Score=36.38  Aligned_cols=45  Identities=22%  Similarity=0.222  Sum_probs=39.3

Q ss_pred             cceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHH
Q psy10664         17 RGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQE   61 (75)
Q Consensus        17 ~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~   61 (75)
                      |+-=+.|+-+..++.+.+-+.+...++||++|.||.+=..+++..
T Consensus         7 G~rD~~p~~~~~~~~i~~~l~~~f~~~Gy~~I~tP~lE~~d~l~~   51 (324)
T d1h4vb2           7 GTKDLFGKELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEK   51 (324)
T ss_dssp             TCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEGGGGCC
T ss_pred             CCcCCCHHHHHHHHHHHHHHHHHHHHcCCeEeeCCccccHHHhhc
Confidence            445567999999999999999999999999999999988887653

>d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Aspartyl-tRNA synthetase (AspRS)
species: Archaeon Pyrococcus kodakaraensis [TaxId: 311400]

Probab=92.98  E-value=0.045  Score=36.34  Aligned_cols=33  Identities=12%  Similarity=0.237  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeeccCccchHH
Q psy10664         25 AVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKE   57 (75)
Q Consensus        25 ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~   57 (75)
                      ..+++.++++.++++..++||.+|.||.+....
T Consensus        33 ~l~~Rs~i~~~iR~ff~~~gflEV~TPil~~~~   65 (335)
T d1b8aa2          33 IFKIRSSVFKAVRDFFHENGFIEIHTPKIIATA   65 (335)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCEECCCCSEESCC
T ss_pred             HHHHHHHHHHHHHHHHHHCCCEEEECCccCccC
Confidence            567899999999999999999999999986553

>d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Hypothetical protein PF1951
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=92.24  E-value=0.071  Score=35.29  Aligned_cols=31  Identities=16%  Similarity=0.424  Sum_probs=27.4

Q ss_pred             hHHHHHHHHHHHHHHHHHhCCCeeeccCccc
Q psy10664         24 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFM   54 (75)
Q Consensus        24 ~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~   54 (75)
                      +-.+++..|++.++++..++||.+|.||.+.
T Consensus        12 ~il~~Rs~i~~~iR~ff~~~gf~EV~tPil~   42 (293)
T d1nnha_          12 PTLDIQTKILEYMTDFFVKEGFKWLLPVIIS   42 (293)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEEECCCCEE
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCEEEcCCccc
Confidence            3567889999999999999999999999764

>d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Aspartyl-tRNA synthetase (AspRS)
species: Thermus thermophilus, AspRS-1 [TaxId: 274]

Probab=91.99  E-value=0.074  Score=35.92  Aligned_cols=33  Identities=15%  Similarity=0.307  Sum_probs=29.4

Q ss_pred             hHHHHHHHHHHHHHHHHHhCCCeeeccCccchH
Q psy10664         24 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRK   56 (75)
Q Consensus        24 ~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~   56 (75)
                      .-.+++.++++.++++..++||.+|.||.|...
T Consensus        38 ~ilr~Rs~i~~~iR~ff~~~gfiEV~TP~L~~~   70 (356)
T d1l0wa3          38 ENLRLRHRVIKAIWDFLDREGFVQVETPFLTKS   70 (356)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEECCCCSSBCC
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCEEEECCccccC
Confidence            356788999999999999999999999999764

>d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Lysyl-tRNA synthetase (LysRS)
species: Escherichia coli, gene lysU [TaxId: 562]

Probab=90.41  E-value=0.12  Score=34.31  Aligned_cols=30  Identities=10%  Similarity=0.277  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeeccCccc
Q psy10664         25 AVCLQVGLVQYALSKWIEKGYTPLYTPFFM   54 (75)
Q Consensus        25 ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~   54 (75)
                      -.+++..+.+-+++++.++||.+|.||.|.
T Consensus        22 ~~r~Rs~i~~~iR~ff~~~gFiEV~TPil~   51 (342)
T d1e1oa2          22 TFVVRSKILAAIRQFMVARGFMEVETPMMQ   51 (342)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTCEECCCCSEE
T ss_pred             HHHHHHHHHHHHHHHHHHCCCEEEECCCcc
Confidence            467889999999999999999999999874