Psyllid ID: psy10674

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------14
Protein Sequence
YTLAENKTFHVKHFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYIPVTESRPGQDSPGSH
Secondary Structure (PSIPRED)
cEEEccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccEEEEccccccHHHHHHHcccccccccccccccccEEEEcccccccccccccccccccccccEEEcccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccEEEHHcccccccccEEEEEccccccccccccccEEEHHHHHHccccEEEEccccccccHHHHHHHccccccHcccEEEccccEEEcccccccccEEEccccccccccccEEcccccccccccccc
Coil and Loop (DISEMBL)
ytlaenktfhvkhfccyecdkkvqfenytgkitqsqesevlwhpqcfvcstCDELLVDLMYFhykgnvyclrdyatmldiprchacdelifvneytlaenktfhvkhfccyecdkelcnqsyipvtesrpgqdspgsh
Flexible Loop (DISEMBL)
ytlaenktfhvkhfCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSyipvtesrpgqdspgsh
Low Complexity Region (SEG)
YTLAENKTFHVKHFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYIPVTESRPGQDSPGSH
Disordered region (IsUnstruct)
******KTFHVKHFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYIPV*************
Disordered Region (DISOPRED)
YTLAENKTFHVKHFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYIPVTESRP*Q******
Disordered Region (DISEMBL)
YTLAENKTFHVKHFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYIPVT************
Disordered Region (DISPRO)
*T**ENKTFHVKHFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYIPV*************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
YTLAENKTFHVKHFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYIPVTESRPGQDSPGSH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	138	2.2.26 [Sep-21-2011]
Q90Z06	835	Prickle-like protein 1-A	N/A	N/A	0.847	0.140	0.466	4e-25
Q90WV2	832	Prickle-like protein 1-B	N/A	N/A	0.847	0.140	0.466	5e-25
Q2QLB2	421	Testin OS=Equus caballus	yes	N/A	0.869	0.285	0.472	1e-24
Q07E27	421	Testin OS=Mustela putoriu	N/A	N/A	0.862	0.282	0.467	1e-24
Q7Z3G6	844	Prickle-like protein 2 OS	yes	N/A	0.644	0.105	0.560	2e-24
A1Z6W3	1299	Protein prickle OS=Drosop	no	N/A	0.630	0.066	0.550	2e-24
P47226	423	Testin OS=Mus musculus GN	yes	N/A	0.623	0.203	0.574	2e-24
Q2IBC3	421	Testin OS=Rhinolophus fer	N/A	N/A	0.623	0.204	0.574	3e-24
Q28FG2	833	Prickle-like protein 1 OS	yes	N/A	0.847	0.140	0.458	3e-24
A0M8U6	421	Testin OS=Canis familiari	yes	N/A	0.862	0.282	0.459	5e-24

>sp|Q90Z06|PRI1A_XENLA Prickle-like protein 1-A OS=Xenopus laevis GN=prickle1-a PE=1 SV=1

 Score =  113 bits (282), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 56/120 (46%), Positives = 78/120 (65%), Gaps = 3/120 (2%)

Query: 11  VKHFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYC 70
           V H  C +C +K+        ++++    V WHP CFVCSTC+ELLVDL+YF+  G ++C
Sbjct: 121 VMHATCEKCGEKINGGEVAIFVSRAGPG-VCWHPSCFVCSTCNELLVDLIYFYQDGKIHC 179

Query: 71  LRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYIPVTESRP 130
            R +A +L  PRC ACDE+IF +E T AE + +H+ HFCCYEC+  L  Q YI + + RP
Sbjct: 180 GRHHAELLK-PRCSACDEIIFADECTEAEGRHWHMNHFCCYECETVLGGQRYI-MKDGRP 237

Acts in a planar cell polarity (PCP) complex; polarization along the apical/basal axis of epithelial cells. Regulates the polarized assembly of fibronectrin on the surface of the mesoderm during gastrulation. Essential for gastrulation cell movements, cooperating with dvl2/dsh to activate jnk. Acts together with tes to control axial elongation.
Xenopus laevis (taxid: 8355)

>sp|Q90WV2|PRI1B_XENLA Prickle-like protein 1-B OS=Xenopus laevis GN=prickle1-b PE=2 SV=2

 Score =  112 bits (281), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 56/120 (46%), Positives = 78/120 (65%), Gaps = 3/120 (2%)

Query: 11  VKHFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYC 70
           V H  C +C +K+        ++++    V WHP CFVCSTC+ELLVDL+YF+  G ++C
Sbjct: 121 VMHAMCEKCGEKINGGEIAIFVSRAGPG-VCWHPSCFVCSTCNELLVDLIYFYQDGKIHC 179

Query: 71  LRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYIPVTESRP 130
            R +A +L  PRC ACDE+IF +E T AE + +H+ HFCCYEC+  L  Q YI + + RP
Sbjct: 180 GRHHAELLK-PRCSACDEIIFADECTEAEGRHWHMNHFCCYECETVLGGQRYI-MKDGRP 237

Acts in a planar cell polarity (PCP) complex; polarization along the apical/basal axis of epithelial cells. Regulates the polarized assembly of fibronectrin on the surface of the mesoderm during gastrulation. Essential for gastrulation cell movements, cooperating with dvl2/dsh to activate jnk. Acts together with tes to control axial elongation.

Xenopus laevis (taxid: 8355)

>sp|Q2QLB2|TES_HORSE Testin OS=Equus caballus GN=TES PE=3 SV=1

 Score =  111 bits (278), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 59/125 (47%), Positives = 75/125 (60%), Gaps = 5/125 (4%)

Query: 3   LAENKTFHVKHFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYF 62
           LAENK      +CC    K+     Y  +    +    LWHP CFVCSTC ELLVD++YF
Sbjct: 226 LAENKRTQYSCYCCNLSMKEGDPAIYAERAGYDK----LWHPACFVCSTCHELLVDMIYF 281

Query: 63  HYKGNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSY 122
              G +YC R Y    + PRC  CDELIF NEYT AEN+ +H+KHFCC++CD  L  + Y
Sbjct: 282 WKNGKLYCGRHYCDS-EKPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIY 340

Query: 123 IPVTE 127
           + V +
Sbjct: 341 VMVND 345

Scaffold protein that may play a role in cell adhesion, cell spreading and in the reorganization of the actin cytoskeleton. Plays a role in the regulation of cell proliferation. May act as a tumor suppressor.

Equus caballus (taxid: 9796)

>sp|Q07E27|TES_MUSPF Testin OS=Mustela putorius furo GN=TES PE=3 SV=1

 Score =  111 bits (278), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 58/124 (46%), Positives = 76/124 (61%), Gaps = 5/124 (4%)

Query: 4   AENKTFHVKHFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFH 63
           AE+K      +CC +  K+     Y  +    +    LWHP CFVCSTC ELLVD++YF 
Sbjct: 227 AEHKKTQYSCYCCKQSMKEGDPAIYAERAGYDK----LWHPACFVCSTCHELLVDMIYFW 282

Query: 64  YKGNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYI 123
            KG +YC R Y    + PRC  CDELIF NEYT AEN+ +H+KHFCC++CD  L  + Y+
Sbjct: 283 KKGKLYCGRHYCDS-EKPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDNILAGEIYV 341

Query: 124 PVTE 127
            V +
Sbjct: 342 MVND 345

Scaffold protein that may play a role in cell adhesion, cell spreading and in the reorganization of the actin cytoskeleton. Plays a role in the regulation of cell proliferation. May act as a tumor suppressor.

Mustela putorius furo (taxid: 9669)

>sp|Q7Z3G6|PRIC2_HUMAN Prickle-like protein 2 OS=Homo sapiens GN=PRICKLE2 PE=1 SV=2

 Score =  111 bits (277), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 51/91 (56%), Positives = 65/91 (71%), Gaps = 2/91 (2%)

Query: 40  VLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELIFVNEYTLAE 99
           V WHP CFVC+ C+ELLVDL+YF+  G +YC R +A  L  PRC ACDE+IF +E T AE
Sbjct: 153 VCWHPPCFVCTVCNELLVDLIYFYQDGKIYCGRHHAECLK-PRCAACDEIIFADECTEAE 211

Query: 100 NKTFHVKHFCCYECDKELCNQSYIPVTESRP 130
            + +H+KHFCC+EC+  L  Q YI + E RP
Sbjct: 212 GRHWHMKHFCCFECETVLGGQRYI-MKEGRP 241

Homo sapiens (taxid: 9606)

>sp|A1Z6W3|PRIC1_DROME Protein prickle OS=Drosophila melanogaster GN=pk PE=1 SV=1

 Score =  110 bits (276), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 49/89 (55%), Positives = 61/89 (68%), Gaps = 2/89 (2%)

Query: 42  WHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENK 101
           WHP CF CS C ELLVDL+YFH  G +YC R +A  L  PRC ACDE+I  +E T AE +
Sbjct: 649 WHPACFACSVCRELLVDLIYFHRDGRMYCGRHHAETLK-PRCSACDEIILADECTEAEGR 707

Query: 102 TFHVKHFCCYECDKELCNQSYIPVTESRP 130
            +H+ HF C+ECDK+L  Q YI + E +P
Sbjct: 708 AWHMNHFACHECDKQLGGQRYI-MREGKP 735

Acts in a planar cell polarity (PCP) complex; polarization along the apical/basal axis of epithelial cells. Correct expression of the alternative isoforms is required for PCP signaling in imaginal disks. PCP signaling in the wing disk requires the receptor fz and the cytoplasmic proteins dsh and pk. These act in a feedback loop leading to activation of the jnk cascade and subsequent polarized arrangement of hairs and bristles. Dgo and pk compete with one another for dsh binding, thereby modulating fz dsh activity and ensuring tight control over fz PCP signaling. Vang, stan and pk function together to regulate the establishment of tissue polarity in the adult eye.

Drosophila melanogaster (taxid: 7227)

>sp|P47226|TES_MOUSE Testin OS=Mus musculus GN=Tes PE=1 SV=1

 Score =  110 bits (276), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 50/87 (57%), Positives = 63/87 (72%), Gaps = 1/87 (1%)

Query: 41  LWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELIFVNEYTLAEN 100
           LWHP CF+CSTC ELLVD++YF   G +YC R Y    + PRC  CDELIF NEYT AEN
Sbjct: 262 LWHPACFICSTCGELLVDMIYFWKNGKLYCGRHYCDS-EKPRCAGCDELIFSNEYTQAEN 320

Query: 101 KTFHVKHFCCYECDKELCNQSYIPVTE 127
           + +H+KHFCC++CD  L  + Y+ VT+
Sbjct: 321 QNWHLKHFCCFDCDHILAGKIYVMVTD 347

Scaffold protein that may play a role in cell adhesion, cell spreading and in the reorganization of the actin cytoskeleton. Plays a role in the regulation of cell proliferation. May act as a tumor suppressor.

Mus musculus (taxid: 10090)

>sp|Q2IBC3|TES_RHIFE Testin OS=Rhinolophus ferrumequinum GN=TES PE=3 SV=1

 Score =  110 bits (274), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 50/87 (57%), Positives = 63/87 (72%), Gaps = 1/87 (1%)

Query: 41  LWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELIFVNEYTLAEN 100
           LWHP CFVCSTC+ELLVD++YF   G +YC R Y    + PRC  CDELIF NEYT AEN
Sbjct: 260 LWHPACFVCSTCEELLVDMIYFWKNGKLYCGRHYCDS-EKPRCAGCDELIFSNEYTQAEN 318

Query: 101 KTFHVKHFCCYECDKELCNQSYIPVTE 127
           + +H+KHFCC++CD  L  + Y+ V +
Sbjct: 319 QNWHLKHFCCFDCDNILAGEIYVMVDD 345

Scaffold protein that may play a role in cell adhesion, cell spreading and in the reorganization of the actin cytoskeleton. Plays a role in the regulation of cell proliferation. May act as a tumor suppressor.

Rhinolophus ferrumequinum (taxid: 59479)

>sp|Q28FG2|PRIC1_XENTR Prickle-like protein 1 OS=Xenopus tropicalis GN=prickle1 PE=2 SV=1

 Score =  110 bits (274), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 55/120 (45%), Positives = 77/120 (64%), Gaps = 3/120 (2%)

Query: 11  VKHFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYC 70
           V H  C +C +K+        ++++    V WHP CFVCSTC+ELLVDL+YF+  G ++C
Sbjct: 121 VMHAMCEKCGEKINGGEIAIFVSRAGPG-VCWHPSCFVCSTCNELLVDLIYFYQDGKIHC 179

Query: 71  LRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYIPVTESRP 130
            R +A +L  PRC ACDE+IF +E T AE + +H+ HF CYEC+  L  Q YI + + RP
Sbjct: 180 GRHHAELLK-PRCSACDEIIFADECTEAEGRHWHMNHFSCYECETVLGGQRYI-MKDGRP 237

Acts in a planar cell polarity (PCP) complex; polarization along the apical/basal axis of epithelial cells. Regulates the polarized assembly of fibronectrin on the surface of the mesoderm during gastrulation. Essential for gastrulation cell movements, cooperating with dvl2/dsh to activate jnk. Acts together with tes to control axial elongation.

Xenopus tropicalis (taxid: 8364)

>sp|A0M8U6|TES_CANFA Testin OS=Canis familiaris GN=TES PE=3 SV=1

 Score =  109 bits (273), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 57/124 (45%), Positives = 75/124 (60%), Gaps = 5/124 (4%)

Query: 4   AENKTFHVKHFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFH 63
           AE+K      +CC +  K+     Y  +    +    LWHP CFVCSTC ELLVD++YF 
Sbjct: 227 AEHKRTQYSCYCCKQSMKEGDPAIYAERAGYDK----LWHPACFVCSTCHELLVDMIYFW 282

Query: 64  YKGNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYI 123
             G +YC R Y    + PRC  CDELIF NEYT AEN+ +H+KHFCC++CD  L  + Y+
Sbjct: 283 KNGKLYCGRHYCDS-EKPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDNILAGEIYV 341

Query: 124 PVTE 127
            V +
Sbjct: 342 MVND 345

Scaffold protein that may play a role in cell adhesion, cell spreading and in the reorganization of the actin cytoskeleton. Plays a role in the regulation of cell proliferation. May act as a tumor suppressor.

Canis familiaris (taxid: 9615)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	138
194755335	817	GF11783 [Drosophila ananassae] gi|190621	0.818	0.138	0.535	6e-31
170043587	817	testin [Culex quinquefasciatus] gi|16786	0.818	0.138	0.530	2e-30
195027275	831	GH20485 [Drosophila grimshawi] gi|193902	0.847	0.140	0.525	2e-30
328724369	559	PREDICTED: testin-like [Acyrthosiphon pi	0.818	0.202	0.547	4e-30
383852121	799	PREDICTED: uncharacterized protein LOC10	0.804	0.138	0.530	6e-30
195455875	807	GK23303 [Drosophila willistoni] gi|19417	0.811	0.138	0.539	2e-29
195123843	836	GI21028 [Drosophila mojavensis] gi|19391	0.847	0.139	0.508	3e-29
357627628	703	testin [Danaus plexippus]	0.855	0.167	0.478	6e-29
195150369	816	GL10662 [Drosophila persimilis] gi|19410	0.326	0.055	0.622	6e-29
198457161	816	GA19661 [Drosophila pseudoobscura pseudo	0.326	0.055	0.622	6e-29

>gi|194755335|ref|XP_001959947.1| GF11783 [Drosophila ananassae] gi|190621245|gb|EDV36769.1| GF11783 [Drosophila ananassae]

 Score =  138 bits (348), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 61/114 (53%), Positives = 74/114 (64%), Gaps = 1/114 (0%)

Query: 11  VKHFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYC 70
           V    C +C + + F     K  ++ + E+ WHP CF C TC ELL DL+YF ++G VYC
Sbjct: 623 VSSILCCDCSQPIAFGEVAVKADRAGK-EIAWHPNCFKCHTCRELLADLVYFFHQGQVYC 681

Query: 71  LRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYIP 124
            RD A  L IPRC ACDELIF  EYT AE  TFH+KHFCCY+CD+ L  Q YIP
Sbjct: 682 GRDLAIKLKIPRCRACDELIFTKEYTAAEGATFHIKHFCCYQCDEPLAGQQYIP 735

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170043587|ref|XP_001849464.1| testin [Culex quinquefasciatus] gi|167866870|gb|EDS30253.1| testin [Culex quinquefasciatus]

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 61/115 (53%), Positives = 72/115 (62%), Gaps = 2/115 (1%)

Query: 16  CYECDKKVQFENYTGKITQSQES--EVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRD 73
           C  C + +       K  ++++S     WHPQCF C  C ELL DL+YF++ G VYC RD
Sbjct: 625 CSGCQQSINVGEVAVKAERAEKSGKSAAWHPQCFKCEDCKELLADLVYFYHGGKVYCARD 684

Query: 74  YATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYIPVTES 128
            A ML IPRC ACDELIF  EYT AE  TFH+KHFCCY CD  L  Q YIP  +S
Sbjct: 685 LANMLKIPRCSACDELIFTKEYTAAEGSTFHIKHFCCYHCDAPLAGQQYIPDEKS 739

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195027275|ref|XP_001986509.1| GH20485 [Drosophila grimshawi] gi|193902509|gb|EDW01376.1| GH20485 [Drosophila grimshawi]

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 62/118 (52%), Positives = 75/118 (63%), Gaps = 1/118 (0%)

Query: 11  VKHFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYC 70
           V  F C +C+  ++F     K T+    E+ WHP CF C TC ELL DL+YF + G VYC
Sbjct: 636 VSTFNCRDCNLPIEFGEVAVK-TERAGKEIAWHPGCFKCHTCRELLADLVYFFHHGQVYC 694

Query: 71  LRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYIPVTES 128
            RD A  L IPRC ACDELIF  EYT AE  T+H+KHFCC +CD+ L  Q YIP  +S
Sbjct: 695 GRDLAIKLKIPRCKACDELIFTKEYTAAEGATYHIKHFCCLQCDEPLAGQQYIPEEKS 752

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328724369|ref|XP_001949083.2| PREDICTED: testin-like [Acyrthosiphon pisum]

 Score =  135 bits (341), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 63/115 (54%), Positives = 82/115 (71%), Gaps = 2/115 (1%)

Query: 16  CYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYA 75
           C +C+K V        + +    EV WHP CFVC+TC+ELLVDL+YF+Y  NVYC R YA
Sbjct: 367 CKQCNKNV-IPGQVAVMAERTGKEVFWHPPCFVCATCEELLVDLVYFYYSENVYCGRHYA 425

Query: 76  TMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYIPVTESRP 130
            +L+IPRC+ACDELIF+ EYT+AE  T+HV+HFCC+ECDK L    Y+ + E +P
Sbjct: 426 EILNIPRCNACDELIFLKEYTIAEEHTYHVRHFCCFECDKPLAGLEYVSI-EKQP 479

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383852121|ref|XP_003701577.1| PREDICTED: uncharacterized protein LOC100875736 [Megachile rotundata]

 Score =  135 bits (340), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 60/113 (53%), Positives = 81/113 (71%), Gaps = 2/113 (1%)

Query: 11  VKHFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYC 70
           +K   C++C++++   +    +T  +   V+WHP CFVCSTC+ELLVDL+YF+YK  +YC
Sbjct: 605 IKPQKCHKCEEEIHIGDVA--VTTEKAKNVVWHPGCFVCSTCNELLVDLVYFYYKNKLYC 662

Query: 71  LRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYI 123
            RD A +L IPRC ACDELIFV EYT+AE   +HVKHFCC++CD  L  + YI
Sbjct: 663 GRDLAALLGIPRCFACDELIFVREYTVAEGHNYHVKHFCCWDCDVPLAGKQYI 715

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195455875|ref|XP_002074904.1| GK23303 [Drosophila willistoni] gi|194170989|gb|EDW85890.1| GK23303 [Drosophila willistoni]

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 61/113 (53%), Positives = 71/113 (62%), Gaps = 1/113 (0%)

Query: 16  CYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYA 75
           C +C   + F     K  ++ + E+ WHP CF C TC ELL DL+YF + G VYC RD A
Sbjct: 618 CRDCSLPIHFGEVAVKAERAGK-EIAWHPACFKCHTCRELLADLVYFFHHGQVYCGRDLA 676

Query: 76  TMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYIPVTES 128
             L IPRC ACDELIF  EYT AE  TFH+KHFCCY CD  L  Q YIP  +S
Sbjct: 677 IKLKIPRCKACDELIFTKEYTAAEGSTFHIKHFCCYHCDVPLAGQQYIPDEKS 729

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195123843|ref|XP_002006411.1| GI21028 [Drosophila mojavensis] gi|193911479|gb|EDW10346.1| GI21028 [Drosophila mojavensis]

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 60/118 (50%), Positives = 75/118 (63%), Gaps = 1/118 (0%)

Query: 11  VKHFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYC 70
           V +  C +C   ++F     K  ++ + E+ WHP CF C TC ELL DL+YF + G VYC
Sbjct: 641 VSNISCRDCGLAIEFGEVAVKAERAGK-EIAWHPGCFKCQTCRELLADLVYFFHHGQVYC 699

Query: 71  LRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYIPVTES 128
            RD A  L IPRC ACDELIF  EYT AE  T+H+KHFCC +CD+ L  Q YIP  +S
Sbjct: 700 GRDLAIKLKIPRCKACDELIFTKEYTAAEGATYHIKHFCCLQCDEPLAGQQYIPDEKS 757

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357627628|gb|EHJ77266.1| testin [Danaus plexippus]

 Score =  132 bits (331), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 57/119 (47%), Positives = 73/119 (61%), Gaps = 1/119 (0%)

Query: 6   NKTFHVKHFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYK 65
           N+  + +   C  C+K + F        +    E +WHPQCF C  C ELL DL+YF+YK
Sbjct: 504 NRKLYNEGVPCQRCEKPM-FAGEVAVKAERAGQEAIWHPQCFTCCKCGELLADLVYFYYK 562

Query: 66  GNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYIP 124
           G +YC RD A +L+IPRC  CDELIF   YT AE + FHV+HFCCY CD  L  + Y+P
Sbjct: 563 GEIYCARDLANVLEIPRCAGCDELIFTRPYTAAEGRAFHVEHFCCYHCDAPLGGKKYVP 621

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195150369|ref|XP_002016127.1| GL10662 [Drosophila persimilis] gi|194109974|gb|EDW32017.1| GL10662 [Drosophila persimilis]

 Score =  132 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 56/90 (62%), Positives = 65/90 (72%)

Query: 39  EVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELIFVNEYTLA 98
           E+ WHP CF C TC ELL DL+YF ++G VYC RD A  L IPRC ACDELIF  EYT A
Sbjct: 649 EIAWHPGCFKCHTCRELLADLVYFFHQGQVYCGRDLAIKLKIPRCKACDELIFTKEYTAA 708

Query: 99  ENKTFHVKHFCCYECDKELCNQSYIPVTES 128
           E  T+H+KHFCCY+CD+ L  Q YIP  +S
Sbjct: 709 EGATYHIKHFCCYQCDEPLAGQQYIPDEKS 738

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198457161|ref|XP_001360570.2| GA19661 [Drosophila pseudoobscura pseudoobscura] gi|198135882|gb|EAL25145.2| GA19661 [Drosophila pseudoobscura pseudoobscura]

 Score =  132 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 56/90 (62%), Positives = 65/90 (72%)

Query: 39  EVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELIFVNEYTLA 98
           E+ WHP CF C TC ELL DL+YF ++G VYC RD A  L IPRC ACDELIF  EYT A
Sbjct: 649 EIAWHPGCFKCHTCRELLADLVYFFHQGQVYCGRDLAIKLKIPRCKACDELIFTKEYTAA 708

Query: 99  ENKTFHVKHFCCYECDKELCNQSYIPVTES 128
           E  T+H+KHFCCY+CD+ L  Q YIP  +S
Sbjct: 709 EGATYHIKHFCCYQCDEPLAGQQYIPDEKS 738

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	138
FB|FBgn0034223	816	Tes "Testin ortholog" [Drosoph	0.775	0.131	0.527	2.5e-29
UNIPROTKB|Q07E27	421	TES "Testin" [Mustela putorius	0.876	0.287	0.472	3.9e-28
UNIPROTKB|Q2QLB2	421	TES "Testin" [Equus caballus (	0.869	0.285	0.472	3.9e-28
MGI|MGI:105081	423	Tes "testis derived transcript	0.811	0.264	0.482	1.7e-27
UNIPROTKB|A0M8U6	421	TES "Testin" [Canis lupus fami	0.876	0.287	0.456	2.2e-27
UNIPROTKB|E2RDJ9	412	TES "Testin" [Canis lupus fami	0.876	0.293	0.456	2.2e-27
UNIPROTKB|F1PFX9	421	TES "Testin" [Canis lupus fami	0.876	0.287	0.456	2.2e-27
UNIPROTKB|Q2IBC3	421	TES "Testin" [Rhinolophus ferr	0.826	0.270	0.470	2.8e-27
RGD|1566346	419	Tes "testis derived transcript	0.884	0.291	0.444	3.5e-27
UNIPROTKB|Q09YJ2	421	TES "Testin" [Ovis aries (taxi	0.876	0.287	0.456	4.5e-27

FB|FBgn0034223 Tes "Testin ortholog" [Drosophila melanogaster (taxid:7227)]

 Score = 335 (123.0 bits), Expect = 2.5e-29, P = 2.5e-29
 Identities = 57/108 (52%), Positives = 72/108 (66%)

Query:    16 CYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYA 75
             C +C++ +       K  ++ + E+ WHP CF C TC ELL DL+YF ++G V+C RD A
Sbjct:   627 CADCNQPIAMGEVAVKADRAGK-EIAWHPGCFKCITCRELLADLVYFFHQGQVFCGRDLA 685

Query:    76 TMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYI 123
               L IPRC ACDELIF  EYT AE  TFH+KHFCCY+CD+ L  Q YI
Sbjct:   686 IRLKIPRCRACDELIFTKEYTAAEEATFHIKHFCCYQCDEPLAGQQYI 733

GO:0008270 "zinc ion binding" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|Q07E27 TES "Testin" [Mustela putorius furo (taxid:9669)]

 Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 59/125 (47%), Positives = 79/125 (63%)

Query:     5 ENKTF-HVK-HFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYF 62
             E+K+  H K  + CY C + ++ E       +    + LWHP CFVCSTC ELLVD++YF
Sbjct:   223 EDKSAEHKKTQYSCYCCKQSMK-EGDPAIYAERAGYDKLWHPACFVCSTCHELLVDMIYF 281

Query:    63 HYKGNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSY 122
               KG +YC R Y    + PRC  CDELIF NEYT AEN+ +H+KHFCC++CD  L  + Y
Sbjct:   282 WKKGKLYCGRHYCDS-EKPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDNILAGEIY 340

Query:   123 IPVTE 127
             + V +
Sbjct:   341 VMVND 345

GO:0005737 "cytoplasm" evidence=ISS

GO:0008270 "zinc ion binding" evidence=ISS

GO:0008285 "negative regulation of cell proliferation" evidence=ISS

UNIPROTKB|Q2QLB2 TES "Testin" [Equus caballus (taxid:9796)]

 Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 59/125 (47%), Positives = 77/125 (61%)

Query:     3 LAENKTFHVKHFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYF 62
             LAENK      + CY C+  ++ E       +    + LWHP CFVCSTC ELLVD++YF
Sbjct:   226 LAENKR---TQYSCYCCNLSMK-EGDPAIYAERAGYDKLWHPACFVCSTCHELLVDMIYF 281

Query:    63 HYKGNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSY 122
                G +YC R Y    + PRC  CDELIF NEYT AEN+ +H+KHFCC++CD  L  + Y
Sbjct:   282 WKNGKLYCGRHYCDS-EKPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIY 340

Query:   123 IPVTE 127
             + V +
Sbjct:   341 VMVND 345

GO:0005737 "cytoplasm" evidence=ISS

GO:0008270 "zinc ion binding" evidence=ISS

GO:0008285 "negative regulation of cell proliferation" evidence=ISS

MGI|MGI:105081 Tes "testis derived transcript" [Mus musculus (taxid:10090)]

 Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 55/114 (48%), Positives = 71/114 (62%)

Query:    14 FCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRD 73
             + CY C K    E       +    + LWHP CF+CSTC ELLVD++YF   G +YC R 
Sbjct:   236 YSCY-CCKHTTNEGEPAIYAERAGYDKLWHPACFICSTCGELLVDMIYFWKNGKLYCGRH 294

Query:    74 YATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYIPVTE 127
             Y    + PRC  CDELIF NEYT AEN+ +H+KHFCC++CD  L  + Y+ VT+
Sbjct:   295 YCDS-EKPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDHILAGKIYVMVTD 347

GO:0005737 "cytoplasm" evidence=IDA

GO:0008270 "zinc ion binding" evidence=ISO

GO:0008285 "negative regulation of cell proliferation" evidence=ISO

GO:0030054 "cell junction" evidence=IEA

GO:0043234 "protein complex" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|A0M8U6 TES "Testin" [Canis lupus familiaris (taxid:9615)]

 Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 57/125 (45%), Positives = 77/125 (61%)

Query:     5 ENKTFHVKH--FCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYF 62
             E+K+   K   + CY C + ++ E       +    + LWHP CFVCSTC ELLVD++YF
Sbjct:   223 EDKSAEHKRTQYSCYCCKQSMK-EGDPAIYAERAGYDKLWHPACFVCSTCHELLVDMIYF 281

Query:    63 HYKGNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSY 122
                G +YC R Y    + PRC  CDELIF NEYT AEN+ +H+KHFCC++CD  L  + Y
Sbjct:   282 WKNGKLYCGRHYCDS-EKPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDNILAGEIY 340

Query:   123 IPVTE 127
             + V +
Sbjct:   341 VMVND 345

GO:0005737 "cytoplasm" evidence=ISS

GO:0008270 "zinc ion binding" evidence=ISS

GO:0008285 "negative regulation of cell proliferation" evidence=ISS

GO:0005925 "focal adhesion" evidence=IEA

UNIPROTKB|E2RDJ9 TES "Testin" [Canis lupus familiaris (taxid:9615)]

 Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 57/125 (45%), Positives = 77/125 (61%)

Query:     5 ENKTFHVKH--FCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYF 62
             E+K+   K   + CY C + ++ E       +    + LWHP CFVCSTC ELLVD++YF
Sbjct:   214 EDKSAEHKRTQYSCYCCKQSMK-EGDPAIYAERAGYDKLWHPACFVCSTCHELLVDMIYF 272

Query:    63 HYKGNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSY 122
                G +YC R Y    + PRC  CDELIF NEYT AEN+ +H+KHFCC++CD  L  + Y
Sbjct:   273 WKNGKLYCGRHYCDS-EKPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDNILAGEIY 331

Query:   123 IPVTE 127
             + V +
Sbjct:   332 VMVND 336

GO:0043234 "protein complex" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1PFX9 TES "Testin" [Canis lupus familiaris (taxid:9615)]

 Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 57/125 (45%), Positives = 77/125 (61%)

Query:     5 ENKTFHVKH--FCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYF 62
             E+K+   K   + CY C + ++ E       +    + LWHP CFVCSTC ELLVD++YF
Sbjct:   223 EDKSAEHKRTQYSCYCCKQSMK-EGDPAIYAERAGYDKLWHPACFVCSTCHELLVDMIYF 281

Query:    63 HYKGNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSY 122
                G +YC R Y    + PRC  CDELIF NEYT AEN+ +H+KHFCC++CD  L  + Y
Sbjct:   282 WKNGKLYCGRHYCDS-EKPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDNILAGEIY 340

Query:   123 IPVTE 127
             + V +
Sbjct:   341 VMVND 345

GO:0043234 "protein complex" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q2IBC3 TES "Testin" [Rhinolophus ferrumequinum (taxid:59479)]

 Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 55/117 (47%), Positives = 74/117 (63%)

Query:    14 FCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRD 73
             + CY C   ++ E       +    + LWHP CFVCSTC+ELLVD++YF   G +YC R 
Sbjct:   234 YSCYCCKLSMK-EGDPAIYAERAGYDKLWHPACFVCSTCEELLVDMIYFWKNGKLYCGRH 292

Query:    74 YATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYIPVTESRP 130
             Y    + PRC  CDELIF NEYT AEN+ +H+KHFCC++CD  L  + Y+ V + +P
Sbjct:   293 YCDS-EKPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDNILAGEIYVMV-DDKP 347

GO:0005737 "cytoplasm" evidence=ISS

GO:0008270 "zinc ion binding" evidence=ISS

GO:0008285 "negative regulation of cell proliferation" evidence=ISS

RGD|1566346 Tes "testis derived transcript" [Rattus norvegicus (taxid:10116)]

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 56/126 (44%), Positives = 76/126 (60%)

Query:     4 AENKTFHVK--HFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMY 61
             +++K+   K   + CY C K    E       +    + LWHP CF+CSTC ELLVD++Y
Sbjct:   220 SKDKSAEAKKTQYSCY-CCKNTMREGDPAIYAERAGYDKLWHPACFICSTCGELLVDMIY 278

Query:    62 FHYKGNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQS 121
             F   G +YC R Y    + PRC  CDELIF NEYT AEN+ +H+KHFCC++CD  L  + 
Sbjct:   279 FWKNGKLYCGRHYCDS-EKPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDNILAGKI 337

Query:   122 YIPVTE 127
             Y+ V +
Sbjct:   338 YVMVRD 343

GO:0005737 "cytoplasm" evidence=ISO;ISS

GO:0005886 "plasma membrane" evidence=ISO

GO:0005925 "focal adhesion" evidence=IEA

GO:0008270 "zinc ion binding" evidence=ISO;ISS

GO:0008285 "negative regulation of cell proliferation" evidence=ISO;ISS

GO:0030054 "cell junction" evidence=ISO

GO:0043234 "protein complex" evidence=ISO

UNIPROTKB|Q09YJ2 TES "Testin" [Ovis aries (taxid:9940)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 57/125 (45%), Positives = 76/125 (60%)

Query:     5 ENKTFHVKH--FCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYF 62
             E+K+   K   + CY C   ++ E       +    + LWHP CFVCSTC ELLVD++YF
Sbjct:   223 EDKSAEHKRTQYSCYCCKLSMK-EGDPAIYAERAGYDKLWHPACFVCSTCHELLVDMIYF 281

Query:    63 HYKGNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSY 122
                G +YC R Y    + PRC  CDELIF NEYT AEN+ +H+KHFCC++CD  L  + Y
Sbjct:   282 WKNGKLYCGRHYCDS-EKPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDNILAGEIY 340

Query:   123 IPVTE 127
             + V +
Sbjct:   341 VMVND 345

GO:0005737 "cytoplasm" evidence=ISS

GO:0008270 "zinc ion binding" evidence=ISS

GO:0008285 "negative regulation of cell proliferation" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P47226	TES_MOUSE	No assigned EC number	0.5747	0.6231	0.2033	yes	N/A
Q7Z3G6	PRIC2_HUMAN	No assigned EC number	0.5604	0.6449	0.1054	yes	N/A
Q09YN8	TES_RABIT	No assigned EC number	0.5632	0.6231	0.2042	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	138
cd09341	56	cd09341, LIM2_Testin_like, The second LIM domain o	1e-18
cd09340	58	cd09340, LIM1_Testin_like, The first LIM domain of	7e-15
cd09415	59	cd09415, LIM1_Prickle, The first LIM domain of Pri	5e-14
cd09416	56	cd09416, LIM2_Testin, The second LIM domain of Tes	9e-13
cd09418	56	cd09418, LIM2_Prickle, The second LIM domain of Pr	1e-12
cd09841	59	cd09841, LIM1_Prickle_3, The first LIM domain of P	3e-11
cd09484	59	cd09484, LIM1_Prickle_2, The first LIM domain of P	4e-11
cd09483	59	cd09483, LIM1_Prickle_1, The first LIM domain of P	2e-10
cd09413	58	cd09413, LIM1_Testin, The first LIM domain of Test	2e-10
cd09414	58	cd09414, LIM1_LIMPETin, The first LIM domain of pr	1e-09
cd09417	56	cd09417, LIM2_LIMPETin_like, The second LIM domain	7e-09
cd09341	56	cd09341, LIM2_Testin_like, The second LIM domain o	2e-05
cd08368	53	cd08368, LIM, LIM is a small protein-protein inter	2e-05
cd08368	53	cd08368, LIM, LIM is a small protein-protein inter	2e-04
cd09331	59	cd09331, LIM1_PINCH, The first LIM domain of prote	2e-04
pfam00412	58	pfam00412, LIM, LIM domain	3e-04
pfam00412	58	pfam00412, LIM, LIM domain	3e-04
COG0068	750	COG0068, HypF, Hydrogenase maturation factor [Post	8e-04
smart00132	54	smart00132, LIM, Zinc-binding domain present in Li	0.001
smart00132	54	smart00132, LIM, Zinc-binding domain present in Li	0.001
cd09416	56	cd09416, LIM2_Testin, The second LIM domain of Tes	0.002
cd09336	53	cd09336, LIM1_Paxillin_like, The first LIM domain	0.003

>gnl|CDD|188727 cd09341, LIM2_Testin_like, The second LIM domain of Testin-like family

 Score = 73.8 bits (182), Expect = 1e-18
 Identities = 29/50 (58%), Positives = 36/50 (72%), Gaps = 1/50 (2%)

Query: 81  PRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYIPVTESRP 130
           PRC ACDELIF  EYT AE K +H+KHFCC++CD+ L  Q Y+   E +P
Sbjct: 1   PRCAACDELIFSGEYTQAEGKNWHLKHFCCFQCDEPLGGQRYVLR-EGKP 49

The second LIM domain of Testin-like family: This family includes testin, prickle, dyxin and LIMPETin. Structurally, testin and prickle proteins contain three LIM domains at C-terminal; LIMPETin has six LIM domains; and dyxin presents only two LIM domains. However, all members of the family contain a PET protein-protein interaction domain. Testin is a cytoskeleton associated focal adhesion protein that localizes along actin stress fibers, at cell-cell-contact areas, and at focal adhesion plaques. Testin interacts with a variety of cytoskeletal proteins, including zyxin, mena, VASP, talin, and actin and it is involved in cell motility and adhesion events. Prickles have been implicated in roles of regulating tissue polarity or planar cell polarity (PCP). Dyxin involves in lung and heart development by interaction with GATA6 and blocking GATA6 activated target genes. LIMPETin might be the recombinant product of genes coding testin and four and half LIM proteins and its function is not well understood. As in other LIM domains, this domain family is 50-60 amino acids in size and shares two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. Length = 56

>gnl|CDD|188726 cd09340, LIM1_Testin_like, The first LIM domain of Testin-like family

 Score = 63.8 bits (156), Expect = 7e-15
 Identities = 22/36 (61%), Positives = 28/36 (77%)

Query: 39 EVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDY 74
          +  WHP CFVC TC+ELLVDL+YF++ G +YC R Y
Sbjct: 23 DACWHPGCFVCETCNELLVDLIYFYHDGKIYCGRHY 58

The first LIM domain of Testin_like family: This family includes testin, prickle, dyxin and LIMPETin. Structurally, testin and prickle proteins contain three LIM domains at C-terminal; LIMPETin has six LIM domains; and dyxin presents only two LIM domains. However, all members of the family contain a PET protein-protein interaction domain. Testin is a cytoskeleton associated focal adhesion protein that localizes along actin stress fibers, at cell-cell-contact areas, and at focal adhesion plaques. Testin interacts with a variety of cytoskeletal proteins, including zyxin, mena, VASP, talin, and actin and it is involved in cell motility and adhesion events. Prickles have been implicated in roles of regulating tissue polarity or planar cell polarity (PCP). Dyxin involves in lung and heart development by interaction with GATA6 and blocking GATA6 activated target genes. LIMPETin might be the recombinant product of genes coding testin and four and half LIM proteins and its function is not well understood. As in other LIM domains, this domain family is 50-60 amino acids in size and shares two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. Length = 58

>gnl|CDD|188799 cd09415, LIM1_Prickle, The first LIM domain of Prickle

 Score = 61.9 bits (151), Expect = 5e-14
 Identities = 24/34 (70%), Positives = 27/34 (79%)

Query: 42 WHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYA 75
          WHP CFVCSTC ELLVDL+YF+  G VYC R +A
Sbjct: 26 WHPACFVCSTCKELLVDLIYFYQDGKVYCGRHHA 59

The first LIM domain of Prickle: Prickle contains three C-terminal LIM domains and a N-terminal PET domain. Prickles have been implicated in roles of regulating tissue polarity or planar cell polarity (PCP). PCP establishment requires the conserved Frizzled/Dishevelled PCP pathway. Prickle interacts with Dishevelled, thereby modulating Frizzled/Dishevelled activity and PCP signaling. Four forms of prickles have been identified: prickle 1-4. The best characterized is prickle 1 and prickle 2 which are differentially expressed. While prickle 1 is expressed in fetal heart and hematological malignancies, prickle 2 is found in fetal brain, adult cartilage, pancreatic islet, and some types of timorous cells. Mutations in prickle 1 have been linked to progressive myoclonus epilepsy. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. Length = 59

>gnl|CDD|188800 cd09416, LIM2_Testin, The second LIM domain of Testin

 Score = 58.7 bits (142), Expect = 9e-13
 Identities = 27/47 (57%), Positives = 35/47 (74%)

Query: 81  PRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYIPVTE 127
           PRC  CDELIF NEYT AEN+ +H+KHFCC++CD  L  + Y+ V +
Sbjct: 1   PRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDNILAGEIYVMVND 47

The second LIM domain of Testin: Testin contains three C-terminal LIM domains and a PET protein-protein interaction domain at the N-terminal. Testin is a cytoskeleton associated focal adhesion protein that localizes along actin stress fibers, at cell-cell-contact areas, and at focal adhesion plaques. Testin interacts with a variety of cytoskeletal proteins, including zyxin, mena, VASP, talin, and actin and it is involved in cell motility and adhesion events. Knockout mice experiments reveal that tumor repressor function of testin. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. Length = 56

>gnl|CDD|188802 cd09418, LIM2_Prickle, The second LIM domain of Prickle

 Score = 58.2 bits (141), Expect = 1e-12
 Identities = 28/50 (56%), Positives = 37/50 (74%), Gaps = 1/50 (2%)

Query: 81  PRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYIPVTESRP 130
           PRC ACDE+IF +E T AE + +H+KHFCC+EC+ +L  Q YI + E RP
Sbjct: 1   PRCSACDEIIFADECTEAEGRHWHMKHFCCFECECQLGGQRYI-MREGRP 49

The second LIM domain of Prickle: Prickle contains three C-terminal LIM domains and a N-terminal PET domain. Prickles have been implicated in roles of regulating tissue polarity or planar cell polarity (PCP). PCP establishment requires the conserved Frizzled/Dishevelled PCP pathway. Prickle interacts with Dishevelled, thereby modulating Frizzled/Dishevelled activity and PCP signaling. Two forms of prickles have been identified; namely prickle 1 and prickle 2. Prickle 1 and prickle 2 are differentially expressed. While prickle 1 is expressed in fetal heart and hematological malignancies, prickle 2 is found in fetal brain, adult cartilage, pancreatic islet, and some types of timorous cells. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. Length = 56

>gnl|CDD|188872 cd09841, LIM1_Prickle_3, The first LIM domain of Prickle 3

 Score = 54.9 bits (132), Expect = 3e-11
 Identities = 21/34 (61%), Positives = 27/34 (79%)

Query: 42 WHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYA 75
          WHPQCF C++C ELLVDL+YF+  G +YC R +A
Sbjct: 26 WHPQCFQCASCQELLVDLIYFYQDGKIYCGRHHA 59

The first LIM domain of Prickle 3/LIM domain only 6 (LM06): Prickle contains three C-terminal LIM domains and a N-terminal PET domain. Prickles have been implicated in roles of regulating tissue polarity or planar cell polarity (PCP). PCP establishment requires the conserved Frizzled/Dishevelled PCP pathway. Prickle interacts with Dishevelled, thereby modulating Frizzled/Dishevelled activity and PCP signaling. Four forms of prickles have been identified: prickle 1-4. The best characterized is prickle 1 and prickle 2 which are differentially expressed. While prickle 1 is expressed in fetal heart and hematological malignancies, prickle 2 is found in fetal brain, adult cartilage, pancreatic islet, and some types of timorous cells. Mutations in prickle 1 have been linked to progressive myoclonus epilepsy. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. Length = 59

>gnl|CDD|188868 cd09484, LIM1_Prickle_2, The first LIM domain of Prickle 2

 Score = 54.2 bits (130), Expect = 4e-11
 Identities = 24/36 (66%), Positives = 29/36 (80%)

Query: 40 VLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYA 75
          V WHPQCFVCS C+ELLVDL+YF+  G +YC R +A
Sbjct: 24 VCWHPQCFVCSVCNELLVDLIYFYQDGKIYCGRHHA 59

The first LIM domain of Prickle 2: Prickle contains three C-terminal LIM domains and a N-terminal PET domain. Prickles have been implicated in roles of regulating tissue polarity or planar cell polarity (PCP). PCP establishment requires the conserved Frizzled/Dishevelled PCP pathway. Prickle interacts with Dishevelled, thereby modulating Frizzled/Dishevelled activity and PCP signaling. Four forms of prickles have been identified: prickle 1-4. The best characterized is prickle 1 and prickle 2 which are differentially expressed. While prickle 1 is expressed in fetal heart and hematological malignancies, prickle 2 is found in fetal brain, adult cartilage, pancreatic islet, and some types of timorous cells. Mutations in prickle 1 have been linked to progressive myoclonus epilepsy. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. Length = 59

>gnl|CDD|188867 cd09483, LIM1_Prickle_1, The first LIM domain of Prickle 1

 Score = 53.0 bits (127), Expect = 2e-10
 Identities = 22/36 (61%), Positives = 28/36 (77%)

Query: 40 VLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYA 75
          V WHP CFVC TC+ELLVDL+YF+  G ++C R +A
Sbjct: 24 VCWHPSCFVCFTCNELLVDLIYFYQDGKIHCGRHHA 59

The first LIM domain of Prickle 1. Prickle contains three C-terminal LIM domains and a N-terminal PET domain Prickles have been implicated in roles of regulating tissue polarity or planar cell polarity (PCP). PCP establishment requires the conserved Frizzled/Dishevelled PCP pathway. Prickle interacts with Dishevelled, thereby modulating Frizzled/Dishevelled activity and PCP signaling. Four forms of prickles have been identified: prickle 1-4. The best characterized is prickle 1 and prickle 2 which are differentially expressed. While prickle 1 is expressed in fetal heart and hematological malignancies, prickle 2 is found in mainly expressed in fetal brain, adult cartilage, pancreatic islet, and some types of timorous cells. In addition, Prickle 1 regulates cell movements during gastrulation and neuronal migration through interaction with the noncanonical Wnt11/Wnt5 pathway in zebrafish. Mutations in prickle 1 have been linked to progressive myoclonus epilepsy. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. Length = 59

>gnl|CDD|188797 cd09413, LIM1_Testin, The first LIM domain of Testin

 Score = 52.8 bits (127), Expect = 2e-10
 Identities = 23/34 (67%), Positives = 26/34 (76%)

Query: 41 LWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDY 74
          LWHP CFVCSTC ELLVD++YF   G +YC R Y
Sbjct: 25 LWHPACFVCSTCGELLVDMIYFWKNGKLYCGRHY 58

The first LIM domain of Testin: Testin contains three C-terminal LIM domains and a PET protein-protein interaction domain at the N-terminal. Testin is a cytoskeleton associated focal adhesion protein that localizes along actin stress fibers, at cell-cell-contact areas, and at focal adhesion plaques. Testin interacts with a variety of cytoskeletal proteins, including zyxin, mena, VASP, talin, and actin and it is involved in cell motility and adhesion events. Knockout mice experiments reveal that tumor repressor function of Testin. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. Length = 58

>gnl|CDD|188798 cd09414, LIM1_LIMPETin, The first LIM domain of protein LIMPETin

 Score = 50.5 bits (121), Expect = 1e-09
 Identities = 21/35 (60%), Positives = 25/35 (71%)

Query: 40 VLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDY 74
          +LWHP CF CSTC+ELLVDL Y  +   +YC R Y
Sbjct: 24 LLWHPACFRCSTCEELLVDLTYCVHDDQIYCERHY 58

The first LIM domain of protein LIMPETin: LIMPETin contains 6 LIM domains at the C-terminal and an N-terminal PET domain. Four of the six LIM domains are highly homologous to the four and half LIM domain protein family and two of them show sequence similarity to the LIM domains of the Testin family. Thus, LIMPETin may be the recombinant product of genes coding testin and FHL proteins. In Schistosoma mansoni, where LIMPETin was first identified, LIMPETin is down regulated in sexually mature adult Schistosoma females compared to sexually immature adult females and adult male. Its differential expression indicates that it is a transcription regulator. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. Length = 58

>gnl|CDD|188801 cd09417, LIM2_LIMPETin_like, The second LIM domain of protein LIMPETin and related proteins

 Score = 48.7 bits (116), Expect = 7e-09
 Identities = 23/43 (53%), Positives = 28/43 (65%)

Query: 81  PRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYI 123
            R   CDELIF  EYT A NK +H  HFCC++CD+ L  Q Y+
Sbjct: 1   DRSVQCDELIFSGEYTKAMNKDWHSGHFCCWQCDESLTGQRYV 43

The second LIM domain of protein LIMPETin: LIMPETin contains 6 LIM domains at the C-terminal and an N-terminal PET domain. Four of the six LIM domains are highly homologous to the four and half LIM domain protein family and two of them show sequence similarity to the LIM domains of the testin family. Thus, LIMPETin may be the recombinant product of genes coding testin and FHL proteins. In Schistosoma mansoni, where LIMPETin was first identified, LIMPETin is down regulated in sexually mature adult Schistosoma females compared to sexually immature adult females and adult male. Its differential expression indicates that it is a transcription regulator. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. Length = 56

>gnl|CDD|188727 cd09341, LIM2_Testin_like, The second LIM domain of Testin-like family

 Score = 39.5 bits (93), Expect = 2e-05
 Identities = 14/28 (50%), Positives = 21/28 (75%)

Query: 1  YTLAENKTFHVKHFCCYECDKKVQFENY 28
          YT AE K +H+KHFCC++CD+ +  + Y
Sbjct: 15 YTQAEGKNWHLKHFCCFQCDEPLGGQRY 42

The second LIM domain of Testin-like family: This family includes testin, prickle, dyxin and LIMPETin. Structurally, testin and prickle proteins contain three LIM domains at C-terminal; LIMPETin has six LIM domains; and dyxin presents only two LIM domains. However, all members of the family contain a PET protein-protein interaction domain. Testin is a cytoskeleton associated focal adhesion protein that localizes along actin stress fibers, at cell-cell-contact areas, and at focal adhesion plaques. Testin interacts with a variety of cytoskeletal proteins, including zyxin, mena, VASP, talin, and actin and it is involved in cell motility and adhesion events. Prickles have been implicated in roles of regulating tissue polarity or planar cell polarity (PCP). Dyxin involves in lung and heart development by interaction with GATA6 and blocking GATA6 activated target genes. LIMPETin might be the recombinant product of genes coding testin and four and half LIM proteins and its function is not well understood. As in other LIM domains, this domain family is 50-60 amino acids in size and shares two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. Length = 56

>gnl|CDD|188711 cd08368, LIM, LIM is a small protein-protein interaction domain, containing two zinc fingers

 Score = 39.2 bits (92), Expect = 2e-05
 Identities = 13/40 (32%), Positives = 17/40 (42%)

Query: 83  CHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSY 122
           C  C + I   E   A  K +H + F C  C K L   S+
Sbjct: 1   CAGCGKPIEGRELLRALGKKWHPECFKCSVCGKPLGGDSF 40

LIM domains are identified in a diverse group of proteins with wide variety of biological functions, including gene expression regulation, cell fate determination, cytoskeleton organization, tumor formation and development. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. They perform their functions through interactions with other protein partners. LIM domains are 50-60 amino acids in size and share two characteristic highly conserved zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. The consensus sequence of LIM domain has been defined as C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16, 21)-C-x(2,3)-[CHD] (where X denotes any amino acid). Length = 53

>gnl|CDD|188711 cd08368, LIM, LIM is a small protein-protein interaction domain, containing two zinc fingers

 Score = 36.9 bits (86), Expect = 2e-04
 Identities = 13/33 (39%), Positives = 18/33 (54%)

Query: 42 WHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDY 74
          WHP+CF CS C + L    ++   G  YC + Y
Sbjct: 21 WHPECFKCSVCGKPLGGDSFYEKDGKPYCEKCY 53

LIM domains are identified in a diverse group of proteins with wide variety of biological functions, including gene expression regulation, cell fate determination, cytoskeleton organization, tumor formation and development. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. They perform their functions through interactions with other protein partners. LIM domains are 50-60 amino acids in size and share two characteristic highly conserved zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. The consensus sequence of LIM domain has been defined as C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16, 21)-C-x(2,3)-[CHD] (where X denotes any amino acid). Length = 53

>gnl|CDD|188717 cd09331, LIM1_PINCH, The first LIM domain of protein PINCH

 Score = 37.3 bits (87), Expect = 2e-04
 Identities = 13/37 (35%), Positives = 23/37 (62%)

Query: 41 LWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATM 77
          L+H QCFVC+ C +   D +++ ++G  YC  D+  +
Sbjct: 21 LYHEQCFVCAQCFQPFPDGLFYEFEGRKYCEHDFQVL 57

The first LIM domain of paxillin: Paxillin is an adaptor protein, which recruits key components of the signal-transduction machinery to specific sub-cellular locations to respond to environmental changes rapidly. The C-terminal region of paxillin contains four LIM domains which target paxillin to focal adhesions, presumably through a direct association with the cytoplasmic tail of beta-integrin. The N-terminal of paxillin is leucine-rich LD-motifs. Paxillin is found at the interface between the plasma membrane and the actin cytoskeleton. The binding partners of paxillin are diverse and include protein tyrosine kinases, such as Src and FAK, structural proteins, such as vinculin and actopaxin, and regulators of actin organization. Paxillin recruits these proteins to their function sites to control the dynamic changes in cell adhesion, cytoskeletal reorganization and gene expression. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. Length = 59

>gnl|CDD|215907 pfam00412, LIM, LIM domain

 Score = 36.2 bits (84), Expect = 3e-04
 Identities = 14/37 (37%), Positives = 21/37 (56%)

Query: 41 LWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATM 77
          +WHP+CF C+ C + L    +F   G +YC  DY  +
Sbjct: 21 VWHPECFRCAVCGKPLGPGDFFEKDGKLYCKHDYFKL 57

This family represents two copies of the LIM structural domain. Length = 58

>gnl|CDD|215907 pfam00412, LIM, LIM domain

 Score = 36.2 bits (84), Expect = 3e-04
 Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 1/41 (2%)

Query: 83  CHACDELIFVNEYTL-AENKTFHVKHFCCYECDKELCNQSY 122
           C  C + I+  E    A  K +H + F C  C K L    +
Sbjct: 1   CAGCGKPIYDRELVRRALGKVWHPECFRCAVCGKPLGPGDF 41

This family represents two copies of the LIM structural domain. Length = 58

>gnl|CDD|223146 COG0068, HypF, Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]

 Score = 37.7 bits (88), Expect = 8e-04
 Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 27/113 (23%)

Query: 22  KVQFENYTG-KITQSQESEVLWHPQCFVCSTCDELLVDLM-----YFHYKGNVYCL---- 71
           ++    +T  +I +S+             +TC++ L ++       + Y     C     
Sbjct: 73  EISESGFTDFRIRKSEGKGNKNTQIPPDAATCEDCLEEIFDPNSRRYLYPFIN-CTNCGP 131

Query: 72  -----------RDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYEC 113
                      R+  +M D P C  CD+     EY    N+ FH +   C +C
Sbjct: 132 RFTIIEALPYDRENTSMADFPLCPFCDK-----EYKDPLNRRFHAQPIACPKC 179

Length = 750

>gnl|CDD|214528 smart00132, LIM, Zinc-binding domain present in Lin-11, Isl-1, Mec-3

 Score = 34.7 bits (80), Expect = 0.001
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 42 WHPQCFVCSTCDELLVDLMYFHYKGNVYCLRD 73
          WHP+CF C+TC + L    +F   G +YC   
Sbjct: 23 WHPECFKCATCGKPLSGDTFFEKDGKLYCKDC 54

Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways. Length = 54

>gnl|CDD|214528 smart00132, LIM, Zinc-binding domain present in Lin-11, Isl-1, Mec-3

 Score = 34.7 bits (80), Expect = 0.001
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 82  RCHACDELIFVNEYTL-AENKTFHVKHFCCYECDKELCNQSYI 123
           +C  C + I+  E  L A  K +H + F C  C K L   ++ 
Sbjct: 1   KCAGCGKPIYGTERVLRALGKVWHPECFKCATCGKPLSGDTFF 43

Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways. Length = 54

>gnl|CDD|188800 cd09416, LIM2_Testin, The second LIM domain of Testin

 Score = 34.4 bits (79), Expect = 0.002
 Identities = 15/28 (53%), Positives = 21/28 (75%)

Query: 1  YTLAENKTFHVKHFCCYECDKKVQFENY 28
          YT AEN+ +H+KHFCC++CD  +  E Y
Sbjct: 15 YTQAENQNWHLKHFCCFDCDNILAGEIY 42

The second LIM domain of Testin: Testin contains three C-terminal LIM domains and a PET protein-protein interaction domain at the N-terminal. Testin is a cytoskeleton associated focal adhesion protein that localizes along actin stress fibers, at cell-cell-contact areas, and at focal adhesion plaques. Testin interacts with a variety of cytoskeletal proteins, including zyxin, mena, VASP, talin, and actin and it is involved in cell motility and adhesion events. Knockout mice experiments reveal that tumor repressor function of testin. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. Length = 56

>gnl|CDD|188722 cd09336, LIM1_Paxillin_like, The first LIM domain of the paxillin like protein family

 Score = 33.5 bits (77), Expect = 0.003
 Identities = 14/33 (42%), Positives = 18/33 (54%)

Query: 42 WHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDY 74
          WHP+ FVC+ C   L    +F   G  YC +DY
Sbjct: 20 WHPEHFVCAECKTELGTKNFFERDGQPYCEKDY 52

The first LIM domain of the paxillin like protein family: This family consists of paxillin, leupaxin, Hic-5 (ARA55), and other related proteins. There are four LIM domains in the C-terminal of the proteins and leucine-rich LD-motifs in the N-terminal region. Members of this family are adaptor proteins to recruit key components of signal-transduction machinery to specific sub-cellular locations. Paxillin is found at the interface between the plasma membrane and the actin cytoskeleton. Paxillin serves as a platform for the recruitment of numerous regulatory and structural proteins that together control the dynamic changes in cell adhesion, cytoskeletal reorganization and gene expression that are necessary for cell migration and survival. Leupaxin is a cytoskeleton adaptor protein, which is preferentially expressed in hematopoietic cells. It associates with focal adhesion kinases PYK2 and pp125FAK and identified to be a component of the osteoclast pososomal signaling complex. Hic-5 controls cell proliferation, migration and senescence by functioning as coactivator for steroid receptors such as androgen receptor, glucocorticoid receptor and progesterone receptor. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	138
KOG1701|consensus	468		99.93
KOG1701|consensus	468		99.92
KOG2272|consensus	332		99.9
KOG4577|consensus	383		99.87
KOG2272|consensus	332		99.87
KOG1044|consensus	670		99.86
KOG1703|consensus	479		99.84
KOG1044|consensus	670		99.75
KOG1703|consensus	479		99.73
PF00412	58	LIM: LIM domain; InterPro: IPR001781 Zinc finger (	99.56
PF00412	58	LIM: LIM domain; InterPro: IPR001781 Zinc finger (	99.5
KOG1700|consensus	200		99.3
smart00132	39	LIM Zinc-binding domain present in Lin-11, Isl-1,	99.04
KOG4577|consensus	383		98.96
smart00132	39	LIM Zinc-binding domain present in Lin-11, Isl-1,	98.64
KOG1700|consensus	200		97.84
KOG0490|consensus	235		97.67
KOG1702|consensus	264		97.18
KOG1702|consensus	264		97.15
PF08394	37	Arc_trans_TRASH: Archaeal TRASH domain; InterPro:	95.17
PF14446	54	Prok-RING_1: Prokaryotic RING finger family 1	94.2
PF10367	109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	90.79
PF10083	158	DUF2321: Uncharacterized protein conserved in bact	90.44
COG4357	105	Zinc finger domain containing protein (CHY type) [	89.39
PF13240	23	zinc_ribbon_2: zinc-ribbon domain	88.76
PF09943	101	DUF2175: Uncharacterized protein conserved in arch	88.01
PRK14890	59	putative Zn-ribbon RNA-binding protein; Provisiona	87.68
KOG0490|consensus	235		86.69
PF10235	90	Cript: Microtubule-associated protein CRIPT; Inter	85.62
COG2888	61	Predicted Zn-ribbon RNA-binding protein with a fun	84.39
PF13248	26	zf-ribbon_3: zinc-ribbon domain	84.35
PF07191	70	zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807	84.26
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	84.24
PF11781	36	RRN7: RNA polymerase I-specific transcription init	83.94
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	83.44
PF10886	54	DUF2685: Protein of unknown function (DUF2685); In	81.33
PF02069	52	Metallothio_Pro: Prokaryotic metallothionein; Inte	81.24
PF14569	80	zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.	80.19

>KOG1701|consensus

Probab=99.93  E-value=1.2e-26  Score=172.71  Aligned_cols=131  Identities=25%  Similarity=0.573  Sum_probs=113.5

Q ss_pred             eeecCCCcCcCCcccccccccccCCCeEEEecc-------------------------ccCCCCCCcccCcccccCCccc
Q psy10674          2 TLAENKTFHVKHFCCYECDKKVQFENYTGKITQ-------------------------SQESEVLWHPQCFVCSTCDELL   56 (138)
Q Consensus         2 ~~a~g~~~h~~~~~C~~C~~~i~~~~~~~~~~~-------------------------~~~~~~~~H~~Cf~C~~C~~~l   56 (138)
                      ++||++.||.+||+|..|++.|....|+...++                         +-++|+.||+.||+|.+|.+.|
T Consensus       291 c~Am~~~fHv~CFtC~~C~r~L~Gq~FY~v~~k~~CE~cyq~tlekC~~Cg~~I~d~iLrA~GkayHp~CF~Cv~C~r~l  370 (468)
T KOG1701|consen  291 VEAMDQLFHVQCFTCRTCRRQLAGQSFYQVDGKPYCEGCYQDTLEKCNKCGEPIMDRILRALGKAYHPGCFTCVVCARCL  370 (468)
T ss_pred             HHHhhhhhcccceehHhhhhhhccccccccCCcccchHHHHHHHHHHhhhhhHHHHHHHHhcccccCCCceEEEEecccc
Confidence            479999999999999999999997777665443                         1278899999999999999999


Q ss_pred             cCCceee-eCCeeecHHHHHhhcCCCcccccCcccccCc------EEEeCCCccccCCccccccccccC----CCCeeec
Q psy10674         57 VDLMYFH-YKGNVYCLRDYATMLDIPRCHACDELIFVNE------YTLAENKTFHVKHFCCYECDKELC----NQSYIPV  125 (138)
Q Consensus        57 ~~~~~~~-~~~~~yC~~c~~~~~~~~~C~~C~~~I~~~~------~~~~~~~~~H~~CF~C~~C~~~l~----~~~f~~~  125 (138)
                      .+..|.+ .++++||-.||.+.| +++|+.|+++|++.+      .|+++++.||.+|++|..|+..|+    ++..|..
T Consensus       371 dgipFtvd~~n~v~Cv~dfh~kf-APrCs~C~~PI~P~~G~~etvRvvamdr~fHv~CY~CEDCg~~LS~e~e~qgCyPl  449 (468)
T KOG1701|consen  371 DGIPFTVDSQNNVYCVPDFHKKF-APRCSVCGNPILPRDGKDETVRVVAMDRDFHVNCYKCEDCGLLLSSEEEGQGCYPL  449 (468)
T ss_pred             CCccccccCCCceeeehhhhhhc-CcchhhccCCccCCCCCcceEEEEEccccccccceehhhcCccccccCCCCcceec
Confidence            9988866 789999999999999 799999999999642      344999999999999999999998    5667878


Q ss_pred             CCCCCccCC
Q psy10674        126 TESRPGQDS  134 (138)
Q Consensus       126 ~~~~~y~~~  134 (138)
                      | |.+.|..
T Consensus       450 d-~HllCk~  457 (468)
T KOG1701|consen  450 D-GHLLCKT  457 (468)
T ss_pred             c-Cceeech
Confidence            8 8887765

>KOG1701|consensus

Probab=99.92  E-value=4.6e-27  Score=174.91  Aligned_cols=111  Identities=26%  Similarity=0.518  Sum_probs=101.4

Q ss_pred             ccccccccccCCCeEEEeccccCCCCCCcccCcccccCCccccCCceeeeCCeeecHHHHHhhcCCCcccccCcccccCc
Q psy10674         15 CCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELIFVNE   94 (138)
Q Consensus        15 ~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~~C~~C~~~I~~~~   94 (138)
                      +|.+|++.|..+..-+     .|+++.||..||+|..|++.|.++.||..++++||+.||.+.+  ++|..|+++|++. 
T Consensus       276 iC~~C~K~V~g~~~ac-----~Am~~~fHv~CFtC~~C~r~L~Gq~FY~v~~k~~CE~cyq~tl--ekC~~Cg~~I~d~-  347 (468)
T KOG1701|consen  276 ICAFCHKTVSGQGLAV-----EAMDQLFHVQCFTCRTCRRQLAGQSFYQVDGKPYCEGCYQDTL--EKCNKCGEPIMDR-  347 (468)
T ss_pred             hhhhcCCcccCcchHH-----HHhhhhhcccceehHhhhhhhccccccccCCcccchHHHHHHH--HHHhhhhhHHHHH-
Confidence            7999999999655443     2378899999999999999999999999999999999999986  7999999999764 


Q ss_pred             EEEeCCCccccCCccccccccccCCCCeeecCCCCCccC
Q psy10674         95 YTLAENKTFHVKHFCCYECDKELCNQSYIPVTESRPGQD  133 (138)
Q Consensus        95 ~~~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~~~~~y~~  133 (138)
                      |+.|.|+.||+.||+|..|++.|+|..|++..++++||.
T Consensus       348 iLrA~GkayHp~CF~Cv~C~r~ldgipFtvd~~n~v~Cv  386 (468)
T KOG1701|consen  348 ILRALGKAYHPGCFTCVVCARCLDGIPFTVDSQNNVYCV  386 (468)
T ss_pred             HHHhcccccCCCceEEEEeccccCCccccccCCCceeee
Confidence            667999999999999999999999999999999999995

>KOG2272|consensus

Probab=99.90  E-value=2.8e-26  Score=160.94  Aligned_cols=128  Identities=28%  Similarity=0.475  Sum_probs=107.9

Q ss_pred             eeecCCCcCcCCcccccccccccCCCeEEEecc-------------------------------ccCCCCCCcccCcccc
Q psy10674          2 TLAENKTFHVKHFCCYECDKKVQFENYTGKITQ-------------------------------SQESEVLWHPQCFVCS   50 (138)
Q Consensus         2 ~~a~g~~~h~~~~~C~~C~~~i~~~~~~~~~~~-------------------------------~~~~~~~~H~~Cf~C~   50 (138)
                      |.||+.+|||.||.|..|++.|.+..++-..++                               ...++.+||+.+|+|.
T Consensus        88 ikamnnSwHp~CF~Cd~Cn~~Lad~gf~rnqgr~LC~~Cn~k~Ka~~~g~YvC~KCh~~iD~~~l~fr~d~yH~yHFkCt  167 (332)
T KOG2272|consen   88 IKAMNNSWHPACFRCDLCNKHLADQGFYRNQGRALCRECNQKEKAKGRGRYVCQKCHAHIDEQPLTFRGDPYHPYHFKCT  167 (332)
T ss_pred             HHhhccccCcccchhHHHHHHHhhhhhHhhcchHHhhhhhhhhcccccceeehhhhhhhcccccccccCCCCCccceecc
Confidence            579999999999999999999986444322111                               2356779999999999


Q ss_pred             cCCccccCCceeeeCCeeecHHHHHhhcCCCcccccCcccccCcEEEeCCCccccCCccccccccccCCCCeeecCCCCC
Q psy10674         51 TCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYIPVTESRP  130 (138)
Q Consensus        51 ~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~~~~~  130 (138)
                      .|++.|.. ...+..+.+||.+|+.++- .|.|..|.+||.+ .+|.++|+.||.++|+|+.|.+|+-|-+.|+++ |.+
T Consensus       168 ~C~keL~s-daRevk~eLyClrChD~mg-ipiCgaC~rpIee-rvi~amgKhWHveHFvCa~CekPFlGHrHYEkk-Gla  243 (332)
T KOG2272|consen  168 TCGKELTS-DAREVKGELYCLRCHDKMG-IPICGACRRPIEE-RVIFAMGKHWHVEHFVCAKCEKPFLGHRHYEKK-GLA  243 (332)
T ss_pred             cccccccc-hhhhhccceeccccccccC-CcccccccCchHH-HHHHHhccccchhheeehhcCCcccchhhhhhc-Cch
Confidence            99999954 3556788999999998764 8999999999964 455599999999999999999999999999999 999


Q ss_pred             ccC
Q psy10674        131 GQD  133 (138)
Q Consensus       131 y~~  133 (138)
                      ||.
T Consensus       244 YCe  246 (332)
T KOG2272|consen  244 YCE  246 (332)
T ss_pred             hHH
Confidence            985

>KOG4577|consensus

Probab=99.87  E-value=1.2e-24  Score=155.27  Aligned_cols=114  Identities=26%  Similarity=0.661  Sum_probs=102.1

Q ss_pred             CCcccccccccccCCCeEEEeccccCCCCCCcccCcccccCCccccCCceeeeCCeeecHHHHHhhcCCCcccccCcccc
Q psy10674         12 KHFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELIF   91 (138)
Q Consensus        12 ~~~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~~C~~C~~~I~   91 (138)
                      +-++|+.|.+.|. ++++..+     +++.||..|++|+.|..+|.+ ..|.+++.+||+.+|.++|| .+|..|...|.
T Consensus        32 eip~CagC~q~Il-DrFilKv-----l~R~wHs~CLkCs~C~~qL~d-rCFsR~~s~yCkedFfKrfG-TKCsaC~~GIp  103 (383)
T KOG4577|consen   32 EIPICAGCDQHIL-DRFILKV-----LDRHWHSSCLKCSDCHDQLAD-RCFSREGSVYCKEDFFKRFG-TKCSACQEGIP  103 (383)
T ss_pred             ccccccchHHHHH-HHHHHHH-----HhhhhhhhhcchhhhhhHHHH-HHhhcCCceeehHHHHHHhC-CcchhhcCCCC
Confidence            5688999999998 6676654     466999999999999999966 58999999999999999998 69999999999


Q ss_pred             cCcEEE-eCCCccccCCccccccccccC-CCCeeecCCCCCccC
Q psy10674         92 VNEYTL-AENKTFHVKHFCCYECDKELC-NQSYIPVTESRPGQD  133 (138)
Q Consensus        92 ~~~~~~-~~~~~~H~~CF~C~~C~~~l~-~~~f~~~~~~~~y~~  133 (138)
                      +..+|. |.+.+||.+||.|..|++.|. |+.||+.+|++.-|.
T Consensus       104 PtqVVRkAqd~VYHl~CF~C~iC~R~L~TGdEFYLmeD~rLvCK  147 (383)
T KOG4577|consen  104 PTQVVRKAQDFVYHLHCFACFICKRQLATGDEFYLMEDARLVCK  147 (383)
T ss_pred             hHHHHHHhhcceeehhhhhhHhhhcccccCCeeEEeccceeehh
Confidence            877766 999999999999999999998 999999998888764

>KOG2272|consensus

Probab=99.87  E-value=9.9e-24  Score=148.15  Aligned_cols=130  Identities=25%  Similarity=0.525  Sum_probs=109.9

Q ss_pred             eeecCCCcCcCCcccccccccccCCCeEEEe------------------------cc-ccCCCCCCcccCcccccCCccc
Q psy10674          2 TLAENKTFHVKHFCCYECDKKVQFENYTGKI------------------------TQ-SQESEVLWHPQCFVCSTCDELL   56 (138)
Q Consensus         2 ~~a~g~~~h~~~~~C~~C~~~i~~~~~~~~~------------------------~~-~~~~~~~~H~~Cf~C~~C~~~l   56 (138)
                      |...|..|||-+|+|..|++.|..+...+..                        ++ +.++|..||.++|+|+.|.+|+
T Consensus       152 l~fr~d~yH~yHFkCt~C~keL~sdaRevk~eLyClrChD~mgipiCgaC~rpIeervi~amgKhWHveHFvCa~CekPF  231 (332)
T KOG2272|consen  152 LTFRGDPYHPYHFKCTTCGKELTSDAREVKGELYCLRCHDKMGIPICGACRRPIEERVIFAMGKHWHVEHFVCAKCEKPF  231 (332)
T ss_pred             ccccCCCCCccceecccccccccchhhhhccceeccccccccCCcccccccCchHHHHHHHhccccchhheeehhcCCcc
Confidence            3456889999999999999998753222111                        11 3478899999999999999999


Q ss_pred             cCCceeeeCCeeecHHHHHhhcCCCcccccCcccccCcEEEeCCCccccCCccccccccccC-CCCeeecCCCCCccCC
Q psy10674         57 VDLMYFHYKGNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELC-NQSYIPVTESRPGQDS  134 (138)
Q Consensus        57 ~~~~~~~~~~~~yC~~c~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~l~-~~~f~~~~~~~~y~~~  134 (138)
                      -+-..|++.|.+||+++|.+++| ..|..|+.+| +++++.|.++.|-++||.|+.|++.|. ...|++.| -+|-|..
T Consensus       232 lGHrHYEkkGlaYCe~h~~qLfG-~~CF~C~~~i-~G~vv~al~KawCv~cf~Cs~Cdkkl~~K~Kf~E~D-mkP~CKk  307 (332)
T KOG2272|consen  232 LGHRHYEKKGLAYCETHYHQLFG-NLCFICNRVI-GGDVVSALNKAWCVECFSCSTCDKKLTQKNKFYEFD-MKPVCKK  307 (332)
T ss_pred             cchhhhhhcCchhHHHHHHHHhh-hhheecCCcc-CccHHHHhhhhhccccccccccccccccccceeeec-cchHHHH
Confidence            88889999999999999999998 7999999999 566777999999999999999999998 67788888 8887753

>KOG1044|consensus

Probab=99.86  E-value=1.9e-22  Score=155.02  Aligned_cols=127  Identities=24%  Similarity=0.484  Sum_probs=109.8

Q ss_pred             eeecCCCcCcCCcccccccccccCCCeEEEecc------------------------------------ccCCCCCCccc
Q psy10674          2 TLAENKTFHVKHFCCYECDKKVQFENYTGKITQ------------------------------------SQESEVLWHPQ   45 (138)
Q Consensus         2 ~~a~g~~~h~~~~~C~~C~~~i~~~~~~~~~~~------------------------------------~~~~~~~~H~~   45 (138)
                      +.|+|++||+.||+|..|..+...+..+...++                                    +++++..||..
T Consensus        80 vsa~gktyh~~cf~cs~ck~pf~~g~~vt~~gk~~~c~~c~~~~~~~p~~~~~ps~cagc~~~lk~gq~llald~qwhv~  159 (670)
T KOG1044|consen   80 VSTLGKTYHPKCFSCSTCKSPFKSGDKVTFSGKECLCQTCSQPMPVSPAESYGPSTCAGCGEELKNGQALLALDKQWHVS  159 (670)
T ss_pred             EecccceeccccceecccCCCCCCCCeeeecchhhhhhhhcCcccCCcccccCCccccchhhhhhccceeeeeccceeee
Confidence            579999999999999999999987766543211                                    34788899999


Q ss_pred             CcccccCCccccCCceeeeCCeeecHHHHHhhcCCCcccccCcccccCcEEEeCCCccccCCccccccccccC-CCCeee
Q psy10674         46 CFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELC-NQSYIP  124 (138)
Q Consensus        46 Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~l~-~~~f~~  124 (138)
                      ||+|..|+..|.+ .|...+|.+||+.+|.+.|| -+|..|.+.|.+. ++.|.|++|||.|-+|++|+.+++ |+..|+
T Consensus       160 cfkc~~c~~vL~g-ey~skdg~pyce~dy~~~fg-vkc~~c~~fisgk-vLqag~kh~HPtCARCsRCgqmF~eGEEMYl  236 (670)
T KOG1044|consen  160 CFKCKSCSAVLNG-EYMSKDGVPYCEKDYQAKFG-VKCEECEKFISGK-VLQAGDKHFHPTCARCSRCGQMFGEGEEMYL  236 (670)
T ss_pred             eeehhhhcccccc-eeeccCCCcchhhhhhhhcC-eehHHhhhhhhhh-hhhccCcccCcchhhhhhhccccccchheee
Confidence            9999999999966 59999999999999999998 5999999999665 566999999999999999999998 888888


Q ss_pred             cCCCCCcc
Q psy10674        125 VTESRPGQ  132 (138)
Q Consensus       125 ~~~~~~y~  132 (138)
                      +. ..++.
T Consensus       237 QG-s~iWH  243 (670)
T KOG1044|consen  237 QG-SEIWH  243 (670)
T ss_pred             cc-ccccC
Confidence            86 55554

>KOG1703|consensus

Probab=99.84  E-value=1.1e-21  Score=152.94  Aligned_cols=132  Identities=25%  Similarity=0.559  Sum_probs=114.7

Q ss_pred             CeeecCCCcCcCCcccccccccccCCCeEEEecc--------------------------ccCCCCCCcccCcccccCCc
Q psy10674          1 YTLAENKTFHVKHFCCYECDKKVQFENYTGKITQ--------------------------SQESEVLWHPQCFVCSTCDE   54 (138)
Q Consensus         1 ~~~a~g~~~h~~~~~C~~C~~~i~~~~~~~~~~~--------------------------~~~~~~~~H~~Cf~C~~C~~   54 (138)
                      .+.|+++.||+.++.|..|...|..+.+....++                          +.+++..||++||.|..|++
T Consensus       318 ~i~~~~~~~h~~~~~c~~~~~~~~~~~~~~~~g~~~c~~~~~~~~~p~C~~C~~~i~~~~v~a~~~~wH~~cf~C~~C~~  397 (479)
T KOG1703|consen  318 VIVALGKEWHPEHFSCEVCAIVILDGGPRELDGKILCHECFHAPFRPNCKRCLLPILEEGVCALGRLWHPECFVCADCGK  397 (479)
T ss_pred             eEeeccccccccceeeccccccccCCCccccCCCccHHHHHHHhhCccccccCCchHHhHhhhccCeechhceeeecccC
Confidence            3689999999999999999999886655332111                          23568899999999999999


Q ss_pred             cccCCceeeeCCeeecHHHHHhhcCCCcccccCcccccC-cEEEeCCCccccCCccccccccccCCCCeeecCCCCCccC
Q psy10674         55 LLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELIFVN-EYTLAENKTFHVKHFCCYECDKELCNQSYIPVTESRPGQD  133 (138)
Q Consensus        55 ~l~~~~~~~~~~~~yC~~c~~~~~~~~~C~~C~~~I~~~-~~~~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~~~~~y~~  133 (138)
                      +|....|+..++.+||+.||.++++ .+|..|.++|... ..+.+++..||..||+|..|.+.|.++.|+... ++|+|-
T Consensus       398 ~~~~~~~~~~~~~pyce~~~~~~~~-~~~~~~~~p~~~~~~~ie~~~~~~h~~~F~c~~c~~~l~~~~~~~~~-~~p~c~  475 (479)
T KOG1703|consen  398 PLKNSSFFESDGEPYCEDHYKKLFT-TKCDYCKKPVEFGSRQIEADGSPFHGDCFRCANCMKKLTKKTFFETL-DKPLCQ  475 (479)
T ss_pred             CCCCCcccccCCccchhhhHhhhcc-ccchhccchhHhhhhHhhccCccccccceehhhhhccccCCceeecC-Cccccc
Confidence            9999999999999999999999995 6999999998633 356699999999999999999999999999999 999997


Q ss_pred             C
Q psy10674        134 S  134 (138)
Q Consensus       134 ~  134 (138)
                      +
T Consensus       476 ~  476 (479)
T KOG1703|consen  476 K  476 (479)
T ss_pred             c
Confidence            6

>KOG1044|consensus

Probab=99.75  E-value=1.1e-18  Score=134.52  Aligned_cols=131  Identities=23%  Similarity=0.445  Sum_probs=105.5

Q ss_pred             eeecCCCcCcCCcccccccccccCCCeEEEec----------------cccCCCCCCcccCcccccCCccccCC-ceeee
Q psy10674          2 TLAENKTFHVKHFCCYECDKKVQFENYTGKIT----------------QSQESEVLWHPQCFVCSTCDELLVDL-MYFHY   64 (138)
Q Consensus         2 ~~a~g~~~h~~~~~C~~C~~~i~~~~~~~~~~----------------~~~~~~~~~H~~Cf~C~~C~~~l~~~-~~~~~   64 (138)
                      +.+.++.+|..||+|..|+..|..+.+....+                -+.++++.||+.||.|..|+.++... ..-..
T Consensus        31 lrv~d~~fhi~cf~c~~cg~~la~~gff~k~~~~~ygt~~c~~~~~gevvsa~gktyh~~cf~cs~ck~pf~~g~~vt~~  110 (670)
T KOG1044|consen   31 LRVNDNHFHINCFQCKKCGRNLAEGGFFTKPENRLYGTDDCRAFVEGEVVSTLGKTYHPKCFSCSTCKSPFKSGDKVTFS  110 (670)
T ss_pred             eEeeccccceeeeeccccCCCcccccceecccceeecccchhhhccceeEecccceeccccceecccCCCCCCCCeeeec
Confidence            46778999999999999999998776654321                13468899999999999999999443 33445


Q ss_pred             CCeeecHHHHHhh-------cCCCcccccCcccccCcEEEeCCCccccCCccccccccccCCCCeeecCCCCCccCC
Q psy10674         65 KGNVYCLRDYATM-------LDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYIPVTESRPGQDS  134 (138)
Q Consensus        65 ~~~~yC~~c~~~~-------~~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~~~~~y~~~  134 (138)
                      .....|+.|-.-.       .+...|++|++.|..+..+.|+++.||..||+|..|..+|.++ |+.++ |.|||-+
T Consensus       111 gk~~~c~~c~~~~~~~p~~~~~ps~cagc~~~lk~gq~llald~qwhv~cfkc~~c~~vL~ge-y~skd-g~pyce~  185 (670)
T KOG1044|consen  111 GKECLCQTCSQPMPVSPAESYGPSTCAGCGEELKNGQALLALDKQWHVSCFKCKSCSAVLNGE-YMSKD-GVPYCEK  185 (670)
T ss_pred             chhhhhhhhcCcccCCcccccCCccccchhhhhhccceeeeeccceeeeeeehhhhcccccce-eeccC-CCcchhh
Confidence            5567788776322       2235899999999988888899999999999999999999875 88888 9999965

>KOG1703|consensus

Probab=99.73  E-value=1.5e-18  Score=135.53  Aligned_cols=112  Identities=23%  Similarity=0.492  Sum_probs=99.4

Q ss_pred             cccccccccccCCCeEEEeccccCCCCCCcccCcccccCCccccCCceeeeCCeeecHHHHHhhcCCCcccccCcccccC
Q psy10674         14 FCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELIFVN   93 (138)
Q Consensus        14 ~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~~C~~C~~~I~~~   93 (138)
                      +.|..|++.|....++..      ++..||+++|.|..|+..+....+...+|.+||..|+.+.+ ++.|.+|+++|.++
T Consensus       304 p~c~~c~~~i~~~~~i~~------~~~~~h~~~~~c~~~~~~~~~~~~~~~~g~~~c~~~~~~~~-~p~C~~C~~~i~~~  376 (479)
T KOG1703|consen  304 PLCLSCNQKIRSVKVIVA------LGKEWHPEHFSCEVCAIVILDGGPRELDGKILCHECFHAPF-RPNCKRCLLPILEE  376 (479)
T ss_pred             ccccccccCcccceeEee------ccccccccceeeccccccccCCCccccCCCccHHHHHHHhh-CccccccCCchHHh
Confidence            678999999984355554      46699999999999999998877888999999999999998 79999999999764


Q ss_pred             cEEEeCCCccccCCccccccccccCCCCeeecCCCCCccCC
Q psy10674         94 EYTLAENKTFHVKHFCCYECDKELCNQSYIPVTESRPGQDS  134 (138)
Q Consensus        94 ~~~~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~~~~~y~~~  134 (138)
                       +|.|.++.||++||.|..|+++|.+..|++.+ |.|||..
T Consensus       377 -~v~a~~~~wH~~cf~C~~C~~~~~~~~~~~~~-~~pyce~  415 (479)
T KOG1703|consen  377 -GVCALGRLWHPECFVCADCGKPLKNSSFFESD-GEPYCED  415 (479)
T ss_pred             -HhhhccCeechhceeeecccCCCCCCcccccC-Cccchhh
Confidence             56688999999999999999999999999999 9999975

>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.56  E-value=7.2e-15  Score=83.39  Aligned_cols=58  Identities=31%  Similarity=0.702  Sum_probs=50.6

Q ss_pred             cccccccccCCCeEEEeccccCCCCCCcccCcccccCCccccCCceeeeCCeeecHHHHHhhc
Q psy10674         16 CYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATML   78 (138)
Q Consensus        16 C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~   78 (138)
                      |..|+++|.+++.++..     .+..||++||+|..|+++|.+..++..++++||+.||.++|
T Consensus         1 C~~C~~~I~~~~~~~~~-----~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~f   58 (58)
T PF00412_consen    1 CARCGKPIYGTEIVIKA-----MGKFWHPECFKCSKCGKPLNDGDFYEKDGKPYCKDCYQKRF   58 (58)
T ss_dssp             BTTTSSBESSSSEEEEE-----TTEEEETTTSBETTTTCBTTTSSEEEETTEEEEHHHHHHHT
T ss_pred             CCCCCCCccCcEEEEEe-----CCcEEEccccccCCCCCccCCCeeEeECCEEECHHHHhhhC
Confidence            78999999977776433     46699999999999999998888999999999999998864

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....

>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.50  E-value=1.4e-14  Score=82.17  Aligned_cols=51  Identities=25%  Similarity=0.510  Sum_probs=46.4

Q ss_pred             ccccCcccccCcEE-EeCCCccccCCccccccccccCCCCeeecCCCCCccCC
Q psy10674         83 CHACDELIFVNEYT-LAENKTFHVKHFCCYECDKELCNQSYIPVTESRPGQDS  134 (138)
Q Consensus        83 C~~C~~~I~~~~~~-~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~~~~~y~~~  134 (138)
                      |++|+++|.+++++ .+.|+.||++||+|..|+++|.+..|++.+ |+|||.+
T Consensus         1 C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~-~~~~C~~   52 (58)
T PF00412_consen    1 CARCGKPIYGTEIVIKAMGKFWHPECFKCSKCGKPLNDGDFYEKD-GKPYCKD   52 (58)
T ss_dssp             BTTTSSBESSSSEEEEETTEEEETTTSBETTTTCBTTTSSEEEET-TEEEEHH
T ss_pred             CCCCCCCccCcEEEEEeCCcEEEccccccCCCCCccCCCeeEeEC-CEEECHH
Confidence            78999999988776 499999999999999999999988899999 9999964

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....

>KOG1700|consensus

Probab=99.30  E-value=2.3e-13  Score=95.25  Aligned_cols=115  Identities=24%  Similarity=0.468  Sum_probs=94.5

Q ss_pred             cccccccccccCCCeEEEeccccCCCCCCcccCcccccCCccccCCceeeeCCeeecHHHHHhhcC--------------
Q psy10674         14 FCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLD--------------   79 (138)
Q Consensus        14 ~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~--------------   79 (138)
                      ..|..|++.+...+.+..      .+..||+.||+|..|.+.|....+...++.+||+.++...++              
T Consensus         8 ~kc~~c~k~vy~~e~~~~------~g~~~hk~c~~c~~~~k~l~~~~~~~~e~~~yc~~~~~~~~~~~~~~~~~~~~~~~   81 (200)
T KOG1700|consen    8 DKCNACGKTVYFVEKVQK------DGVDFHKECFKCEKCKKTLTLSGYSEHEGVPYCKNCHVAQFGPKGGGFGKGFQKAG   81 (200)
T ss_pred             chhhhccCcchHHHHHhc------cCcchhhhHHhccccccccccccccccccccccccchHhhhCcccccccccccccC
Confidence            468888888875554442      466999999999999999988889999999999985433310              


Q ss_pred             --------------------------CCcccccCcccccCcEEEeCCCccccCCccccccccccCCCCeeecCCCCCccC
Q psy10674         80 --------------------------IPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYIPVTESRPGQD  133 (138)
Q Consensus        80 --------------------------~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~~~~~y~~  133 (138)
                                                ...|..|++.+.+.+-+...+..||..||+|+.|+..|+...+...+ |.+||+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~c~~c~k~vy~~Ek~~~~~~~~hk~cfrc~~~~~~ls~~~~~~~~-g~l~~~  160 (200)
T KOG1700|consen   82 GLGKDGKSLNESKPNQSAKFQVFAGEKEKCARCQKTVYPLEKVTGNGLEFHKSCFRCTHCGKKLSPKNYAALE-GVLYCK  160 (200)
T ss_pred             CCCcccccccccccccchhHHhhhccccccccccceeeehHHHhhhhhhhhhhheeecccccccCCcchhhcC-Cccccc
Confidence                                      15899999999876666688999999999999999999999999888 999987


Q ss_pred             CC
Q psy10674        134 SP  135 (138)
Q Consensus       134 ~~  135 (138)
                      -.
T Consensus       161 ~~  162 (200)
T KOG1700|consen  161 HH  162 (200)
T ss_pred             hh
Confidence            64

>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3

Probab=99.04  E-value=1.8e-10  Score=59.69  Aligned_cols=37  Identities=30%  Similarity=0.515  Sum_probs=33.0

Q ss_pred             cccccCcccccC-cEEEeCCCccccCCccccccccccC
Q psy10674         82 RCHACDELIFVN-EYTLAENKTFHVKHFCCYECDKELC  118 (138)
Q Consensus        82 ~C~~C~~~I~~~-~~~~~~~~~~H~~CF~C~~C~~~l~  118 (138)
                      +|.+|+++|.+. .++.+.++.||++||+|..|+++|.
T Consensus         1 ~C~~C~~~i~~~~~~~~~~~~~~H~~Cf~C~~C~~~L~   38 (39)
T smart00132        1 KCAGCGKPIRGGELVLRALGKVWHPECFKCSKCGKPLG   38 (39)
T ss_pred             CccccCCcccCCcEEEEeCCccccccCCCCcccCCcCc
Confidence            589999999886 5666899999999999999999986

Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.

>KOG4577|consensus

Probab=98.96  E-value=5.7e-11  Score=85.61  Aligned_cols=77  Identities=18%  Similarity=0.493  Sum_probs=58.5

Q ss_pred             eeecCCCcCcCCcccccccccccCCCeE------EEec-------c--------------ccCCCCCCcccCcccccCCc
Q psy10674          2 TLAENKTFHVKHFCCYECDKKVQFENYT------GKIT-------Q--------------SQESEVLWHPQCFVCSTCDE   54 (138)
Q Consensus         2 ~~a~g~~~h~~~~~C~~C~~~i~~~~~~------~~~~-------~--------------~~~~~~~~H~~Cf~C~~C~~   54 (138)
                      +.++++.||..|++|..|..+|.+.-+.      ...+       +              -.+.+.+||.+||.|.+|++
T Consensus        49 lKvl~R~wHs~CLkCs~C~~qL~drCFsR~~s~yCkedFfKrfGTKCsaC~~GIpPtqVVRkAqd~VYHl~CF~C~iC~R  128 (383)
T KOG4577|consen   49 LKVLDRHWHSSCLKCSDCHDQLADRCFSREGSVYCKEDFFKRFGTKCSACQEGIPPTQVVRKAQDFVYHLHCFACFICKR  128 (383)
T ss_pred             HHHHhhhhhhhhcchhhhhhHHHHHHhhcCCceeehHHHHHHhCCcchhhcCCCChHHHHHHhhcceeehhhhhhHhhhc
Confidence            4688999999999999999998743221      1100       0              01567899999999999999


Q ss_pred             cc-cCCcee-eeCCeeecHHHHHhhc
Q psy10674         55 LL-VDLMYF-HYKGNVYCLRDYATML   78 (138)
Q Consensus        55 ~l-~~~~~~-~~~~~~yC~~c~~~~~   78 (138)
                      +| .+..|| .+|+++.|+++|++..
T Consensus       129 ~L~TGdEFYLmeD~rLvCK~DYE~Ak  154 (383)
T KOG4577|consen  129 QLATGDEFYLMEDARLVCKDDYETAK  154 (383)
T ss_pred             ccccCCeeEEeccceeehhhhHHHHH
Confidence            99 444555 5899999999998753

>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3

Probab=98.64  E-value=3.2e-08  Score=51.04  Aligned_cols=38  Identities=32%  Similarity=0.749  Sum_probs=30.0

Q ss_pred             ccccccccccCCCeEEEeccccCCCCCCcccCcccccCCcccc
Q psy10674         15 CCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLV   57 (138)
Q Consensus        15 ~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~   57 (138)
                      +|..|+++|.+++..+..     .+..||++||+|..|+++|.
T Consensus         1 ~C~~C~~~i~~~~~~~~~-----~~~~~H~~Cf~C~~C~~~L~   38 (39)
T smart00132        1 KCAGCGKPIRGGELVLRA-----LGKVWHPECFKCSKCGKPLG   38 (39)
T ss_pred             CccccCCcccCCcEEEEe-----CCccccccCCCCcccCCcCc
Confidence            488999999866343332     46699999999999999885

Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.

>KOG1700|consensus

Probab=97.84  E-value=3.5e-06  Score=59.15  Aligned_cols=54  Identities=24%  Similarity=0.485  Sum_probs=48.3

Q ss_pred             CcccccCcccccCcEEEeCCCccccCCccccccccccCCCCeeecCCCCCccCCC
Q psy10674         81 PRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYIPVTESRPGQDSP  135 (138)
Q Consensus        81 ~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~~~~~y~~~~  135 (138)
                      .+|.+|++.+...+.+...|..||..||+|..|.+.|....+..++ +.|||+.+
T Consensus         8 ~kc~~c~k~vy~~e~~~~~g~~~hk~c~~c~~~~k~l~~~~~~~~e-~~~yc~~~   61 (200)
T KOG1700|consen    8 DKCNACGKTVYFVEKVQKDGVDFHKECFKCEKCKKTLTLSGYSEHE-GVPYCKNC   61 (200)
T ss_pred             chhhhccCcchHHHHHhccCcchhhhHHhccccccccccccccccc-cccccccc
Confidence            5899999999876666688999999999999999999988899888 99999874

>KOG0490|consensus

Probab=97.67  E-value=2.7e-06  Score=60.63  Aligned_cols=92  Identities=28%  Similarity=0.570  Sum_probs=72.9

Q ss_pred             CCCCcccCcccccCCcccc--CCceeeeCCeeecHHHHHh--hcCCCcccccCcccccCcEEE-eCCCccccCCcccccc
Q psy10674         39 EVLWHPQCFVCSTCDELLV--DLMYFHYKGNVYCLRDYAT--MLDIPRCHACDELIFVNEYTL-AENKTFHVKHFCCYEC  113 (138)
Q Consensus        39 ~~~~H~~Cf~C~~C~~~l~--~~~~~~~~~~~yC~~c~~~--~~~~~~C~~C~~~I~~~~~~~-~~~~~~H~~CF~C~~C  113 (138)
                      +..||..|..|..|...|.  ...+.. ++..||..++..  .++ .+|.+|...|...+.++ +..+. |..||.|..|
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~d~~~~~~~~-~rr~rt~~~~~ql~~ler~f~~~-h~Pd~~~r~~   92 (235)
T KOG0490|consen   16 DRYWHASCLKCAECDNPLGVGDTCFSK-DGSIYCKRDYQREFKFS-KRCARCKFTISQLDELERAFEKV-HLPCFACREC   92 (235)
T ss_pred             cHHHHHHHHhhhhhcchhccCCCcccC-CCcccccccchhhhhcc-ccccCCCCCcCHHHHHHHhhcCC-CcCccchHHH
Confidence            4589999999999999996  444445 999999999987  554 69999999996555444 66676 9999999999


Q ss_pred             ccccC-CCCeeecCCCCCccC
Q psy10674        114 DKELC-NQSYIPVTESRPGQD  133 (138)
Q Consensus       114 ~~~l~-~~~f~~~~~~~~y~~  133 (138)
                      ...+. +..+.++++.+.++.
T Consensus        93 la~~~~~~e~rVqvwFqnrra  113 (235)
T KOG0490|consen   93 LALLLTGDEFRVQVWFQNRRA  113 (235)
T ss_pred             HhhcCCCCeeeeehhhhhhcH
Confidence            88654 778888875566654

>KOG1702|consensus

Probab=97.18  E-value=1.7e-05  Score=55.20  Aligned_cols=57  Identities=28%  Similarity=0.514  Sum_probs=45.6

Q ss_pred             ccccccccccCCCeEEEeccccCCCCCCcccCcccccCCccccCCceeeeCCeeecHHHHHhh
Q psy10674         15 CCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATM   77 (138)
Q Consensus        15 ~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~   77 (138)
                      .|..|++.+.+-+.+..      ++..||..||+|..|+.+|....+...+.++||..+|.+.
T Consensus         6 n~~~cgk~vYPvE~v~c------ldk~whk~cfkce~c~mtlnmKnyKgy~kkpycn~hYpkq   62 (264)
T KOG1702|consen    6 NREDCGKTVYPVEEVKC------LDKVWHKQCFKCEVCGMTLNMKNYKGYDKKPYCNPHYPKQ   62 (264)
T ss_pred             hhhhhccccccHHHHhh------HHHHHHHHhheeeeccCChhhhhccccccCCCcCcccccc
Confidence            35677777765544433      4559999999999999999888888899999999998654

>KOG1702|consensus

Probab=97.15  E-value=4e-05  Score=53.39  Aligned_cols=53  Identities=19%  Similarity=0.341  Sum_probs=44.6

Q ss_pred             CcccccCcccccCcEEEeCCCccccCCccccccccccCCCCeeecCCCCCccCC
Q psy10674         81 PRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYIPVTESRPGQDS  134 (138)
Q Consensus        81 ~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~~~~~y~~~  134 (138)
                      +.|..|++.+.+-+-+.-+++.||.-||+|..|+.+|.-.+|--.+ .+|||+.
T Consensus         5 ~n~~~cgk~vYPvE~v~cldk~whk~cfkce~c~mtlnmKnyKgy~-kkpycn~   57 (264)
T KOG1702|consen    5 CNREDCGKTVYPVEEVKCLDKVWHKQCFKCEVCGMTLNMKNYKGYD-KKPYCNP   57 (264)
T ss_pred             chhhhhccccccHHHHhhHHHHHHHHhheeeeccCChhhhhccccc-cCCCcCc
Confidence            4567888888776666688999999999999999999877776666 8999986

>PF08394 Arc_trans_TRASH: Archaeal TRASH domain; InterPro: IPR013603 This region is found in the C terminus of a number of archaeal transcriptional regulators

Probab=95.17  E-value=0.0074  Score=30.66  Aligned_cols=32  Identities=28%  Similarity=0.668  Sum_probs=23.5

Q ss_pred             ccccCcccccCcEEE-eCCCccccCCcccccccccc
Q psy10674         83 CHACDELIFVNEYTL-AENKTFHVKHFCCYECDKEL  117 (138)
Q Consensus        83 C~~C~~~I~~~~~~~-~~~~~~H~~CF~C~~C~~~l  117 (138)
                      |.-|+++|.+..++. ..++.|+   |.|..|.+.|
T Consensus         1 Cd~CG~~I~~eP~~~k~~~~~y~---fCC~tC~~~f   33 (37)
T PF08394_consen    1 CDYCGGEITGEPIVVKIGNKVYY---FCCPTCLSQF   33 (37)
T ss_pred             CCccCCcccCCEEEEEECCeEEE---EECHHHHHHH
Confidence            677999998776554 7888888   6667776554

It is thought to function as a metal-sensing regulatory module [].

>PF14446 Prok-RING_1: Prokaryotic RING finger family 1

Probab=94.20  E-value=0.036  Score=30.56  Aligned_cols=36  Identities=14%  Similarity=0.471  Sum_probs=26.6

Q ss_pred             CcccccCcccc-cCcEEE--eCCCccccCCc----cccc--cccc
Q psy10674         81 PRCHACDELIF-VNEYTL--AENKTFHVKHF----CCYE--CDKE  116 (138)
Q Consensus        81 ~~C~~C~~~I~-~~~~~~--~~~~~~H~~CF----~C~~--C~~~  116 (138)
                      .+|..|+++|. ++++++  .=+..||.+|+    .|..  |+..
T Consensus         6 ~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~~g~C~~~~c~~~   50 (54)
T PF14446_consen    6 CKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEKAGGCINYSCGTG   50 (54)
T ss_pred             ccChhhCCcccCCCCEEECCCCCCcccHHHHhhCCceEeccCCCC
Confidence            59999999997 345665  56889999988    3665  5544

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=90.79  E-value=0.19  Score=31.24  Aligned_cols=28  Identities=11%  Similarity=0.348  Sum_probs=20.6

Q ss_pred             CcccccCcccccCcEEE-eCCCccccCCc
Q psy10674         81 PRCHACDELIFVNEYTL-AENKTFHVKHF  108 (138)
Q Consensus        81 ~~C~~C~~~I~~~~~~~-~~~~~~H~~CF  108 (138)
                      ..|+.|+++|....++. ..|..+|..|+
T Consensus        79 ~~C~vC~k~l~~~~f~~~p~~~v~H~~C~  107 (109)
T PF10367_consen   79 TKCSVCGKPLGNSVFVVFPCGHVVHYSCI  107 (109)
T ss_pred             CCccCcCCcCCCceEEEeCCCeEEecccc
Confidence            58999999997665555 45666787775

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].

>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454

Probab=90.44  E-value=0.17  Score=33.99  Aligned_cols=50  Identities=16%  Similarity=0.383  Sum_probs=36.2

Q ss_pred             CeeecHHHHHhhcCCCcccccCcccccCcEE---EeCCCccccCCccccccccccC
Q psy10674         66 GNVYCLRDYATMLDIPRCHACDELIFVNEYT---LAENKTFHVKHFCCYECDKELC  118 (138)
Q Consensus        66 ~~~yC~~c~~~~~~~~~C~~C~~~I~~~~~~---~~~~~~~H~~CF~C~~C~~~l~  118 (138)
                      ..-||..|-.+..  ..|+.|+.+|.+..++   ...+..|++--| |..|+++++
T Consensus        27 ~~~fC~kCG~~tI--~~Cp~C~~~IrG~y~v~gv~~~g~~~~~PsY-C~~CGkpyP   79 (158)
T PF10083_consen   27 REKFCSKCGAKTI--TSCPNCSTPIRGDYHVEGVFGLGGHYEAPSY-CHNCGKPYP   79 (158)
T ss_pred             HHHHHHHhhHHHH--HHCcCCCCCCCCceecCCeeeeCCCCCCChh-HHhCCCCCc
Confidence            4569999998887  6999999999765332   144566665432 888888875

The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.

>COG4357 Zinc finger domain containing protein (CHY type) [Function unknown]

Probab=89.39  E-value=0.045  Score=33.66  Aligned_cols=53  Identities=25%  Similarity=0.344  Sum_probs=39.5

Q ss_pred             cccccCcccccCcEEEeCCCccccCCccccccccccCCCCeeecCCCCCccCCC
Q psy10674         82 RCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYIPVTESRPGQDSP  135 (138)
Q Consensus        82 ~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~~~~~y~~~~  135 (138)
                      .|..|...+..-.+....-..+++.+-.|..|.+.|+-..|.+.. .=|||.||
T Consensus        37 aCy~CHdel~~Hpf~p~~~~~~~~~~iiCGvC~~~LT~~EY~~~~-~Cp~C~sp   89 (105)
T COG4357          37 ACYHCHDELEDHPFEPWGLQEFNPKAIICGVCRKLLTRAEYGMCG-SCPYCQSP   89 (105)
T ss_pred             hHHHHHhHHhcCCCccCChhhcCCccEEhhhhhhhhhHHHHhhcC-CCCCcCCC
Confidence            566777666554455455567888888899999888877788777 78888885

>PF13240 zinc_ribbon_2: zinc-ribbon domain

Probab=88.76  E-value=0.26  Score=22.19  Aligned_cols=9  Identities=33%  Similarity=0.704  Sum_probs=4.7

Q ss_pred             ccccCcccc
Q psy10674         83 CHACDELIF   91 (138)
Q Consensus        83 C~~C~~~I~   91 (138)
                      |..|+..|.
T Consensus         2 Cp~CG~~~~   10 (23)
T PF13240_consen    2 CPNCGAEIE   10 (23)
T ss_pred             CcccCCCCC
Confidence            455555553

>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function

Probab=88.01  E-value=0.18  Score=31.50  Aligned_cols=30  Identities=17%  Similarity=0.376  Sum_probs=23.2

Q ss_pred             cccccCcccccCcEEE-eCCCccccCCcccc
Q psy10674         82 RCHACDELIFVNEYTL-AENKTFHVKHFCCY  111 (138)
Q Consensus        82 ~C~~C~~~I~~~~~~~-~~~~~~H~~CF~C~  111 (138)
                      +|..|+++|..++... ..+..-|.+||+=.
T Consensus         4 kC~iCg~~I~~gqlFTF~~kG~VH~~C~~~~   34 (101)
T PF09943_consen    4 KCYICGKPIYEGQLFTFTKKGPVHYECFREK   34 (101)
T ss_pred             EEEecCCeeeecceEEEecCCcEeHHHHHHH
Confidence            7999999999877443 56678898888643

>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional

Probab=87.68  E-value=0.67  Score=26.01  Aligned_cols=50  Identities=20%  Similarity=0.431  Sum_probs=27.1

Q ss_pred             CcccccccccccCCCeEEEeccccCCCCCCcccCcccccCCccccCCceeeeCCeeecHHHHHhhcCCCcccccCc
Q psy10674         13 HFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDE   88 (138)
Q Consensus        13 ~~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~~C~~C~~   88 (138)
                      -.+|..|+.+|.+.+..+.               |.|-.|+..+..          -|..|-.+.. .-+|..|+.
T Consensus         7 ~~~CtSCg~~i~~~~~~~~---------------F~CPnCG~~~I~----------RC~~CRk~~~-~Y~CP~CGF   56 (59)
T PRK14890          7 PPKCTSCGIEIAPREKAVK---------------FLCPNCGEVIIY----------RCEKCRKQSN-PYTCPKCGF   56 (59)
T ss_pred             CccccCCCCcccCCCccCE---------------eeCCCCCCeeEe----------echhHHhcCC-ceECCCCCC
Confidence            3567788877775442211               677777765322          1555543333 246666653

>KOG0490|consensus

Probab=86.69  E-value=0.13  Score=36.43  Aligned_cols=47  Identities=17%  Similarity=0.310  Sum_probs=37.2

Q ss_pred             cCcccccCcEEEeCCCccccCCccccccccccC--CCCeeecCCCCCccCC
Q psy10674         86 CDELIFVNEYTLAENKTFHVKHFCCYECDKELC--NQSYIPVTESRPGQDS  134 (138)
Q Consensus        86 C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~l~--~~~f~~~~~~~~y~~~  134 (138)
                      |+..|.+.....+.+..||..|..|..|...|.  ...|.. + |..||..
T Consensus         2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-g~~~~~~   50 (235)
T KOG0490|consen    2 CGRQILDRYLLRVLDRYWHASCLKCAECDNPLGVGDTCFSK-D-GSIYCKR   50 (235)
T ss_pred             CCccccchHHhhcccHHHHHHHHhhhhhcchhccCCCcccC-C-Ccccccc
Confidence            667777665555679999999999999999997  555555 6 9999875

>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production

Probab=85.62  E-value=0.49  Score=28.95  Aligned_cols=44  Identities=20%  Similarity=0.432  Sum_probs=32.3

Q ss_pred             CCcccCcccccCCccccCCceeeeCCeeecHHHHHhhcCCCcccccCcccccC
Q psy10674         41 LWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELIFVN   93 (138)
Q Consensus        41 ~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~~C~~C~~~I~~~   93 (138)
                      .|-+.--.|..|+..+..      .|.-||..|..+.   -.|+.|++.|.+.
T Consensus        39 Py~~~~~~C~~CK~~v~q------~g~~YCq~CAYkk---GiCamCGKki~dt   82 (90)
T PF10235_consen   39 PYAPYSSKCKICKTKVHQ------PGAKYCQTCAYKK---GICAMCGKKILDT   82 (90)
T ss_pred             cccccCcccccccccccc------CCCccChhhhccc---CcccccCCeeccc
Confidence            565555578888877643      2467999998764   4899999999764

This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].

>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]

Probab=84.39  E-value=1.8  Score=24.29  Aligned_cols=20  Identities=10%  Similarity=0.265  Sum_probs=12.4

Q ss_pred             CcCCcccccccccccCCCeE
Q psy10674         10 HVKHFCCYECDKKVQFENYT   29 (138)
Q Consensus        10 h~~~~~C~~C~~~i~~~~~~   29 (138)
                      +..-.+|..|+..|.+++..
T Consensus         6 ~~~~~~CtSCg~~i~p~e~~   25 (61)
T COG2888           6 MKDPPVCTSCGREIAPGETA   25 (61)
T ss_pred             ccCCceeccCCCEeccCCce
Confidence            33456778888777555443

>PF13248 zf-ribbon_3: zinc-ribbon domain

Probab=84.35  E-value=0.59  Score=21.58  Aligned_cols=9  Identities=33%  Similarity=0.730  Sum_probs=5.0

Q ss_pred             cccccCccc
Q psy10674         82 RCHACDELI   90 (138)
Q Consensus        82 ~C~~C~~~I   90 (138)
                      .|..|+..|
T Consensus         4 ~Cp~Cg~~~   12 (26)
T PF13248_consen    4 FCPNCGAEI   12 (26)
T ss_pred             CCcccCCcC
Confidence            455566554

>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length

Probab=84.26  E-value=0.32  Score=28.31  Aligned_cols=59  Identities=19%  Similarity=0.373  Sum_probs=24.5

Q ss_pred             ccccCCccccCCceeeeCCeeecHHHHHhhcCCCcccccCcccccCcEEEeCCCccccCCccccccccccC
Q psy10674         48 VCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELC  118 (138)
Q Consensus        48 ~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~l~  118 (138)
                      .|..|..+|..     .++..+|..|.........|+-|++++   +++.|-|..    =|.|..|+..++
T Consensus         3 ~CP~C~~~L~~-----~~~~~~C~~C~~~~~~~a~CPdC~~~L---e~LkACGAv----dYFC~~c~gLiS   61 (70)
T PF07191_consen    3 TCPKCQQELEW-----QGGHYHCEACQKDYKKEAFCPDCGQPL---EVLKACGAV----DYFCNHCHGLIS   61 (70)
T ss_dssp             B-SSS-SBEEE-----ETTEEEETTT--EEEEEEE-TTT-SB----EEEEETTEE----EEE-TTTT-EE-
T ss_pred             cCCCCCCccEE-----eCCEEECccccccceecccCCCcccHH---HHHHHhccc----ceeeccCCceee
Confidence            35555555422     235556655543322224777777777   344454421    134666666655

Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.

>smart00504 Ubox Modified RING finger domain

Probab=84.24  E-value=2  Score=23.74  Aligned_cols=49  Identities=16%  Similarity=0.173  Sum_probs=35.2

Q ss_pred             cccccCCccccCCceeeeCCeeecHHHHHhhcC-CCcccccCcccccCcEE
Q psy10674         47 FVCSTCDELLVDLMYFHYKGNVYCLRDYATMLD-IPRCHACDELIFVNEYT   96 (138)
Q Consensus        47 f~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~-~~~C~~C~~~I~~~~~~   96 (138)
                      |.|..|+..+.+ ......|..||+.+..+.+. ...|+.|++++...+++
T Consensus         2 ~~Cpi~~~~~~~-Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~l~   51 (63)
T smart00504        2 FLCPISLEVMKD-PVILPSGQTYERRAIEKWLLSHGTDPVTGQPLTHEDLI   51 (63)
T ss_pred             cCCcCCCCcCCC-CEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCChhhce
Confidence            578888888865 45557789999988865431 24799999888655544

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[]

Probab=83.94  E-value=0.44  Score=23.98  Aligned_cols=24  Identities=17%  Similarity=0.135  Sum_probs=15.2

Q ss_pred             cccccccccCCCCeeecCCCCCccCCCCC
Q psy10674        109 CCYECDKELCNQSYIPVTESRPGQDSPGS  137 (138)
Q Consensus       109 ~C~~C~~~l~~~~f~~~~~~~~y~~~~~~  137 (138)
                      .|..|+..    .|...+ |+.||++.++
T Consensus        10 ~C~~C~~~----~~~~~d-G~~yC~~cG~   33 (36)
T PF11781_consen   10 PCPVCGSR----WFYSDD-GFYYCDRCGH   33 (36)
T ss_pred             cCCCCCCe----EeEccC-CEEEhhhCce
Confidence            37777643    344444 9999987653

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=83.44  E-value=0.9  Score=26.00  Aligned_cols=49  Identities=14%  Similarity=0.463  Sum_probs=22.2

Q ss_pred             cccccCCccccCCceeeeCCeeecHHHHHhhcCCCcccccCcccccCcEE
Q psy10674         47 FVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELIFVNEYT   96 (138)
Q Consensus        47 f~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~~C~~C~~~I~~~~~~   96 (138)
                      .+|+.|...|........=.-++|..|-.+.+| ..|+.|+.|--..++.
T Consensus         8 LrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~-~~CPvC~~Paw~qD~~   56 (65)
T PF14835_consen    8 LRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG-SECPVCHTPAWIQDIQ   56 (65)
T ss_dssp             TS-SSS-S--SS-B---SSS--B-TTTGGGGTT-TB-SSS--B-S-SS--
T ss_pred             cCCcHHHHHhcCCceeccCccHHHHHHhHHhcC-CCCCCcCChHHHHHHH
Confidence            567888777754323344556788888877776 5799999887655543

>PF10886 DUF2685: Protein of unknown function (DUF2685); InterPro: IPR024362 This is a family of uncharacterised bacteriophage proteins

Probab=81.33  E-value=1.4  Score=24.24  Aligned_cols=26  Identities=19%  Similarity=0.194  Sum_probs=19.4

Q ss_pred             CcccccCcccccCcEEEeCCCccccC
Q psy10674         81 PRCHACDELIFVNEYTLAENKTFHVK  106 (138)
Q Consensus        81 ~~C~~C~~~I~~~~~~~~~~~~~H~~  106 (138)
                      .+|..|++||.+...+...+..-|+.
T Consensus         2 ~~CvVCKqpi~~a~~v~T~~G~VH~g   27 (54)
T PF10886_consen    2 EICVVCKQPIDDALVVETESGPVHPG   27 (54)
T ss_pred             CeeeeeCCccCcceEEEcCCCccCcH
Confidence            48999999998766665666677763

Their function in unknown.

>PF02069 Metallothio_Pro: Prokaryotic metallothionein; InterPro: IPR000518 Metallothioneins (MT) are small proteins that bind heavy metals, such as zinc, copper, cadmium and nickel

Probab=81.24  E-value=0.93  Score=24.79  Aligned_cols=24  Identities=13%  Similarity=0.207  Sum_probs=9.7

Q ss_pred             ccccccccCCCCeeecCCCCCccCC
Q psy10674        110 CYECDKELCNQSYIPVTESRPGQDS  134 (138)
Q Consensus       110 C~~C~~~l~~~~f~~~~~~~~y~~~  134 (138)
                      |..|...++...=+.++ ||.||+.
T Consensus        10 C~~C~C~V~~~~Ai~~d-Gk~YCS~   33 (52)
T PF02069_consen   10 CPSCSCVVSEEEAIQKD-GKYYCSE   33 (52)
T ss_dssp             STT----B-TTTSEESS-S-EESSH
T ss_pred             CCCCEeEECchHhHHhC-CEeeecH
Confidence            44555555544445555 6666653

They have a high content of cysteine residues that bind the metal ions through clusters of thiolate bonds [, , ]. An empirical classification into three classes was proposed by Kojima [], with class III MTs including atypical polypeptides composed of gamma-glutamylcysteinyl units. Class I and class II MTs (the proteinaceous sequences) have now been grouped into families of phylogenetically-related and thus alignable sequences. The MT superfamily is subdivided into families, subfamilies, subgroups, and isolated isoforms and alleles. The metallothionein superfamily comprises all polypeptides that resemble equine renal metallothionein in several respects [], e.g., low molecular weight; high metal content; amino acid composition with high Cys and low aromatic residue content; unique sequence with characteristic distribution of cysteines, and spectroscopic manifestations indicative of metal thiolate clusters. A MT family subsumes MTs that share particular sequence-specific features and are thought to be evolutionarily related. Fifteen MT families have been characterised, each family being identified by its number and its taxonomic range. Family 14 consists of prokaryota MTs. Its members are recognised by the sequence pattern K-C-A-C-x(2)-C-L-C.The taxonomic range of the members extends to cyanobacteria. Known characteristics are: 53 to 56 AAs; 9 conserved Cys; one conserved tyrosine residue; one conserved histidine residue; contain other unusual residues. ; GO: 0046872 metal ion binding; PDB: 1JJD_A.

>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A

Probab=80.19  E-value=2.1  Score=25.37  Aligned_cols=43  Identities=14%  Similarity=0.306  Sum_probs=15.4

Q ss_pred             ccccCCccc----cCCceee--eCCeeecHHHHH--hhcCCCcccccCccc
Q psy10674         48 VCSTCDELL----VDLMYFH--YKGNVYCLRDYA--TMLDIPRCHACDELI   90 (138)
Q Consensus        48 ~C~~C~~~l----~~~~~~~--~~~~~yC~~c~~--~~~~~~~C~~C~~~I   90 (138)
                      .|.+|+..+    .+..|..  .=+.+.|+.||.  ..-|...|.+|+.+-
T Consensus        11 iCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~y   61 (80)
T PF14569_consen   11 ICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRY   61 (80)
T ss_dssp             B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B-
T ss_pred             ccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCc
Confidence            456665554    1222222  345678898884  344567899998543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	138
2xqn_T	126	Complex Of The 2nd And 3rd Lim Domains Of Tes With		4e-11
2dfy_X	195	Crystal Structure Of A Cyclized Protein Fusion Of L		3e-05
1rut_X	188	Complex Of Lmo4 Lim Domains 1 And 2 With The Ldb1 L		3e-05

>pdb|2XQN|T Chain T, Complex Of The 2nd And 3rd Lim Domains Of Tes With The Evh1 Domain Of Mena And The N-Terminal Domain Of Actin-Like Protein Arp7a Length = 126

Iteration: 1
 Score = 63.5 bits (153), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 27/47 (57%), Positives = 35/47 (74%)
Query: 81  PRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYIPVTE 127
           PRC  CDELIF NEYT AEN+ +H+KHFCC++CD  L  + Y+ V +
Sbjct: 4   PRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVMVND 50

>pdb|2DFY|X Chain X, Crystal Structure Of A Cyclized Protein Fusion Of Lmo4 Lim Domains 1 And 2 With The Lim Interacting Domain Of Ldb1 Length = 195

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 42  WHPQCFVCSTCDELLVDLMYFHY--KGNVYCLRDYATML-DIPRCHACDELIFVNEYTL- 97
           WH +C  CS+C   L D+    Y   G + C  DY  +  +   C AC + I  +E  + 
Sbjct: 26  WHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMR 85
Query: 98  AENKTFHVKHFCCYECDKEL 117
           A+   +H+K F C  C   L
Sbjct: 86  AQGNVYHLKCFTCSTCRNRL 105

>pdb|1RUT|X Chain X, Complex Of Lmo4 Lim Domains 1 And 2 With The Ldb1 Lid Domain Length = 188

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 42  WHPQCFVCSTCDELLVDLMYFHY--KGNVYCLRDYATML-DIPRCHACDELIFVNEYTL- 97
           WH +C  CS+C   L D+    Y   G + C  DY  +  +   C AC + I  +E  + 
Sbjct: 28  WHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMR 87
Query: 98  AENKTFHVKHFCCYECDKEL 117
           A+   +H+K F C  C   L
Sbjct: 88  AQGNVYHLKCFTCSTCRNRL 107

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	138
2cup_A	101	Skeletal muscle LIM-protein 1; four and half LIM d	2e-17
2cup_A	101	Skeletal muscle LIM-protein 1; four and half LIM d	2e-05
2jtn_A	182	LIM domain-binding protein 1, LIM/homeobox protein	1e-14
2jtn_A	182	LIM domain-binding protein 1, LIM/homeobox protein	6e-06
2rgt_A	169	Fusion of LIM/homeobox protein LHX3, linker, INSU	1e-14
2rgt_A	169	Fusion of LIM/homeobox protein LHX3, linker, INSU	3e-05
2xjy_A	131	Rhombotin-2; oncoprotein, T-cell leukemia, proto-o	2e-13
2xqn_T	126	Testin, TESS; metal-binding protein, cytoskeleton,	3e-13
2xqn_T	126	Testin, TESS; metal-binding protein, cytoskeleton,	7e-12
2xqn_T	126	Testin, TESS; metal-binding protein, cytoskeleton,	4e-07
1rut_X	188	Flinc4, fusion protein of LMO4 protein and LIM dom	8e-13
1rut_X	188	Flinc4, fusion protein of LMO4 protein and LIM dom	1e-04
2cuq_A	80	Four and A half LIM domains 3; structural genomics	3e-12
2cuq_A	80	Four and A half LIM domains 3; structural genomics	3e-05
1x63_A	82	Skeletal muscle LIM-protein 1; LIM domain, four an	1e-10
1x63_A	82	Skeletal muscle LIM-protein 1; LIM domain, four an	8e-05
2dar_A	90	PDZ and LIM domain protein 5; enigma homolog prote	2e-10
2dar_A	90	PDZ and LIM domain protein 5; enigma homolog prote	2e-06
1x64_A	89	Alpha-actinin-2 associated LIM protein; LIM domain	2e-09
1x64_A	89	Alpha-actinin-2 associated LIM protein; LIM domain	2e-06
1b8t_A	192	Protein (CRP1); LIM domain, muscle differentiation	3e-09
1b8t_A	192	Protein (CRP1); LIM domain, muscle differentiation	5e-05
1b8t_A	192	Protein (CRP1); LIM domain, muscle differentiation	3e-04
1b8t_A	192	Protein (CRP1); LIM domain, muscle differentiation	4e-04
1x62_A	79	C-terminal LIM domain protein 1; PDZ and LIM domai	6e-09
1x62_A	79	C-terminal LIM domain protein 1; PDZ and LIM domai	1e-05
2cu8_A	76	Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein	7e-09
2cu8_A	76	Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein	5e-04
1wyh_A	72	SLIM 2, skeletal muscle LIM-protein 2; structural	1e-08
1wyh_A	72	SLIM 2, skeletal muscle LIM-protein 2; structural	7e-06
1iml_A	76	CRIP, cysteine rich intestinal protein; metal-bind	1e-08
1iml_A	76	CRIP, cysteine rich intestinal protein; metal-bind	8e-04
1nyp_A	66	Pinch protein; LIM domain, protein recognition, ce	2e-08
1nyp_A	66	Pinch protein; LIM domain, protein recognition, ce	4e-07
1x3h_A	80	Leupaxin; paxillin family, protein-protein interac	3e-08
1x3h_A	80	Leupaxin; paxillin family, protein-protein interac	4e-06
1x4k_A	72	Skeletal muscle LIM-protein 3; LIM domain, structu	4e-08
1x4k_A	72	Skeletal muscle LIM-protein 3; LIM domain, structu	9e-06
2d8z_A	70	Four and A half LIM domains 2; skeletal muscle LIM	5e-08
2d8z_A	70	Four and A half LIM domains 2; skeletal muscle LIM	2e-05
1x61_A	72	Thyroid receptor interacting protein 6; LIM domain	1e-07
1x61_A	72	Thyroid receptor interacting protein 6; LIM domain	1e-05
2cur_A	69	Skeletal muscle LIM-protein 1; four and A half LIM	1e-07
2cur_A	69	Skeletal muscle LIM-protein 1; four and A half LIM	6e-06
2egq_A	77	FHL1 protein; LIM domain, four and A half LIM doma	1e-07
2egq_A	77	FHL1 protein; LIM domain, four and A half LIM doma	3e-04
2d8x_A	70	Protein pinch; LIM domain, pinch protein, structur	1e-06
2d8x_A	70	Protein pinch; LIM domain, pinch protein, structur	1e-05
1g47_A	77	Pinch protein; LIM domain, Zn finger, cell adhesio	2e-06
1g47_A	77	Pinch protein; LIM domain, Zn finger, cell adhesio	2e-05
3f6q_B	72	LIM and senescent cell antigen-like-containing dom	5e-06
3f6q_B	72	LIM and senescent cell antigen-like-containing dom	3e-05
1x6a_A	81	LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc fi	5e-06
2ehe_A	82	Four and A half LIM domains 3; FHL-3, skeletal mus	6e-06
2ehe_A	82	Four and A half LIM domains 3; FHL-3, skeletal mus	8e-05
2co8_A	82	NEDD9 interacting protein with calponin homology a	8e-06
1a7i_A	81	QCRP2 (LIM1); LIM domain containing proteins, meta	1e-05
1a7i_A	81	QCRP2 (LIM1); LIM domain containing proteins, meta	7e-05
2dlo_A	81	Thyroid receptor-interacting protein 6; LIM domain	2e-05
2dlo_A	81	Thyroid receptor-interacting protein 6; LIM domain	1e-04
1v6g_A	81	Actin binding LIM protein 2; LIM domain, zinc bind	2e-05
1m3v_A	122	FLIN4, fusion of the LIM interacting domain of LDB	3e-05
2d8y_A	91	Eplin protein; LIM domain, epithelial protein LOST	3e-05
2d8y_A	91	Eplin protein; LIM domain, epithelial protein LOST	5e-04
1x4l_A	72	Skeletal muscle LIM-protein 3; LIM domain, structu	4e-05
1x4l_A	72	Skeletal muscle LIM-protein 3; LIM domain, structu	4e-04
2l3k_A	123	Rhombotin-2, linker, LIM domain-binding protein 1;	7e-05
1x68_A	76	FHL5 protein; four-and-A-half LIM protein 5, zinc	7e-05
1x68_A	76	FHL5 protein; four-and-A-half LIM protein 5, zinc	1e-04
2l4z_A	123	DNA endonuclease RBBP8, LIM domain transcription L	9e-05
2l4z_A	123	DNA endonuclease RBBP8, LIM domain transcription L	4e-04
2dj7_A	80	Actin-binding LIM protein 3; LIM domain, Zn bindin	1e-04
2dj7_A	80	Actin-binding LIM protein 3; LIM domain, Zn bindin	6e-04
2cor_A	79	Pinch protein; LIM domain, particularly interestin	3e-04
2cor_A	79	Pinch protein; LIM domain, particularly interestin	7e-04

>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 Length = 101

 Score = 71.3 bits (175), Expect = 2e-17
 Identities = 20/99 (20%), Positives = 33/99 (33%), Gaps = 7/99 (7%)

Query: 16  CYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYA 75
           C EC K +  ++              WH  CF C+ C   L +  +      + C +   
Sbjct: 8   CVECRKPIGADSKEVHY-----KNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCT- 61

Query: 76  TMLDIPRCHACDELIFVNE-YTLAENKTFHVKHFCCYEC 113
           T  D P+C  C + I   +     +   +H   F     
Sbjct: 62  TREDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFSGPSS 100

>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 Length = 101

 Score = 40.1 bits (94), Expect = 2e-05
 Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 81  PRCHACDELIFVNEYTL-AENKTFHVKHFCCYECDKELCNQSYI 123
             C  C + I  +   +  +N+ +H   F C +C   L N++++
Sbjct: 6   SGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFV 49

>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus} Length = 182

 Score = 66.1 bits (161), Expect = 1e-14
 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 3/78 (3%)

Query: 42  WHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELIFVNEYTL-AEN 100
           WH +C  CS C   L +   F    +VYC  D+       +C AC   I   +    A++
Sbjct: 83  WHSKCLKCSDCHVPLAE-RCFSRGESVYCKDDFFKRFG-TKCAACQLGIPPTQVVRRAQD 140

Query: 101 KTFHVKHFCCYECDKELC 118
             +H+  F C  C ++L 
Sbjct: 141 FVYHLHCFACVVCKRQLA 158

>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus} Length = 182

 Score = 42.6 bits (100), Expect = 6e-06
 Identities = 14/79 (17%), Positives = 26/79 (32%), Gaps = 1/79 (1%)

Query: 44  PQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTF 103
            +        +           G+   +    T  +IP C  CD+ I       A ++ +
Sbjct: 25  ERLITRLENTQFDAANGIDDEGGSGGHMGSGGTP-EIPMCAGCDQHILDRFILKALDRHW 83

Query: 104 HVKHFCCYECDKELCNQSY 122
           H K   C +C   L  + +
Sbjct: 84  HSKCLKCSDCHVPLAERCF 102

>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A Length = 169

 Score = 65.6 bits (160), Expect = 1e-14
 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 3/78 (3%)

Query: 42  WHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELIFVNEYTL-AEN 100
           WH +C  CS C   L +   F    +VYC  D+       +C AC   I   +    A++
Sbjct: 29  WHSKCLKCSDCHVPLAE-RCFSRGESVYCKDDFFKRFG-TKCAACQLGIPPTQVVRRAQD 86

Query: 101 KTFHVKHFCCYECDKELC 118
             +H+  F C  C ++L 
Sbjct: 87  FVYHLHCFACVVCKRQLA 104

>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A Length = 169

 Score = 40.6 bits (95), Expect = 3e-05
 Identities = 12/49 (24%), Positives = 21/49 (42%)

Query: 75  ATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYI 123
            +  +IP C  CD+ I       A ++ +H K   C +C   L  + + 
Sbjct: 1   GSTPEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCFS 49

>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A Length = 131

 Score = 61.7 bits (150), Expect = 2e-13
 Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 4/93 (4%)

Query: 42  WHPQCFVCSTCDELLVDLMYFHY--KGNVYCLRDYATMLDI-PRCHACDELIFVNEYTL- 97
           WH  C  C  C   L ++    Y   G   C RDY  +      C +CD+ I   E T+ 
Sbjct: 25  WHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMR 84

Query: 98  AENKTFHVKHFCCYECDKELCNQSYIPVTESRP 130
            ++K +H++ F C  C K  C      +  S  
Sbjct: 85  VKDKVYHLECFKCAACQKHFCVGDRYLLINSDI 117

>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens} Length = 126

 Score = 61.3 bits (149), Expect = 3e-13
 Identities = 23/87 (26%), Positives = 32/87 (36%), Gaps = 4/87 (4%)

Query: 42  WHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELIFVNEYTL-AEN 100
           WH + F C  CD +L   +Y        C   Y        C  C   I      +   N
Sbjct: 26  WHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNH-AVVCQGCHNAIDPEVQRVTYNN 84

Query: 101 KTFH--VKHFCCYECDKELCNQSYIPV 125
            ++H   + F C  C K L  Q ++PV
Sbjct: 85  FSWHASTECFLCSCCSKCLIGQKFMPV 111

>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens} Length = 126

 Score = 57.4 bits (139), Expect = 7e-12
 Identities = 26/45 (57%), Positives = 34/45 (75%)

Query: 79  DIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYI 123
           + PRC  CDELIF NEYT AEN+ +H+KHFCC++CD  L  + Y+
Sbjct: 2   EKPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYV 46

>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens} Length = 126

 Score = 45.1 bits (107), Expect = 4e-07
 Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 30/104 (28%)

Query: 1   YTLAENKTFHVKHFCCYECDKKVQFENY----------------------------TGKI 32
           YT AEN+ +H+KHFCC++CD  +  E Y                              ++
Sbjct: 18  YTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNAIDPEV 77

Query: 33  TQSQESEVLWHP--QCFVCSTCDELLVDLMYFHYKGNVYCLRDY 74
            +   +   WH   +CF+CS C + L+   +   +G V+C  + 
Sbjct: 78  QRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVEC 121

>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B Length = 188

 Score = 61.2 bits (148), Expect = 8e-13
 Identities = 24/93 (25%), Positives = 36/93 (38%), Gaps = 4/93 (4%)

Query: 42  WHPQCFVCSTCDELLVDLM--YFHYKGNVYCLRDYATMLDI-PRCHACDELIFVNEYTL- 97
           WH +C  CS+C   L D+    +   G + C  DY  +      C AC + I  +E  + 
Sbjct: 28  WHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMR 87

Query: 98  AENKTFHVKHFCCYECDKELCNQSYIPVTESRP 130
           A+   +H+K F C  C   L             
Sbjct: 88  AQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSL 120

>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B Length = 188

 Score = 38.8 bits (90), Expect = 1e-04
 Identities = 10/44 (22%), Positives = 15/44 (34%)

Query: 78  LDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQS 121
           L   RC  C   I       A +  +H +   C  C  +L +  
Sbjct: 3   LSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIG 46

>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 80

 Score = 57.3 bits (139), Expect = 3e-12
 Identities = 11/58 (18%), Positives = 19/58 (32%), Gaps = 2/58 (3%)

Query: 66  GNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYI 123
            +      Y      PRC  C + +     T   ++ +H +   C  C   L  Q + 
Sbjct: 2   SSGSSGPCYENKF-APRCARCSKTLTQGGVT-YRDQPWHRECLVCTGCQTPLAGQQFT 57

>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 80

 Score = 39.2 bits (92), Expect = 3e-05
 Identities = 9/36 (25%), Positives = 16/36 (44%)

Query: 42 WHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATM 77
          WH +C VC+ C   L    +     + YC+  +  +
Sbjct: 37 WHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFGEL 72

>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 82

 Score = 53.5 bits (129), Expect = 1e-10
 Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 2/60 (3%)

Query: 66  GNVYCLRDYATMLDIPRCHACDELIFVNE-YTLAENKTFHVKHFCCYECDKELCNQSYIP 124
            +    +        P+C  C + I   +     +   +H   F C  C + +   S+ P
Sbjct: 2   SSGSSGKCTTRED-SPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFP 60

>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 82

 Score = 37.7 bits (88), Expect = 8e-05
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query: 42 WHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDY 74
          WH  CF CS C +++    +F    + YC+  +
Sbjct: 39 WHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCH 71

>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 90

 Score = 53.2 bits (128), Expect = 2e-10
 Identities = 11/63 (17%), Positives = 22/63 (34%), Gaps = 1/63 (1%)

Query: 61  YFHYKGNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQ 120
                  V            P C  C+++I    + +A  K++H + F C  C   +   
Sbjct: 6   SGDQDTLVQRAEHIPAGKRTPMCAHCNQVI-RGPFLVALGKSWHPEEFNCAHCKNTMAYI 64

Query: 121 SYI 123
            ++
Sbjct: 65  GFV 67

>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 90

 Score = 42.4 bits (100), Expect = 2e-06
 Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 7/63 (11%)

Query: 15 CCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDY 74
           C  C++ +      G    +      WHP+ F C+ C   +  + +   KG +YC   Y
Sbjct: 27 MCAHCNQVI-----RGPFLVALGKS--WHPEEFNCAHCKNTMAYIGFVEEKGALYCELCY 79

Query: 75 ATM 77
             
Sbjct: 80 EKF 82

>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3 Length = 89

 Score = 50.2 bits (120), Expect = 2e-09
 Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 8/71 (11%)

Query: 15 CCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDY 74
           C +C   +      G + ++++     HP+CFVC+ C+  L    YF  +G +YC    
Sbjct: 27 LCDKCGSGI-----VGAVVKARDK--YRHPECFVCADCNLNLKQKGYFFVEGELYCETHA 79

Query: 75 ATMLDIPRCHA 85
                     
Sbjct: 80 RARTS-GPSSG 89

>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3 Length = 89

 Score = 42.5 bits (100), Expect = 2e-06
 Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 80  IPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSY 122
           +P C  C   I V     A +K  H + F C +C+  L  + Y
Sbjct: 25  MPLCDKCGSGI-VGAVVKARDKYRHPECFVCADCNLNLKQKGY 66

>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A Length = 192

 Score = 51.9 bits (124), Expect = 3e-09
 Identities = 17/136 (12%), Positives = 31/136 (22%), Gaps = 16/136 (11%)

Query: 4   AENKTFHVKHFCCYECDKKVQFENYTGK---------------ITQSQESEVLWHPQCFV 48
            E  +FH   F C  C K +                            +           
Sbjct: 25  CEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGKGKGMGAGTLSTDK 84

Query: 49  CSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHF 108
             +      +                        C  C + ++  E  +   K++H   F
Sbjct: 85  GESLGIKYEEGQSHRPTNPNASRMAQKVG-GSDGCPRCGQAVYAAEKVIGAGKSWHKSCF 143

Query: 109 CCYECDKELCNQSYIP 124
            C +C K L + +   
Sbjct: 144 RCAKCGKSLESTTLAD 159

>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A Length = 192

 Score = 40.0 bits (93), Expect = 5e-05
 Identities = 11/42 (26%), Positives = 18/42 (42%)

Query: 81  PRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSY 122
            +C  C + ++  E    E  +FH   F C  C K L + + 
Sbjct: 8   KKCGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTV 49

>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A Length = 192

 Score = 37.7 bits (87), Expect = 3e-04
 Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 1/47 (2%)

Query: 42  WHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDE 88
           WH  CF C+ C + L         G +YC   YA     P+     +
Sbjct: 138 WHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFG-PKGFGFGQ 183

>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A Length = 192

 Score = 37.3 bits (86), Expect = 4e-04
 Identities = 18/115 (15%), Positives = 28/115 (24%), Gaps = 19/115 (16%)

Query: 16  CYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYA 75
           C  C K V    Y  +  Q + S   +H  CF+C  C + L       +   +YC   Y 
Sbjct: 10  CGVCQKAV----YFAEEVQCEGS--SFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYG 63

Query: 76  TMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYIPVTESRP 130
                P+                      +          +         T    
Sbjct: 64  KKYG-PKGKGK------------GMGAGTLSTDKGESLGIKYEEGQSHRPTNPNA 105

>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 79

 Score = 48.6 bits (116), Expect = 6e-09
 Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 1/44 (2%)

Query: 42 WHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHA 85
           HP+C+VC+ C   L    +F  +  +YC +     +       
Sbjct: 37 RHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHARERVS-GPSSG 79

>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 79

 Score = 40.1 bits (94), Expect = 1e-05
 Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 1/43 (2%)

Query: 80  IPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSY 122
           +P C  C   I V  +    ++  H + + C +C   L  + +
Sbjct: 15  LPMCDKCGTGI-VGVFVKLRDRHRHPECYVCTDCGTNLKQKGH 56

>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 76

 Score = 48.5 bits (116), Expect = 7e-09
 Identities = 10/43 (23%), Positives = 17/43 (39%)

Query: 81  PRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYI 123
            +C  CD+ ++  E   +  K +H     C  C K L    + 
Sbjct: 10  SKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHA 52

>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 76

 Score = 35.5 bits (82), Expect = 5e-04
 Identities = 15/59 (25%), Positives = 22/59 (37%), Gaps = 6/59 (10%)

Query: 16 CYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDY 74
          C +CDK V    Y  +   S      WH  C  C  C + L    +  + G  +C +  
Sbjct: 12 CPKCDKTV----YFAEKVSSLG--KDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPC 64

>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 72

 Score = 47.8 bits (114), Expect = 1e-08
 Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 81  PRCHACDELIFVNE-YTLAENKTFHVKHFCCYECDKELCNQSYIP 124
             C AC E +           +T+H   F C  C++ L ++S++P
Sbjct: 6   SGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVP 50

>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 72

 Score = 40.4 bits (95), Expect = 7e-06
 Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 5/60 (8%)

Query: 15 CCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDY 74
           C  C + V       +  +       WH  CF+CS C++ L    +   KG  YC+  Y
Sbjct: 7  GCSACGETVMP---GSRKLEYGGQT--WHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCY 61

>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3 Length = 76

 Score = 47.7 bits (114), Expect = 1e-08
 Identities = 11/43 (25%), Positives = 20/43 (46%)

Query: 81  PRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYI 123
           P+C  CD+ ++  E   +  K +H     C +C K L +  + 
Sbjct: 1   PKCPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHA 43

>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3 Length = 76

 Score = 35.0 bits (81), Expect = 8e-04
 Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 6/71 (8%)

Query: 16 CYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYA 75
          C +CDK+V    Y  +   S      WH  C  C  C + L    +  ++G  YC     
Sbjct: 3  CPKCDKEV----YFAERVTSLGK--DWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCY 56

Query: 76 TMLDIPRCHAC 86
          + +  P+    
Sbjct: 57 SAMFGPKGFGR 67

>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B Length = 66

 Score = 46.9 bits (112), Expect = 2e-08
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 81  PRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYI 123
           P C AC   I       A  K +HV+HF C +C+K      + 
Sbjct: 6   PICGACRRPI-EGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHY 47

>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B Length = 66

 Score = 43.4 bits (103), Expect = 4e-07
 Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 7/63 (11%)

Query: 15 CCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDY 74
           C  C + +      G++  +   +  WH + FVC+ C++  +   ++  KG  YC   Y
Sbjct: 7  ICGACRRPI-----EGRVVNAMGKQ--WHVEHFVCAKCEKPFLGHRHYERKGLAYCETHY 59

Query: 75 ATM 77
            +
Sbjct: 60 NQL 62

>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 80

 Score = 47.0 bits (112), Expect = 3e-08
 Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 2/58 (3%)

Query: 66  GNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYI 123
            +    +D+  M   P+C  C+  + +  Y  A +  +H + F C +C       S+ 
Sbjct: 2   SSGSSGKDFLAMF-SPKCGGCNRPV-LENYLSAMDTVWHPECFVCGDCFTSFSTGSFF 57

>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 80

 Score = 41.6 bits (98), Expect = 4e-06
 Identities = 12/36 (33%), Positives = 15/36 (41%)

Query: 42 WHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATM 77
          WHP+CFVC  C        +F   G  +C   Y   
Sbjct: 37 WHPECFVCGDCFTSFSTGSFFELDGRPFCELHYHHR 72

>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 72

 Score = 46.6 bits (111), Expect = 4e-08
 Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 81  PRCHACDELIFVNEYTL-AENKTFHVKHFCCYECDKELCNQSYIP 124
             C  C + I      +  +  ++H   F C+ C + +  +S+IP
Sbjct: 6   SGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIP 50

>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 72

 Score = 40.1 bits (94), Expect = 9e-06
 Identities = 8/33 (24%), Positives = 14/33 (42%)

Query: 42 WHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDY 74
          WH  CF+C  C + +    +       +C+  Y
Sbjct: 29 WHETCFICHRCQQPIGTKSFIPKDNQNFCVPCY 61

>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 70

 Score = 46.2 bits (110), Expect = 5e-08
 Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 81  PRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYI 123
             C  C + I     T    + +H + F C  C K+L  Q + 
Sbjct: 6   SGCVQCKKPITTGGVT-YREQPWHKECFVCTACRKQLSGQRFT 47

>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 70

 Score = 39.2 bits (92), Expect = 2e-05
 Identities = 11/33 (33%), Positives = 16/33 (48%)

Query: 42 WHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDY 74
          WH +CFVC+ C + L    +       YCL  +
Sbjct: 27 WHKECFVCTACRKQLSGQRFTARDDFAYCLNCF 59

>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 72

 Score = 45.1 bits (107), Expect = 1e-07
 Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 2/46 (4%)

Query: 41 LWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHAC 86
          ++H  CFVCSTC   L    ++  +   YC   Y   L+     + 
Sbjct: 28 VFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLE--SGPSS 71

>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 72

 Score = 40.1 bits (94), Expect = 1e-05
 Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 81  PRCHACDELIFVNEYTL-AENKTFHVKHFCCYECDKELCNQSYIPV 125
             C  C E +  +   + A ++ FHV  F C  C  +L  Q +  V
Sbjct: 6   SGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFYAV 51

>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 69

 Score = 45.1 bits (107), Expect = 1e-07
 Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 81  PRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYI 123
             C  C++ I     T  +++ +H   F C  C K+L  Q + 
Sbjct: 6   SGCVKCNKAITSGGIT-YQDQPWHADCFVCVTCSKKLAGQRFT 47

>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 69

 Score = 40.4 bits (95), Expect = 6e-06
 Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 42 WHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCH 84
          WH  CFVC TC + L    +   +   YC+  Y   +      
Sbjct: 27 WHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVS-GPSS 68

>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens} Length = 77

 Score = 45.2 bits (107), Expect = 1e-07
 Identities = 11/63 (17%), Positives = 22/63 (34%), Gaps = 5/63 (7%)

Query: 66  GNVYCLRDYATMLDIPRCHACDELI----FVNEYTLAENKTFHVKHFCCYECDKELCNQS 121
            +      Y   +   +C  C   I      +     E +++H   F C +C   L N+ 
Sbjct: 2   SSGSSGDCYKNFV-AKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKR 60

Query: 122 YIP 124
           ++ 
Sbjct: 61  FVF 63

>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens} Length = 77

 Score = 36.3 bits (84), Expect = 3e-04
 Identities = 12/60 (20%), Positives = 19/60 (31%), Gaps = 2/60 (3%)

Query: 15 CCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDY 74
           C  C   +        +   +     WH  CF C  C   L +  +  ++  VYC    
Sbjct: 17 KCAGCKNPITGFGKGSSVVAYEGQS--WHDYCFHCKKCSVNLANKRFVFHQEQVYCPDCA 74

>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 70

 Score = 42.4 bits (100), Expect = 1e-06
 Identities = 12/36 (33%), Positives = 17/36 (47%)

Query: 42 WHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATM 77
          WHP+CF C  C E+L D+ +    G   C   +   
Sbjct: 27 WHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNRE 62

>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 70

 Score = 39.7 bits (93), Expect = 1e-05
 Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 80  IPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYIP 124
              CH C E I +     A N ++H + F C  C + L +  ++ 
Sbjct: 5   SSGCHQCGEFI-IGRVIKAMNNSWHPECFRCDLCQEVLADIGFVK 48

>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 77

 Score = 42.0 bits (99), Expect = 2e-06
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 5/63 (7%)

Query: 16 CYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYA 75
          C  C           KI  S     L+H QCFVC+ C +   + +++ ++G  YC  D+ 
Sbjct: 14 CERCKGGFAP---AEKIVNSNGE--LYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQ 68

Query: 76 TML 78
           + 
Sbjct: 69 MLF 71

>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 77

 Score = 39.3 bits (92), Expect = 2e-05
 Identities = 7/44 (15%), Positives = 15/44 (34%), Gaps = 1/44 (2%)

Query: 81  PRCHACDELIFVNE-YTLAENKTFHVKHFCCYECDKELCNQSYI 123
             C  C       E    +  + +H + F C +C ++     + 
Sbjct: 12  ATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFY 55

>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B Length = 72

 Score = 40.8 bits (96), Expect = 5e-06
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 5/62 (8%)

Query: 16 CYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYA 75
          C  C           KI  S     L+H QCFVC+ C +   + +++ ++G  YC  D+ 
Sbjct: 14 CERCKGGFAPA---EKIVNSNGE--LYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQ 68

Query: 76 TM 77
           +
Sbjct: 69 ML 70

>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B Length = 72

 Score = 38.9 bits (91), Expect = 3e-05
 Identities = 7/44 (15%), Positives = 15/44 (34%), Gaps = 1/44 (2%)

Query: 81  PRCHACDELIFVNE-YTLAENKTFHVKHFCCYECDKELCNQSYI 123
             C  C       E    +  + +H + F C +C ++     + 
Sbjct: 12  ATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFY 55

>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 81

 Score = 41.3 bits (97), Expect = 5e-06
 Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 2/53 (3%)

Query: 66  GNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELC 118
            +    +DY        CH C  L+    + +A    +H + F C  C   + 
Sbjct: 2   SSGSSGKDYWGKFG-EFCHGCSLLM-TGPFMVAGEFKYHPECFACMSCKVIIE 52

>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 82

 Score = 40.9 bits (96), Expect = 6e-06
 Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 2/60 (3%)

Query: 66  GNVYCLRDYATMLDIPRCHACDELIFVNEYTL-AENKTFHVKHFCCYECDKELCNQSYIP 124
            +      Y        C  C +LI  +   L  E++ FH   F C  C + L ++ +  
Sbjct: 2   SSGSSGPCYDNTF-ANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTC 60

>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 82

 Score = 37.9 bits (88), Expect = 8e-05
 Identities = 9/44 (20%), Positives = 14/44 (31%), Gaps = 1/44 (2%)

Query: 42 WHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHA 85
          +H  CF C  C   L D  +      + C   Y +        +
Sbjct: 39 FHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFS-SGPSS 81

>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 82

 Score = 40.7 bits (95), Expect = 8e-06
 Identities = 12/42 (28%), Positives = 16/42 (38%)

Query: 81  PRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSY 122
             C  C E ++V E        FH   F C+ C+  L    Y
Sbjct: 16  DLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGY 57

>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A Length = 81

 Score = 40.1 bits (94), Expect = 1e-05
 Identities = 16/73 (21%), Positives = 25/73 (34%), Gaps = 7/73 (9%)

Query: 16 CYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYA 75
          C  C + V    Y  +  Q       +H  CF+C  C + L       +   VYC   Y 
Sbjct: 10 CGACGRTV----YHAEEVQCDGRS--FHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYG 63

Query: 76 TMLDIPRCHACDE 88
               P+ +   +
Sbjct: 64 KKYG-PKGYGYGQ 75

>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A Length = 81

 Score = 38.2 bits (89), Expect = 7e-05
 Identities = 11/42 (26%), Positives = 19/42 (45%)

Query: 81  PRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSY 122
            +C AC   ++  E    + ++FH   F C  C K L + + 
Sbjct: 8   NKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTV 49

>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 81

 Score = 39.7 bits (93), Expect = 2e-05
 Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 1/51 (1%)

Query: 80  IPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYIPVTESRP 130
           + +C  C + I ++    A  K +H   F C  C + L    +     S+ 
Sbjct: 15  LEKCATCSQPI-LDRILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQI 64

>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 81

 Score = 37.3 bits (87), Expect = 1e-04
 Identities = 9/45 (20%), Positives = 17/45 (37%), Gaps = 2/45 (4%)

Query: 42 WHPQCFVCSTCDELLVDLMYFHYK-GNVYCLRDYATMLDIPRCHA 85
          +HP CF C  C   L  + +       ++C+ D+          +
Sbjct: 37 YHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRKFA-SGPSS 80

>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 81

 Score = 39.4 bits (92), Expect = 2e-05
 Identities = 15/58 (25%), Positives = 20/58 (34%), Gaps = 2/58 (3%)

Query: 73  DYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYIPVTESRP 130
           DY  +    RC +CD+ I   E   A  KT+H   F C  C         +       
Sbjct: 9   DYQRLYG-TRCFSCDQFI-EGEVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKEC 64

>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3 Length = 122

 Score = 40.0 bits (93), Expect = 3e-05
 Identities = 14/94 (14%), Positives = 28/94 (29%), Gaps = 2/94 (2%)

Query: 42  WHPQCFVCSTCDELLVDLM--YFHYKGNVYCLRDYATMLDIPRCHACDELIFVNEYTLAE 99
           WH +C  CS+C   L D+    +   G + C  DY  +            +      +  
Sbjct: 28  WHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGGDVMVV 87

Query: 100 NKTFHVKHFCCYECDKELCNQSYIPVTESRPGQD 133
            +   +      E ++ +          +    D
Sbjct: 88  GEPTLMGGEFGDEDERLITRLENTQFDAANGIDD 121

>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 91

 Score = 39.4 bits (92), Expect = 3e-05
 Identities = 12/42 (28%), Positives = 20/42 (47%)

Query: 81  PRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSY 122
             C  C + ++  E  LA  + FH+  F C  C+ +L   +Y
Sbjct: 16  ETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTY 57

>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 91

 Score = 36.0 bits (83), Expect = 5e-04
 Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 8/63 (12%)

Query: 16 CYECDKKVQF-ENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDY 74
          C EC K V   E            + ++H  CF CS C+  L    Y    G +YC   +
Sbjct: 18 CVECQKTVYPMERLLAN-------QQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHF 70

Query: 75 ATM 77
            +
Sbjct: 71 NQL 73

>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 72

 Score = 38.6 bits (90), Expect = 4e-05
 Identities = 9/33 (27%), Positives = 13/33 (39%)

Query: 42 WHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDY 74
          WH  CF C  C   LV   +   + ++ C    
Sbjct: 31 WHNDCFNCKKCSLSLVGRGFLTERDDILCPDCG 63

>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 72

 Score = 36.0 bits (83), Expect = 4e-04
 Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 3/47 (6%)

Query: 81  PRCHACDELI---FVNEYTLAENKTFHVKHFCCYECDKELCNQSYIP 124
             C  C   I      +Y   E + +H   F C +C   L  + ++ 
Sbjct: 6   SGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLT 52

>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 76

 Score = 37.9 bits (88), Expect = 7e-05
 Identities = 13/56 (23%), Positives = 18/56 (32%), Gaps = 3/56 (5%)

Query: 15 CCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYC 70
           C  C K +        I         WH +CF C  C   LV   +      ++C
Sbjct: 7  GCVACSKPISGLTGAKFICFQDSQ---WHSECFNCGKCSVSLVGKGFLTQNKEIFC 59

>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 76

 Score = 37.5 bits (87), Expect = 1e-04
 Identities = 9/47 (19%), Positives = 20/47 (42%), Gaps = 3/47 (6%)

Query: 81  PRCHACDELI---FVNEYTLAENKTFHVKHFCCYECDKELCNQSYIP 124
             C AC + I      ++   ++  +H + F C +C   L  + ++ 
Sbjct: 6   SGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLT 52

>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens} Length = 123

 Score = 38.6 bits (89), Expect = 9e-05
 Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 2/38 (5%)

Query: 42  WHPQCFVCSTCDELLVDLM--YFHYKGNVYCLRDYATM 77
           WH +C  CS+C   L D+    +   G + C  DY  +
Sbjct: 84  WHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRL 121

>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens} Length = 123

 Score = 37.0 bits (85), Expect = 4e-04
 Identities = 10/40 (25%), Positives = 14/40 (35%)

Query: 78  LDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKEL 117
           L   RC  C   I       A +  +H +   C  C  +L
Sbjct: 59  LSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQL 98

>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 80

 Score = 37.8 bits (88), Expect = 1e-04
 Identities = 14/33 (42%), Positives = 15/33 (45%), Gaps = 1/33 (3%)

Query: 42 WHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDY 74
          WH  CF C TC  +L    Y    G  YC  DY
Sbjct: 38 WHVSCFKCQTCSVILTG-EYISKDGVPYCESDY 69

>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 80

 Score = 35.5 bits (82), Expect = 6e-04
 Identities = 13/43 (30%), Positives = 17/43 (39%)

Query: 80  IPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSY 122
              C  C E I   +  LA +K +HV  F C  C   L  +  
Sbjct: 15  PSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTGEYI 57

>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 79

 Score = 36.3 bits (84), Expect = 3e-04
 Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 42 WHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATM 77
          +HP  F C+ C + L        KG +YCL  +  M
Sbjct: 37 YHPDHFNCANCGKEL-TADARELKGELYCLPCHDKM 71

>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 79

 Score = 35.5 bits (82), Expect = 7e-04
 Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 72  RDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKEL 117
            + A  L    C  C  +I   +  + +N  +H  HF C  C KEL
Sbjct: 7   GEKARGLGKYICQKCHAII-DEQPLIFKNDPYHPDHFNCANCGKEL 51

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	138
2xqn_T	126	Testin, TESS; metal-binding protein, cytoskeleton,	99.97
2xjy_A	131	Rhombotin-2; oncoprotein, T-cell leukemia, proto-o	99.96
2rgt_A	169	Fusion of LIM/homeobox protein LHX3, linker, INSU	99.96
2jtn_A	182	LIM domain-binding protein 1, LIM/homeobox protein	99.95
1b8t_A	192	Protein (CRP1); LIM domain, muscle differentiation	99.95
1rut_X	188	Flinc4, fusion protein of LMO4 protein and LIM dom	99.95
2cup_A	101	Skeletal muscle LIM-protein 1; four and half LIM d	99.94
1m3v_A	122	FLIN4, fusion of the LIM interacting domain of LDB	99.87
2egq_A	77	FHL1 protein; LIM domain, four and A half LIM doma	99.78
1j2o_A	114	FLIN2, fusion of rhombotin-2 and LIM domain-bindin	99.78
2ehe_A	82	Four and A half LIM domains 3; FHL-3, skeletal mus	99.77
1b8t_A	192	Protein (CRP1); LIM domain, muscle differentiation	99.76
2cuq_A	80	Four and A half LIM domains 3; structural genomics	99.76
1x3h_A	80	Leupaxin; paxillin family, protein-protein interac	99.75
2dlo_A	81	Thyroid receptor-interacting protein 6; LIM domain	99.74
1x63_A	82	Skeletal muscle LIM-protein 1; LIM domain, four an	99.73
1x6a_A	81	LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc fi	99.72
1iml_A	76	CRIP, cysteine rich intestinal protein; metal-bind	99.71
1a7i_A	81	QCRP2 (LIM1); LIM domain containing proteins, meta	99.68
1v6g_A	81	Actin binding LIM protein 2; LIM domain, zinc bind	99.66
1rut_X	188	Flinc4, fusion protein of LMO4 protein and LIM dom	99.65
2xqn_T	126	Testin, TESS; metal-binding protein, cytoskeleton,	99.65
1x4k_A	72	Skeletal muscle LIM-protein 3; LIM domain, structu	99.65
1wyh_A	72	SLIM 2, skeletal muscle LIM-protein 2; structural	99.65
1x68_A	76	FHL5 protein; four-and-A-half LIM protein 5, zinc	99.63
2cu8_A	76	Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein	99.63
2xjy_A	131	Rhombotin-2; oncoprotein, T-cell leukemia, proto-o	99.63
1g47_A	77	Pinch protein; LIM domain, Zn finger, cell adhesio	99.62
2dj7_A	80	Actin-binding LIM protein 3; LIM domain, Zn bindin	99.62
2cur_A	69	Skeletal muscle LIM-protein 1; four and A half LIM	99.62
2d8z_A	70	Four and A half LIM domains 2; skeletal muscle LIM	99.6
1x61_A	72	Thyroid receptor interacting protein 6; LIM domain	99.6
2dar_A	90	PDZ and LIM domain protein 5; enigma homolog prote	99.6
1x4l_A	72	Skeletal muscle LIM-protein 3; LIM domain, structu	99.59
1x68_A	76	FHL5 protein; four-and-A-half LIM protein 5, zinc	99.59
2rgt_A	169	Fusion of LIM/homeobox protein LHX3, linker, INSU	99.59
1nyp_A	66	Pinch protein; LIM domain, protein recognition, ce	99.58
1wig_A	73	KIAA1808 protein; LIM domain, zinc finger, metal-b	99.58
2cu8_A	76	Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein	99.58
2ehe_A	82	Four and A half LIM domains 3; FHL-3, skeletal mus	99.58
1x4l_A	72	Skeletal muscle LIM-protein 3; LIM domain, structu	99.58
1x63_A	82	Skeletal muscle LIM-protein 1; LIM domain, four an	99.58
2iyb_E	65	Testin, TESS, TES; LIM domain, SH3-binding, tumour	99.58
1x3h_A	80	Leupaxin; paxillin family, protein-protein interac	99.57
1nyp_A	66	Pinch protein; LIM domain, protein recognition, ce	99.57
1iml_A	76	CRIP, cysteine rich intestinal protein; metal-bind	99.56
2dj7_A	80	Actin-binding LIM protein 3; LIM domain, Zn bindin	99.56
2dlo_A	81	Thyroid receptor-interacting protein 6; LIM domain	99.56
1x61_A	72	Thyroid receptor interacting protein 6; LIM domain	99.56
2d8y_A	91	Eplin protein; LIM domain, epithelial protein LOST	99.55
3f6q_B	72	LIM and senescent cell antigen-like-containing dom	99.55
2cuq_A	80	Four and A half LIM domains 3; structural genomics	99.55
1x4k_A	72	Skeletal muscle LIM-protein 3; LIM domain, structu	99.55
2cur_A	69	Skeletal muscle LIM-protein 1; four and A half LIM	99.54
1wyh_A	72	SLIM 2, skeletal muscle LIM-protein 2; structural	99.54
1a7i_A	81	QCRP2 (LIM1); LIM domain containing proteins, meta	99.54
2d8x_A	70	Protein pinch; LIM domain, pinch protein, structur	99.54
1x64_A	89	Alpha-actinin-2 associated LIM protein; LIM domain	99.54
2d8z_A	70	Four and A half LIM domains 2; skeletal muscle LIM	99.54
2co8_A	82	NEDD9 interacting protein with calponin homology a	99.54
2d8x_A	70	Protein pinch; LIM domain, pinch protein, structur	99.53
1x62_A	79	C-terminal LIM domain protein 1; PDZ and LIM domai	99.53
2jtn_A	182	LIM domain-binding protein 1, LIM/homeobox protein	99.53
2d8y_A	91	Eplin protein; LIM domain, epithelial protein LOST	99.51
2dar_A	90	PDZ and LIM domain protein 5; enigma homolog prote	99.51
2cor_A	79	Pinch protein; LIM domain, particularly interestin	99.51
2l4z_A	123	DNA endonuclease RBBP8, LIM domain transcription L	99.5
2l3k_A	123	Rhombotin-2, linker, LIM domain-binding protein 1;	99.5
1j2o_A	114	FLIN2, fusion of rhombotin-2 and LIM domain-bindin	99.5
1x62_A	79	C-terminal LIM domain protein 1; PDZ and LIM domai	99.5
3f6q_B	72	LIM and senescent cell antigen-like-containing dom	99.49
1g47_A	77	Pinch protein; LIM domain, Zn finger, cell adhesio	99.48
2egq_A	77	FHL1 protein; LIM domain, four and A half LIM doma	99.48
2cor_A	79	Pinch protein; LIM domain, particularly interestin	99.47
1x64_A	89	Alpha-actinin-2 associated LIM protein; LIM domain	99.46
1wig_A	73	KIAA1808 protein; LIM domain, zinc finger, metal-b	99.46
2l4z_A	123	DNA endonuclease RBBP8, LIM domain transcription L	99.46
2iyb_E	65	Testin, TESS, TES; LIM domain, SH3-binding, tumour	99.46
2cup_A	101	Skeletal muscle LIM-protein 1; four and half LIM d	99.45
2co8_A	82	NEDD9 interacting protein with calponin homology a	99.44
2l3k_A	123	Rhombotin-2, linker, LIM domain-binding protein 1;	99.44
1m3v_A	122	FLIN4, fusion of the LIM interacting domain of LDB	99.42
1x6a_A	81	LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc fi	99.41
1v6g_A	81	Actin binding LIM protein 2; LIM domain, zinc bind	99.23
1zfo_A	31	LAsp-1; LIM domain, zinc-finger, metal-binding pro	98.2
1zfo_A	31	LAsp-1; LIM domain, zinc-finger, metal-binding pro	97.02
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	88.62
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	88.18
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	87.78
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	87.16
2ysm_A	111	Myeloid/lymphoid or mixed-lineage leukemia protein	85.76
1weo_A	93	Cellulose synthase, catalytic subunit (IRX3); stru	82.94
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	82.8
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	82.11
1jjd_A	55	Metallothionein, SMTA; zinc finger, zinc cluster,	81.53
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	80.29

>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}

Probab=99.97  E-value=3.6e-31  Score=172.26  Aligned_cols=113  Identities=25%  Similarity=0.475  Sum_probs=101.8

Q ss_pred             CcccccccccccCCCeEEEeccccCCCCCCcccCcccccCCccccCCceeeeCCeeecHHHHHhhcCCCcccccCccccc
Q psy10674         13 HFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELIFV   92 (138)
Q Consensus        13 ~~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~~C~~C~~~I~~   92 (138)
                      ..+|..|+++|.+++.+..      +++.||++||+|..|+++|.+..|+.++|++||+.||.++++ ++|++|+++|.+
T Consensus         3 ~~~C~~C~~~I~~~~~~~a------~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~-~~C~~C~~~I~~   75 (126)
T 2xqn_T            3 KPRCAGCDELIFSNEYTQA------ENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHA-VVCQGCHNAIDP   75 (126)
T ss_dssp             CCBBTTTSSBCCSSCEEEE------TTEEECGGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSC-CBCTTTCSBCCT
T ss_pred             CCCCccCCCEeCCceEEee------CCCCccCCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcC-ccCcccCCcCCc
Confidence            3689999999997666544      466999999999999999988889999999999999999995 899999999986


Q ss_pred             C-cEEEeCCCccc--cCCccccccccccCCCCeeecCCCCCccC
Q psy10674         93 N-EYTLAENKTFH--VKHFCCYECDKELCNQSYIPVTESRPGQD  133 (138)
Q Consensus        93 ~-~~~~~~~~~~H--~~CF~C~~C~~~l~~~~f~~~~~~~~y~~  133 (138)
                      + .++.++++.||  ++||+|..|+++|.++.|++.+ |+|||.
T Consensus        76 ~~~~~~a~~~~~H~~~~CF~C~~C~~~l~~~~f~~~~-~~~yC~  118 (126)
T 2xqn_T           76 EVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVE-GMVFCS  118 (126)
T ss_dssp             TSCEEEETTEEEESSTTTSBCTTTCCBCTTSEEEEET-TEEESS
T ss_pred             CceEEECCCCEeeCCCCCcCcCCCCCccCCCeeEeEC-CEEcch
Confidence            4 46779999999  9999999999999999999988 999996

>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A

Probab=99.96  E-value=4e-30  Score=168.32  Aligned_cols=113  Identities=24%  Similarity=0.582  Sum_probs=98.6

Q ss_pred             cccccccccccCCCeEEEeccccCCCCCCcccCcccccCCcccc--CCceeeeCCeeecHHHHHhhcCCC--cccccCcc
Q psy10674         14 FCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLV--DLMYFHYKGNVYCLRDYATMLDIP--RCHACDEL   89 (138)
Q Consensus        14 ~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~--~~~~~~~~~~~yC~~c~~~~~~~~--~C~~C~~~   89 (138)
                      .+|..|+++|.+...+..      +++.||++||+|..|+++|.  +..|+.++|++||+.||.++++ +  +|.+|+++
T Consensus         3 ~~C~~C~~~I~~~~~~~a------~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~-~~~~C~~C~~~   75 (131)
T 2xjy_A            3 LTCGGCQQNIGDRYFLKA------IDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFG-QDGLCASCDKR   75 (131)
T ss_dssp             CBBTTTCCBCCSSEEEEE------TTEEEETTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHC-CCEECTTTCCE
T ss_pred             ccCcCCCCEeCCcEEEEE------CCCcccHHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCC-CccChhhcCCc
Confidence            579999999995434433      46699999999999999995  4679999999999999999995 7  99999999


Q ss_pred             cccCc-EEEeCCCccccCCccccccccccC-CCCeeecCCCCCccCC
Q psy10674         90 IFVNE-YTLAENKTFHVKHFCCYECDKELC-NQSYIPVTESRPGQDS  134 (138)
Q Consensus        90 I~~~~-~~~~~~~~~H~~CF~C~~C~~~l~-~~~f~~~~~~~~y~~~  134 (138)
                      |.+.+ ++.+.++.||++||+|..|+++|. +++|++.+ |+|||..
T Consensus        76 I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~-~~~~C~~  121 (131)
T 2xjy_A           76 IRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLIN-SDIVCEQ  121 (131)
T ss_dssp             ECTTSEEEEETTEEEEGGGCBCTTTCCBCCTTCEEEEET-TEEEEGG
T ss_pred             cCccceeEeeCCceECccCcccCCCCCCCCCCCEEEEEC-CEEEcHH
Confidence            98754 666999999999999999999995 78899998 9999964

>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A

Probab=99.96  E-value=5.9e-29  Score=169.26  Aligned_cols=115  Identities=23%  Similarity=0.510  Sum_probs=97.0

Q ss_pred             cCCcccccccccccCCCeEEEeccccCCCCCCcccCcccccCCccccCCceeeeCCeeecHHHHHhhcCCCcccccCccc
Q psy10674         11 VKHFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELI   90 (138)
Q Consensus        11 ~~~~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~~C~~C~~~I   90 (138)
                      +...+|..|+++|.+...+..      ++..||++||+|..|+++|.+.. +.++|++||+.||.++++ ++|.+|+++|
T Consensus         4 ~~~~~C~~C~~~I~~~~~~~a------~~~~wH~~CF~C~~C~~~L~~~~-f~~~g~~yC~~~y~~~f~-~~C~~C~~~I   75 (169)
T 2rgt_A            4 PEIPMCAGCDQHILDRFILKA------LDRHWHSKCLKCSDCHVPLAERC-FSRGESVYCKDDFFKRFG-TKCAACQLGI   75 (169)
T ss_dssp             ---CBBSSSSSBCCSSSCEEC------SSCEECTTTSBCTTTCCBCCSCC-EESSSCEECHHHHHHHHS-CBCTTTCCBC
T ss_pred             CCCCccccCCCccCCcEEEEE------CCcEEccccCccCCCCCcCCCCC-cccCCeeeeccccccccc-cccccccccc
Confidence            345789999999996544433      46699999999999999998765 589999999999999995 8999999999


Q ss_pred             ccCcE-EEeCCCccccCCccccccccccC-CCCeeecCCCCCccC
Q psy10674         91 FVNEY-TLAENKTFHVKHFCCYECDKELC-NQSYIPVTESRPGQD  133 (138)
Q Consensus        91 ~~~~~-~~~~~~~~H~~CF~C~~C~~~l~-~~~f~~~~~~~~y~~  133 (138)
                      .+.++ +.+.++.||++||+|..|+++|. ++.|+...+|+|||.
T Consensus        76 ~~~~~v~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~~C~  120 (169)
T 2rgt_A           76 PPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCK  120 (169)
T ss_dssp             CTTSEEEEETTEEEEGGGCBCTTTCCBCCTTCEEEECTTSCEEEH
T ss_pred             CCCcEEEEcCCceEeeCCCcCCCCCCCCCCCCceEEccCCeEECH
Confidence            87664 45999999999999999999998 677876655999984

>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}

Probab=99.95  E-value=9.2e-29  Score=170.14  Aligned_cols=116  Identities=23%  Similarity=0.504  Sum_probs=98.2

Q ss_pred             CcCCcccccccccccCCCeEEEeccccCCCCCCcccCcccccCCccccCCceeeeCCeeecHHHHHhhcCCCcccccCcc
Q psy10674         10 HVKHFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDEL   89 (138)
Q Consensus        10 h~~~~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~~C~~C~~~   89 (138)
                      .+...+|..|+++|.+...+..      +++.||++||+|..|+++|.+.. +.++|++||+.||.++++ ++|.+|+++
T Consensus        57 ~~~~~~C~~C~~~I~~~~~~~a------~~~~wH~~CF~C~~C~~~L~~~~-f~~~g~~yC~~~y~~~f~-~kC~~C~~~  128 (182)
T 2jtn_A           57 TPEIPMCAGCDQHILDRFILKA------LDRHWHSKCLKCSDCHVPLAERC-FSRGESVYCKDDFFKRFG-TKCAACQLG  128 (182)
T ss_dssp             CCSCCBCBTSSSBCCCSEEEEE------TTEEECSSTTSCTTTCCCCSSCC-EEETTEEECHHHHHHTTS-CCCTTTCCC
T ss_pred             CCCCCcCccCCCCccCceeEEe------cCCeEccccCccCCCCCccCCCc-eeECCEeeecCccccccc-cccccCCCc
Confidence            3445799999999995444433      46699999999999999998765 579999999999999995 899999999


Q ss_pred             cccCc-EEEeCCCccccCCccccccccccC-CCCeeecCCCCCccC
Q psy10674         90 IFVNE-YTLAENKTFHVKHFCCYECDKELC-NQSYIPVTESRPGQD  133 (138)
Q Consensus        90 I~~~~-~~~~~~~~~H~~CF~C~~C~~~l~-~~~f~~~~~~~~y~~  133 (138)
                      |.+.+ ++.+.++.||++||+|..|+++|. +..|+...+|+|||.
T Consensus       129 I~~~~~v~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~yC~  174 (182)
T 2jtn_A          129 IPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCK  174 (182)
T ss_dssp             CCSSCCCCEETTEECCTTTCCCTTTCCCCCTTCEEEECTTSCEECH
T ss_pred             cCCCceEEecCCCCEEeCCCcCCCCCCCCCCCCceEEccCCEEECH
Confidence            98765 445999999999999999999998 677876655999995

>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A

Probab=99.95  E-value=6.8e-29  Score=172.08  Aligned_cols=114  Identities=22%  Similarity=0.460  Sum_probs=101.6

Q ss_pred             CCcccccccccccCCCeEEEeccccCCCCCCcccCcccccCCccccCCceeeeCCeeecHHHHHhhcCCCc---------
Q psy10674         12 KHFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPR---------   82 (138)
Q Consensus        12 ~~~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~~---------   82 (138)
                      ...+|..|+++|.+++.+..      +++.||++||+|..|+++|.+..|+.+++++||+.||.++++ ++         
T Consensus         6 ~~~~C~~C~~~I~~~~~v~a------~g~~wH~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~-~~c~~c~~~~g   78 (192)
T 1b8t_A            6 GGKKCGVCQKAVYFAEEVQC------EGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYG-PKGKGKGMGAG   78 (192)
T ss_dssp             CCEECTTTCCEECSSCCEEE------TTEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHS-CCCCCCCCCCC
T ss_pred             CCCcCccCCCeecceeEEEe------CCceecCCCCcCcccCCcCCCCeeEecCCEeeChhhhHhhcC-ccccccccccc
Confidence            35789999999987776644      466999999999999999988889999999999999999884 44         


Q ss_pred             ---------------------------------------ccccCcccccCcEEEeCCCccccCCccccccccccCCCCee
Q psy10674         83 ---------------------------------------CHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYI  123 (138)
Q Consensus        83 ---------------------------------------C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~l~~~~f~  123 (138)
                                                             |++|+++|.+++++.++++.||++||+|..|+++|.+..|+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~  158 (192)
T 1b8t_A           79 TLSTDKGESLGIKYEEGQSHRPTNPNASRMAQKVGGSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLA  158 (192)
T ss_dssp             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECTTTSCEECSSSCEEETTEEECTTTCBCTTTCCBCCSSSEE
T ss_pred             cEecCCCcccccccccccccCCCCcCccccccccCCCCcCCCCCCEecCcEEEecCCCccchhcCCccccCCCCCCCccc
Confidence                                                   88999999877777899999999999999999999988899


Q ss_pred             ecCCCCCccC
Q psy10674        124 PVTESRPGQD  133 (138)
Q Consensus       124 ~~~~~~~y~~  133 (138)
                      ..+ |+|||.
T Consensus       159 ~~~-g~~yC~  167 (192)
T 1b8t_A          159 DKD-GEIYCK  167 (192)
T ss_dssp             EET-TEEEEH
T ss_pred             ccC-CEEeCH
Confidence            888 999995

>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B

Probab=99.95  E-value=1.3e-28  Score=170.17  Aligned_cols=115  Identities=23%  Similarity=0.515  Sum_probs=99.4

Q ss_pred             CCcccccccccccCCCeEEEeccccCCCCCCcccCcccccCCccccC--CceeeeCCeeecHHHHHhhcCCC--cccccC
Q psy10674         12 KHFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVD--LMYFHYKGNVYCLRDYATMLDIP--RCHACD   87 (138)
Q Consensus        12 ~~~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~--~~~~~~~~~~yC~~c~~~~~~~~--~C~~C~   87 (138)
                      ...+|..|+++|.+...+..      +++.||++||+|..|+++|..  ..|+.+++++||+.||.++++ +  +|.+|+
T Consensus         4 ~~~~C~~C~~~I~~~~~~~a------~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~-~~~~C~~C~   76 (188)
T 1rut_X            4 SWKRCAGCGGKIADRFLLYA------MDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG-NSGACSACG   76 (188)
T ss_dssp             CCCBBTTTCCBCCCSEEEEE------TTEEECGGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHS-CCEECTTTC
T ss_pred             CCCcCccCCCEeCCceeEEe------cCcEecccCcccCCCCcccccCCceEEEeCCccccccccccccc-cCCccccCC
Confidence            34689999999995433433      466999999999999999964  689999999999999999995 6  799999


Q ss_pred             cccccCc-EEEeCCCccccCCccccccccccC-CCCeeecCCCCCccCC
Q psy10674         88 ELIFVNE-YTLAENKTFHVKHFCCYECDKELC-NQSYIPVTESRPGQDS  134 (138)
Q Consensus        88 ~~I~~~~-~~~~~~~~~H~~CF~C~~C~~~l~-~~~f~~~~~~~~y~~~  134 (138)
                      ++|.+.+ ++.+.++.||++||+|..|+++|. +..|++.+ |+|||..
T Consensus        77 ~~I~~~e~~i~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~-g~~yC~~  124 (188)
T 1rut_X           77 QSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYIN-GSLFCEH  124 (188)
T ss_dssp             CEECTTSEEEEETTEEECGGGCBCTTTCCBCCTTCEEEEET-TEEEEGG
T ss_pred             CccccCcEEEEcCCCEEeCCCCeECCCCCCCCCCCeEEEEC-CeEECHH
Confidence            9998755 566999999999999999999996 77899988 9999964

>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3

Probab=99.94  E-value=6.1e-27  Score=146.74  Aligned_cols=95  Identities=19%  Similarity=0.439  Sum_probs=83.3

Q ss_pred             CcccccccccccC-CCeEEEeccccCCCCCCcccCcccccCCccccCCceeeeCCeeecHHHHHhhcCCCcccccCcccc
Q psy10674         13 HFCCYECDKKVQF-ENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELIF   91 (138)
Q Consensus        13 ~~~C~~C~~~i~~-~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~~C~~C~~~I~   91 (138)
                      ..+|..|+++|.. ++.+..      ++..||++||+|..|+++|.+..|+.+++++||+.||.++++ ++|.+|+++|.
T Consensus         5 ~~~C~~C~~~I~~~~~~~~a------~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~-~~C~~C~~~I~   77 (101)
T 2cup_A            5 SSGCVECRKPIGADSKEVHY------KNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDS-PKCKGCFKAIV   77 (101)
T ss_dssp             CCBCSSSCCBCCSSSCEEEE------TTEEEETTTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCC-CBCSSSCCBCC
T ss_pred             CCcCcccCCcccCCceEEEE------CccChhhcCCcccccCCCCCcCeeECcCCEEEChhHhhhhcC-CccccCCCccc
Confidence            4689999999975 444443      466999999999999999988889999999999999999995 89999999998


Q ss_pred             cC-cEEEeCCCccccCCccccccc
Q psy10674         92 VN-EYTLAENKTFHVKHFCCYECD  114 (138)
Q Consensus        92 ~~-~~~~~~~~~~H~~CF~C~~C~  114 (138)
                      ++ .++.++++.||++||+|..|+
T Consensus        78 ~~~~~~~a~~~~~H~~CF~C~~C~  101 (101)
T 2cup_A           78 AGDQNVEYKGTVWHKDCFSGPSSG  101 (101)
T ss_dssp             SSSCEEESSSCEEETTTCCCTTCC
T ss_pred             cCCeEEEeCCcchHHhCCCCCCCC
Confidence            54 467799999999999999985

>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3

Probab=99.87  E-value=4.8e-23  Score=133.14  Aligned_cols=100  Identities=16%  Similarity=0.276  Sum_probs=84.2

Q ss_pred             CcccccccccccCCCeEEEeccccCCCCCCcccCcccccCCcccc--CCceeeeCCeeecHHHHHhhcCCC--cccccCc
Q psy10674         13 HFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLV--DLMYFHYKGNVYCLRDYATMLDIP--RCHACDE   88 (138)
Q Consensus        13 ~~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~--~~~~~~~~~~~yC~~c~~~~~~~~--~C~~C~~   88 (138)
                      ..+|..|+++|.+...+..      ++..||++||+|..|+++|.  +..|+.+++++||+.||.++++ +  +|++|++
T Consensus         5 ~~~C~~C~~~I~~~~~~~a------~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~-~~~~C~~C~~   77 (122)
T 1m3v_A            5 WKRCAGCGGKIADRFLLYA------MDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG-NSGAGGSGGH   77 (122)
T ss_dssp             CCCBSSSSSCCCSSCCEEE------TTEEECHHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHC-CCCSSSCSSC
T ss_pred             CCCCcccCCEeCCcEEEEE------CCceeHhhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcC-CCCccccCCC
Confidence            4689999999996654544      46699999999999999996  3579999999999999999995 7  9999999


Q ss_pred             ccccCcEEEeCCCccccCCccccccccccCCCCeeecCCCCCccCC
Q psy10674         89 LIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYIPVTESRPGQDS  134 (138)
Q Consensus        89 ~I~~~~~~~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~~~~~y~~~  134 (138)
                      +|.++.++ +.|+             .+|.+++|++.+ |+|||..
T Consensus        78 ~I~~~~~~-~~g~-------------~~l~g~~f~~~~-~~~yC~~  108 (122)
T 1m3v_A           78 MGSGGDVM-VVGE-------------PTLMGGEFGDED-ERLITRL  108 (122)
T ss_dssp             CSCCEESS-SSSS-------------SSCCSCTTCCTT-CCCCEEC
T ss_pred             CcCchheE-EcCC-------------cCCCCCccEecC-CEeEccC
Confidence            99875544 6653             368899999999 9999975

>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}

Probab=99.78  E-value=3.3e-20  Score=110.52  Aligned_cols=67  Identities=16%  Similarity=0.299  Sum_probs=61.1

Q ss_pred             CCeeecHHHHHhhcCCCcccccCccccc----CcEEEeCCCccccCCccccccccccCCCCeeecCCCCCccC
Q psy10674         65 KGNVYCLRDYATMLDIPRCHACDELIFV----NEYTLAENKTFHVKHFCCYECDKELCNQSYIPVTESRPGQD  133 (138)
Q Consensus        65 ~~~~yC~~c~~~~~~~~~C~~C~~~I~~----~~~~~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~~~~~y~~  133 (138)
                      ++++||++||.++++ ++|++|+++|.+    ..++.++++.||++||+|..|+++|.+..|++.+ |+|||.
T Consensus         1 g~~~yC~~cy~~~~~-~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~-~~~yC~   71 (77)
T 2egq_A            1 GSSGSSGDCYKNFVA-KKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFVFHQ-EQVYCP   71 (77)
T ss_dssp             CCSSCCTTCCCSCCC-CCCSSSCCCCCCCSSCCCEEEETTEEEETTTCBCSSSCCBCTTSCCCEET-TEECCH
T ss_pred             CCCeEchhHhchhhC-ccCcccCCcccCCCCCceeEEECcceeCcccCEehhcCCCCCCCccEeEC-CEEECh
Confidence            468999999999994 899999999984    4677799999999999999999999999999999 999995

>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3

Probab=99.78  E-value=1.6e-19  Score=115.29  Aligned_cols=95  Identities=17%  Similarity=0.343  Sum_probs=75.7

Q ss_pred             CcccccccccccCCCeEEEeccccCCCCCCcccCcccccCCccccC--CceeeeCCeeecHHHHHhhcCCCcccccCccc
Q psy10674         13 HFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVD--LMYFHYKGNVYCLRDYATMLDIPRCHACDELI   90 (138)
Q Consensus        13 ~~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~--~~~~~~~~~~yC~~c~~~~~~~~~C~~C~~~I   90 (138)
                      ..+|..|+++|.+.+.+..      +++.||++||+|..|+++|..  ..|+.+++++||+.||.++++ ++|..|..  
T Consensus         3 ~~~C~~C~~~I~~~~~~~a------~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~-~~c~~c~~--   73 (114)
T 1j2o_A            3 LLTCGGCQQNIGDRYFLKA------IDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGG-SGGHMGSG--   73 (114)
T ss_dssp             CBCBSSSCSCBCSSEEEEC------SSSEECTTTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHT-SCCSSCBS--
T ss_pred             CCCCcCCCCeeCCcEEEEE------CchhHHHhcCcccccCCchhcCCCeeEEECCeeechHHHHHHhC-cccCcCCC--
Confidence            4689999999995434433      467999999999999999964  579999999999999999995 89998862  


Q ss_pred             ccCcEEEeCCCccccCCccccccccc-cCCCCeeecCCCCCccCC
Q psy10674         91 FVNEYTLAENKTFHVKHFCCYECDKE-LCNQSYIPVTESRPGQDS  134 (138)
Q Consensus        91 ~~~~~~~~~~~~~H~~CF~C~~C~~~-l~~~~f~~~~~~~~y~~~  134 (138)
                        +.++.               |.++ |.++.|++.+ ++|||..
T Consensus        74 --~~~~~---------------~~~~~~~g~~f~~~~-~~~~C~~  100 (114)
T 1j2o_A           74 --GDVMV---------------VGEPTLMGGEFGDED-ERLITRL  100 (114)
T ss_dssp             --CSCCC---------------SSCSSTTSSBCCCSS-SCCCEEE
T ss_pred             --CceeE---------------cCCccCCCCeeEEcC-CEeecch
Confidence              22221               3344 6688999999 9999964

>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.77  E-value=3.1e-20  Score=111.90  Aligned_cols=68  Identities=19%  Similarity=0.347  Sum_probs=61.7

Q ss_pred             CCeeecHHHHHhhcCCCcccccCccccc-CcEEEeCCCccccCCccccccccccCCCCeeecCCCCCccCC
Q psy10674         65 KGNVYCLRDYATMLDIPRCHACDELIFV-NEYTLAENKTFHVKHFCCYECDKELCNQSYIPVTESRPGQDS  134 (138)
Q Consensus        65 ~~~~yC~~c~~~~~~~~~C~~C~~~I~~-~~~~~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~~~~~y~~~  134 (138)
                      +|++||+.||.++++ ++|++|+++|.+ +.++.++++.||++||+|..|+++|.+..|+..+ |+|||..
T Consensus         1 ~g~~yC~~~y~~~~~-~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~-~~~~C~~   69 (82)
T 2ehe_A            1 GSSGSSGPCYDNTFA-NTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTCQD-SELLCND   69 (82)
T ss_dssp             CCCCCCCCCCCCCCS-CBCTTTCCBCCSSCCBCCCSSCCCBTTTSBCTTTCCBCSSCCEEEET-TEEEETT
T ss_pred             CCceechhHhCcccC-CcCccCCCccccCcEEEEeCCccccccCCeecCCCCccCCCccEeeC-CEEECHH
Confidence            578999999999995 899999999983 5566689999999999999999999999999998 9999965

>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A

Probab=99.76  E-value=1e-18  Score=120.87  Aligned_cols=89  Identities=22%  Similarity=0.468  Sum_probs=75.6

Q ss_pred             CeeecCCCcCcCCcccccccccccCCCeEEEe------------------------------------------------
Q psy10674          1 YTLAENKTFHVKHFCCYECDKKVQFENYTGKI------------------------------------------------   32 (138)
Q Consensus         1 ~~~a~g~~~h~~~~~C~~C~~~i~~~~~~~~~------------------------------------------------   32 (138)
                      +|.|+|+.||++||+|..|+++|....++...                                                
T Consensus        22 ~v~a~g~~wH~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~~c~~c~~~~g~~~~~~~~~~~~~~~~~~~~~p~  101 (192)
T 1b8t_A           22 EVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGKGKGMGAGTLSTDKGESLGIKYEEGQSHRPT  101 (192)
T ss_dssp             CEEETTEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHSCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_pred             EEEeCCceecCCCCcCcccCCcCCCCeeEecCCEeeChhhhHhhcCccccccccccccEecCCCcccccccccccccCCC
Confidence            36799999999999999999999866544321                                                


Q ss_pred             ---------------------------ccccCCCCCCcccCcccccCCccccCCceeeeCCeeecHHHHHhhcCCCcccc
Q psy10674         33 ---------------------------TQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHA   85 (138)
Q Consensus        33 ---------------------------~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~~C~~   85 (138)
                                                 +.+.+++..||++||+|..|+++|.+..|+.+++++||+.||.++++ ++|.+
T Consensus       102 ~~~~~~~~~~~~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~-~kc~~  180 (192)
T 1b8t_A          102 NPNASRMAQKVGGSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFG-PKGFG  180 (192)
T ss_dssp             CCCCCCCCCCCCCCEECTTTSCEECSSSCEEETTEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHTC-CCCCC
T ss_pred             CcCccccccccCCCCcCCCCCCEecCcEEEecCCCccchhcCCccccCCCCCCCcccccCCEEeCHHHHHHhcC-CcCCC
Confidence                                       11235677999999999999999987789999999999999999995 89999


Q ss_pred             cCccc
Q psy10674         86 CDELI   90 (138)
Q Consensus        86 C~~~I   90 (138)
                      |++++
T Consensus       181 C~~~~  185 (192)
T 1b8t_A          181 FGQGA  185 (192)
T ss_dssp             CCCCC
T ss_pred             CCCcc
Confidence            99987

>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.76  E-value=1.3e-19  Score=108.73  Aligned_cols=66  Identities=17%  Similarity=0.327  Sum_probs=60.4

Q ss_pred             CCeeecHHHHHhhcCCCcccccCcccccCcEEEeCCCccccCCccccccccccCCCCeeecCCCCCccC
Q psy10674         65 KGNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYIPVTESRPGQD  133 (138)
Q Consensus        65 ~~~~yC~~c~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~~~~~y~~  133 (138)
                      +|++||++||.+++ +++|++|+++|.++ ++.++++.||++||+|..|+++|.+..|++.+ |+|||.
T Consensus         1 gg~~yC~~cy~~~~-~~~C~~C~~~I~~~-~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~-~~~yC~   66 (80)
T 2cuq_A            1 GSSGSSGPCYENKF-APRCARCSKTLTQG-GVTYRDQPWHRECLVCTGCQTPLAGQQFTSRD-EDPYCV   66 (80)
T ss_dssp             CCCCSCCCCCCCCS-SCCCTTTCCCCCSC-CEESSSSEECTTTCBCSSSCCBCTTCCEEECS-SSEEEH
T ss_pred             CCcEEcHHHHcccc-CCcCCCCCCEecCc-EEEECCchhhhhhCCcccCCCcCCCCeeEeEC-CEEECH
Confidence            57899999999998 48999999999775 67799999999999999999999988999988 999994

>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.75  E-value=1.5e-19  Score=108.35  Aligned_cols=66  Identities=21%  Similarity=0.517  Sum_probs=60.2

Q ss_pred             CCeeecHHHHHhhcCCCcccccCcccccCcEEEeCCCccccCCccccccccccCCCCeeecCCCCCccC
Q psy10674         65 KGNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYIPVTESRPGQD  133 (138)
Q Consensus        65 ~~~~yC~~c~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~~~~~y~~  133 (138)
                      ++++||++||.+++ +++|++|+++|.+ +++.++++.||++||+|..|+++|.+..|+..+ |+|||.
T Consensus         1 gg~~yC~~~y~~~~-~~~C~~C~~~I~~-~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~-~~~yC~   66 (80)
T 1x3h_A            1 GSSGSSGKDFLAMF-SPKCGGCNRPVLE-NYLSAMDTVWHPECFVCGDCFTSFSTGSFFELD-GRPFCE   66 (80)
T ss_dssp             CCCCCCCCCCCCCC-SCBCTTTCCBCCS-SCEEETTEEECTTTCBCSSSCCBSCSSCCEESS-SCEECH
T ss_pred             CCCccchhHHhhhc-CCccccCCCeecc-eeEEECCCeEecCcCChhhCCCCCCCCcEEeEC-CEEECH
Confidence            47899999999999 4899999999987 566799999999999999999999988899988 999994

>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.74  E-value=4.5e-19  Score=106.56  Aligned_cols=66  Identities=18%  Similarity=0.283  Sum_probs=58.8

Q ss_pred             CCeeecHHHHHhhcCCCcccccCcccccCcEEEeCCCccccCCccccccccccCCCCeeecCCCCCccC
Q psy10674         65 KGNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYIPVTESRPGQD  133 (138)
Q Consensus        65 ~~~~yC~~c~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~~~~~y~~  133 (138)
                      ++++||++||. ++ +++|++|+++|.+ .++.|+++.||++||+|..|+++|.+..|+..++|+|||.
T Consensus         2 ~g~~yC~~~y~-~~-~~~C~~C~~~I~~-~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~g~~yC~   67 (81)
T 2dlo_A            2 SSGSSGEGCYV-AT-LEKCATCSQPILD-RILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCI   67 (81)
T ss_dssp             CCCCCCCCCCC-SS-CCBCTTTCCBCCS-CCEEETTEEECTTTCBCSSSCCBCTTSCEECCTTCCCEEH
T ss_pred             cCCEECHHHhh-cC-CCccccCCCeecc-eeEEECCccccHHhcCcccCCCccCCCeeEECCCCEEECH
Confidence            68999999998 55 5899999999985 4777999999999999999999999988988744999984

>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.73  E-value=5.6e-19  Score=106.33  Aligned_cols=67  Identities=15%  Similarity=0.258  Sum_probs=60.4

Q ss_pred             CCeeecHHHHHhhcCCCcccccCcccccCc-EEEeCCCccccCCccccccccccCCCCeeecCCCCCccC
Q psy10674         65 KGNVYCLRDYATMLDIPRCHACDELIFVNE-YTLAENKTFHVKHFCCYECDKELCNQSYIPVTESRPGQD  133 (138)
Q Consensus        65 ~~~~yC~~c~~~~~~~~~C~~C~~~I~~~~-~~~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~~~~~y~~  133 (138)
                      ++.+||++||.++++ ++|++|+++|.+++ ++.++++.||++||+|..|+++|.+..|++.+ |+|||.
T Consensus         1 ~~~~yC~~cy~~~~~-~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~-~~~yC~   68 (82)
T 1x63_A            1 GSSGSSGKCTTREDS-PKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPKG-EDFYCV   68 (82)
T ss_dssp             CCSCCCCCCCSCCCS-CBCSSSCCBCCSSSCEEECSSCEEETTTCCCSSSCCCCTTSCEEEET-TEEEEH
T ss_pred             CCCcCchhHHccccC-CcCccCCcccccCceEEEECccccccccCchhhCCCccCCCccEeeC-CEEECH
Confidence            468999999999984 89999999998643 57799999999999999999999988999988 999994

>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.72  E-value=9.6e-19  Score=105.09  Aligned_cols=66  Identities=18%  Similarity=0.347  Sum_probs=57.9

Q ss_pred             CCeeecHHHHHhhcCCCcccccCcccccCcEEEeCCCccccCCccccccccccC-CCCeee-cCCCCCccC
Q psy10674         65 KGNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELC-NQSYIP-VTESRPGQD  133 (138)
Q Consensus        65 ~~~~yC~~c~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~l~-~~~f~~-~~~~~~y~~  133 (138)
                      ++.+||+.||.++++ ++|++|+++|. +.++.|+++.||++||+|..|+++|. +..|++ .+ |+|||.
T Consensus         1 g~~~yC~~~y~~~~~-~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~-~~~~C~   68 (81)
T 1x6a_A            1 GSSGSSGKDYWGKFG-EFCHGCSLLMT-GPFMVAGEFKYHPECFACMSCKVIIEDGDAYALVQH-ATLYCG   68 (81)
T ss_dssp             CCCCCCCCCSSCCSS-CBCTTTCCBCC-SCCBCCTTCCBCTTSCBCTTTCCBCCTTSCEEECSS-SCEEEH
T ss_pred             CCCccchhHHhhhcC-CcCccCCCCcC-ceEEEECCceeccccCCccCCCCccCCCCcEEEeeC-CEEECH
Confidence            367899999999995 89999999998 45677999999999999999999997 677885 55 999994

>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3

Probab=99.71  E-value=8e-18  Score=99.89  Aligned_cols=71  Identities=25%  Similarity=0.472  Sum_probs=62.4

Q ss_pred             cccccccccccCCCeEEEeccccCCCCCCcccCcccccCCccccCCceeeeCCeeecH-HHHHhhcCCCcccccCcccc
Q psy10674         14 FCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCL-RDYATMLDIPRCHACDELIF   91 (138)
Q Consensus        14 ~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~-~c~~~~~~~~~C~~C~~~I~   91 (138)
                      ++|..|+++|.+++.+..      +++.||++||+|..|+++|.+..|+.+++++||+ .||.++++ ++|.+|++.+.
T Consensus         1 p~C~~C~~~I~~~~~v~a------~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~-~~C~~C~~~~~   72 (76)
T 1iml_A            1 PKCPKCDKEVYFAERVTS------LGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFG-PKGFGRGGAES   72 (76)
T ss_dssp             CBCTTTSSBCCGGGEEEE------TTEEEETTTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHSS-CCCSSCCCSSS
T ss_pred             CcCCCCCCEEECceEEEE------CCccccCCCCCccccCccCCCCceECcCCeEeeCHHHHHHHhC-ccCCCcCCcee
Confidence            479999999997777654      3559999999999999999888899999999999 69999995 89999997763

>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A

Probab=99.68  E-value=2.3e-17  Score=99.04  Aligned_cols=73  Identities=19%  Similarity=0.315  Sum_probs=53.7

Q ss_pred             cCCcccccccccccCCCeEEEeccccCCCCCCcccCcccccCCccccCCceeeeCCeeecHHHHHhhcCCCcccccCccc
Q psy10674         11 VKHFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELI   90 (138)
Q Consensus        11 ~~~~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~~C~~C~~~I   90 (138)
                      ....+|..|+++|.+++.+..      .++.||++||+|..|+++|.+..|+.+++++||+.||.++++ ++|.+|++..
T Consensus         5 ~~~~~C~~C~~~I~~~~~~~a------~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~-~~c~gcg~g~   77 (81)
T 1a7i_A            5 GGGNKCGACGRTVYHAEEVQC------DGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYG-PKGYGYGQGA   77 (81)
T ss_dssp             ---CBCSSSCCBCSSTTEEEE------TTEEEESSSEECSSSCCEECSSCCEEETTEEECSHHHHHHCC-----------
T ss_pred             CCCCcCcCcCccccCceeEEe------CCcccccccCccCCCCCCCCCCCeEeeCCEEECHHHHHHHhC-CcccccCCcc
Confidence            345789999999987776654      356999999999999999988889999999999999999995 8999999765

>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.66  E-value=1.4e-17  Score=100.02  Aligned_cols=66  Identities=23%  Similarity=0.341  Sum_probs=55.9

Q ss_pred             CeeecHHHHHhhcCCCcccccCcccccCcEEEeCCCccccCCccccccccccCCCCeeecCCCCCccC
Q psy10674         66 GNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYIPVTESRPGQD  133 (138)
Q Consensus        66 ~~~yC~~c~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~~~~~y~~  133 (138)
                      +.+||+.||.++++ ++|++|+++|.+ +++.|+++.||++||+|..|+++|....++..+++.+||.
T Consensus         2 ~~~yC~~dy~~~~~-~~C~~C~~~I~~-~~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~~~~C~   67 (81)
T 1v6g_A            2 SSGSSGLDYQRLYG-TRCFSCDQFIEG-EVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQ   67 (81)
T ss_dssp             CCCCCCSCGGGSCC-CBCTTTCCBCCS-CCEEETTEEECTTTSSCSSSCCCCCSSSCEEEETTEEEEH
T ss_pred             CCCcchHHHHhHhC-CcCccccCEecc-ceEEECCceeCccCCccccCCCCCCCCCEEEeCCCCEECh
Confidence            46899999999995 899999999985 5677999999999999999999998666666662446874

>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B

Probab=99.65  E-value=3.5e-17  Score=112.80  Aligned_cols=108  Identities=19%  Similarity=0.284  Sum_probs=74.8

Q ss_pred             eeecCCCcCcCCcccccccccccC--CCeEEEec-----------------------------c-ccCCCCCCcccCccc
Q psy10674          2 TLAENKTFHVKHFCCYECDKKVQF--ENYTGKIT-----------------------------Q-SQESEVLWHPQCFVC   49 (138)
Q Consensus         2 ~~a~g~~~h~~~~~C~~C~~~i~~--~~~~~~~~-----------------------------~-~~~~~~~~H~~Cf~C   49 (138)
                      |.|+|+.||++||+|..|+++|..  ..++...+                             + ..+.+..||++||+|
T Consensus        21 ~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~~~e~~i~a~~~~~H~~CF~C  100 (188)
T 1rut_X           21 LYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTC  100 (188)
T ss_dssp             EEETTEEECGGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEECTTSEEEEETTEEECGGGCBC
T ss_pred             EEecCcEecccCcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCccccCcEEEEcCCCEEeCCCCeE
Confidence            689999999999999999999874  23332211                             0 125678999999999


Q ss_pred             ccCCcccc-CCceeeeCCeeecHHHHHhhcCCCcccccCccc----ccCcEE-----EeCCCccccCCccc
Q psy10674         50 STCDELLV-DLMYFHYKGNVYCLRDYATMLDIPRCHACDELI----FVNEYT-----LAENKTFHVKHFCC  110 (138)
Q Consensus        50 ~~C~~~l~-~~~~~~~~~~~yC~~c~~~~~~~~~C~~C~~~I----~~~~~~-----~~~~~~~H~~CF~C  110 (138)
                      ..|+++|. +..|+..++++||..||.+++ .++|...+..-    ...+++     ..+|..+|++..+.
T Consensus       101 ~~C~~~L~~g~~f~~~~g~~yC~~c~~~~~-~~~~~~~g~~~~~~~~~~~v~vvgep~l~g~~~~~~~~r~  170 (188)
T 1rut_X          101 STCRNRLVPGDRFHYINGSLFCEHDRPTAL-INGHLNSGGSGGSGGSGGDVMVVGEPTLMGGEFGDEDERL  170 (188)
T ss_dssp             TTTCCBCCTTCEEEEETTEEEEGGGCCTTT-C----------------CCCEECCCCEETTCCCCCTTEEE
T ss_pred             CCCCCCCCCCCeEEEECCeEECHHHHHHHh-cccccccCCCCcccccCCcccccCCCcccCCCCCCCCCce
Confidence            99999995 567889999999999999988 47887776521    111111     25678888888776

>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}

Probab=99.65  E-value=6.1e-17  Score=104.79  Aligned_cols=77  Identities=32%  Similarity=0.780  Sum_probs=64.5

Q ss_pred             eeecCCCcCcCCcccccccccccCCCeEEEecc----------------------------ccCCCCCCc--ccCccccc
Q psy10674          2 TLAENKTFHVKHFCCYECDKKVQFENYTGKITQ----------------------------SQESEVLWH--PQCFVCST   51 (138)
Q Consensus         2 ~~a~g~~~h~~~~~C~~C~~~i~~~~~~~~~~~----------------------------~~~~~~~~H--~~Cf~C~~   51 (138)
                      +.|+|+.||++||+|..|+++|.+..++...++                            +.+++..||  ++||+|..
T Consensus        19 ~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~~~CF~C~~   98 (126)
T 2xqn_T           19 TQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSC   98 (126)
T ss_dssp             EEETTEEECGGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSCCBCTTTCSBCCTTSCEEEETTEEEESSTTTSBCTT
T ss_pred             EeeCCCCccCCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcCccCcccCCcCCcCceEEECCCCEeeCCCCCcCcCC
Confidence            689999999999999999999986555443221                            235678999  99999999


Q ss_pred             CCccccCCceeeeCCeeecHHHHHhhc
Q psy10674         52 CDELLVDLMYFHYKGNVYCLRDYATML   78 (138)
Q Consensus        52 C~~~l~~~~~~~~~~~~yC~~c~~~~~   78 (138)
                      |+++|.+..|+..++++||..++.+++
T Consensus        99 C~~~l~~~~f~~~~~~~yC~~~~~~~f  125 (126)
T 2xqn_T           99 CSKCLIGQKFMPVEGMVFCSVECKKRM  125 (126)
T ss_dssp             TCCBCTTSEEEEETTEEESSHHHHHSC
T ss_pred             CCCccCCCeeEeECCEEcchHHhhhhc
Confidence            999999888999999999998887765

>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.65  E-value=2.8e-16  Score=92.14  Aligned_cols=66  Identities=18%  Similarity=0.466  Sum_probs=56.6

Q ss_pred             cccccccccccCCCeEEEeccccCCCCCCcccCcccccCCccccCCceeeeCCeeecHHHHHhhcCCCcccc
Q psy10674         14 FCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHA   85 (138)
Q Consensus        14 ~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~~C~~   85 (138)
                      .+|..|+++|.+.+.++.+     ++..||++||+|..|+++|.+..|+.+++++||+.||.++++ ++|+.
T Consensus         6 ~~C~~C~~~I~~~~~~~~a-----~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~-~~C~~   71 (72)
T 1x4k_A            6 SGCQECKKTIMPGTRKMEY-----KGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHA-SGPSS   71 (72)
T ss_dssp             CCBSSSCCCCCSSSCEEEE-----TTEEEETTTTCCSSSCCCCCSSSEEEETTEEEEHHHHHHHTS-SCCCC
T ss_pred             CCCccCCCcccCCceEEEE-----CcCeecccCCcccccCCccCCCccCccCCeEECHHHHhHHhC-CCCCC
Confidence            5799999999976544443     466999999999999999988889999999999999999995 88863

>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.65  E-value=2.7e-16  Score=92.20  Aligned_cols=67  Identities=24%  Similarity=0.518  Sum_probs=57.0

Q ss_pred             CcccccccccccCCCeEEEeccccCCCCCCcccCcccccCCccccCCceeeeCCeeecHHHHHhhcCCCcccc
Q psy10674         13 HFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHA   85 (138)
Q Consensus        13 ~~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~~C~~   85 (138)
                      ..+|..|+++|.+++.++.+     ++..||++||+|..|+++|.+..|+.+++++||+.||.++++ ++|+.
T Consensus         5 ~~~C~~C~~~I~~~~~~~~a-----~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~-~~C~~   71 (72)
T 1wyh_A            5 SSGCSACGETVMPGSRKLEY-----GGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFA-SGPSS   71 (72)
T ss_dssp             CCBCSSSCCBCCSSSCEECS-----TTCCEETTTCBCTTTCCBTTTSCEEEETTEEEEHHHHHHHTS-CCCCC
T ss_pred             CCCCccCCCccccCccEEEE-----CccccCcccCeECCCCCcCCCCccCCcCCeEECHHHHHHHcc-CcCCC
Confidence            35799999999975444432     577999999999999999988889999999999999999995 78863

>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.63  E-value=1.3e-16  Score=94.58  Aligned_cols=67  Identities=19%  Similarity=0.474  Sum_probs=57.8

Q ss_pred             cccccccccccC---CCeEEEeccccCCCCCCcccCcccccCCccccCCceeeeCCeeecHHHHHhhcCCCcccccC
Q psy10674         14 FCCYECDKKVQF---ENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACD   87 (138)
Q Consensus        14 ~~C~~C~~~i~~---~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~~C~~C~   87 (138)
                      .+|..|+++|.+   .+++..      +++.||++||+|..|+++|.+..|+.+++++||+.||.++++ ++|+.++
T Consensus         6 ~~C~~C~~~I~~~g~~~~~~a------~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~-~~C~~~s   75 (76)
T 1x68_A            6 SGCVACSKPISGLTGAKFICF------QDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDT-DISGPSS   75 (76)
T ss_dssp             CCCTTTCCCCCTTTTCCEEEE------TTEEEEGGGCBCTTTCCBCSSSCEEEETTEEEETTTTCCCCC-CSSSSSC
T ss_pred             CCCccCCCcccCCCCceeEEE------CCcccCcccCChhhCCCcCCCCceEeECCEEECHHHhhhhhC-CcCCCCC
Confidence            578999999994   255444      466999999999999999988889999999999999999995 8998875

>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.63  E-value=3.9e-16  Score=92.51  Aligned_cols=69  Identities=25%  Similarity=0.436  Sum_probs=59.4

Q ss_pred             CcCCcccccccccccCCCeEEEeccccCCCCCCcccCcccccCCccccCCceeeeCCeeecH-HHHHhhcCCCcccc
Q psy10674         10 HVKHFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCL-RDYATMLDIPRCHA   85 (138)
Q Consensus        10 h~~~~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~-~c~~~~~~~~~C~~   85 (138)
                      .....+|..|+++|.+++.+..      +++.||++||+|..|+++|.+..|+.+++++||+ .||.++++ ++|.+
T Consensus         6 ~~~~~~C~~C~~~I~~~~~v~a------~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~-~kc~g   75 (76)
T 2cu8_A            6 SGMASKCPKCDKTVYFAEKVSS------LGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLFG-SGPSS   75 (76)
T ss_dssp             CCCCCBCTTTCCBCCTTTEEEE------TTEEEETTTCBCSSSCCBCCTTSCEEETTEEECTTTHHHHHSC-SSCSC
T ss_pred             CCCCCCCcCCCCEeECCeEEEE------CCeEeeCCCCCCCCCCCccCCCceEeECCEEecchHHHHHhcc-cccCC
Confidence            3445789999999997777654      3569999999999999999888899999999999 79999995 78863

>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A

Probab=99.63  E-value=1.9e-16  Score=103.11  Aligned_cols=77  Identities=18%  Similarity=0.421  Sum_probs=62.9

Q ss_pred             eeecCCCcCcCCcccccccccccC--CCeEEEecc------------------------------ccCCCCCCcccCccc
Q psy10674          2 TLAENKTFHVKHFCCYECDKKVQF--ENYTGKITQ------------------------------SQESEVLWHPQCFVC   49 (138)
Q Consensus         2 ~~a~g~~~h~~~~~C~~C~~~i~~--~~~~~~~~~------------------------------~~~~~~~~H~~Cf~C   49 (138)
                      |.|+|+.||++||+|..|+++|.+  ..++...++                              ..+.+..||++||+|
T Consensus        18 ~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C   97 (131)
T 2xjy_A           18 LKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKC   97 (131)
T ss_dssp             EEETTEEEETTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEECTTSEEEEETTEEEEGGGCBC
T ss_pred             EEECCCcccHHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccCccceeEeeCCceECccCccc
Confidence            689999999999999999999963  234332111                              125678999999999


Q ss_pred             ccCCccc-cCCceeeeCCeeecHHHHHhhc
Q psy10674         50 STCDELL-VDLMYFHYKGNVYCLRDYATML   78 (138)
Q Consensus        50 ~~C~~~l-~~~~~~~~~~~~yC~~c~~~~~   78 (138)
                      ..|+++| .+..|+..++++||..||.+++
T Consensus        98 ~~C~~~L~~g~~f~~~~~~~~C~~c~~~~~  127 (131)
T 2xjy_A           98 AACQKHFCVGDRYLLINSDIVCEQDIYEWT  127 (131)
T ss_dssp             TTTCCBCCTTCEEEEETTEEEEGGGHHHHH
T ss_pred             CCCCCCCCCCCEEEEECCEEEcHHHHHHHh
Confidence            9999999 4667999999999999998876

>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.62  E-value=4.1e-16  Score=92.57  Aligned_cols=67  Identities=22%  Similarity=0.587  Sum_probs=55.9

Q ss_pred             CCcccccccccccCCCeEEEeccccCCCCCCcccCcccccCCccccCCceeeeCCeeecHHHHHhhcCCCccc
Q psy10674         12 KHFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCH   84 (138)
Q Consensus        12 ~~~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~~C~   84 (138)
                      ...+|..|+++|.+.+.++.+     .+..||++||+|..|+++|.+..|+.+++++||+.||.++++ ++|+
T Consensus        10 ~~~~C~~C~~~I~~~~~~~~a-----~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~-~~C~   76 (77)
T 1g47_A           10 ASATCERCKGGFAPAEKIVNS-----NGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFA-PCWI   76 (77)
T ss_dssp             CCCBCSSSCCBCCSTTTCEEE-----TTEEECTTTCCCTTTCCCCGGGCSEEETTEEECHHHHHHHCC-CC--
T ss_pred             CCCCchhcCCccCCCceEEEe-----CccEeccccCeECCCCCCCCCCCeEeECCeEeCHHHHHHHhh-cccC
Confidence            457899999999865555433     466999999999999999988789999999999999999995 7885

>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.62  E-value=4.1e-16  Score=93.37  Aligned_cols=66  Identities=24%  Similarity=0.563  Sum_probs=57.0

Q ss_pred             CCcccccccccccCCCeEEEeccccCCCCCCcccCcccccCCccccCCceeeeCCeeecHHHHHhhcCCCcccc
Q psy10674         12 KHFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHA   85 (138)
Q Consensus        12 ~~~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~~C~~   85 (138)
                      ...+|..|+++|.+++++..      ++..||++||+|..|+++|.+ .|+.+++++||+.||.++++ ++|++
T Consensus        14 ~~~~C~~C~~~I~~~~~v~a------~~~~wH~~CF~C~~C~~~L~~-~~~~~~g~~yC~~~y~~~fg-~~C~~   79 (80)
T 2dj7_A           14 GPSHCAGCKEEIKHGQSLLA------LDKQWHVSCFKCQTCSVILTG-EYISKDGVPYCESDYHAQFG-SGPSS   79 (80)
T ss_dssp             SCSCCTTTCCCCSSSCCEEE------TTEEECTTTCBCSSSCCBCSS-CCEEETTEEECTTHHHHHTT-CCSTT
T ss_pred             CCCCCcCcCCeeCCCeEEEE------CCcccccccCCcCcCCCCcCC-CeEEECCEEECHHHHHHHcC-CCCCC
Confidence            35689999999987777655      355999999999999999986 58999999999999999996 78864

>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.62  E-value=4.5e-16  Score=90.58  Aligned_cols=65  Identities=23%  Similarity=0.593  Sum_probs=56.2

Q ss_pred             CcccccccccccCCCeEEEeccccCCCCCCcccCcccccCCccccCCceeeeCCeeecHHHHHhhcCCCcccc
Q psy10674         13 HFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHA   85 (138)
Q Consensus        13 ~~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~~C~~   85 (138)
                      ..+|..|+++|. ++.+..      ++..||++||+|..|+++|.+..|+.+++++||+.||.++++ ++|++
T Consensus         5 ~~~C~~C~~~I~-~~~~~a------~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~-~~C~g   69 (69)
T 2cur_A            5 SSGCVKCNKAIT-SGGITY------QDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVS-GPSSG   69 (69)
T ss_dssp             CCCCSSSCCCCC-TTCEEE------TTEEECTTTTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHHT-CSCCC
T ss_pred             cCCCcccCCEeC-cceEEE------CccccccCcCEECCCCCCCCCCccEeECCEEECHHHhHHHhc-CCCCC
Confidence            467999999998 455544      466999999999999999988889999999999999999995 79864

>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.60  E-value=7e-16  Score=89.96  Aligned_cols=65  Identities=23%  Similarity=0.557  Sum_probs=55.7

Q ss_pred             CcccccccccccCCCeEEEeccccCCCCCCcccCcccccCCccccCCceeeeCCeeecHHHHHhhcCCCcccc
Q psy10674         13 HFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHA   85 (138)
Q Consensus        13 ~~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~~C~~   85 (138)
                      ..+|..|+++|. ++.+..      +++.||++||+|..|+++|.+..|+.+++++||+.||.++++ ++|++
T Consensus         5 ~~~C~~C~~~I~-~~~~~a------~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~-~~c~~   69 (70)
T 2d8z_A            5 SSGCVQCKKPIT-TGGVTY------REQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYA-SGPSS   69 (70)
T ss_dssp             CCBCSSSCCBCC-SSEEES------SSSEEETTTSBCSSSCCBCTTSCCEESSSSEECHHHHHHHTC-CCCTT
T ss_pred             CCCCcccCCeec-cceEEE------CccccCCCCCccCCCCCcCCcCceEeeCCeEECHHHHHHHhc-cccCC
Confidence            357999999998 455433      567999999999999999988889999999999999999995 78863

>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.60  E-value=1.1e-15  Score=89.52  Aligned_cols=67  Identities=24%  Similarity=0.450  Sum_probs=55.9

Q ss_pred             CcccccccccccCCCeEEEeccccCCCCCCcccCcccccCCccccCCceeeeCCeeecHHHHHhhcCCCccccc
Q psy10674         13 HFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHAC   86 (138)
Q Consensus        13 ~~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~~C~~C   86 (138)
                      ..+|..|+++|.+.+.++.+     ++..||++||+|..|+++|.+..|+.+++++||+.||.+++  .+|+.+
T Consensus         5 ~~~C~~C~~~I~~~~~~~~a-----~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~--~~~~~~   71 (72)
T 1x61_A            5 SSGCGGCGEDVVGDGAGVVA-----LDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATL--ESGPSS   71 (72)
T ss_dssp             CCCCSSSCSCCCSSSCCEEC-----SSSEECTTTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHH--HTCSSC
T ss_pred             CCCCccCCCccCCCceEEEE-----CCCeEcccCCcccccCCcCCcCcCEeeCCeEECHHHHHHHH--ccCCCC
Confidence            46899999999865544332     46699999999999999998888999999999999999988  466654

>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.60  E-value=1.1e-15  Score=93.44  Aligned_cols=66  Identities=20%  Similarity=0.533  Sum_probs=57.1

Q ss_pred             CCcccccccccccCCCeEEEeccccCCCCCCcccCcccccCCccccCCceeeeCCeeecHHHHHhhcCCCcccc
Q psy10674         12 KHFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHA   85 (138)
Q Consensus        12 ~~~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~~C~~   85 (138)
                      ...+|..|+++|. ++++..      ++..||++||+|..|+++|.+..|+.+++++||+.||.++++ ++|+.
T Consensus        24 ~~~~C~~C~~~I~-~~~v~a------~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~-~~c~s   89 (90)
T 2dar_A           24 RTPMCAHCNQVIR-GPFLVA------LGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFFA-SGPSS   89 (90)
T ss_dssp             CCCBBSSSCCBCC-SCEEEE------TTEEECTTTCBCSSSCCBCSSSCBEESSSCEECHHHHHHHTS-CCCCC
T ss_pred             CCCCCccCCCEec-ceEEEE------CCccccccCCccCCCCCCCCCCEeEeECCEEECHHHHHHHcC-CCCCC
Confidence            3568999999997 666654      456999999999999999988889999999999999999995 78863

>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.59  E-value=1.2e-15  Score=89.38  Aligned_cols=65  Identities=20%  Similarity=0.434  Sum_probs=54.0

Q ss_pred             CcccccccccccC--CCeEEEeccccCCCCCCcccCcccccCCccccCCceeeeCCeeecHHHHHhhcCCCcc
Q psy10674         13 HFCCYECDKKVQF--ENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRC   83 (138)
Q Consensus        13 ~~~C~~C~~~i~~--~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~~C   83 (138)
                      ..+|..|+++|.+  ++.++.+     +++.||++||+|..|+++|.+..|+.+++++||+.||.++++ +++
T Consensus         5 ~~~C~~C~~~I~~~~~~~~~~a-----~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~-p~~   71 (72)
T 1x4l_A            5 SSGCAGCTNPISGLGGTKYISF-----EERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDISG-PSS   71 (72)
T ss_dssp             SCSBTTTTBCCCCSSSCSCEEC-----SSCEECTTTCBCSSSCCBCTTSCCEECSSSEECHHHHHTCCC-SSC
T ss_pred             CCCCcCCCccccCCCCcceEEE-----CCcccCcccCEeccCCCcCCCCccEeECCEEEChhHcCcccC-CCC
Confidence            4689999999995  3333332     466999999999999999988889999999999999999985 554

>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.59  E-value=7.8e-16  Score=91.23  Aligned_cols=56  Identities=16%  Similarity=0.332  Sum_probs=50.3

Q ss_pred             hcCCCcccccCccccc---CcEEEeCCCccccCCccccccccccCCCCeeecCCCCCccCC
Q psy10674         77 MLDIPRCHACDELIFV---NEYTLAENKTFHVKHFCCYECDKELCNQSYIPVTESRPGQDS  134 (138)
Q Consensus        77 ~~~~~~C~~C~~~I~~---~~~~~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~~~~~y~~~  134 (138)
                      ++ +++|++|+++|.+   .+++.++++.||++||+|..|+++|.+..|++.+ |+|||..
T Consensus         3 ~~-~~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~-g~~yC~~   61 (76)
T 1x68_A            3 SG-SSGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLTQN-KEIFCQK   61 (76)
T ss_dssp             TC-CCCCTTTCCCCCTTTTCCEEEETTEEEEGGGCBCTTTCCBCSSSCEEEET-TEEEETT
T ss_pred             cc-CCCCccCCCcccCCCCceeEEECCcccCcccCChhhCCCcCCCCceEeEC-CEEECHH
Confidence            45 4899999999985   3677799999999999999999999999999998 9999975

>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A

Probab=99.59  E-value=1.5e-15  Score=102.93  Aligned_cols=105  Identities=16%  Similarity=0.302  Sum_probs=71.7

Q ss_pred             eeecCCCcCcCCcccccccccccCCCeEEEecc----------------------------ccCCCCCCcccCcccccCC
Q psy10674          2 TLAENKTFHVKHFCCYECDKKVQFENYTGKITQ----------------------------SQESEVLWHPQCFVCSTCD   53 (138)
Q Consensus         2 ~~a~g~~~h~~~~~C~~C~~~i~~~~~~~~~~~----------------------------~~~~~~~~H~~Cf~C~~C~   53 (138)
                      |.|+|+.||++||+|..|+++|....+ ...++                            ..+++..||++||+|..|+
T Consensus        22 ~~a~~~~wH~~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~f~~~C~~C~~~I~~~~~v~~a~~~~~H~~CF~C~~C~  100 (169)
T 2rgt_A           22 LKALDRHWHSKCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCK  100 (169)
T ss_dssp             EECSSCEECTTTSBCTTTCCBCCSCCE-ESSSCEECHHHHHHHHSCBCTTTCCBCCTTSEEEEETTEEEEGGGCBCTTTC
T ss_pred             EEECCcEEccccCccCCCCCcCCCCCc-ccCCeeeecccccccccccccccccccCCCcEEEEcCCceEeeCCCcCCCCC
Confidence            679999999999999999999985443 22111                            1256789999999999999


Q ss_pred             cccc-CCceee-eCCeeecHHHHHhhcCCCcccccCcccccCcEEEeCCCccccCCcc
Q psy10674         54 ELLV-DLMYFH-YKGNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFC  109 (138)
Q Consensus        54 ~~l~-~~~~~~-~~~~~yC~~c~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~  109 (138)
                      ++|. +..|+. .++++||..||.+++. ..+.. ...-..+..+.+.....|...|.
T Consensus       101 ~~L~~g~~f~~~~~g~~~C~~c~~~~~~-~~~~~-~~~~rprt~~~~~q~~~l~~~f~  156 (169)
T 2rgt_A          101 RQLATGDEFYLMEDSRLVCKADYETAKQ-GGSGG-SGGSGGGTPMVAASPERHDGGLQ  156 (169)
T ss_dssp             CBCCTTCEEEECTTSCEEEHHHHHHHHH-CC-----------EEEECCCCEECCSSCC
T ss_pred             CCCCCCCceEEccCCeEECHHHHHHHhh-ccCCC-CCCcCCCCcccHHHHHHHHHHHh
Confidence            9996 455654 6899999999988763 23321 11112223444666677777665

>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B

Probab=99.58  E-value=4.8e-16  Score=89.67  Aligned_cols=52  Identities=27%  Similarity=0.494  Sum_probs=48.1

Q ss_pred             CCcccccCcccccCcEEEeCCCccccCCccccccccccCCCCeeecCCCCCccC
Q psy10674         80 IPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYIPVTESRPGQD  133 (138)
Q Consensus        80 ~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~~~~~y~~  133 (138)
                      +++|++|+++|. ++++.++|+.||++||+|..|+++|.+..|++.+ |+|||.
T Consensus         5 ~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~-g~~yC~   56 (66)
T 1nyp_A            5 VPICGACRRPIE-GRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERK-GLAYCE   56 (66)
T ss_dssp             CCEETTTTEECC-SCEECCTTSBEETTTCBCTTTCCBCSSSCCEEET-TEEECH
T ss_pred             CCCCcccCCEec-ceEEEECccccccCcCEECCCCCCCCCCceEeEC-CcEECH
Confidence            479999999998 5677799999999999999999999999999998 999995

>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.58  E-value=5.3e-16  Score=91.32  Aligned_cols=53  Identities=17%  Similarity=0.299  Sum_probs=48.3

Q ss_pred             CCcccccCcccccCcEEEeCCCccccCCccccccccccC-CCCeeecCCCCCccCC
Q psy10674         80 IPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELC-NQSYIPVTESRPGQDS  134 (138)
Q Consensus        80 ~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~l~-~~~f~~~~~~~~y~~~  134 (138)
                      +++|++|+++|.+ .++.|+++.||++||+|..|+++|. +..|++.+ |+|||..
T Consensus         5 ~~~C~~C~~~I~~-~~v~a~~~~wH~~CF~C~~C~~~L~~~~~f~~~~-~~~yC~~   58 (73)
T 1wig_A            5 SSGCDSCEKYITG-RVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQG-SSIWHPA   58 (73)
T ss_dssp             CCSCSSSCCCCSS-CCBCCSSCCBCTTTSCCSSSCCCCCSSCCCEEET-TEEECTT
T ss_pred             cCCcccCCCEecC-eeEEeCCCCCCCCcCEeCCCCCCCCCCCeeEeeC-CEEEChH
Confidence            4899999999977 5667999999999999999999999 88899988 9999975

>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.58  E-value=8.2e-16  Score=91.11  Aligned_cols=53  Identities=21%  Similarity=0.407  Sum_probs=49.6

Q ss_pred             CCcccccCcccccCcEEEeCCCccccCCccccccccccCCCCeeecCCCCCccC
Q psy10674         80 IPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYIPVTESRPGQD  133 (138)
Q Consensus        80 ~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~~~~~y~~  133 (138)
                      +++|++|+++|.+++++.++++.||++||+|..|+++|.+..|++.+ |+|||.
T Consensus         9 ~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~-g~~yC~   61 (76)
T 2cu8_A            9 ASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHD-GKPFCH   61 (76)
T ss_dssp             CCBCTTTCCBCCTTTEEEETTEEEETTTCBCSSSCCBCCTTSCEEET-TEEECT
T ss_pred             CCCCcCCCCEeECCeEEEECCeEeeCCCCCCCCCCCccCCCceEeEC-CEEecc
Confidence            47999999999877888899999999999999999999998999998 999996

>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.58  E-value=6.2e-16  Score=92.89  Aligned_cols=66  Identities=18%  Similarity=0.420  Sum_probs=56.1

Q ss_pred             cccccccccccCCCeEEEeccccCCCCCCcccCcccccCCccccCCceeeeCCeeecHHHHHhhcCCCcccc
Q psy10674         14 FCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHA   85 (138)
Q Consensus        14 ~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~~C~~   85 (138)
                      .+|..|+++|.+++.++.+     ++..||++||+|..|+++|.+..|+.+++++||+.||.++++ ++|++
T Consensus        16 ~~C~~C~~~I~~~~~~~~a-----~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~~C~~c~~~~~~-~~C~~   81 (82)
T 2ehe_A           16 NTCAECQQLIGHDSRELFY-----EDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFS-SGPSS   81 (82)
T ss_dssp             CBCTTTCCBCCSSCCBCCC-----SSCCCBTTTSBCTTTCCBCSSCCEEEETTEEEETTTSSCCGG-GSSCC
T ss_pred             CcCccCCCccccCcEEEEe-----CCccccccCCeecCCCCccCCCccEeeCCEEECHHHHhhhcC-CCCCC
Confidence            5799999999854444332     467999999999999999988889999999999999999995 78864

>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.58  E-value=1.4e-15  Score=89.21  Aligned_cols=53  Identities=19%  Similarity=0.399  Sum_probs=48.3

Q ss_pred             CCcccccCccccc---CcEEEeCCCccccCCccccccccccCCCCeeecCCCCCccC
Q psy10674         80 IPRCHACDELIFV---NEYTLAENKTFHVKHFCCYECDKELCNQSYIPVTESRPGQD  133 (138)
Q Consensus        80 ~~~C~~C~~~I~~---~~~~~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~~~~~y~~  133 (138)
                      +++|.+|+++|.+   +.++.++++.||++||+|..|+++|.+..|++.+ |+|||.
T Consensus         5 ~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~-g~~yC~   60 (72)
T 1x4l_A            5 SSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLTER-DDILCP   60 (72)
T ss_dssp             SCSBTTTTBCCCCSSSCSCEECSSCEECTTTCBCSSSCCBCTTSCCEECS-SSEECH
T ss_pred             CCCCcCCCccccCCCCcceEEECCcccCcccCEeccCCCcCCCCccEeEC-CEEECh
Confidence            5799999999985   3677799999999999999999999999999988 999994

>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.58  E-value=3.7e-15  Score=89.43  Aligned_cols=66  Identities=21%  Similarity=0.483  Sum_probs=56.4

Q ss_pred             CcccccccccccCCCeEEEeccccCCCCCCcccCcccccCCccccCCceeeeCCeeecHHHHHhhcCCCccc
Q psy10674         13 HFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCH   84 (138)
Q Consensus        13 ~~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~~C~   84 (138)
                      ..+|..|+++|.+++.++.+     ++..||++||+|..|+++|.+..|+.+++++||+.||.++++ +++.
T Consensus        15 ~~~C~~C~~~I~~~~~~~~a-----~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~-~~~~   80 (82)
T 1x63_A           15 SPKCKGCFKAIVAGDQNVEY-----KGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFA-SGPS   80 (82)
T ss_dssp             SCBCSSSCCBCCSSSCEEEC-----SSCEEETTTCCCSSSCCCCTTSCEEEETTEEEEHHHHHHHTS-CCCS
T ss_pred             CCcCccCCcccccCceEEEE-----CccccccccCchhhCCCccCCCccEeeCCEEECHHHHHHHhC-CCCC
Confidence            46899999999976654433     467999999999999999988889999999999999999995 6664

>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}

Probab=99.58  E-value=7e-16  Score=88.80  Aligned_cols=53  Identities=25%  Similarity=0.399  Sum_probs=48.6

Q ss_pred             CCcccccCccccc-CcEEEeCCCccc--cCCccccccccccCCCCeeecCCCCCccC
Q psy10674         80 IPRCHACDELIFV-NEYTLAENKTFH--VKHFCCYECDKELCNQSYIPVTESRPGQD  133 (138)
Q Consensus        80 ~~~C~~C~~~I~~-~~~~~~~~~~~H--~~CF~C~~C~~~l~~~~f~~~~~~~~y~~  133 (138)
                      +++|++|+++|.+ +.++.++|+.||  ++||+|..|+++|.+..|++.+ |+|||.
T Consensus         2 a~~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~~L~~~~f~~~~-g~~yC~   57 (65)
T 2iyb_E            2 AVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVE-GMVFCS   57 (65)
T ss_dssp             CEECTTTSSEECTTSCEEEETTEEEETTTTTSBCTTTCCBCTTSCCEEET-TEEESS
T ss_pred             cCCCcCCCCeeccCceEEEECCCccCCCCCCEECCCCCCcCCCCceEEEC-CEEecC
Confidence            4799999999986 367779999999  9999999999999999999999 999994

>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.57  E-value=2.2e-15  Score=90.03  Aligned_cols=64  Identities=27%  Similarity=0.629  Sum_probs=55.8

Q ss_pred             cccccccccccCCCeEEEeccccCCCCCCcccCcccccCCccccCCceeeeCCeeecHHHHHhhcCCCcccc
Q psy10674         14 FCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHA   85 (138)
Q Consensus        14 ~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~~C~~   85 (138)
                      .+|..|+++|.+ +.+..      ++..||++||+|..|+++|.+..|+.+++++||+.||.++++ ++|++
T Consensus        16 ~~C~~C~~~I~~-~~v~a------~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~f~-~~C~~   79 (80)
T 1x3h_A           16 PKCGGCNRPVLE-NYLSA------MDTVWHPECFVCGDCFTSFSTGSFFELDGRPFCELHYHHRRG-SGPSS   79 (80)
T ss_dssp             CBCTTTCCBCCS-SCEEE------TTEEECTTTCBCSSSCCBSCSSCCEESSSCEECHHHHHHHHS-SSCCC
T ss_pred             CccccCCCeecc-eeEEE------CCCeEecCcCChhhCCCCCCCCcEEeECCEEECHHHHHHHcC-CCCCC
Confidence            589999999995 55544      466999999999999999988789999999999999999996 78864

>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B

Probab=99.57  E-value=1.6e-15  Score=87.50  Aligned_cols=60  Identities=22%  Similarity=0.581  Sum_probs=52.6

Q ss_pred             CcccccccccccCCCeEEEeccccCCCCCCcccCcccccCCccccCCceeeeCCeeecHHHHHhhcC
Q psy10674         13 HFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLD   79 (138)
Q Consensus        13 ~~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~   79 (138)
                      ..+|..|+++|. ++.+..      ++..||++||+|..|+++|.+..|+.+++++||+.||.++++
T Consensus         5 ~~~C~~C~~~I~-~~~~~a------~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~   64 (66)
T 1nyp_A            5 VPICGACRRPIE-GRVVNA------MGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFG   64 (66)
T ss_dssp             CCEETTTTEECC-SCEECC------TTSBEETTTCBCTTTCCBCSSSCCEEETTEEECHHHHHHHCS
T ss_pred             CCCCcccCCEec-ceEEEE------CccccccCcCEECCCCCCCCCCceEeECCcEECHHHHHHHhC
Confidence            367999999999 665433      567999999999999999988889999999999999999985

>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3

Probab=99.56  E-value=1.5e-15  Score=89.92  Aligned_cols=52  Identities=23%  Similarity=0.511  Sum_probs=48.5

Q ss_pred             CcccccCcccccCcEEEeCCCccccCCccccccccccCCCCeeecCCCCCccC
Q psy10674         81 PRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYIPVTESRPGQD  133 (138)
Q Consensus        81 ~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~~~~~y~~  133 (138)
                      |+|++|+++|.+++++.++|+.||++||+|..|+++|.+..|+..+ |+|||.
T Consensus         1 p~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~-g~~yC~   52 (76)
T 1iml_A            1 PKCPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHE-GKPYCN   52 (76)
T ss_dssp             CBCTTTSSBCCGGGEEEETTEEEETTTCBCTTTCCBCCTTTEEEET-TEEEET
T ss_pred             CcCCCCCCEEECceEEEECCccccCCCCCccccCccCCCCceECcC-CeEeeC
Confidence            5899999999877888899999999999999999999988999988 999996

>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.56  E-value=1.8e-15  Score=90.56  Aligned_cols=53  Identities=32%  Similarity=0.513  Sum_probs=48.2

Q ss_pred             CCcccccCcccccCcEEEeCCCccccCCccccccccccCCCCeeecCCCCCccCC
Q psy10674         80 IPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYIPVTESRPGQDS  134 (138)
Q Consensus        80 ~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~~~~~y~~~  134 (138)
                      .++|.+|+++|.+++++.++++.||++||+|..|+++|.+ .|++.+ |+|||..
T Consensus        15 ~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~-~~~~~~-g~~yC~~   67 (80)
T 2dj7_A           15 PSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTG-EYISKD-GVPYCES   67 (80)
T ss_dssp             CSCCTTTCCCCSSSCCEEETTEEECTTTCBCSSSCCBCSS-CCEEET-TEEECTT
T ss_pred             CCCCcCcCCeeCCCeEEEECCcccccccCCcCcCCCCcCC-CeEEEC-CEEECHH
Confidence            4799999999987778889999999999999999999986 698888 9999964

>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.56  E-value=6.1e-15  Score=88.32  Aligned_cols=67  Identities=16%  Similarity=0.429  Sum_probs=55.6

Q ss_pred             cCCcccccccccccCCCeEEEeccccCCCCCCcccCcccccCCccccCCceeee-CCeeecHHHHHhhcCCCcccc
Q psy10674         11 VKHFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHY-KGNVYCLRDYATMLDIPRCHA   85 (138)
Q Consensus        11 ~~~~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~-~~~~yC~~c~~~~~~~~~C~~   85 (138)
                      ....+|..|+++|. ++++..      ++..||++||+|..|+++|.+..|+.. ++++||+.||.++++ ++|++
T Consensus        13 ~~~~~C~~C~~~I~-~~~~~a------~~~~~H~~CF~C~~C~~~L~~~~f~~~~~g~~yC~~cy~~~f~-~~C~~   80 (81)
T 2dlo_A           13 ATLEKCATCSQPIL-DRILRA------MGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRKFA-SGPSS   80 (81)
T ss_dssp             SSCCBCTTTCCBCC-SCCEEE------TTEEECTTTCBCSSSCCBCTTSCEECCTTCCCEEHHHHHHHTT-SSSCC
T ss_pred             cCCCccccCCCeec-ceeEEE------CCccccHHhcCcccCCCccCCCeeEECCCCEEECHHHHHHHhc-CcCCC
Confidence            34568999999998 455444      466999999999999999988777765 789999999999995 78864

>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.56  E-value=2.9e-15  Score=87.77  Aligned_cols=53  Identities=26%  Similarity=0.508  Sum_probs=48.3

Q ss_pred             CCcccccCcccccC-cEEEeCCCccccCCccccccccccCCCCeeecCCCCCccC
Q psy10674         80 IPRCHACDELIFVN-EYTLAENKTFHVKHFCCYECDKELCNQSYIPVTESRPGQD  133 (138)
Q Consensus        80 ~~~C~~C~~~I~~~-~~~~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~~~~~y~~  133 (138)
                      +++|.+|+++|.+. .++.++++.||++||+|..|+++|.+..|+..+ |+|||.
T Consensus         5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~-~~~yC~   58 (72)
T 1x61_A            5 SSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFYAVE-RRAYCE   58 (72)
T ss_dssp             CCCCSSSCSCCCSSSCCEECSSSEECTTTCBCSSSCCBCTTSCEEESS-SCEEEH
T ss_pred             CCCCccCCCccCCCceEEEECCCeEcccCCcccccCCcCCcCcCEeeC-CeEECH
Confidence            47999999999864 477799999999999999999999998999998 999985

>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.55  E-value=4.1e-15  Score=91.05  Aligned_cols=68  Identities=24%  Similarity=0.486  Sum_probs=58.6

Q ss_pred             CCcccccccccccCCCeEEEeccccCCCCCCcccCcccccCCccccCCceeeeCCeeecHHHHHhhcCCCccccc
Q psy10674         12 KHFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHAC   86 (138)
Q Consensus        12 ~~~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~~C~~C   86 (138)
                      ...+|..|+++|.+.+.+..      ++..||++||+|..|+++|.+..|+.+++++||+.||.++++ ++|..+
T Consensus        14 ~~~~C~~C~~~I~~~~~v~a------~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~-~kc~~~   81 (91)
T 2d8y_A           14 ARETCVECQKTVYPMERLLA------NQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFK-SKGNYD   81 (91)
T ss_dssp             SSCBCTTTCCBCCTTSEEEC------SSSEEETTTCBCTTTCCBCCTTTCCCSSSCCCCHHHHHHHSC-CCSCCC
T ss_pred             CCCcCccCCCccCCceeEEE------CCCEECCCCCeeCCCCCCCCCCCcEeECCEEECHHHHHHHhC-CCcCcc
Confidence            35789999999997676543      467999999999999999988789999999999999999995 788733

>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B

Probab=99.55  E-value=6.6e-15  Score=86.04  Aligned_cols=63  Identities=22%  Similarity=0.609  Sum_probs=54.4

Q ss_pred             cCCcccccccccccCCCeEEEeccccCCCCCCcccCcccccCCccccCCceeeeCCeeecHHHHHhhc
Q psy10674         11 VKHFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATML   78 (138)
Q Consensus        11 ~~~~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~   78 (138)
                      +...+|..|+++|.+++.++.+     .+..||++||+|..|+++|.+..|+.+++++||+.||.++|
T Consensus         9 ~~~~~C~~C~~~i~~~e~~~~~-----~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~lf   71 (72)
T 3f6q_B            9 SASATCERCKGGFAPAEKIVNS-----NGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLF   71 (72)
T ss_dssp             CTTCBCTTTCCBCCTTCEEEEE-----TTEEEETTTSSCTTTCCCCGGGCCEEETTEEECHHHHHHHT
T ss_pred             cCCccchhcCccccCCceEEEe-----CcCeeCcCCCcccCCCCCCCCCCeEeECCeEeCHHHHHHhh
Confidence            3456899999999977766543     46699999999999999998778999999999999999887

>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.55  E-value=4.5e-15  Score=88.68  Aligned_cols=65  Identities=18%  Similarity=0.494  Sum_probs=55.7

Q ss_pred             CcccccccccccCCCeEEEeccccCCCCCCcccCcccccCCccccCCceeeeCCeeecHHHHHhhcCCCcccc
Q psy10674         13 HFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHA   85 (138)
Q Consensus        13 ~~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~~C~~   85 (138)
                      ..+|..|+++|.+ +.+..      ++..||++||+|..|+++|.+..|+.+++++||+.||.++++ ++|+.
T Consensus        15 ~~~C~~C~~~I~~-~~v~a------~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~-~~c~s   79 (80)
T 2cuq_A           15 APRCARCSKTLTQ-GGVTY------RDQPWHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFGELFA-SGPSS   79 (80)
T ss_dssp             SCCCTTTCCCCCS-CCEES------SSSEECTTTCBCSSSCCBCTTCCEEECSSSEEEHHHHHHHTT-CSTTC
T ss_pred             CCcCCCCCCEecC-cEEEE------CCchhhhhhCCcccCCCcCCCCeeEeECCEEECHHHHHHHcC-CCCCC
Confidence            3679999999984 54433      567999999999999999988889999999999999999995 78863

>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.55  E-value=2.4e-15  Score=88.07  Aligned_cols=55  Identities=18%  Similarity=0.383  Sum_probs=49.5

Q ss_pred             hcCCCcccccCcccccC-cEEEeCCCccccCCccccccccccCCCCeeecCCCCCccC
Q psy10674         77 MLDIPRCHACDELIFVN-EYTLAENKTFHVKHFCCYECDKELCNQSYIPVTESRPGQD  133 (138)
Q Consensus        77 ~~~~~~C~~C~~~I~~~-~~~~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~~~~~y~~  133 (138)
                      ++ +++|++|+++|.+. .++.++++.||++||+|..|+++|.+..|++.+ |+|||.
T Consensus         3 ~~-~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~-~~~yC~   58 (72)
T 1x4k_A            3 SG-SSGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIPKD-NQNFCV   58 (72)
T ss_dssp             SC-CCCBSSSCCCCCSSSCEEEETTEEEETTTTCCSSSCCCCCSSSEEEET-TEEEEH
T ss_pred             cc-CCCCccCCCcccCCceEEEECcCeecccCCcccccCCccCCCccCccC-CeEECH
Confidence            35 48999999999875 477799999999999999999999988999998 999985

>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.54  E-value=4.2e-15  Score=86.38  Aligned_cols=52  Identities=21%  Similarity=0.421  Sum_probs=47.6

Q ss_pred             CCcccccCcccccCcEEEeCCCccccCCccccccccccCCCCeeecCCCCCccC
Q psy10674         80 IPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYIPVTESRPGQD  133 (138)
Q Consensus        80 ~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~~~~~y~~  133 (138)
                      +++|++|+++|.+ +++.++++.||++||+|..|+++|.+..|++.+ |+|||.
T Consensus         5 ~~~C~~C~~~I~~-~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~-~~~yC~   56 (69)
T 2cur_A            5 SSGCVKCNKAITS-GGITYQDQPWHADCFVCVTCSKKLAGQRFTAVE-DQYYCV   56 (69)
T ss_dssp             CCCCSSSCCCCCT-TCEEETTEEECTTTTBCTTTCCBCTTSCEEECS-SCEEEH
T ss_pred             cCCCcccCCEeCc-ceEEECccccccCcCEECCCCCCCCCCccEeEC-CEEECH
Confidence            5899999999976 466799999999999999999999999999998 999994

>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.54  E-value=2.5e-15  Score=87.98  Aligned_cols=53  Identities=23%  Similarity=0.439  Sum_probs=48.4

Q ss_pred             CCcccccCcccccC-cEEEeCCCccccCCccccccccccCCCCeeecCCCCCccC
Q psy10674         80 IPRCHACDELIFVN-EYTLAENKTFHVKHFCCYECDKELCNQSYIPVTESRPGQD  133 (138)
Q Consensus        80 ~~~C~~C~~~I~~~-~~~~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~~~~~y~~  133 (138)
                      +++|.+|+++|.+. .++.++++.||++||+|..|+++|.+..|++.+ |+|||.
T Consensus         5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~-~~~yC~   58 (72)
T 1wyh_A            5 SSGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVPDK-GAHYCV   58 (72)
T ss_dssp             CCBCSSSCCBCCSSSCEECSTTCCEETTTCBCTTTCCBTTTSCEEEET-TEEEEH
T ss_pred             CCCCccCCCccccCccEEEECccccCcccCeECCCCCcCCCCccCCcC-CeEECH
Confidence            47999999999864 677799999999999999999999988999988 999985

>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A

Probab=99.54  E-value=2.4e-15  Score=90.15  Aligned_cols=53  Identities=21%  Similarity=0.385  Sum_probs=48.8

Q ss_pred             CCcccccCcccccCcEEEeCCCccccCCccccccccccCCCCeeecCCCCCccC
Q psy10674         80 IPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYIPVTESRPGQD  133 (138)
Q Consensus        80 ~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~~~~~y~~  133 (138)
                      +++|.+|+++|.+++++.+.++.||++||+|..|+++|.+..|++.+ |+|||.
T Consensus         7 ~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~-~~~yC~   59 (81)
T 1a7i_A            7 GNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHD-AEVYCK   59 (81)
T ss_dssp             -CBCSSSCCBCSSTTEEEETTEEEESSSEECSSSCCEECSSCCEEET-TEEECS
T ss_pred             CCcCcCcCccccCceeEEeCCcccccccCccCCCCCCCCCCCeEeeC-CEEECH
Confidence            47999999999877788899999999999999999999988899998 999995

>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.54  E-value=2.9e-15  Score=87.30  Aligned_cols=52  Identities=25%  Similarity=0.482  Sum_probs=47.4

Q ss_pred             CCcccccCcccccCcEEEeCCCccccCCccccccccccCCCCeeecCCCCCccC
Q psy10674         80 IPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYIPVTESRPGQD  133 (138)
Q Consensus        80 ~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~~~~~y~~  133 (138)
                      +++|.+|+++|.+ +++.++++.||++||+|..|+++|.+..|+..+ |+|||.
T Consensus         5 ~~~C~~C~~~I~~-~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~-g~~yC~   56 (70)
T 2d8x_A            5 SSGCHQCGEFIIG-RVIKAMNNSWHPECFRCDLCQEVLADIGFVKNA-GRHLCR   56 (70)
T ss_dssp             SSBCSSSCCBCCS-CCEEETTEEECTTTSBCSSSCCBCSSSCCEEET-TEEECH
T ss_pred             CCcCccCCCEecc-eEEEECcccccccCCEeCCCCCcCCCCccEeEC-CeEECH
Confidence            4799999999985 567799999999999999999999988899888 999995

>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3

Probab=99.54  E-value=8.9e-15  Score=89.16  Aligned_cols=66  Identities=23%  Similarity=0.489  Sum_probs=55.9

Q ss_pred             cCCcccccccccccCCCeEEEeccccCCCCCCcccCcccccCCccccCCceeeeCCeeecHHHHHhhcCCCccc
Q psy10674         11 VKHFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCH   84 (138)
Q Consensus        11 ~~~~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~~C~   84 (138)
                      ....+|..|+++|.+ +++..      ++..||++||+|..|+++|.+..|+.+++++||+.||.++++ +++.
T Consensus        23 ~~~~~C~~C~~~I~~-~~~~a------~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~-p~~~   88 (89)
T 1x64_A           23 QRMPLCDKCGSGIVG-AVVKA------RDKYRHPECFVCADCNLNLKQKGYFFVEGELYCETHARARTS-GPSS   88 (89)
T ss_dssp             CSCCBCTTTCCBCCS-CCEES------SSCEECTTTCCCSSSCCCTTTSCCEEETTEEECHHHHHHHSS-SCCC
T ss_pred             CcCCCcccCCCEecc-cEEEE------CCceECccCCEecCCCCCCCCCCeEeECCEEECHHHHHHHhC-CCCC
Confidence            345789999999994 55433      466999999999999999988789999999999999999995 6764

>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.54  E-value=5.4e-15  Score=86.15  Aligned_cols=52  Identities=19%  Similarity=0.333  Sum_probs=47.5

Q ss_pred             CCcccccCcccccCcEEEeCCCccccCCccccccccccCCCCeeecCCCCCccC
Q psy10674         80 IPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYIPVTESRPGQD  133 (138)
Q Consensus        80 ~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~~~~~y~~  133 (138)
                      +++|.+|+++|.+ +.+.++++.||++||+|..|+++|.+..|++.+ |+|||.
T Consensus         5 ~~~C~~C~~~I~~-~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~-~~~yC~   56 (70)
T 2d8z_A            5 SSGCVQCKKPITT-GGVTYREQPWHKECFVCTACRKQLSGQRFTARD-DFAYCL   56 (70)
T ss_dssp             CCBCSSSCCBCCS-SEEESSSSEEETTTSBCSSSCCBCTTSCCEESS-SSEECH
T ss_pred             CCCCcccCCeecc-ceEEECccccCCCCCccCCCCCcCCcCceEeeC-CeEECH
Confidence            5799999999976 457799999999999999999999999999988 999994

>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.54  E-value=4.2e-15  Score=89.34  Aligned_cols=55  Identities=22%  Similarity=0.324  Sum_probs=48.3

Q ss_pred             CCcccccCcccccCcEEEeCCCccccCCccccccccccCCCCeee-cCCCCCccCC
Q psy10674         80 IPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYIP-VTESRPGQDS  134 (138)
Q Consensus        80 ~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~l~~~~f~~-~~~~~~y~~~  134 (138)
                      +++|.+|+++|.+.++++++++.||++||+|..|+++|.+..|+. ..+|+|||..
T Consensus        15 ~~~C~~C~~~I~~~e~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~   70 (82)
T 2co8_A           15 GDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQ   70 (82)
T ss_dssp             SCBCSSSCCBCCTTTBCCBTTBCCBTTTCBCSSSCCBCCTTSEECCTTTCCCEETT
T ss_pred             CCCCcccCCCcccceEEEECCCeeCCCcCEEcCCCCCcCCCceeEeCcCCEEEChH
Confidence            479999999998777777999999999999999999999988885 2349999964

>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.53  E-value=1.4e-14  Score=84.39  Aligned_cols=60  Identities=23%  Similarity=0.544  Sum_probs=52.2

Q ss_pred             CcccccccccccCCCeEEEeccccCCCCCCcccCcccccCCccccCCceeeeCCeeecHHHHHhhcC
Q psy10674         13 HFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLD   79 (138)
Q Consensus        13 ~~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~   79 (138)
                      ..+|..|+++|. ++++..      ++..||++||+|..|+++|.+..|+.+++++||+.||.++++
T Consensus         5 ~~~C~~C~~~I~-~~~~~a------~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~   64 (70)
T 2d8x_A            5 SSGCHQCGEFII-GRVIKA------MNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKA   64 (70)
T ss_dssp             SSBCSSSCCBCC-SCCEEE------TTEEECTTTSBCSSSCCBCSSSCCEEETTEEECHHHHHHHHC
T ss_pred             CCcCccCCCEec-ceEEEE------CcccccccCCEeCCCCCcCCCCccEeECCeEECHHHhhhhcC
Confidence            467999999998 555544      456999999999999999988888899999999999999985

>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.53  E-value=3.7e-15  Score=88.93  Aligned_cols=66  Identities=20%  Similarity=0.438  Sum_probs=55.5

Q ss_pred             cCCcccccccccccCCCeEEEeccccCCCCCCcccCcccccCCccccCCceeeeCCeeecHHHHHhhcCCCccc
Q psy10674         11 VKHFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCH   84 (138)
Q Consensus        11 ~~~~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~~C~   84 (138)
                      +...+|..|+++|.+ +++..      ++..||++||+|..|+++|.+..|+.+++++||+.||.++++ +++.
T Consensus        13 ~~~~~C~~C~~~I~~-~~~~a------~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~-p~g~   78 (79)
T 1x62_A           13 QKLPMCDKCGTGIVG-VFVKL------RDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHARERVS-GPSS   78 (79)
T ss_dssp             CCCCCCSSSCCCCCS-SCEEC------SSCEECTTTTSCSSSCCCHHHHCCEESSSCEECHHHHHHHHS-SCCC
T ss_pred             CCCCccccCCCCccC-cEEEE------CcceeCcCcCeeCCCCCCCCCCCeEeECCEEECHHHHHHHhC-CCCC
Confidence            345789999999994 55433      466999999999999999987789999999999999999995 6653

>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}

Probab=99.53  E-value=7.5e-15  Score=100.57  Aligned_cols=75  Identities=20%  Similarity=0.518  Sum_probs=60.0

Q ss_pred             eeecCCCcCcCCcccccccccccCCCeEEEecc----------------------------ccCCCCCCcccCcccccCC
Q psy10674          2 TLAENKTFHVKHFCCYECDKKVQFENYTGKITQ----------------------------SQESEVLWHPQCFVCSTCD   53 (138)
Q Consensus         2 ~~a~g~~~h~~~~~C~~C~~~i~~~~~~~~~~~----------------------------~~~~~~~~H~~Cf~C~~C~   53 (138)
                      +.|+|+.||+.||+|..|+++|....+ ...++                            ..+.+..||++||+|..|+
T Consensus        76 ~~a~~~~wH~~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~f~~kC~~C~~~I~~~~~v~~a~~~~~H~~CF~C~~C~  154 (182)
T 2jtn_A           76 LKALDRHWHSKCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCK  154 (182)
T ss_dssp             EEETTEEECSSTTSCTTTCCCCSSCCE-EETTEEECHHHHHHTTSCCCTTTCCCCCSSCCCCEETTEECCTTTCCCTTTC
T ss_pred             EEecCCeEccccCccCCCCCccCCCce-eECCEeeecCccccccccccccCCCccCCCceEEecCCCCEEeCCCcCCCCC
Confidence            579999999999999999999986554 22211                            1256779999999999999


Q ss_pred             cccc-CCceee-eCCeeecHHHHHhh
Q psy10674         54 ELLV-DLMYFH-YKGNVYCLRDYATM   77 (138)
Q Consensus        54 ~~l~-~~~~~~-~~~~~yC~~c~~~~   77 (138)
                      ++|. +..|+. .++++||..||.++
T Consensus       155 ~~L~~g~~f~~~~~g~~yC~~cy~~~  180 (182)
T 2jtn_A          155 RQLATGDEFYLMEDSRLVCKADYETA  180 (182)
T ss_dssp             CCCCTTCEEEECTTSCEECHHHHHHH
T ss_pred             CCCCCCCceEEccCCEEECHHHHHHh
Confidence            9996 455654 68999999999765

>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.51  E-value=1.2e-14  Score=88.94  Aligned_cols=53  Identities=25%  Similarity=0.518  Sum_probs=49.0

Q ss_pred             CCcccccCcccccCcEEEeCCCccccCCccccccccccCCCCeeecCCCCCccC
Q psy10674         80 IPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYIPVTESRPGQD  133 (138)
Q Consensus        80 ~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~~~~~y~~  133 (138)
                      .++|.+|+++|.+.+++.++++.||++||+|..|+++|.+..|++.+ |+|||.
T Consensus        15 ~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~-g~~yC~   67 (91)
T 2d8y_A           15 RETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLH-GRIYCK   67 (91)
T ss_dssp             SCBCTTTCCBCCTTSEEECSSSEEETTTCBCTTTCCBCCTTTCCCSS-SCCCCH
T ss_pred             CCcCccCCCccCCceeEEECCCEECCCCCeeCCCCCCCCCCCcEeEC-CEEECH
Confidence            47999999999887888899999999999999999999988899888 999994

>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.51  E-value=1.2e-14  Score=88.68  Aligned_cols=55  Identities=18%  Similarity=0.460  Sum_probs=48.9

Q ss_pred             hhcCCCcccccCcccccCcEEEeCCCccccCCccccccccccCCCCeeecCCCCCccC
Q psy10674         76 TMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYIPVTESRPGQD  133 (138)
Q Consensus        76 ~~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~~~~~y~~  133 (138)
                      ..+ +++|++|+++|. ++++.++++.||++||+|..|+++|.+..|++.+ |+|||.
T Consensus        22 ~~~-~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~-g~~yC~   76 (90)
T 2dar_A           22 GKR-TPMCAHCNQVIR-GPFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEK-GALYCE   76 (90)
T ss_dssp             TTC-CCBBSSSCCBCC-SCEEEETTEEECTTTCBCSSSCCBCSSSCBEESS-SCEECH
T ss_pred             CCC-CCCCccCCCEec-ceEEEECCccccccCCccCCCCCCCCCCEeEeEC-CEEECH
Confidence            444 589999999996 4677799999999999999999999998999888 999994

>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.51  E-value=3.1e-14  Score=84.89  Aligned_cols=65  Identities=23%  Similarity=0.441  Sum_probs=53.5

Q ss_pred             cCCcccccccccccCCCeEEEeccccCCCCCCcccCcccccCCccccCCceeeeCCeeecHHHHHhhcCCCccc
Q psy10674         11 VKHFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCH   84 (138)
Q Consensus        11 ~~~~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~~C~   84 (138)
                      ....+|..|+++|. ++.+..      ++..||++||+|..|+++|.+. ++.+++++||..||.+++ ++.+.
T Consensus        13 ~~~~~C~~C~~~I~-~~~v~a------~~~~~H~~CF~C~~C~~~L~~~-~f~~~g~~yC~~cy~~~f-~p~~s   77 (79)
T 2cor_A           13 LGKYICQKCHAIID-EQPLIF------KNDPYHPDHFNCANCGKELTAD-ARELKGELYCLPCHDKMG-VSGPS   77 (79)
T ss_dssp             CCCCBCTTTCCBCC-SCCCCC------SSSCCCTTTSBCSSSCCBCCTT-CEEETTEEECHHHHHTTS-CCSSC
T ss_pred             cCCCCCccCCCEec-ceEEEE------CcceeCCCCCEeCCCCCccCCC-CEeECCEEeCHHHHHHhC-CCCCC
Confidence            34578999999999 555433      5679999999999999999876 459999999999999998 45543

>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}

Probab=99.50  E-value=1.3e-14  Score=93.46  Aligned_cols=53  Identities=19%  Similarity=0.256  Sum_probs=48.4

Q ss_pred             CCcccccCcccccCcEEEeCCCccccCCccccccccccC--CCCeeecCCCCCccC
Q psy10674         80 IPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELC--NQSYIPVTESRPGQD  133 (138)
Q Consensus        80 ~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~l~--~~~f~~~~~~~~y~~  133 (138)
                      +++|++|+++|.++.++.|+++.||++||+|..|+++|.  +..|+..+ |+|||.
T Consensus        61 ~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~~g~~f~~~d-g~~yC~  115 (123)
T 2l4z_A           61 WKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKS-GMILCR  115 (123)
T ss_dssp             CSBBSSSSSBCCSSSEEEETTEEEETTTSBCTTTCCBGGGTTCCCBCSS-SCCBCH
T ss_pred             CCcCcCCCCCcCCcEEEEeCCcEEcccccCcCcCCCcccccCCceEEEC-CEEeCH
Confidence            479999999999877788999999999999999999997  57899988 999995

>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3

Probab=99.50  E-value=1.7e-14  Score=91.85  Aligned_cols=53  Identities=17%  Similarity=0.238  Sum_probs=48.2

Q ss_pred             CCcccccCcccccCcEEEeCCCccccCCccccccccccCC--CCeeecCCCCCccC
Q psy10674         80 IPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCN--QSYIPVTESRPGQD  133 (138)
Q Consensus        80 ~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~l~~--~~f~~~~~~~~y~~  133 (138)
                      +++|++|+++|.+++++.|+++.||++||+|..|+++|..  ..|+..+ |+|||.
T Consensus         3 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~-g~~yC~   57 (114)
T 1j2o_A            3 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKL-GRKLCR   57 (114)
T ss_dssp             CBCBSSSCSCBCSSEEEECSSSEECTTTCCCSSSCSCCCCSSSCCCCBT-TBCCCH
T ss_pred             CCCCcCCCCeeCCcEEEEECchhHHHhcCcccccCCchhcCCCeeEEEC-Ceeech
Confidence            4799999999998777889999999999999999999984  6899998 999994

>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.50  E-value=5.1e-15  Score=88.32  Aligned_cols=52  Identities=17%  Similarity=0.397  Sum_probs=47.5

Q ss_pred             CCcccccCcccccCcEEEeCCCccccCCccccccccccCCCCeeecCCCCCccC
Q psy10674         80 IPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYIPVTESRPGQD  133 (138)
Q Consensus        80 ~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~~~~~y~~  133 (138)
                      +++|.+|+++|.+ +++.++++.||++||+|..|+++|.+..|++.+ |+|||.
T Consensus        15 ~~~C~~C~~~I~~-~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~-g~~yC~   66 (79)
T 1x62_A           15 LPMCDKCGTGIVG-VFVKLRDRHRHPECYVCTDCGTNLKQKGHFFVE-DQIYCE   66 (79)
T ss_dssp             CCCCSSSCCCCCS-SCEECSSCEECTTTTSCSSSCCCHHHHCCEESS-SCEECH
T ss_pred             CCccccCCCCccC-cEEEECcceeCcCcCeeCCCCCCCCCCCeEeEC-CEEECH
Confidence            4799999999987 467799999999999999999999988899998 999994

>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B

Probab=99.49  E-value=6.1e-15  Score=86.18  Aligned_cols=53  Identities=15%  Similarity=0.333  Sum_probs=47.8

Q ss_pred             CCcccccCcccccCcE-EEeCCCccccCCccccccccccCCCCeeecCCCCCccC
Q psy10674         80 IPRCHACDELIFVNEY-TLAENKTFHVKHFCCYECDKELCNQSYIPVTESRPGQD  133 (138)
Q Consensus        80 ~~~C~~C~~~I~~~~~-~~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~~~~~y~~  133 (138)
                      .++|++|+++|.+.+. +.+.++.||++||+|..|+++|.+..|+..+ |+|||.
T Consensus        11 ~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~-g~~yC~   64 (72)
T 3f6q_B           11 SATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFE-GRKYCE   64 (72)
T ss_dssp             TCBCTTTCCBCCTTCEEEEETTEEEETTTSSCTTTCCCCGGGCCEEET-TEEECH
T ss_pred             CccchhcCccccCCceEEEeCcCeeCcCCCcccCCCCCCCCCCeEeEC-CeEeCH
Confidence            5799999999987664 5599999999999999999999987899998 999995

>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.48  E-value=1.2e-14  Score=86.10  Aligned_cols=53  Identities=13%  Similarity=0.335  Sum_probs=47.6

Q ss_pred             CCcccccCccccc-CcEEEeCCCccccCCccccccccccCCCCeeecCCCCCccC
Q psy10674         80 IPRCHACDELIFV-NEYTLAENKTFHVKHFCCYECDKELCNQSYIPVTESRPGQD  133 (138)
Q Consensus        80 ~~~C~~C~~~I~~-~~~~~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~~~~~y~~  133 (138)
                      .++|++|+++|.+ +.++.+.|+.||++||+|..|+++|.+..|+..+ |+|||.
T Consensus        11 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~-g~~yC~   64 (77)
T 1g47_A           11 SATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFE-GRKYCE   64 (77)
T ss_dssp             CCBCSSSCCBCCSTTTCEEETTEEECTTTCCCTTTCCCCGGGCSEEET-TEEECH
T ss_pred             CCCchhcCCccCCCceEEEeCccEeccccCeECCCCCCCCCCCeEeEC-CeEeCH
Confidence            4799999999985 4466699999999999999999999988899998 999995

>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}

Probab=99.48  E-value=3.9e-14  Score=83.91  Aligned_cols=58  Identities=21%  Similarity=0.456  Sum_probs=49.3

Q ss_pred             CcccccccccccC---C-CeEEEeccccCCCCCCcccCcccccCCccccCCceeeeCCeeecHHHHHh
Q psy10674         13 HFCCYECDKKVQF---E-NYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYAT   76 (138)
Q Consensus        13 ~~~C~~C~~~i~~---~-~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~   76 (138)
                      ..+|..|+++|.+   . +.+..      ++..||++||+|..|+++|.+..|+.+++++||+.||.+
T Consensus        15 ~~~C~~C~~~I~~~g~~~~~~~a------~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~yC~~cy~~   76 (77)
T 2egq_A           15 AKKCAGCKNPITGFGKGSSVVAY------EGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPDCAKK   76 (77)
T ss_dssp             CCCCSSSCCCCCCCSSCCCEEEE------TTEEEETTTCBCSSSCCBCTTSCCCEETTEECCHHHHHH
T ss_pred             CccCcccCCcccCCCCCceeEEE------CcceeCcccCEehhcCCCCCCCccEeECCEEEChHHhcc
Confidence            3679999999995   2 44443      466999999999999999988889999999999999975

>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.47  E-value=1.6e-14  Score=86.14  Aligned_cols=51  Identities=24%  Similarity=0.430  Sum_probs=44.9

Q ss_pred             CCcccccCcccccCcEEEeCCCccccCCccccccccccCCCCeeecCCCCCccC
Q psy10674         80 IPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYIPVTESRPGQD  133 (138)
Q Consensus        80 ~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~~~~~y~~  133 (138)
                      +++|++|+++|. ++++.++++.||++||+|..|+++|.+..| +.+ |+|||.
T Consensus        15 ~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~f-~~~-g~~yC~   65 (79)
T 2cor_A           15 KYICQKCHAIID-EQPLIFKNDPYHPDHFNCANCGKELTADAR-ELK-GELYCL   65 (79)
T ss_dssp             CCBCTTTCCBCC-SCCCCCSSSCCCTTTSBCSSSCCBCCTTCE-EET-TEEECH
T ss_pred             CCCCccCCCEec-ceEEEECcceeCCCCCEeCCCCCccCCCCE-eEC-CEEeCH
Confidence            579999999998 456679999999999999999999997755 777 999994

>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3

Probab=99.46  E-value=2.4e-14  Score=87.22  Aligned_cols=52  Identities=25%  Similarity=0.450  Sum_probs=47.4

Q ss_pred             CCcccccCcccccCcEEEeCCCccccCCccccccccccCCCCeeecCCCCCccC
Q psy10674         80 IPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYIPVTESRPGQD  133 (138)
Q Consensus        80 ~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~~~~~y~~  133 (138)
                      +++|.+|+++|.+ .++.++++.||++||+|..|+++|.+..|++.+ |+|||.
T Consensus        25 ~~~C~~C~~~I~~-~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~-g~~yC~   76 (89)
T 1x64_A           25 MPLCDKCGSGIVG-AVVKARDKYRHPECFVCADCNLNLKQKGYFFVE-GELYCE   76 (89)
T ss_dssp             CCBCTTTCCBCCS-CCEESSSCEECTTTCCCSSSCCCTTTSCCEEET-TEEECH
T ss_pred             CCCcccCCCEecc-cEEEECCceECccCCEecCCCCCCCCCCeEeEC-CEEECH
Confidence            4799999999986 567799999999999999999999988899998 999994

>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.46  E-value=3.4e-14  Score=83.51  Aligned_cols=59  Identities=15%  Similarity=0.362  Sum_probs=50.5

Q ss_pred             CcccccccccccCCCeEEEeccccCCCCCCcccCcccccCCcccc-CCceeeeCCeeecHHHHHhhc
Q psy10674         13 HFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLV-DLMYFHYKGNVYCLRDYATML   78 (138)
Q Consensus        13 ~~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~-~~~~~~~~~~~yC~~c~~~~~   78 (138)
                      ..+|..|+++|.+ +++..      ++..||++||+|..|+++|. +..|+..++++||..||.+++
T Consensus         5 ~~~C~~C~~~I~~-~~v~a------~~~~wH~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~   64 (73)
T 1wig_A            5 SSGCDSCEKYITG-RVLEA------GEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAAR   64 (73)
T ss_dssp             CCSCSSSCCCCSS-CCBCC------SSCCBCTTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHTS
T ss_pred             cCCcccCCCEecC-eeEEe------CCCCCCCCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHhh
Confidence            3579999999984 55433      57799999999999999997 678899999999999998876

>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}

Probab=99.46  E-value=3.8e-14  Score=91.34  Aligned_cols=61  Identities=23%  Similarity=0.539  Sum_probs=51.6

Q ss_pred             CcccccccccccCCCeEEEeccccCCCCCCcccCcccccCCcccc--CCceeeeCCeeecHHHHHhhcC
Q psy10674         13 HFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLV--DLMYFHYKGNVYCLRDYATMLD   79 (138)
Q Consensus        13 ~~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~--~~~~~~~~~~~yC~~c~~~~~~   79 (138)
                      ..+|..|+++|.+...+..      +++.||++||+|..|+++|.  +..|+.+++++||+.||.++||
T Consensus        61 ~~~C~~C~~~I~~~~~v~a------~~~~wH~~CF~C~~C~~~L~~~g~~f~~~dg~~yC~~cy~~~Fg  123 (123)
T 2l4z_A           61 WKRCAGCGGKIADRFLLYA------MDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG  123 (123)
T ss_dssp             CSBBSSSSSBCCSSSEEEE------TTEEEETTTSBCTTTCCBGGGTTCCCBCSSSCCBCHHHHHHHCC
T ss_pred             CCcCcCCCCCcCCcEEEEe------CCcEEcccccCcCcCCCcccccCCceEEECCEEeCHHHhhhhcC
Confidence            3589999999995544544      46699999999999999996  4679999999999999999874

>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}

Probab=99.46  E-value=6.8e-14  Score=80.37  Aligned_cols=58  Identities=26%  Similarity=0.706  Sum_probs=49.6

Q ss_pred             cccccccccccCC-CeEEEeccccCCCCCCc--ccCcccccCCccccCCceeeeCCeeec-HHHHHhh
Q psy10674         14 FCCYECDKKVQFE-NYTGKITQSQESEVLWH--PQCFVCSTCDELLVDLMYFHYKGNVYC-LRDYATM   77 (138)
Q Consensus        14 ~~C~~C~~~i~~~-~~~~~~~~~~~~~~~~H--~~Cf~C~~C~~~l~~~~~~~~~~~~yC-~~c~~~~   77 (138)
                      .+|..|+++|.++ +.+..      ++..||  ++||+|..|+++|.+..|+.+++++|| .+||.++
T Consensus         3 ~~C~~C~~~I~~~~~~v~a------~~~~wH~~~~CF~C~~C~~~L~~~~f~~~~g~~yC~~~C~~k~   64 (65)
T 2iyb_E            3 VVCQGCHNAIDPEVQRVTY------NNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRM   64 (65)
T ss_dssp             EECTTTSSEECTTSCEEEE------TTEEEETTTTTSBCTTTCCBCTTSCCEEETTEEESSHHHHHTT
T ss_pred             CCCcCCCCeeccCceEEEE------CCCccCCCCCCEECCCCCCcCCCCceEEECCEEecCHHHhhhh
Confidence            4799999999974 45444      466999  999999999999988889999999999 8998764

>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3

Probab=99.45  E-value=4.4e-14  Score=87.86  Aligned_cols=53  Identities=19%  Similarity=0.379  Sum_probs=48.6

Q ss_pred             CCcccccCccccc-CcEEEeCCCccccCCccccccccccCCCCeeecCCCCCccC
Q psy10674         80 IPRCHACDELIFV-NEYTLAENKTFHVKHFCCYECDKELCNQSYIPVTESRPGQD  133 (138)
Q Consensus        80 ~~~C~~C~~~I~~-~~~~~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~~~~~y~~  133 (138)
                      +++|++|+++|.. +.++.++|+.||++||+|..|+++|.+..|++.+ |+|||.
T Consensus         5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~-g~~yC~   58 (101)
T 2cup_A            5 SSGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKD-NKILCN   58 (101)
T ss_dssp             CCBCSSSCCBCCSSSCEEEETTEEEETTTCCCSSSCCCTTSSCCEEET-TEEECH
T ss_pred             CCcCcccCCcccCCceEEEECccChhhcCCcccccCCCCCcCeeECcC-CEEECh
Confidence            4799999999974 6778899999999999999999999998999998 999995

>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.44  E-value=2.6e-14  Score=85.86  Aligned_cols=62  Identities=23%  Similarity=0.416  Sum_probs=52.6

Q ss_pred             CCcccccccccccCCCeEEEeccccCCCCCCcccCcccccCCccccCCcee--eeCCeeecHHHHHhhcC
Q psy10674         12 KHFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYF--HYKGNVYCLRDYATMLD   79 (138)
Q Consensus        12 ~~~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~--~~~~~~yC~~c~~~~~~   79 (138)
                      ...+|..|+++|.+.+.+..      +++.||++||+|..|+++|....|+  ++++++||+.||.+++.
T Consensus        14 ~~~~C~~C~~~I~~~e~v~a------~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~   77 (82)
T 2co8_A           14 AGDLCALCGEHLYVLERLCV------NGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQTDS   77 (82)
T ss_dssp             SSCBCSSSCCBCCTTTBCCB------TTBCCBTTTCBCSSSCCBCCTTSEECCTTTCCCEETTTCCCCCC
T ss_pred             CCCCCcccCCCcccceEEEE------CCCeeCCCcCEEcCCCCCcCCCceeEeCcCCEEEChHHHHhhhc
Confidence            34689999999987776643      4669999999999999999888777  47999999999988874

>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3

Probab=99.42  E-value=2.5e-14  Score=92.06  Aligned_cols=53  Identities=19%  Similarity=0.256  Sum_probs=48.2

Q ss_pred             CCcccccCcccccCcEEEeCCCccccCCccccccccccC--CCCeeecCCCCCccC
Q psy10674         80 IPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELC--NQSYIPVTESRPGQD  133 (138)
Q Consensus        80 ~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~l~--~~~f~~~~~~~~y~~  133 (138)
                      +++|++|+++|.++.++.|+++.||++||+|..|+++|.  +..|+..+ |+|||.
T Consensus         5 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~-g~~yC~   59 (122)
T 1m3v_A            5 WKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKS-GMILCR   59 (122)
T ss_dssp             CCCBSSSSSCCCSSCCEEETTEEECHHHHCCSSSCCCTTTSEECCEEET-TEEECH
T ss_pred             CCCCcccCCEeCCcEEEEECCceeHhhCCCcCCCCCcccccCCeEEEEC-CeeecH
Confidence            579999999999887677999999999999999999997  57899998 999994

>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.41  E-value=1.6e-13  Score=82.10  Aligned_cols=64  Identities=19%  Similarity=0.470  Sum_probs=52.3

Q ss_pred             CcccccccccccCCCeEEEeccccCCCCCCcccCcccccCCcccc-CCcee-eeCCeeecHHHHHhhcCCCccc
Q psy10674         13 HFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLV-DLMYF-HYKGNVYCLRDYATMLDIPRCH   84 (138)
Q Consensus        13 ~~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~-~~~~~-~~~~~~yC~~c~~~~~~~~~C~   84 (138)
                      ..+|..|+++|. ++.+..      ++..||++||+|..|+++|. +..|. ++++++||+.||.++++ +.+.
T Consensus        15 ~~~C~~C~~~I~-~~~~~a------~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~~-~~~s   80 (81)
T 1x6a_A           15 GEFCHGCSLLMT-GPFMVA------GEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVS-GPSS   80 (81)
T ss_dssp             SCBCTTTCCBCC-SCCBCC------TTCCBCTTSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHHC-TTSC
T ss_pred             CCcCccCCCCcC-ceEEEE------CCceeccccCCccCCCCccCCCCcEEEeeCCEEECHHHHHHHhc-CCCC
Confidence            357999999999 555433      56799999999999999995 45676 58999999999999995 5654

>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.23  E-value=5.5e-12  Score=75.28  Aligned_cols=59  Identities=19%  Similarity=0.420  Sum_probs=47.1

Q ss_pred             cccccccccccCCCeEEEeccccCCCCCCcccCcccccCCccccCCceee-eCCeeecHHHHHhhcC
Q psy10674         14 FCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFH-YKGNVYCLRDYATMLD   79 (138)
Q Consensus        14 ~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~-~~~~~yC~~c~~~~~~   79 (138)
                      .+|..|+++|. ++.+..      ++..||++||+|..|+++|....++. .++.+||..||.++++
T Consensus        16 ~~C~~C~~~I~-~~~v~a------~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~~~~C~~C~~~~~~   75 (81)
T 1v6g_A           16 TRCFSCDQFIE-GEVVSA------LGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCSLPVSV   75 (81)
T ss_dssp             CBCTTTCCBCC-SCCEEE------TTEEECTTTSSCSSSCCCCCSSSCEEEETTEEEEHHHHSCCSS
T ss_pred             CcCccccCEec-cceEEE------CCceeCccCCccccCCCCCCCCCEEEeCCCCEEChhhhcccCC
Confidence            58999999999 555544      46699999999999999997655555 4556799999987764

>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4

Probab=98.20  E-value=3.5e-07  Score=44.36  Aligned_cols=28  Identities=25%  Similarity=0.632  Sum_probs=25.8

Q ss_pred             CcccccCcccccCcEEEeCCCccccCCc
Q psy10674         81 PRCHACDELIFVNEYTLAENKTFHVKHF  108 (138)
Q Consensus        81 ~~C~~C~~~I~~~~~~~~~~~~~H~~CF  108 (138)
                      ++|+.|++.+...+.+.+.|+.||..||
T Consensus         4 ~~C~~C~k~Vy~~Ek~~~~g~~~Hk~CF   31 (31)
T 1zfo_A            4 PNCARCGKIVYPTEKVNCLDKFWHKACF   31 (31)
T ss_dssp             CBCSSSCSBCCGGGCCCSSSSCCCGGGC
T ss_pred             CcCCccCCEEecceeEEECCeEecccCC
Confidence            6999999999988877799999999998

>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4

Probab=97.02  E-value=0.00011  Score=35.33  Aligned_cols=28  Identities=29%  Similarity=0.593  Sum_probs=22.4

Q ss_pred             cccccccccccCCCeEEEeccccCCCCCCcccCc
Q psy10674         14 FCCYECDKKVQFENYTGKITQSQESEVLWHPQCF   47 (138)
Q Consensus        14 ~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf   47 (138)
                      .+|..|++.+.+.+.+..      .+..||..||
T Consensus         4 ~~C~~C~k~Vy~~Ek~~~------~g~~~Hk~CF   31 (31)
T 1zfo_A            4 PNCARCGKIVYPTEKVNC------LDKFWHKACF   31 (31)
T ss_dssp             CBCSSSCSBCCGGGCCCS------SSSCCCGGGC
T ss_pred             CcCCccCCEEecceeEEE------CCeEecccCC
Confidence            579999999987766554      4669999997

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=88.62  E-value=1.1  Score=25.11  Aligned_cols=51  Identities=24%  Similarity=0.343  Sum_probs=37.4

Q ss_pred             cCcccccCCccccCCceeeeCCeeecHHHHHhhcC--CCcccccCcccccCcEE
Q psy10674         45 QCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLD--IPRCHACDELIFVNEYT   96 (138)
Q Consensus        45 ~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~--~~~C~~C~~~I~~~~~~   96 (138)
                      +-|.|..|...+.+ .....-|..||..|..+.+.  ...|+.|+.++....++
T Consensus         7 ~~~~C~IC~~~~~~-Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~   59 (78)
T 1t1h_A            7 EYFRCPISLELMKD-PVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLT   59 (78)
T ss_dssp             SSSSCTTTSCCCSS-EEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCE
T ss_pred             ccCCCCCccccccC-CEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCc
Confidence            34788999888754 34557889999999876652  35799999998655443

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=88.18  E-value=0.56  Score=28.42  Aligned_cols=55  Identities=15%  Similarity=0.217  Sum_probs=35.4

Q ss_pred             ccccCCccccCCceeeeCCeeecHHHHHhh--cCCCcccccCcccccCcEEEeCCCcc
Q psy10674         48 VCSTCDELLVDLMYFHYKGNVYCLRDYATM--LDIPRCHACDELIFVNEYTLAENKTF  103 (138)
Q Consensus        48 ~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~--~~~~~C~~C~~~I~~~~~~~~~~~~~  103 (138)
                      -|..|+.|+..-.-...=.-++|.+|+...  .+...|..|..+|..-+.. .+|..|
T Consensus         3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe~~-~~~~if   59 (101)
T 3vk6_A            3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQC-TRGSLF   59 (101)
T ss_dssp             BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEEEE-EGGGCC
T ss_pred             ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeEEe-ccCCEE
Confidence            377788887432222334458999999652  2246899999999754443 456654

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=87.78  E-value=0.72  Score=25.47  Aligned_cols=47  Identities=19%  Similarity=0.436  Sum_probs=33.2

Q ss_pred             CcccccCCccccCCceeeeCCeeecHHHHHhhcC----CCcccccCcccccC
Q psy10674         46 CFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLD----IPRCHACDELIFVN   93 (138)
Q Consensus        46 Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~----~~~C~~C~~~I~~~   93 (138)
                      -+.|.+|...+.. .....=|..||..|..+.+.    ...|+.|..+|...
T Consensus        20 ~~~C~IC~~~~~~-~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~   70 (73)
T 2ysl_A           20 EVICPICLDILQK-PVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN   70 (73)
T ss_dssp             CCBCTTTCSBCSS-EEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred             CCEeccCCcccCC-eEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence            3678888887754 33346677899999887652    23799998888543

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=87.16  E-value=0.5  Score=25.74  Aligned_cols=48  Identities=27%  Similarity=0.578  Sum_probs=33.2

Q ss_pred             CcccccCCccccCCceeeeCCeeecHHHHHhhc--CCCcccccCcccccCc
Q psy10674         46 CFVCSTCDELLVDLMYFHYKGNVYCLRDYATML--DIPRCHACDELIFVNE   94 (138)
Q Consensus        46 Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~--~~~~C~~C~~~I~~~~   94 (138)
                      =+.|..|...+... ....=|..||..|..+.+  +...|+.|..+|...+
T Consensus        15 ~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~   64 (66)
T 2ecy_A           15 KYKCEKCHLVLCSP-KQTECGHRFCESCMAALLSSSSPKCTACQESIVKDK   64 (66)
T ss_dssp             CEECTTTCCEESSC-CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTT
T ss_pred             CCCCCCCChHhcCe-eECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhh
Confidence            36788887777542 334567789999987665  2357999999886543

>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}

Probab=85.76  E-value=0.57  Score=28.68  Aligned_cols=76  Identities=14%  Similarity=0.185  Sum_probs=42.4

Q ss_pred             cccccccccccCCCeEEEeccccCCCCCCcccCcccccCCccccCCceeeeCCeeecHHHHHhhcCCCcccccCcccccC
Q psy10674         14 FCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELIFVN   93 (138)
Q Consensus        14 ~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~~C~~C~~~I~~~   93 (138)
                      ..|..|+..-...+++.-..    =++.||+.|..=..  .+       ...+..+|..|       ..|..|++.-.+.
T Consensus         8 ~~C~~C~~~g~~~~ll~C~~----C~~~~H~~Cl~~~~--~~-------~~~~~W~C~~C-------~~C~~C~~~~~~~   67 (111)
T 2ysm_A            8 ANCAVCDSPGDLLDQFFCTT----CGQHYHGMCLDIAV--TP-------LKRAGWQCPEC-------KVCQNCKQSGEDS   67 (111)
T ss_dssp             SCBTTTCCCCCTTTSEECSS----SCCEECTTTTTCCC--CT-------TTSTTCCCTTT-------CCCTTTCCCSCCT
T ss_pred             CCCcCCCCCCCCcCCeECCC----CCCCcChHHhCCcc--cc-------ccccCccCCcC-------CcccccCccCCCC
Confidence            45777766432223333321    24578888764211  11       12345667665       2688888876555


Q ss_pred             cEEE--eCCCccccCCcc
Q psy10674         94 EYTL--AENKTFHVKHFC  109 (138)
Q Consensus        94 ~~~~--~~~~~~H~~CF~  109 (138)
                      .++.  .=++.||..|..
T Consensus        68 ~ll~Cd~C~~~yH~~Cl~   85 (111)
T 2ysm_A           68 KMLVCDTCDKGYHTFCLQ   85 (111)
T ss_dssp             TEEECSSSCCEEEGGGSS
T ss_pred             CeeECCCCCcHHhHHhcC
Confidence            5555  346778888765

>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1

Probab=82.94  E-value=1.4  Score=26.09  Aligned_cols=26  Identities=19%  Similarity=0.300  Sum_probs=18.6

Q ss_pred             CeeecHHHHH--hhcCCCcccccCcccc
Q psy10674         66 GNVYCLRDYA--TMLDIPRCHACDELIF   91 (138)
Q Consensus        66 ~~~yC~~c~~--~~~~~~~C~~C~~~I~   91 (138)
                      +.++|+.||.  +.-|...|++|+.+-.
T Consensus        42 ~FPvCrpCyEYErkeG~q~CpqCktrYk   69 (93)
T 1weo_A           42 GFPACRPCYEYERREGTQNCPQCKTRYK   69 (93)
T ss_dssp             CCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred             CChhhHHHHHHHHhccCccccccCCccc
Confidence            4567999884  3445678999987663

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=82.80  E-value=1.9  Score=23.18  Aligned_cols=50  Identities=12%  Similarity=0.313  Sum_probs=32.1

Q ss_pred             cccccCCc-cccCCc---eeeeCCeeecHHHHHhhc--CCCcccccCcccccCcEE
Q psy10674         47 FVCSTCDE-LLVDLM---YFHYKGNVYCLRDYATML--DIPRCHACDELIFVNEYT   96 (138)
Q Consensus        47 f~C~~C~~-~l~~~~---~~~~~~~~yC~~c~~~~~--~~~~C~~C~~~I~~~~~~   96 (138)
                      +.|.+|.. .+.+..   ....=|-.+|..|..+.+  +...|+.|++++....+.
T Consensus         4 ~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~   59 (65)
T 1g25_A            4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFR   59 (65)
T ss_dssp             TCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCE
T ss_pred             CcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccce
Confidence            46777776 443321   223456778988886652  235799999999766554

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=82.11  E-value=1.6  Score=24.12  Aligned_cols=50  Identities=18%  Similarity=0.403  Sum_probs=33.4

Q ss_pred             CcccccCCccccCCceeeeCCeeecHHHHHhhcC-CCcccccCcccccCcE
Q psy10674         46 CFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLD-IPRCHACDELIFVNEY   95 (138)
Q Consensus        46 Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~-~~~C~~C~~~I~~~~~   95 (138)
                      -+.|.+|...+........=+..||..|..+.+. ...|+.|..+|...+.
T Consensus        15 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~   65 (72)
T 2djb_A           15 YILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQP   65 (72)
T ss_dssp             GGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCS
T ss_pred             CCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcccc
Confidence            3678888777755322225677899988865431 2589999998865543

>1jjd_A Metallothionein, SMTA; zinc finger, zinc cluster, metal binding PR; NMR {Synechococcus elongatus} SCOP: g.46.1.1

Probab=81.53  E-value=0.81  Score=24.57  Aligned_cols=23  Identities=13%  Similarity=0.013  Sum_probs=12.8

Q ss_pred             ccccccccCCCCeeecCCCCCccC
Q psy10674        110 CYECDKELCNQSYIPVTESRPGQD  133 (138)
Q Consensus       110 C~~C~~~l~~~~f~~~~~~~~y~~  133 (138)
                      |..|...++...-++.+ ||.||+
T Consensus        10 C~~C~c~Vs~~eai~~d-GK~YCS   32 (55)
T 1jjd_A           10 CEPCLCNVDPSKAIDRN-GLYYCS   32 (55)
T ss_dssp             STTCCCCBCTTTSEESS-SCEESS
T ss_pred             CCCCeeEechHHhhhcC-CeEEeh
Confidence            45555555544445555 666664

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=80.29  E-value=4  Score=24.33  Aligned_cols=53  Identities=15%  Similarity=0.049  Sum_probs=39.2

Q ss_pred             cccCcccccCCccccCCceeeeCCeeecHHHHHhhc-CCCcccccCcccccCcEE
Q psy10674         43 HPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATML-DIPRCHACDELIFVNEYT   96 (138)
Q Consensus        43 H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~-~~~~C~~C~~~I~~~~~~   96 (138)
                      -++-|.|..|...+.+ +.....|..||..+-.+.+ +...|+.|+.++....++
T Consensus        26 ~p~~~~CpI~~~~m~d-PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~   79 (100)
T 2kre_A           26 APDEFRDPLMDTLMTD-PVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLE   79 (100)
T ss_dssp             CSTTTBCTTTCSBCSS-EEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSE
T ss_pred             CcHhhCCcCccCcccC-CeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhhce
Confidence            3667999999888865 4555689999998876544 135899999988655443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	138
d1x3ha1	35	Leupaxin {Human (Homo sapiens) [TaxId: 9606]}	99.25
d1g47a2	35	Pinch (particularly interesting new Cys-His) prote	99.01
d2cuqa2	35	Four and a half LIM domains 3, FHL3 {Human (Homo s	98.96
d2dloa1	35	Thyroid receptor interacting protein 6, TRIP6 {Hum	98.88
d2dara2	45	PDZ and LIM domain protein 5, Enigma {Human (Homo	98.8
d1x63a1	37	Four and a half LIM domains protein 1, FHL-1 {Huma	98.74
d1u5sb1	31	Pinch (particularly interesting new Cys-His) prote	98.66
d1v6ga1	41	Actin-binding LIM protein 2, abLIM2 {Human (Homo s	98.65
d1x3ha2	32	Leupaxin {Human (Homo sapiens) [TaxId: 9606]}	98.58
d2d8xa2	26	Pinch (particularly interesting new Cys-His) prote	98.53
d1b8ta4	49	Cysteine-rich (intestinal) protein, CRP, CRIP {Chi	98.52
d2d8za1	26	Four and a half LIM domains protein 2, FHL2 {Human	98.49
d1u5sb2	35	Pinch (particularly interesting new Cys-His) prote	98.48
d2d8za2	32	Four and a half LIM domains protein 2, FHL2 {Human	98.46
d1rutx3	31	LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10	98.44
d2cura2	26	Four and a half LIM domains protein 1, FHL-1 {Huma	98.39
d2dj7a2	36	Actin-binding LIM protein 3, abLIM-3 {Human (Homo	98.37
d2dj7a1	31	Actin-binding LIM protein 3, abLIM-3 {Human (Homo	98.35
d1g47a2	35	Pinch (particularly interesting new Cys-His) prote	98.33
d1x4la1	29	Four and a half LIM domains protein 2, FHL2 {Human	98.3
d1rutx1	30	LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10	98.3
d1j2oa1	30	Rhombotin-2 (Lmo2) {Mouse (Mus musculus) [TaxId: 1	98.27
d2cu8a2	33	Cysteine-rich (intestinal) protein, CRP, CRIP {Hum	98.26
d2cuqa1	32	Four and a half LIM domains 3, FHL3 {Human (Homo s	98.24
d1x3ha1	35	Leupaxin {Human (Homo sapiens) [TaxId: 9606]}	98.24
d2d8za2	32	Four and a half LIM domains protein 2, FHL2 {Human	98.22
d1ibia2	31	Cysteine-rich (intestinal) protein, CRP, CRIP {Jap	98.21
d1imla2	48	Cysteine-rich (intestinal) protein, CRP, CRIP {Rat	98.2
d1x68a1	29	Four and a half LIM domains protein 5, FHL-5 {Huma	98.18
d2d8ya2	42	Eplin, LIMA1 {Human (Homo sapiens) [TaxId: 9606]}	98.15
d2dara1	32	PDZ and LIM domain protein 5, Enigma {Human (Homo	98.13
d2d8ya1	35	Eplin, LIMA1 {Human (Homo sapiens) [TaxId: 9606]}	98.12
d1b8ta3	43	Cysteine-rich (intestinal) protein, CRP, CRIP {Chi	98.11
d1x6aa1	34	Lim domain kinase 2 {Human (Homo sapiens) [TaxId:	98.09
d2dara2	45	PDZ and LIM domain protein 5, Enigma {Human (Homo	98.06
d1x3ha2	32	Leupaxin {Human (Homo sapiens) [TaxId: 9606]}	98.06
d2cu8a2	33	Cysteine-rich (intestinal) protein, CRP, CRIP {Hum	98.06
d2cu8a1	30	Cysteine-rich (intestinal) protein, CRP, CRIP {Hum	98.03
d2co8a2	36	Nedd9 interacting protein with calponin homology,	98.01
d1x4ka1	32	Four and a half LIM domains protein 2, FHL2 {Human	97.99
d1x4ka2	27	Four and a half LIM domains protein 2, FHL2 {Human	97.98
d1b8ta2	65	Cysteine-rich (intestinal) protein, CRP, CRIP {Chi	97.96
d1x62a2	35	PDZ and LIM domain protein 1 Elfin {Human (Homo sa	97.95
d1wyha1	32	Four and a half LIM domains 3, FHL3 {Human (Homo s	97.94
d1wyha2	27	Four and a half LIM domains 3, FHL3 {Human (Homo s	97.93
d1zfoa_	30	LASP-1 {Pig (Sus scrofa) [TaxId: 9823]}	97.92
d1x61a2	32	Thyroid receptor interacting protein 6, TRIP6 {Hum	97.9
d2cuqa1	32	Four and a half LIM domains 3, FHL3 {Human (Homo s	97.87
d2d8za1	26	Four and a half LIM domains protein 2, FHL2 {Human	97.86
d2cura1	31	Four and a half LIM domains protein 1, FHL-1 {Huma	97.86
d1x64a1	45	PDZ and LIM domain protein 3, PDLIM3 {Mouse (Mus m	97.85
d2cura2	26	Four and a half LIM domains protein 1, FHL-1 {Huma	97.82
d1rutx3	31	LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10	97.75
d1j2oa1	30	Rhombotin-2 (Lmo2) {Mouse (Mus musculus) [TaxId: 1	97.72
d1rutx1	30	LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10	97.71
d2cuqa2	35	Four and a half LIM domains 3, FHL3 {Human (Homo s	97.69
d1imla2	48	Cysteine-rich (intestinal) protein, CRP, CRIP {Rat	97.68
d1x63a1	37	Four and a half LIM domains protein 1, FHL-1 {Huma	97.59
d1x64a2	31	PDZ and LIM domain protein 3, PDLIM3 {Mouse (Mus m	97.58
d1a7ia2	32	Cysteine-rich (intestinal) protein, CRP, CRIP {Jap	97.54
d2dj7a2	36	Actin-binding LIM protein 3, abLIM-3 {Human (Homo	97.52
d1ibia1	28	Cysteine-rich (intestinal) protein, CRP, CRIP {Jap	97.51
d2dj7a1	31	Actin-binding LIM protein 3, abLIM-3 {Human (Homo	97.5
d2dloa2	33	Thyroid receptor interacting protein 6, TRIP6 {Hum	97.43
d2d8xa2	26	Pinch (particularly interesting new Cys-His) prote	97.4
d2dloa2	33	Thyroid receptor interacting protein 6, TRIP6 {Hum	97.35
d1u5sb2	35	Pinch (particularly interesting new Cys-His) prote	97.33
d2cura1	31	Four and a half LIM domains protein 1, FHL-1 {Huma	97.32
d2cupa3	27	Four and a half LIM domains protein 1, FHL-1 {Huma	97.24
d1zfoa_	30	LASP-1 {Pig (Sus scrofa) [TaxId: 9823]}	97.24
d1wiga1	32	Actin-binding LIM protein 2, abLIM2 {Human (Homo s	97.22
d1x62a1	31	PDZ and LIM domain protein 1 Elfin {Human (Homo sa	97.2
d2cupa3	27	Four and a half LIM domains protein 1, FHL-1 {Huma	97.2
d1u5sb1	31	Pinch (particularly interesting new Cys-His) prote	97.2
d1x63a2	32	Four and a half LIM domains protein 1, FHL-1 {Huma	97.17
d2dloa1	35	Thyroid receptor interacting protein 6, TRIP6 {Hum	97.12
d2cora2	35	Pinch (particularly interesting new Cys-His) prote	97.06
d2cu8a1	30	Cysteine-rich (intestinal) protein, CRP, CRIP {Hum	97.06
d1rutx2	34	LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10	97.05
d1a7ia1	28	Cysteine-rich (intestinal) protein, CRP, CRIP {Jap	97.05
d1x4la1	29	Four and a half LIM domains protein 2, FHL2 {Human	97.04
d1ibia2	31	Cysteine-rich (intestinal) protein, CRP, CRIP {Jap	96.99
d1b8ta1	35	Cysteine-rich (intestinal) protein, CRP, CRIP {Chi	96.96
d2d8ya2	42	Eplin, LIMA1 {Human (Homo sapiens) [TaxId: 9606]}	96.88
d1b8ta3	43	Cysteine-rich (intestinal) protein, CRP, CRIP {Chi	96.85
d1x4ka2	27	Four and a half LIM domains protein 2, FHL2 {Human	96.79
d2d8ya1	35	Eplin, LIMA1 {Human (Homo sapiens) [TaxId: 9606]}	96.73
d2dara1	32	PDZ and LIM domain protein 5, Enigma {Human (Homo	96.71
d1x68a1	29	Four and a half LIM domains protein 5, FHL-5 {Huma	96.69
d1wyha2	27	Four and a half LIM domains 3, FHL3 {Human (Homo s	96.61
d1b8ta4	49	Cysteine-rich (intestinal) protein, CRP, CRIP {Chi	96.55
d2co8a2	36	Nedd9 interacting protein with calponin homology,	96.53
d1x6aa2	34	Lim domain kinase 2 {Human (Homo sapiens) [TaxId:	96.36
d1x62a2	35	PDZ and LIM domain protein 1 Elfin {Human (Homo sa	96.15
d2cupa2	31	Four and a half LIM domains protein 1, FHL-1 {Huma	96.08
d1x61a1	27	Thyroid receptor interacting protein 6, TRIP6 {Hum	95.96
d2cupa2	31	Four and a half LIM domains protein 1, FHL-1 {Huma	95.9
d1x61a2	32	Thyroid receptor interacting protein 6, TRIP6 {Hum	95.84
d1x64a1	45	PDZ and LIM domain protein 3, PDLIM3 {Mouse (Mus m	95.8
d1x6aa2	34	Lim domain kinase 2 {Human (Homo sapiens) [TaxId:	95.79
d2cora1	31	Pinch (particularly interesting new Cys-His) prote	95.77
d1wyha1	32	Four and a half LIM domains 3, FHL3 {Human (Homo s	95.72
d2d8xa1	32	Pinch (particularly interesting new Cys-His) prote	95.71
d1x4ka1	32	Four and a half LIM domains protein 2, FHL2 {Human	95.59
d1rutx4	33	LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10	95.58
d1v6ga1	41	Actin-binding LIM protein 2, abLIM2 {Human (Homo s	95.41
d1ibia1	28	Cysteine-rich (intestinal) protein, CRP, CRIP {Jap	95.33
d1g47a1	35	Pinch (particularly interesting new Cys-His) prote	95.04
d1wiga2	41	Actin-binding LIM protein 2, abLIM2 {Human (Homo s	94.96
d1g47a1	35	Pinch (particularly interesting new Cys-His) prote	94.93
d1b8ta2	65	Cysteine-rich (intestinal) protein, CRP, CRIP {Chi	94.54
d1a7ia1	28	Cysteine-rich (intestinal) protein, CRP, CRIP {Jap	94.1
d1x64a2	31	PDZ and LIM domain protein 3, PDLIM3 {Mouse (Mus m	94.08
d1b8ta1	35	Cysteine-rich (intestinal) protein, CRP, CRIP {Chi	93.91
d1x4la2	30	Four and a half LIM domains protein 2, FHL2 {Human	93.81
d1x68a2	34	Four and a half LIM domains protein 5, FHL-5 {Huma	93.67
d1a7ia2	32	Cysteine-rich (intestinal) protein, CRP, CRIP {Jap	93.38
d1rutx4	33	LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10	92.93
d1x63a2	32	Four and a half LIM domains protein 1, FHL-1 {Huma	92.44
d1x68a2	34	Four and a half LIM domains protein 5, FHL-5 {Huma	92.16
d1j2oa2	33	Rhombotin-2 (Lmo2) {Mouse (Mus musculus) [TaxId: 1	91.24
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	91.17
d2d8xa1	32	Pinch (particularly interesting new Cys-His) prote	89.62
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	89.43
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	88.89
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	87.58
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	87.27
d1v6ga2	40	Actin-binding LIM protein 2, abLIM2 {Human (Homo s	86.93
d1weoa_	93	Cellulose synthase A catalytic subunit 7, IRX3 {Th	85.96
d2co8a1	33	Nedd9 interacting protein with calponin homology,	85.2
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	83.12
d1uw0a_	117	DNA ligase III {Human (Homo sapiens) [TaxId: 9606]	82.42
d2gvia2	33	Uncharacterized protein Ta1109 {Thermoplasma acido	80.83

>d1x3ha1 g.39.1.3 (A:8-42) Leupaxin {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Leupaxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=4e-13  Score=65.97  Aligned_cols=34  Identities=26%  Similarity=0.709  Sum_probs=29.7

Q ss_pred             HHHhhcCCCcccccCcccccCcEEEeCCCccccCCc
Q psy10674         73 DYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHF  108 (138)
Q Consensus        73 c~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF  108 (138)
                      +|.+++ +++|.+|+++|.+ .+|.|+|+.||++||
T Consensus         2 DY~~~f-apkC~~C~~~I~g-~~v~Al~~~wHpeCF   35 (35)
T d1x3ha1           2 DFLAMF-SPKCGGCNRPVLE-NYLSAMDTVWHPECF   35 (35)
T ss_dssp             CCCCCC-SCBCTTTCCBCCS-SCEEETTEEECTTTC
T ss_pred             cHHHHh-ChhhhhcCCcccc-hheeecCCccCcccC
Confidence            577888 5999999999965 577799999999998

>d1g47a2 g.39.1.3 (A:36-70) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Pinch (particularly interesting new Cys-His) protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=1.2e-10  Score=56.80  Aligned_cols=32  Identities=25%  Similarity=0.879  Sum_probs=30.9

Q ss_pred             cccccCCccccCCceeeeCCeeecHHHHHhhc
Q psy10674         47 FVCSTCDELLVDLMYFHYKGNVYCLRDYATML   78 (138)
Q Consensus        47 f~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~   78 (138)
                      |+|..|+++|.+..|++++|++||+.||.+++
T Consensus         1 F~C~~C~~~f~~~~F~e~~G~pYCe~~Y~~lF   32 (35)
T d1g47a2           1 FVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLF   32 (35)
T ss_dssp             CCCTTTCCCCGGGCSEEETTEEECHHHHHHHC
T ss_pred             CCCCCCcCCCCCCCeEEECCEecChHhHHhhc
Confidence            78999999999999999999999999999998

>d2cuqa2 g.39.1.3 (A:8-42) Four and a half LIM domains 3, FHL3 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains 3, FHL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=5.5e-11  Score=56.74  Aligned_cols=34  Identities=21%  Similarity=0.499  Sum_probs=30.6

Q ss_pred             HHHhhcCCCcccccCcccccCcEEEeCCCccccCCc
Q psy10674         73 DYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHF  108 (138)
Q Consensus        73 c~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF  108 (138)
                      ||++.| +++|..|+++|..+.+. ..++.||.+||
T Consensus         2 CyE~kf-a~~C~~Ckk~It~GGvt-Y~dqpWHkeCF   35 (35)
T d2cuqa2           2 CYENKF-APRCARCSKTLTQGGVT-YRDQPWHRECL   35 (35)
T ss_dssp             CCCCCS-SCCCTTTCCCCCSCCEE-SSSSEECTTTC
T ss_pred             chHHHH-HHHHhhcCCccccCcee-ecCCcchhhhC
Confidence            677888 69999999999988766 99999999998

>d2dloa1 g.39.1.3 (A:8-42) Thyroid receptor interacting protein 6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Thyroid receptor interacting protein 6, TRIP6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=7.4e-11  Score=56.54  Aligned_cols=33  Identities=27%  Similarity=0.519  Sum_probs=27.7

Q ss_pred             HHHhhcCCCcccccCcccccCcEEEeCCCccccCCc
Q psy10674         73 DYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHF  108 (138)
Q Consensus        73 c~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF  108 (138)
                      ||....  ++|..|+++|.+. ++.|.|+.|||.||
T Consensus         3 Cy~~tl--EkC~~C~~~I~dr-iLrA~Gk~yHP~CF   35 (35)
T d2dloa1           3 CYVATL--EKCATCSQPILDR-ILRAMGKAYHPGCF   35 (35)
T ss_dssp             CCCSSC--CBCTTTCCBCCSC-CEEETTEEECTTTC
T ss_pred             hHHHHH--HHHHHhchHHHHH-HHHHhCCCCCCCCC
Confidence            555544  7999999999775 67799999999998

>d2dara2 g.39.1.3 (A:8-52) PDZ and LIM domain protein 5, Enigma {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: PDZ and LIM domain protein 5, Enigma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=1e-09  Score=55.57  Aligned_cols=28  Identities=29%  Similarity=0.668  Sum_probs=24.7

Q ss_pred             CCcccccCcccccCcEEEeCCCccccCCc
Q psy10674         80 IPRCHACDELIFVNEYTLAENKTFHVKHF  108 (138)
Q Consensus        80 ~~~C~~C~~~I~~~~~~~~~~~~~H~~CF  108 (138)
                      .++|..|+++|.+ .++.|+|+.|||+||
T Consensus        18 ~P~C~~C~~pI~g-~~vtAlgk~WHPEhF   45 (45)
T d2dara2          18 TPMCAHCNQVIRG-PFLVALGKSWHPEEF   45 (45)
T ss_dssp             CCBBSSSCCBCCS-CEEEETTEEECTTTC
T ss_pred             CeeccccCCcccC-ceeeecCCccCcCCC
Confidence            4899999999965 466699999999998

>d1x63a1 g.39.1.3 (A:8-44) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 1, FHL-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=1.2e-09  Score=53.55  Aligned_cols=35  Identities=17%  Similarity=0.326  Sum_probs=29.8

Q ss_pred             HHHhhcCCCcccccCcccccCc-EEEeCCCccccCCc
Q psy10674         73 DYATMLDIPRCHACDELIFVNE-YTLAENKTFHVKHF  108 (138)
Q Consensus        73 c~~~~~~~~~C~~C~~~I~~~~-~~~~~~~~~H~~CF  108 (138)
                      ||.+.+ +++|.+|.++|.+++ .+.+.|+.||.+||
T Consensus         2 Cy~~~~-a~~C~~C~k~I~~G~k~veykg~~WHe~CF   37 (37)
T d1x63a1           2 CTTRED-SPKCKGCFKAIVAGDQNVEYKGTVWHKDCF   37 (37)
T ss_dssp             CCSCCC-SCBCSSSCCBCCSSSCEEECSSCEEETTTC
T ss_pred             cccccc-CcccccCCCccCCCCeEeEeCCccchhccC
Confidence            566777 589999999999765 56699999999998

>d1u5sb1 g.39.1.3 (B:72-102) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Pinch (particularly interesting new Cys-His) protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=3.2e-09  Score=49.15  Aligned_cols=28  Identities=36%  Similarity=0.566  Sum_probs=24.1

Q ss_pred             CCCcccccCcccccCcEEEeCCCccccCC
Q psy10674         79 DIPRCHACDELIFVNEYTLAENKTFHVKH  107 (138)
Q Consensus        79 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~C  107 (138)
                      ++++|+.|++||.+ .++.|+|+.||+++
T Consensus         4 g~p~C~~C~~PI~~-~~vtAlgk~WHpEH   31 (31)
T d1u5sb1           4 GVPICGACRRPIEG-RVVNAMGKQWHVEH   31 (31)
T ss_dssp             CCCEETTTTEECCS-CEECCTTSBEETTT
T ss_pred             CCcchhhcCCchhh-hHhhhhccccCCCC
Confidence            36899999999976 46669999999986

>d1v6ga1 g.39.1.3 (A:1-41) Actin-binding LIM protein 2, abLIM2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Actin-binding LIM protein 2, abLIM2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=4e-09  Score=52.37  Aligned_cols=34  Identities=35%  Similarity=0.639  Sum_probs=29.6

Q ss_pred             HHHHhhcCCCcccccCcccccCcEEEeCCCccccCC
Q psy10674         72 RDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKH  107 (138)
Q Consensus        72 ~c~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~C  107 (138)
                      .+|.++|| .+|..|++.|. ++++.|.++.|||+|
T Consensus         8 ~DYq~~fG-~~C~~C~~~It-G~V~~Ag~~~yHP~C   41 (41)
T d1v6ga1           8 LDYQRLYG-TRCFSCDQFIE-GEVVSALGKTYHPDC   41 (41)
T ss_dssp             SCGGGSCC-CBCTTTCCBCC-SCCEEETTEEECTTT
T ss_pred             ccHHHHhC-cccccccCEee-eeeeEecCcccCCCC
Confidence            36889998 69999999995 567779999999997

>d1x3ha2 g.39.1.3 (A:43-74) Leupaxin {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Leupaxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=2.3e-08  Score=47.00  Aligned_cols=31  Identities=23%  Similarity=0.519  Sum_probs=28.6

Q ss_pred             ccccCCccccCCceeeeCCeeecHHHHHhhc
Q psy10674         48 VCSTCDELLVDLMYFHYKGNVYCLRDYATML   78 (138)
Q Consensus        48 ~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~   78 (138)
                      +|..|.+|+.+..|++.+|+|||+.+|.++.
T Consensus         1 VC~~C~~PF~~~~Fy~~~g~PyCe~HyH~~~   31 (32)
T d1x3ha2           1 VCGDCFTSFSTGSFFELDGRPFCELHYHHRR   31 (32)
T ss_dssp             BCSSSCCBSCSSCCEESSSCEECHHHHHHHH
T ss_pred             CcCccCCcCCCCCeEeECCccchHHhhhhhc
Confidence            5889999999999999999999999998875

>d1b8ta4 g.39.1.3 (A:144-192) Cysteine-rich (intestinal) protein, CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.52  E-value=8.2e-08  Score=49.63  Aligned_cols=40  Identities=23%  Similarity=0.518  Sum_probs=35.6

Q ss_pred             ccccCCccccCCceeeeCCeeecHHHHHhhcCCCcccccCc
Q psy10674         48 VCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDE   88 (138)
Q Consensus        48 ~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~~C~~C~~   88 (138)
                      +|..|++.|......++|+++||+.||.++|| |+..+.+.
T Consensus         1 KC~~C~k~Lds~t~~ehdg~~YCk~CY~k~fG-PKG~g~G~   40 (49)
T d1b8ta4           1 RCAKCGKSLESTTLADKDGEIYCKGCYAKNFG-PKGFGFGQ   40 (49)
T ss_dssp             BCTTTCCBCCSSSEEEETTEEEEHHHHHHHTC-CCCCCCCC
T ss_pred             ChhhcCCccCCCcccccCCcccchhhhhhccC-CCccCccc
Confidence            58999999988888999999999999999998 78777664

>d1u5sb2 g.39.1.3 (B:103-137) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Pinch (particularly interesting new Cys-His) protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=9.3e-08  Score=44.66  Aligned_cols=33  Identities=27%  Similarity=0.747  Sum_probs=31.1

Q ss_pred             cccccCCccccCCceeeeCCeeecHHHHHhhcC
Q psy10674         47 FVCSTCDELLVDLMYFHYKGNVYCLRDYATMLD   79 (138)
Q Consensus        47 f~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~   79 (138)
                      |+|..|.+|+-+...+++.|..||+.+|.+++|
T Consensus         1 FvCA~CekPF~G~rhyE~~g~ayCe~Hy~qLfg   33 (35)
T d1u5sb2           1 FVCAKCEKPFLGHRHYERKGLAYCETHYNQLFG   33 (35)
T ss_dssp             CBCTTTCCBCSSSCCEEETTEEECHHHHHHHCS
T ss_pred             CcccccCCccCCchhhhhcCchHHHHHHHHHhc
Confidence            789999999988899999999999999999986

>d2d8za2 g.39.1.3 (A:33-64) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 2, FHL2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=7.2e-08  Score=45.02  Aligned_cols=31  Identities=23%  Similarity=0.584  Sum_probs=28.8

Q ss_pred             ccccCCccccCCceeeeCCeeecHHHHHhhc
Q psy10674         48 VCSTCDELLVDLMYFHYKGNVYCLRDYATML   78 (138)
Q Consensus        48 ~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~   78 (138)
                      .|..|+++|.++.|..+|++|||-.||.+++
T Consensus         1 ~C~~C~~~L~GQry~~rd~~PyC~~Cf~~lf   31 (32)
T d2d8za2           1 VCTACRKQLSGQRFTARDDFAYCLNCFCDLY   31 (32)
T ss_dssp             BCSSSCCBCTTSCCEESSSSEECHHHHHHHT
T ss_pred             CcccCCccccCceeeecCCCeehHHhhHhhc
Confidence            4788999999999999999999999999876

>d1rutx3 g.39.1.3 (X:83-113) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: LIM only 4 (Lmo4)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.44  E-value=3.4e-08  Score=45.98  Aligned_cols=28  Identities=32%  Similarity=0.683  Sum_probs=25.7

Q ss_pred             CcccccCcccccCcEEE-eCCCccccCCc
Q psy10674         81 PRCHACDELIFVNEYTL-AENKTFHVKHF  108 (138)
Q Consensus        81 ~~C~~C~~~I~~~~~~~-~~~~~~H~~CF  108 (138)
                      ..|++|++.|.+.++++ |+++.||.+||
T Consensus         3 g~Ca~C~~~I~~~e~VmRA~~~VyHl~CF   31 (31)
T d1rutx3           3 GACSACGQSIPASELVMRAQGNVYHLKCF   31 (31)
T ss_dssp             EECTTTCCEECTTSEEEEETTEEECGGGC
T ss_pred             cccccccCcCChhHhheecccceeeeccC
Confidence            47999999999998777 99999999998

>d2dj7a2 g.39.1.3 (A:8-43) Actin-binding LIM protein 3, abLIM-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Actin-binding LIM protein 3, abLIM-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=9e-08  Score=45.27  Aligned_cols=30  Identities=33%  Similarity=0.533  Sum_probs=26.8

Q ss_pred             CCCcccccCcccccCcEEEeCCCccccCCc
Q psy10674         79 DIPRCHACDELIFVNEYTLAENKTFHVKHF  108 (138)
Q Consensus        79 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF  108 (138)
                      +...|++|++.|..+..+.|+++.||..||
T Consensus         7 g~~~CagCg~eik~gQaL~ALdkqWH~~CF   36 (36)
T d2dj7a2           7 GPSHCAGCKEEIKHGQSLLALDKQWHVSCF   36 (36)
T ss_dssp             SCSCCTTTCCCCSSSCCEEETTEEECTTTC
T ss_pred             CCccccccchhhhCCceeeeeecceeeeeC
Confidence            346899999999988877799999999998

>d2dj7a1 g.39.1.3 (A:44-74) Actin-binding LIM protein 3, abLIM-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Actin-binding LIM protein 3, abLIM-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=1.7e-07  Score=43.10  Aligned_cols=31  Identities=32%  Similarity=0.718  Sum_probs=27.6

Q ss_pred             ccccCCccccCCceeeeCCeeecHHHHHhhcC
Q psy10674         48 VCSTCDELLVDLMYFHYKGNVYCLRDYATMLD   79 (138)
Q Consensus        48 ~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~   79 (138)
                      +|..|++.|.+ .|..+||.|||+.+|...||
T Consensus         1 kC~~C~~vL~g-EYm~kdG~PyCe~DY~~~FG   31 (31)
T d2dj7a1           1 KCQTCSVILTG-EYISKDGVPYCESDYHAQFG   31 (31)
T ss_dssp             BCSSSCCBCSS-CCEEETTEEECTTHHHHHTT
T ss_pred             CccccCccccc-eeecCCCCcccHHHHHHhcC
Confidence            58999999976 59999999999999998874

>d1g47a2 g.39.1.3 (A:36-70) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Pinch (particularly interesting new Cys-His) protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=4.1e-08  Score=47.60  Aligned_cols=25  Identities=16%  Similarity=0.396  Sum_probs=23.7

Q ss_pred             ccccccccccCCCCeeecCCCCCccC
Q psy10674        108 FCCYECDKELCNQSYIPVTESRPGQD  133 (138)
Q Consensus       108 F~C~~C~~~l~~~~f~~~~~~~~y~~  133 (138)
                      |+|+.|+++|++..|++.+ |+|||.
T Consensus         1 F~C~~C~~~f~~~~F~e~~-G~pYCe   25 (35)
T d1g47a2           1 FVCAQCFQQFPEGLFYEFE-GRKYCE   25 (35)
T ss_dssp             CCCTTTCCCCGGGCSEEET-TEEECH
T ss_pred             CCCCCCcCCCCCCCeEEEC-CEecCh
Confidence            7899999999999999999 999995

>d1x4la1 g.39.1.3 (A:8-36) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 2, FHL2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=1.5e-07  Score=42.38  Aligned_cols=26  Identities=27%  Similarity=0.571  Sum_probs=22.9

Q ss_pred             ccccCccccc---CcEEEeCCCccccCCc
Q psy10674         83 CHACDELIFV---NEYTLAENKTFHVKHF  108 (138)
Q Consensus        83 C~~C~~~I~~---~~~~~~~~~~~H~~CF  108 (138)
                      |+.|.+||.+   ..+|.+.++.||.+||
T Consensus         1 C~~C~kPItg~gg~kyisFE~R~WH~~CF   29 (29)
T d1x4la1           1 CAGCTNPISGLGGTKYISFEERQWHNDCF   29 (29)
T ss_dssp             BTTTTBCCCCSSSCSCEECSSCEECTTTC
T ss_pred             CCccCCcccccCCceEEEeecccccccCC
Confidence            7899999985   3588899999999998

>d1rutx1 g.39.1.3 (X:19-48) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: LIM only 4 (Lmo4)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.30  E-value=1.6e-07  Score=43.31  Aligned_cols=28  Identities=21%  Similarity=0.367  Sum_probs=25.3

Q ss_pred             CcccccCcccccCcEEEeCCCccccCCc
Q psy10674         81 PRCHACDELIFVNEYTLAENKTFHVKHF  108 (138)
Q Consensus        81 ~~C~~C~~~I~~~~~~~~~~~~~H~~CF  108 (138)
                      ..|++|+++|.++-++.+.++.||..|.
T Consensus         3 ~~CaGC~~~I~DRflL~v~dr~WH~~CL   30 (30)
T d1rutx1           3 KRCAGCGGKIADRFLLYAMDSYWHSRCL   30 (30)
T ss_dssp             CBBTTTCCBCCCSEEEEETTEEECGGGC
T ss_pred             cccCCCCCccchhhhhccchhhhhhhhC
Confidence            5899999999998888899999999884

>d1j2oa1 g.39.1.3 (A:1-30) Rhombotin-2 (Lmo2) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Rhombotin-2 (Lmo2)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.27  E-value=2.8e-07  Score=42.34  Aligned_cols=27  Identities=19%  Similarity=0.283  Sum_probs=24.8

Q ss_pred             CcccccCcccccCcEEEeCCCccccCC
Q psy10674         81 PRCHACDELIFVNEYTLAENKTFHVKH  107 (138)
Q Consensus        81 ~~C~~C~~~I~~~~~~~~~~~~~H~~C  107 (138)
                      ..|++|+++|.++-++.+.++.||.+|
T Consensus         4 ~~CaGC~~~I~DRflL~a~Dr~WH~~C   30 (30)
T d1j2oa1           4 LTCGGCQQNIGDRYFLKAIDQYWHEDC   30 (30)
T ss_dssp             BCBSSSCSCBCSSEEEECSSSEECTTT
T ss_pred             cccCCCCCcchHHHHHHHHHHHHhcCC
Confidence            579999999999888889999999987

>d2cu8a2 g.39.1.3 (A:38-70) Cysteine-rich (intestinal) protein, CRP, CRIP {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=1e-07  Score=44.19  Aligned_cols=27  Identities=22%  Similarity=0.337  Sum_probs=24.9

Q ss_pred             cccccccccCCCCeeecCCCCCccCCCC
Q psy10674        109 CCYECDKELCNQSYIPVTESRPGQDSPG  136 (138)
Q Consensus       109 ~C~~C~~~l~~~~f~~~~~~~~y~~~~~  136 (138)
                      +|..|++.|......+++ |+|||..|+
T Consensus         1 kCekC~ktL~~G~HaEH~-gkPYC~~PC   27 (33)
T d2cu8a2           1 KCERCSKTLTPGGHAEHD-GKPFCHKPC   27 (33)
T ss_dssp             BCSSSCCBCCTTSCEEET-TEEECTTTH
T ss_pred             CchhcccccCCCCccccC-CCcCcCcch
Confidence            589999999988999999 999999875

>d2cuqa1 g.39.1.3 (A:43-74) Four and a half LIM domains 3, FHL3 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains 3, FHL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=5.7e-07  Score=41.36  Aligned_cols=31  Identities=19%  Similarity=0.597  Sum_probs=28.7

Q ss_pred             ccccCCccccCCceeeeCCeeecHHHHHhhc
Q psy10674         48 VCSTCDELLVDLMYFHYKGNVYCLRDYATML   78 (138)
Q Consensus        48 ~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~   78 (138)
                      .|..|+++|.++.|..+|.++||-+||-+++
T Consensus         1 vCt~Ck~~LaGqrFTSrde~pYC~~Cfg~Lf   31 (32)
T d2cuqa1           1 VCTGCQTPLAGQQFTSRDEDPYCVACFGELF   31 (32)
T ss_dssp             BCSSSCCBCTTCCEEECSSSEEEHHHHHHHT
T ss_pred             CccccCccccCCccccCCCCccHHHHhHhhc
Confidence            4889999999999999999999999998876

>d1x3ha1 g.39.1.3 (A:8-42) Leupaxin {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Leupaxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=1.7e-07  Score=45.37  Aligned_cols=28  Identities=39%  Similarity=1.028  Sum_probs=23.4

Q ss_pred             CcccccccccccCCCeEEEeccccCCCCCCcccCc
Q psy10674         13 HFCCYECDKKVQFENYTGKITQSQESEVLWHPQCF   47 (138)
Q Consensus        13 ~~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf   47 (138)
                      .++|..|+++|. ++++.++      +..||++||
T Consensus         8 apkC~~C~~~I~-g~~v~Al------~~~wHpeCF   35 (35)
T d1x3ha1           8 SPKCGGCNRPVL-ENYLSAM------DTVWHPECF   35 (35)
T ss_dssp             SCBCTTTCCBCC-SSCEEET------TEEECTTTC
T ss_pred             ChhhhhcCCccc-chheeec------CCccCcccC
Confidence            478999999998 7777664      559999998

>d2d8za2 g.39.1.3 (A:33-64) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 2, FHL2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=2.5e-07  Score=43.13  Aligned_cols=24  Identities=21%  Similarity=0.317  Sum_probs=22.1

Q ss_pred             cccccccccCCCCeeecCCCCCccC
Q psy10674        109 CCYECDKELCNQSYIPVTESRPGQD  133 (138)
Q Consensus       109 ~C~~C~~~l~~~~f~~~~~~~~y~~  133 (138)
                      .|..|+++|+|++|+..| ++|||-
T Consensus         1 ~C~~C~~~L~GQry~~rd-~~PyC~   24 (32)
T d2d8za2           1 VCTACRKQLSGQRFTARD-DFAYCL   24 (32)
T ss_dssp             BCSSSCCBCTTSCCEESS-SSEECH
T ss_pred             CcccCCccccCceeeecC-CCeehH
Confidence            488999999999999999 999994

>d1ibia2 g.39.1.3 (A:145-175) Cysteine-rich (intestinal) protein, CRP, CRIP {Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]

Probab=98.21  E-value=5.8e-07  Score=40.50  Aligned_cols=30  Identities=30%  Similarity=0.670  Sum_probs=27.3

Q ss_pred             cccccCCccccCCceeeeCCeeecHHHHHh
Q psy10674         47 FVCSTCDELLVDLMYFHYKGNVYCLRDYAT   76 (138)
Q Consensus        47 f~C~~C~~~l~~~~~~~~~~~~yC~~c~~~   76 (138)
                      |+|..|++.|.......++|.+||+.||.+
T Consensus         1 frca~cgk~lestt~adkdgeiyck~cyak   30 (31)
T d1ibia2           1 FRCAKCGKSLESTTLTEKEGEIYCKGCYAK   30 (31)
T ss_dssp             EECSSSCCEECSSCSEEETTEEECHHHHHH
T ss_pred             CccccccCccccceeeccCCcEEEeeeeec
Confidence            789999999988788899999999999965

>d1imla2 g.39.1.3 (A:29-76) Cysteine-rich (intestinal) protein, CRP, CRIP {Rat (Rattus rattus) [TaxId: 10117]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=98.20  E-value=5.8e-07  Score=45.84  Aligned_cols=32  Identities=25%  Similarity=0.500  Sum_probs=29.7

Q ss_pred             ccccCCccccCCceeeeCCeeec-HHHHHhhcC
Q psy10674         48 VCSTCDELLVDLMYFHYKGNVYC-LRDYATMLD   79 (138)
Q Consensus        48 ~C~~C~~~l~~~~~~~~~~~~yC-~~c~~~~~~   79 (138)
                      +|..|++.|......+++++||| +.||..+||
T Consensus         1 kC~~C~K~L~sg~~aeHdg~pYC~k~CY~~~FG   33 (48)
T d1imla2           1 KCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFG   33 (48)
T ss_dssp             BCTTTCCBCCTTTEEEETTEEEETTTHHHHHSS
T ss_pred             CchhcCcCcCCCChhhcCCcccccccchhhccC
Confidence            58999999988889999999999 789999997

>d1x68a1 g.39.1.3 (A:8-36) Four and a half LIM domains protein 5, FHL-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 5, FHL-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=3.6e-07  Score=41.07  Aligned_cols=26  Identities=23%  Similarity=0.537  Sum_probs=22.7

Q ss_pred             ccccCccccc---CcEEEeCCCccccCCc
Q psy10674         83 CHACDELIFV---NEYTLAENKTFHVKHF  108 (138)
Q Consensus        83 C~~C~~~I~~---~~~~~~~~~~~H~~CF  108 (138)
                      |..|.+||.+   ..+|.+.++.||.+||
T Consensus         1 C~~C~kPItg~gG~k~isFedR~WH~~CF   29 (29)
T d1x68a1           1 CVACSKPISGLTGAKFICFQDSQWHSECF   29 (29)
T ss_dssp             CTTTCCCCCTTTTCCEEEETTEEEEGGGC
T ss_pred             CccccccccccCCceEEEeehhhcccccC
Confidence            7889999975   3588899999999998

>d2d8ya2 g.39.1.3 (A:44-85) Eplin, LIMA1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Eplin, LIMA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=5.9e-07  Score=44.84  Aligned_cols=32  Identities=25%  Similarity=0.615  Sum_probs=29.8

Q ss_pred             ccccCCccccCCceeeeCCeeecHHHHHhhcC
Q psy10674         48 VCSTCDELLVDLMYFHYKGNVYCLRDYATMLD   79 (138)
Q Consensus        48 ~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~   79 (138)
                      +|..|++.|....|...+|.+||+.||.++|.
T Consensus         1 rC~~C~~~Ls~~~yas~~G~lYCkpHf~qLF~   32 (42)
T d2d8ya2           1 RCSYCNNKLSLGTYASLHGRIYCKPHFNQLFK   32 (42)
T ss_dssp             BCTTTCCBCCTTTCCCSSSCCCCHHHHHHHSC
T ss_pred             CcCcCCCCccCCcchhhCCEeccHHHHHHHHH
Confidence            68999999988899999999999999999985

>d2dara1 g.39.1.3 (A:53-84) PDZ and LIM domain protein 5, Enigma {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: PDZ and LIM domain protein 5, Enigma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=1.3e-06  Score=40.28  Aligned_cols=31  Identities=23%  Similarity=0.623  Sum_probs=28.2

Q ss_pred             ccccCCccccCCceeeeCCeeecHHHHHhhc
Q psy10674         48 VCSTCDELLVDLMYFHYKGNVYCLRDYATML   78 (138)
Q Consensus        48 ~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~   78 (138)
                      .|+.|+.+|.+..|.+++|++||+.||.+.+
T Consensus         1 nCa~C~~sL~d~gFVEE~g~lYCe~Cye~ff   31 (32)
T d2dara1           1 NCAHCKNTMAYIGFVEEKGALYCELCYEKFF   31 (32)
T ss_dssp             BCSSSCCBCSSSCBEESSSCEECHHHHHHHT
T ss_pred             CcccccccHhhcceeeecCcEeHHHHHHHhc
Confidence            4789999999999999999999999998765

>d2d8ya1 g.39.1.3 (A:9-43) Eplin, LIMA1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Eplin, LIMA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=8.1e-07  Score=42.68  Aligned_cols=29  Identities=28%  Similarity=0.630  Sum_probs=27.0

Q ss_pred             CCcccccCcccccCcEEEeCCCccccCCc
Q psy10674         80 IPRCHACDELIFVNEYTLAENKTFHVKHF  108 (138)
Q Consensus        80 ~~~C~~C~~~I~~~~~~~~~~~~~H~~CF  108 (138)
                      +++|..|++.+...+.+.+.|+.||..||
T Consensus         7 ~~kC~~C~K~VY~~E~~~a~g~~~Hk~CF   35 (35)
T d2d8ya1           7 RETCVECQKTVYPMERLLANQQVFHISCF   35 (35)
T ss_dssp             SCBCTTTCCBCCTTSEEECSSSEEETTTC
T ss_pred             CcccccCCCEEeeeeeEecCCeehhhccC
Confidence            47999999999998888899999999998

>d1b8ta3 g.39.1.3 (A:101-143) Cysteine-rich (intestinal) protein, CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.11  E-value=3.9e-07  Score=46.07  Aligned_cols=29  Identities=21%  Similarity=0.575  Sum_probs=26.7

Q ss_pred             CCcccccCcccccCcEEEeCCCccccCCc
Q psy10674         80 IPRCHACDELIFVNEYTLAENKTFHVKHF  108 (138)
Q Consensus        80 ~~~C~~C~~~I~~~~~~~~~~~~~H~~CF  108 (138)
                      +++|..|++.+...+.+.+.|+.||..||
T Consensus        15 ~~kC~~C~k~VY~~E~~~~~g~~~Hk~CF   43 (43)
T d1b8ta3          15 SDGCPRCGQAVYAAEKVIGAGKSWHKSCF   43 (43)
T ss_dssp             CEECTTTSCEECSSSCEEETTEEECTTTC
T ss_pred             CCcCccCCCEeeHHHHhhcCCCccccCCC
Confidence            47999999999998877899999999998

>d1x6aa1 g.39.1.3 (A:8-41) Lim domain kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Lim domain kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=2.4e-07  Score=43.32  Aligned_cols=33  Identities=24%  Similarity=0.516  Sum_probs=27.4

Q ss_pred             HHHhhcCCCcccccCcccccCcEEEeCCCccccCC
Q psy10674         73 DYATMLDIPRCHACDELIFVNEYTLAENKTFHVKH  107 (138)
Q Consensus        73 c~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~C  107 (138)
                      +|..+|| +.|.+|.+.|. +.+++|.+.+|||+|
T Consensus         2 dYw~kfg-e~C~~C~~~it-GpvMvAG~~K~HPEC   34 (34)
T d1x6aa1           2 DYWGKFG-EFCHGCSLLMT-GPFMVAGEFKYHPEC   34 (34)
T ss_dssp             CSSCCSS-CBCTTTCCBCC-SCCBCCTTCCBCTTS
T ss_pred             cHHHHHH-HHhhhhHhhcc-cceeeecccccCCCC
Confidence            4677887 79999999885 566669999999998

>d2dara2 g.39.1.3 (A:8-52) PDZ and LIM domain protein 5, Enigma {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: PDZ and LIM domain protein 5, Enigma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=8e-07  Score=44.70  Aligned_cols=29  Identities=21%  Similarity=0.639  Sum_probs=24.6

Q ss_pred             CCcccccccccccCCCeEEEeccccCCCCCCcccCc
Q psy10674         12 KHFCCYECDKKVQFENYTGKITQSQESEVLWHPQCF   47 (138)
Q Consensus        12 ~~~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf   47 (138)
                      ..+.|..|+++|. +.++..+      |+.||++||
T Consensus        17 r~P~C~~C~~pI~-g~~vtAl------gk~WHPEhF   45 (45)
T d2dara2          17 RTPMCAHCNQVIR-GPFLVAL------GKSWHPEEF   45 (45)
T ss_dssp             CCCBBSSSCCBCC-SCEEEET------TEEECTTTC
T ss_pred             CCeeccccCCccc-Cceeeec------CCccCcCCC
Confidence            4688999999998 7888775      559999998

>d1x3ha2 g.39.1.3 (A:43-74) Leupaxin {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Leupaxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=8.2e-07  Score=41.55  Aligned_cols=24  Identities=21%  Similarity=0.508  Sum_probs=22.3

Q ss_pred             cccccccccCCCCeeecCCCCCccC
Q psy10674        109 CCYECDKELCNQSYIPVTESRPGQD  133 (138)
Q Consensus       109 ~C~~C~~~l~~~~f~~~~~~~~y~~  133 (138)
                      +|..|.+|+.+.+|++.+ |+|||.
T Consensus         1 VC~~C~~PF~~~~Fy~~~-g~PyCe   24 (32)
T d1x3ha2           1 VCGDCFTSFSTGSFFELD-GRPFCE   24 (32)
T ss_dssp             BCSSSCCBSCSSCCEESS-SCEECH
T ss_pred             CcCccCCcCCCCCeEeEC-CccchH
Confidence            489999999999999999 999995

>d2cu8a2 g.39.1.3 (A:38-70) Cysteine-rich (intestinal) protein, CRP, CRIP {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=1.7e-06  Score=39.99  Aligned_cols=32  Identities=25%  Similarity=0.471  Sum_probs=27.9

Q ss_pred             ccccCCccccCCceeeeCCeeecH-HHHHhhcC
Q psy10674         48 VCSTCDELLVDLMYFHYKGNVYCL-RDYATMLD   79 (138)
Q Consensus        48 ~C~~C~~~l~~~~~~~~~~~~yC~-~c~~~~~~   79 (138)
                      +|..|++.|......+++|++||. .||..+||
T Consensus         1 kCekC~ktL~~G~HaEH~gkPYC~~PCY~aLFG   33 (33)
T d2cu8a2           1 KCERCSKTLTPGGHAEHDGKPFCHKPCYATLFG   33 (33)
T ss_dssp             BCSSSCCBCCTTSCEEETTEEECTTTHHHHHSC
T ss_pred             CchhcccccCCCCccccCCCcCcCcchHHhhcC
Confidence            588999999888899999999995 59987764

>d2cu8a1 g.39.1.3 (A:8-37) Cysteine-rich (intestinal) protein, CRP, CRIP {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=1.5e-06  Score=39.79  Aligned_cols=28  Identities=21%  Similarity=0.522  Sum_probs=25.7

Q ss_pred             CcccccCcccccCcEEEeCCCccccCCc
Q psy10674         81 PRCHACDELIFVNEYTLAENKTFHVKHF  108 (138)
Q Consensus        81 ~~C~~C~~~I~~~~~~~~~~~~~H~~CF  108 (138)
                      ++|++|++++...+-+.+.|+.||..|.
T Consensus         3 ~~CprC~K~VYfaEk~~~lgk~WHk~Cl   30 (30)
T d2cu8a1           3 SKCPKCDKTVYFAEKVSSLGKDWHKFCL   30 (30)
T ss_dssp             CBCTTTCCBCCTTTEEEETTEEEETTTC
T ss_pred             CcCCCCCCceeeHHhhccCCcccccccC
Confidence            7999999999999988899999999874

>d2co8a2 g.39.1.3 (A:8-43) Nedd9 interacting protein with calponin homology, NICAL (MICAL1) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Nedd9 interacting protein with calponin homology, NICAL (MICAL1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=1e-06  Score=42.50  Aligned_cols=29  Identities=28%  Similarity=0.453  Sum_probs=26.6

Q ss_pred             CCcccccCcccccCcEEEeCCCccccCCc
Q psy10674         80 IPRCHACDELIFVNEYTLAENKTFHVKHF  108 (138)
Q Consensus        80 ~~~C~~C~~~I~~~~~~~~~~~~~H~~CF  108 (138)
                      .++|..|++.+...+.+.|.|+.||..||
T Consensus         8 ~~~C~~C~K~VY~~Erl~a~g~~yHk~CF   36 (36)
T d2co8a2           8 GDLCALCGEHLYVLERLCVNGHFFHRSCF   36 (36)
T ss_dssp             SCBCSSSCCBCCTTTBCCBTTBCCBTTTC
T ss_pred             CCcccccCCEEeeeeEEEecCcEeccccC
Confidence            47999999999988877899999999998

>d1x4ka1 g.39.1.3 (A:35-66) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 2, FHL2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=4.7e-06  Score=38.45  Aligned_cols=31  Identities=13%  Similarity=0.470  Sum_probs=28.4

Q ss_pred             ccccCCccccCCceeeeCCeeecHHHHHhhc
Q psy10674         48 VCSTCDELLVDLMYFHYKGNVYCLRDYATML   78 (138)
Q Consensus        48 ~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~   78 (138)
                      .|..|+.||+.++|..+++..||..||++.|
T Consensus         1 ~C~~C~qPIGtksfipk~~~~yCvpCyE~kf   31 (32)
T d1x4ka1           1 ICHRCQQPIGTKSFIPKDNQNFCVPCYEKQH   31 (32)
T ss_dssp             CCSSSCCCCCSSSEEEETTEEEEHHHHHHHT
T ss_pred             CcccccCcccccccccCCCCceEeecchhhc
Confidence            3789999999899999999999999999876

>d1x4ka2 g.39.1.3 (A:8-34) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 2, FHL2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=1.4e-06  Score=38.30  Aligned_cols=26  Identities=19%  Similarity=0.488  Sum_probs=22.4

Q ss_pred             ccccCcccccCcE-EEeCCCccccCCc
Q psy10674         83 CHACDELIFVNEY-TLAENKTFHVKHF  108 (138)
Q Consensus        83 C~~C~~~I~~~~~-~~~~~~~~H~~CF  108 (138)
                      |..|.+.|.++.. +...|..||..||
T Consensus         1 C~~C~ktiMPGsrKme~kG~~WHEtCF   27 (27)
T d1x4ka2           1 CQECKKTIMPGTRKMEYKGSSWHETCF   27 (27)
T ss_dssp             BSSSCCCCCSSSCEEEETTEEEETTTT
T ss_pred             CccccccccCCceeecccCCccccccC
Confidence            7889999998864 4489999999998

>d1b8ta2 g.39.1.3 (A:36-100) Cysteine-rich (intestinal) protein, CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.96  E-value=4.4e-06  Score=45.40  Aligned_cols=32  Identities=19%  Similarity=0.398  Sum_probs=29.5

Q ss_pred             ccccCCccccCCceeeeCCeeecHHHHHhhcC
Q psy10674         48 VCSTCDELLVDLMYFHYKGNVYCLRDYATMLD   79 (138)
Q Consensus        48 ~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~   79 (138)
                      .|..|++.|......++++++||+.||.+.||
T Consensus         1 ~C~~C~K~LdS~~~~eh~~e~YCk~CY~k~fG   32 (65)
T d1b8ta2           1 LCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYG   32 (65)
T ss_dssp             BCTTTCCBCCSSSEEEETTEEEEHHHHHHHHS
T ss_pred             CchhcCCccCCCccccCCCcccchhhhccccC
Confidence            38899999988889999999999999999997

>d1x62a2 g.39.1.3 (A:8-42) PDZ and LIM domain protein 1 Elfin {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: PDZ and LIM domain protein 1 Elfin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=2.4e-06  Score=39.85  Aligned_cols=28  Identities=18%  Similarity=0.465  Sum_probs=24.8

Q ss_pred             CCcccccCcccccCcEEEeCCCccccCCc
Q psy10674         80 IPRCHACDELIFVNEYTLAENKTFHVKHF  108 (138)
Q Consensus        80 ~~~C~~C~~~I~~~~~~~~~~~~~H~~CF  108 (138)
                      .|.|.+|+..|.+ .++.++++.+||+||
T Consensus         8 lp~CdkCg~GIVG-~~VK~rDk~rHPeCf   35 (35)
T d1x62a2           8 LPMCDKCGTGIVG-VFVKLRDRHRHPECY   35 (35)
T ss_dssp             CCCCSSSCCCCCS-SCEECSSCEECTTTT
T ss_pred             CccccccCCCcEe-EEEEeccccCCCCCC
Confidence            4899999999966 567799999999998

>d1wyha1 g.39.1.3 (A:35-66) Four and a half LIM domains 3, FHL3 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains 3, FHL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=6.3e-06  Score=37.93  Aligned_cols=31  Identities=29%  Similarity=0.649  Sum_probs=28.4

Q ss_pred             ccccCCccccCCceeeeCCeeecHHHHHhhc
Q psy10674         48 VCSTCDELLVDLMYFHYKGNVYCLRDYATML   78 (138)
Q Consensus        48 ~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~   78 (138)
                      .|..|+.||+.++|..+++..||..||++.|
T Consensus         1 ~C~~C~qPIGtkSFip~~~~~yCvpCYE~kf   31 (32)
T d1wyha1           1 LCSGCEQPLGSRSFVPDKGAHYCVPCYENKF   31 (32)
T ss_dssp             BCTTTCCBTTTSCEEEETTEEEEHHHHHHHT
T ss_pred             CcccccCcccccccccCCCcEEEEecccccc
Confidence            3788999999899999999999999999876

>d1wyha2 g.39.1.3 (A:8-34) Four and a half LIM domains 3, FHL3 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains 3, FHL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=2.2e-06  Score=37.58  Aligned_cols=26  Identities=31%  Similarity=0.626  Sum_probs=22.3

Q ss_pred             ccccCcccccCcEEE-eCCCccccCCc
Q psy10674         83 CHACDELIFVNEYTL-AENKTFHVKHF  108 (138)
Q Consensus        83 C~~C~~~I~~~~~~~-~~~~~~H~~CF  108 (138)
                      |..|.+.|.++...+ ..|..||..||
T Consensus         1 C~~C~ktiMPGsrKmey~G~sWHE~CF   27 (27)
T d1wyha2           1 CSACGETVMPGSRKLEYGGQTWHEHCF   27 (27)
T ss_dssp             CSSSCCBCCSSSCEECSTTCCEETTTC
T ss_pred             CccccceecCCcccccccCcccccccC
Confidence            778999999886444 89999999998

>d1zfoa_ g.39.1.4 (A:) LASP-1 {Pig (Sus scrofa) [TaxId: 9823]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LASP-1
domain: LASP-1
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.92  E-value=1.1e-06  Score=39.70  Aligned_cols=28  Identities=25%  Similarity=0.632  Sum_probs=25.8

Q ss_pred             CcccccCcccccCcEEEeCCCccccCCc
Q psy10674         81 PRCHACDELIFVNEYTLAENKTFHVKHF  108 (138)
Q Consensus        81 ~~C~~C~~~I~~~~~~~~~~~~~H~~CF  108 (138)
                      +.|++|++.+.+.+-+.-.++.||..||
T Consensus         3 ~~CaRC~k~VYp~Ekl~ClDk~WHK~CF   30 (30)
T d1zfoa_           3 PNCARCGKIVYPTEKVNCLDKFWHKACF   30 (30)
T ss_dssp             CBCSSSCSBCCGGGCCCSSSSCCCGGGC
T ss_pred             CcccccCCccccHHHhhhhHHHHhhccC
Confidence            6899999999998878799999999998

>d1x61a2 g.39.1.3 (A:35-66) Thyroid receptor interacting protein 6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Thyroid receptor interacting protein 6, TRIP6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=6.4e-06  Score=37.45  Aligned_cols=30  Identities=30%  Similarity=0.639  Sum_probs=27.2

Q ss_pred             ccccCCccccCCceeeeCCeeecHHHHHhh
Q psy10674         48 VCSTCDELLVDLMYFHYKGNVYCLRDYATM   77 (138)
Q Consensus        48 ~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~   77 (138)
                      .|.+|+..|.++.|+..+.+.||+.||...
T Consensus         1 vC~tC~~kLRGqpFYAvekkayCE~CYi~t   30 (32)
T d1x61a2           1 VCSTCRAQLRGQHFYAVERRAYCEGCYVAT   30 (32)
T ss_dssp             BCSSSCCBCTTSCEEESSSCEEEHHHHHHH
T ss_pred             CeeEeCceecCCcceEeeccccccceeeee
Confidence            488999999999999999999999999753

>d2cuqa1 g.39.1.3 (A:43-74) Four and a half LIM domains 3, FHL3 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains 3, FHL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=3e-06  Score=38.89  Aligned_cols=24  Identities=21%  Similarity=0.414  Sum_probs=22.2

Q ss_pred             cccccccccCCCCeeecCCCCCccC
Q psy10674        109 CCYECDKELCNQSYIPVTESRPGQD  133 (138)
Q Consensus       109 ~C~~C~~~l~~~~f~~~~~~~~y~~  133 (138)
                      .|..|+++|.|++|...| .+|||.
T Consensus         1 vCt~Ck~~LaGqrFTSrd-e~pYC~   24 (32)
T d2cuqa1           1 VCTGCQTPLAGQQFTSRD-EDPYCV   24 (32)
T ss_dssp             BCSSSCCBCTTCCEEECS-SSEEEH
T ss_pred             CccccCccccCCccccCC-CCccHH
Confidence            489999999999999999 999995

>d2cura1 g.39.1.3 (A:33-63) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 1, FHL-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=8.4e-06  Score=36.95  Aligned_cols=29  Identities=28%  Similarity=0.642  Sum_probs=26.4

Q ss_pred             ccccCCccccCCceeeeCCeeecHHHHHh
Q psy10674         48 VCSTCDELLVDLMYFHYKGNVYCLRDYAT   76 (138)
Q Consensus        48 ~C~~C~~~l~~~~~~~~~~~~yC~~c~~~   76 (138)
                      .|..|+++|.+..|-..++++||-+||..
T Consensus         1 vC~~C~K~Lag~rFTa~eDq~yCVdCYK~   29 (31)
T d2cura1           1 VCVTCSKKLAGQRFTAVEDQYYCVDCYKN   29 (31)
T ss_dssp             BCTTTCCBCTTSCEEECSSCEEEHHHHHH
T ss_pred             CcccccchhcCceeEEecceEEEeeeecc
Confidence            48899999999999999999999999964

>d1x64a1 g.39.1.3 (A:8-52) PDZ and LIM domain protein 3, PDLIM3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: PDZ and LIM domain protein 3, PDLIM3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.85  E-value=3.3e-06  Score=41.95  Aligned_cols=28  Identities=29%  Similarity=0.460  Sum_probs=24.9

Q ss_pred             CCcccccCcccccCcEEEeCCCccccCCc
Q psy10674         80 IPRCHACDELIFVNEYTLAENKTFHVKHF  108 (138)
Q Consensus        80 ~~~C~~C~~~I~~~~~~~~~~~~~H~~CF  108 (138)
                      .+.|.+|+..|.+ .++.++++.+|++||
T Consensus        18 LP~CdkCg~GIVG-~~VK~rDK~rHPeCf   45 (45)
T d1x64a1          18 MPLCDKCGSGIVG-AVVKARDKYRHPECF   45 (45)
T ss_dssp             CCBCTTTCCBCCS-CCEESSSCEECTTTC
T ss_pred             CccccccCCCcEE-EEEEeccccCCCCCC
Confidence            4899999999965 577799999999998

>d1rutx3 g.39.1.3 (X:83-113) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: LIM only 4 (Lmo4)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.75  E-value=5.2e-06  Score=38.38  Aligned_cols=29  Identities=17%  Similarity=0.518  Sum_probs=25.5

Q ss_pred             cccccccccccCCCeEEEeccccCCCCCCcccCc
Q psy10674         14 FCCYECDKKVQFENYTGKITQSQESEVLWHPQCF   47 (138)
Q Consensus        14 ~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf   47 (138)
                      ..|..|++.|.+.+++..+     ++..||..||
T Consensus         3 g~Ca~C~~~I~~~e~VmRA-----~~~VyHl~CF   31 (31)
T d1rutx3           3 GACSACGQSIPASELVMRA-----QGNVYHLKCF   31 (31)
T ss_dssp             EECTTTCCEECTTSEEEEE-----TTEEECGGGC
T ss_pred             cccccccCcCChhHhheec-----ccceeeeccC
Confidence            4699999999999999876     4679999998

>d1j2oa1 g.39.1.3 (A:1-30) Rhombotin-2 (Lmo2) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Rhombotin-2 (Lmo2)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.72  E-value=9.3e-06  Score=37.14  Aligned_cols=28  Identities=25%  Similarity=0.729  Sum_probs=21.8

Q ss_pred             CcccccccccccCCCeEEEeccccCCCCCCcccC
Q psy10674         13 HFCCYECDKKVQFENYTGKITQSQESEVLWHPQC   46 (138)
Q Consensus        13 ~~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~C   46 (138)
                      -..|++|+++|. ++++..+     .++.||..|
T Consensus         3 ~~~CaGC~~~I~-DRflL~a-----~Dr~WH~~C   30 (30)
T d1j2oa1           3 LLTCGGCQQNIG-DRYFLKA-----IDQYWHEDC   30 (30)
T ss_dssp             CBCBSSSCSCBC-SSEEEEC-----SSSEECTTT
T ss_pred             CcccCCCCCcch-HHHHHHH-----HHHHHhcCC
Confidence            357999999999 5666554     567999887

>d1rutx1 g.39.1.3 (X:19-48) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: LIM only 4 (Lmo4)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.71  E-value=7.6e-06  Score=37.56  Aligned_cols=27  Identities=22%  Similarity=0.720  Sum_probs=21.3

Q ss_pred             ccccccccccCCCeEEEeccccCCCCCCcccCc
Q psy10674         15 CCYECDKKVQFENYTGKITQSQESEVLWHPQCF   47 (138)
Q Consensus        15 ~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf   47 (138)
                      .|++|+++|. ++++..+     .++.||..|+
T Consensus         4 ~CaGC~~~I~-DRflL~v-----~dr~WH~~CL   30 (30)
T d1rutx1           4 RCAGCGGKIA-DRFLLYA-----MDSYWHSRCL   30 (30)
T ss_dssp             BBTTTCCBCC-CSEEEEE-----TTEEECGGGC
T ss_pred             ccCCCCCccc-hhhhhcc-----chhhhhhhhC
Confidence            6999999999 5666655     4669999884

>d2cuqa2 g.39.1.3 (A:8-42) Four and a half LIM domains 3, FHL3 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains 3, FHL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=6.1e-06  Score=38.94  Aligned_cols=27  Identities=26%  Similarity=0.598  Sum_probs=21.8

Q ss_pred             cccccccccccCCCeEEEeccccCCCCCCcccCc
Q psy10674         14 FCCYECDKKVQFENYTGKITQSQESEVLWHPQCF   47 (138)
Q Consensus        14 ~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf   47 (138)
                      ..|..|+++|..+.+..       +++.||.+||
T Consensus         9 ~~C~~Ckk~It~GGvtY-------~dqpWHkeCF   35 (35)
T d2cuqa2           9 PRCARCSKTLTQGGVTY-------RDQPWHRECL   35 (35)
T ss_dssp             CCCTTTCCCCCSCCEES-------SSSEECTTTC
T ss_pred             HHHhhcCCccccCceee-------cCCcchhhhC
Confidence            46899999999766543       5779999998

>d1imla2 g.39.1.3 (A:29-76) Cysteine-rich (intestinal) protein, CRP, CRIP {Rat (Rattus rattus) [TaxId: 10117]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=97.68  E-value=5.1e-06  Score=42.26  Aligned_cols=27  Identities=22%  Similarity=0.396  Sum_probs=24.3

Q ss_pred             cccccccccCCCCeeecCCCCCccCCCC
Q psy10674        109 CCYECDKELCNQSYIPVTESRPGQDSPG  136 (138)
Q Consensus       109 ~C~~C~~~l~~~~f~~~~~~~~y~~~~~  136 (138)
                      +|..|++.|+.....+++ |+|||..|+
T Consensus         1 kC~~C~K~L~sg~~aeHd-g~pYC~k~C   27 (48)
T d1imla2           1 KCEKCGKTLTSGGHAEHE-GKPYCNHPC   27 (48)
T ss_dssp             BCTTTCCBCCTTTEEEET-TEEEETTTH
T ss_pred             CchhcCcCcCCCChhhcC-Ccccccccc
Confidence            589999999999999999 999997653

>d1x63a1 g.39.1.3 (A:8-44) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 1, FHL-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=1.6e-05  Score=38.45  Aligned_cols=30  Identities=23%  Similarity=0.538  Sum_probs=24.1

Q ss_pred             CcccccccccccCCCeEEEeccccCCCCCCcccCc
Q psy10674         13 HFCCYECDKKVQFENYTGKITQSQESEVLWHPQCF   47 (138)
Q Consensus        13 ~~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf   47 (138)
                      ..+|..|+++|.++...+..     ++..||..||
T Consensus         8 a~~C~~C~k~I~~G~k~vey-----kg~~WHe~CF   37 (37)
T d1x63a1           8 SPKCKGCFKAIVAGDQNVEY-----KGTVWHKDCF   37 (37)
T ss_dssp             SCBCSSSCCBCCSSSCEEEC-----SSCEEETTTC
T ss_pred             CcccccCCCccCCCCeEeEe-----CCccchhccC
Confidence            35799999999987765543     6789999998

>d1x64a2 g.39.1.3 (A:53-83) PDZ and LIM domain protein 3, PDLIM3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: PDZ and LIM domain protein 3, PDLIM3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.58  E-value=5.1e-05  Score=34.28  Aligned_cols=29  Identities=31%  Similarity=0.691  Sum_probs=25.9

Q ss_pred             ccccCCccccCCceeeeCCeeecHHHHHh
Q psy10674         48 VCSTCDELLVDLMYFHYKGNVYCLRDYAT   76 (138)
Q Consensus        48 ~C~~C~~~l~~~~~~~~~~~~yC~~c~~~   76 (138)
                      .|+.|+..|..+.+|..++++||+.+...
T Consensus         1 vC~dCg~NLKqrG~Ffv~~~lyCE~HAr~   29 (31)
T d1x64a2           1 VCADCNLNLKQKGYFFVEGELYCETHARA   29 (31)
T ss_dssp             CCSSSCCCTTTSCCEEETTEEECHHHHHH
T ss_pred             CccccccChhhcceEEeccEEeehhhhhc
Confidence            48999999999999999999999998654

>d1a7ia2 g.39.1.3 (A:36-67) Cysteine-rich (intestinal) protein, CRP, CRIP {Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]

Probab=97.54  E-value=3.5e-05  Score=35.03  Aligned_cols=31  Identities=23%  Similarity=0.405  Sum_probs=27.3

Q ss_pred             cccCCccccCCceeeeCCeeecHHHHHhhcC
Q psy10674         49 CSTCDELLVDLMYFHYKGNVYCLRDYATMLD   79 (138)
Q Consensus        49 C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~   79 (138)
                      |..|.+.|.......+++.+||+.||-+.+|
T Consensus         2 C~~C~K~LdStTva~h~~eiYCKsCygkkyg   32 (32)
T d1a7ia2           2 CMVCRKNLDSTTVAIHDAEVYCKSCYGKKYG   32 (32)
T ss_dssp             CSSSCCEECSSCCEEETTEEECSHHHHHHCC
T ss_pred             chhhhhccCcceeeeecceEEehhhccccCC
Confidence            7789999988888899999999999987763

>d2dj7a2 g.39.1.3 (A:8-43) Actin-binding LIM protein 3, abLIM-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Actin-binding LIM protein 3, abLIM-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=1.6e-05  Score=37.40  Aligned_cols=28  Identities=21%  Similarity=0.617  Sum_probs=23.5

Q ss_pred             cccccccccccCCCeEEEeccccCCCCCCcccCc
Q psy10674         14 FCCYECDKKVQFENYTGKITQSQESEVLWHPQCF   47 (138)
Q Consensus        14 ~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf   47 (138)
                      -.|+.|++.|..+...+.++      +.||.+||
T Consensus         9 ~~CagCg~eik~gQaL~ALd------kqWH~~CF   36 (36)
T d2dj7a2           9 SHCAGCKEEIKHGQSLLALD------KQWHVSCF   36 (36)
T ss_dssp             SCCTTTCCCCSSSCCEEETT------EEECTTTC
T ss_pred             ccccccchhhhCCceeeeee------cceeeeeC
Confidence            46999999999888877754      49999998

>d1ibia1 g.39.1.3 (A:117-144) Cysteine-rich (intestinal) protein, CRP, CRIP {Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]

Probab=97.51  E-value=1.7e-05  Score=35.07  Aligned_cols=27  Identities=19%  Similarity=0.605  Sum_probs=23.6

Q ss_pred             CcccccCcccccCcEEEeCCCccccCC
Q psy10674         81 PRCHACDELIFVNEYTLAENKTFHVKH  107 (138)
Q Consensus        81 ~~C~~C~~~I~~~~~~~~~~~~~H~~C  107 (138)
                      ++|++|++.+...+-+.-.|+.||..|
T Consensus         2 d~CpRC~~~VyaAEkviGaG~~WHk~C   28 (28)
T d1ibia1           2 EKCSRCGDSVYAAEKVIGAGKPWHKNC   28 (28)
T ss_dssp             EECTTTSSEESSSSCEESSSSEECSSC
T ss_pred             CcCcccchhHHHHHHHhcCCCccccCC
Confidence            589999999998887768899999886

>d2dj7a1 g.39.1.3 (A:44-74) Actin-binding LIM protein 3, abLIM-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Actin-binding LIM protein 3, abLIM-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.50  E-value=1.7e-05  Score=36.21  Aligned_cols=24  Identities=29%  Similarity=0.488  Sum_probs=20.6

Q ss_pred             cccccccccCCCCeeecCCCCCccCC
Q psy10674        109 CCYECDKELCNQSYIPVTESRPGQDS  134 (138)
Q Consensus       109 ~C~~C~~~l~~~~f~~~~~~~~y~~~  134 (138)
                      +|..|+++|.++ |+.+| |.|||..
T Consensus         1 kC~~C~~vL~gE-Ym~kd-G~PyCe~   24 (31)
T d2dj7a1           1 KCQTCSVILTGE-YISKD-GVPYCES   24 (31)
T ss_dssp             BCSSSCCBCSSC-CEEET-TEEECTT
T ss_pred             CccccCccccce-eecCC-CCcccHH
Confidence            589999999874 88888 9999964

>d2dloa2 g.39.1.3 (A:43-75) Thyroid receptor interacting protein 6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Thyroid receptor interacting protein 6, TRIP6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=4e-05  Score=35.67  Aligned_cols=25  Identities=16%  Similarity=0.206  Sum_probs=23.0

Q ss_pred             cccccccccCCCCeeecCCCCCccC
Q psy10674        109 CCYECDKELCNQSYIPVTESRPGQD  133 (138)
Q Consensus       109 ~C~~C~~~l~~~~f~~~~~~~~y~~  133 (138)
                      +|..|++.|.|.+|.+..+|++||-
T Consensus         1 tCvvC~~~LDGvPFtvD~~n~i~Cv   25 (33)
T d2dloa2           1 TCVVCHRGLDGIPFTVDATSQIHCI   25 (33)
T ss_dssp             BCSSSCCBCTTSCEECCTTCCCEEH
T ss_pred             CeeEcCcccCCCcEEEcCCCCEeeh
Confidence            5889999999999999999999984

>d2dloa2 g.39.1.3 (A:43-75) Thyroid receptor interacting protein 6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Thyroid receptor interacting protein 6, TRIP6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=8.2e-05  Score=34.58  Aligned_cols=31  Identities=16%  Similarity=0.484  Sum_probs=27.3

Q ss_pred             ccccCCccccCCceee-eCCeeecHHHHHhhc
Q psy10674         48 VCSTCDELLVDLMYFH-YKGNVYCLRDYATML   78 (138)
Q Consensus        48 ~C~~C~~~l~~~~~~~-~~~~~yC~~c~~~~~   78 (138)
                      +|..|++.|.+.+|.. .++++||-.+|.+++
T Consensus         1 tCvvC~~~LDGvPFtvD~~n~i~Cv~DyHrkf   32 (33)
T d2dloa2           1 TCVVCHRGLDGIPFTVDATSQIHCIEDFHRKF   32 (33)
T ss_dssp             BCSSSCCBCTTSCEECCTTCCCEEHHHHHHHT
T ss_pred             CeeEcCcccCCCcEEEcCCCCEeehhhhhhhc
Confidence            5889999999888876 788999999999876

>d1u5sb2 g.39.1.3 (B:103-137) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Pinch (particularly interesting new Cys-His) protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=3.4e-05  Score=35.74  Aligned_cols=25  Identities=16%  Similarity=0.345  Sum_probs=23.4

Q ss_pred             ccccccccccCCCCeeecCCCCCccC
Q psy10674        108 FCCYECDKELCNQSYIPVTESRPGQD  133 (138)
Q Consensus       108 F~C~~C~~~l~~~~f~~~~~~~~y~~  133 (138)
                      |+|+.|.+|+-|.+.++++ |.+||.
T Consensus         1 FvCA~CekPF~G~rhyE~~-g~ayCe   25 (35)
T d1u5sb2           1 FVCAKCEKPFLGHRHYERK-GLAYCE   25 (35)
T ss_dssp             CBCTTTCCBCSSSCCEEET-TEEECH
T ss_pred             CcccccCCccCCchhhhhc-CchHHH
Confidence            7899999999999999999 999984

>d2cura1 g.39.1.3 (A:33-63) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 1, FHL-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=5.5e-05  Score=34.17  Aligned_cols=24  Identities=25%  Similarity=0.443  Sum_probs=21.8

Q ss_pred             cccccccccCCCCeeecCCCCCccC
Q psy10674        109 CCYECDKELCNQSYIPVTESRPGQD  133 (138)
Q Consensus       109 ~C~~C~~~l~~~~f~~~~~~~~y~~  133 (138)
                      .|..|.++|+|.+|...+ +|.||.
T Consensus         1 vC~~C~K~Lag~rFTa~e-Dq~yCV   24 (31)
T d2cura1           1 VCVTCSKKLAGQRFTAVE-DQYYCV   24 (31)
T ss_dssp             BCTTTCCBCTTSCEEECS-SCEEEH
T ss_pred             CcccccchhcCceeEEec-ceEEEe
Confidence            488999999999999999 999984

>d2cupa3 g.39.1.3 (A:8-34) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 1, FHL-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=6.9e-05  Score=32.56  Aligned_cols=27  Identities=30%  Similarity=0.797  Sum_probs=19.9

Q ss_pred             cccccccccCCCeEEEeccccCCCCCCcccCc
Q psy10674         16 CYECDKKVQFENYTGKITQSQESEVLWHPQCF   47 (138)
Q Consensus        16 C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf   47 (138)
                      |..|++||..+...+.-     .++.||..||
T Consensus         1 c~ecrkpigad~ke~h~-----knr~wh~~cf   27 (27)
T d2cupa3           1 CVECRKPIGADSKEVHY-----KNRFWHDTCF   27 (27)
T ss_dssp             CSSSCCBCCSSSCEEEE-----TTEEEETTTC
T ss_pred             CccccCCcCcchHHhhc-----cccccccccC
Confidence            78899999855444332     4779999997

>d1zfoa_ g.39.1.4 (A:) LASP-1 {Pig (Sus scrofa) [TaxId: 9823]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LASP-1
domain: LASP-1
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.24  E-value=2.5e-05  Score=35.16  Aligned_cols=28  Identities=29%  Similarity=0.651  Sum_probs=23.1

Q ss_pred             cccccccccccCCCeEEEeccccCCCCCCcccCc
Q psy10674         14 FCCYECDKKVQFENYTGKITQSQESEVLWHPQCF   47 (138)
Q Consensus        14 ~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf   47 (138)
                      +.|++|++.+.+.+.+..+      ++.||..||
T Consensus         3 ~~CaRC~k~VYp~Ekl~Cl------Dk~WHK~CF   30 (30)
T d1zfoa_           3 PNCARCGKIVYPTEKVNCL------DKFWHKACF   30 (30)
T ss_dssp             CBCSSSCSBCCGGGCCCSS------SSCCCGGGC
T ss_pred             CcccccCCccccHHHhhhh------HHHHhhccC
Confidence            6799999999988776554      569999998

>d1wiga1 g.39.1.3 (A:1-32) Actin-binding LIM protein 2, abLIM2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Actin-binding LIM protein 2, abLIM2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=6.8e-05  Score=33.87  Aligned_cols=27  Identities=22%  Similarity=0.411  Sum_probs=22.7

Q ss_pred             CCcccccCcccccCcEEEeCCCccccCC
Q psy10674         80 IPRCHACDELIFVNEYTLAENKTFHVKH  107 (138)
Q Consensus        80 ~~~C~~C~~~I~~~~~~~~~~~~~H~~C  107 (138)
                      +.-|..|.+.|.+ .++.|.++.|||.|
T Consensus         5 ssgC~~C~~~ItG-kVLEAG~khYHP~C   31 (32)
T d1wiga1           5 SSGCDSCEKYITG-RVLEAGEKHYHPSC   31 (32)
T ss_dssp             CCSCSSSCCCCSS-CCBCCSSCCBCTTT
T ss_pred             cchhhhhhhhhhh-hhhhccccccCCCC
Confidence            4579999999966 45669999999987

>d1x62a1 g.39.1.3 (A:43-73) PDZ and LIM domain protein 1 Elfin {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: PDZ and LIM domain protein 1 Elfin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=5.5e-05  Score=34.24  Aligned_cols=29  Identities=24%  Similarity=0.551  Sum_probs=25.6

Q ss_pred             ccccCCccccCCceeeeCCeeecHHHHHh
Q psy10674         48 VCSTCDELLVDLMYFHYKGNVYCLRDYAT   76 (138)
Q Consensus        48 ~C~~C~~~l~~~~~~~~~~~~yC~~c~~~   76 (138)
                      .|+.|+..|..+.+|..++++||+.+...
T Consensus         1 vC~dCg~NLKqrG~Ffve~~lyCE~HAr~   29 (31)
T d1x62a1           1 VCTDCGTNLKQKGHFFVEDQIYCEKHARE   29 (31)
T ss_dssp             SCSSSCCCHHHHCCEESSSCEECHHHHHH
T ss_pred             CccccccChhhcceEEeccEEehhhhhhh
Confidence            48999999988889999999999998754

>d2cupa3 g.39.1.3 (A:8-34) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 1, FHL-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=7.6e-05  Score=32.44  Aligned_cols=26  Identities=23%  Similarity=0.413  Sum_probs=20.2

Q ss_pred             ccccCcccccCc-EEEeCCCccccCCc
Q psy10674         83 CHACDELIFVNE-YTLAENKTFHVKHF  108 (138)
Q Consensus        83 C~~C~~~I~~~~-~~~~~~~~~H~~CF  108 (138)
                      |.-|.+||.... -+...++.||..||
T Consensus         1 c~ecrkpigad~ke~h~knr~wh~~cf   27 (27)
T d2cupa3           1 CVECRKPIGADSKEVHYKNRFWHDTCF   27 (27)
T ss_dssp             CSSSCCBCCSSSCEEEETTEEEETTTC
T ss_pred             CccccCCcCcchHHhhccccccccccC
Confidence            678999996432 34488999999998

>d1u5sb1 g.39.1.3 (B:72-102) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Pinch (particularly interesting new Cys-His) protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=3e-05  Score=35.52  Aligned_cols=28  Identities=14%  Similarity=0.350  Sum_probs=21.6

Q ss_pred             CCcccccccccccCCCeEEEeccccCCCCCCcccC
Q psy10674         12 KHFCCYECDKKVQFENYTGKITQSQESEVLWHPQC   46 (138)
Q Consensus        12 ~~~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~C   46 (138)
                      .-++|+.|++||. ++.+..      +++.||+++
T Consensus         4 g~p~C~~C~~PI~-~~~vtA------lgk~WHpEH   31 (31)
T d1u5sb1           4 GVPICGACRRPIE-GRVVNA------MGKQWHVEH   31 (31)
T ss_dssp             CCCEETTTTEECC-SCEECC------TTSBEETTT
T ss_pred             CCcchhhcCCchh-hhHhhh------hccccCCCC
Confidence            3578999999999 566544      577999975

>d1x63a2 g.39.1.3 (A:45-76) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 1, FHL-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=0.00037  Score=31.10  Aligned_cols=31  Identities=23%  Similarity=0.552  Sum_probs=27.5

Q ss_pred             ccccCCccccCCceeeeCCeeecHHHHHhhc
Q psy10674         48 VCSTCDELLVDLMYFHYKGNVYCLRDYATML   78 (138)
Q Consensus        48 ~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~   78 (138)
                      +|+.|+..+....|+.++..+||-.|++..|
T Consensus         1 tcs~ckq~igsgsffpkg~d~ycvtche~kf   31 (32)
T d1x63a2           1 TCSNCKQVIGTGSFFPKGEDFYCVTCHETKF   31 (32)
T ss_dssp             CCSSSCCCCTTSCEEEETTEEEEHHHHHHHT
T ss_pred             CcchhhhhcccccccCCCCcEEEEEeecccc
Confidence            5889999998888999999999999988765

>d2dloa1 g.39.1.3 (A:8-42) Thyroid receptor interacting protein 6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Thyroid receptor interacting protein 6, TRIP6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.12  E-value=0.00013  Score=34.37  Aligned_cols=32  Identities=19%  Similarity=0.501  Sum_probs=23.2

Q ss_pred             cCcCCcccccccccccCCCeEEEeccccCCCCCCcccCc
Q psy10674          9 FHVKHFCCYECDKKVQFENYTGKITQSQESEVLWHPQCF   47 (138)
Q Consensus         9 ~h~~~~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf   47 (138)
                      |...--+|..|+++|. +..+..      .|+.|||.||
T Consensus         4 y~~tlEkC~~C~~~I~-driLrA------~Gk~yHP~CF   35 (35)
T d2dloa1           4 YVATLEKCATCSQPIL-DRILRA------MGKAYHPGCF   35 (35)
T ss_dssp             CCSSCCBCTTTCCBCC-SCCEEE------TTEEECTTTC
T ss_pred             HHHHHHHHHHhchHHH-HHHHHH------hCCCCCCCCC
Confidence            3344458999999998 444444      4669999998

>d2cora2 g.39.1.3 (A:8-42) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Pinch (particularly interesting new Cys-His) protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.06  E-value=0.00014  Score=33.86  Aligned_cols=29  Identities=24%  Similarity=0.493  Sum_probs=23.9

Q ss_pred             CCCcccccCcccccCcEEEeCCCccccCCc
Q psy10674         79 DIPRCHACDELIFVNEYTLAENKTFHVKHF  108 (138)
Q Consensus        79 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF  108 (138)
                      |...|.+|...|.+..++ +.|..||+.+|
T Consensus         7 Gk~vC~KCh~iIdd~pL~-Fr~d~YHp~HF   35 (35)
T d2cora2           7 GKYICQKCHAIIDEQPLI-FKNDPYHPDHF   35 (35)
T ss_dssp             CCCBCTTTCCBCCSCCCC-CSSSCCCTTTS
T ss_pred             hhHHHHHHHhhhhcCcce-ecCCCCCCCCC
Confidence            346899999999665554 99999999987

>d2cu8a1 g.39.1.3 (A:8-37) Cysteine-rich (intestinal) protein, CRP, CRIP {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.06  E-value=0.00013  Score=33.19  Aligned_cols=29  Identities=31%  Similarity=0.661  Sum_probs=23.9

Q ss_pred             CcccccccccccCCCeEEEeccccCCCCCCcccCc
Q psy10674         13 HFCCYECDKKVQFENYTGKITQSQESEVLWHPQCF   47 (138)
Q Consensus        13 ~~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf   47 (138)
                      ..+|.+|++++...+.+..+      |..||..|+
T Consensus         2 ~~~CprC~K~VYfaEk~~~l------gk~WHk~Cl   30 (30)
T d2cu8a1           2 ASKCPKCDKTVYFAEKVSSL------GKDWHKFCL   30 (30)
T ss_dssp             CCBCTTTCCBCCTTTEEEET------TEEEETTTC
T ss_pred             CCcCCCCCCceeeHHhhccC------CcccccccC
Confidence            35799999999999888775      448999885

>d1rutx2 g.39.1.3 (X:49-82) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: LIM only 4 (Lmo4)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.05  E-value=0.00034  Score=32.27  Aligned_cols=32  Identities=25%  Similarity=0.659  Sum_probs=27.2

Q ss_pred             ccccCCccc--cCCceeeeCCeeecHHHHHhhcC
Q psy10674         48 VCSTCDELL--VDLMYFHYKGNVYCLRDYATMLD   79 (138)
Q Consensus        48 ~C~~C~~~l--~~~~~~~~~~~~yC~~c~~~~~~   79 (138)
                      +|+-|+..|  .+...|.+.+.++|+.+|.++||
T Consensus         1 KCscC~~~LgeiG~s~ytk~~mILCk~DY~rlFG   34 (34)
T d1rutx2           1 KCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG   34 (34)
T ss_dssp             BCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHS
T ss_pred             CCcchhcChhhccchheecCCEEEEchhHHHhcC
Confidence            477888888  45778999999999999999874

>d1a7ia1 g.39.1.3 (A:8-35) Cysteine-rich (intestinal) protein, CRP, CRIP {Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]

Probab=97.05  E-value=0.00019  Score=31.33  Aligned_cols=27  Identities=26%  Similarity=0.652  Sum_probs=24.2

Q ss_pred             cccccCcccccCcEEEeCCCccccCCc
Q psy10674         82 RCHACDELIFVNEYTLAENKTFHVKHF  108 (138)
Q Consensus        82 ~C~~C~~~I~~~~~~~~~~~~~H~~CF  108 (138)
                      +|..|.+.+.-.+-+...|+.||..||
T Consensus         2 kcg~c~ktvy~aeevqc~grsfhk~cf   28 (28)
T d1a7ia1           2 KCGACGRTVYHAEEVQCDGRSFHRCCF   28 (28)
T ss_dssp             BCSSSCCBCSSTTEEEETTEEEESSSE
T ss_pred             ccccccceEeeeeeeeecCceeccccC
Confidence            789999999887777799999999998

>d1x4la1 g.39.1.3 (A:8-36) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 2, FHL2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.04  E-value=0.0001  Score=32.92  Aligned_cols=26  Identities=31%  Similarity=0.760  Sum_probs=19.1

Q ss_pred             cccccccccC---CCeEEEeccccCCCCCCcccCc
Q psy10674         16 CYECDKKVQF---ENYTGKITQSQESEVLWHPQCF   47 (138)
Q Consensus        16 C~~C~~~i~~---~~~~~~~~~~~~~~~~~H~~Cf   47 (138)
                      |+.|.+||..   ..++...      ++.||.+||
T Consensus         1 C~~C~kPItg~gg~kyisFE------~R~WH~~CF   29 (29)
T d1x4la1           1 CAGCTNPISGLGGTKYISFE------ERQWHNDCF   29 (29)
T ss_dssp             BTTTTBCCCCSSSCSCEECS------SCEECTTTC
T ss_pred             CCccCCcccccCCceEEEee------cccccccCC
Confidence            7889999863   4455554      559999998

>d1ibia2 g.39.1.3 (A:145-175) Cysteine-rich (intestinal) protein, CRP, CRIP {Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]

Probab=96.99  E-value=7.8e-05  Score=33.32  Aligned_cols=25  Identities=20%  Similarity=0.309  Sum_probs=22.5

Q ss_pred             ccccccccccCCCCeeecCCCCCccC
Q psy10674        108 FCCYECDKELCNQSYIPVTESRPGQD  133 (138)
Q Consensus       108 F~C~~C~~~l~~~~f~~~~~~~~y~~  133 (138)
                      |+|+.|++.|.+..-..++ |.+||.
T Consensus         1 frca~cgk~lestt~adkd-geiyck   25 (31)
T d1ibia2           1 FRCAKCGKSLESTTLTEKE-GEIYCK   25 (31)
T ss_dssp             EECSSSCCEECSSCSEEET-TEEECH
T ss_pred             CccccccCccccceeeccC-CcEEEe
Confidence            7899999999988888888 999985

>d1b8ta1 g.39.1.3 (A:1-35) Cysteine-rich (intestinal) protein, CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.96  E-value=0.00014  Score=33.41  Aligned_cols=28  Identities=25%  Similarity=0.657  Sum_probs=24.9

Q ss_pred             CcccccCcccccCcEEEeCCCccccCCc
Q psy10674         81 PRCHACDELIFVNEYTLAENKTFHVKHF  108 (138)
Q Consensus        81 ~~C~~C~~~I~~~~~~~~~~~~~H~~CF  108 (138)
                      .+|..|.+.+.-.+-+...|+.||..||
T Consensus         8 ~kcg~c~ktvy~aeevqc~g~sfhk~cf   35 (35)
T d1b8ta1           8 KKCGVCQKAVYFAEEVQCEGSSFHKSCF   35 (35)
T ss_dssp             EECTTTCCEECSSCCEEETTEEECTTTC
T ss_pred             ceeccccceEeeeeeeeecCcccccccC
Confidence            5999999999877767799999999998

>d2d8ya2 g.39.1.3 (A:44-85) Eplin, LIMA1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Eplin, LIMA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.88  E-value=0.00022  Score=35.20  Aligned_cols=24  Identities=21%  Similarity=0.383  Sum_probs=22.1

Q ss_pred             cccccccccCCCCeeecCCCCCccC
Q psy10674        109 CCYECDKELCNQSYIPVTESRPGQD  133 (138)
Q Consensus       109 ~C~~C~~~l~~~~f~~~~~~~~y~~  133 (138)
                      +|..|++.|+-++|...+ |++||.
T Consensus         1 rC~~C~~~Ls~~~yas~~-G~lYCk   24 (42)
T d2d8ya2           1 RCSYCNNKLSLGTYASLH-GRIYCK   24 (42)
T ss_dssp             BCTTTCCBCCTTTCCCSS-SCCCCH
T ss_pred             CcCcCCCCccCCcchhhC-CEeccH
Confidence            699999999988999998 999994

>d1b8ta3 g.39.1.3 (A:101-143) Cysteine-rich (intestinal) protein, CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.85  E-value=0.00017  Score=36.03  Aligned_cols=29  Identities=24%  Similarity=0.464  Sum_probs=24.3

Q ss_pred             CcccccccccccCCCeEEEeccccCCCCCCcccCc
Q psy10674         13 HFCCYECDKKVQFENYTGKITQSQESEVLWHPQCF   47 (138)
Q Consensus        13 ~~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf   47 (138)
                      ..+|..|++.+...|.+..+      +..||..||
T Consensus        15 ~~kC~~C~k~VY~~E~~~~~------g~~~Hk~CF   43 (43)
T d1b8ta3          15 SDGCPRCGQAVYAAEKVIGA------GKSWHKSCF   43 (43)
T ss_dssp             CEECTTTSCEECSSSCEEET------TEEECTTTC
T ss_pred             CCcCccCCCEeeHHHHhhcC------CCccccCCC
Confidence            47899999999988887664      559999998

>d1x4ka2 g.39.1.3 (A:8-34) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 2, FHL2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.79  E-value=0.00031  Score=30.58  Aligned_cols=27  Identities=30%  Similarity=0.696  Sum_probs=20.4

Q ss_pred             cccccccccCCCeEEEeccccCCCCCCcccCc
Q psy10674         16 CYECDKKVQFENYTGKITQSQESEVLWHPQCF   47 (138)
Q Consensus        16 C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf   47 (138)
                      |..|.+.|.++...+.-     .|..||..||
T Consensus         1 C~~C~ktiMPGsrKme~-----kG~~WHEtCF   27 (27)
T d1x4ka2           1 CQECKKTIMPGTRKMEY-----KGSSWHETCF   27 (27)
T ss_dssp             BSSSCCCCCSSSCEEEE-----TTEEEETTTT
T ss_pred             CccccccccCCceeecc-----cCCccccccC
Confidence            67899999887654433     4669999997

>d2d8ya1 g.39.1.3 (A:9-43) Eplin, LIMA1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Eplin, LIMA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.73  E-value=0.00034  Score=33.21  Aligned_cols=31  Identities=26%  Similarity=0.404  Sum_probs=25.0

Q ss_pred             cCCcccccccccccCCCeEEEeccccCCCCCCcccCc
Q psy10674         11 VKHFCCYECDKKVQFENYTGKITQSQESEVLWHPQCF   47 (138)
Q Consensus        11 ~~~~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf   47 (138)
                      +..-+|..|++.+..-+.+...      |..||..||
T Consensus         5 p~~~kC~~C~K~VY~~E~~~a~------g~~~Hk~CF   35 (35)
T d2d8ya1           5 PARETCVECQKTVYPMERLLAN------QQVFHISCF   35 (35)
T ss_dssp             SSSCBCTTTCCBCCTTSEEECS------SSEEETTTC
T ss_pred             CCCcccccCCCEEeeeeeEecC------CeehhhccC
Confidence            3456899999999988877654      569999998

>d2dara1 g.39.1.3 (A:53-84) PDZ and LIM domain protein 5, Enigma {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: PDZ and LIM domain protein 5, Enigma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.71  E-value=0.00045  Score=31.55  Aligned_cols=24  Identities=8%  Similarity=0.289  Sum_probs=21.7

Q ss_pred             cccccccccCCCCeeecCCCCCccC
Q psy10674        109 CCYECDKELCNQSYIPVTESRPGQD  133 (138)
Q Consensus       109 ~C~~C~~~l~~~~f~~~~~~~~y~~  133 (138)
                      .|+.|+++|....|++.+ |+.||.
T Consensus         1 nCa~C~~sL~d~gFVEE~-g~lYCe   24 (32)
T d2dara1           1 NCAHCKNTMAYIGFVEEK-GALYCE   24 (32)
T ss_dssp             BCSSSCCBCSSSCBEESS-SCEECH
T ss_pred             CcccccccHhhcceeeec-CcEeHH
Confidence            488999999999999998 999984

>d1x68a1 g.39.1.3 (A:8-36) Four and a half LIM domains protein 5, FHL-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 5, FHL-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.69  E-value=0.00027  Score=31.43  Aligned_cols=26  Identities=27%  Similarity=0.796  Sum_probs=18.7

Q ss_pred             cccccccccC---CCeEEEeccccCCCCCCcccCc
Q psy10674         16 CYECDKKVQF---ENYTGKITQSQESEVLWHPQCF   47 (138)
Q Consensus        16 C~~C~~~i~~---~~~~~~~~~~~~~~~~~H~~Cf   47 (138)
                      |..|.+||..   ..++...      ++.||.+||
T Consensus         1 C~~C~kPItg~gG~k~isFe------dR~WH~~CF   29 (29)
T d1x68a1           1 CVACSKPISGLTGAKFICFQ------DSQWHSECF   29 (29)
T ss_dssp             CTTTCCCCCTTTTCCEEEET------TEEEEGGGC
T ss_pred             CccccccccccCCceEEEee------hhhcccccC
Confidence            6788999863   4456554      448999997

>d1wyha2 g.39.1.3 (A:8-34) Four and a half LIM domains 3, FHL3 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains 3, FHL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.61  E-value=0.00047  Score=29.91  Aligned_cols=27  Identities=26%  Similarity=0.615  Sum_probs=20.2

Q ss_pred             cccccccccCCCeEEEeccccCCCCCCcccCc
Q psy10674         16 CYECDKKVQFENYTGKITQSQESEVLWHPQCF   47 (138)
Q Consensus        16 C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf   47 (138)
                      |..|.+.|.++...+.     +.|..||..||
T Consensus         1 C~~C~ktiMPGsrKme-----y~G~sWHE~CF   27 (27)
T d1wyha2           1 CSACGETVMPGSRKLE-----YGGQTWHEHCF   27 (27)
T ss_dssp             CSSSCCBCCSSSCEEC-----STTCCEETTTC
T ss_pred             CccccceecCCccccc-----ccCcccccccC
Confidence            6788999987765432     35779999998

>d1b8ta4 g.39.1.3 (A:144-192) Cysteine-rich (intestinal) protein, CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.55  E-value=0.00037  Score=35.54  Aligned_cols=25  Identities=16%  Similarity=0.218  Sum_probs=22.1

Q ss_pred             cccccccccCCCCeeecCCCCCccCC
Q psy10674        109 CCYECDKELCNQSYIPVTESRPGQDS  134 (138)
Q Consensus       109 ~C~~C~~~l~~~~f~~~~~~~~y~~~  134 (138)
                      +|..|++.|++....+.| |+|||.+
T Consensus         1 KC~~C~k~Lds~t~~ehd-g~~YCk~   25 (49)
T d1b8ta4           1 RCAKCGKSLESTTLADKD-GEIYCKG   25 (49)
T ss_dssp             BCTTTCCBCCSSSEEEET-TEEEEHH
T ss_pred             ChhhcCCccCCCcccccC-Ccccchh
Confidence            589999999988999988 9999953

>d2co8a2 g.39.1.3 (A:8-43) Nedd9 interacting protein with calponin homology, NICAL (MICAL1) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Nedd9 interacting protein with calponin homology, NICAL (MICAL1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.53  E-value=0.00035  Score=33.31  Aligned_cols=29  Identities=17%  Similarity=0.363  Sum_probs=23.1

Q ss_pred             CcccccccccccCCCeEEEeccccCCCCCCcccCc
Q psy10674         13 HFCCYECDKKVQFENYTGKITQSQESEVLWHPQCF   47 (138)
Q Consensus        13 ~~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf   47 (138)
                      .-+|..|++.+.+-+.+..      .+..||..||
T Consensus         8 ~~~C~~C~K~VY~~Erl~a------~g~~yHk~CF   36 (36)
T d2co8a2           8 GDLCALCGEHLYVLERLCV------NGHFFHRSCF   36 (36)
T ss_dssp             SCBCSSSCCBCCTTTBCCB------TTBCCBTTTC
T ss_pred             CCcccccCCEEeeeeEEEe------cCcEeccccC
Confidence            4579999999987766654      4669999998

>d1x6aa2 g.39.1.3 (A:42-75) Lim domain kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Lim domain kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.36  E-value=0.001  Score=30.60  Aligned_cols=26  Identities=19%  Similarity=0.381  Sum_probs=23.4

Q ss_pred             ccccccccccC-CCCeeecCCCCCccC
Q psy10674        108 FCCYECDKELC-NQSYIPVTESRPGQD  133 (138)
Q Consensus       108 F~C~~C~~~l~-~~~f~~~~~~~~y~~  133 (138)
                      |.|..|+.-|+ +++|.+.+..+.||-
T Consensus         1 F~C~~C~~fIgdgdsyaLVerskLYCG   27 (34)
T d1x6aa2           1 FACMSCKVIIEDGDAYALVQHATLYCG   27 (34)
T ss_dssp             CBCTTTCCBCCTTSCEEECSSSCEEEH
T ss_pred             CcccccccEEecCceEEEEeeceeeee
Confidence            78999999998 899999999999984

>d1x62a2 g.39.1.3 (A:8-42) PDZ and LIM domain protein 1 Elfin {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: PDZ and LIM domain protein 1 Elfin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.15  E-value=0.00091  Score=30.88  Aligned_cols=29  Identities=21%  Similarity=0.535  Sum_probs=22.3

Q ss_pred             CCcccccccccccCCCeEEEeccccCCCCCCcccCc
Q psy10674         12 KHFCCYECDKKVQFENYTGKITQSQESEVLWHPQCF   47 (138)
Q Consensus        12 ~~~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf   47 (138)
                      .-+.|.+|+..|. +.++-.      ++..+|++||
T Consensus         7 klp~CdkCg~GIV-G~~VK~------rDk~rHPeCf   35 (35)
T d1x62a2           7 KLPMCDKCGTGIV-GVFVKL------RDRHRHPECY   35 (35)
T ss_dssp             CCCCCSSSCCCCC-SSCEEC------SSCEECTTTT
T ss_pred             cCccccccCCCcE-eEEEEe------ccccCCCCCC
Confidence            3578999999998 555543      4669999997

>d2cupa2 g.39.1.3 (A:35-65) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 1, FHL-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.08  E-value=0.00023  Score=31.94  Aligned_cols=26  Identities=15%  Similarity=0.355  Sum_probs=22.7

Q ss_pred             cccccccccCCCCeeecCCCCCccCCC
Q psy10674        109 CCYECDKELCNQSYIPVTESRPGQDSP  135 (138)
Q Consensus       109 ~C~~C~~~l~~~~f~~~~~~~~y~~~~  135 (138)
                      +|..|-.+|..+.|+.++ ++++|.+.
T Consensus         1 RCaKC~hpLA~E~F~aKd-~kI~C~Kc   26 (31)
T d2cupa2           1 RCAKCLHPLANETFVAKD-NKILCNKC   26 (31)
T ss_dssp             CCSSSCCCTTSSCCEEET-TEEECHHH
T ss_pred             CchhhccccccCcccccC-CeEeeccc
Confidence            588899999999999999 99998754

>d1x61a1 g.39.1.3 (A:8-34) Thyroid receptor interacting protein 6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Thyroid receptor interacting protein 6, TRIP6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.96  E-value=0.0022  Score=27.19  Aligned_cols=26  Identities=31%  Similarity=0.606  Sum_probs=20.0

Q ss_pred             ccccCcccccC-cEEEeCCCccccCCc
Q psy10674         83 CHACDELIFVN-EYTLAENKTFHVKHF  108 (138)
Q Consensus        83 C~~C~~~I~~~-~~~~~~~~~~H~~CF  108 (138)
                      |.+|++.+.+. .-+.+.++.||..||
T Consensus         1 cggcgedvvgdgagvvaldrvfhvgcf   27 (27)
T d1x61a1           1 CGGCGEDVVGDGAGVVALDRVFHVGCF   27 (27)
T ss_dssp             CSSSCSCCCSSSCCEECSSSEECTTTC
T ss_pred             CCCcccccccCCcceEEEeeeEEeccC
Confidence            66788877643 345599999999998

>d2cupa2 g.39.1.3 (A:35-65) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 1, FHL-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.90  E-value=0.0052  Score=27.36  Aligned_cols=28  Identities=14%  Similarity=0.394  Sum_probs=24.0

Q ss_pred             ccccCCccccCCceeeeCCeeecHHHHH
Q psy10674         48 VCSTCDELLVDLMYFHYKGNVYCLRDYA   75 (138)
Q Consensus        48 ~C~~C~~~l~~~~~~~~~~~~yC~~c~~   75 (138)
                      +|..|-.||....|...|++++|..|-.
T Consensus         1 RCaKC~hpLA~E~F~aKd~kI~C~Kc~s   28 (31)
T d2cupa2           1 RCAKCLHPLANETFVAKDNKILCNKCTT   28 (31)
T ss_dssp             CCSSSCCCTTSSCCEEETTEEECHHHHT
T ss_pred             CchhhccccccCcccccCCeEeeccccc
Confidence            4788889998888999999999988753

>d1x61a2 g.39.1.3 (A:35-66) Thyroid receptor interacting protein 6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Thyroid receptor interacting protein 6, TRIP6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.84  E-value=0.0025  Score=28.63  Aligned_cols=25  Identities=24%  Similarity=0.484  Sum_probs=22.2

Q ss_pred             cccccccccCCCCeeecCCCCCccCC
Q psy10674        109 CCYECDKELCNQSYIPVTESRPGQDS  134 (138)
Q Consensus       109 ~C~~C~~~l~~~~f~~~~~~~~y~~~  134 (138)
                      .|..|+..|.|+.|+-.+ .+-||.+
T Consensus         1 vC~tC~~kLRGqpFYAve-kkayCE~   25 (32)
T d1x61a2           1 VCSTCRAQLRGQHFYAVE-RRAYCEG   25 (32)
T ss_dssp             BCSSSCCBCTTSCEEESS-SCEEEHH
T ss_pred             CeeEeCceecCCcceEee-ccccccc
Confidence            488999999999999999 9999853

>d1x64a1 g.39.1.3 (A:8-52) PDZ and LIM domain protein 3, PDLIM3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: PDZ and LIM domain protein 3, PDLIM3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.80  E-value=0.0015  Score=32.15  Aligned_cols=29  Identities=21%  Similarity=0.547  Sum_probs=22.4

Q ss_pred             CCcccccccccccCCCeEEEeccccCCCCCCcccCc
Q psy10674         12 KHFCCYECDKKVQFENYTGKITQSQESEVLWHPQCF   47 (138)
Q Consensus        12 ~~~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf   47 (138)
                      .-+.|.+|+..|. +-++-.      ++..+|++||
T Consensus        17 kLP~CdkCg~GIV-G~~VK~------rDK~rHPeCf   45 (45)
T d1x64a1          17 RMPLCDKCGSGIV-GAVVKA------RDKYRHPECF   45 (45)
T ss_dssp             SCCBCTTTCCBCC-SCCEES------SSCEECTTTC
T ss_pred             cCccccccCCCcE-EEEEEe------ccccCCCCCC
Confidence            3478999999998 555543      4669999998

>d1x6aa2 g.39.1.3 (A:42-75) Lim domain kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Lim domain kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.79  E-value=0.0054  Score=28.11  Aligned_cols=31  Identities=23%  Similarity=0.547  Sum_probs=23.7

Q ss_pred             cccccCCccccCC-ceee-eCCeeecHHHHHhh
Q psy10674         47 FVCSTCDELLVDL-MYFH-YKGNVYCLRDYATM   77 (138)
Q Consensus        47 f~C~~C~~~l~~~-~~~~-~~~~~yC~~c~~~~   77 (138)
                      |.|..|+.-+.+. .|.. +..++||..||.+.
T Consensus         1 F~C~~C~~fIgdgdsyaLVerskLYCG~Cy~~~   33 (34)
T d1x6aa2           1 FACMSCKVIIEDGDAYALVQHATLYCGKCHNEV   33 (34)
T ss_dssp             CBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHH
T ss_pred             CcccccccEEecCceEEEEeeceeeeecchhcc
Confidence            6789999988554 4543 67799999999764

>d2cora1 g.39.1.3 (A:43-73) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Pinch (particularly interesting new Cys-His) protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.77  E-value=0.0081  Score=26.71  Aligned_cols=29  Identities=31%  Similarity=0.577  Sum_probs=23.7

Q ss_pred             ccccCCccccCCceeeeCCeeecHHHHHhh
Q psy10674         48 VCSTCDELLVDLMYFHYKGNVYCLRDYATM   77 (138)
Q Consensus        48 ~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~   77 (138)
                      .|..|++.|.. ...+..|.+||-+|..++
T Consensus         1 nC~~Cgkelta-dArEl~geLyCLpChdKm   29 (31)
T d2cora1           1 NCANCGKELTA-DARELKGELYCLPCHDKM   29 (31)
T ss_dssp             BCSSSCCBCCT-TCEEETTEEECHHHHHTT
T ss_pred             Cccccccccch-hHHHhcCCEEEEeccccc
Confidence            47889999965 457789999999998775

>d1wyha1 g.39.1.3 (A:35-66) Four and a half LIM domains 3, FHL3 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains 3, FHL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.72  E-value=0.0017  Score=29.54  Aligned_cols=24  Identities=21%  Similarity=0.465  Sum_probs=21.0

Q ss_pred             ccccccccCCCCeeecCCCCCccCC
Q psy10674        110 CYECDKELCNQSYIPVTESRPGQDS  134 (138)
Q Consensus       110 C~~C~~~l~~~~f~~~~~~~~y~~~  134 (138)
                      |..|..||+..+|+.++ +..||.+
T Consensus         2 C~~C~qPIGtkSFip~~-~~~yCvp   25 (32)
T d1wyha1           2 CSGCEQPLGSRSFVPDK-GAHYCVP   25 (32)
T ss_dssp             CTTTCCBTTTSCEEEET-TEEEEHH
T ss_pred             cccccCcccccccccCC-CcEEEEe
Confidence            78899999999999999 8888864

>d2d8xa1 g.39.1.3 (A:33-64) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Pinch (particularly interesting new Cys-His) protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.71  E-value=0.0091  Score=26.79  Aligned_cols=29  Identities=24%  Similarity=0.529  Sum_probs=26.0

Q ss_pred             ccccCCccccCCceeeeCCeeecHHHHHh
Q psy10674         48 VCSTCDELLVDLMYFHYKGNVYCLRDYAT   76 (138)
Q Consensus        48 ~C~~C~~~l~~~~~~~~~~~~yC~~c~~~   76 (138)
                      +|..|...|.+..|....|+.+|..|..+
T Consensus         1 rC~~C~~~LAD~GFvKnagR~LCrpch~r   29 (32)
T d2d8xa1           1 RCDLCQEVLADIGFVKNAGRHLCRPCHNR   29 (32)
T ss_dssp             BCSSSCCBCSSSCCEEETTEEECHHHHHH
T ss_pred             CchHHHhHHHHhhhhhcccccccchhhhh
Confidence            58899999999899999999999999765

>d1x4ka1 g.39.1.3 (A:35-66) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 2, FHL2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.59  E-value=0.0021  Score=29.31  Aligned_cols=24  Identities=21%  Similarity=0.480  Sum_probs=21.1

Q ss_pred             ccccccccCCCCeeecCCCCCccCC
Q psy10674        110 CYECDKELCNQSYIPVTESRPGQDS  134 (138)
Q Consensus       110 C~~C~~~l~~~~f~~~~~~~~y~~~  134 (138)
                      |..|+.+|+..+|+.++ +..||.+
T Consensus         2 C~~C~qPIGtksfipk~-~~~yCvp   25 (32)
T d1x4ka1           2 CHRCQQPIGTKSFIPKD-NQNFCVP   25 (32)
T ss_dssp             CSSSCCCCCSSSEEEET-TEEEEHH
T ss_pred             cccccCcccccccccCC-CCceEee
Confidence            78899999999999999 8888864

>d1rutx4 g.39.1.3 (X:114-146) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: LIM only 4 (Lmo4)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.58  E-value=0.0054  Score=27.62  Aligned_cols=27  Identities=30%  Similarity=0.645  Sum_probs=21.4

Q ss_pred             ccccCCccc-cCCceeeeCCeeecHHHH
Q psy10674         48 VCSTCDELL-VDLMYFHYKGNVYCLRDY   74 (138)
Q Consensus        48 ~C~~C~~~l-~~~~~~~~~~~~yC~~c~   74 (138)
                      +|++|...| .+..|...+|.+||+.+.
T Consensus         1 tC~tC~n~LVPGDRFHyvNG~lfCE~D~   28 (33)
T d1rutx4           1 TCSTCRNRLVPGDRFHYINGSLFCEHDR   28 (33)
T ss_dssp             BCTTTCCBCCTTCEEEEETTEEEEGGGC
T ss_pred             CcccccccccCCceeEEecCEEEEecCC
Confidence            488898888 455777899999998763

>d1v6ga1 g.39.1.3 (A:1-41) Actin-binding LIM protein 2, abLIM2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Actin-binding LIM protein 2, abLIM2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.41  E-value=0.0028  Score=30.79  Aligned_cols=27  Identities=22%  Similarity=0.716  Sum_probs=21.7

Q ss_pred             CcccccccccccCCCeEEEeccccCCCCCCcccC
Q psy10674         13 HFCCYECDKKVQFENYTGKITQSQESEVLWHPQC   46 (138)
Q Consensus        13 ~~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~C   46 (138)
                      .-+|..|++-|. ++++.+.+      ..|||+|
T Consensus        15 G~~C~~C~~~It-G~V~~Ag~------~~yHP~C   41 (41)
T d1v6ga1          15 GTRCFSCDQFIE-GEVVSALG------KTYHPDC   41 (41)
T ss_dssp             CCBCTTTCCBCC-SCCEEETT------EEECTTT
T ss_pred             CcccccccCEee-eeeeEecC------cccCCCC
Confidence            457999999997 88887754      4899987

>d1ibia1 g.39.1.3 (A:117-144) Cysteine-rich (intestinal) protein, CRP, CRIP {Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]

Probab=95.33  E-value=0.0023  Score=28.00  Aligned_cols=26  Identities=23%  Similarity=0.515  Sum_probs=20.2

Q ss_pred             ccccccccccCCCeEEEeccccCCCCCCcccC
Q psy10674         15 CCYECDKKVQFENYTGKITQSQESEVLWHPQC   46 (138)
Q Consensus        15 ~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~C   46 (138)
                      +|.+|++.+...+.++-      -+..||..|
T Consensus         3 ~CpRC~~~VyaAEkviG------aG~~WHk~C   28 (28)
T d1ibia1           3 KCSRCGDSVYAAEKVIG------AGKPWHKNC   28 (28)
T ss_dssp             ECTTTSSEESSSSCEES------SSSEECSSC
T ss_pred             cCcccchhHHHHHHHhc------CCCccccCC
Confidence            58899999987777654      366999876

>d1g47a1 g.39.1.3 (A:1-35) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Pinch (particularly interesting new Cys-His) protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.04  E-value=0.0057  Score=28.23  Aligned_cols=27  Identities=15%  Similarity=0.327  Sum_probs=22.1

Q ss_pred             CcccccCcccccCc-EEEeCCCccccCC
Q psy10674         81 PRCHACDELIFVNE-YTLAENKTFHVKH  107 (138)
Q Consensus        81 ~~C~~C~~~I~~~~-~~~~~~~~~H~~C  107 (138)
                      -.|.+|+....+.+ ++...|..||+.|
T Consensus         8 ~~C~RC~~gF~p~EkiVNSnGEl~H~qC   35 (35)
T d1g47a1           8 ATCERCKGGFAPAEKIVNSNGELYHEQC   35 (35)
T ss_dssp             CBCSSSCCBCCSTTTCEEETTEEECTTT
T ss_pred             HHHHHHccCCCchHHhhcCCCccccccC
Confidence            48999999887765 6668999999876

>d1wiga2 g.39.1.3 (A:33-73) Actin-binding LIM protein 2, abLIM2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Actin-binding LIM protein 2, abLIM2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.96  E-value=0.0053  Score=29.40  Aligned_cols=27  Identities=19%  Similarity=0.345  Sum_probs=19.9

Q ss_pred             cccccCcccccCc-EEEeCCCccccCCc
Q psy10674         82 RCHACDELIFVNE-YTLAENKTFHVKHF  108 (138)
Q Consensus        82 ~C~~C~~~I~~~~-~~~~~~~~~H~~CF  108 (138)
                      .|++|++...+++ +-.-.+..|||.|-
T Consensus         1 ~C~rC~~mF~EGEEMYLQGs~IWHP~C~   28 (41)
T d1wiga2           1 LCVRCGQMFAEGEEMYLQGSSIWHPACR   28 (41)
T ss_dssp             CCSSSCCCCCSSCCCEEETTEEECTTHH
T ss_pred             CcchhhccccccceeeecCCceeCCccc
Confidence            4889999887765 33257788999864

>d1g47a1 g.39.1.3 (A:1-35) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Pinch (particularly interesting new Cys-His) protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.93  E-value=0.0062  Score=28.10  Aligned_cols=30  Identities=20%  Similarity=0.352  Sum_probs=23.9

Q ss_pred             CCcccccccccccCCCeEEEeccccCCCCCCcccC
Q psy10674         12 KHFCCYECDKKVQFENYTGKITQSQESEVLWHPQC   46 (138)
Q Consensus        12 ~~~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~C   46 (138)
                      ....|.+|+..+.+.+.++..     .|..||+.|
T Consensus         6 ~~~~C~RC~~gF~p~EkiVNS-----nGEl~H~qC   35 (35)
T d1g47a1           6 ASATCERCKGGFAPAEKIVNS-----NGELYHEQC   35 (35)
T ss_dssp             CCCBCSSSCCBCCSTTTCEEE-----TTEEECTTT
T ss_pred             HHHHHHHHccCCCchHHhhcC-----CCccccccC
Confidence            346799999999998888765     477999876

>d1b8ta2 g.39.1.3 (A:36-100) Cysteine-rich (intestinal) protein, CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=94.54  E-value=0.0057  Score=32.79  Aligned_cols=25  Identities=20%  Similarity=0.202  Sum_probs=21.6

Q ss_pred             cccccccccCCCCeeecCCCCCccCC
Q psy10674        109 CCYECDKELCNQSYIPVTESRPGQDS  134 (138)
Q Consensus       109 ~C~~C~~~l~~~~f~~~~~~~~y~~~  134 (138)
                      .|..|++.|.+....+++ ++|||.+
T Consensus         1 ~C~~C~K~LdS~~~~eh~-~e~YCk~   25 (65)
T d1b8ta2           1 LCMVCKKNLDSTTVAVHG-DEIYCKS   25 (65)
T ss_dssp             BCTTTCCBCCSSSEEEET-TEEEEHH
T ss_pred             CchhcCCccCCCccccCC-Ccccchh
Confidence            388999999999999998 8999953

>d1a7ia1 g.39.1.3 (A:8-35) Cysteine-rich (intestinal) protein, CRP, CRIP {Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]

Probab=94.10  E-value=0.011  Score=25.54  Aligned_cols=27  Identities=22%  Similarity=0.386  Sum_probs=21.2

Q ss_pred             ccccccccccCCCeEEEeccccCCCCCCcccCc
Q psy10674         15 CCYECDKKVQFENYTGKITQSQESEVLWHPQCF   47 (138)
Q Consensus        15 ~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf   47 (138)
                      +|..|.+.+.-.+-+...      ++.||..||
T Consensus         2 kcg~c~ktvy~aeevqc~------grsfhk~cf   28 (28)
T d1a7ia1           2 KCGACGRTVYHAEEVQCD------GRSFHRCCF   28 (28)
T ss_dssp             BCSSSCCBCSSTTEEEET------TEEEESSSE
T ss_pred             ccccccceEeeeeeeeec------CceeccccC
Confidence            588899998877777664      448999887

>d1x64a2 g.39.1.3 (A:53-83) PDZ and LIM domain protein 3, PDLIM3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: PDZ and LIM domain protein 3, PDLIM3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.08  E-value=0.0096  Score=26.57  Aligned_cols=25  Identities=20%  Similarity=0.440  Sum_probs=21.1

Q ss_pred             cccccccccCCCCeeecCCCCCccCC
Q psy10674        109 CCYECDKELCNQSYIPVTESRPGQDS  134 (138)
Q Consensus       109 ~C~~C~~~l~~~~f~~~~~~~~y~~~  134 (138)
                      .|+.|+..|....++..+ +++||.+
T Consensus         1 vC~dCg~NLKqrG~Ffv~-~~lyCE~   25 (31)
T d1x64a2           1 VCADCNLNLKQKGYFFVE-GELYCET   25 (31)
T ss_dssp             CCSSSCCCTTTSCCEEET-TEEECHH
T ss_pred             CccccccChhhcceEEec-cEEeehh
Confidence            488999999988888888 8999954

>d1b8ta1 g.39.1.3 (A:1-35) Cysteine-rich (intestinal) protein, CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=93.91  E-value=0.011  Score=26.92  Aligned_cols=28  Identities=29%  Similarity=0.464  Sum_probs=22.3

Q ss_pred             cccccccccccCCCeEEEeccccCCCCCCcccCc
Q psy10674         14 FCCYECDKKVQFENYTGKITQSQESEVLWHPQCF   47 (138)
Q Consensus        14 ~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf   47 (138)
                      -+|..|.+.+.-.+-+...      ++.||..||
T Consensus         8 ~kcg~c~ktvy~aeevqc~------g~sfhk~cf   35 (35)
T d1b8ta1           8 KKCGVCQKAVYFAEEVQCE------GSSFHKSCF   35 (35)
T ss_dssp             EECTTTCCEECSSCCEEET------TEEECTTTC
T ss_pred             ceeccccceEeeeeeeeec------CcccccccC
Confidence            5789999999877776654      558999997

>d1x4la2 g.39.1.3 (A:37-66) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 2, FHL2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.81  E-value=0.033  Score=24.18  Aligned_cols=28  Identities=18%  Similarity=0.381  Sum_probs=23.1

Q ss_pred             ccccCCccccCCceeeeCCeeecHHHHH
Q psy10674         48 VCSTCDELLVDLMYFHYKGNVYCLRDYA   75 (138)
Q Consensus        48 ~C~~C~~~l~~~~~~~~~~~~yC~~c~~   75 (138)
                      .|..|+..|.+..|....+.++|.+|-.
T Consensus         1 nc~kcsvslvgrgflterddilc~dcgk   28 (30)
T d1x4la2           1 NCKKCSLSLVGRGFLTERDDILCPDCGK   28 (30)
T ss_dssp             BCSSSCCBCTTSCCEECSSSEECHHHHH
T ss_pred             CcceeeEEEEeeeccccccceeccccCc
Confidence            3678889998988988888899988853

>d1x68a2 g.39.1.3 (A:37-70) Four and a half LIM domains protein 5, FHL-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 5, FHL-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.67  E-value=0.024  Score=25.44  Aligned_cols=26  Identities=19%  Similarity=0.552  Sum_probs=21.5

Q ss_pred             ccccCCccccCCceeeeCCeeecHHH
Q psy10674         48 VCSTCDELLVDLMYFHYKGNVYCLRD   73 (138)
Q Consensus        48 ~C~~C~~~l~~~~~~~~~~~~yC~~c   73 (138)
                      .|..|+..|.++.|......++|+.|
T Consensus         1 ncgkcsvslvg~gfltq~~~i~c~~c   26 (34)
T d1x68a2           1 NCGKCSVSLVGKGFLTQNKEIFCQKC   26 (34)
T ss_dssp             BCTTTCCBCSSSCEEEETTEEEETTT
T ss_pred             CCccceEEEEeeeeeeccCcEEehhc
Confidence            36778889988889988888888776

>d1a7ia2 g.39.1.3 (A:36-67) Cysteine-rich (intestinal) protein, CRP, CRIP {Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]

Probab=93.38  E-value=0.0081  Score=26.96  Aligned_cols=24  Identities=21%  Similarity=0.243  Sum_probs=21.7

Q ss_pred             ccccccccCCCCeeecCCCCCccCC
Q psy10674        110 CYECDKELCNQSYIPVTESRPGQDS  134 (138)
Q Consensus       110 C~~C~~~l~~~~f~~~~~~~~y~~~  134 (138)
                      |..|.+.|.+..-..++ +.+||.|
T Consensus         2 C~~C~K~LdStTva~h~-~eiYCKs   25 (32)
T d1a7ia2           2 CMVCRKNLDSTTVAIHD-AEVYCKS   25 (32)
T ss_dssp             CSSSCCEECSSCCEEET-TEEECSH
T ss_pred             chhhhhccCcceeeeec-ceEEehh
Confidence            77899999999999999 9999986

>d1rutx4 g.39.1.3 (X:114-146) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: LIM only 4 (Lmo4)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.93  E-value=0.015  Score=26.06  Aligned_cols=25  Identities=12%  Similarity=0.304  Sum_probs=19.5

Q ss_pred             cccccccccC-CCCeeecCCCCCccCC
Q psy10674        109 CCYECDKELC-NQSYIPVTESRPGQDS  134 (138)
Q Consensus       109 ~C~~C~~~l~-~~~f~~~~~~~~y~~~  134 (138)
                      +|+.|...|. |++|-..+ |+.||.-
T Consensus         1 tC~tC~n~LVPGDRFHyvN-G~lfCE~   26 (33)
T d1rutx4           1 TCSTCRNRLVPGDRFHYIN-GSLFCEH   26 (33)
T ss_dssp             BCTTTCCBCCTTCEEEEET-TEEEEGG
T ss_pred             CcccccccccCCceeEEec-CEEEEec
Confidence            4788877776 88888888 8888853

>d1x63a2 g.39.1.3 (A:45-76) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 1, FHL-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.44  E-value=0.025  Score=24.91  Aligned_cols=25  Identities=16%  Similarity=0.312  Sum_probs=19.7

Q ss_pred             cccccccccCCCCeeecCCCCCccCC
Q psy10674        109 CCYECDKELCNQSYIPVTESRPGQDS  134 (138)
Q Consensus       109 ~C~~C~~~l~~~~f~~~~~~~~y~~~  134 (138)
                      +|+.|+..++..+|+.+. ...||.+
T Consensus         1 tcs~ckq~igsgsffpkg-~d~ycvt   25 (32)
T d1x63a2           1 TCSNCKQVIGTGSFFPKG-EDFYCVT   25 (32)
T ss_dssp             CCSSSCCCCTTSCEEEET-TEEEEHH
T ss_pred             CcchhhhhcccccccCCC-CcEEEEE
Confidence            478888899888888887 6777753

>d1x68a2 g.39.1.3 (A:37-70) Four and a half LIM domains protein 5, FHL-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 5, FHL-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.16  E-value=0.045  Score=24.49  Aligned_cols=28  Identities=18%  Similarity=0.331  Sum_probs=22.6

Q ss_pred             cccccccccCCCCeeecCCCCCccCCCCC
Q psy10674        109 CCYECDKELCNQSYIPVTESRPGQDSPGS  137 (138)
Q Consensus       109 ~C~~C~~~l~~~~f~~~~~~~~y~~~~~~  137 (138)
                      .|.+|...|.|..|..++ ..+.|-..+|
T Consensus         1 ncgkcsvslvg~gfltq~-~~i~c~~cgs   28 (34)
T d1x68a2           1 NCGKCSVSLVGKGFLTQN-KEIFCQKCGS   28 (34)
T ss_dssp             BCTTTCCBCSSSCEEEET-TEEEETTTTC
T ss_pred             CCccceEEEEeeeeeecc-CcEEehhcCC
Confidence            377888899999998888 7788877665

>d1j2oa2 g.39.1.3 (A:31-63) Rhombotin-2 (Lmo2) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Rhombotin-2 (Lmo2)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.24  E-value=0.098  Score=23.31  Aligned_cols=29  Identities=31%  Similarity=0.560  Sum_probs=22.1

Q ss_pred             ccccCCccc--cCCceeeeCCeeecHHHHHh
Q psy10674         48 VCSTCDELL--VDLMYFHYKGNVYCLRDYAT   76 (138)
Q Consensus        48 ~C~~C~~~l--~~~~~~~~~~~~yC~~c~~~   76 (138)
                      +|.-|+-.|  .++..+.+.+.++|+.+|.+
T Consensus         2 kC~cC~cRLGEVG~tlytk~nliLCkrDYlR   32 (33)
T d1j2oa2           2 SCDLCGCRLGEVGRRLYYKLGRKLCRRDYLR   32 (33)
T ss_dssp             CCSSSCSCCCCSSSCCCCBTTBCCCHHHHHH
T ss_pred             ccccccccccchhhHHHhhcceeeehhhhhc
Confidence            566677777  34567789999999999865

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.17  E-value=0.055  Score=31.03  Aligned_cols=47  Identities=15%  Similarity=0.485  Sum_probs=32.4

Q ss_pred             cccccCCccccCCceeeeCCeeecHHHHHhhcCCCcccccCcccccCc
Q psy10674         47 FVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELIFVNE   94 (138)
Q Consensus        47 f~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~~C~~C~~~I~~~~   94 (138)
                      +.|..|...+........=|..||..|..+.++ ..|+.|+.++...+
T Consensus        23 l~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~-~~CP~Cr~~~~~~~   69 (97)
T d1jm7b_          23 LRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG-TGCPVCYTPAWIQD   69 (97)
T ss_dssp             TSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT-TBCSSSCCBCSCSS
T ss_pred             CCCccCCchhhcCceeCCCCCchhHHHHHHHHh-ccccccCCcCchhh
Confidence            678888877754322234577888888877774 57999988775543

>d2d8xa1 g.39.1.3 (A:33-64) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Pinch (particularly interesting new Cys-His) protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.62  E-value=0.071  Score=23.74  Aligned_cols=24  Identities=17%  Similarity=0.328  Sum_probs=20.3

Q ss_pred             cccccccccCCCCeeecCCCCCccC
Q psy10674        109 CCYECDKELCNQSYIPVTESRPGQD  133 (138)
Q Consensus       109 ~C~~C~~~l~~~~f~~~~~~~~y~~  133 (138)
                      +|..|..+|.+..|+... |++-|-
T Consensus         1 rC~~C~~~LAD~GFvKna-gR~LCr   24 (32)
T d2d8xa1           1 RCDLCQEVLADIGFVKNA-GRHLCR   24 (32)
T ss_dssp             BCSSSCCBCSSSCCEEET-TEEECH
T ss_pred             CchHHHhHHHHhhhhhcc-cccccc
Confidence            588999999999999888 887764

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.43  E-value=0.23  Score=25.29  Aligned_cols=49  Identities=6%  Similarity=0.066  Sum_probs=34.6

Q ss_pred             ccccCCccccCCceee-eCCeeecHHHHHhhcC-CCcccccCcccccCcEEE
Q psy10674         48 VCSTCDELLVDLMYFH-YKGNVYCLRDYATMLD-IPRCHACDELIFVNEYTL   97 (138)
Q Consensus        48 ~C~~C~~~l~~~~~~~-~~~~~yC~~c~~~~~~-~~~C~~C~~~I~~~~~~~   97 (138)
                      .|..|...+.+ .... ..|..||+.|-.+.+. ...|..|++++...+++.
T Consensus         2 ~C~Ic~~~~~~-Pv~~~~cGh~fc~~cI~~~l~~~~~CP~c~~~l~~~dLip   52 (56)
T d2baya1           2 LCAISGKVPRR-PVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVE   52 (56)
T ss_dssp             CCTTTCSCCSS-EEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCEE
T ss_pred             CCccCCchHHh-cCccCCCCCcccHHHHHHHHhhccCCCccCCcCCHHhcee
Confidence            57888887754 3444 5799999988644320 158999999998777664

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.89  E-value=0.22  Score=27.21  Aligned_cols=52  Identities=13%  Similarity=0.055  Sum_probs=38.2

Q ss_pred             ccCcccccCCccccCCceeeeCCeeecHHHHHhhc--CCCcccccCcccccCcEE
Q psy10674         44 PQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATML--DIPRCHACDELIFVNEYT   96 (138)
Q Consensus        44 ~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~--~~~~C~~C~~~I~~~~~~   96 (138)
                      ++-|.|..|...+.+ .....-|..||..|..+.+  +...|..|+.+|...+++
T Consensus         5 P~~l~CpIc~~l~~d-Pv~~~cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~~~l~   58 (80)
T d2c2la2           5 PDYLCGKISFELMRE-PCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLI   58 (80)
T ss_dssp             CSTTBCTTTCSBCSS-EEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCE
T ss_pred             CccccCcCcCchhhh-hcccCCcCeecHHHHHHHHhcCCccCCCccccccccccc
Confidence            567899999988865 3556778999988865532  235799999998765544

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=87.58  E-value=0.66  Score=24.96  Aligned_cols=52  Identities=23%  Similarity=0.356  Sum_probs=38.8

Q ss_pred             ccCcccccCCccccCCceeeeCCeeecHHHHHhhc--CCCcccccCcccccCcEE
Q psy10674         44 PQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATML--DIPRCHACDELIFVNEYT   96 (138)
Q Consensus        44 ~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~--~~~~C~~C~~~I~~~~~~   96 (138)
                      ++-|.|..|...+.+ ......|..||+.|..+.+  +...|..|+.++...+++
T Consensus         6 P~~l~CpIc~~~m~d-PV~~~cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~~~l~   59 (78)
T d1t1ha_           6 PEYFRCPISLELMKD-PVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLT   59 (78)
T ss_dssp             SSSSSCTTTSCCCSS-EEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCE
T ss_pred             CccCCCcCcCchhhC-ceEccCCCcchHHHHHHHHHHCCCCCCcccccCCccccc
Confidence            345899999988865 3556789999999986643  224799999998766554

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=87.27  E-value=0.13  Score=27.29  Aligned_cols=9  Identities=22%  Similarity=0.737  Sum_probs=4.4

Q ss_pred             cccccCccc
Q psy10674         82 RCHACDELI   90 (138)
Q Consensus        82 ~C~~C~~~I   90 (138)
                      .|+.|..+|
T Consensus        42 ~CP~CR~~i   50 (68)
T d1chca_          42 TCPLCKVPV   50 (68)
T ss_dssp             STTTTCCCC
T ss_pred             cCCCCCcch
Confidence            455554444

>d1v6ga2 g.39.1.3 (A:42-81) Actin-binding LIM protein 2, abLIM2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Actin-binding LIM protein 2, abLIM2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.93  E-value=0.52  Score=21.94  Aligned_cols=10  Identities=40%  Similarity=1.035  Sum_probs=5.3

Q ss_pred             cccccCCccc
Q psy10674         47 FVCSTCDELL   56 (138)
Q Consensus        47 f~C~~C~~~l   56 (138)
                      |.|..|.+++
T Consensus         1 FvC~vCr~pF   10 (40)
T d1v6ga2           1 FVCAVCRLPF   10 (40)
T ss_dssp             SSCSSSCCCC
T ss_pred             CcccccCCCC
Confidence            4455555555

>d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Cellulose synthase A catalytic subunit 7, IRX3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=85.96  E-value=0.4  Score=26.70  Aligned_cols=26  Identities=19%  Similarity=0.307  Sum_probs=18.8

Q ss_pred             CCeeecHHHHH--hhcCCCcccccCccc
Q psy10674         65 KGNVYCLRDYA--TMLDIPRCHACDELI   90 (138)
Q Consensus        65 ~~~~yC~~c~~--~~~~~~~C~~C~~~I   90 (138)
                      =+.+.|+.||.  ..-|...|.+|+.+-
T Consensus        41 C~FPvCrpCyEYErkeG~q~CpqCkt~Y   68 (93)
T d1weoa_          41 CGFPACRPCYEYERREGTQNCPQCKTRY   68 (93)
T ss_dssp             SCCCCCHHHHHHHHHTSCSSCTTTCCCC
T ss_pred             cCCccchHHHHHHHhccCccCcccCChh
Confidence            34667898884  445667899998765

>d2co8a1 g.39.1.3 (A:44-76) Nedd9 interacting protein with calponin homology, NICAL (MICAL1) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Nedd9 interacting protein with calponin homology, NICAL (MICAL1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.20  E-value=0.1  Score=23.41  Aligned_cols=27  Identities=33%  Similarity=0.645  Sum_probs=19.7

Q ss_pred             ccccCCccccCCceee--eCCeeecHHHH
Q psy10674         48 VCSTCDELLVDLMYFH--YKGNVYCLRDY   74 (138)
Q Consensus        48 ~C~~C~~~l~~~~~~~--~~~~~yC~~c~   74 (138)
                      +|..|...|....|..  .+|..||..+.
T Consensus         1 rC~~CeatL~pG~Y~qhp~dghfyc~~hl   29 (33)
T d2co8a1           1 RCHTCEATLWPGGYEQHPGDGHFYCLQHL   29 (33)
T ss_dssp             BCSSSCCBCCTTSEECCTTTCCCEETTTC
T ss_pred             CceeeeeEEccCcccCCCCCceEeeeecc
Confidence            4778888886666643  78888987654

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.12  E-value=0.64  Score=25.86  Aligned_cols=51  Identities=18%  Similarity=0.355  Sum_probs=37.1

Q ss_pred             cCcccccCCccccCCceeeeCCeeecHHHHHhhc--CCCcccccCcccccCcEE
Q psy10674         45 QCFVCSTCDELLVDLMYFHYKGNVYCLRDYATML--DIPRCHACDELIFVNEYT   96 (138)
Q Consensus        45 ~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~--~~~~C~~C~~~I~~~~~~   96 (138)
                      +-+.|..|...+.. .....=|-.||..|..+.+  +...|+.|..++...++.
T Consensus        22 ~~l~C~IC~~~~~~-pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~~~l~   74 (86)
T d1rmda2          22 KSISCQICEHILAD-PVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLE   74 (86)
T ss_dssp             HHTBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCB
T ss_pred             cCcCCccCCcchhc-ceecCCCChhhHHHHHHHHhhCCCcCcccCCCCChhhcc
Confidence            34789999887754 4455778899999986543  235899999998765543

>d1uw0a_ g.39.1.12 (A:) DNA ligase III {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: PARP-type zinc finger
domain: DNA ligase III
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.42  E-value=0.15  Score=30.31  Aligned_cols=30  Identities=23%  Similarity=0.516  Sum_probs=20.0

Q ss_pred             CCcccccCcccccCcEEEe--------C-----CCccccCCcc
Q psy10674         80 IPRCHACDELIFVNEYTLA--------E-----NKTFHVKHFC  109 (138)
Q Consensus        80 ~~~C~~C~~~I~~~~~~~~--------~-----~~~~H~~CF~  109 (138)
                      ...|.+|++.|.-+++-.+        .     ...||++||.
T Consensus        15 Ra~Ck~C~~~I~Kg~lRig~~~~~~~~~~~g~~~~W~H~~Cf~   57 (117)
T d1uw0a_          15 TAGCKKCKEKIVKGVCRIGKVVPNPFSESGGDMKEWYHIKCMF   57 (117)
T ss_dssp             CEECTTSSCEECTTCEEEEEEEECTTCSSCCEECCBCCHHHHH
T ss_pred             CcccCCCCccccCCCeEEEEEEeCcccccCCCcCccCCccccc
Confidence            3589999999977653221        0     2457999985

>d2gvia2 g.39.1.18 (A:169-201) Uncharacterized protein Ta1109 {Thermoplasma acidophilum [TaxId: 2303]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: FwdE C-terminal domain-like
domain: Uncharacterized protein Ta1109
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=80.83  E-value=0.75  Score=19.93  Aligned_cols=28  Identities=25%  Similarity=0.453  Sum_probs=17.9

Q ss_pred             ccccCCccccCCceeeeCCeeecHHHHH
Q psy10674         48 VCSTCDELLVDLMYFHYKGNVYCLRDYA   75 (138)
Q Consensus        48 ~C~~C~~~l~~~~~~~~~~~~yC~~c~~   75 (138)
                      +|..|+.---......-+|++.|+.+|.
T Consensus         5 rcdvcgeytyeadakllngkpvckpdyy   32 (33)
T d2gvia2           5 RCDVCGEYTYEADAKLLNGKPVCKPDYY   32 (33)
T ss_dssp             ECTTTCCEEEGGGCEEETTEEECHHHHH
T ss_pred             EEeeccceeeccchhhhCCCcccCcccC
Confidence            5677765432223345788999998874